Fitness of crop-wild hybrid sunflower under competitive conditions: implications for crop-to-wild introgression.

Science.gov (United States)

Mercer, Kristin L; Emry, D Jason; Snow, Allison A; Kost, Matthew A; Pace, Brian A; Alexander, Helen M

2014-01-01

Understanding the likelihood and extent of introgression of novel alleles in hybrid zones requires comparison of lifetime fitness of parents and hybrid progeny. However, fitness differences among cross types can vary depending on biotic conditions, thereby influencing introgression patterns. Based on past work, we predicted that increased competition would enhance introgression between cultivated and wild sunflower (Helianthus annuus) by reducing fitness advantages of wild plants. To test this prediction, we established a factorial field experiment in Kansas, USA where we monitored the fitness of four cross types (Wild, F1, F2, and BCw hybrids) under different levels of interspecific and intraspecific competition. Intraspecific manipulations consisted both of density of competitors and of frequency of crop-wild hybrids. We recorded emergence of overwintered seeds, survival to reproduction, and numbers of seeds produced per reproductive plant. We also calculated two compound fitness measures: seeds produced per emerged seedling and seeds produced per planted seed. Cross type and intraspecific competition affected emergence and survival to reproduction, respectively. Further, cross type interacted with competitive treatments to influence all other fitness traits. More intense competition treatments, especially related to density of intraspecific competitors, repeatedly reduced the fitness advantage of wild plants when considering seeds produced per reproductive plant and per emerged seedling, and F2 plants often became indistinguishable from the wilds. Wild fitness remained superior when seedling emergence was also considered as part of fitness, but the fitness of F2 hybrids relative to wild plants more than quadrupled with the addition of interspecific competitors and high densities of intraspecific competitors. Meanwhile, contrary to prediction, lower hybrid frequency reduced wild fitness advantage. These results emphasize the importance of taking a full life cycle

Fitness of crop-wild hybrid sunflower under competitive conditions: implications for crop-to-wild introgression.

Directory of Open Access Journals (Sweden)

Kristin L Mercer

Full Text Available Understanding the likelihood and extent of introgression of novel alleles in hybrid zones requires comparison of lifetime fitness of parents and hybrid progeny. However, fitness differences among cross types can vary depending on biotic conditions, thereby influencing introgression patterns. Based on past work, we predicted that increased competition would enhance introgression between cultivated and wild sunflower (Helianthus annuus by reducing fitness advantages of wild plants. To test this prediction, we established a factorial field experiment in Kansas, USA where we monitored the fitness of four cross types (Wild, F1, F2, and BCw hybrids under different levels of interspecific and intraspecific competition. Intraspecific manipulations consisted both of density of competitors and of frequency of crop-wild hybrids. We recorded emergence of overwintered seeds, survival to reproduction, and numbers of seeds produced per reproductive plant. We also calculated two compound fitness measures: seeds produced per emerged seedling and seeds produced per planted seed. Cross type and intraspecific competition affected emergence and survival to reproduction, respectively. Further, cross type interacted with competitive treatments to influence all other fitness traits. More intense competition treatments, especially related to density of intraspecific competitors, repeatedly reduced the fitness advantage of wild plants when considering seeds produced per reproductive plant and per emerged seedling, and F2 plants often became indistinguishable from the wilds. Wild fitness remained superior when seedling emergence was also considered as part of fitness, but the fitness of F2 hybrids relative to wild plants more than quadrupled with the addition of interspecific competitors and high densities of intraspecific competitors. Meanwhile, contrary to prediction, lower hybrid frequency reduced wild fitness advantage. These results emphasize the importance of taking

Fitness of Crop-Wild Hybrid Sunflower under Competitive Conditions: Implications for Crop-to-Wild Introgression

Science.gov (United States)

Mercer, Kristin L.; Emry, D. Jason; Snow, Allison A.; Kost, Matthew A.; Pace, Brian A.; Alexander, Helen M.

2014-01-01

Understanding the likelihood and extent of introgression of novel alleles in hybrid zones requires comparison of lifetime fitness of parents and hybrid progeny. However, fitness differences among cross types can vary depending on biotic conditions, thereby influencing introgression patterns. Based on past work, we predicted that increased competition would enhance introgression between cultivated and wild sunflower (Helianthus annuus) by reducing fitness advantages of wild plants. To test this prediction, we established a factorial field experiment in Kansas, USA where we monitored the fitness of four cross types (Wild, F1, F2, and BCw hybrids) under different levels of interspecific and intraspecific competition. Intraspecific manipulations consisted both of density of competitors and of frequency of crop-wild hybrids. We recorded emergence of overwintered seeds, survival to reproduction, and numbers of seeds produced per reproductive plant. We also calculated two compound fitness measures: seeds produced per emerged seedling and seeds produced per planted seed. Cross type and intraspecific competition affected emergence and survival to reproduction, respectively. Further, cross type interacted with competitive treatments to influence all other fitness traits. More intense competition treatments, especially related to density of intraspecific competitors, repeatedly reduced the fitness advantage of wild plants when considering seeds produced per reproductive plant and per emerged seedling, and F2 plants often became indistinguishable from the wilds. Wild fitness remained superior when seedling emergence was also considered as part of fitness, but the fitness of F2 hybrids relative to wild plants more than quadrupled with the addition of interspecific competitors and high densities of intraspecific competitors. Meanwhile, contrary to prediction, lower hybrid frequency reduced wild fitness advantage. These results emphasize the importance of taking a full life cycle

Genomic and environmental selection patterns in two distinct lettuce crop-wild hybrid crosses

NARCIS (Netherlands)

Hartman, Y.; Uwimana, B; Hooftman, D.A.P.; Schranz, M.E.; van de Wiel, C.C.M.; Smulders, M.J.M.; Visser, R.G.F.; van Tienderen, P.H.

2013-01-01

Genomic selection patterns and hybrid performance influence the chance that crop (trans)genes can spread to wild relatives. We measured fitness(-related) traits in two different field environments employing two different crop-wild crosses of lettuce. We performed quantitative trait loci (QTL)

The GRIN-Taxonomy crop wild relative inventory

Science.gov (United States)

In order to provide an informational tool for assessing and prioritizing germplasm needs for ex situ conservation in the U.S. National Plant Germplasm System (NPGS), the USDA Agricultural Research Service in 2008 initiated a project to identify wild relatives (CWR) of major and minor crops. Each cro...

Profiling crop pollinators: life history traits predict habitat use and crop visitation by Mediterranean wild bees.

Science.gov (United States)

Pisanty, Gideon; Mandelik, Yael

2015-04-01

Wild pollinators, bees in particular, may greatly contribute to crop pollination and provide a safety net against declines in commercial pollinators. However, the identity, life history traits, and environmental sensitivities of main crop pollinator species.have received limited attention. These are crucial for predicting pollination services of different communities and for developing management practices that enhance crop pollinators. We sampled wild bees in three crop systems (almond, confection sunflower, and seed watermelon) in a mosaic Israeli Mediterranean landscape. Bees were sampled in field/orchard edges and interiors, and in seminatural scrub surrounding the fields/orchards. We also analyzed land cover at 50-2500 m radii around fields/orchards. We used this data to distinguish crop from non-crop pollinators based on a set of life history traits (nesting, lecty, sociality, body size) linked to habitat preference and crop visitation. Bee abundance and species richness decreased from the surrounding seminatural habitat to the field/orchard interior, especially across the seminatural habitat-field edge ecotone. Thus, although rich bee communities were found near fields, only small fractions crossed the ecotone and visited crop flowers in substantial numbers. The bee assemblage in agricultural fields/orchards and on crop flowers was dominated by ground-nesting bees of the tribe Halictini, which tend to nest within fields. Bees' habitat preferences were determined mainly by nesting guild, whereas crop visitation was determined mainly by sociality. Lecty and body size also affected both measures. The percentage of surrounding seminatural habitat at 250-2500 m radii had a positive effect on wild bee diversity in field edges, for all bee guilds, while at 50-100 m radii, only aboveground nesters were positively affected. In sum, we found that crop and non-crop pollinators are distinguished by behavioral and morphological traits. Hence, analysis of life

Experimental evidence that honeybees depress wild insect densities in a flowering crop.

Science.gov (United States)

Lindström, Sandra A M; Herbertsson, Lina; Rundlöf, Maj; Bommarco, Riccardo; Smith, Henrik G

2016-11-30

While addition of managed honeybees (Apis mellifera) improves pollination of many entomophilous crops, it is unknown if it simultaneously suppresses the densities of wild insects through competition. To investigate this, we added 624 honeybee hives to 23 fields of oilseed rape (Brassica napus L.) over 2 years and made sure that the areas around 21 other fields were free from honeybee hives. We demonstrate that honeybee addition depresses the densities of wild insects (bumblebees, solitary bees, hoverflies, marchflies, other flies, and other flying and flower-visiting insects) even in a massive flower resource such as oilseed rape. The effect was independent of the complexity of the surrounding landscape, but increased with the size of the crop field, which suggests that the effect was caused by spatial displacement of wild insects. Our results have potential implications both for the pollination of crops (if displacement of wild pollinators offsets benefits achieved by adding honeybees) and for conservation of wild insects (if displacement results in negative fitness consequences). © 2016 The Author(s).

Crop-to-wild gene flow and its fitness consequences for a wild fruit tree: Towards a comprehensive conservation strategy of the wild apple in Europe.

Science.gov (United States)

Feurtey, Alice; Cornille, Amandine; Shykoff, Jacqui A; Snirc, Alodie; Giraud, Tatiana

2017-02-01

Crop-to-wild gene flow can reduce the fitness and genetic integrity of wild species. Malus sylvestris , the European crab-apple fruit tree in particular, is threatened by the disappearance of its habitat and by gene flow from its domesticated relative , Malus domestica . With the aims of evaluating threats for M. sylvestris and of formulating recommendations for its conservation, we studied here, using microsatellite markers and growth experiments: (i) hybridization rates in seeds and trees from a French forest and in seeds used for replanting crab apples in agrosystems and in forests, (ii) the impact of the level of M. domestica ancestry on individual tree fitness and (iii) pollen dispersal abilities in relation to crop-to-wild gene flow. We found substantial contemporary crop-to-wild gene flow in crab-apple tree populations and superior fitness of hybrids compared to wild seeds and seedlings. Using paternity analyses, we showed that pollen dispersal could occur up to 4 km and decreased with tree density. The seed network furnishing the wild apple reintroduction agroforestry programmes was found to suffer from poor genetic diversity, introgressions and species misidentification. Overall, our findings indicate supported threats for the European wild apple steering us to provide precise recommendations for its conservation.

An Inventory of Crop Wild Relatives of the United States

NARCIS (Netherlands)

Khoury, C.K.; Greene, S.; Wiersema, J.; Maxted, N.; Jarvis, A.; Struik, P.C.

2013-01-01

The use of crop wild relatives (CWRs) in breeding is likely to continue to intensify as utilization techniques improve and crop adaptation to climate change becomes more pressing. Signifi cant gaps remain in the conservation of these genetic resources. As a fi rst step toward a national strategy for

Hybridization between crops and wild relatives: the contribution of cultivated lettuce to the vigour of crop–wild hybrids under drought, salinity and nutrient deficiency conditions

OpenAIRE

Uwimana, Brigitte; Smulders, Marinus J.M.; Hooftman, Danny A.P.; Hartman, Yorike; van Tienderen, Peter H.; Jansen, Johannes; McHale, Leah K.; Michelmore, Richard W.; van de Wiel , Clemens C.M.; Visser , Richard G.F.

2012-01-01

With the development of transgenic crop varieties, crop–wild hybridization has received considerable consideration with regard to the potential of transgenes to be transferred to wild species. Although many studies have shown that crops can hybridize with their wild relatives and that the resulting hybrids may show improved fitness over the wild parents, little is still known on the genetic contribution of the crop parent to the performance of the hybrids. In this study, we investigated the v...

Potential Uses of Wild Germplasms of Grain Legumes for Crop Improvement

Science.gov (United States)

Muñoz, Nacira; Liu, Ailin; Kan, Leo; Li, Man-Wah; Lam, Hon-Ming

2017-01-01

Challenged by population increase, climatic change, and soil deterioration, crop improvement is always a priority in securing food supplies. Although the production of grain legumes is in general lower than that of cereals, the nutritional value of grain legumes make them important components of food security. Nevertheless, limited by severe genetic bottlenecks during domestication and human selection, grain legumes, like other crops, have suffered from a loss of genetic diversity which is essential for providing genetic materials for crop improvement programs. Illustrated by whole-genome-sequencing, wild relatives of crops adapted to various environments were shown to maintain high genetic diversity. In this review, we focused on nine important grain legumes (soybean, peanut, pea, chickpea, common bean, lentil, cowpea, lupin, and pigeonpea) to discuss the potential uses of their wild relatives as genetic resources for crop breeding and improvement, and summarized the various genetic/genomic approaches adopted for these purposes. PMID:28165413

Potential Uses of Wild Germplasms of Grain Legumes for Crop Improvement

Directory of Open Access Journals (Sweden)

Nacira Muñoz

2017-02-01

Full Text Available Challenged by population increase, climatic change, and soil deterioration, crop improvement is always a priority in securing food supplies. Although the production of grain legumes is in general lower than that of cereals, the nutritional value of grain legumes make them important components of food security. Nevertheless, limited by severe genetic bottlenecks during domestication and human selection, grain legumes, like other crops, have suffered from a loss of genetic diversity which is essential for providing genetic materials for crop improvement programs. Illustrated by whole-genome-sequencing, wild relatives of crops adapted to various environments were shown to maintain high genetic diversity. In this review, we focused on nine important grain legumes (soybean, peanut, pea, chickpea, common bean, lentil, cowpea, lupin, and pigeonpea to discuss the potential uses of their wild relatives as genetic resources for crop breeding and improvement, and summarized the various genetic/genomic approaches adopted for these purposes.

Utilization of sunflower crop wild relatives for cultivated sunflower improvement

Science.gov (United States)

Sunflower (Helianthus annuus L.) is one of the few crops native to the U.S. The current USDA-ARS-NPGS crop wild relatives sunflower collection is the largest extant collection in the world, containing 2,519 accessions comprised of 53 species; 39 perennial and 14 annual. To fully utilize gene bank co...

Crop to wild gene flow: Does more sophisticated research provide better risk assessment?

International Nuclear Information System (INIS)

Jong, Tom J. de; Rong, Jun

2013-01-01

Highlights: ► Genes can sometimes flow from genetically modified crops to wild plants. ► The probability can be predicted from seed production of hybrids and backcrosses. ► Nevertheless predictions about introgression remain uncertain. ► One should be reluctant to ask too much detail in Environmental Risk Assessment. ► Instead possible harm should have a more central place. -- Abstract: Research into introgression, the permanent incorporation of alleles of one species into another, is flourishing and gives new insights into evolution and speciation. The possible transfer of transgenes from crop species to wild relatives is of major concern for regulators. Applicants that want to introduce a genetically modified (GM) crop on the European market need to indicate the likelihood of introgression and its anticipated effects in an Environmental Risk Analysis (ERA). The European Food Safety Association (EFSA) and competent authorities of different countries evaluate the ERA. Predicting which crop alleles will or will not be permanently incorporated into wild populations requires, apart from information on seed production of hybrids, information on how these crop alleles are associated with fitness. Advances in genetics open new avenues to address this question in more detail. We argue, however, that, even with the best techniques, predicting introgression from crop to wild species will always have a considerable margin of uncertainty. One must therefore be prudent to demand more detailed research for the ERA, especially since the possible harm of transgenes in natural populations remains so poorly defined by regulators

Crop wild relatives of the brinjal eggplant (Solanum melongena)

NARCIS (Netherlands)

Syfert, Mindy M.; Castañeda-Álvarez, Nora P.; Khoury, Colin K.; Särkinen, Tiina; Sosa, Chrystian C.; Achicanoy, Harold A.; Bernau, Vivian; Prohens, Jaime; Daunay, Marie Christine; Knapp, Sandra

2016-01-01

PREMISE OF THE STUDY: Crop wild relatives (CWR) provide important traits for plant breeding, including pest, pathogen, and abiotic stress resistance. Therefore, their conservation and future availability are essential for food security. Despite this need, the world's genebanks are currently

Delivery of crop pollination services is an insufficient argument for wild pollinator conservation

Science.gov (United States)

Kleijn, David; Winfree, Rachael; Bartomeus, Ignasi; Carvalheiro, Luísa G; Henry, Mickaël; Isaacs, Rufus; Klein, Alexandra-Maria; Kremen, Claire; M'Gonigle, Leithen K; Rader, Romina; Ricketts, Taylor H; Williams, Neal M; Lee Adamson, Nancy; Ascher, John S; Báldi, András; Batáry, Péter; Benjamin, Faye; Biesmeijer, Jacobus C; Blitzer, Eleanor J; Bommarco, Riccardo; Brand, Mariëtte R; Bretagnolle, Vincent; Button, Lindsey; Cariveau, Daniel P; Chifflet, Rémy; Colville, Jonathan F; Danforth, Bryan N; Elle, Elizabeth; Garratt, Michael P.D.; Herzog, Felix; Holzschuh, Andrea; Howlett, Brad G; Jauker, Frank; Jha, Shalene; Knop, Eva; Krewenka, Kristin M; Le Féon, Violette; Mandelik, Yael; May, Emily A; Park, Mia G; Pisanty, Gideon; Reemer, Menno; Riedinger, Verena; Rollin, Orianne; Rundlöf, Maj; Sardiñas, Hillary S; Scheper, Jeroen; Sciligo, Amber R; Smith, Henrik G; Steffan-Dewenter, Ingolf; Thorp, Robbin; Tscharntke, Teja; Verhulst, Jort; Viana, Blandina F; Vaissière, Bernard E; Veldtman, Ruan; Westphal, Catrin; Potts, Simon G

2015-01-01

There is compelling evidence that more diverse ecosystems deliver greater benefits to people, and these ecosystem services have become a key argument for biodiversity conservation. However, it is unclear how much biodiversity is needed to deliver ecosystem services in a cost-effective way. Here we show that, while the contribution of wild bees to crop production is significant, service delivery is restricted to a limited subset of all known bee species. Across crops, years and biogeographical regions, crop-visiting wild bee communities are dominated by a small number of common species, and threatened species are rarely observed on crops. Dominant crop pollinators persist under agricultural expansion and many are easily enhanced by simple conservation measures, suggesting that cost-effective management strategies to promote crop pollination should target a different set of species than management strategies to promote threatened bees. Conserving the biological diversity of bees therefore requires more than just ecosystem-service-based arguments. PMID:26079893

Distributions, ex situ conservation priorities, and genetic resource potential of crop wild relatives of sweetpotato [Ipomoea batatas (L.) Lam., I. series Batatas].

Science.gov (United States)

Khoury, Colin K; Heider, Bettina; Castañeda-Álvarez, Nora P; Achicanoy, Harold A; Sosa, Chrystian C; Miller, Richard E; Scotland, Robert W; Wood, John R I; Rossel, Genoveva; Eserman, Lauren A; Jarret, Robert L; Yencho, G C; Bernau, Vivian; Juarez, Henry; Sotelo, Steven; de Haan, Stef; Struik, Paul C

2015-01-01

Crop wild relatives of sweetpotato [Ipomoea batatas (L.) Lam., I. series Batatas] have the potential to contribute to breeding objectives for this important root crop. Uncertainty in regard to species boundaries and their phylogenetic relationships, the limited availability of germplasm with which to perform crosses, and the difficulty of introgression of genes from wild species has constrained their utilization. Here, we compile geographic occurrence data on relevant sweetpotato wild relatives and produce potential distribution models for the species. We then assess the comprehensiveness of ex situ germplasm collections, contextualize these results with research and breeding priorities, and use ecogeographic information to identify species with the potential to contribute desirable agronomic traits. The fourteen species that are considered the closest wild relatives of sweetpotato generally occur from the central United States to Argentina, with richness concentrated in Mesoamerica and in the extreme Southeastern United States. Currently designated species differ among themselves and in comparison to the crop in their adaptations to temperature, precipitation, and edaphic characteristics and most species also show considerable intraspecific variation. With 79% of species identified as high priority for further collecting, we find that these crop genetic resources are highly under-represented in ex situ conservation systems and thus their availability to breeders and researchers is inadequate. We prioritize taxa and specific geographic locations for further collecting in order to improve the completeness of germplasm collections. In concert with enhanced conservation of sweetpotato wild relatives, further taxonomic research, characterization and evaluation of germplasm, and improving the techniques to overcome barriers to introgression with wild species are needed in order to mobilize these genetic resources for crop breeding.

Distributions, ex situ conservation priorities, and genetic resource potential of crop wild relatives of sweetpotato [Ipomoea batatas (L. Lam., I. series Batatas

Directory of Open Access Journals (Sweden)

Colin Kahlil Khoury

2015-04-01

Full Text Available Crop wild relatives of sweetpotato [Ipomoea batatas (L. Lam., I. series Batatas] have the potential to contribute to breeding objectives for this important root crop. Uncertainty in regard to species boundaries and their phylogenetic relationships, the limited availability of germplasm with which to perform crosses, and the difficulty of introgression of genes from wild species has constrained their utilization. Here we compile geographic occurrence data on relevant sweetpotato wild relatives and produce potential distribution models for the species. We then assess the comprehensiveness of ex situ germplasm collections, contextualize these results with research and breeding priorities, and use ecogeographic information to identify species with the potential to contribute desirable agronomic traits. The fourteen species that are considered the closest wild relatives of sweetpotato generally occur from the central United States to Argentina, with richness concentrated in Mesoamerica and in the extreme southeastern United States. Currently designated species differ among themselves and in comparison to the crop in their adaptations to temperature, precipitation, and edaphic characteristics and most species also show considerable intraspecific variation. With 79% of species identified as high priority for further collecting, we find that these crop genetic resources are highly under-represented in ex situ conservation systems and thus their availability to breeders and researchers is inadequate. We prioritize taxa and specific geographic locations for further collecting in order to improve the completeness of germplasm collections. In concert with enhanced conservation of sweetpotato wild relatives, further taxonomic research, characterization and evaluation of germplasm, and improving the techniques to overcome barriers to introgression with wild species are needed in order to mobilize these genetic resources for crop breeding.

Genomic and environmental selection patterns in two distinct lettuce crop-wild hybrid crosses

OpenAIRE

Hartman, Y.; Uwimana, B.; Hooftman, D.A.P.; Schranz, M.E.; Wiel, van de, C.C.M.; Smulders, M.J.M.; Visser, R.G.F.; Tienderen, van, P.H.

2013-01-01

Genomic selection patterns and hybrid performance influence the chance that crop (trans)genes can spread to wild relatives. We measured fitness(-related) traits in two different field environments employing two different crop?wild crosses of lettuce. We performed quantitative trait loci (QTL) analyses and estimated the fitness distribution of early- and late-generation hybrids. We detected consistent results across field sites and crosses for a fitness QTL at linkage group 7, where a selectiv...

Conservation priorities for tree crop wild relatives in the United States

Science.gov (United States)

Colin K. Khoury; Stephanie L. Greene; Karen A. Williams; Chrystian C. Sosa; Chris. Richards

2017-01-01

Crop wild relatives native to the United States have proved useful as genetic resources in breeding more productive, nutritious, and resilient crops. Their utilization is expected to increase with better information about the species and improving breeding tools. But this utilization may be constrained by their limited representation in genebanks and the ongoing loss...

Locus-dependent selection in crop-wild hybrids of lettuce under field conditions and its implication for GM crop development

Science.gov (United States)

Hooftman, Danny A P; Flavell, Andrew J; Jansen, Hans; den Nijs, Hans C M; Syed, Naeem H; Sørensen, Anker P; Orozco-ter Wengel, Pablo; van de Wiel, Clemens C M

2011-01-01

Gene escape from crops has gained much attention in the last two decades, as transgenes introgressing into wild populations could affect the latter's ecological characteristics. However, different genes have different likelihoods of introgression. The mixture of selective forces provided by natural conditions creates an adaptive mosaic of alleles from both parental species. We investigated segregation patterns after hybridization between lettuce (Lactuca sativa) and its wild relative, L. serriola. Three generations of hybrids (S1, BC1, and BC1S1) were grown in habitats mimicking the wild parent's habitat. As control, we harvested S1 seedlings grown under controlled conditions, providing very limited possibility for selection. We used 89 AFLP loci, as well as more recently developed dominant markers, 115 retrotransposon markers (SSAP), and 28 NBS loci linked to resistance genes. For many loci, allele frequencies were biased in plants exposed to natural field conditions, including over-representation of crop alleles for various loci. Furthermore, Linkage disequilibrium was locally changed, allegedly by selection caused by the natural field conditions, providing ample opportunity for genetic hitchhiking. Our study indicates that when developing genetically modified crops, a judicious selection of insertion sites, based on knowledge of selective (dis)advantages of the surrounding crop genome under field conditions, could diminish transgene persistence. PMID:25568012

Locus-dependent selection in crop-wild hybrids of lettuce under field conditions and its implication for GM crop development.

Science.gov (United States)

Hooftman, Danny A P; Flavell, Andrew J; Jansen, Hans; den Nijs, Hans C M; Syed, Naeem H; Sørensen, Anker P; Orozco-Ter Wengel, Pablo; van de Wiel, Clemens C M

2011-09-01

Gene escape from crops has gained much attention in the last two decades, as transgenes introgressing into wild populations could affect the latter's ecological characteristics. However, different genes have different likelihoods of introgression. The mixture of selective forces provided by natural conditions creates an adaptive mosaic of alleles from both parental species. We investigated segregation patterns after hybridization between lettuce (Lactuca sativa) and its wild relative, L. serriola. Three generations of hybrids (S1, BC1, and BC1S1) were grown in habitats mimicking the wild parent's habitat. As control, we harvested S1 seedlings grown under controlled conditions, providing very limited possibility for selection. We used 89 AFLP loci, as well as more recently developed dominant markers, 115 retrotransposon markers (SSAP), and 28 NBS loci linked to resistance genes. For many loci, allele frequencies were biased in plants exposed to natural field conditions, including over-representation of crop alleles for various loci. Furthermore, Linkage disequilibrium was locally changed, allegedly by selection caused by the natural field conditions, providing ample opportunity for genetic hitchhiking. Our study indicates that when developing genetically modified crops, a judicious selection of insertion sites, based on knowledge of selective (dis)advantages of the surrounding crop genome under field conditions, could diminish transgene persistence.

Genomic and environmental selection patterns in two distinct lettuce crop-wild hybrid crosses

NARCIS (Netherlands)

Hartman, Y.; Uwimana, B.; Hooftman, D.A.P.; Schranz, M.E.; Wiel, van de C.C.M.; Smulders, M.J.M.; Visser, R.G.F.; Tienderen, van P.H.

2013-01-01

Genomic selection patterns and hybrid performance influence the chance that crop (trans)genes can spread to wild relatives. We measured fitness(-related) traits in two different field environments employing two different crop–wild crosses of lettuce. We performed quantitative trait loci (QTL)

The Effect of Altered Soil Moisture on Hybridization Rate in a Crop-Wild System (Raphanus spp..

Directory of Open Access Journals (Sweden)

Lesley G Campbell

Full Text Available Since plant mating choices are flexible and responsive to the environment, rates of spontaneous hybridization may vary across ecological clines. Developing a robust and predictive framework for rates of plant gene flow requires assessing the role of environmental sensitivity on plant reproductive traits, relative abundance, and pollen vectors. Therefore, across a soil moisture gradient, we quantified pollinator movement, life-history trait variation, and unidirectional hybridization rates from crop (Raphanus sativus to wild (Raphanus raphanistrum radish populations. Both radish species were grown together in relatively dry (no rain, relatively wet (double rain, or control soil moisture conditions in Ohio, USA. We measured wild and crop radish life-history, phenology and pollinator visitation patterns. To quantify hybridization rates from crop-to-wild species, we used a simply inherited morphological marker to detect F1 hybrid progeny. Although crop-to-wild hybridization did not respond to watering treatments, the abundance of hybrid offspring was higher in fruits produced late in the period of phenological overlap, when both species had roughly equal numbers of open flowers. Therefore, the timing of fruit production and its relationship to flowering overlap may be more important to hybrid zone formation in Raphanus spp. than soil moisture or pollen vector movements.

Locus-dependent selection in crop-wild hybrids of lettuce under field conditions and its implication for GM crop development

OpenAIRE

Hooftman, D.A.P.; Flavell, A.J.; Jansen, J.; Nijs, den, J.C.M.; Syed, N.H.; Sorensen, A.P.; Wengel, ter, P.O.; Wiel, van de, C.C.M.

2011-01-01

Gene escape from crops has gained much attention in the last two decades, as transgenes introgressing into wild populations could affect the latter's ecological characteristics. However, different genes have different likelihoods of introgression. The mixture of selective forces provided by natural conditions creates an adaptive mosaic of alleles from both parental species. We investigated segregation patterns after hybridization between lettuce (Lactuca sativa) and its wild relative, L. serr...

"Founder crops" v. wild plants: Assessing the plant-based diet of the last hunter-gatherers in southwest Asia

Science.gov (United States)

Arranz-Otaegui, Amaia; González Carretero, Lara; Roe, Joe; Richter, Tobias

2018-04-01

The Natufian culture (c. 14.6-11.5 ka cal. BP) represents the last hunter-gatherer society that inhabited southwest Asia before the development of plant food production. It has long been suggested that Natufians based their economy on the exploitation of the wild ancestors of the Neolithic "founder crops", and that these hunter-gatherers were therefore on the "threshold to agriculture". In this work we review the available data on Natufian plant exploitation and we report new archaeobotanical evidence from Shubayqa 1, a Natufian site located in northeastern Jordan (14.6-11.5 ka cal. BP). Shubayqa 1 has produced an exceptionally large plant assemblage, including direct evidence for the continuous exploitation of club-rush tubers (often regarded as "missing foods") and other wild plants, which were probably used as food, fuel and building materials. Taking together this data we evaluate the composition of archaeobotanical assemblages (plant macroremains) from the Natufian to the Early Pre-Pottery Neolithic B (EPPNB). Natufian assemblages comprise large proportions of non-founder plant species (>90% on average), amongst which sedges, small-seeded grasses and legumes, and fruits and nuts predominate. During the Pre-Pottery Neolithic, in particular the EPPNB, the presence of "founder crops" increases dramatically and constitute up to c. 42% of the archaeobotanical assemblages on average. Our results suggest that plant exploitation strategies during the Natufian were very different from those attested during subsequent Neolithic periods. We argue that historically driven interpretations of the archaeological record have over-emphasized the role of the wild ancestors of domesticated crops previous to the emergence of agriculture.

Functional traits differ between cereal crop progenitors and other wild grasses gathered in the Neolithic fertile crescent.

Directory of Open Access Journals (Sweden)

Jennifer Cunniff

Full Text Available The reasons why some plant species were selected as crops and others were abandoned during the Neolithic emergence of agriculture are poorly understood. We tested the hypothesis that the traits of Fertile Crescent crop progenitors were advantageous in the fertile, disturbed habitats surrounding early settlements and in cultivated fields. We screened functional traits related to competition and disturbance in a group of grass species that were increasingly exploited by early plant gatherers, and that were later domesticated (crop progenitors; and in a set of grass species for which there is archaeological evidence of gathering, but which were never domesticated (wild species. We hypothesised that crop progenitors would have greater seed mass, growth rate, height and yield than wild species, as these traits are indicative of greater competitive ability, and that crop progenitors would be more resilient to defoliation. Our results show that crop progenitors have larger seed mass than wild species, germinate faster and have greater seedling size. Increased seed size is weakly but positively correlated with a higher growth rate, which is primarily driven by greater biomass assimilation per unit leaf area. Crop progenitors also tend to have a taller stature, greater grain yield and higher resilience to defoliation. Collectively, the data are consistent with the hypothesis that adaptations to competition and disturbance gave crop progenitors a selective advantage in the areas surrounding early human settlements and in cultivated environments, leading to their adoption as crops through processes of unconscious selection.

Genomic regions under selection in crop-wild hybrids of lettuce: implications for crop breeding and environmental risk assessment

NARCIS (Netherlands)

Hartman, Y.

2012-01-01

The results of this thesis show that the probability of introgression of a putative transgene to wild relatives indeed depends strongly on the insertion location of the transgene. The study of genomic selection patterns can identify crop genomic regions under negative selection in multiple

Potential Implications of Climate Change on Aegilops Species Distribution: Sympatry of These Crop Wild Relatives with the Major European Crop Triticum aestivum and Conservation Issues.

Science.gov (United States)

Ostrowski, Marie-France; Prosperi, Jean-Marie; David, Jacques

2016-01-01

Gene flow from crop to wild relatives is a common phenomenon which can lead to reduced adaptation of the wild relatives to natural ecosystems and/or increased adaptation to agrosystems (weediness). With global warming, wild relative distributions will likely change, thus modifying the width and/or location of co-occurrence zones where crop-wild hybridization events could occur (sympatry). This study investigates current and 2050 projected changes in sympatry levels between cultivated wheat and six of the most common Aegilops species in Europe. Projections were generated using MaxEnt on presence-only data, bioclimatic variables, and considering two migration hypotheses and two 2050 climate scenarios (RCP4.5 and RCP8.5). Overall, a general decline in suitable climatic conditions for Aegilops species outside the European zone and a parallel increase in Europe were predicted. If no migration could occur, the decline was predicted to be more acute outside than within the European zone. The potential sympatry level in Europe by 2050 was predicted to increase at a higher rate than species richness, and most expansions were predicted to occur in three countries, which are currently among the top four wheat producers in Europe: Russia, France and Ukraine. The results are also discussed with regard to conservation issues of these crop wild relatives.

Natural hybridization between a clonally propagated crop, cassava (Manihot esculenta Crantz) and a wild relative in French Guiana.

Science.gov (United States)

Duputié, Anne; David, Patrice; Debain, Chantal; McKey, Doyle

2007-07-01

Because domestication rarely leads to speciation, domesticated populations often hybridize with wild relatives when they occur in close proximity. Little work has focused on this question in clonally propagated crops. If selection on the capacity for sexual reproduction has been relaxed, these crops would not be expected to hybridize with their wild relatives as frequently as seed-propagated crops. Cassava is one of the most important clonally propagated plants in tropical agriculture. Gene flow between cassava and wild relatives has often been postulated, but never demonstrated in nature. We studied a population of a wild Manihot sp. in French Guiana, which was recently in contact with domesticated cassava, and characterized phenotypes (10 morphological traits) and genotypes (six microsatellite loci) of individuals in a transect parallel to the direction of hypothesized gene flow. Wild and domesticated populations were strongly differentiated at microsatellite loci. We identified many hybrids forming a continuum between these two populations, and phenotypic variation was strongly correlated with the degree of hybridization as determined by molecular markers. Analysis of linkage disequilibrium and of the diversity of hybrid pedigrees showed that hybridization has gone on for at least three generations and that no strong barrier prevents admixture of the populations. Hybrids were more heterozygous than either wild or domesticated individuals, and phenotypic comparisons suggested heterosis in vegetative traits. Our results also suggest that this situation is not uncommon, at least in French Guiana, and demonstrate the need for integrated management of wild and domesticated populations even in clonally propagated crops.

Ecogeography and utility to plant breeding of the crop wild relatives of sunflower (Helianthus annuus L.)

NARCIS (Netherlands)

Kantar, M.B.; Sosa, C.C.; Khoury, C.K.; Castaneda-Alvarez, N.P.; Achicanoy, H.A.; Bernau, V.; Kane, N.C.; Marek, L.; Seiler, G.; Rieseberg, L.H.

2015-01-01

Crop wild relatives (CWR) are a rich source of genetic diversity for crop improvement. Combining ecogeographic and phylogenetic techniques can inform both conservation and breeding. Geographic occurrence, bioclimatic, and biophysical data were used to predict species distributions, range overlap and

Locus-dependent selection in crop-wild hybrids of lettuce under field conditions and its implication for GM crop development

NARCIS (Netherlands)

Hooftman, D.A.P.; Flavell, A.J.; Jansen, H.; den Nijs, H.C.M.; Syed, N.H.; Sørensen, A.P.; Orozco-ter Wengel, P.; van de Wiel, C.C.M.

2011-01-01

Gene escape from crops has gained much attention in the last two decades, as transgenes introgressing into wild populations could affect the latter’s ecological characteristics. However, different genes have different likelihoods of introgression. The mixture of selective forces provided by natural

Baseline data on wild flora of crop field boundaries in the agro-ecosystem of pothwar plateau, pakistan

International Nuclear Information System (INIS)

Sarwar, M.; Hussain, I.; Anwar, M.; Ashraf, N.; Mirza, S.N.

2017-01-01

Wild flora along crop field boundaries in farmlands not only increases habitat heterogeneity but also serves multiple beneficial functions. We collected baseline data on wild flora bordering the crop fields of Pothwar plateau. Overall we selected four study sites including two sites of wheat-maize/millet and two of wheat-groundnut cropping system. We recorded 51 species of plants including 12 species of trees, 14 species of shrubs and 25 species of grasses/herbs. Two tree species namely Acacia modesta and Zizyphus mauritiana and two shrub species namely Calotropis procera and Ziziphus nummularia were common indicating their widespread presence in the area. Among herbs/grasses Abutilon indicum, Amaranthus spp., Cyperus rotundus and Erogrostis poroles were common at sites with wheat-maize/millet cropping pattern while Chenopodium album, Datura stramonium and Tribulus terrestris were common at sites with wheat-groundnut cropping system. The tree and shrub densities did not differ significantly among the study sites. Wheat-groundnut cropping system had higher populations/diversity/species of shrubs as compared to wheat-maize/millet cropping system. Density of grasses/herbs significantly differed across the study sites but there was no association of herb/grass density with cropping practice. (author)

Existence of vigorous lineages of crop-wild hybrids in Lettuce under field conditions.

Science.gov (United States)

Hooftman, Danny A P; Hartman, Yorike; Oostermeijer, J Gerard B; Den Nijs, Hans J C M

2009-01-01

Plant to plant gene flow is a route of environmental exposure for GM plants specifically since crosses with wild relatives could lead to the formation of more vigorous hybrids, which could increase the rate of introgression and the environmental impact. Here, we test the first step in the process of potential transgene introgression: whether hybrid vigor can be inherited to the next generation, which could lead to fixation of altered, i.e., elevated, quantitative traits. The potential for a permanent elevated fitness was tested using individual autogamous progeny lineages of hybrids between the crop Lactuca sativa (Lettuce) and the wild species Lactuca serriola (Prickly Lettuce). We compared progeny from motherplants grown under either greenhouse or field conditions. The survival of young plants depended strongly on maternal environment. Furthermore, we observed that offspring reproductive fitness components were correlated with maternal fitness. Our study demonstrates that post-zygotic genotypic sorting at the young plants stage reduces the number of genotypes non-randomly, leading to inheritance of high levels of reproductive traits in the surviving hybrid lineages, compared to the pure wild relatives. Consequently, directional selection could lead to displacement of the pure wild relative and fixation of more vigorous genome segments originating from crops, stabilizing plant traits at elevated levels. Such information can be used to indentify segments which are less likely to introgress into wild relative populations as a target for transgene insertion. © ISBR, EDP Sciences, 2010.

Enhancing the conservation of crop wild relatives in England.

Science.gov (United States)

Fielder, Hannah; Brotherton, Peter; Hosking, Julian; Hopkins, John J; Ford-Lloyd, Brian; Maxted, Nigel

2015-01-01

Humans require resilient, rapidly renewable and sustainable supplies of food and many other plant-derived supplies. However, the combined effects of climate change and population growth compromise the provision of these supplies particularly in respect to global food security. Crop wild relatives (CWR) contain higher genetic diversity than crops and harbour traits that can improve crop resilience and yield through plant breeding. However, in common with most countries, CWR are poorly conserved in England. There is currently no provision for long-term CWR conservation in situ, and comprehensive ex situ collection and storage of CWR is also lacking. However, there is a commitment to achieve their conservation in England's Biodiversity Strategy and the UK has international commitments to do so as part of the Global Plant Conservation Strategy. Here, we identify a series of measures that could enhance the conservation of English CWR, thereby supporting the achievement of these national and international objectives. We provide an inventory of 148 priority English CWR, highlight hotspots of CWR diversity in sites including The Lizard Peninsula, the Dorset coast and Cambridgeshire and suggest appropriate sites for the establishment of a complementary network of genetic reserves. We also identify individual in situ and ex situ priorities for each English CWR. Based on these analyses, we make recommendations whose implementation could provide effective, long-term conservation of English CWR whilst facilitating their use in crop improvement.

Identifying representative crop rotation patterns and grassland loss in the US Western Corn Belt

Energy Technology Data Exchange (ETDEWEB)

Sahajpal, Ritvik; Zhang, Xuesong; Izaurralde, Roberto C.; Gelfand, Ilya; Hurtt, George C.

2014-10-01

Crop rotations (the practice of growing crops on the same land in sequential seasons) reside at the core of agronomic management as they can influence key ecosystem services such as crop yields, carbon and nutrient cycling, soil erosion, water quality, pest and disease control. Despite the availability of the Cropland Data Layer (CDL) which provides remotely sensed data on crop type in the US on an annual basis, crop rotation patterns remain poorly mapped due to the lack of tools that allow for consistent and efficient analysis of multi-year CDLs. This study presents the Representative Crop Rotations Using Edit Distance (RECRUIT) algorithm, implemented as a Python software package, to select representative crop rotations by combining and analyzing multi-year CDLs. Using CDLs from 2010 to 2012 for 5 states in the US Midwest, we demonstrate the performance and parameter sensitivity of RECRUIT in selecting representative crop rotations that preserve crop area and capture land-use changes. Selecting only 82 representative crop rotations accounted for over 90% of the spatio-temporal variability of the more than 13,000 rotations obtained from combining the multi-year CDLs. Furthermore, the accuracy of the crop rotation product compared favorably with total state-wide planted crop area available from agricultural census data. The RECRUIT derived crop rotation product was used to detect land-use conversion from grassland to crop cultivation in a wetland dominated part of the US Midwest. Monoculture corn and monoculture soybean cropping were found to comprise the dominant land-use on the newly cultivated lands.

Crop-emptying rate and the design of pesticide risk assessment schemes in the honey bee and wild bees (Hymenoptera: Apidae).

Science.gov (United States)

Fournier, Alice; Rollin, Orianne; Le Féon, Violette; Decourtye, Axel; Henry, Mickaël

2014-02-01

Recent scientific literature and reports from official sanitary agencies have pointed out the deficiency of current pesticide risk assessment processes regarding sublethal effects on pollinators. Sublethal effects include troubles in learning performance, orientation skills, or mobility, with possible contribution to substantial dysfunction at population scale. However, the study of sublethal effects is currently limited by considerable knowledge gaps, particularly for the numerous pollinators other than the honey bee Apis mellifera L.--the traditional model for pesticide risk assessment in pollinators. Here, we propose to use the crop-emptying time as a rule of thumb to guide the design of oral exposure experiments in the honey bee and wild bees. The administration of contaminated sucrose solutions is typically followed by a fasting time lapse to allow complete assimilation before the behavioral tests. The fasting duration should at least encompass the crop-emptying time, because no absorption takes place in the crop. We assessed crop-emptying rate in fasted bees and how it relates 1) with sucrose solution concentration in the honey bee and 2) with body mass in wild bees. Fasting duration required for complete crop emptying in honey bees fed 20 microl of a 50% sucrose solution was nearly 2 h. Actual fasting durations are usually shorter in toxicological studies, suggesting incomplete crop emptying, and therefore partial assimilation of experimental solutions that could imply underestimation of sublethal effects. We also found faster crop-emptying rates in large wild bees compared with smaller wild bees, and suggest operative rules to adapt sublethal assessment schemes accordingly.

Enhancing the conservation of crop wild relatives in England.

Directory of Open Access Journals (Sweden)

Hannah Fielder

Full Text Available Humans require resilient, rapidly renewable and sustainable supplies of food and many other plant-derived supplies. However, the combined effects of climate change and population growth compromise the provision of these supplies particularly in respect to global food security. Crop wild relatives (CWR contain higher genetic diversity than crops and harbour traits that can improve crop resilience and yield through plant breeding. However, in common with most countries, CWR are poorly conserved in England. There is currently no provision for long-term CWR conservation in situ, and comprehensive ex situ collection and storage of CWR is also lacking. However, there is a commitment to achieve their conservation in England's Biodiversity Strategy and the UK has international commitments to do so as part of the Global Plant Conservation Strategy. Here, we identify a series of measures that could enhance the conservation of English CWR, thereby supporting the achievement of these national and international objectives. We provide an inventory of 148 priority English CWR, highlight hotspots of CWR diversity in sites including The Lizard Peninsula, the Dorset coast and Cambridgeshire and suggest appropriate sites for the establishment of a complementary network of genetic reserves. We also identify individual in situ and ex situ priorities for each English CWR. Based on these analyses, we make recommendations whose implementation could provide effective, long-term conservation of English CWR whilst facilitating their use in crop improvement.

Introgression of wild alleles into the tetraploid peanut crop to improve water use efficiency, earliness and yield.

Directory of Open Access Journals (Sweden)

Wellison F Dutra

Full Text Available The introduction of genes from wild species is a practice little adopted by breeders for the improvement of commercial crops, although it represents an excellent opportunity to enrich the genetic basis and create new cultivars. In peanut, this practice is being increasingly adopted. In this study we present results of introgression of wild alleles from the wild species Arachis duranensis and A. batizocoi improving photosynthetic traits and yield in a set of lines derived from the cross of an induced allotetraploid and cultivated peanut with selection under water stress. The assays were carried out in greenhouse and field focusing on physiological and agronomic traits. A multivariate model (UPGMA was adopted in order to classify drought tolerant lines. Several lines showed improved levels of tolerance, with values similar to or greater than the tolerant control. Two BC1F6 lines (53 P4 and 96 P9 were highlighted for good drought-related traits, earliness and pod yield, having better phenotypic profile to the drought tolerant elite commercial cultivar BR1. These lines are good candidates for the creation of peanut cultivars suitable for production in semiarid environments.

Nutritional evaluation of fodder, its preference and crop raiding by wild Asian elephant (Elephas maximus in Sonitpur District of Assam, India

Directory of Open Access Journals (Sweden)

Bidyut Jyoti Das

2014-12-01

Full Text Available Aim: The present investigation was carried out to evaluate the nutritive value of fodder in natural habitat, cultivated crops and their preference by wild Asian elephant (Elephas maximus in forest and non-forest areas in four seasons using field observation in Sonitpur District of Assam; since, there were frequent incidences of crop raiding by wild elephant leading to loss of property and human-elephant conflict. Materials and Methods: The study was conducted in four seasons. The study included forest areas of Sonai-Rupai Wildlife Sanctuary, part of Nameri National Park and high human-elephant conflicted areas of non-forest near to the sanctuary and parks. The consumed fodders were identified, collected and evaluated. The proximate composition was determined using AOAC (1990. Results: Total 39 different fodder species of 18 families including herbs, climber, grasses, paddy seeds, paddy saplings, plants and its leaves, bark, fruits, and roots were recorded to be utilized by elephants. The first three family of fodder that elephant relished more were Poaceae (46.15%, Musaceae (7.69% and Zingiberaceae (5.13% respectively. The crude protein content of fodder in all seasons, total ash content only in winter and post monsoon seasons and neutral detergent fiber content of fodder between forest and non-forest were significant (p<0.05. Elephants preferred to forage more on nutritionally rich fodder than poor natural fodder. Incidence of crop raiding was more in post monsoon season could be due to availability of nutritionally rich fodder than the poor natural fodder and generally happened in the night. Conclusions: The study revealed that during post monsoon season, there were abundant nutritionally rich sources of cultivated crops than the fodder of natural habitat that might provoke the wild elephants to raid crops. Poaceae shared a major portion of their diet. The findings will definitely help nutritionist, ecologist and policy makers to understand

Community and species-specific responses of wild bees to insect pest control programs applied to a pollinator-dependent crop.

Science.gov (United States)

Tuell, Julianna K; Isaacs, Rufus

2010-06-01

Wild bee conservation is regarded as essential for sustainable production of pollinator-dependent crops, yet little is known about the effects on wild bee communities of typical insect pest management programs used postbloom. We developed an insecticide program risk (IPR) index to quantify the relative risk to wild bees of insecticide programs applied to blueberry fields. This was used to determine the relationship between IPR and the abundance, diversity, and richness of wild bee communities sampled during three successive flowering seasons. In 2 of 3 yr, bee abundance and species richness declined with increasing IPR. Bee diversity declined with IPR in one of 3 yr. These results indicate that wild bee communities are negatively affected by increasingly intensive chemical pest management activities in crop fields and that interyear variability in bee populations has the potential to mask such effects in short-term studies. When several wild bee species were analyzed separately, two of three solitary and one of three social blueberry-foraging species declined with increasing IPR values, suggesting that different life histories and nesting habits may help some bee populations escape the negative effects of insecticides applied after bloom. Pollinator conservation programs aimed strictly at reducing insecticide use may have varying success, depending on the biology of the target bee species. The IPR index provides a standard method to compare pest management programs for their potential effect on wild bee communities, with broad application for use in other agricultural systems.

Sublethal effects of the herbicide glufosinate ammonium on crops and wild plants: short-term effects compared to vegetative recovery and plant reproduction.

Science.gov (United States)

Carpenter, David; Boutin, Céline

2010-10-01

Current guidelines for phytotoxicity testing rely heavily on short-term testing of primarily crop species to predict the sensitivity of non-target, wild plants to herbicides. However, little is known on how plants recover following initial growth inhibitions in standard 14-28 day greenhouse tests conducted for pesticide assessment and registration. The objectives of this study were to assess the ability of plant species to recover (biomass and reproduction) when tested at the juvenile stage (routine regulatory testing), comparing crop and wild species and using the herbicide glufosinate ammonium. Ten crops and 10 wild species were tested with a one-time exposure to glufosinate ammonium in a greenhouse. Half the plants of each species (9 doses × 6 replicates) were harvested 3 weeks after being sprayed (short-term). The remaining plants were harvested several weeks later, coinciding with seed set or natural senescence (long-term). Total aboveground biomass and several endpoints related to crop production and plant reproduction were measured. Calculated IC50 values (dosage that results in a 50% decrease in the biomass of a plant as compared to the untreated controls) based solely on aboveground biomass, for species harvested in the long-term were generally higher than those obtained in the short-term (with two exceptions), indicating recovery over time. Crop species did not differ from wild species in terms of sensitivity. However, in seven out of 12 cases where reproduction was measurable, reproductive endpoints were more sensitive than either short or long-term biomass endpoints, indicating the importance of examining these parameters in phytotoxicity testing. Glufosinate ammonium was found to be phytotoxic at low doses (2.64-7.74% g ai/ha of the label rate).

Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives.

Science.gov (United States)

Hodgins, Kathryn A; Lai, Zhao; Oliveira, Luiz O; Still, David W; Scascitelli, Moira; Barker, Michael S; Kane, Nolan C; Dempewolf, Hannes; Kozik, Alex; Kesseli, Richard V; Burke, John M; Michelmore, Richard W; Rieseberg, Loren H

2014-01-01

Although the Compositae harbours only two major food crops, sunflower and lettuce, many other species in this family are utilized by humans and have experienced various levels of domestication. Here, we have used next-generation sequencing technology to develop 15 reference transcriptome assemblies for Compositae crops or their wild relatives. These data allow us to gain insight into the evolutionary and genomic consequences of plant domestication. Specifically, we performed Illumina sequencing of Cichorium endivia, Cichorium intybus, Echinacea angustifolia, Iva annua, Helianthus tuberosus, Dahlia hybrida, Leontodon taraxacoides and Glebionis segetum, as well 454 sequencing of Guizotia scabra, Stevia rebaudiana, Parthenium argentatum and Smallanthus sonchifolius. Illumina reads were assembled using Trinity, and 454 reads were assembled using MIRA and CAP3. We evaluated the coverage of the transcriptomes using BLASTX analysis of a set of ultra-conserved orthologs (UCOs) and recovered most of these genes (88-98%). We found a correlation between contig length and read length for the 454 assemblies, and greater contig lengths for the 454 compared with the Illumina assemblies. This suggests that longer reads can aid in the assembly of more complete transcripts. Finally, we compared the divergence of orthologs at synonymous sites (Ks) between Compositae crops and their wild relatives and found greater divergence when the progenitors were self-incompatible. We also found greater divergence between pairs of taxa that had some evidence of postzygotic isolation. For several more distantly related congeners, such as chicory and endive, we identified a signature of introgression in the distribution of Ks values. © 2013 John Wiley & Sons Ltd.

A gap analysis methodology for collecting crop genepools: a case study with Phaseolus beans

NARCIS (Netherlands)

Ramírez-Villegas, J.; Khoury, C.K.; Jarvis, A.; Debouck, D.G.; Guarino, L.

2010-01-01

Background The wild relatives of crops represent a major source of valuable traits for crop improvement. These resources are threatened by habitat destruction, land use changes, and other factors, requiring their urgent collection and long-term availability for research and breeding from ex situ

Harnessing Genetic Diversity of Wild Gene Pools to Enhance Wheat Crop Production and Sustainability: Challenges and Opportunities

Directory of Open Access Journals (Sweden)

Carla Ceoloni

2017-12-01

Full Text Available Wild species are extremely rich resources of useful genes not available in the cultivated gene pool. For species providing staple food to mankind, such as the cultivated Triticum species, including hexaploid bread wheat (Triticum aestivum, 6x and tetraploid durum wheat (T. durum, 4x, widening the genetic base is a priority and primary target to cope with the many challenges that the crop has to face. These include recent climate changes, as well as actual and projected demographic growth, contrasting with reduction of arable land and water reserves. All of these environmental and societal modifications pose major constraints to the required production increase in the wheat crop. A sustainable approach to address this task implies resorting to non-conventional breeding strategies, such as “chromosome engineering”. This is based on cytogenetic methodologies, which ultimately allow for the incorporation into wheat chromosomes of targeted, and ideally small, chromosomal segments from the genome of wild relatives, containing the gene(s of interest. Chromosome engineering has been successfully applied to introduce into wheat genes/QTL for resistance to biotic and abiotic stresses, quality attributes, and even yield-related traits. In recent years, a substantial upsurge in effective alien gene exploitation for wheat improvement has come from modern technologies, including use of molecular markers, molecular cytogenetic techniques, and sequencing, which have greatly expanded our knowledge and ability to finely manipulate wheat and alien genomes. Examples will be provided of various types of stable introgressions, including pyramiding of different alien genes/QTL, into the background of bread and durum wheat genotypes, representing valuable materials for both species to respond to the needed novelty in current and future breeding programs. Challenging contexts, such as that inherent to the 4x nature of durum wheat when compared to 6x bread wheat, or

Ecogeography and utility to plant breeding of the crop wild relatives of sunflower (Helianthus annuus L.

Directory of Open Access Journals (Sweden)

Michael Benjamin Kantar

2015-10-01

Full Text Available Crop wild relatives (CWR are a rich source of genetic diversity for crop improvement. Combining ecogeographic and phylogenetic techniques can inform both conservation and breeding. Geographic occurrence, bioclimatic, and biophysical data were used to predict species distributions, range overlap and niche occupancy in 36 taxa closely related to sunflower (Helianthus annuus L.. Taxa lacking comprehensive ex situ conservation were identified. The predicted distributions for 36 Helianthus taxa identified substantial range overlap and asymmetry and niche conservatism. Specific taxa (e.g., Helianthus deblis Nutt., Helianthus anomalus Blake, and Helianthus divaricatus L. were identified as targets for traits of interest, particularly for abiotic stress tolerance and adaptation to extreme soil properties. The combination of techniques demonstrates the potential for publicly available ecogeographic and phylogenetic data to facilitate the identification of possible sources of abiotic stress traits for plant breeding programs. Much of the primary genepool (wild H. annuus occurs in extreme environments indicating that introgression of targeted traits may be relatively straightforward. Sister taxa in Helianthus have greater range overlap than more distantly related taxa within the genus. This adds to a growing body of literature suggesting that in plants (unlike some animal groups, geographic isolation may not be necessary for speciation.

Ecogeography and utility to plant breeding of the crop wild relatives of sunflower (Helianthus annuus L.)

Science.gov (United States)

Kantar, Michael B.; Sosa, Chrystian C.; Khoury, Colin K.; Castañeda-Álvarez, Nora P.; Achicanoy, Harold A.; Bernau, Vivian; Kane, Nolan C.; Marek, Laura; Seiler, Gerald; Rieseberg, Loren H.

2015-01-01

Crop wild relatives (CWR) are a rich source of genetic diversity for crop improvement. Combining ecogeographic and phylogenetic techniques can inform both conservation and breeding. Geographic occurrence, bioclimatic, and biophysical data were used to predict species distributions, range overlap and niche occupancy in 36 taxa closely related to sunflower (Helianthus annuus L.). Taxa lacking comprehensive ex situ conservation were identified. The predicted distributions for 36 Helianthus taxa identified substantial range overlap, range asymmetry and niche conservatism. Specific taxa (e.g., Helianthus deblis Nutt., Helianthus anomalus Blake, and Helianthus divaricatus L.) were identified as targets for traits of interest, particularly for abiotic stress tolerance, and adaptation to extreme soil properties. The combination of techniques demonstrates the potential for publicly available ecogeographic and phylogenetic data to facilitate the identification of possible sources of abiotic stress traits for plant breeding programs. Much of the primary genepool (wild H. annuus) occurs in extreme environments indicating that introgression of targeted traits may be relatively straightforward. Sister taxa in Helianthus have greater range overlap than more distantly related taxa within the genus. This adds to a growing body of literature suggesting that in plants (unlike some animal groups), geographic isolation may not be necessary for speciation. PMID:26500675

Sampling wild species to conserve genetic diversity

Science.gov (United States)

Sampling seed from natural populations of crop wild relatives requires choice of the locations to sample from and the amount of seed to sample. While this may seem like a simple choice, in fact careful planning of a collector’s sampling strategy is needed to ensure that a crop wild collection will ...

Australian wild rice reveals pre-domestication origin of polymorphism deserts in rice genome.

Science.gov (United States)

Krishnan S, Gopala; Waters, Daniel L E; Henry, Robert J

2014-01-01

Rice is a major source of human food with a predominantly Asian production base. Domestication involved selection of traits that are desirable for agriculture and to human consumers. Wild relatives of crop plants are a source of useful variation which is of immense value for crop improvement. Australian wild rices have been isolated from the impacts of domestication in Asia and represents a source of novel diversity for global rice improvement. Oryza rufipogon is a perennial wild progenitor of cultivated rice. Oryza meridionalis is a related annual species in Australia. We have examined the sequence of the genomes of AA genome wild rices from Australia that are close relatives of cultivated rice through whole genome re-sequencing. Assembly of the resequencing data to the O. sativa ssp. japonica cv. Nipponbare shows that Australian wild rices possess 2.5 times more single nucleotide polymorphisms than in the Asian wild rice and cultivated O. sativa ssp. indica. Analysis of the genome of domesticated rice reveals regions of low diversity that show very little variation (polymorphism deserts). Both the perennial and annual wild rice from Australia show a high degree of conservation of sequence with that found in cultivated rice in the same 4.58 Mbp region on chromosome 5, which suggests that some of the 'polymorphism deserts' in this and other parts of the rice genome may have originated prior to domestication due to natural selection. Analysis of genes in the 'polymorphism deserts' indicates that this selection may have been due to biotic or abiotic stress in the environment of early rice relatives. Despite having closely related sequences in these genome regions, the Australian wild populations represent an invaluable source of diversity supporting rice food security.

Australian wild rice reveals pre-domestication origin of polymorphism deserts in rice genome.

Directory of Open Access Journals (Sweden)

Gopala Krishnan S

Full Text Available BACKGROUND: Rice is a major source of human food with a predominantly Asian production base. Domestication involved selection of traits that are desirable for agriculture and to human consumers. Wild relatives of crop plants are a source of useful variation which is of immense value for crop improvement. Australian wild rices have been isolated from the impacts of domestication in Asia and represents a source of novel diversity for global rice improvement. Oryza rufipogon is a perennial wild progenitor of cultivated rice. Oryza meridionalis is a related annual species in Australia. RESULTS: We have examined the sequence of the genomes of AA genome wild rices from Australia that are close relatives of cultivated rice through whole genome re-sequencing. Assembly of the resequencing data to the O. sativa ssp. japonica cv. Nipponbare shows that Australian wild rices possess 2.5 times more single nucleotide polymorphisms than in the Asian wild rice and cultivated O. sativa ssp. indica. Analysis of the genome of domesticated rice reveals regions of low diversity that show very little variation (polymorphism deserts. Both the perennial and annual wild rice from Australia show a high degree of conservation of sequence with that found in cultivated rice in the same 4.58 Mbp region on chromosome 5, which suggests that some of the 'polymorphism deserts' in this and other parts of the rice genome may have originated prior to domestication due to natural selection. CONCLUSIONS: Analysis of genes in the 'polymorphism deserts' indicates that this selection may have been due to biotic or abiotic stress in the environment of early rice relatives. Despite having closely related sequences in these genome regions, the Australian wild populations represent an invaluable source of diversity supporting rice food security.

Estimation of in situ mating systems in wild sorghum (Sorghum ...

Indian Academy of Sciences (India)

The high outcrossing rates of wild/weedy sorghum populations in Ethiopia indicate a high potential for crop genes (including transgenes) to spread within the wild pool. Therefore, effective risk management strategies may be needed if the introgression of transgenes or other crop genes from improved cultivars into wild or ...

Testing the validity of a Cd soil quality standard in representative Mediterranean agricultural soils under an accumulator crop

International Nuclear Information System (INIS)

Recatala, L.; Sanchez, J.; Arbelo, C.; Sacristan, D.

2010-01-01

The validity of a quality standard for cadmium (Cd) in representative agricultural Mediterranean soils under an accumulator crop (Lactuca sativa L.) is evaluated in this work considering both its effect on the crop growth (biomass production) and the metal accumulation in the edible part of the plant. Four soils with different properties relevant to regulate the behaviour of heavy metals were selected from the Valencian Region, a representative area of the European Mediterranean Region. For all soils, the effective concentration of added Cd causing 50% inhibition (EC 50 ) on the biomass production was much higher than the minimum legal concentration used to declare soils as contaminated by cadmium, i.e. 100 times the baseline value for Cd, in Spain (Spanish Royal Decree 9/2005). As expected, Cd toxicity in the crop was higher in the soils having less carbonate content. On the other hand, for all soils, from the second dose on, which represents 10-times the baseline value for Cd, the metal content in crops exceeded the maximum level established for leaf crops by the European legislation (Regulation EC no. 466/2001). Soil salinity and coarse textures make the accumulation of Cd in the edible part of the plant easier. Therefore, the legal baseline soil cadmium content established by the Spanish legislation seems not valid neither from the point of view of the effect on the crop growth nor from the point of view of the metal accumulation in the edible part of the plant. In order to realistically declare contaminated soils by heavy metals, soil quality standards should be proposed taking into account the soil properties. Further research in other agricultural areas of the region would improve the basis for proposing adequate soil quality standards for heavy metals as highlighted by the European Thematic Strategy for Soil Protection.

Testing the validity of a Cd soil quality standard in representative Mediterranean agricultural soils under an accumulator crop

Energy Technology Data Exchange (ETDEWEB)

Recatala, L., E-mail: luis.recatala@uv.es [Departamento de Planificacion Territorial, Centro de Investigaciones sobre Desertificacion-CIDE (CSIC-Universitat de Valencia-Generalitat Valenciana), Cami de la Marjal S/N, 46470 Albal (Valencia) (Spain); Sanchez, J. [Departamento de Planificacion Territorial, Centro de Investigaciones sobre Desertificacion-CIDE (CSIC-Universitat de Valencia-Generalitat Valenciana), Cami de la Marjal S/N, 46470 Albal (Valencia) (Spain); Arbelo, C. [Departamento de Edafologia y Geologia, Facultad de Biologia, Universidad de La Laguna, 38206 La Laguna (Tenerife), Islas Canarias (Spain); Sacristan, D. [Departamento de Planificacion Territorial, Centro de Investigaciones sobre Desertificacion-CIDE (CSIC-Universitat de Valencia-Generalitat Valenciana), Cami de la Marjal S/N, 46470 Albal (Valencia) (Spain)

2010-12-01

The validity of a quality standard for cadmium (Cd) in representative agricultural Mediterranean soils under an accumulator crop (Lactuca sativa L.) is evaluated in this work considering both its effect on the crop growth (biomass production) and the metal accumulation in the edible part of the plant. Four soils with different properties relevant to regulate the behaviour of heavy metals were selected from the Valencian Region, a representative area of the European Mediterranean Region. For all soils, the effective concentration of added Cd causing 50% inhibition (EC{sub 50}) on the biomass production was much higher than the minimum legal concentration used to declare soils as contaminated by cadmium, i.e. 100 times the baseline value for Cd, in Spain (Spanish Royal Decree 9/2005). As expected, Cd toxicity in the crop was higher in the soils having less carbonate content. On the other hand, for all soils, from the second dose on, which represents 10-times the baseline value for Cd, the metal content in crops exceeded the maximum level established for leaf crops by the European legislation (Regulation EC no. 466/2001). Soil salinity and coarse textures make the accumulation of Cd in the edible part of the plant easier. Therefore, the legal baseline soil cadmium content established by the Spanish legislation seems not valid neither from the point of view of the effect on the crop growth nor from the point of view of the metal accumulation in the edible part of the plant. In order to realistically declare contaminated soils by heavy metals, soil quality standards should be proposed taking into account the soil properties. Further research in other agricultural areas of the region would improve the basis for proposing adequate soil quality standards for heavy metals as highlighted by the European Thematic Strategy for Soil Protection.

Endemic wild potato (Solanum spp.) biodiversity status in Bolivia: Reasons for conservation concerns

NARCIS (Netherlands)

Cadima Fuentes, X.; Zonneveld, van M.; Scheldeman, X.; Castaneda, N.; Patino, F.; Beltran, M.; Damme, van P.

2014-01-01

Crop wild relatives possess important traits, therefore ex situ and in situ conservation efforts are essential to maintain sufficient options for crop improvement. Bolivia is a centre of wild relative diversity for several crops, among them potato, which is an important staple worldwide and the

Introgression from cultivated rice alters genetic structures of wild relative populations: implications for in situ conservation

Science.gov (United States)

Jin, Xin; Chen, Yu; Liu, Ping; Li, Chen; Cai, Xingxing; Rong, Jun

2018-01-01

Abstract Maintaining genetic integrity is essential for in situ and ex situ conservation of crop wild relative (CWR) species. However, introgression of crop alleles into CWR species/populations may change their genetic structure and diversity, resulting in more invasive weeds or, in contrast, the extinction of endangered populations. To determine crop-wild introgression and its consequences, we examined the genetic structure and diversity of six wild rice (Oryza rufipogon) populations under in situ conservation in China. Thirty-four simple sequence repeat (SSR) and 34 insertion/deletion markers were used to genotype the wild rice populations and two sets of rice cultivars (O. sativa), corresponding to the two types of molecular markers. Shared alleles and STRUCTURE analyses suggested a variable level of crop-wild introgression and admixture. Principal coordinates and cluster analyses indicated differentiation of wild rice populations, which was associated with the spatial distances to cultivated rice fields. The level of overall genetic diversity was comparable between wild rice populations and rice cultivars, but a great number of wild-specific alleles was detected in the wild populations. We conclude based on the results that crop-wild introgression can considerably alter the pattern of genetic structure and relationships of CWR populations. Appropriate measures should be taken for effective in situ conservation of CWR species under the scenario of crop-wild introgression. PMID:29308123

A Bayesian analysis of gene flow from crops to their wild relatives: cultivated (Lactuca sativa L.) and prickly lettuce (L. serriola L.) and the recent expansion of L. serriola in Europe.

Science.gov (United States)

Uwimana, Brigitte; D'Andrea, Luigi; Felber, François; Hooftman, Danny A P; Den Nijs, Hans C M; Smulders, Marinus J M; Visser, Richard G F; Van De Wiel, Clemens C M

2012-06-01

Interspecific gene flow can lead to the formation of hybrid populations that have a competitive advantage over the parental populations, even for hybrids from a cross between crops and wild relatives. Wild prickly lettuce (Lactuca serriola) has recently expanded in Europe and hybridization with the related crop species (cultivated lettuce, L. sativa) has been hypothesized as one of the mechanisms behind this expansion. In a basically selfing species, such as lettuce, assessing hybridization in natural populations may not be straightforward. Therefore, we analysed a uniquely large data set of plants genotyped with SSR (simple sequence repeat) markers with two programs for Bayesian population genetic analysis, STRUCTURE and NewHybrids. The data set comprised 7738 plants, including a complete genebank collection, which provided a wide coverage of cultivated germplasm and a fair coverage of wild accessions, and a set of wild populations recently sampled across Europe. STRUCTURE analysis inferred the occurrence of hybrids at a level of 7% across Europe. NewHybrids indicated these hybrids to be advanced selfed generations of a hybridization event or of one backcross after such an event, which is according to expectations for a basically selfing species. These advanced selfed generations could not be detected effectively with crop-specific alleles. In the northern part of Europe, where the expansion of L. serriola took place, the fewest putative hybrids were found. Therefore, we conclude that other mechanisms than crop/wild gene flow, such as an increase in disturbed habitats and/or climate warming, are more likely explanations for this expansion. © 2012 Blackwell Publishing Ltd.

A Bayesian analysis of gene flow from crops to their wild relatives: cultivated (Lactuca sativa L.) and prickly lettuce (L. serriola L.) and the recent expansion of L. serriola in Europe

NARCIS (Netherlands)

Uwimana, B; D'andrea, L.; Felber, F.; Hooftman, D.A.P.; den Nijs, H.C.M.; Smulders, M.J.M.; Visser, R.G.F.; van de Wiel, C.C.M.

2012-01-01

Interspecific gene flow can lead to the formation of hybrid populations that have a competitive advantage over the parental populations, even for hybrids from a cross between crops and wild relatives. Wild prickly lettuce (Lactuca serriola) has recently expanded in Europe and hybridization with the

Genotyping by Sequencing and Genome–Environment Associations in Wild Common Bean Predict Widespread Divergent Adaptation to Drought

Directory of Open Access Journals (Sweden)

Andrés J. Cortés

2018-02-01

Full Text Available Drought will reduce global crop production by >10% in 2050 substantially worsening global malnutrition. Breeding for resistance to drought will require accessing crop genetic diversity found in the wild accessions from the driest high stress ecosystems. Genome–environment associations (GEA in crop wild relatives reveal natural adaptation, and therefore can be used to identify adaptive variation. We explored this approach in the food crop Phaseolus vulgaris L., characterizing 86 geo-referenced wild accessions using genotyping by sequencing (GBS to discover single nucleotide polymorphisms (SNPs. The wild beans represented Mesoamerica, Guatemala, Colombia, Ecuador/Northern Peru and Andean groupings. We found high polymorphism with a total of 22,845 SNPs across the 86 accessions that confirmed genetic relationships for the groups. As a second objective, we quantified allelic associations with a bioclimatic-based drought index using 10 different statistical models that accounted for population structure. Based on the optimum model, 115 SNPs in 90 regions, widespread in all 11 common bean chromosomes, were associated with the bioclimatic-based drought index. A gene coding for an ankyrin repeat-containing protein and a phototropic-responsive NPH3 gene were identified as potential candidates. Genomic windows of 1 Mb containing associated SNPs had more positive Tajima’s D scores than windows without associated markers. This indicates that adaptation to drought, as estimated by bioclimatic variables, has been under natural divergent selection, suggesting that drought tolerance may be favorable under dry conditions but harmful in humid conditions. Our work exemplifies that genomic signatures of adaptation are useful for germplasm characterization, potentially enhancing future marker-assisted selection and crop improvement.

Irrigation method does not affect wild bee pollinators of hybrid sunflower

Directory of Open Access Journals (Sweden)

Hillary Sardiñas

2016-09-01

Full Text Available Irrigation method has the potential to directly or indirectly influence populations of wild bee crop pollinators nesting and foraging in irrigated crop fields. The majority of wild bee species nest in the ground, and their nests may be susceptible to flooding. In addition, their pollination of crops can be influenced by nectar quality and quantity, which are related to water availability. To determine whether different irrigation methods affect crop pollinators, we compared the number of ground-nesting bees nesting and foraging in drip- and furrow-irrigated hybrid sunflower fields in the Sacramento Valley. We found that irrigation method did not impact wild bee nesting rates or foraging bee abundance or bee species richness. These findings suggest that changing from furrow irrigation to drip irrigation to conserve water likely will not alter hybrid sunflower crop pollination.

Wild bees enhance honey bees’ pollination of hybrid sunflower

Science.gov (United States)

Greenleaf, Sarah S.; Kremen, Claire

2006-01-01

Pollinators are required for producing 15–30% of the human food supply, and farmers rely on managed honey bees throughout the world to provide these services. Yet honey bees are not always the most efficient pollinators of all crops and are declining in various parts of the world. Crop pollination shortages are becoming increasingly common. We found that behavioral interactions between wild and honey bees increase the pollination efficiency of honey bees on hybrid sunflower up to 5-fold, effectively doubling honey bee pollination services on the average field. These indirect contributions caused by interspecific interactions between wild and honey bees were more than five times more important than the contributions wild bees make to sunflower pollination directly. Both proximity to natural habitat and crop planting practices were significantly correlated with pollination services provided directly and indirectly by wild bees. Our results suggest that conserving wild habitat at the landscape scale and altering selected farm management techniques could increase hybrid sunflower production. These findings also demonstrate the economic importance of interspecific interactions for ecosystem services and suggest that protecting wild bee populations can help buffer the human food supply from honey bee shortages. PMID:16940358

Wild bees enhance honey bees' pollination of hybrid sunflower.

Science.gov (United States)

Greenleaf, Sarah S; Kremen, Claire

2006-09-12

Pollinators are required for producing 15-30% of the human food supply, and farmers rely on managed honey bees throughout the world to provide these services. Yet honey bees are not always the most efficient pollinators of all crops and are declining in various parts of the world. Crop pollination shortages are becoming increasingly common. We found that behavioral interactions between wild and honey bees increase the pollination efficiency of honey bees on hybrid sunflower up to 5-fold, effectively doubling honey bee pollination services on the average field. These indirect contributions caused by interspecific interactions between wild and honey bees were more than five times more important than the contributions wild bees make to sunflower pollination directly. Both proximity to natural habitat and crop planting practices were significantly correlated with pollination services provided directly and indirectly by wild bees. Our results suggest that conserving wild habitat at the landscape scale and altering selected farm management techniques could increase hybrid sunflower production. These findings also demonstrate the economic importance of interspecific interactions for ecosystem services and suggest that protecting wild bee populations can help buffer the human food supply from honey bee shortages.

Experimental evidence that wildflower strips increase pollinator visits to crops.

Science.gov (United States)

Feltham, Hannah; Park, Kirsty; Minderman, Jeroen; Goulson, Dave

2015-08-01

Wild bees provide a free and potentially diverse ecosystem service to farmers growing pollination-dependent crops. While many crops benefit from insect pollination, soft fruit crops, including strawberries are highly dependent on this ecosystem service to produce viable fruit. However, as a result of intensive farming practices and declining pollinator populations, farmers are increasingly turning to commercially reared bees to ensure that crops are adequately pollinated throughout the season. Wildflower strips are a commonly used measure aimed at the conservation of wild pollinators. It has been suggested that commercial crops may also benefit from the presence of noncrop flowers; however, the efficacy and economic benefits of sowing flower strips for crops remain relatively unstudied. In a study system that utilizes both wild and commercial pollinators, we test whether wildflower strips increase the number of visits to adjacent commercial strawberry crops by pollinating insects. We quantified this by experimentally sowing wildflower strips approximately 20 meters away from the crop and recording the number of pollinator visits to crops with, and without, flower strips. Between June and August 2013, we walked 292 crop transects at six farms in Scotland, recording a total of 2826 pollinators. On average, the frequency of pollinator visits was 25% higher for crops with adjacent flower strips compared to those without, with a combination of wild and commercial bumblebees (Bombus spp.) accounting for 67% of all pollinators observed. This effect was independent of other confounding effects, such as the number of flowers on the crop, date, and temperature. Synthesis and applications. This study provides evidence that soft fruit farmers can increase the number of pollinators that visit their crops by sowing inexpensive flower seed mixes nearby. By investing in this management option, farmers have the potential to increase and sustain pollinator populations over time.

Modelling the consequences of crop-wild relative gene flow: A sensitivity analysis of the effects of outcrossing rates and hybrid vigour breakdown in Lactuca

NARCIS (Netherlands)

Hooftman, D.A.P.; Oostermeijer, J.G.B.; Marquard, E.; den Nijs, J.C.M.

2008-01-01

1. Hybridization between crops and their wild relatives may enhance invasiveness and change their niche dynamics. This is regarded as a major biosafety problem in terms of the development of noxious, invasive weeds and the loss of the genetic identity of native species. Modelling the consequences of

Evaluation of wild animals browsing preferences in forage resources

Directory of Open Access Journals (Sweden)

Giovanni Argenti

2017-09-01

Full Text Available Excessive presence of wild ungulates can produce negative effects on herbaceous crops or woody species, and to face this problem, habitat improvements are often performed to recreate suitable environments for a given animal species and to attract animals far from cultivated crops. A common example of these interventions is represented by grassland restoration and to evaluate the real animal preferences on restored forage resources a proper trial was established in a hilly area of Tuscany (central Italy, inside the historical Park of Pratolino, near Florence. The trial compared six different forage species or mixtures sown in plots: vegetal material was represented by two pure stands (Onobrychis viciifolia and Medicago sativa and four mixtures differing in number and kind of used species. Plots were utilised only by wild animals occurring in the area. Data collection consisted of botanical samples in each plot in different periods to obtain the percent presence of each species. At the same time, a visual estimation of animal intake on all occurring species was performed to obtain the browsing ratio of single species and overall defoliation rate for each species/mixture. Moreover, six camera traps were placed on the boundary of the experimental site to record videos of wild animals browsing in the area for identification of animals actually occurring on different plots and for comparison of these results with botanical data. Vegetation surveys permitted a proper evaluation of animals intake and of their feeding preferences. In general, sown species performed a major role in animal browsing, even if in some periods also a few native species (such as Plantago lanceolata or Cichorium intybus were utilised in a strong way, depending on vegetation context and existing biomass. Camera traps results permitted the identification of browsing animal species (mainly represented by roe deer and plots frequentation resulted to be highly related to animal

Abundance and Diversity of Wild Bees (Hymenoptera: Apoidea) Found in Lowbush Blueberry Growing Regions of Downeast Maine.

Science.gov (United States)

Bushmann, Sara L; Drummond, Francis A

2015-08-01

Insect-mediated pollination is critical for lowbush blueberry (Ericaceae: Vaccinium angustifolium Aiton) fruit development. Past research shows a persistent presence of wild bees (Hymenoptera: Apoidea) providing pollination services even when commercial pollinators are present. We undertook the study to 1) provide a description of bee communities found in lowbush blueberry-growing regions, 2) identify field characteristics or farm management practices that influence those communities, 3) identify key wild bee pollinators that provide pollination services for the blueberry crop, and 4) identify non-crop plants found within the cropping system that provide forage for wild bees. During a 4-year period, we collected solitary and eusocial bees in over 40 fields during and after blueberry bloom, determining a management description for each field. We collected 4,474 solitary bees representing 124 species and 1,315 summer bumble bees representing nine species. No bumble bee species were previously unknown in Maine, yet we document seven solitary bee species new for the state. These include species of the genera Nomada, Lasioglossum, Calliopsis, and Augochloropsis. No field characteristic or farm management practice related to bee community structure, except bumble bee species richness was higher in certified organic fields. Pollen analysis determined scopal loads of 67-99% ericaceous pollen carried by five species of Andrena. Our data suggest two native ericaceous plants, Kalmia angustifolia L. and Gaylussacia baccata (Wangenheim), provide important alternative floral resources. We conclude that Maine blueberry croplands are populated with a species-rich bee community that fluctuates in time and space. We suggest growers develop and maintain wild bee forage and nest sites. © The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Pollinator communities in strawberry crops - variation at multiple spatial scales.

Science.gov (United States)

Ahrenfeldt, E J; Klatt, B K; Arildsen, J; Trandem, N; Andersson, G K S; Tscharntke, T; Smith, H G; Sigsgaard, L

2015-08-01

Predicting potential pollination services of wild bees in crops requires knowledge of their spatial distribution within fields. Field margins can serve as nesting and foraging habitats for wild bees and can be a source of pollinators. Regional differences in pollinator community composition may affect this spill-over of bees. We studied how regional and local differences affect the spatial distribution of wild bee species richness, activity-density and body size in crop fields. We sampled bees both from the field centre and at two different types of semi-natural field margins, grass strips and hedges, in 12 strawberry fields. The fields were distributed over four regions in Northern Europe, representing an almost 1100 km long north-south gradient. Even over this gradient, daytime temperatures during sampling did not differ significantly between regions and did therefore probably not impact bee activity. Bee species richness was higher in field margins compared with field centres independent of field size. However, there was no difference between centre and margin in body-size or activity-density. In contrast, bee activity-density increased towards the southern regions, whereas the mean body size increased towards the north. In conclusion, our study revealed a general pattern across European regions of bee diversity, but not activity-density, declining towards the field interior which suggests that the benefits of functional diversity of pollinators may be difficult to achieve through spill-over effects from margins to crop. We also identified dissimilar regional patterns in bee diversity and activity-density, which should be taken into account in conservation management.

Wild and domesticated mushroom consumption in Nigeria ...

African Journals Online (AJOL)

African Crop Science Journal ... On the other hand, if nutrition analysis reveals different nutrition parameters for both types of mushrooms, 43.3% opted for cultivated mushroom, 42.2%, wild; 12.2% both; while 2.2% would eat ... Keywords: Consumption pattern, Lentinus squarrosulus, nutrition, perception, wild mushroom ...

Genomics Strategies for Germplasm Characterization and the Development of Climate Resilient Crops

Directory of Open Access Journals (Sweden)

Robert eHenry

2014-02-01

Full Text Available Food security requires the development and deployment of crop varieties resilient to climate variation and change. The study of variations in the genome of wild plant populations can be used to guide crop improvement. Genome variation found in wild crop relatives may be directly relevant to the breeding of environmentally adapted and climate resilient crops. Analysis of the genomes of populations growing in contrasting environments will reveal the genes subject to natural selection in adaptation to climate variations. Whole genome sequencing of these populations should define the numbers and types of genes associated with climate adaptation. This strategy is facilitated by recent advances in sequencing technologies. Wild relatives of rice and barley have been used to assess these approaches. This strategy is most easily applied to species for which a high quality reference genome sequence is available and where populations of wild relatives can be found growing in diverse environments or across environmental gradients.

Wild bees visiting cucumber on midwestern U.S. organic farms benefit from near-farm semi-natural areas.

Science.gov (United States)

Smith, A A; Bentley, M; Reynolds, H L

2013-02-01

Wild bees that provide pollination services to vegetable crops depend on forage resources, nesting sites, and overwintering sites in the agricultural landscape. The scale at which crop-visiting bees use resources in the landscape can vary regionally, and has not been characterized in the Midwestern United States. We investigated the effects of seminatural land cover on wild bee visitation frequency to cucumber (Cucumis sativus L.) and on wild bee species richness on 10 organic farms in Indiana. We estimated the spatial scale at which the effects of land cover were strongest, and also examined the effects of nonlandscape factors on wild bees. The visitation frequency of wild bees to cucumber was positively related to the proportion of seminatural land in the surrounding landscape, and this relationship was strongest within 250 m of the cucumber patch. The species richness of wild cucumber visitors was not affected by land cover at any spatial scale, nor by any of the nonlandscape factors we considered. Our results indicate that wild, crop visiting bees benefit from seminatural areas in the agricultural landscape, and benefit most strongly from seminatural areas within 250 m of the crop field. This suggests that setting aside natural areas in the near vicinity of vegetable fields may be an effective way to support wild, crop-visiting bees and secure their pollination services.

Modeling the status, trends, and impacts of wild bee abundance in the United States.

Science.gov (United States)

Koh, Insu; Lonsdorf, Eric V; Williams, Neal M; Brittain, Claire; Isaacs, Rufus; Gibbs, Jason; Ricketts, Taylor H

2016-01-05

Wild bees are highly valuable pollinators. Along with managed honey bees, they provide a critical ecosystem service by ensuring stable pollination to agriculture and wild plant communities. Increasing concern about the welfare of both wild and managed pollinators, however, has prompted recent calls for national evaluation and action. Here, for the first time to our knowledge, we assess the status and trends of wild bees and their potential impacts on pollination services across the coterminous United States. We use a spatial habitat model, national land-cover data, and carefully quantified expert knowledge to estimate wild bee abundance and associated uncertainty. Between 2008 and 2013, modeled bee abundance declined across 23% of US land area. This decline was generally associated with conversion of natural habitats to row crops. We identify 139 counties where low bee abundances correspond to large areas of pollinator-dependent crops. These areas of mismatch between supply (wild bee abundance) and demand (cultivated area) for pollination comprise 39% of the pollinator-dependent crop area in the United States. Further, we find that the crops most highly dependent on pollinators tend to experience more severe mismatches between declining supply and increasing demand. These trends, should they continue, may increase costs for US farmers and may even destabilize crop production over time. National assessments such as this can help focus both scientific and political efforts to understand and sustain wild bees. As new information becomes available, repeated assessments can update findings, revise priorities, and track progress toward sustainable management of our nation's pollinators.

Ribosomal DNA variation in finger millet and wild species of Eleusine (Poaceae).

Science.gov (United States)

Hilu, K W; Johnson, J L

1992-04-01

Finger millet is an important cereal crop in the semi-arid regions of Africa and India. The crop belongs to the grass genus Eleusine, which includes nine annual and perennial species native to Africa except for the New World species E. tristachya. Ribosomal DNA (rDNA) variation in finger millet and related wild species was used to provide information on the origin of the genomes of this tetraploid crop and point out genetic relationships of the crop to other species in the genus. The restriction endonucleases used revealed a lack of variability in the rDNA spacer region in domesticated finger millet. All the rDNA variants of the crop were found in the proposed direct tetraploid ancestor, E. coracana subsp. africana. Wild and domesticated finger millet displayed the phenotypes found in diploid E. indica. Diploid Eleusine tristachya showed some similarity to the crop in some restriction sites. The remaining species were quite distinct in rDNA fragment patterns. The study supports the direct origin of finger millet from subspecies africana shows E. indica to be one of the genome donors of the crop, and demonstrates that none of the other species examined could have donated the second genome of the crop. The rDNA data raise the possibility that wild and domesticated finger millet could have originated as infraspecific polyploid hybrids from different varieties of E. indica.

Parameterization of the InVEST Crop Pollination Model to spatially predict abundance of wild blueberry (Vaccinium angustifolium Aiton) native bee pollinators in Maine, USA

Science.gov (United States)

Groff, Shannon C.; Loftin, Cynthia S.; Drummond, Frank; Bushmann, Sara; McGill, Brian J.

2016-01-01

Non-native honeybees historically have been managed for crop pollination, however, recent population declines draw attention to pollination services provided by native bees. We applied the InVEST Crop Pollination model, developed to predict native bee abundance from habitat resources, in Maine's wild blueberry crop landscape. We evaluated model performance with parameters informed by four approaches: 1) expert opinion; 2) sensitivity analysis; 3) sensitivity analysis informed model optimization; and, 4) simulated annealing (uninformed) model optimization. Uninformed optimization improved model performance by 29% compared to expert opinion-informed model, while sensitivity-analysis informed optimization improved model performance by 54%. This suggests that expert opinion may not result in the best parameter values for the InVEST model. The proportion of deciduous/mixed forest within 2000 m of a blueberry field also reliably predicted native bee abundance in blueberry fields, however, the InVEST model provides an efficient tool to estimate bee abundance beyond the field perimeter.

Salmonella spp. dynamics in wild blueberry, Vaccinium angustifolium Aiton

Science.gov (United States)

A six-year field study was conducted in the two major wild, or lowbush, blueberry growing regions in Maine, Midcoast and Downeast. This study used data from two cropping cycles (four years) to model the dynamics of Salmonella spp. prevalence in wild blueberry fields (Vaccinium angustifolium Aiton). ...

Domesticated proboscidea parviflora: a potential oilseed crop for arid lands

Energy Technology Data Exchange (ETDEWEB)

Berry, J.; Bretting, P.K.; Nabhan, G.P.; Weber, C.

1981-01-01

Wild and domesticated Proboscidea parviflora were evaluated as oilseed crops for arid lands through chemical and biological analyses. Domesticated plants grown in the Sonoran desert bore seed containing 35-40 per cent oil and 23-27 per cent protein. Yield per hectare was estimated at 1000 kg of oil and 675 kg of protein, quantities which compare favourably with other crops. An ephemeral life cycle and certain characteristics of the fruit and seed allow this plant to grow in xeric habitats unsuitable for many other plants. Several Proboscidea species hybridize with P. parviflora and could be used in future crop breeding. Rapid germination and higher oil and protein content of seed make the domesticated P. parviflora superior to the wild form as a crop. Domesticated P. parviflora thus shows promise as an oilseed crop for the Sonoran Desert and possibly for other arid regions. (Refs. 22).

Genetic analysis of wild apple resources in Shandong province ...

African Journals Online (AJOL)

Jane

2011-08-22

Aug 22, 2011 ... Apple (malus domestica Borkh.), which is a widely cultivated, important and economic fruit crop with nutritive and medicinal importance, has emerged as a model horticultural crop in this post-genomic era. Wild apple resources are important and they develop gradually in apple industry and genetic diversity.

Genetic analysis of wild apple resources in Shandong province ...

African Journals Online (AJOL)

Apple (malus domestica Borkh.), which is a widely cultivated, important and economic fruit crop with nutritive and medicinal importance, has emerged as a model horticultural crop in this post-genomic era. Wild apple resources are important and they develop gradually in apple industry and genetic diversity. In this study, two ...

Exploiting Genomic Resources for Efficient Conservation and Use of Chickpea, Groundnut, and Pigeonpea Collections for Crop Improvement

Directory of Open Access Journals (Sweden)

C. L. Laxmipathi Gowda

2013-11-01

Full Text Available Both chickpea ( L. and pigeonpea [ (L. Millsp.] are important dietary source of protein while groundnut ( L. is one of the major oil crops. Globally, approximately 1.1 million grain legume accessions are conserved in genebanks, of which the ICRISAT genebank holds 49,485 accessions of cultivated species and wild relatives of chickpea, pigeonpea, and groundnut from 133 countries. These genetic resources are reservoirs of many useful genes for present and future crop improvement programs. Representative subsets in the form of core and mini core collections have been used to identify trait-specific genetically diverse germplasm for use in breeding and genomic studies in these crops. Chickpea, groundnut, and pigeonpea have moved from “orphan” to “genomic resources rich crops.” The chickpea and pigeonpea genomes have been decoded, and the sequences of groundnut genome will soon be available. With the availability of these genomic resources, the germplasm curators, breeders, and molecular biologists will have abundant opportunities to enhance the efficiency of genebank operations, mine allelic variations in germplasm collection, identify genetically diverse germplasm with beneficial traits, broaden the cultigen’s genepool, and accelerate the cultivar development to address new challenges to production, particularly with respect to climate change and variability. Marker-assisted breeding approaches have already been initiated for some traits in chickpea and groundnut, which should lead to enhanced efficiency and efficacy of crop improvement. Resistance to some pests and diseases has been successfully transferred from wild relatives to cultivated species.

Non-bee insects are important contributors to global crop pollination

NARCIS (Netherlands)

Rader, Romina; Bartomeus, Ignasi; Garibaldi, Lucas A.; Kleijn, David; Scheper, Jeroen

2016-01-01

Wild andmanaged bees arewell documented as effective pollinators of global crops of economic importance. However, the contributions by pollinators other than bees have been little explored despite their potential to contribute to crop production and stability in the face of environmental change.

DEMAND FOR WILD BLUEBERRIES AT FARM AND PROCESSOR LEVELS

OpenAIRE

Cheng, Hsiang-Tai; Peavey, Stephanie R.; Kezis, Alan S.

2000-01-01

The wild blueberry crop harvested in Maine and eastern Canada has increased considerably in recent years. The purpose of this study is to understand the recent trends in demand for wild blueberries with particular attention to the effects of production and the marketing of wild and cultivated blueberries. A price response model was developed to analyze farm-gate price and the processor price, using annual data from 1978 through 1997. Key explanatory variables in the model include quantity of ...

The semi-wild oil palm and its industry in Africa

NARCIS (Netherlands)

Zeven, A.C.

1967-01-01

The oil palm (Elaeis quineensis Jacq.) is of great importance to the people of West Tropical and Equatorial Africa. This palm is there a major food crop under semi-wild conditions and since the end of the 18th century a principal commercial crop. In the first chapters the centres of

Complex tritrophic interactions in response to crop domestication: predictions from the wild

NARCIS (Netherlands)

Chen, Y.H.; Gols, R.; Stratton, C.A.; Brevik, K.A.; Benrey, B.

2015-01-01

Crop domestication is the process of artificially selecting plants to increase their suitability to human tastes and cultivated growing conditions. There is increasing evidence that crop domestication can profoundly alter interactions among plants, herbivores, and their natural enemies. However,

Hybridization rates between lettuce (Lactuca sativa) and its wild relative (L. serriola) under field conditions.

Science.gov (United States)

D'Andrea, Luigi; Felber, François; Guadagnuolo, Roberto

2008-01-01

Hybridization and introgression between crops and wild relatives may have important evolutionary and ecological consequences such as gene swamping or increased invasiveness. In the present study, we investigated hybridization under field conditions between crop lettuce (Lactuca sativa) and its wild relative prickly lettuce (L. serriola), two cross-compatible, predominantly autogamous and insect pollinated species. In 2003 and 2004, we estimated the rates of hybridization between L. sativa and L. serriola in close-to-reality field experiments carried out in two locations of Northern Switzerland. Seeds set by the experimental wild plants were collected and sown (44 352 in 2003 and 252 345 in 2004). Progeny was screened morphologically for detecting natural hybrids. Prior to the experiment, specific RAPD markers were used to confirm that morphological characters were reliable for hybrid identification. Hybridization occurred up to the maximal distance tested (40 m), and hybridization rates varied between 0 to 26%, decreasing with distance. More than 80% of the wild plants produced at least one hybrid (incidence of hybridization, IH) at 0 m and 1 m. It equaled 4 to 5% at 40 m. In sympatric crop-wild populations, cross-pollination between cultivated lettuce and its wild relative has to be seen as the rule rather than the exception for short distances.

Origin and diversity of an underutilized fruit tree crop, cempedak (Artocarpus integer, Moraceae).

Science.gov (United States)

Wang, Maria M H; Gardner, Elliot M; Chung, Richard C K; Chew, Ming Yee; Milan, Abd Rahman; Pereira, Joan T; Zerega, Nyree J C

2018-06-06

Underutilized crops and their wild relatives are important resources for crop improvement and food security. Cempedak [Artocarpus integer (Thunb). Merr.] is a significant crop in Malaysia but underutilized elsewhere. Here we performed molecular characterization of cempedak and its putative wild relative bangkong (Artocarpus integer (Thunb). Merr. var. silvestris Corner) to address questions regarding the origin and diversity of cempedak. Using data from 12 microsatellite loci, we assessed the genetic diversity and genetic/geographic structure for 353 cempedak and 175 bangkong accessions from Malaysia and neighboring countries and employed clonal analysis to characterize cempedak cultivars. We conducted haplotype network analyses on the trnH-psbA region in a subset of these samples. We also analyzed key vegetative characters that reportedly differentiate cempedak and bangkong. We show that cempedak and bangkong are sister taxa and distinct genetically and morphologically, but the directionality of domestication origin is unclear. Genetic diversity was generally higher in bangkong than in cempedak. We found a distinct genetic cluster for cempedak from Borneo as compared to cempedak from Peninsular Malaysia. Finally, cempedak cultivars with the same names did not always share the same genetic fingerprint. Cempedak origins are complex, with likely admixture and hybridization with bangkong, warranting further investigation. We provide a baseline of genetic diversity of cempedak and bangkong in Malaysia and found that germplasm collections in Malaysia represent diverse coverage of the four cempedak genetic clusters detected. © 2018 Botanical Society of America.

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

DEFF Research Database (Denmark)

Xu, Xun; Liu, Xin; Ge, Song

2012-01-01

Rice is a staple crop that has undergone substantial phenotypic and physiological changes during domestication. Here we resequenced the genomes of 40 cultivated accessions selected from the major groups of rice and 10 accessions of their wild progenitors (Oryza rufipogon and Oryza nivara) to >15 x...... diversity in cultivated but not wild rice, which represent candidate regions selected during domestication. Some of these variants are associated with important biological features, whereas others have yet to be functionally characterized. The molecular markers we have identified should be valuable...... raw data coverage. We investigated genome-wide variation patterns in rice and obtained 6.5 million high-quality single nucleotide polymorphisms (SNPs) after excluding sites with missing data in any accession. Using these population SNP data, we identified thousands of genes with significantly lower...

A genetic analysis of the introgression process from cultivated lettuce (Lactuca sativa L.) to wild prickly lettuce (L. serriola L.)

NARCIS (Netherlands)

Uwimana, B.

2011-01-01

Many plant species can hybridise and produce fertile offspring. Hybridization between cultivated species and their wild relatives has raised concerns with regard to GM crops, as it constitutes a possible route along which the transgene could disperse from crops into related wild species,

Environmental, phenotypic and genetic variation of wild barley (Hordeum spontaneum) from Israel

NARCIS (Netherlands)

Vanhala, T.; Rijn, C.P.E.; Buntjer, J.; Stam, P.; Nevo, E.; Poorter, H.; Eeuwijk, van F.A.

2004-01-01

Wild relatives of crop plants offer an attractive gene pool for cultivar improvement. We evaluated genetic and phenotypic variation for a set of 72 Israeli accessions of wild barley from 21 populations. These populations were grouped further into four ecotypes. In addition, environmental variables

Quantitative inheritance of crop timing traits in interspecific hybrid Petunia populations and interactions with crop quality parameters.

Science.gov (United States)

Warner, Ryan M; Walworth, Aaron E

2010-01-01

The leaf unfolding rate (i.e., development rate) and the number of nodes forming prior to floral initiation are 2 factors determining production times for floriculture crops. Wild relative species of the cultivated petunia (Petunia x hybrida Vilm.) that exhibited faster development rates than modern cultivars and may therefore be useful genetic sources to develop cultivars with decreased production time were identified. Three interspecific F(2) families, Petunia exserta Stehmann x P. axillaris (Lam.) Britton et al., P. x hybrida 'Mitchell' x P. axillaris, and P. axillaris x P. integrifolia (Hook.) Schinz & Thell. all exhibited transgressive segregation for development rate and node number below the first flower. Development rate and time to flower segregated independently in all families. Leaf number below the first flower was positively correlated with leaf unfolding rate in all families except P. axillaris x P. integrifolia. Time to flower was positively correlated with flower bud number in the P. x hybrida 'Mitchell' x P. axillaris and P. axillaris x P. integrifolia families only. Based on these results, wild Petunia germplasm should be useful for developing petunia cultivars with reduced crop production times, but some negative effects on crop quality parameters may need to be overcome.

Contribution of insect pollinators to crop yield and quality varies with agricultural intensification

Directory of Open Access Journals (Sweden)

Ignasi Bartomeus

2014-03-01

Full Text Available Background. Up to 75% of crop species benefit at least to some degree from animal pollination for fruit or seed set and yield. However, basic information on the level of pollinator dependence and pollinator contribution to yield is lacking for many crops. Even less is known about how insect pollination affects crop quality. Given that habitat loss and agricultural intensification are known to decrease pollinator richness and abundance, there is a need to assess the consequences for different components of crop production.Methods. We used pollination exclusion on flowers or inflorescences on a whole plant basis to assess the contribution of insect pollination to crop yield and quality in four flowering crops (spring oilseed rape, field bean, strawberry, and buckwheat located in four regions of Europe. For each crop, we recorded abundance and species richness of flower visiting insects in ten fields located along a gradient from simple to heterogeneous landscapes.Results. Insect pollination enhanced average crop yield between 18 and 71% depending on the crop. Yield quality was also enhanced in most crops. For instance, oilseed rape had higher oil and lower chlorophyll contents when adequately pollinated, the proportion of empty seeds decreased in buckwheat, and strawberries’ commercial grade improved; however, we did not find higher nitrogen content in open pollinated field beans. Complex landscapes had a higher overall species richness of wild pollinators across crops, but visitation rates were only higher in complex landscapes for some crops. On the contrary, the overall yield was consistently enhanced by higher visitation rates, but not by higher pollinator richness.Discussion. For the four crops in this study, there is clear benefit delivered by pollinators on yield quantity and/or quality, but it is not maximized under current agricultural intensification. Honeybees, the most abundant pollinator, might partially compensate the loss of wild

Contribution of insect pollinators to crop yield and quality varies with agricultural intensification.

Science.gov (United States)

Bartomeus, Ignasi; Potts, Simon G; Steffan-Dewenter, Ingolf; Vaissière, Bernard E; Woyciechowski, Michal; Krewenka, Kristin M; Tscheulin, Thomas; Roberts, Stuart P M; Szentgyörgyi, Hajnalka; Westphal, Catrin; Bommarco, Riccardo

2014-01-01

Background. Up to 75% of crop species benefit at least to some degree from animal pollination for fruit or seed set and yield. However, basic information on the level of pollinator dependence and pollinator contribution to yield is lacking for many crops. Even less is known about how insect pollination affects crop quality. Given that habitat loss and agricultural intensification are known to decrease pollinator richness and abundance, there is a need to assess the consequences for different components of crop production. Methods. We used pollination exclusion on flowers or inflorescences on a whole plant basis to assess the contribution of insect pollination to crop yield and quality in four flowering crops (spring oilseed rape, field bean, strawberry, and buckwheat) located in four regions of Europe. For each crop, we recorded abundance and species richness of flower visiting insects in ten fields located along a gradient from simple to heterogeneous landscapes. Results. Insect pollination enhanced average crop yield between 18 and 71% depending on the crop. Yield quality was also enhanced in most crops. For instance, oilseed rape had higher oil and lower chlorophyll contents when adequately pollinated, the proportion of empty seeds decreased in buckwheat, and strawberries' commercial grade improved; however, we did not find higher nitrogen content in open pollinated field beans. Complex landscapes had a higher overall species richness of wild pollinators across crops, but visitation rates were only higher in complex landscapes for some crops. On the contrary, the overall yield was consistently enhanced by higher visitation rates, but not by higher pollinator richness. Discussion. For the four crops in this study, there is clear benefit delivered by pollinators on yield quantity and/or quality, but it is not maximized under current agricultural intensification. Honeybees, the most abundant pollinator, might partially compensate the loss of wild pollinators in

Genomic and environmental selection patterns in two distinct lettuce crop–wild hybrid crosses

Science.gov (United States)

Hartman, Yorike; Uwimana, Brigitte; Hooftman, Danny A P; Schranz, Michael E; van de Wiel, Clemens C M; Smulders, Marinus J M; Visser, Richard G F; van Tienderen, Peter H

2013-01-01

Genomic selection patterns and hybrid performance influence the chance that crop (trans)genes can spread to wild relatives. We measured fitness(-related) traits in two different field environments employing two different crop–wild crosses of lettuce. We performed quantitative trait loci (QTL) analyses and estimated the fitness distribution of early- and late-generation hybrids. We detected consistent results across field sites and crosses for a fitness QTL at linkage group 7, where a selective advantage was conferred by the wild allele. Two fitness QTL were detected on linkage group 5 and 6, which were unique to one of the crop–wild crosses. Average hybrid fitness was lower than the fitness of the wild parent, but several hybrid lineages outperformed the wild parent, especially in a novel habitat for the wild type. In early-generation hybrids, this may partly be due to heterosis effects, whereas in late-generation hybrids transgressive segregation played a major role. The study of genomic selection patterns can identify crop genomic regions under negative selection across multiple environments and cultivar–wild crosses that might be applicable in transgene mitigation strategies. At the same time, results were cultivar-specific, so that a case-by-case environmental risk assessment is still necessary, decreasing its general applicability. PMID:23789025

Wild Maid, Wild Soul, A Wild Wild Weed: Niki de Saint Phalle’s Fierce Femininities, c. 1960-66

Directory of Open Access Journals (Sweden)

Amelia Jones

2015-11-01

Full Text Available Self-described as “wild maid,” “wild soul,” “a wild wild weed,” Niki de Saint Phalle narrated herself as artistic subject in a concerted way that stands out in the history of art: as both creatively driven and emotionally renegade and excessive, as both definitively woman and definitively artist. In this essay I take this special case of self-narration, and the particular power of St. Phalle’s work, as an opportunity to explore the relationship between.(auto-biography and artistic practice. The case of St. Phalle, a radical sculptor, performance artist, writer, and filmmaker, allows us to understand the exaggerated way in which women artists were until very recently forced to adopt “fierce femininities” to make a place for themselves as artists. In this way, I suggest that St. Phalle represents a key inspirational force opening the door for second wave feminism and the feminist art movement.

Collection of wild Helianthus anomalus and deserticola sunflower from the desert southwest USA

Science.gov (United States)

Genetic resources are the biological basis of global food security. Collection and preservation of wild relatives of important crop species such as sunflower provide the basic foundation to improve and sustain the crop. Acquisition through exploration is the initial step in the germplasm conservatio...

The food and environmental safety of Bt crops

Science.gov (United States)

Koch, Michael S.; Ward, Jason M.; Levine, Steven L.; Baum, James A.; Vicini, John L.; Hammond, Bruce G.

2015-01-01

Bacillus thuringiensis (Bt) microbial pesticides have a 50-year history of safety in agriculture. Cry proteins are among the active insecticidal ingredients in these pesticides, and genes coding for Cry proteins have been introduced into agricultural crops using modern biotechnology. The Cry gene sequences are often modified to enable effective expression in planta and several Cry proteins have been modified to increase biological activity against the target pest(s). Additionally, the domains of different but structurally conserved Cry proteins can be combined to produce chimeric proteins with enhanced insecticidal properties. Environmental studies are performed and include invertebrates, mammals, and avian species. Mammalian studies used to support the food and feed safety assessment are also used to support the wild mammal assessment. In addition to the NTO assessment, the environmental assessment includes a comparative assessment between the Bt crop and the appropriate conventional control that is genetically similar but lacks the introduced trait to address unintended effects. Specific phenotypic, agronomic, and ecological characteristics are measured in the Bt crop and the conventional control to evaluate whether the introduction of the insect resistance has resulted in any changes that might cause ecological harm in terms of altered weed characteristics, susceptibility to pests, or adverse environmental impact. Additionally, environmental interaction data are collected in field experiments for Bt crop to evaluate potential adverse effects. Further to the agronomic and phenotypic evaluation, potential movement of transgenes from a genetically modified crop plants into wild relatives is assessed for a new pest resistance gene in a new crop. This review summarizes the evidence for safety of crops containing Cry proteins for humans, livestock, and other non-target organisms. PMID:25972882

The food and environmental safety of Bt crops.

Science.gov (United States)

Koch, Michael S; Ward, Jason M; Levine, Steven L; Baum, James A; Vicini, John L; Hammond, Bruce G

2015-01-01

Bacillus thuringiensis (Bt) microbial pesticides have a 50-year history of safety in agriculture. Cry proteins are among the active insecticidal ingredients in these pesticides, and genes coding for Cry proteins have been introduced into agricultural crops using modern biotechnology. The Cry gene sequences are often modified to enable effective expression in planta and several Cry proteins have been modified to increase biological activity against the target pest(s). Additionally, the domains of different but structurally conserved Cry proteins can be combined to produce chimeric proteins with enhanced insecticidal properties. Environmental studies are performed and include invertebrates, mammals, and avian species. Mammalian studies used to support the food and feed safety assessment are also used to support the wild mammal assessment. In addition to the NTO assessment, the environmental assessment includes a comparative assessment between the Bt crop and the appropriate conventional control that is genetically similar but lacks the introduced trait to address unintended effects. Specific phenotypic, agronomic, and ecological characteristics are measured in the Bt crop and the conventional control to evaluate whether the introduction of the insect resistance has resulted in any changes that might cause ecological harm in terms of altered weed characteristics, susceptibility to pests, or adverse environmental impact. Additionally, environmental interaction data are collected in field experiments for Bt crop to evaluate potential adverse effects. Further to the agronomic and phenotypic evaluation, potential movement of transgenes from a genetically modified crop plants into wild relatives is assessed for a new pest resistance gene in a new crop. This review summarizes the evidence for safety of crops containing Cry proteins for humans, livestock, and other non-target organisms.

The Food and Environmental Safety of Bt Crops

Directory of Open Access Journals (Sweden)

Michael Stephen Koch

2015-04-01

Full Text Available Bt (Bacillus thuringiensis microbial pesticides have a 50-year history of safe use in agriculture. Cry proteins are among the active insecticidal ingredients in these pesticides, and genes coding for Cry proteins have been introduced into agricultural crops using modern biotechnology. The Cry gene sequences are often modified to enable effective expression in planta and several Cry proteins have been modified to increase biological activity against the target pest(s. Additionally, the domains of different but structurally conserved Cry proteins can be combined to produce chimeric proteins with enhanced insecticidal properties. Environmental studies are performed and include invertebrates, mammals and avian species. Mammalian studies used to support the food and feed safety assessment are also used to support the wild mammal assessment. In addition to the NTO assessment, the environmental assessment includes a comparative assessment between the Bt crop and the appropriate conventional control that is genetically similar but lacks the introduced trait to address unintended effects. Specific phenotypic, agronomic, and ecological characteristics are measured in the Bt crop and the conventional control to evaluate whether the introduction of the insect resistance has resulted in any changes that might cause ecological harm in terms of altered weed characteristics, susceptibility to pests, or adverse environmental impact. Additionally, environmental interaction data are collected in field experiments for Bt crop to evaluate potential adverse effects. Further to the agronomic and phenotypic evaluation, potential movement of transgenes from a genetically modified crop plants into wild relatives is assessed for a new pest resistance gene in a new crop. This review summarizes the evidence for safety of crops containing Cry proteins for humans, livestock, and other non-target organisms.

Impacts of domestication on the arbuscular mycorrhizal symbiosis of 27 crop species.

Science.gov (United States)

Martín-Robles, Nieves; Lehmann, Anika; Seco, Erica; Aroca, Ricardo; Rillig, Matthias C; Milla, Rubén

2018-04-01

The arbuscular mycorrhizal (AM) symbiosis is key to plant nutrition, and hence is potentially key in sustainable agriculture. Fertilization and other agricultural practices reduce soil AM fungi and root colonization. Such conditions might promote the evolution of low mycorrhizal responsive crops. Therefore, we ask if and how evolution under domestication has altered AM symbioses of crops. We measured the effect of domestication on mycorrhizal responsiveness across 27 crop species and their wild progenitors. Additionally, in a subset of 14 crops, we tested if domestication effects differed under contrasting phosphorus (P) availabilities. The response of AM symbiosis to domestication varied with P availability. On average, wild progenitors benefited from the AM symbiosis irrespective of P availability, while domesticated crops only profited under P-limited conditions. Magnitudes and directions of response were diverse among the 27 crops, and were unrelated to phylogenetic affinities or to the coordinated evolution with fine root traits. Our results indicate disruptions in the efficiency of the AM symbiosis linked to domestication. Under high fertilization, domestication could have altered the regulation of resource trafficking between AM fungi and associated plant hosts. Provided that crops are commonly raised under high fertilization, this result has important implications for sustainable agriculture. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

Annual dynamics of wild bee densities: attractiveness and productivity effects of oilseed rape.

Science.gov (United States)

Riedinger, Verena; Mitesser, Oliver; Hovestadt, Thomas; Steffan-Dewenter, Ingolf; Holzschuh, Andrea

2015-05-01

Mass-flowering crops may affect long-term population dynamics, but effects on pollinators have never been studied across several years. We monitored wild bees in oilseed rape fields in 16 landscapes in Germany in two consecutive years. Effects on bee densities of landscape oilseed rape cover in the years of monitoring and in the previous years were evaluated with landscape data from three consecutive years. We fit empirical data to a mechanistic model to provide estimates for oilseed rape attractiveness and its effect on bee productivity in comparison to the rest of the landscape, and we evaluated consequences for pollinator densities in consecutive years. Our results show that high oilseed rape cover in the previous year enhances current densities of wild bees (except for bumble bees). Moreover, we show a strong attractiveness of and dilution on (i.e., decreasing bee densities with increasing landscape oilseed rape cover) oilseed rape for bees during flowering in the current year, modifying the effect of the previous year's oilseed rape cover in the case of wild bees (excluding Bombus). As long as other factors such as nesting sites or natural enemies do not limit bee reproduction, our findings suggest long-term positive effects of mass-flowering crops on bee populations, at least for non-Bombus generalists, which possibly help to maintain crop pollination services even when crop area increases. Similar effects are conceivable for other organisms providing ecosystem services in annual crops and should be considered in future studies.

Seed coating with a neonicotinoid insecticide negatively affects wild bees.

Science.gov (United States)

Rundlöf, Maj; Andersson, Georg K S; Bommarco, Riccardo; Fries, Ingemar; Hederström, Veronica; Herbertsson, Lina; Jonsson, Ove; Klatt, Björn K; Pedersen, Thorsten R; Yourstone, Johanna; Smith, Henrik G

2015-05-07

Understanding the effects of neonicotinoid insecticides on bees is vital because of reported declines in bee diversity and distribution and the crucial role bees have as pollinators in ecosystems and agriculture. Neonicotinoids are suspected to pose an unacceptable risk to bees, partly because of their systemic uptake in plants, and the European Union has therefore introduced a moratorium on three neonicotinoids as seed coatings in flowering crops that attract bees. The moratorium has been criticized for being based on weak evidence, particularly because effects have mostly been measured on bees that have been artificially fed neonicotinoids. Thus, the key question is how neonicotinoids influence bees, and wild bees in particular, in real-world agricultural landscapes. Here we show that a commonly used insecticide seed coating in a flowering crop can have serious consequences for wild bees. In a study with replicated and matched landscapes, we found that seed coating with Elado, an insecticide containing a combination of the neonicotinoid clothianidin and the non-systemic pyrethroid β-cyfluthrin, applied to oilseed rape seeds, reduced wild bee density, solitary bee nesting, and bumblebee colony growth and reproduction under field conditions. Hence, such insecticidal use can pose a substantial risk to wild bees in agricultural landscapes, and the contribution of pesticides to the global decline of wild bees may have been underestimated. The lack of a significant response in honeybee colonies suggests that reported pesticide effects on honeybees cannot always be extrapolated to wild bees.

An improved micropropagation system, ex vitro rooting and validation of genetic homogeneity in wild female Momordica dioica: an underutilized nutraceutical vegetable crop.

Science.gov (United States)

Choudhary, Sumitra Kumari; Patel, Ashok Kumar; Harish; Shekhawat, Smita; Shekhawat, Narpat S

2017-07-01

Momordica dioica Roxb. ex Willd., is a perennial and dioecious (2n = 28) plant of family Cucurbitaceae. Conventional methods of propagation through seeds, stem cuttings and rhizomatous/tuberous roots are inadequate for its mass cultivation as a vegetable crop. This paper reports an improved and efficient micropropagation method for wild female M. dioica using nodal explants. Shoot amplification was achieved using subculturing of in vitro raised shoots on MS medium supplemented with various concentrations of 6-benzylaminopurine (BAP) alone or in combination with indole-3-acetic acid (IAA). The maximum number of shoots (45.30 ± 3.83) with an average length 6.52 ± 0.89 cm were differentiated on MS medium containing 0.5 mg L -1 BAP, 0.1 mg L -1 IAA and additives (50 mg L -1 ascorbic acid, 25 mg L -1 each of adenine sulphate, citric acid and l-arginine). The cloned shoots were rooted ex vitro. Each shoot treated with 250 mg L -1 IBA for 5 min produced 12.3 ± 1.33 with a mean length 5.4 ± 0.73 cm. More than 85% (46 plants) of ex vitro rooted plantlets were successfully hardened in a greenhouse with normal growth characteristics. In order to evaluate the genetic stability of micropropagated plants, the two PCR-based techniques, Random Amplified Polymorphic DNA (RAPD) and Inter Simple Sequence Repeats (ISSR) were used. The amplification patterns of the micropropagated and mother plant were monomorphic thus depicting genetic stability of the micropropagation system. This protocol could be effectively employed for the mass multiplication of wild female M. dioica , a popular summer vegetable crop.

Comparative Methods of Application of Wild Plant Parts on Growth and in the Control of Root Rot Fungi of Leguminous Crops

International Nuclear Information System (INIS)

Ikram, N.; Dawae, S.

2016-01-01

Present research work was carried out for the management of root rot fungi with wild plant part capsules and pellets formulation in soil. When application of pellets and capsules was carried out with Prosopis juliflora stem, leaves and flowers showed significant reduction in disease incidence and enhancement in growth and physiological parameters. Colonization of Fusarium spp., Macrophomina phaseolina and Rhizoctonia solani was completely suppressed when P. juliflora leaves pellets incorporated in soil. Physiological parameters such as chlorophyll a and b and protein were significantly increased when leaves pellets incorporated in soil at the rate of 1 percent w/w so P. juliflora leaves pellets were most effective in the control of root rot fungi and enhanced the growth of crop plants. (author)

Population genetics of foxtail millet and its wild ancestor

Directory of Open Access Journals (Sweden)

Wang Yongfang

2010-10-01

Full Text Available Abstract Background Foxtail millet (Setaria italica (L. P. Beauv., one of the most ancient domesticated crops, is becoming a model system for studying biofuel crops and comparative genomics in the grasses. However, knowledge on the level of genetic diversity and linkage disequilibrium (LD is very limited in this crop and its wild ancestor, green foxtail (Setaria viridis (L. P. Beauv.. Such information would help us to understand the domestication process of cultivated species and will allow further research in these species, including association mapping and identification of agricultural significant genes involved in domestication. Results In this study, we surveyed DNA sequence for nine loci across 50 accessions of cultivated foxtail millet and 34 of its wild progenitor. We found a low level of genetic diversity in wild green foxtail (θ = 0.0059, θ means Watterson's estimator of θ. Despite of a 55% loss of its wild diversity, foxtail millet still harbored a considerable level of diversity (θ = 0.0027 when compared to rice and sorghum (θ = 0.0024 and 0.0034, respectively. The level of LD in the domesticated foxtail millet extends to 1 kb, while it decayed rapidly to a negligible level within 150 bp in wild green foxtail. Using coalescent simulation, we estimated the bottleneck severity at k = 0.6095 when ρ/θ = 1. These results indicated that the domestication bottleneck of foxtail millet was more severe than that of maize but slightly less pronounced than that of rice. Conclusions The results in this study establish a general framework for the domestication history of foxtail millet. The low level of genetic diversity and the increased level of LD in foxtail millet are mainly caused by a population bottleneck, although gene flow from foxtail millet to green foxtail is another factor that may have shaped the pattern of genetic diversity of these two related gene pools. The knowledge provided in this study will benefit future population

Genealogy, morphology and fitness of spontaneous hybrids between wild and cultivated chicory (Cichorium intybus)

DEFF Research Database (Denmark)

Kiær, Lars Pødenphant; Philipp, M.; Bagger Jørgensen, Rikke

2007-01-01

Crop species are known to hybridize spontaneously with wild relatives, but few studies have characterized the performance of hybrids at various genealogies, life stages and environments. A group of cultivar-like individuals and potential hybrids were observed in a roadside population of wild chic...

Evaluation of Growth Indices and Estimation Seed Yield Loss Threshold of Canola in Response to Various Densities of Crop and Wild Mustard

Directory of Open Access Journals (Sweden)

Z Anafjeh

2012-02-01

Full Text Available ABSTRACT In order to study the effect of various densities of wild mustard (Sinapis arvensis L. on growth indices of Canola (Brassica napus L. in climate of Molathani, Ahvaz, an experiment was conducted in the experimental field of Ramin Agricultural and Natural Resources University, in 2006-2007. The split-plot set of treatments was arranged within randomized complete block design with four replications. Treatments included of wild mustard at five levels (0, 7, 14, 21 and 35 plants m2 and Canola at three densities (60, 80 and 100 plants m2. The results showed that the increase in mustard density rates lead to decreasing total dry matter, leaf area index, crop growth rate, relative growth rate and mean pod dry matter in three canola densities (60, 80 and 100 plants m2. Somewhat the lowest growth indices was obtained in 35 plants mustard (that is the highest mustard density. In addition damage rate of mustard decreased canola seed yield for 7, 14, 21 and 35 plants mustard up to 61, 71, 76 and 91%, respectively. Keywords: Plant density, Competition, Yield loss threshold, Growth indices, Canola, Mustard

Analysis of Powdery Mildew Resistance in Wild Melon MLO Mutants

Directory of Open Access Journals (Sweden)

Cheng Hong

2015-11-01

Full Text Available Wild species have a potential value in crop breeding. Explore MLO gene which related with powdery mildew natural resistance is very important for improving the quality of melon. Resistance to powdery mildew was examined in cultivar and wild species by leaf inoculation. The wild germplasms showed resistance to powdery mildew Race1. Cloning and sequence analysis of the CmMLO2 gene identified an 85 bp difference between the wild and cultivated species. The CmMLO2 gene was expressed in the wild germplasm after fluorescence-labeled Agrobacterium-mediated transformation. A positive transgenic plant showed successful invasion by powdery mildew Race1. These results suggested that the wild species might have failed to encode the MLO protein, thereby resulting in the MLO-negative regulation of powdery mildew, which in turn resulted in the broad-spectrum resistance of the wild species to powdery mildew.

The responses of crop - wild Brassica hybrids to simulated herbivory and interspecific competition: implications for transgene introgression.

Science.gov (United States)

Sutherland, Jamie P; Justinova, Lenka; Poppy, Guy M

2006-01-01

Brassica rapa grows as a wild and weedy species throughout the world and is the most likely recipient of transgenes from GM oilseed rape. For transgene introgression to occur, the critical step which must be realized, is the formation of an F1 hybrid. Concerns exist that hybrid populations could be more vigorous and competitive compared to the parental species. This study examines the effect of simulated herbivory and interspecific competition on the vegetative and reproductive performance of non-transgenic F1 hybrids and their parental lines. Several vegetative and reproductive performance measures were used to determine the effect of simulated herbivory and competition on the Brassica lines, including leaf length and biomass for herbivory and seedling height and biomass for competition. For defoliation experiments, B. rapa showed little response in terms of leaf length but B. napus and the F1 hybrid responded negatively. Brassica rapa showed elevated biomass responses, but B. napus and the hybrid demonstrated negative responses to defoliation. Defoliation at the cotyledon stage had a slight effect upon final biomass with the F1 hybrid performing significantly worse than B. napus, although seed counts were not significantly different. For the series of competition experiments, hybrids seemed to be more similar to B. rapa in terms of early seedling growth and reproductive measures. The underperformance of hybrid plants when challenged by herbivory and competition, could potentially decrease survivorship and explain the rarity of hybrids in field surveys. However, should transgene introgression occur, the dynamics of hybrids could change radically thus increasing the risk of gene flow from a transgenic oilseed rape crop to the wild recipient.

New carrot and garlic germplasm to advance breeding and understand crop origins

Science.gov (United States)

The genetic variation provided by diverse plant germplasm is the basic building material used for crop improvement that shapes the crops we grow today. Wild carrot from the U.S. provided the cytoplasm used to develop a reliable system to produce hybrid carrots that account for most of the commercial...

Response of wild bees (Hymenoptera: Apoidea: Anthophila) to surrounding land cover in Wisconsin pickling cucumber.

Science.gov (United States)

Lowenstein, D M; Huseth, A S; Groves, R L

2012-06-01

Cucumber (Cucumis sativus L.) is among the plants highly dependent on insect-mediated pollination, but little is known about its unmanaged pollinators. Both domestic and wild bee populations in central Wisconsin pickling cucumber fields were assessed using a combination of pan trapping and floral observations before and during bloom. Together with land cover analyses extending 2,000 m from field centers, the relationship of land cover components and bee abundance and diversity were examined. Over a 2-yr sample interval distributed among 18 experimental sites, 3,185 wild bees were collected representing >60 species. A positive association was found between both noncrop and herbaceous areas with bee abundance and diversity only during bloom. Response of bee abundance and diversity to land cover was strongest at larger buffers presumably because of the heterogeneous nature of the landscape and connectivity between crop and noncrop areas. These results are consistent with previous research that has found a weak response of wild bees to surrounding vegetation in moderately fragmented areas. A diverse community of wild bees is present within the fields of a commercial cucumber system, and there is evidence of floral visitation by unmanaged bees. This evidence emphasizes the importance of wild pollinators in fragmented landscapes and the need for additional research to investigate the effectiveness of individual species in pollen deposition.

Hybrids between cultivated and wild carrots in natural populations in Denmark

DEFF Research Database (Denmark)

Magnussen, L.S.; Hauser, Thure Pavlo

2007-01-01

Many cultivated plant species are able to hybridize with related wild plants. However, it is not clear whether their hybrids are able to survive and reproduce outside managed fields, and if cultivar genes introgress into wild populations. In areas where wild carrots co-occur with carrot root......-crops, pollen and seeds may flow from two different sources in the fields to the surrounding wild populations: from pure cultivar plants that occasionally flower, and from flowering 'bolters' that originate from hybridizations between wild (male) and cultivated carrots (female) in seed production fields...... by AFLP. Four hybrids were identified among the 71 plants analysed, and these were most likely F(2) or backcross individuals, sired by pollen from hybrid bolters. Wild populations close to fields were genetically somewhat more similar to cultivars than wild populations far from fields, suggesting...

Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia.

Science.gov (United States)

Thomas, Evert; Tovar, Eduardo; Villafañe, Carolina; Bocanegra, José Leonardo; Moreno, Rodrigo

2017-12-01

Crop wild relatives (CWRs) of rice hold important traits that can contribute to enhancing the ability of cultivated rice (Oryza sativa and O. glaberrima) to produce higher yields, cope with the effects of climate change, and resist attacks of pests and diseases, among others. However, the genetic resources of these species remain dramatically understudied, putting at risk their future availability from in situ and ex situ sources. Here we assess the distribution of genetic diversity of the four rice CWRs known to occur in Colombia (O. glumaepatula, O. alta, O. grandiglumis, and O. latifolia). Furthermore, we estimated the degree of overlap between areas with suitable habitat for cultivated and wild rice, both under current and predicted future climate conditions to assess the potential spatiotemporal scale of potential gene flow from GM rice to its CWRs. Our findings suggest that part of the observed genetic diversity and structure, at least of the most exhaustively sampled species, may be explained by their glacial and post-glacial range dynamics. Furthermore, in assessing the expected impact of climate change and the potential spatiotemporal scale of gene flow between populations of CWRs and GM rice we find significant overlap between present and future suitable areas for cultivated rice and its four CWRs. Climate change is expected to have relatively limited negative effects on the rice CWRs, with three species showing opportunities to expand their distribution ranges in the future. Given (i) the sparse presence of CWR populations in protected areas (ii) the strong suitability overlap between cultivated rice and its four CWRs; and (iii) the complexity of managing and regulating areas to prevent alien gene flow, the first priority should be to establish representative ex situ collections for all CWR species, which currently do not exist. In the absence of studies under field conditions on the scale and extent of gene flow between cultivated rice and its Colombian

Hybridization rates between lettuce (Lactuca sativa) and its wild relative (L. serriola) under field conditions

OpenAIRE

D'Andrea, Luigi; Felber, François; Guadagnuolo, Roberto

2008-01-01

Hybridization and introgression between crops and wild relatives may have important evolutionary and ecological consequences such as gene swamping or increased invasiveness. In the present study, we investigated hybridization under field conditions between crop lettuce (Lactuca sativa) and its wild relative prickly lettuce (L. serriola), two cross-compatible, predominantly autogamous and insect pollinated species. In 2003 and 2004, we estimated the rates of hybridization between L. sativa and...

Environmental health impacts of feeding crops to farmed fish.

Science.gov (United States)

Fry, Jillian P; Love, David C; MacDonald, Graham K; West, Paul C; Engstrom, Peder M; Nachman, Keeve E; Lawrence, Robert S

2016-05-01

Half of the seafood consumed globally now comes from aquaculture, or farmed seafood. Aquaculture therefore plays an increasingly important role in the global food system, the environment, and human health. Traditionally, aquaculture feed has contained high levels of wild fish, which is unsustainable for ocean ecosystems as demand grows. The aquaculture industry is shifting to crop-based feed ingredients, such as soy, to replace wild fish as a feed source and allow for continued industry growth. This shift fundamentally links seafood production to terrestrial agriculture, and multidisciplinary research is needed to understand the ecological and environmental health implications. We provide basic estimates of the agricultural resource use associated with producing the top five crops used in commercial aquaculture feed. Aquaculture's environmental footprint may now include nutrient and pesticide runoff from industrial crop production, and depending on where and how feed crops are produced, could be indirectly linked to associated negative health outcomes. We summarize key environmental health research on health effects associated with exposure to air, water, and soil contaminated by industrial crop production. Our review also finds that changes in the nutritional content of farmed seafood products due to altered feed composition could impact human nutrition. Based on our literature reviews and estimates of resource use, we present a conceptual framework describing the potential links between increasing use of crop-based ingredients in aquaculture and human health. Additional data and geographic sourcing information for crop-based ingredients are needed to fully assess the environmental health implications of this trend. This is especially critical in the context of a food system that is using both aquatic and terrestrial resources at unsustainable rates. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Comparative value of wild and domestic plants in home gardens of a South African rural village

CSIR Research Space (South Africa)

High, C

2000-03-01

Full Text Available Rural inhabitants make considerable use of wild resources from communal areas around their settlements, as well as from arable and residential plots. These wild resources compete with the main crops planted in arable plots and home gardens, but play...

Linking Land Cover Data and Crop Yields for Mapping and Assessment of Pollination Services in Europe

Directory of Open Access Journals (Sweden)

Maria Luisa Paracchini

2013-09-01

Full Text Available Pollination is a key ecosystem service as many crops but in particular, fruits and vegetables are partially dependent on pollinating insects to produce food for human consumption. Here we assessed how pollination services are delivered at the European scale. We used this assessment to estimate the relative contribution of wild pollinators to crop production. We developed an index of relative pollination potential, which is defined as the relative potential or relative capacity of ecosystems to support crop pollination. The model for relative pollination potential is based on the assumption that different habitats, but in particular forest edges, grasslands rich in flowers and riparian areas, offer suitable sites for wild pollinator insects. Using data of the foraging range of wild bees with short flight distances, we linked relative pollination potential to regional statistics of crop production. At aggregated EU level, the absence of insect pollination would result in a reduction of between 25% and 32% of the total production of crops which are partially dependent on insect pollination, depending on the data source used for the assessment. This production deficit decreases to 2.5% if only the relative pollination potential of a single guild of pollinators is considered. A strength of our approach is the spatially-explicit link between land cover based relative pollination potential and crop yield which enables a general assessment of the benefits that are derived from pollination services in Europe while providing insight where pollination gaps in the landscape occur.

Agriculture sows pests: how crop domestication, host shifts, and agricultural intensification can create insect pests from herbivores.

Science.gov (United States)

Bernal, Julio S; Medina, Raul F

2018-04-01

We argue that agriculture as practiced creates pests. We use three examples (Corn leafhopper, Dalbulus maidis; Western corn rootworm, Diabrotica virgifera virgifera; Cotton fleahopper, Pseudatomoscelis seriatus) to illustrate: firstly, how since its origins, agriculture has proven conducive to transforming selected herbivores into pests, particularly through crop domestication and spread, and agricultural intensification, and; secondly, that the herbivores that became pests were among those hosted by crop wild relatives or associates, and were pre-adapted either as whole species or component subpopulations. Two of our examples, Corn leafhopper and Western corn rootworm, illustrate how following a host shift to a domesticated host, emergent pests 'hopped' onto crops and rode expansion waves to spread far beyond the geographic ranges of their wild hosts. Western corn rootworm exemplifies how an herbivore-tolerant crop was left vulnerable when it was bred for yield and protected with insecticides. Cotton fleahopper illustrates how removing preferred wild host plants from landscapes and replacing them with crops, allows herbivores with flexible host preferences to reach pest-level populations. We conclude by arguing that in the new geological epoch we face, the Anthropocene, we can improve agriculture by looking to our past to identify and avoid missteps of early and recent farmers. Copyright © 2018 Elsevier Inc. All rights reserved.

Enzymatic saccharification of dilute acid pretreated saline crops for fermentable sugar production

Energy Technology Data Exchange (ETDEWEB)

Zheng, Yi; Zhang, Ruihong [Biological and Agricultural Engineering Department, University of California, Davis One Shields Avenue, Davis, CA 95616 (United States); Pan, Zhongli [Biological and Agricultural Engineering Department, University of California, Davis One Shields Avenue, Davis, CA 95616 (United States); Processed Foods Research Unit, USDA-ARS-WRRC, 800 Buchanan Street, Albany, CA 94710 (United States); Wang, Donghai [Biological and Agricultural Engineering Department, Kansas State University, Manhattan, KS 66506 (United States)

2009-11-15

Four saline crops [athel (Tamarix aphylla L), eucalyptus (Eucalyptus camaldulensis), Jose Tall Wheatgrass (Agropyron elongatum), and Creeping Wild Ryegrass (Leymus triticoides)] that are used in farms for salt uptake from soil and drainage irrigation water have the potential for fuel ethanol production because they don't take a large number of arable lands. Dilute sulfuric acid pretreatment and enzymatic hydrolysis were conducted to select the optimum pretreatment conditions and the best saline crop for further enzymatic hydrolysis research. The optimum dilute acid pretreatment conditions included T = 165 C, t = 8 min, and sulfuric acid concentration 1.4% (w/w). Creeping Wild Ryegrass was decided to be the best saline crop. Solid loading, cellulase and {beta}-glucosidase concentrations had significant effects on the enzymatic hydrolysis of dilute acid pretreated Creeping Wild Ryegrass. Glucose concentration increased by 36 mg/mL and enzymatic digestibility decreased by 20% when the solid loading increased from 4 to 12%. With 8% solid loading, enzymatic digestibility increased by over 30% with the increase of cellulase concentration from 5 to 15 FPU/g-cellulose. Under given cellulase concentration of 15 FPU/g-cellulose, 60% increase of enzymatic digestibility of pretreated Creeping Wild Ryegrass was obtained with the increase of {beta}-glucosidase concentration up to 15 CBU/g-cellulose. With a high solid loading of 10%, fed-batch operation generated 12% and 18% higher enzymatic digestibility and glucose concentration, respectively, than batch process. (author)

Eating from the wild: diversity of wild edible plants used by Tibetans in Shangri-la region, Yunnan, China.

Science.gov (United States)

Ju, Yan; Zhuo, Jingxian; Liu, Bo; Long, Chunlin

2013-04-19

Locally harvested wild edible plants (WEPs) provide food as well as cash income for indigenous people and are of great importance in ensuring global food security. Some also play a significant role in maintaining the productivity and stability of traditional agro-ecosystems. Shangri-la region of Yunnan Province, SW China, is regarded as a biodiversity hotspot. People living there have accumulated traditional knowledge about plants. However, with economic development, WEPs are threatened and the associated traditional knowledge is in danger of being lost. Therefore, ethnobotanical surveys were conducted throughout this area to investigate and document the wild edible plants traditionally used by local Tibetan people. Twenty-nine villages were selected to carry out the field investigations. Information was collected using direct observation, semi-structured interviews, individual discussions, key informant interviews, focus group discussions, questionnaires and participatory rural appraisal (PRA). Information about 168 wild edible plant species in 116 genera of 62 families was recorded and specimens were collected. Most species were edible greens (80 species) or fruits (78). These WEPs are sources for local people, especially those living in remote rural areas, to obtain mineral elements and vitamins. More than half of the species (70%) have multiple use(s) besides food value. Some are crop wild relatives that could be used for crop improvement. Several also have potential values for further commercial exploitation. However, the utilization of WEPs and related knowledge are eroding rapidly, especially in the areas with convenient transportation and booming tourism. Wild food plants species are abundant and diverse in Shangri-la region. They provide food and nutrients to local people and could also be a source of cash income. However, both WEPs and their associated indigenous knowledge are facing various threats. Thus, conservation and sustainable utilization of these

Exploiting wild relatives of S. lycopersicum for quality traits

NARCIS (Netherlands)

Víquez Zamora, A.M.

2015-01-01

Exploiting wild relatives of S. lycopersicum for quality traits Ana Marcela Víquez Zamora Tomatoes are consumed worldwide and became a model for crop plant research. A part of the research aims at expanding genetic diversity in tomato; this can be done by incorporating

Landscape configurational heterogeneity by small-scale agriculture, not crop diversity, maintains pollinators and plant reproduction in western Europe.

Science.gov (United States)

Hass, Annika L; Kormann, Urs G; Tscharntke, Teja; Clough, Yann; Baillod, Aliette Bosem; Sirami, Clélia; Fahrig, Lenore; Martin, Jean-Louis; Baudry, Jacques; Bertrand, Colette; Bosch, Jordi; Brotons, Lluís; Burel, Françoise; Georges, Romain; Giralt, David; Marcos-García, María Á; Ricarte, Antonio; Siriwardena, Gavin; Batáry, Péter

2018-02-14

Agricultural intensification is one of the main causes for the current biodiversity crisis. While reversing habitat loss on agricultural land is challenging, increasing the farmland configurational heterogeneity (higher field border density) and farmland compositional heterogeneity (higher crop diversity) has been proposed to counteract some habitat loss. Here, we tested whether increased farmland configurational and compositional heterogeneity promote wild pollinators and plant reproduction in 229 landscapes located in four major western European agricultural regions. High-field border density consistently increased wild bee abundance and seed set of radish ( Raphanus sativus ), probably through enhanced connectivity. In particular, we demonstrate the importance of crop-crop borders for pollinator movement as an additional experiment showed higher transfer of a pollen analogue along crop-crop borders than across fields or along semi-natural crop borders. By contrast, high crop diversity reduced bee abundance, probably due to an increase of crop types with particularly intensive management. This highlights the importance of crop identity when higher crop diversity is promoted. Our results show that small-scale agricultural systems can boost pollinators and plant reproduction. Agri-environmental policies should therefore aim to halt and reverse the current trend of increasing field sizes and to reduce the amount of crop types with particularly intensive management. © 2018 The Author(s).

Genetic diversity in Carthamus tinctorius (Asteraceae; safflower), an underutilized oilseed crop.

Science.gov (United States)

Pearl, Stephanie A; Burke, John M

2014-10-01

• Underutilized crops are potentially valuable resources for meeting increasing food demands. Safflower, an oilseed crop, is an example of one such underutilized crop that thrives in moisture-limited areas. Characterization of the genetic diversity maintained within the gene pools of underutilized crops such as safflower is an important step in their further development.• A total of 190 safflower individuals, including 134 USDA accessions, 48 breeding lines from two private North American safflower breeding companies, and eight wild safflower individuals, were genotyped using 133 single nucleotide polymorphism (SNP) markers. We then used the resulting data to assess the amount and distribution of genetic diversity within and among these collections of safflower.• Although just a modest reduction in gene diversity was observed in the commercial breeding lines (relative to the other safflower groupings), safflower domestication was accompanied by a significant decrease in allelic richness. Further, our results suggest that most safflower breeding lines originated from a single pool of diversity within the Old World safflower germplasm.• Taken together, our results suggest that both the safflower germplasm collection and related, wild species harbor previously undocumented genetic diversity that could help fuel future improvement efforts. Paired with analyses of functional diversity, the molecular resources described herein will be thus be useful in the continued development of safflower as an oilseed crop. © 2014 Botanical Society of America, Inc.

A genetic analysis of the introgression process from cultivated lettuce (Lactuca sativa L.) to wild prickly lettuce (L. serriola L.)

OpenAIRE

Uwimana, B.

2011-01-01

Many plant species can hybridise and produce fertile offspring. Hybridization between cultivated species and their wild relatives has raised concerns with regard to GM crops, as it constitutes a possible route along which the transgene could disperse from crops into related wild species, establish itself in the natural population, and persist under natural conditions. This may cause unintended ecological consequences such as the formation of more invasive weeds and genetic erosion. After cro...

Impacts of neonicotinoid use on long-term population changes in wild bees in England

Science.gov (United States)

Woodcock, Ben A.; Isaac, Nicholas J. B.; Bullock, James M.; Roy, David B.; Garthwaite, David G.; Crowe, Andrew; Pywell, Richard F.

2016-08-01

Wild bee declines have been ascribed in part to neonicotinoid insecticides. While short-term laboratory studies on commercially bred species (principally honeybees and bumblebees) have identified sub-lethal effects, there is no strong evidence linking these insecticides to losses of the majority of wild bee species. We relate 18 years of UK national wild bee distribution data for 62 species to amounts of neonicotinoid use in oilseed rape. Using a multi-species dynamic Bayesian occupancy analysis, we find evidence of increased population extinction rates in response to neonicotinoid seed treatment use on oilseed rape. Species foraging on oilseed rape benefit from the cover of this crop, but were on average three times more negatively affected by exposure to neonicotinoids than non-crop foragers. Our results suggest that sub-lethal effects of neonicotinoids could scale up to cause losses of bee biodiversity. Restrictions on neonicotinoid use may reduce population declines.

Investigation and Analysis of Crop Germplasm Resources in Coastal Areas of Shandong Province

Institute of Scientific and Technical Information of China (English)

Dong WANG; Shoujin FAN; Libin ZHANG; Hui ZHANG; Yingjie LIN; Hanfeng DING; Xiaodong ZHANG; Runfang LI; Zhan LI; Yumin MA; Yu ZHANG; Nana LI; Weijing CHEN; Zhongxue FAN

2017-01-01

This study focused on the investigation of crop germplasm resources in coastal areas of Shandong Province, including 132 villages in 82 towns of 34 counties. The survey collected local varieties and wild resources of grain crops, economic crops, vegetables and fruit trees, and a total of 848 samples were collected, belonging to 54 species of 39 genera in 15 families. In this study, the current situation and growth and decline conditions of crop germplasm resources were investigated, and their botanical classification and utilization importance were analyzed. Furthermore, the conservation, development and utilization of crop germplasm resources in coastal areas of Shandong Province were also discussed in this paper.

The Genetic Structure of Wild Orobanche cumana Wallr. (Orobanchaceae Populations in Eastern Bulgaria Reflects Introgressions from Weedy Populations

Directory of Open Access Journals (Sweden)

Rocío Pineda-Martos

2014-01-01

Full Text Available Orobanche cumana is a holoparasitic plant naturally distributed from central Asia to south-eastern Europe, where it parasitizes wild Asteraceae species. It is also an important parasitic weed of sunflower crops. The objective of this research was to investigate genetic diversity, population structure, and virulence on sunflower of O. cumana populations parasitizing wild plants in eastern Bulgaria. Fresh tissue of eight O. cumana populations and mature seeds of four of them were collected in situ on wild hosts. Genetic diversity and population structure were studied with SSR markers and compared to weedy populations. Two main gene pools were identified in Bulgarian populations, with most of the populations having intermediate characteristics. Cross-inoculation experiments revealed that O. cumana populations collected on wild species possessed similar ability to parasitize sunflower to those collected on sunflower. The results were explained on the basis of an effective genetic exchange between populations parasitizing sunflower crops and those parasitizing wild species. The occurrence of bidirectional gene flow may have an impact on wild populations, as new physiological races continuously emerge in weedy populations. Also, genetic variability of wild populations may favour the ability of weedy populations to overcome sunflower resistance mechanisms.

The Genetic Structure of Wild Orobanche cumana Wallr. (Orobanchaceae) Populations in Eastern Bulgaria Reflects Introgressions from Weedy Populations

Science.gov (United States)

Pineda-Martos, Rocío; Pujadas-Salvà, Antonio J.; Fernández-Martínez, José M.; Stoyanov, Kiril; Pérez-Vich, Begoña

2014-01-01

Orobanche cumana is a holoparasitic plant naturally distributed from central Asia to south-eastern Europe, where it parasitizes wild Asteraceae species. It is also an important parasitic weed of sunflower crops. The objective of this research was to investigate genetic diversity, population structure, and virulence on sunflower of O. cumana populations parasitizing wild plants in eastern Bulgaria. Fresh tissue of eight O. cumana populations and mature seeds of four of them were collected in situ on wild hosts. Genetic diversity and population structure were studied with SSR markers and compared to weedy populations. Two main gene pools were identified in Bulgarian populations, with most of the populations having intermediate characteristics. Cross-inoculation experiments revealed that O. cumana populations collected on wild species possessed similar ability to parasitize sunflower to those collected on sunflower. The results were explained on the basis of an effective genetic exchange between populations parasitizing sunflower crops and those parasitizing wild species. The occurrence of bidirectional gene flow may have an impact on wild populations, as new physiological races continuously emerge in weedy populations. Also, genetic variability of wild populations may favour the ability of weedy populations to overcome sunflower resistance mechanisms. PMID:25143963

Cover Image Identification of Plant Species for Crop Pollinator Habitat Enhancement in the Northern Prairies

Directory of Open Access Journals (Sweden)

Diana Bizecki Robson

2014-09-01

Full Text Available Wild pollinators have a positive impact on the productivity of insect-pollinated crops. Consequently, landowners are being encouraged to maintain and grow wildflower patches to provide habitat for important pollinators. Research on plant-pollinator interaction matrices indicates that a small number of “core” plants provide a disproportionately high amount of pollen and nectar to insects. This matrix data can be used to help design wildflower plantings that provide optimal resources for desirable pollinators. Existing interaction matrices from three tall grass prairie preserves in the northern prairies were used to identify core plant species that are visited by wild pollinators of a common insect-pollinated crop, namely canola (Brassica napus L.. The wildflower preferences of each insect taxon were determined using quantitative insect visitation and floral abundance data. Phenology data were used to calculate the degree of floral synchrony between the wildflowers and canola. Using this information I ranked the 41 wildflowers that share insect visitors with canola according to how useful they are for providing pollinators with forage before and after canola flowers. The top five species were smooth blue aster (Symphyotrichum laeve (L. A. & D. Löve, stiff goldenrod (Solidago rigida L., wild bergamot (Monarda fistulosa L., purple prairie-clover (Dalea purpurea Vent. and Lindley’s aster (Symphyotrichum ciliolatum (Lindl. A. & D. Löve. By identifying the most important wild insects for crop pollination, and determining when there will be “pollen and nectar gaps”, appropriate plant species can be selected for companion plantings to increase pollinator populations and crop production.

Transfer of engineered genes from crop to wild plants

DEFF Research Database (Denmark)

Bagger Jørgensen, Rikke; Hauser, T.P.; Mikkelsen, T.R.

1996-01-01

The escape of engineered genes - genes inserted using recombinant DNA techniques - from cultivated plants to wild or weedy relatives has raised concern about possible risks to the environment or to health. The media have added considerably to public concern by suggesting that such gene escape...... is a new and rather unexpected phenomenon. However, transfer of engineered genes between plants is not at-all surprising, because it is mediated by exactly the same mechanisms as those responsible for transferring endogenous plant genes: it takes place by sexual crosses, with pollen as the carrier...

Prioritising in situ conservation of crop resources: a case study of African cowpea (Vigna unguiculata).

Science.gov (United States)

Moray, C; Game, E T; Maxted, N

2014-06-17

Conserving crop wild relatives (CWR) is critical for maintaining food security. However, CWR-focused conservation plans are lacking, and are often based on the entire genus, even though only a few taxa are useful for crop improvement. We used taxonomic and geographic prioritisation to identify the best locations for in situ conservation of the most important (priority) CWR, using African cowpea (Vigna unguiculata (L.) Walp.) as a case study. Cowpea is an important crop for subsistence farmers in sub-Saharan Africa, yet its CWR are under-collected, under-conserved and under-utilised in breeding. We identified the most efficient sites to focus in situ cowpea CWR conservation and assessed whether priority CWR would be adequately represented in a genus-based conservation plan. We also investigated whether priority cowpea CWR are likely to be found in existing conservation areas and in areas important for mammal conservation. The genus-based method captured most priority CWR, and the distributions of many priority CWR overlapped with established conservation reserves and targets. These results suggest that priority cowpea CWR can be conserved by building on conservation initiatives established for other species.

Close genetic proximity between cultivated and wild Bactris gasipaes Kunth. revealed by microsatellite markers in Western Ecuador.

NARCIS (Netherlands)

Couvreur, T.L.P.; Billotte, N.; Lara, C.; Vigouroux, Y.; Ludena, B.; Pham, J.L.; Pintaud, J.C.

2006-01-01

Bactris gasipaes Kunth (peach palm or Pejibaye) is the only domesticated palm of the Neotropics. The genetic relationships between the crop and its wild relatives are still unclear. We undertook field and laboratory work in order to describe differentiation and relationships between the wild and

Crop succession requirements in agricultural production planning

NARCIS (Netherlands)

Klein Haneveld, W.K.; Stegeman, A.

2005-01-01

A method is proposed to write crop succession requirements as linear constraints in an LP-based model for agricultural production planning. Crop succession information is given in the form of a set of inadmissible successions of crops. The decision variables represent the areas where a certain

GENETICALLY MODIFIED FOOD CROPS AND PUBLIC HEALTH

Directory of Open Access Journals (Sweden)

Alejandro Chaparro Giraldo

2008-09-01

Full Text Available The progress made in plant biotechnology has provided an opportunity to new food crops being developed having desirable traits for improving crop yield, reducing the use of agrochemicals and adding nutritional properties to staple crops. However, genetically modified (GM crops have become a subject of intense debate in which opponents argue that GM crops represent a threat to individual freedom, the environment, public health and traditional economies. Despite the advances in food crop agriculture, the current world situation is still characterised by massive hunger and chronic malnutrition, representing a major public health problem. Biofortified GM crops have been considered an important and complementary strategy for delivering naturally-fortified staple foods to malnourished populations. Expert advice and public concern have led to designing strategies for assessing the potential risks involved in cultivating and consuming GM crops. The present critical review was aimed at expressing some conflicting points of view about the potential risks of GM crops for public health. It was concluded that GM food crops are no more risky than those genetically modified by conventional methods and that these GM crops might contribute towards reducing the amount of malnourished people around the world. However, all this needs to be complemented by effective political action aimed at increasing the income of people living below the poverty-line.

Bacterial endophytes from wild maize suppress Fusarium graminearum in modern maize and inhibit mycotoxin accumulation

Directory of Open Access Journals (Sweden)

Walaa Kamel Mousa

2015-10-01

Full Text Available Wild maize (teosinte has been reported to be less susceptible to pests than their modern maize (corn relatives. Endophytes, defined as microbes that inhabit plants without causing disease, are known for their ability to antagonize plant pests and pathogens. We hypothesized that the wild relatives of modern maize may host endophytes that combat pathogens. Fusarium graminearum is the fungus that causes Gibberella Ear Rot (GER in modern maize and produces the mycotoxin, deoxynivalenol (DON. In this study, 215 bacterial endophytes, previously isolated from diverse maize genotypes including wild teosintes, traditional landraces and modern varieties, were tested for their ability to antagonize F. graminearum in vitro. Candidate endophytes were then tested for their ability to suppress GER in modern maize in independent greenhouse trials. The results revealed that three candidate endophytes derived from wild teosintes were most potent in suppressing F. graminearum in vitro and GER in a modern maize hybrid. These wild teosinte endophytes could suppress a broad spectrum of fungal pathogens of modern crops in vitro. The teosinte endophytes also suppressed DON mycotoxin during storage to below acceptable safety threshold levels. A fourth, less robust anti-fungal strain was isolated from a modern maize hybrid. Three of the anti-fungal endophytes were predicted to be Paenibacillus polymyxa, along with one strain of Citrobacter. Microscopy studies suggested a fungicidal mode of action by all four strains. Molecular and biochemical studies showed that the P. polymyxa strains produced the previously characterized anti-Fusarium compound, fusaricidin. Our results suggest that the wild relatives of modern crops may serve as a valuable reservoir for endophytes in the ongoing fight against serious threats to modern agriculture. We discuss the possible impact of crop evolution and domestication on endophytes in the context of plant defense.

Genetic diversity in Oryza glumaepatula wild rice populations in Costa Rica and possible gene flow from O. sativa.

Science.gov (United States)

Fuchs, Eric J; Meneses Martínez, Allan; Calvo, Amanda; Muñoz, Melania; Arrieta-Espinoza, Griselda

2016-01-01

Wild crop relatives are an important source of genetic diversity for crop improvement. Diversity estimates are generally lacking for many wild crop relatives. The objective of the present study was to analyze how genetic diversity is distributed within and among populations of the wild rice species Oryza glumaepatula in Costa Rica. We also evaluated the likelihood of gene flow between wild and commercial rice species because the latter is commonly sympatric with wild rice populations. Introgression may change wild species by incorporating alleles from domesticated species, increasing the risk of losing original variation. Specimens from all known O. glumaepatula populations in Costa Rica were analyzed with 444 AFLP markers to characterize genetic diversity and structure. We also compared genetic diversity estimates between O. glumaepatula specimens and O. sativa commercial rice. Our results showed that O. glumaepatula populations in Costa Rica have moderately high levels of genetic diversity, comparable to those found in South American populations. Despite the restricted distribution of this species in Costa Rica, populations are fairly large, reducing the effects of drift on genetic diversity. We found a dismissible but significant structure (θ = 0.02 ± 0.001) among populations. A Bayesian structure analysis suggested that some individuals share a significant proportion of their genomes with O. sativa. These results suggest that gene flow from cultivated O. sativa populations may have occurred in the recent past. These results expose an important biohazard: recurrent hybridization may reduce the genetic diversity of this wild rice species. Introgression may transfer commercial traits into O. glumaepatula, which in turn could alter genetic diversity and increase the likelihood of local extinction. These results have important implications for in situ conservation strategies of the only wild populations of O. glumaepatula in Costa Rica.

Evidence of cryptic introgression in tomato (Solanum lycopersicum L.) based on wild tomato species alleles.

Science.gov (United States)

Labate, Joanne A; Robertson, Larry D

2012-08-07

Many highly beneficial traits (e.g. disease or abiotic stress resistance) have been transferred into crops through crosses with their wild relatives. The 13 recognized species of tomato (Solanum section Lycopersicon) are closely related to each other and wild species genes have been extensively used for improvement of the crop, Solanum lycopersicum L. In addition, the lack of geographical barriers has permitted natural hybridization between S. lycopersicum and its closest wild relative Solanum pimpinellifolium in Ecuador, Peru and northern Chile. In order to better understand patterns of S. lycopersicum diversity, we sequenced 47 markers ranging in length from 130 to 1200 bp (total of 24 kb) in genotypes of S. lycopersicum and wild tomato species S. pimpinellifolium, Solanum arcanum, Solanum peruvianum, Solanum pennellii and Solanum habrochaites. Between six and twelve genotypes were comparatively analyzed per marker. Several of the markers had previously been hypothesized as carrying wild species alleles within S. lycopersicum, i.e., cryptic introgressions. Each marker was mapped with high confidence (etomato whole genome shotgun chromosomes (SL2.40) database. Neighbor-joining trees showed high mean bootstrap support (86.8 ± 2.34%) for distinguishing red-fruited from green-fruited taxa for 38 of the markers. Hybridization and parsimony splits networks, genomic map positions of markers relative to documented introgressions, and historical origins of accessions were used to interpret evolutionary patterns at nine markers with putatively introgressed alleles. Of the 47 genetic markers surveyed in this study, four were involved in linkage drag on chromosome 9 during introgression breeding, while alleles at five markers apparently originated from natural hybridization with S. pimpinellifolium and were associated with primitive genotypes of S. lycopersicum. The positive identification of introgressed genes within crop species such as S. lycopersicum will help

Drought Tolerance in Modern and Wild Wheat

Science.gov (United States)

Budak, Hikmet; Kantar, Melda; Yucebilgili Kurtoglu, Kuaybe

2013-01-01

The genus Triticum includes bread (Triticum aestivum) and durum wheat (Triticum durum) and constitutes a major source for human food consumption. Drought is currently the leading threat on world's food supply, limiting crop yield, and is complicated since drought tolerance is a quantitative trait with a complex phenotype affected by the plant's developmental stage. Drought tolerance is crucial to stabilize and increase food production since domestication has limited the genetic diversity of crops including wild wheat, leading to cultivated species, adapted to artificial environments, and lost tolerance to drought stress. Improvement for drought tolerance can be achieved by the introduction of drought-grelated genes and QTLs to modern wheat cultivars. Therefore, identification of candidate molecules or loci involved in drought tolerance is necessary, which is undertaken by “omics” studies and QTL mapping. In this sense, wild counterparts of modern varieties, specifically wild emmer wheat (T. dicoccoides), which are highly tolerant to drought, hold a great potential. Prior to their introgression to modern wheat cultivars, drought related candidate genes are first characterized at the molecular level, and their function is confirmed via transgenic studies. After integration of the tolerance loci, specific environment targeted field trials are performed coupled with extensive analysis of morphological and physiological characteristics of developed cultivars, to assess their performance under drought conditions and their possible contributions to yield in certain regions. This paper focuses on recent advances on drought related gene/QTL identification, studies on drought related molecular pathways, and current efforts on improvement of wheat cultivars for drought tolerance. PMID:23766697

Drought Tolerance in Modern and Wild Wheat

Directory of Open Access Journals (Sweden)

Hikmet Budak

2013-01-01

Full Text Available The genus Triticum includes bread (Triticum aestivum and durum wheat (Triticum durum and constitutes a major source for human food consumption. Drought is currently the leading threat on world's food supply, limiting crop yield, and is complicated since drought tolerance is a quantitative trait with a complex phenotype affected by the plant's developmental stage. Drought tolerance is crucial to stabilize and increase food production since domestication has limited the genetic diversity of crops including wild wheat, leading to cultivated species, adapted to artificial environments, and lost tolerance to drought stress. Improvement for drought tolerance can be achieved by the introduction of drought-grelated genes and QTLs to modern wheat cultivars. Therefore, identification of candidate molecules or loci involved in drought tolerance is necessary, which is undertaken by “omics” studies and QTL mapping. In this sense, wild counterparts of modern varieties, specifically wild emmer wheat (T. dicoccoides, which are highly tolerant to drought, hold a great potential. Prior to their introgression to modern wheat cultivars, drought related candidate genes are first characterized at the molecular level, and their function is confirmed via transgenic studies. After integration of the tolerance loci, specific environment targeted field trials are performed coupled with extensive analysis of morphological and physiological characteristics of developed cultivars, to assess their performance under drought conditions and their possible contributions to yield in certain regions. This paper focuses on recent advances on drought related gene/QTL identification, studies on drought related molecular pathways, and current efforts on improvement of wheat cultivars for drought tolerance.

Evaluation of Wild Lentil Species as Genetic Resources to Improve Drought Tolerance in Cultivated Lentil

Directory of Open Access Journals (Sweden)

Linda Y. Gorim

2017-06-01

Full Text Available Increasingly unpredictable annual rainfall amounts and distribution patterns have far reaching implications for pulse crop biology. Seedling and whole plant survival will be affected given that water is a key factor in plant photosynthesis and also influences the evolving disease spectrum that affects crops. The wild relatives of cultivated lentil are native to drought prone areas, making them good candidates for the evaluation of drought tolerance traits. We evaluated root and shoot traits of genotypes of cultivated lentil and five wild species grown under two water deficit regimes as well as fully watered conditions over a 13 week period indoors. Plants were grown in sectioned polyvinyl chloride (PVC tubes containing field soil from the A, B, and C horizons. We found that root distribution into different soil horizons varied among wild lentil genotypes. Secondly, wild lentil genotypes employed diverse strategies such as delayed flowering, reduced transpiration rates, reduced plant height, and deep root systems to either escape, evade or tolerate drought conditions. In some cases, more than one drought strategy was observed within the same genotype. Sequence based classification of wild and cultivated genotypes did not explain patterns of drought response. The environmental conditions at their centers of origin may explain the patterns of drought strategies observed in wild lentils. The production of numerous small seeds by wild lentil genotypes may have implications for yield improvement in lentil breeding programs.

Prevalence of Trichomonas, Salmonella, and Listeria in Wild Birds from Southeast Texas.

Science.gov (United States)

Brobey, Britni; Kucknoor, Ashwini; Armacost, Jim

2017-09-01

Infectious diseases can be a major threat to wildlife populations, especially in human-modified habitats, but infection rates in populations of wild animals are often poorly studied. Trichomonas, Salmonella, and Listeria are all pathogens known to infect birds, but their infection rates in wild bird populations are not well documented. This study documents infection rates of the three pathogens in wild bird populations inhabiting a suburban to rural gradient in Southeast Texas. Various species of wild birds were sampled at five sites in Southeastern Texas representing rural (Birds were captured in mist nets and samples were taken from the oral cavity, crop, and vent to detect the presence of pathogens. Samples were screened for Trichomonas by examining wet mounts under a light microscope, whereas samples were screened for Salmonella and Listeria by examining colonies grown on agar plates. Pathogens detected during the initial screening were further confirmed by PCR and DNA sequencing. Infection rates for Trichomonas, Salmonella, and Listeria were 9%, 17%, and 5%, respectively. The distributions of infection rates across habitats (i.e., rural, exurban, rural) did not differ significantly from the expected null distributions for any of the three pathogens; however, the data suggested some interesting patterns that should be confirmed with a larger dataset. Infection rates for Trichomonas and Salmonella were highest at the suburban sites, whereas the infection rate for Listeria was highest at the rural site. Feeder birds were more likely to be infected by all three pathogens than non-feeder birds. Small sample sizes prevent definitive conclusions regarding variation in infection rates along the suburban to rural gradient, but the results suggest that pathogens followed the predicted patterns. For many of the bird species sampled, this study presents the first report of infection rates by these three pathogens in wild populations.

Archaeobotanical reconstructions of field habitats and crops: the grange in Pomorzany near Kutno, 18th/19th c.

Directory of Open Access Journals (Sweden)

Koszałka Joanna

2015-03-01

Full Text Available The paper presents the results of research of plant macrofossils from the grain deposit deriving from the 18th/19th centuries. The analysed material included 24760 diaspores representing 73 taxa. The majority were cultivated cereal crop species, and there was also abundance of accompanying segetal weed species. About 95% of the gathered crop material was Secale cereale. Another important crop was Hordeum vulgare and there were also some remains of Avena sativa, Triticum aestivum, Fagopyrum esculentum. Cannabis sativa and Linum usitatissimum were found as well. Weeds competing with these crops were, among others, the following species: Agrostemma githago, Raphanus raphanistrum, Apera spica-venti, Bromus secalinus, Centaurea cyanus, Spergula arvensis, Thlaspi arvense, Viola arvensis/tricolor, Fallopia convolvulus, Polygonum persicaria, Mentha arvensis, Anthemis arvensis, Papaver rhoeas, Rumex acetosella, Scleranthus annuus, Aphanes arvensis, Setaria pumila, Setaria viridis/verticilata. Extremely large presence of wild plant diaspores in the material allowed conducting economic and environmental interpretations. Reconstruction methods applied, used primarily in the case of macroremains from granaries, were fully applicable to the analysed plant residues. Weed species composition in the analysed material showed that they were mostly typical for the main winter crop. Some amount of species typical for other habitats were also found and they probably came from the near-by rye field. The presence of perennial diaspores indicated that the field was probably set aside

DAMAGE BY GAME ANIMALS IN AGRICULTURAL CROPS

Directory of Open Access Journals (Sweden)

Monika Sporek

2014-06-01

Full Text Available In the recent years the damage caused by the game animals to the agricultural crops has increased considerably. An immediate cause of this situation is an expanding population of big game, especially wild boar. This increase is primarily due to the changes in agrocenoses, dominated by large area maize cropping. The crop damage is compensated by hunting associations leasing the specific areas. The aim of this paper was to present the costs of the compensation incurred by the lease-holders of the hunting grounds. A cause - effect relationship between greater game damage and increased harvest of the game animals was demonstrated. The analysis was based on the data provided in the Statistical Yearbooks of the Central Statistical Office for 2000-2013. The study also indicated a problem of a decline in roe deer population, caused by more intense harvest resulting from farmer compensation claims.

Importance of pollinators in changing landscapes for world crops.

Science.gov (United States)

Klein, Alexandra-Maria; Vaissière, Bernard E; Cane, James H; Steffan-Dewenter, Ingolf; Cunningham, Saul A; Kremen, Claire; Tscharntke, Teja

2007-02-07

The extent of our reliance on animal pollination for world crop production for human food has not previously been evaluated and the previous estimates for countries or continents have seldom used primary data. In this review, we expand the previous estimates using novel primary data from 200 countries and found that fruit, vegetable or seed production from 87 of the leading global food crops is dependent upon animal pollination, while 28 crops do not rely upon animal pollination. However, global production volumes give a contrasting perspective, since 60% of global production comes from crops that do not depend on animal pollination, 35% from crops that depend on pollinators, and 5% are unevaluated. Using all crops traded on the world market and setting aside crops that are solely passively self-pollinated, wind-pollinated or parthenocarpic, we then evaluated the level of dependence on animal-mediated pollination for crops that are directly consumed by humans. We found that pollinators are essential for 13 crops, production is highly pollinator dependent for 30, moderately for 27, slightly for 21, unimportant for 7, and is of unknown significance for the remaining 9. We further evaluated whether local and landscape-wide management for natural pollination services could help to sustain crop diversity and production. Case studies for nine crops on four continents revealed that agricultural intensification jeopardizes wild bee communities and their stabilizing effect on pollination services at the landscape scale.

Phylogenetic relationships among domesticated and wild species of Cucurbita (Cucurbitaceae) inferred from a mitochondrial gene: Implications for crop plant evolution and areas of origin

Science.gov (United States)

Sanjur, Oris I.; Piperno, Dolores R.; Andres, Thomas C.; Wessel-Beaver, Linda

2002-01-01

We have investigated the phylogenetic relationships among six wild and six domesticated taxa of Cucurbita using as a marker an intron region from the mitochondrial nad1 gene. Our study represents one of the first successful uses of a mtDNA gene in resolving inter- and intraspecific taxonomic relationships in Angiosperms and yields several important insights into the origins of domesticated Cucurbita. First, our data suggest at least six independent domestication events from distinct wild ancestors. Second, Cucurbita argyrosperma likely was domesticated from a wild Mexican gourd, Cucurbita sororia, probably in the same region of southwest Mexico that gave rise to maize. Third, the wild ancestor of Cucurbita moschata is still unknown, but mtDNA data combined with other sources of information suggest that it will probably be found in lowland northern South America. Fourth, Cucurbita andreana is supported as the wild progenitor of Cucurbita maxima, but humid lowland regions of Bolivia in addition to warmer temperate zones in South America from where C. andreana was originally described should possibly be considered as an area of origin for C. maxima. Fifth, our data support other molecular results that indicate two separate domestications in the Cucurbita pepo complex. The potential zone of domestication for one of the domesticated subspecies, C. pepo subsp. ovifera, includes eastern North America and should be extended to northeastern Mexico. The wild ancestor of the other domesticated subspecies, C. pepo subsp. pepo, is undiscovered but is closely related to C. pepo subsp. fraterna and possibly will be found in southern Mexico. PMID:11782554

Phylogenetic relationships among domesticated and wild species of Cucurbita (Cucurbitaceae) inferred from a mitochondrial gene: Implications for crop plant evolution and areas of origin.

Science.gov (United States)

Sanjur, Oris I; Piperno, Dolores R; Andres, Thomas C; Wessel-Beaver, Linda

2002-01-08

We have investigated the phylogenetic relationships among six wild and six domesticated taxa of Cucurbita using as a marker an intron region from the mitochondrial nad1 gene. Our study represents one of the first successful uses of a mtDNA gene in resolving inter- and intraspecific taxonomic relationships in Angiosperms and yields several important insights into the origins of domesticated Cucurbita. First, our data suggest at least six independent domestication events from distinct wild ancestors. Second, Cucurbita argyrosperma likely was domesticated from a wild Mexican gourd, Cucurbita sororia, probably in the same region of southwest Mexico that gave rise to maize. Third, the wild ancestor of Cucurbita moschata is still unknown, but mtDNA data combined with other sources of information suggest that it will probably be found in lowland northern South America. Fourth, Cucurbita andreana is supported as the wild progenitor of Cucurbita maxima, but humid lowland regions of Bolivia in addition to warmer temperate zones in South America from where C. andreana was originally described should possibly be considered as an area of origin for C. maxima. Fifth, our data support other molecular results that indicate two separate domestications in the Cucurbita pepo complex. The potential zone of domestication for one of the domesticated subspecies, C. pepo subsp. ovifera, includes eastern North America and should be extended to northeastern Mexico. The wild ancestor of the other domesticated subspecies, C. pepo subsp. pepo, is undiscovered but is closely related to C. pepo subsp. fraterna and possibly will be found in southern Mexico.

Wild relatives of domesticated pea in the Mediterranean Region and the Fertile Crescent will respond to global climate change

Science.gov (United States)

There is growing interest in conservation and utilization of crop wild relatives (CWR) in international food security policy and research. We explored macroecological patterns of wild pea in the Mediterranean Basin and the Fertile Crescent in relation to the past, current and future climate suitabil...

Reduced sexual compatibility between cultivated and wild chicory and their F1 hybrids

DEFF Research Database (Denmark)

Hauser, T.P.; Bagger Jørgensen, Rikke; Toneatto, F.

2012-01-01

marked, and when seeds were ripe we determined whether cultivar, wild or hybrid plants had pollinated the seeds, using AFLP markers. Cultivar plants fathered much fewer seeds than expected, both on wild and hybrid plants, suggesting that some degree of incompatibility has evolved between cultivar...... (Cichorium intybus L.) has been bred as a crop at least since Roman times. To test if this has led to a loss in reproductive compatibility with wild chicory, we planted cultivar, wild, and F1 hybrid plants into two field plots, and let them pollinate freely. On 2 days, in the beginning and middle...... of the flowering season, we counted the numbers of flowering capitula and open flowers per capitulum, which in combination with counts of viable pollen per flower were used to estimate the expected proportion of seeds fathered by cultivar, wild, and hybrid plants. Open capitula on wild and hybrid plants were...

The conservation and restoration of wild bees.

Science.gov (United States)

Winfree, Rachael

2010-05-01

Bees pollinate most of the world's wild plant species and provide economically valuable pollination services to crops; yet knowledge of bee conservation biology lags far behind other taxa such as vertebrates and plants. There are few long-term data on bee populations, which makes their conservation status difficult to assess. The best-studied groups are the genus Bombus (the bumble bees), and bees in the EU generally; both of these are clearly declining. However, it is not known to what extent these groups represent the approximately 20,000 species of bees globally. As is the case for insects in general, bees are underrepresented in conservation planning and protection efforts. For example, only two bee species are on the global IUCN Red List, and no bee is listed under the U.S. Endangered Species Act, even though many bee species are known to be in steep decline or possibly extinct. At present, bee restoration occurs mainly in agricultural contexts, funded by government programs such as agri-environment schemes (EU) and the Farm Bill (USA). This is a promising approach given that many bee species can use human-disturbed habitats, and bees provide valuable pollination services to crops. However, agricultural restorations only benefit species that persist in agricultural landscapes, and they are more expensive than preserving natural habitat elsewhere. Furthermore, such restorations benefit bees in only about half of studied cases. More research is greatly needed in many areas of bee conservation, including basic population biology, bee restoration in nonagricultural contexts, and the identification of disturbance-sensitive bee species.

Parasitic infections of wild rabbits and hares

Directory of Open Access Journals (Sweden)

Ilić Tamara

2014-01-01

Full Text Available The paper presents the most important parasitic infections of wild rabbits and hares, which harmful effect in this animal population is manifested as a gradual weakening of the immune system, reduction in fertility, weight loss and constant exhaustion. Order of Lagomorpha (hares or lagomorphs belongs to superorder of higher mammals which includes the family of rabbits (Leporidae which are represented in Europe as well as the family of whistleblowers (Ochotonidae which live only in North America and Northern regions of Asia. The most important representatives of Leporidae family are European hare (Lepus europeus and wild rabbit (Oryctolagus cuniculus. The most important endoparasitosis of hares and wild rabbits are: coccidiosis, encephalitozoonosis (nosemosis, toxoplasmosis, sarcocystosis, giardiasis, cryptosporidiosis, protostrongylosis, trichostrngylodosis, passalurosis, anoplocephalidosis, cysticercosis and fasciolosis. The most frequent ectoparasites of rabbits and wild hares are fleas, lice and ticks. Reduction in hare population, which is noticed in whole Europe including Serbia, is caused by changed living conditions, quantitatively and qualitatively insufficient nutrition, increased use of herbicides as well as various infectious diseases and the diseases of parasitic etiology. Since wild rabbits and hares pose a threat to health of domestic rabbits and people, knowledge of parasitic fauna of these wild animals is of extreme epizootiological and epidemiological importance.

Ethics and Transgenic Crops: a Review

OpenAIRE

Robinson, Jonathan

1999-01-01

This article represents a review of some of the ethical dilemmas that have arisen as a result of the development and deployment of transgenic crop plants. The potential for transgenic crops to alleviate human hunger and the possible effects on human health are discussed. Risks and benefits to the environment resulting from genetic engineering of crops for resistance to biotic and abiotic stresses are considered, in addition to effects on biodiversity. The socio-economic impacts and distributi...

Impact of GM crops on biodiversity.

Science.gov (United States)

Carpenter, Janet E

2011-01-01

The potential impact of GM crops on biodiversity has been a topic of interest both in general as well as specifically in the context of the Convention on Biological Diversity. Agricultural biodiversity has been defined at levels from genes to ecosystems that are involved or impacted by agricultural production (www.cbd.int/agro/whatis.shtml). After fifteen years of commercial cultivation, a substantial body of literature now exists addressing the potential impacts of GM crops on the environment. This review takes a biodiversity lens to this literature, considering the impacts at three levels: the crop, farm and landscape scales. Within that framework, this review covers potential impacts of the introduction of genetically engineered crops on: crop diversity, biodiversity of wild relatives, non-target soil organisms, weeds, land use, non-target above-ground organisms, and area-wide pest suppression. The emphasis of the review is peer-reviewed literature that presents direct measures of impacts on biodiversity. In addition, possible impacts of changes in management practises such as tillage and pesticide use are also discussed to complement the literature on direct measures. The focus of the review is on technologies that have been commercialized somewhere in the world, while results may emanate from non-adopting countries and regions. Overall, the review finds that currently commercialized GM crops have reduced the impacts of agriculture on biodiversity, through enhanced adoption of conservation tillage practices, reduction of insecticide use and use of more environmentally benign herbicides and increasing yields to alleviate pressure to convert additional land into agricultural use.

Assessing landowners' attitudes toward wild hogs and support for control options.

Science.gov (United States)

Caplenor, Carlotta A; Poudyal, Neelam C; Muller, Lisa I; Yoest, Chuck

2017-10-01

Wild hogs (Sus scrofa) are an invasive species with destructive habits, particularly rooting and wallowing, which can directly impact agricultural crops, pasture land, and water quality. Considering wild hogs are widely dispersed across the landscape, they are extremely difficult to control. Disagreements can arise among different stakeholders over whether and how their populations should be managed. The purpose of this article was to examine Tennessee, United States landowners' attitudes toward wild hogs, to compare acceptability of control methods, and to evaluate factors significantly influencing public support for regulations to control wild hogs. Logistic regression was employed to analyze data collected from a statewide survey of rural landowners in the fall of 2015. Landowners had overwhelmingly negative attitudes towards wild hogs, and were concerned about their impact on the natural environment and rural economy. Although landowners showed support for controlling wild hogs, levels of acceptability for management options varied. Respondents favored active management and supported education and incentive-based control programs to control wild hogs. Cognitive concepts such as social and personal norms and awareness of consequences, as well as demographic characteristics, significantly predicted landowners' support for state regulations to control wild hogs in Tennessee. Findings increase our understanding of the human dimensions of wild hog management and that of other similarly invasive animals, and may guide resource managers in designing effective and socially acceptable management strategies to control wild hog populations in Tennessee and elsewhere. Copyright © 2017 Elsevier Ltd. All rights reserved.

Identification of Juglans wild relatives resistant to crown gall caused by Agrobacterium tumefaciens

Science.gov (United States)

Wild species are a source of useful agronomic traits for crop plants including but not limited to pathogen resistance, drought tolerance, and salt tolerance (Aradhya and Kluepfel 2012). To exploit this natural diversity of disease resistance, we are conducting the first systematic exploration of th...

Wild pollinators enhance oilseed rape yield in small-holder farming systems in China

NARCIS (Netherlands)

Zou, Yi; Xiao, Haijun; Bianchi, Felix J.J.A.; Jauker, Frank; Luo, Shudong; Werf, van der Wopke

2017-01-01

Background: Insect pollinators play an important role in crop pollination, but the relative contribution of wild pollinators and honey bees to pollination is currently under debate. There is virtually no information available on the strength of pollination services and the identity of pollination

Lost crops of the Incas: Origins of domestication of the Andean pulse crop tarwi, Lupinus mutabilis.

Science.gov (United States)

Atchison, Guy W; Nevado, Bruno; Eastwood, Ruth J; Contreras-Ortiz, Natalia; Reynel, Carlos; Madriñán, Santiago; Filatov, Dmitry A; Hughes, Colin E

2016-09-01

The Andean highlands are a hotspot of domestication, yet our understanding of the origins of early Andean agriculture remains fragmentary. Key questions of where, when, how many times, and from what progenitors many Andean crops were domesticated remain unanswered. The Andean lupine crop tarwi (Lupinus mutabilis) is a regionally important pulse crop with exceptionally high seed protein and oil content and is the focus of modern breeding efforts, but its origins remain obscure. A large genome-wide DNA polymorphism data set was generated using nextRADseq to infer relationships among more than 200 accessions of Andean Lupinus species, including 24 accessions of L. mutabilis and close relatives. Phylogenetic and demographic analyses were used to identify the likely progenitor of tarwi and elucidate the area and timing of domestication in combination with archaeological evidence. We infer that tarwi was domesticated once in northern Peru, most likely in the Cajamarca region within, or adjacent to the extant distribution of L. piurensis, which is the most likely wild progenitor. Demographic analyses suggest that tarwi split from L. piurensis around 2600 BP and suffered a classical domestication bottleneck. The earliest unequivocal archaeological evidence of domesticated tarwi seeds is from the Mantaro Valley, central Peru ca. 1800 BP. A single origin of tarwi from L. piurensis in northern Peru provides a robust working hypothesis for the domestication of this regionally important crop and is one of the first clear-cut examples of a crop originating in the highlands of northern Peru. © 2016 Botanical Society of America.

The Use of Cover Crops as Climate-Smart Management in Midwest Cropping Systems

Science.gov (United States)

Basche, A.; Miguez, F.; Archontoulis, S.; Kaspar, T.

2014-12-01

The observed trends in the Midwestern United States of increasing rainfall variability will likely continue into the future. Events such as individual days of heavy rain as well as seasons of floods and droughts have large impacts on agricultural productivity and the natural resource base that underpins it. Such events lead to increased soil erosion, decreased water quality and reduced corn and soybean yields. Winter cover crops offer the potential to buffer many of these impacts because they essentially double the time for a living plant to protect and improve the soil. However, at present, cover crops are infrequently utilized in the Midwest (representing 1-2% of row cropped land cover) in particular due to producer concerns over higher costs and management, limited time and winter growing conditions as well as the potential harm to corn yields. In order to expand their use, there is a need to quantify how cover crops impact Midwest cropping systems in the long term and namely to understand how to optimize the benefits of cover crops while minimizing their impacts on cash crops. We are working with APSIM, a cropping systems platform, to specifically quantify the long term future impacts of cover crop incorporation in corn-based cropping systems. In general, our regional analysis showed only minor changes to corn and soybean yields (<1% differences) when a cover crop was or was not included in the simulation. Further, a "bad spring" scenario (where every third year had an abnormally wet/cold spring and cover crop termination and planting cash crop were within one day) did not result in any major changes to cash crop yields. Through simulations we estimate an average increase of 4-9% organic matter improvement in the topsoil and an average decrease in soil erosion of 14-32% depending on cover crop planting date and growth. Our work is part of the Climate and Corn-based Cropping Systems Coordinated Agriculture Project (CSCAP), a collaboration of eleven Midwestern

Complementary habitat use by wild bees in agro-natural landscapes.

Science.gov (United States)

Mandelik, Yael; Winfree, Rachael; Neeson, Thomas; Kremen, Claire

2012-07-01

Human activity causes abrupt changes in resource availability across the landscape. In order to persist in human-altered landscapes organisms need to shift their habitat use accordingly. Little is known about the mechanisms by which whole communities persist in human-altered landscapes, including the role of complementary habitat use. We define complementary habitat use as the use of different habitats at different times by the same group of species during the course of their activity period. We hypothesize that complementary habitat use is a mechanism through which native bee species persist in human-altered landscapes. To test this idea, we studied wild bee communities in agro-natural landscapes and explored their community-level patterns of habitat and resource use over space and time. The study was conducted in six agro-natural landscapes in the eastern United States, each containing three main bee habitat types (natural habitat, agricultural fields, and old fields). Each of the three habitats exhibited a unique seasonal pattern in amount, diversity, and composition of floral resources, and together they created phenological complementarity in foraging resources for bees. Individual bee species as well as the bee community responded to these spatiotemporal patterns in floral availability and exhibited a parallel pattern of complementary habitat use. The majority of wild bee species, including all the main crop visitors, used fallow areas within crops early in the season, shifted to crops in mid-season, and used old-field habitats later in the season. The natural-forest habitat supported very limited number of bees, mostly visitors of non-crop plants. Old fields are thus an important feature in these arable landscapes for maintaining crop pollination services. Our study provides a detailed examination of how shifts in habitat and resource use may enable bees to persist in highly dynamic agro-natural landscapes, and points to the need for a broad cross

Foxtail millet: a model crop for genetic and genomic studies in bioenergy grasses.

Science.gov (United States)

Lata, Charu; Gupta, Sarika; Prasad, Manoj

2013-09-01

Foxtail millet is one of the oldest domesticated diploid C4 Panicoid crops having a comparatively small genome size of approximately 515 Mb, short life cycle, and inbreeding nature. Its two species, Setaria italica (domesticated) and Setaria viridis (wild progenitor), have characteristics that classify them as excellent model systems to examine several aspects of architectural, evolutionary, and physiological importance in Panicoid grasses especially the biofuel crops such as switchgrass and napiergrass. Foxtail millet is a staple crop used extensively for food and fodder in parts of Asia and Africa. In its long history of cultivation, it has been adapted to arid and semi-arid areas of Asia, North Africa, South and North America. Foxtail millet has one of the largest collections of cultivated as well as wild-type germplasm rich with phenotypic variations and hence provides prospects for association mapping and allele-mining of elite and novel variants to be incorporated in crop improvement programs. Most of the foxtail millet accessions can be primarily abiotic stress tolerant particularly to drought and salinity, and therefore exploiting these agronomic traits can enhance its efficacy in marker-aided breeding as well as in genetic engineering for abiotic stress tolerance. In addition, the release of draft genome sequence of foxtail millet would be useful to the researchers worldwide in not only discerning the molecular basis of biomass production in biofuel crops and the methods to improve it, but also for the introgression of beneficial agronomically important characteristics in foxtail millet as well as in related Panicoid bioenergy grasses.

Flower volatiles, crop varieties and bee responses.

Directory of Open Access Journals (Sweden)

Björn K Klatt

Full Text Available Pollination contributes to an estimated one third of global food production, through both the improvement of the yield and the quality of crops. Volatile compounds emitted by crop flowers mediate plant-pollinator interactions, but differences between crop varieties are still little explored. We investigated whether the visitation of crop flowers is determined by variety-specific flower volatiles using strawberry varieties (Fragaria x ananassa Duchesne and how this affects the pollination services of the wild bee Osmia bicornis L. Flower volatile compounds of three strawberry varieties were measured via headspace collection. Gas chromatography showed that the three strawberry varieties produced the same volatile compounds but with quantitative differences of the total amount of volatiles and between distinct compounds. Electroantennographic recordings showed that inexperienced females of Osmia bicornis had higher antennal responses to all volatile compounds than to controls of air and paraffin oil, however responses differed between compounds. The variety Sonata was found to emit a total higher level of volatiles and also higher levels of most of the compounds that evoked antennal responses compared with the other varieties Honeoye and Darselect. Sonata also received more flower visits from Osmia bicornis females under field conditions, compared with Honeoye. Our results suggest that differences in the emission of flower volatile compounds among strawberry varieties mediate their attractiveness to females of Osmia bicornis. Since quality and quantity of marketable fruits depend on optimal pollination, a better understanding of the role of flower volatiles in crop production is required and should be considered more closely in crop-variety breeding.

Assessing Wild Bee Biodiversity in Cranberry Agroenvironments: Influence of Natural Habitats.

Science.gov (United States)

Gervais, Amélie; Fournier, Valérie; Sheffield, Cory S; Chagnon, Madeleine

2017-08-01

The conservation of bee populations for pollination in agricultural landscapes has attracted a lot of recent research interest, especially for crop industries undergoing expansion to meet increased production demands. In Canada, much growth has been occurring with commercial cranberry production, a field crop which is largely dependent on bee pollination. Wild bee pollinators could be negatively impacted by losses of natural habitat surrounding cranberry fields to accommodate increased production, but growers have little insight on how to manage their lands to maximize the presence of wild bees. Here, we described a 2-yr study where bee diversity and species composition were investigated to better understand the dynamic between natural habitat and cranberry fields. Bees were sampled using pan-traps and hand netting both within cranberry fields and in one of the three adjacent natural habitat types once a week during the crop flowering period. We found that bee community composition among cranberry fields did not differ based on the respective adjacent habitat type, but fields bordered by meadows were marginally less diverse than fields bordered by forest. As one would expect, field and natural habitat communities differed in terms of species composition and species richness. There was no evidence that one type of natural habitat was more favorable for the bees than another. Future agrobiodiversity studies should simultaneously examine bee diversity comprised in both crop fields and adjacent natural environments to better understand the species dynamics essential to the preservation of pollination services. © The Authors 2017. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Do managed bees have negative effects on wild bees?: A systematic review of the literature.

Directory of Open Access Journals (Sweden)

Rachel E Mallinger

Full Text Available Managed bees are critical for crop pollination worldwide. As the demand for pollinator-dependent crops increases, so does the use of managed bees. Concern has arisen that managed bees may have unintended negative impacts on native wild bees, which are important pollinators in both agricultural and natural ecosystems. The goal of this study was to synthesize the literature documenting the effects of managed honey bees and bumble bees on wild bees in three areas: (1 competition for floral and nesting resources, (2 indirect effects via changes in plant communities, including the spread of exotic plants and decline of native plants, and (3 transmission of pathogens. The majority of reviewed studies reported negative effects of managed bees, but trends differed across topical areas. Of studies examining competition, results were highly variable with 53% reporting negative effects on wild bees, while 28% reported no effects and 19% reported mixed effects (varying with the bee species or variables examined. Equal numbers of studies examining plant communities reported positive (36% and negative (36% effects, with the remainder reporting no or mixed effects. Finally, the majority of studies on pathogen transmission (70% reported potential negative effects of managed bees on wild bees. However, most studies across all topical areas documented the potential for impact (e.g. reporting the occurrence of competition or pathogens, but did not measure direct effects on wild bee fitness, abundance, or diversity. Furthermore, we found that results varied depending on whether managed bees were in their native or non-native range; managed bees within their native range had lesser competitive effects, but potentially greater effects on wild bees via pathogen transmission. We conclude that while this field has expanded considerably in recent decades, additional research measuring direct, long-term, and population-level effects of managed bees is needed to understand

Do managed bees have negative effects on wild bees?: A systematic review of the literature.

Science.gov (United States)

Mallinger, Rachel E; Gaines-Day, Hannah R; Gratton, Claudio

2017-01-01

Managed bees are critical for crop pollination worldwide. As the demand for pollinator-dependent crops increases, so does the use of managed bees. Concern has arisen that managed bees may have unintended negative impacts on native wild bees, which are important pollinators in both agricultural and natural ecosystems. The goal of this study was to synthesize the literature documenting the effects of managed honey bees and bumble bees on wild bees in three areas: (1) competition for floral and nesting resources, (2) indirect effects via changes in plant communities, including the spread of exotic plants and decline of native plants, and (3) transmission of pathogens. The majority of reviewed studies reported negative effects of managed bees, but trends differed across topical areas. Of studies examining competition, results were highly variable with 53% reporting negative effects on wild bees, while 28% reported no effects and 19% reported mixed effects (varying with the bee species or variables examined). Equal numbers of studies examining plant communities reported positive (36%) and negative (36%) effects, with the remainder reporting no or mixed effects. Finally, the majority of studies on pathogen transmission (70%) reported potential negative effects of managed bees on wild bees. However, most studies across all topical areas documented the potential for impact (e.g. reporting the occurrence of competition or pathogens), but did not measure direct effects on wild bee fitness, abundance, or diversity. Furthermore, we found that results varied depending on whether managed bees were in their native or non-native range; managed bees within their native range had lesser competitive effects, but potentially greater effects on wild bees via pathogen transmission. We conclude that while this field has expanded considerably in recent decades, additional research measuring direct, long-term, and population-level effects of managed bees is needed to understand their

Wild Carrot Differentiation in Europe and Selection at DcAOX1 Gene?

Directory of Open Access Journals (Sweden)

Tânia Nobre

Full Text Available By definition, the domestication process leads to an overall reduction of crop genetic diversity. This lead to the current search of genomic regions in wild crop relatives (CWR, an important task for modern carrot breeding. Nowadays massive sequencing possibilities can allow for discovery of novel genetic resources in wild populations, but this quest could be aided by the use of a surrogate gene (to first identify and prioritize novel wild populations for increased sequencing effort. Alternative oxidase (AOX gene family seems to be linked to all kinds of abiotic and biotic stress reactions in various organisms and thus have the potential to be used in the identification of CWR hotspots of environment-adapted diversity. High variability of DcAOX1 was found in populations of wild carrot sampled across a West-European environmental gradient. Even though no direct relation was found with the analyzed climatic conditions or with physical distance, population differentiation exists and results mainly from the polymorphisms associated with DcAOX1 exon 1 and intron 1. The relatively high number of amino acid changes and the identification of several unusually variable positions (through a likelihood ratio test, suggests that DcAOX1 gene might be under positive selection. However, if positive selection is considered, it only acts on some specific populations (i.e. is in the form of adaptive differences in different population locations given the observed high genetic diversity. We were able to identify two populations with higher levels of differentiation which are promising as hot spots of specific functional diversity.

Impact of Distance from the Forest Edge on The Wild Bee Diversity on the Northern Slope of Mount Slamet

Directory of Open Access Journals (Sweden)

Imam Widhiono

2016-09-01

Full Text Available In agricultural landscape in northern slope of Mount Slamet, diversity of wild bee species as pollinator depend on forested habitats. This study aimed to assess the effects of distance from the forest edge on the diversity of wild bees on strawberry and tomato crops. This study was conducted from July 2014 to October 2014. The experimental fields contained tomato and strawberry with a total area of 4 ha (2 ha each and divided into five plots based on distance from the forest edge (0, 50, 100, 150, and 200 m. Wild bee was catched with  kite netting  in 7.00 -9.00 in ten consecutive days. Wild bee diversity differed according to distance from the forest edge, the highest value was at 0 m for strawberry plots (H’ = 2.008, E = 0.72 and Chao1= 16 and for tomato plots, the highest diversity was at 50 m from the forest edge (H’ = 2.298, E = 0.95 and Chao1= 11 and the lowest was at 200 m in both plots. Wild bee species richness and abundance decreased with distance, resulting in the minimum diversity and abundance of wild bee at 200 m from forest edge in both crops. How to CiteWidhiono, I., & Sudiana, E. (2016. Impact of Distance from the Forest Edge on The Wild Bee Diversity on the Northern Slope of Mount Slamet. Biosaintifika: Journal of Biology & Biology Education, 8(2, 148-154.

Differential iridoid production as revealed by a diversity panel of 84 cultivated and wild blueberry species.

Directory of Open Access Journals (Sweden)

Courtney P Leisner

Full Text Available Cultivated blueberry (Vaccinium corymbosum, Vaccinium angustifolium, Vaccinium darrowii, and Vaccinium virgatum is an economically important fruit crop native to North America and a member of the Ericaceae family. Several species in the Ericaceae family including cranberry, lignonberry, bilberry, and neotropical blueberry species have been shown to produce iridoids, a class of pharmacologically important compounds present in over 15 plant families demonstrated to have a wide range of biological activities in humans including anti-cancer, anti-bacterial, and anti-inflammatory. While the antioxidant capacity of cultivated blueberry has been well studied, surveys of iridoid production in blueberry have been restricted to fruit of a very limited number of accessions of V. corymbosum, V. angustifolium and V. virgatum; none of these analyses have detected iridoids. To provide a broader survey of iridoid biosynthesis in cultivated blueberry, we constructed a panel of 84 accessions representing a wide range of cultivated market classes, as well as wild blueberry species, and surveyed these for the presence of iridoids. We identified the iridoid glycoside monotropein in fruits and leaves of all 13 wild Vaccinium species, yet only five of the 71 cultivars. Monotropein positive cultivars all had recent introgressions from wild species, suggesting that iridoid production can be targeted through breeding efforts that incorporate wild germplasm. A series of diverse developmental tissues was also surveyed in the diversity panel, demonstrating a wide range in iridoid content across tissues. Taken together, this data provides the foundation to dissect the molecular and genetic basis of iridoid production in blueberry.

Differential iridoid production as revealed by a diversity panel of 84 cultivated and wild blueberry species.

Science.gov (United States)

Leisner, Courtney P; Kamileen, Mohamed O; Conway, Megan E; O'Connor, Sarah E; Buell, C Robin

2017-01-01

Cultivated blueberry (Vaccinium corymbosum, Vaccinium angustifolium, Vaccinium darrowii, and Vaccinium virgatum) is an economically important fruit crop native to North America and a member of the Ericaceae family. Several species in the Ericaceae family including cranberry, lignonberry, bilberry, and neotropical blueberry species have been shown to produce iridoids, a class of pharmacologically important compounds present in over 15 plant families demonstrated to have a wide range of biological activities in humans including anti-cancer, anti-bacterial, and anti-inflammatory. While the antioxidant capacity of cultivated blueberry has been well studied, surveys of iridoid production in blueberry have been restricted to fruit of a very limited number of accessions of V. corymbosum, V. angustifolium and V. virgatum; none of these analyses have detected iridoids. To provide a broader survey of iridoid biosynthesis in cultivated blueberry, we constructed a panel of 84 accessions representing a wide range of cultivated market classes, as well as wild blueberry species, and surveyed these for the presence of iridoids. We identified the iridoid glycoside monotropein in fruits and leaves of all 13 wild Vaccinium species, yet only five of the 71 cultivars. Monotropein positive cultivars all had recent introgressions from wild species, suggesting that iridoid production can be targeted through breeding efforts that incorporate wild germplasm. A series of diverse developmental tissues was also surveyed in the diversity panel, demonstrating a wide range in iridoid content across tissues. Taken together, this data provides the foundation to dissect the molecular and genetic basis of iridoid production in blueberry.

Impact of honeybee (Apis mellifera L. density on wild bee foraging behaviour

Directory of Open Access Journals (Sweden)

Goras Georgios

2016-06-01

Full Text Available Honey bees are globally regarded as important crop pollinators and are also valued for their honey production. They have been introduced on an almost worldwide scale. During recent years, however, several studies argue their possible competition with unmanaged pollinators. Here we examine the possible effects of honey bees on the foraging behaviour of wild bees on Cistus creticus flowers in Northern Greece. We gradually introduced one, five, and eight honey-bee hives per site, each containing ca. 20,000 workers. The visitation frequency and visit duration of wild bees before and after the beehive introductions were measured by flower observation. While the visitation frequencies of wild bees were unaffected, the average time wild bees spent on C. creticus increased with the introduction of the honey-bee hives. Although competition between honey bees and wild bees is often expected, we did not find any clear evidence for significant effects even in honey-bee densities much higher than the European-wide average of 3.1 colonies/km2.

Crop-associated virus reduces the rooting depth of non-crop perennial native grass more than non-crop-associated virus with known viral suppressor of RNA silencing (VSR).

Science.gov (United States)

Malmstrom, Carolyn M; Bigelow, Patrick; Trębicki, Piotr; Busch, Anna K; Friel, Colleen; Cole, Ellen; Abdel-Azim, Heba; Phillippo, Colin; Alexander, Helen M

2017-09-15

As agricultural acreage expanded and came to dominate landscapes across the world, viruses gained opportunities to move between crop and wild native plants. In the Midwestern USA, virus exchange currently occurs between widespread annual Poaceae crops and remnant native perennial prairie grasses now under consideration as bioenergy feedstocks. In this region, the common aphid species Rhopalosiphum padi L. (the bird cherry-oat aphid) transmits several virus species in the family Luteoviridae, including Barley yellow dwarf virus (BYDV-PAV, genus Luteovirus) and Cereal yellow dwarf virus (CYDV-RPV and -RPS, genus Polerovirus). The yellow dwarf virus (YDV) species in these two genera share genetic similarities in their 3'-ends, but diverge in the 5'-regions. Most notably, CYDVs encode a P0 viral suppressor of RNA silencing (VSR) absent in BYDV-PAV. Because BYDV-PAV has been reported more frequently in annual cereals and CYDVs in perennial non-crop grasses, we examine the hypothesis that the viruses' genetic differences reflect different affinities for crop and non-crop hosts. Specifically, we ask (i) whether CYDVs might persist within and affect a native non-crop grass more strongly than BYDV-PAV, on the grounds that the polerovirus VSR could better moderate the defenses of a well-defended perennial, and (ii) whether the opposite pattern of effects might occur in a less defended annual crop. Because previous work found that the VSR of CYDV-RPS possessed greater silencing suppressor efficiency than that of CYDV-RPV, we further explored (iii) whether a novel grass-associated CYDV-RPS isolate would influence a native non-crop grass more strongly than a comparable CYDV-RPV isolate. In growth chamber studies, we found support for this hypothesis: only grass-associated CYDV-RPS stunted the shoots and crowns of Panicum virgatum L. (switchgrass), a perennial native North American prairie grass, whereas crop-associated BYDV-PAV (and coinfection with BYDV-PAV and CYDV-RPS) most

Gene flow and genetic diversity in cultivated and wild cacao (Theobroma cacao) in Bolivia.

Science.gov (United States)

Chumacero de Schawe, Claudia; Durka, Walter; Tscharntke, Teja; Hensen, Isabell; Kessler, Michael

2013-11-01

The role of pollen flow within and between cultivated and wild tropical crop species is little known. To study the pollen flow of cacao, we estimated the degree of self-pollination and pollen dispersal distances as well as gene flow between wild and cultivated cacao (Theobroma cacao L.). We studied pollen flow and genetic diversity of cultivated and wild cacao populations by genotyping 143 wild and 86 cultivated mature plants and 374 seedlings raised from 19 wild and 25 cultivated trees at nine microsatellite loci. A principal component analysis distinguished wild and cultivated cacao trees, supporting the notion that Bolivia harbors truly wild cacao populations. Cultivated cacao had a higher level of genetic diversity than wild cacao, presumably reflecting the varied origin of cultivated plants. Both cacao types had high outcrossing rates, but the paternity analysis revealed 7-14% self-pollination in wild and cultivated cacao. Despite the tiny size of the pollinators, pollen was transported distances up to 3 km; wild cacao showed longer distances (mean = 922 m) than cultivated cacao (826 m). Our data revealed that 16-20% of pollination events occurred between cultivated and wild populations. We found evidence of self-pollination in both wild and cultivated cacao. Pollination distances are larger than those typically reported in tropical understory tree species. The relatively high pollen exchange from cultivated to wild cacao compromises genetic identity of wild populations, calling for the protection of extensive natural forest tracts to protect wild cacao in Bolivia.

Allelopathic activity of pakistan wheat genotypes against wild oat (Avena fatua L.)

International Nuclear Information System (INIS)

Mahmood, K.; Khaliq, A.; Cheema, Z.A.; Arshad, M.

2013-01-01

Wheat allelopathy can be manipulated for sustainable weed management in wheat based cropping systems. Bioassays were conducted to quantify the allelopathic potential of 35 indigenous wheat genotypes against germination and seedling growth of wild oat (Avena fatua L.). Foliar application of aqueous extracts of wheat straw, surface mulching and incorporation of wheat straw of different genotypes were employed for bioassays study. Results revealed the suppressive allelopathic activity of different wheat genotypes manifested in the form of impaired germination and retarded seedling growth of wild oat. A highly significant genotypic variation in allelopathic potential was observed for different traits. Germination of wild oat was decreased by 10-84% over control by different wheat genotypes. Likewise, over 70% reductions in seedling root and shoot dry weight of wild oat was also observed in V6007. Wheat genotypes viz. V6007, AS 2000, V6111, V6034, V4611, V7189, Uqa b 2000, Chanab 2000, Bhakkar 2002, Pak 81 and Rohtas 90 showed strongly inhibitory allelopathic activity against seedling growth of wild oat. V6007 exhibited highest suppression of wild oat. These studies confirm the suppressive allelopathic potential of indigenous wheat genotypes against wild oat that needs further to be explored under natural conditions. (author)

Bee species diversity enhances productivity and stability in a perennial crop.

Directory of Open Access Journals (Sweden)

Shelley R Rogers

Full Text Available Wild bees provide important pollination services to agroecoystems, but the mechanisms which underlie their contribution to ecosystem functioning--and, therefore, their importance in maintaining and enhancing these services-remain unclear. We evaluated several mechanisms through which wild bees contribute to crop productivity, the stability of pollinator visitation, and the efficiency of individual pollinators in a highly bee-pollination dependent plant, highbush blueberry. We surveyed the bee community (through transect sampling and pan trapping and measured pollination of both open- and singly-visited flowers. We found that the abundance of managed honey bees, Apis mellifera, and wild-bee richness were equally important in describing resulting open pollination. Wild-bee richness was a better predictor of pollination than wild-bee abundance. We also found evidence suggesting pollinator visitation (and subsequent pollination are stabilized through the differential response of bee taxa to weather (i.e., response diversity. Variation in the individual visit efficiency of A. mellifera and the southeastern blueberry bee, Habropoda laboriosa, a wild specialist, was not associated with changes in the pollinator community. Our findings add to a growing literature that diverse pollinator communities provide more stable and productive ecosystem services.

Bee species diversity enhances productivity and stability in a perennial crop.

Science.gov (United States)

Rogers, Shelley R; Tarpy, David R; Burrack, Hannah J

2014-01-01

Wild bees provide important pollination services to agroecoystems, but the mechanisms which underlie their contribution to ecosystem functioning--and, therefore, their importance in maintaining and enhancing these services-remain unclear. We evaluated several mechanisms through which wild bees contribute to crop productivity, the stability of pollinator visitation, and the efficiency of individual pollinators in a highly bee-pollination dependent plant, highbush blueberry. We surveyed the bee community (through transect sampling and pan trapping) and measured pollination of both open- and singly-visited flowers. We found that the abundance of managed honey bees, Apis mellifera, and wild-bee richness were equally important in describing resulting open pollination. Wild-bee richness was a better predictor of pollination than wild-bee abundance. We also found evidence suggesting pollinator visitation (and subsequent pollination) are stabilized through the differential response of bee taxa to weather (i.e., response diversity). Variation in the individual visit efficiency of A. mellifera and the southeastern blueberry bee, Habropoda laboriosa, a wild specialist, was not associated with changes in the pollinator community. Our findings add to a growing literature that diverse pollinator communities provide more stable and productive ecosystem services.

Use of Wild Relatives and Closely Related Species to Adapt Common Bean to Climate Change

Directory of Open Access Journals (Sweden)

James D. Kelly

2013-05-01

Full Text Available Common bean (Phaseolus vulgaris L. is an important legume crop worldwide. However, abiotic and biotic stress limits bean yields to <600 kg ha−1 in low-income countries. Current low yields result in food insecurity, while demands for increased yields to match the rate of population growth combined with the threat of climate change are significant. Novel and significant advances in genetic improvement using untapped genetic diversity available in crop wild relatives and closely related species must be further explored. A meeting was organized by the Global Crop Diversity Trust to consider strategies for common bean improvement. This review resulted from that meeting and considers our current understanding of the genetic resources available for common bean improvement and the progress that has been achieved thus far through introgression of genetic diversity from wild relatives of common bean, and from closely related species, including: P. acutifolius, P. coccineus, P. costaricensis and P. dumosus. Newly developed genomic tools and their potential applications are presented. A broad outline of research for use of these genetic resources for common bean improvement in a ten-year multi-disciplinary effort is presented.

Simulating changes in cropping practices in conventional and glyphosate-resistant maize. II. Weed impacts on crop production and biodiversity.

Science.gov (United States)

Colbach, Nathalie; Darmency, Henri; Fernier, Alice; Granger, Sylvie; Le Corre, Valérie; Messéan, Antoine

2017-05-01

Overreliance on the same herbicide mode of action leads to the spread of resistant weeds, which cancels the advantages of herbicide-tolerant (HT) crops. Here, the objective was to quantify, with simulations, the impact of glyphosate-resistant (GR) weeds on crop production and weed-related wild biodiversity in HT maize-based cropping systems differing in terms of management practices. We (1) simulated current conventional and probable HT cropping systems in two European regions, Aquitaine and Catalonia, with the weed dynamics model FLORSYS; (2) quantified how much the presence of GR weeds contributed to weed impacts on crop production and biodiversity; (3) determined the effect of cultural practices on the impact of GR weeds and (4) identified which species traits most influence weed-impact indicators. The simulation study showed that during the analysed 28 years, the advent of glyphosate resistance had little effect on plant biodiversity. Glyphosate-susceptible populations and species were replaced by GR ones. Including GR weeds only affected functional biodiversity (food offer for birds, bees and carabids) and weed harmfulness when weed effect was initially low; when weed effect was initially high, including GR weeds had little effect. The GR effect also depended on cultural practices, e.g. GR weeds were most detrimental for species equitability when maize was sown late. Species traits most harmful for crop production and most beneficial for biodiversity were identified, using RLQ analyses. None of the species presenting these traits belonged to a family for which glyphosate resistance was reported. An advice table was built; the effects of cultural practices on crop production and biodiversity were synthesized, explained, quantified and ranked, and the optimal choices for each management technique were identified.

Fungi pathogenic on wild radish (Raphanus raphanistrum L. in northern Tunisia

Directory of Open Access Journals (Sweden)

N. Djebali

2009-09-01

Full Text Available The distribution and life cycle of wild radish (Raphanus raphanistrum L. and a survey of the pathogens of this plant are reported for the northern regions of Tunisia. Wild radish is a common weed of cereal crops and legumes. It germinates in early autumn (October, develops a rosette stage in November to December after which stem growth, fl owering and pod production occur through to May, with pod maturity completed in June. Fungus isolation from the foliar tissues exhibiting disease symptoms showed that wild radish was infected with the fungi Albugo candida, Alternaria spp. including A. brassicicola, and A. raphani, Erysiphe cruciferarum, Stemphylium herbarum, Peronospora parasitica and Phoma lingam. Ascochyta spp., Cercospora armoraciae, Cladosporium cladosporioides and Colletotrichum higginsianum are here reported from wild radish for the first time. Inoculation tests of pathogens on wild radish plants showed that the most injurious fungi were Alternaria raphani and Phoma lingam. The remaining pathogens were weakly to moderately aggressive on this weed. To access the pathogenic effect of fungi spontaneously infecting natural populations of wild radish, the weed was grown in a field experiment with and without the broad-spectrum systemic fungicide Carbendazim. Results showed a statistically significant two-fold decrease in the number and weight of seed pods in the non-treated plants, indicating that the reproductive potential of wild radish was naturally reduced by fungal infection. Foliar pathogenic fungi have a potential in the integrated weed management of wild radish, this role merits further investigations.

Analysis on the arcelin expression in bruchid pest resistant wild pulses using real time RT-qPCR.

Science.gov (United States)

Sakthivelkumar, Shanmugavel; Veeramani, Velayutham; Hilda, Karuppiah; Arumugam, Munusamy; Janarthanan, Sundaram

2014-12-01

Arcelin, the antimetabolic protein from wild pulses is a known natural insecticidal molecule. Wild pulses with high arcelin content could serve as potential source to. increase the levels of insect resistance in cultivated pulse crops. In this study, arcelin (Arl) gene expression was screened in seven stored product insect pest resistant wild pulse varieties using real time RT-qPCR. Arcelin gene specific real time PCR primers were synthesized from arcelin mRNA sequence of the wild pulse variety, Lablab purpureus. The results revealed different levels of arcelin gene expression in the tested varieties. Canavalia virosa registered significantly high content indicating its suitability for utilization of arcelin gene in developing stored product insect pest resistance with other cultivated pulses.

Projected climate change threatens pollinators and crop production in Brazil.

Directory of Open Access Journals (Sweden)

Tereza Cristina Giannini

Full Text Available Animal pollination can impact food security since many crops depend on pollinators to produce fruits and seeds. However, the effects of projected climate change on crop pollinators and therefore on crop production are still unclear, especially for wild pollinators and aggregate community responses. Using species distributional modeling, we assessed the effects of climate change on the geographic distribution of 95 pollinator species of 13 Brazilian crops, and we estimated their relative impacts on crop production. We described these effects at the municipality level, and we assessed the crops that were grown, the gross production volume of these crops, the total crop production value, and the number of inhabitants. Overall, considering all crop species, we found that the projected climate change will reduce the probability of pollinator occurrence by almost 0.13 by 2050. Our models predict that almost 90% of the municipalities analyzed will face species loss. Decreases in the pollinator occurrence probability varied from 0.08 (persimmon to 0.25 (tomato and will potentially affect 9% (mandarin to 100% (sunflower of the municipalities that produce each crop. Municipalities in central and southern Brazil will potentially face relatively large impacts on crop production due to pollinator loss. In contrast, some municipalities in northern Brazil, particularly in the northwestern Amazon, could potentially benefit from climate change because pollinators of some crops may increase. The decline in the probability of pollinator occurrence is found in a large number of municipalities with the lowest GDP and will also likely affect some places where crop production is high (20% to 90% of the GDP and where the number of inhabitants is also high (more than 6 million people. Our study highlights key municipalities where crops are economically important and where pollinators will potentially face the worst conditions due to climate change. However, pollinators

Wild Vietnamese relatives of blueberries

Science.gov (United States)

rom 25 October to 14 November 2015, wild relatives of cultivated blueberry, Vaccinium corymbosum, were collected during a Vietnamese-US cooperative expedition in Northern Vietnam. The exploration involved representatives of the Plant Resources Center, Vietnam Academy of Agricultural Sciences, in Han...

Self-willed learning: experiments in wild pedagogy

Science.gov (United States)

Jickling, Bob

2015-03-01

This paper is comprised of written text and photographs of wild experiences that relive a series of ontological experiments. The text represents reflections on these experiences. The photographs, artistic expressions of the same experiences, have been made with a homemade pinhole camera—without a lens and viewfinder—thus demanding special sensual presence during creation. The form of this experimental work is reminiscent of a lyric philosophy that seeks to engage the participant—reader of text and viewer of images—with these experiments. Component pairings are arranged for viewing with text on the left and photographs on the right. Together these parings invite participants to explore patterned resonances in the world. Implicit throughout are considerations of relationships between wildness, wild learning, and a form of wild pedagogy.

Gene flow among wild and domesticated almond species: insights from chloroplast and nuclear markers

Science.gov (United States)

Delplancke, Malou; Alvarez, Nadir; Espíndola, Anahí; Joly, Hélène; Benoit, Laure; Brouck, Elise; Arrigo, Nils

2012-01-01

Hybridization has played a central role in the evolutionary history of domesticated plants. Notably, several breeding programs relying on gene introgression from the wild compartment have been performed in fruit tree species within the genus Prunus but few studies investigated spontaneous gene flow among wild and domesticated Prunus species. Consequently, a comprehensive understanding of genetic relationships and levels of gene flow between domesticated and wild Prunus species is needed. Combining nuclear and chloroplastic microsatellites, we investigated the gene flow and hybridization among two key almond tree species, the cultivated Prunus dulcis and one of the most widespread wild relative Prunus orientalis in the Fertile Crescent. We detected high genetic diversity levels in both species along with substantial and symmetric gene flow between the domesticated P. dulcis and the wild P. orientalis. These results were discussed in light of the cultivated species diversity, by outlining the frequent spontaneous genetic contributions of wild species to the domesticated compartment. In addition, crop-to-wild gene flow suggests that ad hoc transgene containment strategies would be required if genetically modified cultivars were introduced in the northwestern Mediterranean. PMID:25568053

Linking Land Cover Data and Crop Yields for Mapping and Assessment of Pollination Services in Europe

OpenAIRE

Grazia Zulian; Joachim Maes; Maria Luisa Paracchini

2013-01-01

Pollination is a key ecosystem service as many crops but in particular, fruits and vegetables are partially dependent on pollinating insects to produce food for human consumption. Here we assessed how pollination services are delivered at the European scale. We used this assessment to estimate the relative contribution of wild pollinators to crop production. We developed an index of relative pollination potential, which is defined as the relative potential or relative capacity of ecosystems t...

Existence of vigorous lineages of crop-wild hybrids in Lettuce under field conditions

NARCIS (Netherlands)

Hooftman, D.A.P.; Hartman, Y.; Oostermeijer, J.G.B.; den Nijs, J.C.M.

2009-01-01

Plant to plant gene flow is a route of environmental exposure for GM plants specifically since crosses with wild relatives could lead to the formation of more vigorous hybrids, which could increase the rate of introgression and the environmental impact. Here, we test the first step in the process of

Original Paper Weeds control through tree-crop associations in a ...

African Journals Online (AJOL)

these trees, two crops were grown: a shade tolerant crop (Colocasia esculenta, taro) ... The most represented weeds family in the open field was Poaceae while under both tree species, the ...... provided guide, corrections and supervision to.

Effect of wild Helianthus cytoplasms on agronomic and oil characteristics of cultivated sunflower (H. annuus L.)

Science.gov (United States)

Sunflower (Helianthus annuus L.) productions reliance on a single source of cytoplasmic male-sterility, PET1, derived from H. petiolaris Nutt., makes the crop genetically vulnerable. Twenty diverse cytoplasmic substitution lines from annual and perennial wild species were compared with the inbred li...

Increased nutritional value in food crops.

Science.gov (United States)

Goicoechea, Nieves; Antolín, M Carmen

2017-09-01

Modern agriculture and horticulture must combine two objectives that seem to be almost mutually exclusive: to satisfy the nutritional needs of an increasing human population and to minimize the negative impact on the environment. These two objectives are included in the Goal 2 of the 2030 Agenda for Sustainable Development of the United Nations: 'End hunger, achieve food security and improved nutrition and promote sustainable agriculture'. Enhancing the nutritional levels of vegetables would improve nutrient intake without requiring an increase in consumption. In this context, the use of beneficial rhizospheric microorganisms for improving, not only growth and yield, but also the nutrient quality of crops represents a promising tool that may respond to the challenges for modern agriculture and horticulture and represents an alternative to the genetic engineering of crops. This paper summarizes the state of the art, the current difficulties associated to the use of rhizospheric microorganisms as enhancers of the nutritional quality of food crops as well as the future prospects. © 2017 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology.

Starch Biosynthesis in Crop Plants

Directory of Open Access Journals (Sweden)

Ian J. Tetlow

2018-05-01

Full Text Available Starch is a water-insoluble polyglucan synthesized inside the plastids of plant tissues to provide a store of carbohydrate. Starch harvested from plant storage organs has probably represented the major source of calories for the human diet since before the dawn of civilization. Following the advent of agriculture and the building of complex societies, humans have maintained their dependence on high-yielding domesticated starch-forming crops such as cereals to meet food demands, livestock production, and many non-food applications. The top three crops in terms of acreage are cereals, grown primarily for the harvestable storage starch in the endosperm, although many starchy tuberous crops also provide an important source of calories for various communities around the world. Despite conservation in the core structure of the starch granule, starches from different botanical sources show a high degree of variability, which is exploited in many food and non-food applications. Understanding the factors underpinning starch production and its final structure are of critical importance in guiding future crop improvement endeavours. This special issue contains reviews on these topics and is intended to be a useful resource for researchers involved in improvement of starch-storing crops.

The game damages on agricultural crops in Croatia

Directory of Open Access Journals (Sweden)

Hrvoje Novosel

2012-12-01

Full Text Available Conflicts between wildlife and humans have been reported from all over the world, but in Croatia the extent and intensity of the conflict is increasing. Agricultural damage by game is a major concern for both agricultural and wildlife agencies at the national level. In this study 4,695 cases of game damage over a 4-year period were analysed. Results indicated that the total amount of economic impact on agriculture from game damage was significant. The distribution of payments shows that a majority of payments have lower economic value with an average amount of single payment being 477.08 €. The annual number of payments was found to have a negative correlation coefficient (-0.469 to the total payment amount for damages. According to the number of payments (68% of the number of payments and the payment amount (60% of total payment amount, the crop most often damaged was maize. Analysis of the data found that there was a negative growth trend of payment frequency and total payment amount for grape vineyards. The correlation between yearly number of payments and yearly production was not calculated for any crop. The high seasonal nature of payments was a determent of seasonal regression using a dummy variable regression (r2=0.93. A comparison of the monthly number of payments and monthly amounts is depicted by a time series using a seasonal line. The impact of wild boar damage on agriculture crops, in total, leads to the conclusion that this game species is a major problem. The results showed a specific subset of game damage in Croatia and, as such, it can be extrapolated to provide insight into the damage caused by wild boar in other countries.

Negative effects of pesticides on wild bee communities can be buffered by landscape context.

Science.gov (United States)

Park, Mia G; Blitzer, E J; Gibbs, Jason; Losey, John E; Danforth, Bryan N

2015-06-22

Wild bee communities provide underappreciated but critical agricultural pollination services. Given predicted global shortages in pollination services, managing agroecosystems to support thriving wild bee communities is, therefore, central to ensuring sustainable food production. Benefits of natural (including semi-natural) habitat for wild bee abundance and diversity on farms are well documented. By contrast, few studies have examined toxicity of pesticides on wild bees, let alone effects of farm-level pesticide exposure on entire bee communities. Whether beneficial natural areas could mediate effects of harmful pesticides on wild bees is also unknown. Here, we assess the effect of conventional pesticide use on the wild bee community visiting apple (Malus domestica) within a gradient of percentage natural area in the landscape. Wild bee community abundance and species richness decreased linearly with increasing pesticide use in orchards one year after application; however, pesticide effects on wild bees were buffered by increasing proportion of natural habitat in the surrounding landscape. A significant contribution of fungicides to observed pesticide effects suggests deleterious properties of a class of pesticides that was, until recently, considered benign to bees. Our results demonstrate extended benefits of natural areas for wild pollinators and highlight the importance of considering the landscape context when weighing up the costs of pest management on crop pollination services. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

Morphology, composition, and mixing state of primary particles from combustion sources ? crop residue, wood, and solid waste

OpenAIRE

Liu, Lei; Kong, Shaofei; Zhang, Yinxiao; Wang, Yuanyuan; Xu, Liang; Yan, Qin; Lingaswamy, A. P.; Shi, Zongbo; Lv, Senlin; Niu, Hongya; Shao, Longyi; Hu, Min; Zhang, Daizhou; Chen, Jianmin; Zhang, Xiaoye

2017-01-01

Morphology, composition, and mixing state of individual particles emitted from crop residue, wood, and solid waste combustion in a residential stove were analyzed using transmission electron microscopy (TEM). Our study showed that particles from crop residue and apple wood combustion were mainly organic matter (OM) in smoldering phase, whereas soot-OM internally mixed with K in flaming phase. Wild grass combustion in flaming phase released some Cl-rich-OM/soot particles and cardboard combusti...

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication.

Science.gov (United States)

Avni, Raz; Nave, Moran; Barad, Omer; Baruch, Kobi; Twardziok, Sven O; Gundlach, Heidrun; Hale, Iago; Mascher, Martin; Spannagl, Manuel; Wiebe, Krystalee; Jordan, Katherine W; Golan, Guy; Deek, Jasline; Ben-Zvi, Batsheva; Ben-Zvi, Gil; Himmelbach, Axel; MacLachlan, Ron P; Sharpe, Andrew G; Fritz, Allan; Ben-David, Roi; Budak, Hikmet; Fahima, Tzion; Korol, Abraham; Faris, Justin D; Hernandez, Alvaro; Mikel, Mark A; Levy, Avraham A; Steffenson, Brian; Maccaferri, Marco; Tuberosa, Roberto; Cattivelli, Luigi; Faccioli, Primetta; Ceriotti, Aldo; Kashkush, Khalil; Pourkheirandish, Mohammad; Komatsuda, Takao; Eilam, Tamar; Sela, Hanan; Sharon, Amir; Ohad, Nir; Chamovitz, Daniel A; Mayer, Klaus F X; Stein, Nils; Ronen, Gil; Peleg, Zvi; Pozniak, Curtis J; Akhunov, Eduard D; Distelfeld, Assaf

2017-07-07

Wheat ( Triticum spp.) is one of the founder crops that likely drove the Neolithic transition to sedentary agrarian societies in the Fertile Crescent more than 10,000 years ago. Identifying genetic modifications underlying wheat's domestication requires knowledge about the genome of its allo-tetraploid progenitor, wild emmer ( T. turgidum ssp. dicoccoides ). We report a 10.1-gigabase assembly of the 14 chromosomes of wild tetraploid wheat, as well as analyses of gene content, genome architecture, and genetic diversity. With this fully assembled polyploid wheat genome, we identified the causal mutations in Brittle Rachis 1 ( TtBtr1 ) genes controlling shattering, a key domestication trait. A study of genomic diversity among wild and domesticated accessions revealed genomic regions bearing the signature of selection under domestication. This reference assembly will serve as a resource for accelerating the genome-assisted improvement of modern wheat varieties. Copyright © 2017, American Association for the Advancement of Science.

Partial stem and leaf resistance against the fungal pathogen Botrytis cinerea in wild relatives of tomato

NARCIS (Netherlands)

Have, ten A.; Berloo, van R.; Lindhout, P.; Kan, van J.A.L.

2007-01-01

Tomato (Solanum lycopersicum) is one of many greenhouse crops that can be infected by the necrotrophic ascomycete Botrytis cinerea. Commercial cultivation of tomato is hampered by the lack of resistance. Quantitative resistance has been reported in wild tomato relatives, mostly based on leaf assays.

Weeds Cause Losses in Field Crops through Allelopathy

Directory of Open Access Journals (Sweden)

Ali ZOHAIB

2016-03-01

Full Text Available A large number of weeds are known to be associated with crops and causing economic losses. Weeds interfere with crops through competition and allelopathy. They produce secondary metabolites known as allelochemicals, which belong to numerous chemical classes such as phenolics, alkaloids, fatty acids, indoles, terpens etc. However, phenolics are the predominant class of allelochemicals. The allelochemicals release from weed plants takes place through leaf leachates, decomposition of plant residues, volatilization and root exudates. Weeds leave huge quantities of their residues in field and affect the associated, as well as succeeding crops, in various cropping systems. Liberation of allelochemicals from weeds affects the germination, stand establishment, growth, yield and physiology of crop plants. They cause substantial reduction in germination and growth of the crop plants by altering various physiological processes such as enzyme activity, protein synthesis, photosynthesis, respiration, cell division and enlargement, which ultimately leads to a significant reduction in crop yield. In crux, allelopathic weeds represent a potential threat for crop plants and cause economic losses.

Disaggregating and mapping crop statistics using hypertemporal remote sensing

Science.gov (United States)

Khan, M. R.; de Bie, C. A. J. M.; van Keulen, H.; Smaling, E. M. A.; Real, R.

2010-02-01

Governments compile their agricultural statistics in tabular form by administrative area, which gives no clue to the exact locations where specific crops are actually grown. Such data are poorly suited for early warning and assessment of crop production. 10-Daily satellite image time series of Andalucia, Spain, acquired since 1998 by the SPOT Vegetation Instrument in combination with reported crop area statistics were used to produce the required crop maps. Firstly, the 10-daily (1998-2006) 1-km resolution SPOT-Vegetation NDVI-images were used to stratify the study area in 45 map units through an iterative unsupervised classification process. Each unit represents an NDVI-profile showing changes in vegetation greenness over time which is assumed to relate to the types of land cover and land use present. Secondly, the areas of NDVI-units and the reported cropped areas by municipality were used to disaggregate the crop statistics. Adjusted R-squares were 98.8% for rainfed wheat, 97.5% for rainfed sunflower, and 76.5% for barley. Relating statistical data on areas cropped by municipality with the NDVI-based unit map showed that the selected crops were significantly related to specific NDVI-based map units. Other NDVI-profiles did not relate to the studied crops and represented other types of land use or land cover. The results were validated by using primary field data. These data were collected by the Spanish government from 2001 to 2005 through grid sampling within agricultural areas; each grid (block) contains three 700 m × 700 m segments. The validation showed 68%, 31% and 23% variability explained (adjusted R-squares) between the three produced maps and the thousands of segment data. Mainly variability within the delineated NDVI-units caused relatively low values; the units are internally heterogeneous. Variability between units is properly captured. The maps must accordingly be considered "small scale maps". These maps can be used to monitor crop performance of

Radiation balance of an alfalfa crop in Saudi Arabia

International Nuclear Information System (INIS)

Al-Yemeni, M.N.; Grace, J.

1995-01-01

Short-wave reflectivity or albedo is an important component of net radiation which represents the major determinant of radiation balance of crop surface. This study was conducted on an irrigated alfalfa crop field at Al-Kharj agricultural area in Saudi Arabia, grown according to normal agricultural practices. Data on radiation balance and crop cover were collected over a number of days from March to October 1986, crop albedo varying from 0–4 in early morning to 0–20 at noon, the overall mean value of the crop albedo being estimated at 0–26. The relation between the individual components of radiation balance was studied, and a significant correlation between incident radiation and net radiation was found. Possible causes responsible for changes in crop albedo were discussed. (author)

Evolutionary and domestication history of Cucurbita (pumpkin and squash) species inferred from 44 nuclear loci.

Science.gov (United States)

Kates, Heather R; Soltis, Pamela S; Soltis, Douglas E

2017-06-01

Phylogenetics can facilitate the study of plant domestication by resolving sister relationships between crops and their wild relatives, thereby identifying the ancestors of cultivated plants. Previous phylogenetic studies of the six Cucurbita crop lineages (pumpkins and squashes) and their wild relatives suggest histories of deep coalescence that complicate uncovering the genetic origins of the six crop taxa. We investigated the evolution of wild and domesticated Cucurbita using the most comprehensive and robust molecular-based phylogeny for Cucurbita to date based on 44 loci derived from introns of single-copy nuclear genes. We discovered novel relationships among Cucurbita species and recovered the first Cucurbita tree with well-supported resolution within species. Cucurbita comprises a clade of mesophytic annual species that includes all six crop taxa and a grade of xerophytic perennial species that represent the ancestral xerophytic habit of the genus. Based on phylogenetic resolution within-species we hypothesize that the magnitude of domestication bottlenecks varies among Cucurbita crop lineages. Our phylogeny clarifies how wild Cucurbita species are related to the domesticated taxa. We find close relationships between two wild species and crop lineages not previously identified. Expanded geographic sampling of key wild species is needed for improved understanding of the evolution of domesticated Cucurbita. Copyright © 2017 Elsevier Inc. All rights reserved.

Native wildflower plantings support wild bee abundance and diversity in agricultural landscapes across the United States.

Science.gov (United States)

Williams, Neal M; Ward, Kimiora L; Pope, Nathaniel; Isaacs, Rufus; Wilson, Julianna; May, Emily A; Ellis, Jamie; Daniels, Jaret; Pence, Akers; Ullmann, Katharina; Peters, Jeff

2015-12-01

Global trends in pollinator-dependent crops have raised awareness of the need to support managed and wild bee populations to ensure sustainable crop production. Provision of sufficient forage resources is a key element for promoting bee populations within human impacted landscapes, particularly those in agricultural lands where demand for pollination service is high and land use and management practices have reduced available flowering resources. Recent government incentives in North America and Europe support the planting of wildflowers to benefit pollinators; surprisingly, in North America there has been almost no rigorous testing of the performance of wildflower mixes, or their ability to support wild bee abundance and diversity. We tested different wildflower mixes in a spatially replicated, multiyear study in three regions of North America where production of pollinator-dependent crops is high: Florida, Michigan, and California. In each region, we quantified flowering among wildflower mixes composed of annual and perennial species, and with high and low relative diversity. We measured the abundance and species richness of wild bees, honey bees, and syrphid flies at each mix over two seasons. In each region, some but not all wildflower mixes provided significantly greater floral display area than unmanaged weedy control plots. Mixes also attracted greater abundance and richness of wild bees, although the identity of best mixes varied among regions. By partitioning floral display size from mix identity we show the importance of display size for attracting abundant and diverse wild bees. Season-long monitoring also revealed that designing mixes to provide continuous bloom throughout the growing season is critical to supporting the greatest pollinator species richness. Contrary to expectation, perennials bloomed in their first season, and complementarity in attraction of pollinators among annuals and perennials suggests that inclusion of functionally diverse

Simulation of Wild oat (Avena ludoviciana L. Competition on Winter Wheat (Triticum astivum Growth and Yield. I: Model Description and Validation

Directory of Open Access Journals (Sweden)

F Mondani

2015-09-01

Full Text Available Crop growth models could stimulate growth and development based on science principles and mathematical equations. They also able to evaluate effects of climate, soil, water and agronomic management practices on crop yield. In the present study, an eco-physiological simulation model developed to assess wild oat damage to winter wheat growth and yield. The general structure of this model is derived from LINTUL1 model which modified to wild oat competition against winter wheat. LINTUL1 model was developed for simulation of spring wheat potential production level. In this study, first, we added development stage (DVS and vernalization to LINTUL1 for simulation of winter wheat growth and development and then the model calibrated for potential production level. Finally, we incorporate harmful effects of wild oat to winter wheat growth and yield. Weather data used as input were average daily minimum and maximum temperature (°C and daily global radiation (MJ m-2 in Mashhad, Iran. Parameter values were derived from the literature. The model is written in Fortran Simulation Translator (FST programming language and then validated based on an experiment data. For these purposes different wild oat plant densities were arranged. The data of this experiment does not use for calibration. The results showed that this model was in general able to simulate the temporal changes in DVS of winter wheat and wild oat, total dry matter (TDM of winter wheat and wild oat and yield loss of wheat due to wild oat competition in all treatments, satisfactorily. Root mean square error (RMSE for winter wheat DVS, wild oat DVS, average winter wheat TDM, average wild oat TDM, and yield loss of winter wheat was 10.4, 14.5, 5.8, 7.6 and 7.5, respectively.

A survey of wild plant species for food use in Sicily (Italy) - results of a 3-year study in four Regional Parks.

Science.gov (United States)

Licata, Mario; Tuttolomondo, Teresa; Leto, Claudio; Virga, Giuseppe; Bonsangue, Giuseppe; Cammalleri, Ignazio; Gennaro, Maria Cristina; La Bella, Salvatore

2016-02-09

This paper illustrates the results of a study carried out in four Regional Parks of Sicily (Italy), concerning traditional knowledge on food use of wild plant species. The main aims of the paper were: (i) to verify which wild plant species are used for food purpose in the local culture based on information provided by elderly inhabitants (ii) to verify the presence of wild plant species which have not been cited for food use in previous studies in the Mediterranean area (iii) to determine how many of the most frequently cited wild plant species are cultivated by the local population in the four Sicilian Parks. Semi-structured interviews were carried out in the local communities of the four Regional Parks between 2007 and 2010. A total of 802 people over the age of 60 were interviewed. Cultural Importance Index was used to evaluate the level of importance given to any wild plant species as a food in the local culture. The level of appreciation of the wild plant species and the possible effects of wild plants on human health were also investigated. Local communities currently use a total number of 119 wild species for food purposes. Asteraceae and Brassicaceae were the most represented botanical families. In each of the four Sicilian Parks, Cichorium intybus L. and Foeniculum vulgare Mill. obtained the highest Cultural Importance Index values. Sixty-four species were indicated as also having medicinal properties. Leaves and other aerial plant parts were the parts most-used for the preparation of traditional recipes. The research shows that the level of traditional knowledge on the food uses of wild plant species in the study area is poor. The food uses of plants which are most likely to survive over time are those at the interface of food and medicine. Further agronomic studies are needed for a number of species with a view to introducing them as a crop into non-intensive agricultural systems.

Estimating yield gaps at the cropping system level.

Science.gov (United States)

Guilpart, Nicolas; Grassini, Patricio; Sadras, Victor O; Timsina, Jagadish; Cassman, Kenneth G

2017-05-01

Yield gap analyses of individual crops have been used to estimate opportunities for increasing crop production at local to global scales, thus providing information crucial to food security. However, increases in crop production can also be achieved by improving cropping system yield through modification of spatial and temporal arrangement of individual crops. In this paper we define the cropping system yield potential as the output from the combination of crops that gives the highest energy yield per unit of land and time, and the cropping system yield gap as the difference between actual energy yield of an existing cropping system and the cropping system yield potential. Then, we provide a framework to identify alternative cropping systems which can be evaluated against the current ones. A proof-of-concept is provided with irrigated rice-maize systems at four locations in Bangladesh that represent a range of climatic conditions in that country. The proposed framework identified (i) realistic alternative cropping systems at each location, and (ii) two locations where expected improvements in crop production from changes in cropping intensity (number of crops per year) were 43% to 64% higher than from improving the management of individual crops within the current cropping systems. The proposed framework provides a tool to help assess food production capacity of new systems ( e.g. with increased cropping intensity) arising from climate change, and assess resource requirements (water and N) and associated environmental footprint per unit of land and production of these new systems. By expanding yield gap analysis from individual crops to the cropping system level and applying it to new systems, this framework could also be helpful to bridge the gap between yield gap analysis and cropping/farming system design.

Crop model usefulness in drylands of southern Africa: an application ...

African Journals Online (AJOL)

Data limitations in southern Africa frequently hinder adequate assessment of crop models before application. ... three locations to represent varying cropping and physical conditions in southern Africa, i.e. maize and sorghum (Mohale's Hoek, Lesotho and Big Bend, Swaziland) and maize and groundnut (Lilongwe, Malawi).

Cover crops and crop residue management under no-till systems improve soils and environmental quality

Science.gov (United States)

Kumar, Sandeep; Wegner, Brianna; Vahyala, Ibrahim; Osborne, Shannon; Schumacher, Thomas; Lehman, Michael

2015-04-01

Crop residue harvest is a common practice in the Midwestern USA for the ethanol production. However, excessive removal of crop residues from the soil surface contributes to the degradation of important soil quality indicators such as soil organic carbon (SOC). Addition of a cover crop may help to mitigate these negative effects. The present study was set up to assess the impacts of corn (Zea mays L.) residue removal and cover crops on various soil quality indicators and surface greenhouse gas (GHG) fluxes. The study was being conducted on plots located at the North Central Agricultural Research Laboratory (NCARL) in Brookings, South Dakota, USA. Three plots of a corn and soybean (Glycine max (L.) Merr.) rotation under a no-till (NT) system are being monitored for soils and surface gas fluxes. Each plot has three residue removal (high residue removal, HRR; medium residue removal, MRR; and low residue removal, LRR) treatments and two cover crops (cover crops and no cover crops) treatments. Both corn and soybean are represented every year. Gas flux measurements were taken weekly using a closed static chamber method. Data show that residue removal significantly impacted soil quality indicators while more time was needed for an affect from cover crop treatments to be noticed. The LRR treatment resulted in higher SOC concentrations, increased aggregate stability, and increased microbial activity. The LRR treatment also increased soil organic matter (SOM) and particulate organic matter (POM) concentrations. Cover crops used in HRR (high corn residue removal) improved SOC (27 g kg-1) by 6% compared to that without cover crops (25.4 g kg-1). Cover crops significantly impacted POM concentration directly after the residue removal treatments were applied in 2012. CO2 fluxes were observed to increase as temperature increased, while N2O fluxes increased as soil moisture increased. CH4 fluxes were responsive to both increases in temperature and moisture. On average, soils under

Humic substances and its distribution in coffee crop under cover crops and weed control methods

Directory of Open Access Journals (Sweden)

Bruno Henrique Martins

2016-08-01

Full Text Available ABSTRACT Humic substances (HS comprise the passive element in soil organic matter (SOM, and represent one of the soil carbon pools which may be altered by different cover crops and weed control methods. This study aimed to assess HS distribution and characteristics in an experimental coffee crop area subjected to cover crops and cultural, mechanical, and chemical weed control. The study was carried out at Londrina, in the state of Paraná, southern Brazil (23°21’30” S; 51°10’17” W. In 2008, seven weed control/cover crops were established in a randomized block design between two coffee rows as the main-plot factor per plot and soil sampling depths (0-10 cm, 10-20 cm, 20-30 cm and 30-40 cm as a split-plot. HS were extracted through alkaline and acid solutions and analyzed by chromic acid wet oxidation and UV-Vis spectroscopy. Chemical attributes presented variations in the topsoil between the field conditions analyzed. Cover crop cutting and coffee tree pruning residues left on the soil surface may have interfered in nutrient cycling and the humification process. Data showed that humic substances comprised about 50 % of SOM. Although different cover crops and weed control methods did not alter humic and fulvic acid carbon content, a possible incidence of condensed aromatic structures at depth increments in fulvic acids was observed, leading to an average decrease of 53 % in the E4/E6 ratio. Humin carbon content increased 25 % in the topsoil, particularly under crop weed-control methods, probably due to high incorporation of recalcitrant structures from coffee tree pruning residues and cover crops.

Comparative analysis of kabuli chickpea transcriptome with desi and wild chickpea provides a rich resource for development of functional markers.

Directory of Open Access Journals (Sweden)

Gaurav Agarwal

Full Text Available Chickpea (Cicer arietinum L. is an important crop legume plant with high nutritional value. The transcriptomes of desi and wild chickpea have already been sequenced. In this study, we sequenced the transcriptome of kabuli chickpea, C. arietinum (genotype ICCV2, having higher commercial value, using GS-FLX Roche 454 and Illumina technologies. The assemblies of both Roche 454 and Illumina datasets were optimized using various assembly programs and parameters. The final optimized hybrid assembly generated 43,389 transcripts with an average length of 1065 bp and N50 length of 1653 bp representing 46.2 Mb of kabuli chickpea transcriptome. We identified a total of 5409 simple sequence repeats (SSRs in these transcript sequences. Among these, at least 130 and 493 SSRs were polymorphic with desi (ICC4958 and wild (PI489777 chickpea, respectively. In addition, a total of 1986 and 37,954 single nucleotide polymorphisms (SNPs were predicted in kabuli/desi and kabuli/wild genotypes, respectively. The SNP frequency was 0.043 SNP per kb for kabuli/desi and 0.821 SNP per kb for kabuli/wild, reflecting very low genetic diversity in chickpea. Further, SSRs and SNPs present in tissue-specific and transcription factor encoding transcripts have been identified. The experimental validation of a selected set of polymorphic SSRs and SNPs exhibited high intra-specific polymorphism potential between desi and kabuli chickpea, suggesting their utility in large-scale genotyping applications. The kabuli chickpea gene index assembled, and SSRs and SNPs identified in this study will serve as useful genomic resource for genetic improvement of chickpea.

Economic assessment and comparison of acacia energy crop with annual traditional crops in Southern Europe

International Nuclear Information System (INIS)

Gasol, Carles M.; Rieradevall, Joan; Gabarrell, Xavier; Brun, Filippo; Mosso, Angela

2010-01-01

In several policy documents bioenergy is recognized as an important renewable energy source in Italy. The increase in energy prices represents an opportunity for lignocellulosic energy crops such as acacia and poplar. However, for Short Rotation Coppice (SRC) and Short Rotation Forestry (SRF) to be adopted by farmers, these crops must be perceived to be at least as profitable as crops that normally compete with these plantations for land use. The purpose of this paper is to evaluate the economic feasibility of acacia (Robinia pseudoacacia) as an energy crop in a low input production regime in Italy and, in particular, to consider its competitiveness with wheat. Our results show that neither SRC and SRF techniques using assumed production costs (EUR3820 and EUR5285 ha -1 yr -1 ) nor biomass productions are able to obtain a positive profit (-EUR184 and -EUR172 ha -1 yr -1 ) that can convince farmers to invest in biomass plantations on their land. The results demonstrate that wheat is a more economically secure option than SRC or SRF. The viability of local biomass production in Italy and Southern Europe depends on the active support of the governments; without them, biomass is not economically competitive for the farmers when compared to crops such as wheat. (author)

The state of genetically modified crop regulation in Canada

Science.gov (United States)

Smyth, Stuart J

2014-01-01

Genetically modified (GM) crops were first commercialized in Canada in 1995 and the 2014 crop represents the 20th year of successful production. Prior to the first commercialization of GM crops, Canada reviewed its existing science-based regulatory framework and adapted the existing framework to allow for risk assessments on the new technology to be undertaken in a timely and efficient manner. The result has been the rapid and widespread adoption of GM varieties of canola, corn and soybeans. The first decade of GM crop production precipitated 2 landmark legal cases relating to patent infringement and economic liability, while the second decade witnessed increased political efforts to have GM crops labeled in Canada as well as significant challenges from the low level comingling of GM crops with non-GM commodities. This article reviews the 20 y of GM crop production in Canada from a social science perspective that includes intellectual property, consumer acceptance and low level presence. PMID:25437238

Evolution and Adaptation of Wild Emmer Wheat Populations to Biotic and Abiotic Stresses.

Science.gov (United States)

Huang, Lin; Raats, Dina; Sela, Hanan; Klymiuk, Valentina; Lidzbarsky, Gabriel; Feng, Lihua; Krugman, Tamar; Fahima, Tzion

2016-08-04

The genetic bottlenecks associated with plant domestication and subsequent selection in man-made agroecosystems have limited the genetic diversity of modern crops and increased their vulnerability to environmental stresses. Wild emmer wheat, the tetraploid progenitor of domesticated wheat, distributed along a wide range of ecogeographical conditions in the Fertile Crescent, has valuable "left behind" adaptive diversity to multiple diseases and environmental stresses. The biotic and abiotic stress responses are conferred by series of genes and quantitative trait loci (QTLs) that control complex resistance pathways. The study of genetic diversity, genomic organization, expression profiles, protein structure and function of biotic and abiotic stress-resistance genes, and QTLs could shed light on the evolutionary history and adaptation mechanisms of wild emmer populations for their natural habitats. The continuous evolution and adaptation of wild emmer to the changing environment provide novel solutions that can contribute to safeguarding food for the rapidly growing human population.

Beans (Phaseolus ssp.) as a Model for Understanding Crop Evolution

Science.gov (United States)

Bitocchi, Elena; Rau, Domenico; Bellucci, Elisa; Rodriguez, Monica; Murgia, Maria L.; Gioia, Tania; Santo, Debora; Nanni, Laura; Attene, Giovanna; Papa, Roberto

2017-01-01

Here, we aim to provide a comprehensive and up-to-date overview of the most significant outcomes in the literature regarding the origin of Phaseolus genus, the geographical distribution of the wild species, the domestication process, and the wide spread out of the centers of origin. Phaseolus can be considered as a unique model for the study of crop evolution, and in particular, for an understanding of the convergent phenotypic evolution that occurred under domestication. The almost unique situation that characterizes the Phaseolus genus is that five of its ∼70 species have been domesticated (i.e., Phaseolus vulgaris, P. coccineus, P. dumosus, P. acutifolius, and P. lunatus), and in addition, for P. vulgaris and P. lunatus, the wild forms are distributed in both Mesoamerica and South America, where at least two independent and isolated episodes of domestication occurred. Thus, at least seven independent domestication events occurred, which provides the possibility to unravel the genetic basis of the domestication process not only among species of the same genus, but also between gene pools within the same species. Along with this, other interesting features makes Phaseolus crops very useful in the study of evolution, including: (i) their recent divergence, and the high level of collinearity and synteny among their genomes; (ii) their different breeding systems and life history traits, from annual and autogamous, to perennial and allogamous; and (iii) their adaptation to different environments, not only in their centers of origin, but also out of the Americas, following their introduction and wide spread through different countries. In particular for P. vulgaris this resulted in the breaking of the spatial isolation of the Mesoamerican and Andean gene pools, which allowed spontaneous hybridization, thus increasing of the possibility of novel genotypes and phenotypes. This knowledge that is associated to the genetic resources that have been conserved ex situ and in

Automated phenotyping of permanent crops

Science.gov (United States)

McPeek, K. Thomas; Steddom, Karl; Zamudio, Joseph; Pant, Paras; Mullenbach, Tyler

2017-05-01

AGERpoint is defining a new technology space for the growers' industry by introducing novel applications for sensor technology and data analysis to growers of permanent crops. Serving data to a state-of-the-art analytics engine from a cutting edge sensor platform, a new paradigm in precision agriculture is being developed that allows growers to understand the unique needs of each tree, bush or vine in their operation. Autonomous aerial and terrestrial vehicles equipped with multiple varieties of remote sensing technologies give AGERpoint the ability to measure key morphological and spectral features of permanent crops. This work demonstrates how such phenotypic measurements combined with machine learning algorithms can be used to determine the variety of crops (e.g., almond and pecan trees). This phenotypic and varietal information represents the first step in enabling growers with the ability to tailor their management practices to individual plants and maximize their economic productivity.

Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects

Directory of Open Access Journals (Sweden)

Chittaranjan eKole

2015-08-01

Full Text Available Climate change affects agricultural productivity worldwide. Increased prices of food commodities are the initial indication of drastic edible yield loss, which is expected to surge further due to global warming. This situation has compelled plant scientists to develop climate change-resilient crops, which can withstand broad-spectrum stresses such as drought, heat, cold, salinity, flood and submergence, and pests along with increased productivity. Genomics appears to be a promising tool for deciphering the stress responsiveness of crop species with adaptation traits or in wild relatives towards identifying underlying genes, alleles or quantitative trait loci. Molecular breeding approaches have been proven helpful in enhancing the stress adaptation of crop plants, and recent advancement in next-generation sequencing along with high-throughput sequencing and phenotyping platforms have transformed molecular breeding to genomics-assisted breeding (GAB. In view of this, the present review elaborates the progress and prospects of GAB in improving climate change resilience in crop plants towards circumventing global food insecurity.

JULES-crop: a parametrisation of crops in the Joint UK Land Environment Simulator

Science.gov (United States)

Osborne, T.; Gornall, J.; Hooker, J.; Williams, K.; Wiltshire, A.; Betts, R.; Wheeler, T.

2014-10-01

Studies of climate change impacts on the terrestrial biosphere have been completed without recognition of the integrated nature of the biosphere. Improved assessment of the impacts of climate change on food and water security requires the development and use of models not only representing each component but also their interactions. To meet this requirement the Joint UK Land Environment Simulator (JULES) land surface model has been modified to include a generic parametrisation of annual crops. The new model, JULES-crop, is described and evaluation at global and site levels for the four globally important crops; wheat, soy bean, maize and rice is presented. JULES-crop demonstrates skill in simulating the inter-annual variations of yield for maize and soy bean at the global level, and for wheat for major spring wheat producing countries. The impact of the new parametrisation, compared to the standard configuration, on the simulation of surface heat fluxes is largely an alteration of the partitioning between latent and sensible heat fluxes during the later part of the growing season. Further evaluation at the site level shows the model captures the seasonality of leaf area index and canopy height better than in standard JULES. However, this does not lead to an improvement in the simulation of sensible and latent heat fluxes. The performance of JULES-crop from both an earth system and crop yield model perspective is encouraging however, more effort is needed to develop the parameterisation of the model for specific applications. Key future model developments identified include the specification of the yield gap to enable better representation of the spatial variability in yield.

Network Candidate Genes in Breeding for Drought Tolerant Crops

Directory of Open Access Journals (Sweden)

Christoph Tim Krannich

2015-07-01

Full Text Available Climate change leading to increased periods of low water availability as well as increasing demands for food in the coming years makes breeding for drought tolerant crops a high priority. Plants have developed diverse strategies and mechanisms to survive drought stress. However, most of these represent drought escape or avoidance strategies like early flowering or low stomatal conductance that are not applicable in breeding for crops with high yields under drought conditions. Even though a great deal of research is ongoing, especially in cereals, in this regard, not all mechanisms involved in drought tolerance are yet understood. The identification of candidate genes for drought tolerance that have a high potential to be used for breeding drought tolerant crops represents a challenge. Breeding for drought tolerant crops has to focus on acceptable yields under water-limited conditions and not on survival. However, as more and more knowledge about the complex networks and the cross talk during drought is available, more options are revealed. In addition, it has to be considered that conditioning a crop for drought tolerance might require the production of metabolites and might cost the plants energy and resources that cannot be used in terms of yield. Recent research indicates that yield penalty exists and efficient breeding for drought tolerant crops with acceptable yields under well-watered and drought conditions might require uncoupling yield penalty from drought tolerance.

RNA interference in designing transgenic crops.

Science.gov (United States)

Ali, Nusrat; Datta, Swapan K; Datta, Karabi

2010-01-01

RNA interference (RNAi) is a sequence specific gene silencing mechanism, triggered by the introduction of dsRNA leading to mRNA degradation. It helps in switching on and off the targeted gene, which might have significant impact in developmental biology. Discovery of RNAi represents one of the most promising and rapidly advancing frontiers in plant functional genomics and in crop improvement by plant metabolic engineering and also plays an important role in reduction of allergenicity by silencing specific plant allergens. In plants the RNAi technology has been employed successfully in improvement of several plant species- by increasing their nutritional value, overall quality and by conferring resistance against pathogens and diseases. The review gives an insight to the perspective use of the technology in designing crops with innovation, to bring improvement to crop productivity and quality.

Could Crop Height Affect the Wind Resource at Agriculturally Productive Wind Farm Sites?

Science.gov (United States)

Vanderwende, Brian; Lundquist, Julie K.

2016-03-01

The collocation of cropland and wind turbines in the US Midwest region introduces complex meteorological interactions that could influence both agriculture and wind-power production. Crop management practices may affect the wind resource through alterations of land-surface properties. We use the weather research and forecasting (WRF) model to estimate the impact of crop height variations on the wind resource in the presence of a large turbine array. A hypothetical wind farm consisting of 121 1.8-MW turbines is represented using the WRF model wind-farm parametrization. We represent the impact of selecting soybeans rather than maize by altering the aerodynamic roughness length in a region approximately 65 times larger than that occupied by the turbine array. Roughness lengths of 0.1 and 0.25 m represent the mature soy crop and a mature maize crop, respectively. In all but the most stable atmospheric conditions, statistically significant hub-height wind-speed increases and rotor-layer wind-shear reductions result from switching from maize to soybeans. Based on simulations for the entire month of August 2013, wind-farm energy output increases by 14 %, which would yield a significant monetary gain. Further investigation is required to determine the optimal size, shape, and crop height of the roughness modification to maximize the economic benefit and minimize the cost of such crop-management practices. These considerations must be balanced by other influences on crop choice such as soil requirements and commodity prices.

WILD PIGS: BIOLOGY, DAMAGE, CONTROL TECHINQUES AND MANAGEMENT

Energy Technology Data Exchange (ETDEWEB)

Mayer, John; Brisbin, I. Lehr

2009-12-31

The existence of problems with wild pigs (Sus scrofa) is nothing new to the Western Hemisphere. Damage by these introduced animals was reported as far back as 1505 by the early Spanish colonies in the Caribbean, where wild pigs were killing the colonists cattle. Droves of these animals also ravaged cultivated crops of maize and sugarcane on islands in the West Indies during this same time period. These wild pigs reportedly were very aggressive and often attacked Spanish soldiers hunting rebellious Indians or escaped slaves on these islands, especially when these animals were cornered. The documentation of such impacts by introduced populations of this species in the United States has subsequently increased in recent years, and continued up through the present (Towne and Wentworth. 1950, Wood and Barrett 1979, Mayer and Brisbin 1991, Dickson et al. 2001). In spite of a fairly constant history in this country since the early 1900s, wild pigs have had a dramatic recent increase in both distribution and numbers in the United States. Between 1989 and 2009, the number of states reporting the presence of introduced wild pigs went from 19 up to as many as 44. This increase, in part natural, but largely manmade, has caused an increased workload and cost for land and resource managers in areas where these new populations are found. This is the direct result of the damage that these introduced animals do. The cost of both these impacts and control efforts has been estimated to exceed a billion dollars annually (Pimentel 2007). The complexity of this problem has been further complicated by the widespread appeal and economic potential of these animals as a big game species (Tisdell 1982, Degner 1989). Wild pigs are a controversial problem that is not going away and will likely only get worse with time. Not only do they cause damage, but wild pigs are also survivors. They reproduce at a rate faster than any other mammal of comparable size, native or introduced; they can eat just

Addressing crop interactions within cropping systems in LCA

DEFF Research Database (Denmark)

Goglio, Pietro; Brankatschk, Gerhard; Knudsen, Marie Trydeman

2018-01-01

objectives of this discussion article are as follows: (i) to discuss the characteristics of cropping systems which might affect the LCA methodology, (ii) to discuss the advantages and the disadvantages of the current available methods for the life-cycle assessment of cropping systems, and (iii) to offer...... management and emissions, and (3) functional unit issues. The LCA approaches presented are as follows: cropping system, allocation approaches, crop-by-crop approach, and combined approaches. The various approaches are described together with their advantages and disadvantages, applicability...... considers cropping system issues if they are related to multiproduct and nutrient cycling, while the crop-by-crop approach is highly affected by assumptions and considers cropping system issues only if they are related to the analyzed crop. Conclusions Each LCA approach presents advantages and disadvantages...

Diversity of use and local knowledge of wild edible plant resources in Nepal

Directory of Open Access Journals (Sweden)

Uprety Yadav

2012-04-01

Full Text Available Abstract Background Wild edible plants (WEP provide staple and supplement foods, as well as cash income to local communities, thus favouring food security. However, WEP are largely ignored in land use planning and implementation, economic development, and biodiversity conservation. Moreover, WEP-related traditional knowledge is rapidly eroding. Therefore, we designed this study to fulfill a part of the knowledge gap by providing data on diversity, traditional knowledge, economic potential, and conservation value of WEP from Nepal. Methods The information was collected through focus group discussions and key informant interviews. Percentage of general utility of the plants among the study communities was evaluated using the Chi-square (χ2 test of homogeneity. High priority species were identified after consultation with the local stakeholders followed by scoring based on defined criteria. Pairwise ranking was used to assess ethnoecological knowledge to identify the threats to WEP. Results We documented 81 species belonging to Angiosperms (74, Pteridophytes (5, and Fungi (2. Most of the species were used as fruits (44 species followed by vegetables (36. Almost half of the species (47% were also used for purposes other than food. From the species with market value (37% of the total, 10 were identified as high priority species. Pairwise ranking revealed that WEP are threatened mostly by habitat destruction, land-use change and over-harvesting. Some of these plants are crop wild relatives and could thus be used for crop improvement. Interestingly, our study also revealed that young people who spend most of the time in the forest as herdsmen are particularly knowledgeable of wild fruit plants. Conclusion We provide empirical evidence from a relatively large area of Nepal about diversity and status of WEP, as well as methodological insights about the proper knowledge holders to consult. Regarding the unique and important knowledge they have on WEP

Back to the Origin: In Situ Studies Are Needed to Understand Selection during Crop Diversification

Directory of Open Access Journals (Sweden)

Yolanda H. Chen

2017-10-01

Full Text Available Crop domestication has been embraced as a model system to study the genetics of plant evolution. Yet, the role of the environment, including biotic forces such as microbial and insect communities, in contributing to crop phenotypes under domestication and diversification has been poorly explored. In particular, there has been limited progress in understanding how human selection, agricultural cultivation (soil disturbance, fertilization, and irrigation, and biotic forces act as selective pressures on crop phenotypes. For example, geographically-structured pathogenic, pestiferous, and mutualistic interactions with crop plants have likely given rise to landraces that interact differently with local microbial and insect communities. In order to understand the adaptive role of crop traits, we argue that more studies should be conducted in the geographic centers of origin to test hypotheses on how abiotic, biotic, and human selective forces have shaped the phenotypes of domesticated plants during crop domestication and subsequent diversification into landraces. In these centers of origin, locally endemic species associated with wild ancestors have likely contributed to the selection on plant phenotypes. We address a range of questions that can only be studied in the geographic center of crop origin, placing emphasis on Mesoamerican polyculture systems, and highlight the significance of in situ studies for increasing the sustainability of modern agricultural systems.

Bio-fortification potential of global wild annual lentil core collection.

Directory of Open Access Journals (Sweden)

Sandeep Kumar

Full Text Available Lentil, generally known as poor man's' meat due to its high protein value is also a good source of dietary fiber, antioxidants and vitamins along with fast cooking characteristics. It could be used globally as a staple food crop to eradicate hidden hunger, if this nutritionally rich crop is further enriched with essential minerals. This requires identification of essential mineral rich germplasm. So, in the present study, a core set of 96 wild accessions extracted from 405 global wild annual collections comprising different species was analyzed to determine its bio-fortification potential. Impressive variation (mg/100 g was observed for different minerals including Na (30-318, K (138.29-1578, P (37.50-593.75, Ca (4.74-188.75, Mg (15-159, Fe (2.82-14.12, Zn (1.29-12.62, Cu (0.5-7.12, Mn (1.22-9.99, Mo (1.02-11.89, Ni (0.16-3.49, Pb (0.01-0.58, Cd (0-0.03, Co (0-0.63 and As (0-0.02. Hierarchical clustering revealed high intra- and inter-specific variability. Further, correlation study showed positive significant association among minerals and between minerals including agro-morphological traits. Accessions representation from Turkey and Syria had maximum variability for different minerals. Diversity analysis exhibited wide geographical variations across gene-pool in core set. Potential use of the identified trait-specific genetic resources could be initial genetic material, for genetic base broadening and biofortification of cultivated lentil.

Comparative Transcriptome Analysis of Cultivated and Wild Watermelon during Fruit Development.

Science.gov (United States)

Guo, Shaogui; Sun, Honghe; Zhang, Haiying; Liu, Jingan; Ren, Yi; Gong, Guoyi; Jiao, Chen; Zheng, Yi; Yang, Wencai; Fei, Zhangjun; Xu, Yong

2015-01-01

Watermelon [Citrullus lanatus (Thunb.) Matsum. & Nakai] is an important vegetable crop world-wide. Watermelon fruit quality is a complex trait determined by various factors such as sugar content, flesh color and flesh texture. Fruit quality and developmental process of cultivated and wild watermelon are highly different. To systematically understand the molecular basis of these differences, we compared transcriptome profiles of fruit tissues of cultivated watermelon 97103 and wild watermelon PI296341-FR. We identified 2,452, 826 and 322 differentially expressed genes in cultivated flesh, cultivated mesocarp and wild flesh, respectively, during fruit development. Gene ontology enrichment analysis of these genes indicated that biological processes and metabolic pathways related to fruit quality such as sweetness and flavor were significantly changed only in the flesh of 97103 during fruit development, while those related to abiotic stress response were changed mainly in the flesh of PI296341-FR. Our comparative transcriptome profiling analysis identified critical genes potentially involved in controlling fruit quality traits including α-galactosidase, invertase, UDP-galactose/glucose pyrophosphorylase and sugar transporter genes involved in the determination of fruit sugar content, phytoene synthase, β-carotene hydroxylase, 9-cis-epoxycarotenoid dioxygenase and carotenoid cleavage dioxygenase genes involved in carotenoid metabolism, and 4-coumarate:coenzyme A ligase, cellulose synthase, pectinesterase, pectinesterase inhibitor, polygalacturonase inhibitor and α-mannosidase genes involved in the regulation of flesh texture. In addition, we found that genes in the ethylene biosynthesis and signaling pathway including ACC oxidase, ethylene receptor and ethylene responsive factor showed highly ripening-associated expression patterns, indicating a possible role of ethylene in fruit development and ripening of watermelon, a non-climacteric fruit. Our analysis provides

Reducing the negative human-health impacts of bioenergy crop emissions through region-specific crop selection

International Nuclear Information System (INIS)

Porter, William C; Rosenstiel, Todd N; Barsanti, Kelley; Guenther, Alex; Lamarque, Jean-Francois

2015-01-01

An expected global increase in bioenergy-crop cultivation as an alternative to fossil fuels will have consequences on both global climate and local air quality through changes in biogenic emissions of volatile organic compounds (VOCs). While greenhouse gas emissions may be reduced through the substitution of next-generation bioenergy crops such as eucalyptus, giant reed, and switchgrass for fossil fuels, the choice of species has important ramifications for human health, potentially reducing the benefits of conversion due to increases in ozone (O 3 ) and fine particulate matter (PM 2.5 ) levels as a result of large changes in biogenic emissions. Using the Community Earth System Model we simulate the conversion of marginal and underutilized croplands worldwide to bioenergy crops under varying future anthropogenic emissions scenarios. A conservative global replacement using high VOC-emitting crop profiles leads to modeled population-weighted O 3 increases of 5–27 ppb in India, 1–9 ppb in China, and 1–6 ppb in the United States, with peak PM 2.5 increases of up to 2 μg m −3 . We present a metric for the regional evaluation of candidate bioenergy crops, as well as results for the application of this metric to four representative emissions profiles using four replacement scales (10–100% maximum estimated available land). Finally, we assess the total health and climate impacts of biogenic emissions, finding that the negative consequences of using high-emitting crops could exceed 50% of the positive benefits of reduced fossil fuel emissions in value. (letter)

Succession influences wild bees in a temperate forest landscape: the value of early successional stages in naturally regenerated and planted forests.

Science.gov (United States)

Taki, Hisatomo; Okochi, Isamu; Okabe, Kimiko; Inoue, Takenari; Goto, Hideaki; Matsumura, Takeshi; Makino, Shun'ichi

2013-01-01

In many temperate terrestrial forest ecosystems, both natural human disturbances drive the reestablishment of forests. Succession in plant communities, in addition to reforestation following the creation of open sites through harvesting or natural disturbances, can affect forest faunal assemblages. Wild bees perform an important ecosystem function in human-altered and natural or seminatural ecosystems, as they are essential pollinators for both crops and wild flowering plants. To maintain high abundance and species richness for pollination services, it is important to conserve and create seminatural and natural land cover with optimal successional stages for wild bees. We examined the effects of forest succession on wild bees. In particular, we evaluated the importance of early successional stages for bees, which has been suspected but not previously demonstrated. A range of successional stages, between 1 and 178 years old, were examined in naturally regenerated and planted forests. In total 4465 wild bee individuals, representing 113 species, were captured. Results for total bees, solitary bees, and cleptoparasitic bees in both naturally regenerated and planted conifer forests indicated a higher abundance and species richness in the early successional stages. However, higher abundance and species richness of social bees in naturally regenerated forest were observed as the successional stages progressed, whereas the abundance of social bees in conifer planted forest showed a concave-shaped relationship when plotted. The results suggest that early successional stages of both naturally regenerated and conifer planted forest maintain a high abundance and species richness of solitary bees and their cleptoparasitic bees, although social bees respond differently in the early successional stages. This may imply that, in some cases, active forest stand management policies, such as the clear-cutting of planted forests for timber production, would create early successional

Succession influences wild bees in a temperate forest landscape: the value of early successional stages in naturally regenerated and planted forests.

Directory of Open Access Journals (Sweden)

Hisatomo Taki

Full Text Available In many temperate terrestrial forest ecosystems, both natural human disturbances drive the reestablishment of forests. Succession in plant communities, in addition to reforestation following the creation of open sites through harvesting or natural disturbances, can affect forest faunal assemblages. Wild bees perform an important ecosystem function in human-altered and natural or seminatural ecosystems, as they are essential pollinators for both crops and wild flowering plants. To maintain high abundance and species richness for pollination services, it is important to conserve and create seminatural and natural land cover with optimal successional stages for wild bees. We examined the effects of forest succession on wild bees. In particular, we evaluated the importance of early successional stages for bees, which has been suspected but not previously demonstrated. A range of successional stages, between 1 and 178 years old, were examined in naturally regenerated and planted forests. In total 4465 wild bee individuals, representing 113 species, were captured. Results for total bees, solitary bees, and cleptoparasitic bees in both naturally regenerated and planted conifer forests indicated a higher abundance and species richness in the early successional stages. However, higher abundance and species richness of social bees in naturally regenerated forest were observed as the successional stages progressed, whereas the abundance of social bees in conifer planted forest showed a concave-shaped relationship when plotted. The results suggest that early successional stages of both naturally regenerated and conifer planted forest maintain a high abundance and species richness of solitary bees and their cleptoparasitic bees, although social bees respond differently in the early successional stages. This may imply that, in some cases, active forest stand management policies, such as the clear-cutting of planted forests for timber production, would create

Watershed Scale Optimization to Meet Sustainable Cellulosic Energy Crop Demand

Energy Technology Data Exchange (ETDEWEB)

Chaubey, Indrajeet [Purdue Univ., West Lafayette, IN (United States); Cibin, Raj [Purdue Univ., West Lafayette, IN (United States); Bowling, Laura [Purdue Univ., West Lafayette, IN (United States); Brouder, Sylvie [Purdue Univ., West Lafayette, IN (United States); Cherkauer, Keith [Purdue Univ., West Lafayette, IN (United States); Engel, Bernard [Purdue Univ., West Lafayette, IN (United States); Frankenberger, Jane [Purdue Univ., West Lafayette, IN (United States); Goforth, Reuben [Purdue Univ., West Lafayette, IN (United States); Gramig, Benjamin [Purdue Univ., West Lafayette, IN (United States); Volenec, Jeffrey [Purdue Univ., West Lafayette, IN (United States)

2017-03-24

The overall goal of this project was to conduct a watershed-scale sustainability assessment of multiple species of energy crops and removal of crop residues within two watersheds (Wildcat Creek, and St. Joseph River) representative of conditions in the Upper Midwest. The sustainability assessment included bioenergy feedstock production impacts on environmental quality, economic costs of production, and ecosystem services.

Malaysian weedy rice shows its true stripes: wild Oryza and elite rice cultivars shape agricultural weed evolution in Southeast Asia.

Science.gov (United States)

Song, Beng-Kah; Chuah, Tse-Seng; Tam, Sheh May; Olsen, Kenneth M

2014-10-01

Weedy rice is a close relative of domesticated rice (Oryza sativa) that competes aggressively with the crop and limits rice productivity worldwide. Most genetic studies of weedy rice have focused on populations in regions where no reproductively compatible wild Oryza species occur (North America, Europe and northern Asia). Here, we examined the population genetics of weedy rice in Malaysia, where wild rice (O. rufipogon) can be found growing in close proximity to cultivated and weedy rice. Using 375 accessions and a combined analysis of 24 neutral SSR loci and two rice domestication genes (sh4, controlling seed shattering, and Bh4, controlling hull colour), we addressed the following questions: (i) What is the relationship of Malaysian weedy rice to domesticated and wild rice, and to weedy rice strains in the USA? (ii) To what extent does the presence of O. rufipogon influence the genetic and phenotypic diversity of Malaysian weeds? (iii) What do the distributions of sh4 and Bh4 alleles and associated phenotypes reveal about the origin and contemporary evolution of Malaysian weedy rice? Our results reveal the following: independent evolutionary origins for Malaysian weeds and US strains, despite their very close phenotypic resemblance; wild-to-weed gene flow in Malaysian weed populations, including apparent adaptive introgression of seed-shattering alleles; and a prominent role for modern Malaysian cultivars in the origin and recent proliferation of Malaysian weeds. These findings suggest that the genetic complexity and adaptability of weedy crop relatives can be profoundly influenced by proximity to reproductively compatible wild and domesticated populations. © 2014 John Wiley & Sons Ltd.

Effects of input uncertainty on cross-scale crop modeling

Science.gov (United States)

Waha, Katharina; Huth, Neil; Carberry, Peter

2014-05-01

data from very little to very detailed information, and compare the models' abilities to represent the spatial variability and temporal variability in crop yields. We display the uncertainty in crop yield simulations from different input data and crop models in Taylor diagrams which are a graphical summary of the similarity between simulations and observations (Taylor, 2001). The observed spatial variability can be represented well from both models (R=0.6-0.8) but APSIM predicts higher spatial variability than LPJmL due to its sensitivity to soil parameters. Simulations with the same crop model, climate and sowing dates have similar statistics and therefore similar skill to reproduce the observed spatial variability. Soil data is less important for the skill of a crop model to reproduce the observed spatial variability. However, the uncertainty in simulated spatial variability from the two crop models is larger than from input data settings and APSIM is more sensitive to input data then LPJmL. Even with a detailed, point-scale crop model and detailed input data it is difficult to capture the complexity and diversity in maize cropping systems.

Reformulation of Crop and Management Factor in ANSWERS Model

Directory of Open Access Journals (Sweden)

Yayat Hidayat

2008-05-01

Full Text Available Crop and management factor value is significantly corelated with outputs of ANSWERS model especially on soil erosion. Using daily crop and management factors (daily C factors, the ANSWERS model performs well in predicting soil erosion which is showed by determination coeffient (R2 = 0.89, model efficiency (0.86, and average of percentage model deviations (24.1%. Whereas using USLE C factor (2 cropping systems, predicted is much higher than measured soil erosion (over estimate. Output of the model is not statisfy; it is represented by model coefficient (0.40 and average of percentage model deviations (63.6%.

Crop improvement using life cycle datasets acquired under field conditions.

Science.gov (United States)

Mochida, Keiichi; Saisho, Daisuke; Hirayama, Takashi

2015-01-01

Crops are exposed to various environmental stresses in the field throughout their life cycle. Modern plant science has provided remarkable insights into the molecular networks of plant stress responses in laboratory conditions, but the responses of different crops to environmental stresses in the field need to be elucidated. Recent advances in omics analytical techniques and information technology have enabled us to integrate data from a spectrum of physiological metrics of field crops. The interdisciplinary efforts of plant science and data science enable us to explore factors that affect crop productivity and identify stress tolerance-related genes and alleles. Here, we describe recent advances in technologies that are key components for data driven crop design, such as population genomics, chronological omics analyses, and computer-aided molecular network prediction. Integration of the outcomes from these technologies will accelerate our understanding of crop phenology under practical field situations and identify key characteristics to represent crop stress status. These elements would help us to genetically engineer "designed crops" to prevent yield shortfalls because of environmental fluctuations due to future climate change.

Crop improvement using life cycle datasets acquired under field conditions

Directory of Open Access Journals (Sweden)

Keiichi eMochida

2015-09-01

Full Text Available Crops are exposed to various environmental stresses in the field throughout their life cycle. Modern plant science has provided remarkable insights into the molecular networks of plant stress responses in laboratory conditions, but the responses of different crops to environmental stresses in the field need to be elucidated. Recent advances in omics analytical techniques and information technology have enabled us to integrate data from a spectrum of physiological metrics of field crops. The interdisciplinary efforts of plant science and data science enable us to explore factors that affect crop productivity and identify stress tolerance-related genes and alleles. Here, we describe recent advances in technologies that are key components for data driven crop design, such as population genomics, chronological omics analyses, and computer-aided molecular network prediction. Integration of the outcomes from these technologies will accelerate our understanding of crop phenology under practical field situations and identify key characteristics to represent crop stress status. These elements would help us to genetically engineer designed crops to prevent yield shortfalls because of environmental fluctuations due to future climate change.

Allelopathic effect of ryegrass (lolium persicum) and wild mustard (sinapis arvensis) on barley

International Nuclear Information System (INIS)

Baziar, M.R.; Farahvash, F.; Mirshekari, B.; Rashidi, V.

2014-01-01

Most crop plants and weeds have allelopathic effects and analysis of these effects on plants in crop alteration and successive planting is very important. In this research the allelopathic ability of different parts and concentrations of two weeds, Lolium Persicum (Ryegrass) and Sinapis arvensis (wild mustered), on growth characteristics of two barley varieties was studied in the greenhouse using a completely randomized design with four replications. Test factors consisted of two barley varieties (Valfajr and Rehane), three weed organs (root, stalk, leaf) and four concentrations of extracts of weed organs (25, 50, 75 and control or distilled water). After the preparation of extracts of different weed organs with different concentrations, their effect on growth characteristics of barley plant was evaluated. Finally, seedling length, rootlet length caulicle length, wet weight of seedling, dry weight of seedling were measured. Also, the above two seeds had significant effects on the two strains of barley and could influence growth characteristics of barley. Based on the results of present study, one can argue that Ryegrass (Lolium Persicum) and wild mustard (Sinapis arvensis) can strongly affect germination, growth and performance of barley through production of chemical materials with allelopathic properties, leading unfavorable growth and product yield. (author)

Impact of crop residue management on crop production and soil chemistry after seven years of crop rotation in temperate climate, loamy soils.

Science.gov (United States)

Hiel, Marie-Pierre; Barbieux, Sophie; Pierreux, Jérôme; Olivier, Claire; Lobet, Guillaume; Roisin, Christian; Garré, Sarah; Colinet, Gilles; Bodson, Bernard; Dumont, Benjamin

2018-01-01

Society is increasingly demanding a more sustainable management of agro-ecosystems in a context of climate change and an ever growing global population. The fate of crop residues is one of the important management aspects under debate, since it represents an unneglectable quantity of organic matter which can be kept in or removed from the agro-ecosystem. The topic of residue management is not new, but the need for global conclusion on the impact of crop residue management on the agro-ecosystem linked to local pedo-climatic conditions has become apparent with an increasing amount of studies showing a diversity of conclusions. This study specifically focusses on temperate climate and loamy soil using a seven-year data set. Between 2008 and 2016, we compared four contrasting residue management strategies differing in the amount of crop residues returned to the soil (incorporation vs. exportation of residues) and in the type of tillage (reduced tillage (10 cm depth) vs. conventional tillage (ploughing at 25 cm depth)) in a field experiment. We assessed the impact of the crop residue management on crop production (three crops-winter wheat, faba bean and maize-cultivated over six cropping seasons), soil organic carbon content, nitrate ([Formula: see text]), phosphorus (P) and potassium (K) soil content and uptake by the crops. The main differences came primarily from the tillage practice and less from the restitution or removal of residues. All years and crops combined, conventional tillage resulted in a yield advantage of 3.4% as compared to reduced tillage, which can be partly explained by a lower germination rate observed under reduced tillage, especially during drier years. On average, only small differences were observed for total organic carbon (TOC) content of the soil, but reduced tillage resulted in a very clear stratification of TOC and also of P and K content as compared to conventional tillage. We observed no effect of residue management on the [Formula: see

Insect pollination and self-incompatibility in edible and/or medicinal crops in southwestern China, a global hotspot of biodiversity.

Science.gov (United States)

Ren, Zong-Xin; Wang, Hong; Bernhardt, Peter; Li, De-Zhu

2014-10-01

An increasing global demand for food, coupled with the widespread decline of pollinator diversity, remains an international concern in agriculture and genetic conservation. In particular, there are large gaps in the study of the pollination of economically important and traditionally grown species in China. Many plant species grown in China are both edible and used medicinally. The country retains extensive written records of agricultural and apicultural practices, facilitating contemporary studies of some important taxa. Here, we focus on Yunnan in southwestern China, a mega-biodiversity hotspot for medicinal/food plants. We used plant and insect taxa as model systems to understand the patterns and consequences of pollinator deficit to crops. We identified several gaps and limitations in research on the pollination ecology and breeding systems of domesticated taxa and their wild relatives in Yunnan and asked the following questions: (1) What is known about pollination systems of edible and medicinal plants in Yunnan? (2) What are the most important pollinators of Codonopsis subglobosa (Campanulaceae)? (3) How important are native pollinator species for maximizing yield in Chinese crops compared with the introduced Apis mellifera? We found that some crops that require cross-pollination now depend exclusively on hand pollination. Three domesticated crops are dependent primarily on the native but semidomesticated Apis cerana and the introduced A. mellifera. Other species of wild pollinators often play important roles for certain specialty crops (e.g., Vespa velutina pollinates Codonopsis subglobosa). We propose a more systematic and comprehensive approach to applied research in the future. © 2014 Botanical Society of America, Inc.

Imputing historical statistics, soils information, and other land-use data to crop area

Science.gov (United States)

Perry, C. R., Jr.; Willis, R. W.; Lautenschlager, L.

1982-01-01

In foreign crop condition monitoring, satellite acquired imagery is routinely used. To facilitate interpretation of this imagery, it is advantageous to have estimates of the crop types and their extent for small area units, i.e., grid cells on a map represent, at 60 deg latitude, an area nominally 25 by 25 nautical miles in size. The feasibility of imputing historical crop statistics, soils information, and other ancillary data to crop area for a province in Argentina is studied.

Multiple cold resistance loci confer the high cold tolerance adaptation of Dongxiang wild rice (Oryza rufipogon) to its high-latitude habitat.

Science.gov (United States)

Mao, Donghai; Yu, Li; Chen, Dazhou; Li, Lanying; Zhu, Yuxing; Xiao, Yeqing; Zhang, Dechun; Chen, Caiyan

2015-07-01

Dongxiang wild rice is phylogenetically close to temperate japonica and contains multiple cold resistance loci conferring its adaptation to high-latitude habitat. Understanding the nature of adaptation in wild populations will benefit crop breeding in the development of climate-resilient crop varieties. Dongxiang wild rice (DXWR), the northernmost common wild rice known, possesses a high degree of cold tolerance and can survive overwintering in its native habitat. However, to date, it is still unclear how DXWR evolved to cope with low-temperature environment, resulting in limited application of DXWR in rice breeding programs. In this study, we carried out both QTL mapping and phylogenetic analysis to discern the genetic mechanism underlying the strong cold resistance. Through a combination of interval mapping and single locus analysis in two genetic populations, at least 13 QTLs for seedling cold tolerance were identified in DXWR. A phylogenetic study using both genome-wide InDel markers and markers associated with cold tolerance loci reveals that DXWR belongs to the Or-III group, which is most closely related to cold-tolerant Japonica rice rather than to the Indica cultivars that are predominant in the habitat where DXWR grows. Our study paves the way toward an understanding of the nature of adaptation to a northern habitat in O. rufipogon. The QTLs identified in DXWR in this study will be useful for molecular breeding of cold-tolerant rice.

Comparative transcriptome profiling of two Tibetan wild barley genotypes in responses to low potassium.

Directory of Open Access Journals (Sweden)

Jianbin Zeng

Full Text Available Potassium (K deficiency is one of the major factors affecting crop growth and productivity. Development of low-K tolerant crops is an effective approach to solve the nutritional deficiency in agricultural production. Tibetan annual wild barley is rich in genetic diversity and can grow normally under poor soils, including low-K supply. However, the molecular mechanism about low K tolerance is still poorly understood. In this study, Illumina RNA-Sequencing was performed using two Tibetan wild barley genotypes differing in low K tolerance (XZ153, tolerant and XZ141, sensitive, to determine the genotypic difference in transcriptome profiling. We identified a total of 692 differentially expressed genes (DEGs in two genotypes at 6 h and 48 h after low-K treatment, including transcription factors, transporters and kinases, oxidative stress and hormone signaling related genes. Meanwhile, 294 low-K tolerant associated DEGs were assigned to transporter and antioxidant activities, stimulus response, and other gene ontology (GO, which were mainly involved in starch and sucrose metabolism, lipid metabolism and ethylene biosynthesis. Finally, a hypothetical model of low-K tolerance mechanism in XZ153 was presented. It may be concluded that wild barley accession XZ153 has a higher capability of K absorption and use efficiency than XZ141 under low K stress. A rapid response to low K stress in XZ153 is attributed to its more K uptake and accumulation in plants, resulting in higher low K tolerance. The ethylene response pathway may account for the genotypic difference in low-K tolerance.

In vitro antiviral activity of a series of wild berry fruit extracts against representatives of Picorna-, Orthomyxo- and Paramyxoviridae.

Science.gov (United States)

Nikolaeva-Glomb, Lubomira; Mukova, Luchia; Nikolova, Nadya; Badjakov, Ilian; Dincheva, Ivayla; Kondakova, Violeta; Doumanova, Lyuba; Galabov, Angel S

2014-01-01

Wild berry species are known to exhibit a wide range of pharmacological activities. They have long been traditionally applied for their antiseptic, antimicrobial, cardioprotective and antioxidant properties. The aim of the present study is to reveal the potential for selective antiviral activity of total methanol extracts, as well as that of the anthocyanins and the non-anthocyanins from the following wild berries picked in Bulgaria: strawberry (Fragaria vesca L.) and raspberry (Rubus idaeus L.) of the Rosaceae plant family, and bilberry (Vaccinium myrtillis L.) and lingonberry (Vaccinium vitis-idaea L) of the Ericaceae. The antiviral effect has been tested against viruses that are important human pathogens and for which chemotherapy and/or chemoprophylaxis is indicated, namely poliovirus type 1 (PV-1) and coxsackievirus B1 (CV-B1) from the Picornaviridae virus family, human respiratory syncytial virus A2 (HRSV-A2) from the Paramyxoviridae and influenza virus A/H3N2 of Orthomyxoviridae. Wild berry fruits are freeze-dried and ground, then total methanol extracts are prepared. Further the extracts are fractioned by solid phase extraction and the non-anthocyanin and anthocyanin fractions are eluted. The in vitro antiviral effect is examined by the virus cytopathic effect (CPE) inhibition test. The results reveal that the total extracts of all tested berry fruits inhibit the replication of CV-B1 and influenza A virus. CV-B1 is inhibited to the highest degree by both bilberry and strawberry, as well as by lingonberry total extracts, and influenza A by bilberry and strawberry extracts. Anthocyanin fractions of all wild berries strongly inhibit the replication of influenza virus A/H3N2. Given the obtained results it is concluded that wild berry species are a valuable resource of antiviral substances and the present study should serve as a basis for further detailed research on the matter.

Influence of new irrigated croplands on wild boar (Sus scrofa road kills in NW Spain

Directory of Open Access Journals (Sweden)

Colino–Rabanal, V. J.

2012-01-01

Full Text Available In recent decades, wild boar populations have increased both in number and distribution. This rise is partly related to the increase in cropland devoted to maize (Zea mays cultivation, as wild boar find food and refuge in these areas. This population expansion has led to an increase in the number of wild boar vehicle collisions (WBVCs. The goal of the present study was to evaluate a set of spatio–temporal factors that influence WBVCs related to maize crops on the Northern Spanish Plateau (the region of Castile and Leon. We compared the maize pattern with the factors related to total WBVC numbers. We observed that whereas the total occurrence of WBVCs usually increased with forest cover and speed and traffic volumes, maize areas were one of the main explanatory variables in plateau models. To avoid collisions in these areas in future, a number of mitigation measures are outlined.

The role of radiation induced mutations in crop Improvement

International Nuclear Information System (INIS)

Souframanien, J.

2017-01-01

Sudden, heritable changes in the genetic material, DNA, are known as mutations. Selection of naturally occurring mutations in wild, ancestral species helped humans in the domestication and further improvement of today's crop plants. Gregor Mendel in 1865 used several such natural mutants in his experiments with garden pea to formulate the laws of inheritance. The term mutation itself was used for the first time by Hugo de Vries in 1901 in his mutation theory. Plant breeding based on the science of genetics, as practiced over the past 100 years, exploited the available genetic variability in the primary gene pool of crop plants, and sometimes in related species. Primarily, simple selection of desirable offspring and cross breeding were the earlier methods of breeding and this utilized the occurrence of spontaneous mutations. In nature, occurrence of natural variability in the form of spontaneous mutations is extremely low (about 10 -6 ), which can be enhanced several fold (∼10 -3 ) by using ionizing radiations or chemical mutagens

Temperature dependence of bulk respiration of crop stands. Measurement and model fitting

International Nuclear Information System (INIS)

Tani, Takashi; Arai, Ryuji; Tako, Yasuhiro

2007-01-01

The objective of the present study was to examine whether the temperature dependence of respiration at a crop-stand scale could be directly represented by an Arrhenius function that was widely used for representing the temperature dependence of leaf respiration. We determined temperature dependences of bulk respiration of monospecific stands of rice and soybean within a range of the air temperature from 15 to 30degC using large closed chambers. Measured responses of respiration rates of the two stands were well fitted by the Arrhenius function (R 2 =0.99). In the existing model to assess the local radiological impact of the anthropogenic carbon-14, effects of the physical environmental factors on photosynthesis and respiration of crop stands are not taken into account for the calculation of the net amount of carbon per cultivation area in crops at harvest which is the crucial parameter for the estimation of the activity concentration of carbon-14 in crops. Our result indicates that the Arrhenius function is useful for incorporating the effect of the temperature on respiration of crop stands into the model which is expected to contribute to a more realistic estimate of the activity concentration of carbon-14 in crops. (author)

Nitrogen cycling in a 15N-fertilized bean (Phaseolus vulgaris L.) crop

International Nuclear Information System (INIS)

Victoria, R.L.; Libardi, P.L.; Reichardt, K.; Cervellini, A.

1982-01-01

To increase our understanding of the fate of applied nitrogen in Phaseolus vulgaris crops grown under tropical conditions, 15 N-labelled urea was applied to bean crops and followed for three consecutive cropping periods. Each crop received 100 kg urea-N ha - 1 and 41 kg KCl-K ha - 1 . At the end of each period we estimated each crop's recovery of the added nitrogen, the residual effects of nitrogen from the previous cropping period, the distribution of nitrogen in the soil profile, and leaching losses of nitrogen. In addition, to evaluate potential effects of added phosphorus on nitrogen cycling in this crop, beans were treated at planting with either 35 kg rock-phosphate-P, 35 kg superphosphate-P, or 0 kg P ha - 1 . Results showed that 31.2% of the nitrogen in the first crop was derived from the applied urea, which represents a nitrogen utilization efficiency of 38.5%, 6.2% of the nitrogen in the second crop was derived from fertilizer applied to the first crop, and 1.4% of the nitrogen in the third crop. (orig./AJ)

GM Crops, Organic Agriculture and Breeding for Sustainability

Directory of Open Access Journals (Sweden)

Salvatore Ceccarelli

2014-07-01

Full Text Available The ongoing debate about the use of genetically-modified (GM crops in agriculture has largely focused on food safety and genetic contamination issues. Given that the majority of GM crops have been produced to respond to the problem of crop yield reductions caused by diseases, insects and weeds, the paper argues that in those cases, the currently used GM crops are an unstable solution to the problem, because they represent such a strong selection pressure, that pests rapidly evolve resistance. Organic agriculture practices provide a more sustainable way of producing healthy food; however, the lower yields often associated with those practices, making the resultant healthy food more expensive, open the criticism that such practices will not be able to feed human populations. Evolutionary plant breeding offers the possibility of using the evolutionary potential of crops to our advantage by producing a continuous flow of varieties better adapted to organic systems, to climate change and to the ever changing spectrum of pests, without depending on chemical control.

Cover crops support ecological intensification of arable cropping systems

Science.gov (United States)

Wittwer, Raphaël A.; Dorn, Brigitte; Jossi, Werner; van der Heijden, Marcel G. A.

2017-02-01

A major challenge for agriculture is to enhance productivity with minimum impact on the environment. Several studies indicate that cover crops could replace anthropogenic inputs and enhance crop productivity. However, so far, it is unclear if cover crop effects vary between different cropping systems, and direct comparisons among major arable production systems are rare. Here we compared the short-term effects of various cover crops on crop yield, nitrogen uptake, and weed infestation in four arable production systems (conventional cropping with intensive tillage and no-tillage; organic cropping with intensive tillage and reduced tillage). We hypothesized that cover cropping effects increase with decreasing management intensity. Our study demonstrated that cover crop effects on crop yield were highest in the organic system with reduced tillage (+24%), intermediate in the organic system with tillage (+13%) and in the conventional system with no tillage (+8%) and lowest in the conventional system with tillage (+2%). Our results indicate that cover crops are essential to maintaining a certain yield level when soil tillage intensity is reduced (e.g. under conservation agriculture), or when production is converted to organic agriculture. Thus, the inclusion of cover crops provides additional opportunities to increase the yield of lower intensity production systems and contribute to ecological intensification.

Performance of fall and winter crops in a no tillage system in west Paraná State

Directory of Open Access Journals (Sweden)

Leandro Paiola Albrecht

2017-11-01

Full Text Available The long-term exploitation of natural resources by agricultural activities has resulted in the need for alternative measures to restore degraded soil. The cultivation of cover crops can generate great benefits for agricultural systems, enabling the exploitation of natural resources, including water, light and nutrients, as well as the recovery of degraded soils. This work aimed to assess the coverage rate, fresh mass and dry mass of cover crops from fall and winter as well as the floristic composition of the weeds. The work was conducted in field conditions in soil classified as eutroferric Red Oxisol in the region of the city of Palotina, Paraná State, Brazil, using a random block experimental design with four replications. The treatments consisted of seven cover cultures: wild radish, linseed, triticale, rye, rapeseed, crambe, oats and fallow. The species with the highest coverage rates and fresh mass and dry mass values were wild radish, rapeseed and crambe. In the floristic and phytosociological data, the species with the highest incidence were Amaranthus retroflexus, Commelina benghalensis L., Brachiaria plantaginea and Gnaphalium spicatum.

Identification of Abiotic Stress Protein Biomarkers by Proteomic Screening of Crop Cultivar Diversity

OpenAIRE

Barkla, Bronwyn J.

2016-01-01

Modern day agriculture practice is narrowing the genetic diversity in our food supply. This may compromise the ability to obtain high yield under extreme climactic conditions, threatening food security for a rapidly growing world population. To identify genetic diversity, tolerance mechanisms of cultivars, landraces and wild relatives of major crops can be identified and ultimately exploited for yield improvement. Quantitative proteomics allows for the identification of proteins that may cont...

The influence of life history milestones and association networks on crop-raiding behavior in male African elephants.

Directory of Open Access Journals (Sweden)

Patrick I Chiyo

Full Text Available Factors that influence learning and the spread of behavior in wild animal populations are important for understanding species responses to changing environments and for species conservation. In populations of wildlife species that come into conflict with humans by raiding cultivated crops, simple models of exposure of individual animals to crops do not entirely explain the prevalence of crop raiding behavior. We investigated the influence of life history milestones using age and association patterns on the probability of being a crop raider among wild free ranging male African elephants; we focused on males because female elephants are not known to raid crops in our study population. We examined several features of an elephant association network; network density, community structure and association based on age similarity since they are known to influence the spread of behaviors in a population. We found that older males were more likely to be raiders than younger males, that males were more likely to be raiders when their closest associates were also raiders, and that males were more likely to be raiders when their second closest associates were raiders older than them. The male association network had sparse associations, a tendency for individuals similar in age and raiding status to associate, and a strong community structure. However, raiders were randomly distributed between communities. These features of the elephant association network may limit the spread of raiding behavior and likely determine the prevalence of raiding behavior in elephant populations. Our results suggest that social learning has a major influence on the acquisition of raiding behavior in younger males whereas life history factors are important drivers of raiding behavior in older males. Further, both life-history and network patterns may influence the acquisition and spread of complex behaviors in animal populations and provide insight on managing human

The phylogenetic relationships among germplasm resources of wild ramie (boehmeria nivea l. gaud) in china based on trnl-f and its sequences

International Nuclear Information System (INIS)

Runqing, Y.; Baloch, S.U.; Lijun, L.; Dingxiang, P.

2015-01-01

Ramie (Boehmeria nivea L. Gaud) is an important fiber crop in China, which also possesses many wild species in genus Boehmeria Jacq. However, the taxonomic position of these species has not been settled. To determine the evolutionary relationships among the members of the genus Boehmeria, the combination of ITS and trnL-F sequences were used for molecular phylogenetic analyses of 31 ramie accessions (28 species and three varieties) including multiple materials collected in high-altitude regions that have not been previously reported (B. clidemioides var. diffusa, B. bicuspis and B. longispica). The ITS and trnL-F trees produced showed that Boehmeria was classified into four separate clusters. The Sect. Duretia, which has a high evolutionary level, clustered with Sects Zoilingeriana and Phyllostachys. The grouping pattern of clustering differed from traditional taxonomy and indicated possible interspecific hybridization among Boehmeria. We found that B. malabarica Wedd. var. leioclada of Sect. Boehmeria clustered into a clade with Sect. Tilocnide, providing solid support for the expansion of wild ramie core germplasm resources. The molecular results did not support the intraspecific geographic migration of Boehmeria. This study, therefore, established relationships among wild species which will help in ramie crop improvement programs. The results will be important for the collection and conservation of germplasm resources of Chinese wild ramie. (author)

Impact of crop residue management on crop production and soil chemistry after seven years of crop rotation in temperate climate, loamy soils

Directory of Open Access Journals (Sweden)

Marie-Pierre Hiel

2018-05-01

Full Text Available Society is increasingly demanding a more sustainable management of agro-ecosystems in a context of climate change and an ever growing global population. The fate of crop residues is one of the important management aspects under debate, since it represents an unneglectable quantity of organic matter which can be kept in or removed from the agro-ecosystem. The topic of residue management is not new, but the need for global conclusion on the impact of crop residue management on the agro-ecosystem linked to local pedo-climatic conditions has become apparent with an increasing amount of studies showing a diversity of conclusions. This study specifically focusses on temperate climate and loamy soil using a seven-year data set. Between 2008 and 2016, we compared four contrasting residue management strategies differing in the amount of crop residues returned to the soil (incorporation vs. exportation of residues and in the type of tillage (reduced tillage (10 cm depth vs. conventional tillage (ploughing at 25 cm depth in a field experiment. We assessed the impact of the crop residue management on crop production (three crops—winter wheat, faba bean and maize—cultivated over six cropping seasons, soil organic carbon content, nitrate ( ${\\mathrm{NO}}_{3}^{-}$ NO 3 − , phosphorus (P and potassium (K soil content and uptake by the crops. The main differences came primarily from the tillage practice and less from the restitution or removal of residues. All years and crops combined, conventional tillage resulted in a yield advantage of 3.4% as compared to reduced tillage, which can be partly explained by a lower germination rate observed under reduced tillage, especially during drier years. On average, only small differences were observed for total organic carbon (TOC content of the soil, but reduced tillage resulted in a very clear stratification of TOC and also of P and K content as compared to conventional tillage. We observed no effect of residue

New insight into the history of domesticated apple: secondary contribution of the European wild apple to the genome of cultivated varieties.

Directory of Open Access Journals (Sweden)

Amandine Cornille

Full Text Available The apple is the most common and culturally important fruit crop of temperate areas. The elucidation of its origin and domestication history is therefore of great interest. The wild Central Asian species Malus sieversii has previously been identified as the main contributor to the genome of the cultivated apple (Malus domestica, on the basis of morphological, molecular, and historical evidence. The possible contribution of other wild species present along the Silk Route running from Asia to Western Europe remains a matter of debate, particularly with respect to the contribution of the European wild apple. We used microsatellite markers and an unprecedented large sampling of five Malus species throughout Eurasia (839 accessions from China to Spain to show that multiple species have contributed to the genetic makeup of domesticated apples. The wild European crabapple M. sylvestris, in particular, was a major secondary contributor. Bidirectional gene flow between the domesticated apple and the European crabapple resulted in the current M. domestica being genetically more closely related to this species than to its Central Asian progenitor, M. sieversii. We found no evidence of a domestication bottleneck or clonal population structure in apples, despite the use of vegetative propagation by grafting. We show that the evolution of domesticated apples occurred over a long time period and involved more than one wild species. Our results support the view that self-incompatibility, a long lifespan, and cultural practices such as selection from open-pollinated seeds have facilitated introgression from wild relatives and the maintenance of genetic variation during domestication. This combination of processes may account for the diversification of several long-lived perennial crops, yielding domestication patterns different from those observed for annual species.

New Insight into the History of Domesticated Apple: Secondary Contribution of the European Wild Apple to the Genome of Cultivated Varieties

Science.gov (United States)

Cornille, Amandine; Gladieux, Pierre; Smulders, Marinus J. M.; Roldán-Ruiz, Isabel; Laurens, François; Le Cam, Bruno; Nersesyan, Anush; Clavel, Joanne; Olonova, Marina; Feugey, Laurence; Gabrielyan, Ivan; Zhang, Xiu-Guo; Tenaillon, Maud I.; Giraud, Tatiana

2012-01-01

The apple is the most common and culturally important fruit crop of temperate areas. The elucidation of its origin and domestication history is therefore of great interest. The wild Central Asian species Malus sieversii has previously been identified as the main contributor to the genome of the cultivated apple (Malus domestica), on the basis of morphological, molecular, and historical evidence. The possible contribution of other wild species present along the Silk Route running from Asia to Western Europe remains a matter of debate, particularly with respect to the contribution of the European wild apple. We used microsatellite markers and an unprecedented large sampling of five Malus species throughout Eurasia (839 accessions from China to Spain) to show that multiple species have contributed to the genetic makeup of domesticated apples. The wild European crabapple M. sylvestris, in particular, was a major secondary contributor. Bidirectional gene flow between the domesticated apple and the European crabapple resulted in the current M. domestica being genetically more closely related to this species than to its Central Asian progenitor, M. sieversii. We found no evidence of a domestication bottleneck or clonal population structure in apples, despite the use of vegetative propagation by grafting. We show that the evolution of domesticated apples occurred over a long time period and involved more than one wild species. Our results support the view that self-incompatibility, a long lifespan, and cultural practices such as selection from open-pollinated seeds have facilitated introgression from wild relatives and the maintenance of genetic variation during domestication. This combination of processes may account for the diversification of several long-lived perennial crops, yielding domestication patterns different from those observed for annual species. PMID:22589740

The potential for energy production from crop residues in Zimbabwe

Energy Technology Data Exchange (ETDEWEB)

Jingura, R.M.; Matengaifa, R. [School of Engineering Sciences and Technology, Chinhoyi University of Technology, P. Bag 7724, Chinhoyi (Zimbabwe)

2008-12-15

There is increasing interest in Zimbabwe in the use of renewable energy sources as a means of meeting the country's energy requirements. Biomass provides 47% of the gross energy consumption in Zimbabwe. Energy can be derived from various forms of biomass using various available conversion technologies. Crop residues constitute a large part of the biomass available from the country's agriculture-based economy. The potential for energy production of crop residues is examined using data such as estimates of the quantities of the residues and their energy content. The major crops considered are maize, sugarcane, cotton, soyabeans, groundnuts, wheat, sorghum, fruits and forestry plantations. Quantities of residues are estimated from crop yields by using conversion coefficients for the various crops. Long-term crop yields data from 1970 to 1999 were used. Total annual residue yields for crops, fruits and forestry plantations are 7.805 Mt, 378 kt and 3.05 Mt, respectively. The crops, fruits and forestry residues have energy potential of 81.5, 4.9 and 44.3 PJ per year, respectively. This represents about 44% of the gross energy consumption in Zimbabwe. The need to balance use of crop residues for both energy purposes and other purposes such as animal feeding and soil fertility improvement is also highlighted. (author)

A mixed-model QTL analysis for salt tolerance in seedlings of crop-wild hybrids of lettuce

NARCIS (Netherlands)

Wei, Z.; Julkowska, M.M.; Laloë, J.O.; Hartman, Y.; de Boer, G.J.; Michelmore, R.W.; van Tienderen, P.H.; Testerink, C.; Schranz, M.E.

2014-01-01

Cultivated lettuce is more sensitive to salinity stress than its wild progenitor species potentially due to differences in root architecture and/or differential uptake and accumulation of sodium. We have identified quantitative trait locis (QTLs) associated with salt-induced changes in root system

Adapting crop rotations to climate change in regional impact modelling assessments.

Science.gov (United States)

Teixeira, Edmar I; de Ruiter, John; Ausseil, Anne-Gaelle; Daigneault, Adam; Johnstone, Paul; Holmes, Allister; Tait, Andrew; Ewert, Frank

2018-03-01

The environmental and economic sustainability of future cropping systems depends on adaptation to climate change. Adaptation studies commonly rely on agricultural systems models to integrate multiple components of production systems such as crops, weather, soil and farmers' management decisions. Previous adaptation studies have mostly focused on isolated monocultures. However, in many agricultural regions worldwide, multi-crop rotations better represent local production systems. It is unclear how adaptation interventions influence crops grown in sequences. We develop a catchment-scale assessment to investigate the effects of tactical adaptations (choice of genotype and sowing date) on yield and underlying crop-soil factors of rotations. Based on locally surveyed data, a silage-maize followed by catch-crop-wheat rotation was simulated with the APSIM model for the RCP 8.5 emission scenario, two time periods (1985-2004 and 2080-2100) and six climate models across the Kaituna catchment in New Zealand. Results showed that direction and magnitude of climate change impacts, and the response to adaptation, varied spatially and were affected by rotation carryover effects due to agronomical (e.g. timing of sowing and harvesting) and soil (e.g. residual nitrogen, N) aspects. For example, by adapting maize to early-sowing dates under a warmer climate, there was an advance in catch crop establishment which enhanced residual soil N uptake. This dynamics, however, differed with local environment and choice of short- or long-cycle maize genotypes. Adaptation was insufficient to neutralize rotation yield losses in lowlands but consistently enhanced yield gains in highlands, where other constraints limited arable cropping. The positive responses to adaptation were mainly due to increases in solar radiation interception across the entire growth season. These results provide deeper insights on the dynamics of climate change impacts for crop rotation systems. Such knowledge can be used

The Potential Role of Neglected and Underutilised Crop Species as Future Crops under Water Scarce Conditions in Sub-Saharan Africa

Science.gov (United States)

Chivenge, Pauline; Mabhaudhi, Tafadzwanashe; Modi, Albert T.; Mafongoya, Paramu

2015-01-01

Modern agricultural systems that promote cultivation of a very limited number of crop species have relegated indigenous crops to the status of neglected and underutilised crop species (NUCS). The complex interactions of water scarcity associated with climate change and variability in sub-Saharan Africa (SSA), and population pressure require innovative strategies to address food insecurity and undernourishment. Current research efforts have identified NUCS as having potential to reduce food and nutrition insecurity, particularly for resource poor households in SSA. This is because of their adaptability to low input agricultural systems and nutritional composition. However, what is required to promote NUCS is scientific research including agronomy, breeding, post-harvest handling and value addition, and linking farmers to markets. Among the essential knowledge base is reliable information about water utilisation by NUCS with potential for commercialisation. This commentary identifies and characterises NUCS with agronomic potential in SSA, especially in the semi-arid areas taking into consideration inter alia: (i) what can grow under water-scarce conditions, (ii) water requirements, and (iii) water productivity. Several representative leafy vegetables, tuber crops, cereal crops and grain legumes were identified as fitting the NUCS category. Agro-biodiversity remains essential for sustainable agriculture. PMID:26016431

The Potential Role of Neglected and Underutilised Crop Species as Future Crops under Water Scarce Conditions in Sub-Saharan Africa

Directory of Open Access Journals (Sweden)

Pauline Chivenge

2015-05-01

Full Text Available Modern agricultural systems that promote cultivation of a very limited number of crop species have relegated indigenous crops to the status of neglected and underutilised crop species (NUCS. The complex interactions of water scarcity associated with climate change and variability in sub-Saharan Africa (SSA, and population pressure require innovative strategies to address food insecurity and undernourishment. Current research efforts have identified NUCS as having potential to reduce food and nutrition insecurity, particularly for resource poor households in SSA. This is because of their adaptability to low input agricultural systems and nutritional composition. However, what is required to promote NUCS is scientific research including agronomy, breeding, post-harvest handling and value addition, and linking farmers to markets. Among the essential knowledge base is reliable information about water utilisation by NUCS with potential for commercialisation. This commentary identifies and characterises NUCS with agronomic potential in SSA, especially in the semi-arid areas taking into consideration inter alia: (i what can grow under water-scarce conditions, (ii water requirements, and (iii water productivity. Several representative leafy vegetables, tuber crops, cereal crops and grain legumes were identified as fitting the NUCS category. Agro-biodiversity remains essential for sustainable agriculture.

The California Biomass Crop Adoption Model estimates biofuel feedstock crop production across diverse agro-ecological zones within the state, under different future climates

Science.gov (United States)

Kaffka, S.; Jenner, M.; Bucaram, S.; George, N.

2012-12-01

Both regulators and businesses need realistic estimates for the potential production of biomass feedstocks for biofuels and bioproducts. This includes the need to understand how climate change will affect mid-tem and longer-term crop performance and relative advantage. The California Biomass Crop Adoption Model is a partial mathematical programming optimization model that estimates the profit level needed for new crop adoption, and the crop(s) displaced when a biomass feedstock crop is added to the state's diverse set of cropping systems, in diverse regions of the state. Both yield and crop price, as elements of profit, can be varied. Crop adoption is tested against current farmer preferences derived from analysis of 10 years crop production data for all crops produced in California, collected by the California Department of Pesticide Regulation. Analysis of this extensive data set resulted in 45 distinctive, representative farming systems distributed across the state's diverse agro-ecological regions. Estimated yields and water use are derived from field trials combined with crop simulation, reported elsewhere. Crop simulation is carried out under different weather and climate assumptions. Besides crop adoption and displacement, crop resource use is also accounted, derived from partial budgets used for each crop's cost of production. Systematically increasing biofuel crop price identified areas of the state where different types of crops were most likely to be adopted. Oilseed crops like canola that can be used for biodiesel production had the greatest potential to be grown in the Sacramento Valley and other northern regions, while sugar beets (for ethanol) had the greatest potential in the northern San Joaquin Valley region, and sweet sorghum in the southern San Joaquin Valley. Up to approximately 10% of existing annual cropland in California was available for new crop adoption. New crops are adopted if the entire cropping system becomes more profitable. In

Glyphosate sustainability in South American cropping systems.

Science.gov (United States)

Christoffoleti, Pedro J; Galli, Antonio J B; Carvalho, Saul J P; Moreira, Murilo S; Nicolai, Marcelo; Foloni, Luiz L; Martins, Bianca A B; Ribeiro, Daniela N

2008-04-01

South America represents about 12% of the global land area, and Brazil roughly corresponds to 47% of that. The major sustainable agricultural system in South America is based on a no-tillage cropping system, which is a worldwide adopted agricultural conservation system. Societal benefits of conservation systems in agriculture include greater use of conservation tillage, which reduces soil erosion and associated loading of pesticides, nutrients and sediments into the environment. However, overreliance on glyphosate and simpler cropping systems has resulted in the selection of tolerant weed species through weed shifts (WSs) and evolution of herbicide-resistant weed (HRW) biotypes to glyphosate. It is a challenge in South America to design herbicide- and non-herbicide-based strategies that effectively delay and/or manage evolution of HRWs and WSs to weeds tolerant to glyphosate in cropping systems based on recurrent glyphosate application, such as those used with glyphosate-resistant soybeans. The objectives of this paper are (i) to provide an overview of some factors that influence WSs and HRWs to glyphosate in South America, especially in Brazil, Argentina and Paraguay soybean cropped areas; (ii) to discuss the viability of using crop rotation and/or cover crops that might be integrated with forage crops in an economically and environmentally sustainable system; and (iii) to summarize the results of a survey of the perceptions of Brazilian farmers to problems with WSs and HRWs to glyphosate, and the level of adoption of good agricultural practices in order to prevent or manage it. Copyright (c) 2008 Society of Chemical Industry.

Spider fauna of semiarid eastern Colorado agroecosystems: diversity, abundance, and effects of crop intensification.

Science.gov (United States)

Kerzicnik, Lauren M; Peairs, Frank B; Cushing, Paula E; Draney, Michael L; Merrill, Scott C

2013-02-01

Spiders are critical predators in agroecosystems. Crop management practices can influence predator density and diversity, which, in turn, can influence pest management strategies. Crop intensification is a sustainable agricultural technique that can enhance crop production although optimizing soil moisture. To date, there is no information on how crop intensification affects natural enemy populations, particularly spiders. This study had two objectives: to characterize the abundance and diversity of spiders in eastern Colorado agroecosystems, and to test the hypothesis that spider diversity and density would be higher in wheat (Triticum aestivum L.) in crop-intensified rotations compared with wheat in conventional rotations. We collected spiders through pitfall, vacuum, and lookdown sampling from 2002 to 2007 to test these objectives. Over 11,000 spiders in 19 families from 119 species were captured from all sampling techniques. Interestingly, the hunting spider guild represented 89% of the spider fauna captured from all sites with the families Gnaphosidae and Lycosidae representing 75% of these spiders. Compared with European agroecosystems, these agroecosystems had greater diversity, which can be beneficial for the biological control of pests. Overall, spider densities were low in these semiarid cropping systems, and crop intensification effects on spider densities were not evident at this scale.

PRESENCE OF TRICHINELLA BRITOVI IN WILD BOAR IN THE MARCHE REGION REGULARLY SLAUGHTERED

Directory of Open Access Journals (Sweden)

L. Di Giacomo

2011-01-01

Full Text Available Trichinellosis is a zoonotic disease caused by a nematode belonging to the genus Trichinella. Numerous mammal species as well as birds and crocodiles can harbour the parasite worldwide, but the wild cycle is mainly maintained by wild carnivores. Human represents only a possible host and the parasite is exclusively transmitted through consumption of undercooked or raw meat. In Italy, pork, wild boar meat and horse meat are the main sources for human infection. This article describe a presence of Trichinella britovi in wild boar in the Marche region regularly slaughtered. These case confirms the occurrence of Trichinella britovi in wild boar and the important role of slaughterhouse in epidemiological surveillance of zoonotic diseases.

Variability of chloroplast DNA and nuclear ribosomal DNA in cassava (Manihot esculenta Crantz) and its wild relatives.

Science.gov (United States)

Fregene, M A; Vargas, J; Ikea, J; Angel, F; Tohme, J; Asiedu, R A; Akoroda, M O; Roca, W M

1994-11-01

Chloroplast DNA (cp) and nuclear ribosomal DNA (rDNA) variation was investigated in 45 accessions of cultivated and wild Manihot species. Ten independent mutations, 8 point mutations and 2 length mutations were identified, using eight restriction enzymes and 12 heterologous cpDNA probes from mungbean. Restriction fragment length polymorphism analysis defined nine distinct chloroplast types, three of which were found among the cultivated accessions and six among the wild species. Cladistic analysis of the cpDNA data using parsimony yielded a hypothetical phylogeny of lineages among the cpDNAs of cassava and its wild relatives that is congruent with morphological evolutionary differentiation in the genus. The results of our survey of cpDNA, together with rDNA restriction site change at the intergenic spacer region and rDNA repeat unit length variation (using rDNA cloned fragments from taro as probe), suggest that cassava might have arisen from the domestication of wild tuberous accessions of some Manihot species, followed by intensive selection. M. esculenta subspp flabellifolia is probably a wild progenitor. Introgressive hybridization with wild forms and pressures to adapt to the widely varying climates and topography in which cassava is found might have enhanced the crop's present day variability.

Beyond the single gene: How epistasis and gene-by-environment effects influence crop domestication.

Science.gov (United States)

Doust, Andrew N; Lukens, Lewis; Olsen, Kenneth M; Mauro-Herrera, Margarita; Meyer, Ann; Rogers, Kimberly

2014-04-29

Domestication is a multifaceted evolutionary process, involving changes in individual genes, genetic interactions, and emergent phenotypes. There has been extensive discussion of the phenotypic characteristics of plant domestication, and recent research has started to identify the specific genes and mutational mechanisms that control domestication traits. However, there is an apparent disconnect between the simple genetic architecture described for many crop domestication traits, which should facilitate rapid phenotypic change under selection, and the slow rate of change reported from the archeobotanical record. A possible explanation involves the middle ground between individual genetic changes and their expression during development, where gene-by-gene (epistatic) and gene-by-environment interactions can modify the expression of phenotypes and opportunities for selection. These aspects of genetic architecture have the potential to significantly slow the speed of phenotypic evolution during crop domestication and improvement. Here we examine whether epistatic and gene-by-environment interactions have shaped how domestication traits have evolved. We review available evidence from the literature, and we analyze two domestication-related traits, shattering and flowering time, in a mapping population derived from a cross between domesticated foxtail millet and its wild progenitor. We find that compared with wild progenitor alleles, those favored during domestication often have large phenotypic effects and are relatively insensitive to genetic background and environmental effects. Consistent selection should thus be able to rapidly change traits during domestication. We conclude that if phenotypic evolution was slow during crop domestication, this is more likely due to cultural or historical factors than epistatic or environmental constraints.

Alternative crops

International Nuclear Information System (INIS)

Andreasen, L.M.; Boon, A.D.

1992-01-01

Surplus cereal production in the EEC and decreasing product prices, mainly for cereals, has prompted considerable interest for new earnings in arable farming. The objective was to examine whether suggested new crops (fibre, oil, medicinal and alternative grains crops) could be considered as real alternatives. Whether a specific crop can compete economically with cereals and whether there is a market demand for the crop is analyzed. The described possibilities will result in ca. 50,000 hectares of new crops. It is expected that they would not immediately provide increased earnings, but in the long run expected price developments are more positive than for cereals. The area for new crops will not solve the current surplus cereal problem as the area used for new crops is only 3% of that used for cereals. Preconditions for many new crops is further research activities and development work as well as the establishment of processing units and organizational initiatives. Presumably, it is stated, there will then be a basis for a profitable production of new crops for some farmers. (AB) (47 refs.)

Spider assemblages associated with different crop stages of irrigated rice agroecosystems from eastern Uruguay.

Science.gov (United States)

Bao, Leticia; Ginella, Juaquín; Cadenazzi, Mónica; Castiglioni, Enrique A; Martínez, Sebastián; Casales, Luis; Caraballo, María P; Laborda, Álvaro; Simo, Miguel

2018-01-01

The rice crop and associated ecosystems constitute a rich mosaic of habitats that preserve a rich biological diversity. Spiders are an abundant and successful group of natural predators that are considered efficient in the biocontrol of the major insect pests in agroecosystems. Spider diversity in different stages of the rice crop growth from eastern Uruguay was analysed. Field study was developed on six rice farms with rotation system with pasture, installed during intercropping stage as cover crop. Six rice crops distributed in three locations were sampled with pitfall and entomological vaccum suction machine. Sixteen families, representing six guilds, were collected. Lycosidae, Linyphiidae, Anyphaenidae and Tetragnathidae were the most abundant families (26%, 25%, 20% and 12%, respectively) and comprised more than 80% of total abundance. Other hunters (29%), sheet web weavers (25%) and ground hunters (24%) were the most abundant guilds. Species composition along different crop stages was significantly different according to the ANOSIM test. The results showed higher spider abundance and diversity along the crop and intercrop stages. This study represents the first contribution to the knowledge of spider diversity associated with rice agroecosystem in the country.

Assessment of exchange of crop in view of change climate and International Treaties.

Science.gov (United States)

Singh, Anil Kumar; Pedapati, Annitaa; Manibhushan

2015-01-01

To meet the UN millennium development goal of reducing the number of hungry people to half by 2015, there is utmost need to breed potentially high yielding varieties to match up the requirement along with corrective measures to bridge the gap between the potential yield and yield harvested by farmers. The scenario has changed from free access to limited access of plant genetic resources (PGR) and therefore, it is important to understand the issues in view of national and international agreements, intellectual property rights (IPR'S), climate change conditions and expanded scope of breeders and farmers rights for developed genotypes. For efficient management of PGR, developing countries need to understand the implications of PGR related IPR'S as stronger IPR'S in developed countries could have harmful effects by reduced exchange of genetic resources from developed countries. Keeping in view the existing realities every possible effort should be taken for enrichment of crop gene pool by introducing them from each and every corner of the globe. Keeping these facts in view this paper describes the priorities for introduction and exchange of important crop groups/crops along with some of their potential wild and weedy relatives and thrust has been given to generate awareness among the workers engaged in the breeders/crop improvement works. Information provided in this presentation can be utilized by prospective crop improvement works to plan to meet out the nationalfood security.

Evaluation of oilseed crop rotations with agro-environmental indicators

Directory of Open Access Journals (Sweden)

Pouzet André

2003-05-01

Full Text Available The European Common Agricultural Policy is shifting an increasing part of the subsidies to eco-conditionality. Henceforth, it becomes essential to evaluate the environmental effect of agricultural practices, and more generally performances of cropping and farming systems, in order to design and to develop more sustainable systems. This assessment is being implemented for the main cropping systems of some French regions, using environmental indicators. Eleven exposure indicators were chosen in order to represent a wide range of specific sustainability objectives dealing with water, soil, air, non-renewable resources, biodiversity, and landscape. The results present the sustainability assessment for the crop rotations of Champagne Berrichonne region in the Centre of France.

Comparative proteomic analysis of aluminum tolerance in tibetan wild and cultivated barleys.

Directory of Open Access Journals (Sweden)

Huaxin Dai

Full Text Available Aluminum (Al toxicity is a major limiting factor for plant production in acid soils. Wild barley germplasm is rich in genetic diversity and may provide elite genes for crop Al tolerance improvement. The hydroponic-experiments were performed to compare proteomic and transcriptional characteristics of two contrasting Tibetan wild barley genotypes Al- resistant/tolerant XZ16 and Al-sensitive XZ61 as well as Al-resistant cv. Dayton. Results showed that XZ16 had less Al uptake and translocation than XZ61 and Dayton under Al stress. Thirty-five Al-tolerance/resistance-associated proteins were identified and categorized mainly in metabolism, energy, cell growth/division, protein biosynthesis, protein destination/storage, transporter, signal transduction, disease/defense, etc. Among them, 30 were mapped on barley genome, with 16 proteins being exclusively up-regulated by Al stress in XZ16, including 4 proteins (S-adenosylmethionine-synthase 3, ATP synthase beta subunit, triosephosphate isomerase, Bp2A specifically expressed in XZ16 but not Dayton. The findings highlighted the significance of specific-proteins associated with Al tolerance, and verified Tibetan wild barley as a novel genetic resource for Al tolerance.

Biological and microbiological attributes in Oxisol managed with cover crops

Directory of Open Access Journals (Sweden)

Rodrigo Ferreira da Silva

2017-05-01

Full Text Available The inclusion of winter cover crops and fertilization with nitrogen to the soil can have an effect on their biological and microbiological attributes. The aim of this study was to evaluate biological and microbiological attributes in soil under different winter cover crops and nitrogen doses. The experiment was conducted at the Frederico Westphalen-RS campus of the Federal University of Santa Maria (UFSM in a Rhodic Hapludox soil. The experimental design was a randomized block in factorial arrangement (2 x 10: 10 winter cover crops systems (Fallow [control], black oats, white oats, ryegrass, forage turnip, vetch, white lupine; black oat + forage turnip; black oat + vetch and black oat + vetch + fodder turnip, and two nitrogen rates in the form of urea applied in successive crops of beans common and maize, with four replications. We assessed the biological attributes (Margalef’s richness, Simpson’s dominance, Shannon’s diversity and abundance of organisms and microbiological (carbon and nitrogen microbial biomass, basal respiration, metabolic quotient and microbial quotient of the soil. The fallow with wild species and white lupine showed greater Simpson’s dominance and abundance of organisms due to the increase in the number of individuals of the order Collembola. Vetch improved the biological attributes of the soil with increase in Collembola abundance and diversity of organisms of soil fauna. The application of nitrogen favored the microbial biomass carbon and reduced the metabolic quotient.

Influence of crop management practices on bean foliage arthropods.

Science.gov (United States)

Pereira, J L; Picanço, M C; Pereira, E J G; Silva, A A; Jakelaitis, A; Pereira, R R; Xavier, V M

2010-12-01

Crop management practices can affect the population of phytophagous pest species and beneficial arthropods with consequences for integrated pest management. In this study, we determined the effect of no-tillage and crop residue management on the arthropod community associated with the canopy of common beans (Phaseolus vulgaris L.). Abundance and species composition of herbivorous, detritivorous, predaceous and parasitoid arthropods were recorded during the growing seasons of 2003 and 2004 in Coimbra County, Minas Gerais State, Brazil. Arthropod diversity and guild composition were similar among crop management systems, but their abundance was higher under no-tillage relative to conventional cultivation and where residues from the preceding crop were maintained in the field. Thirty-four arthropod species were recorded, and those most representative of the impact of the crop management practices were Hypogastrura springtails, Empoasca kraemeri and Circulifer leafhoppers, and Solenopsis ants. The infestation levels of major insect-pests, especially leafhoppers (Hemiptera: Cicadellidae), was on average seven-fold lower under no-tillage with retention of crop residues relative to the conventional system with removal of residues, whereas the abundance of predatory ants (Hymenoptera: Formicidae) and springtails (Collembola: Hypogastruridae) were, respectively, about seven- and 15-fold higher in that treatment. Importantly, a significant trophic interaction among crop residues, detritivores, predators and herbivores was observed. Plots managed with no-tillage and retention of crop residues had the highest bean yield, while those with conventional cultivation and removal of the crop residues yielded significantly less beans. This research shows that cropping systems that include zero tillage and crop residue retention can reduce infestation by foliar insect-pests and increase abundance of predators and detritivores, thus having direct consequences for insect pest management.

BLM Colorado Wild and Scenic Rivers Line Features (Suitable/Eligible)

Data.gov (United States)

Department of the Interior — KMZ File Format –- This line feature class represents the segments identified as eligible or suitable for Wild and Scenic River designation. These segments are part...

Does pathogen spillover from commercially reared bumble bees threaten wild pollinators?

Directory of Open Access Journals (Sweden)

Michael C Otterstatter

Full Text Available The conservation of insect pollinators is drawing attention because of reported declines in bee species and the 'ecosystem services' they provide. This issue has been brought to a head by recent devastating losses of honey bees throughout North America (so called, 'Colony Collapse Disorder'; yet, we still have little understanding of the cause(s of bee declines. Wild bumble bees (Bombus spp. have also suffered serious declines and circumstantial evidence suggests that pathogen 'spillover' from commercially reared bumble bees, which are used extensively to pollinate greenhouse crops, is a possible cause. We constructed a spatially explicit model of pathogen spillover in bumble bees and, using laboratory experiments and the literature, estimated parameter values for the spillover of Crithidia bombi, a destructive pathogen commonly found in commercial Bombus. We also monitored wild bumble bee populations near greenhouses for evidence of pathogen spillover, and compared the fit of our model to patterns of C. bombi infection observed in the field. Our model predicts that, during the first three months of spillover, transmission from commercial hives would infect up to 20% of wild bumble bees within 2 km of the greenhouse. However, a travelling wave of disease is predicted to form suddenly, infecting up to 35-100% of wild Bombus, and spread away from the greenhouse at a rate of 2 km/wk. In the field, although we did not observe a large epizootic wave of infection, the prevalences of C. bombi near greenhouses were consistent with our model. Indeed, we found that spillover has allowed C. bombi to invade several wild bumble bee species near greenhouses. Given the available evidence, it is likely that pathogen spillover from commercial bees is contributing to the ongoing decline of wild Bombus in North America. Improved management of domestic bees, for example by reducing their parasite loads and their overlap with wild congeners, could diminish or even

Edible wild plant use in the Faroe Islands and Iceland

Directory of Open Access Journals (Sweden)

Ingvar Svanberg

2012-11-01

Full Text Available This paper reviews the use of wild edible plants in the Faroe Islands and Iceland from the times of the first settlement of Norse people in the Viking age until today, with a special emphasis on the 18th, 19th and 20th centuries. Animal products have been an important source of nutrients for the islanders of northern Atlantic. Cultivation of cereals on the other hand has played a minor role, and had already been abandoned by late medieval times in Iceland and by the early 20th century on the Faroes. Crops such as potatoes, turnips and other roots were only grown in the small patches of cultivated soil. Wild plants have therefore been of some importance for the Faroese people and the Icelanders; in the last centuries especially for the rural poor and during times of recessions. The native Angelica archangelica L. was gathered in the wild and also cultivated in gardens for centuries. A few species have been part of the regular food staple. Some plants are still gathered and made into food products by small companies, especially in Iceland. In the Faroes, the economic aspect of edible wild plant taxa is mostly of historical interest, although a few products of A. archangelica are sometimes available. Two taxa have been exploited as regular food exclusively in Iceland: Cetraria islandica (L. Arch. and Elymus arenarius L. Icelanders have used C. islandica from the early settlement days and continue to do so today, E. arenarius became obsolete as a food plant a century ago.

Non-bee insects are important contributors to global crop pollination.

Science.gov (United States)

Rader, Romina; Bartomeus, Ignasi; Garibaldi, Lucas A; Garratt, Michael P D; Howlett, Brad G; Winfree, Rachael; Cunningham, Saul A; Mayfield, Margaret M; Arthur, Anthony D; Andersson, Georg K S; Bommarco, Riccardo; Brittain, Claire; Carvalheiro, Luísa G; Chacoff, Natacha P; Entling, Martin H; Foully, Benjamin; Freitas, Breno M; Gemmill-Herren, Barbara; Ghazoul, Jaboury; Griffin, Sean R; Gross, Caroline L; Herbertsson, Lina; Herzog, Felix; Hipólito, Juliana; Jaggar, Sue; Jauker, Frank; Klein, Alexandra-Maria; Kleijn, David; Krishnan, Smitha; Lemos, Camila Q; Lindström, Sandra A M; Mandelik, Yael; Monteiro, Victor M; Nelson, Warrick; Nilsson, Lovisa; Pattemore, David E; Pereira, Natália de O; Pisanty, Gideon; Potts, Simon G; Reemer, Menno; Rundlöf, Maj; Sheffield, Cory S; Scheper, Jeroen; Schüepp, Christof; Smith, Henrik G; Stanley, Dara A; Stout, Jane C; Szentgyörgyi, Hajnalka; Taki, Hisatomo; Vergara, Carlos H; Viana, Blandina F; Woyciechowski, Michal

2016-01-05

Wild and managed bees are well documented as effective pollinators of global crops of economic importance. However, the contributions by pollinators other than bees have been little explored despite their potential to contribute to crop production and stability in the face of environmental change. Non-bee pollinators include flies, beetles, moths, butterflies, wasps, ants, birds, and bats, among others. Here we focus on non-bee insects and synthesize 39 field studies from five continents that directly measured the crop pollination services provided by non-bees, honey bees, and other bees to compare the relative contributions of these taxa. Non-bees performed 25-50% of the total number of flower visits. Although non-bees were less effective pollinators than bees per flower visit, they made more visits; thus these two factors compensated for each other, resulting in pollination services rendered by non-bees that were similar to those provided by bees. In the subset of studies that measured fruit set, fruit set increased with non-bee insect visits independently of bee visitation rates, indicating that non-bee insects provide a unique benefit that is not provided by bees. We also show that non-bee insects are not as reliant as bees on the presence of remnant natural or seminatural habitat in the surrounding landscape. These results strongly suggest that non-bee insect pollinators play a significant role in global crop production and respond differently than bees to landscape structure, probably making their crop pollination services more robust to changes in land use. Non-bee insects provide a valuable service and provide potential insurance against bee population declines.

Crop immunity against viruses: outcomes and future challenges

Directory of Open Access Journals (Sweden)

Valerie eNicaise

2014-11-01

Full Text Available Viruses cause epidemics on all major cultures of agronomic importance, representing a serious threat to global food security. As strict intracellular pathogens, they cannot be controlled chemically and prophylactic measures consist mainly in the destruction of infected plants and excessive pesticide applications to limit the population of vector organisms. A powerful alternative frequently employed in agriculture relies on the use of crop genetic resistances, approach that depends on mechanisms governing plant-virus interactions. Hence, knowledge related to the molecular bases of viral infections and crop resistances is key to face viral attacks in fields. Over the past 80 years, great advances have been made on our understanding of plant immunity against viruses. Although most of the known natural resistance genes have long been dominant R genes (encoding NBS-LRR proteins, a vast number of crop recessive resistance genes were cloned in the last decade, emphasizing another evolutive strategy to block viruses. In addition, the discovery of RNA interference pathways highlighted a very efficient antiviral system targeting the infectious agent at the nucleic acid level. Insidiously, plant viruses evolve and often acquire the ability to overcome the resistances employed by breeders. The development of efficient and durable resistances able to withstand the extreme genetic plasticity of viruses therefore represents a major challenge for the coming years. This review aims at describing some of the most devastating diseases caused by viruses on crops and summarizes current knowledge about plant-virus interactions, focusing on resistance mechanisms that prevent or limit viral infection in plants. In addition, I will discuss the current outcomes of the actions employed to control viral diseases in fields and the future investigations that need to be undertaken to develop sustainable broad-spectrum crop resistances against viruses.

Origins of domestication and polyploidy in oca (Oxalis tuberosa; Oxalidaceae). 3. AFLP data of oca and four wild, tuber-bearing taxa.

Science.gov (United States)

Emshwiller, Eve; Theim, Terra; Grau, Alfredo; Nina, Victor; Terrazas, Franz

2009-10-01

Many crops are polyploids, and it can be challenging to untangle the often complicated history of their origins of domestication and origins of polyploidy. To complement other studies of the origins of polyploidy of the octoploid tuber crop oca (Oxalis tuberosa) that used DNA sequence data and phylogenetic methods, we here compared AFLP data for oca with four wild, tuber-bearing Oxalis taxa found in different regions of the central Andes. Results confirmed the divergence of two use-categories of cultivated oca that indigenous farmers use for different purposes, suggesting the possibility that they might have had separate origins of domestication. Despite previous results with nuclear-encoded, chloroplast-expressed glutamine synthetase suggesting that O. picchensis might be a progenitor of oca, AFLP data of this species, as well as different populations of wild, tuber-bearing Oxalis found in Lima Department, Peru, were relatively divergent from O. tuberosa. Results from all analytical methods suggested that the unnamed wild, tuber-bearing Oxalis found in Bolivia and O. chicligastensis in NW Argentina are the best candidates as the genome donors for polyploid O. tuberosa, but the results were somewhat equivocal about which of these two taxa is the more strongly supported as oca's progenitor.

Optimising an integrated crop-livestock farm using risk programming

Directory of Open Access Journals (Sweden)

SE Visagie

2004-06-01

Full Text Available Numerous studies have analysed farm planning decisions focusing on producer risk preferences. Few studies have focussed on the farm planning decisions in an integrated croplivestock farm context. Income variability and means of managing risk continues to receive much attention in farm planning research. Different risk programming models have attempted to focus on minimising the income variability of farm activities. This study attempts to identify the optimal mix of crops and the number of animals the farm needs to keep in the presence of crop production risk for a range of risk levels. A mixed integer linear programming model was developed to model the decision environment faced by an integrated crop-livestock farmer. The deviation of income from the expected value was used as a measure of risk. A case study is presented with representative data from a farm in the Swartland area. An investigation of the results of the model under different constraints shows that, in general, strategies that depend on crop rotation principles are preferred to strategies that follow mono-crop production practices.

Taxonomic classification of world map units in crop producing areas of Argentina and Brazil with representative US soil series and major land resource areas in which they occur

Science.gov (United States)

Huckle, H. F. (Principal Investigator)

1980-01-01

The most probable current U.S. taxonomic classification of the soils estimated to dominate world soil map units (WSM)) in selected crop producing states of Argentina and Brazil are presented. Representative U.S. soil series the units are given. The map units occurring in each state are listed with areal extent and major U.S. land resource areas in which similar soils most probably occur. Soil series sampled in LARS Technical Report 111579 and major land resource areas in which they occur with corresponding similar WSM units at the taxonomic subgroup levels are given.

Population structure of Cynara cardunculus complex and the origin of the conspecific crops artichoke and cardoon.

Science.gov (United States)

Gatto, Angela; De Paola, Domenico; Bagnoli, Francesca; Vendramin, Giovanni Giuseppe; Sonnante, Gabriella

2013-09-01

Globe artichoke and leafy cardoon, two crops within the same species Cynara cardunculus, are traditionally cultivated in the Mediterranean region and play a significant role in the agricultural economy of this area. The two cultigens have different reproductive systems: artichoke is generally vegetatively propagated, while leafy cardoon is seed propagated. The domestication events underlying the origin of both artichoke and cultivated cardoon from their wild relative and the area of occurrence are not yet fully understood. The aim of this study was to investigate population structure in wild cardoon, globe artichoke and leafy cardoon material and infer domestication events. Thirty-five microsatellite (simple sequence repeat) markers, distributed in the C. cardunculus genome, and a large geographical and numerical sampling in southern Europe and North Africa were used to assess population structure and diversity. The results suggest the presence of two distinct domestication events for artichoke and leafy cardoon, and also suggest a new possible scenario, with western wild cardoon having originated from cultivated cardoon escaped from cultivation. Evidence was found for a demographic bottleneck in the past history of globe artichoke. The results shed new light on the relationships between the three taxa of C. cardunculus and highlight relevant aspects on the evolution of domestication of two crops with a different reproductive system within the same species. It is proposed that the probable centre of origin of artichoke is located in southern Italy, probably Sicily.

Population structure of Cynara cardunculus complex and the origin of the conspecific crops artichoke and cardoon

Science.gov (United States)

Gatto, Angela; De Paola, Domenico; Bagnoli, Francesca; Vendramin, Giovanni Giuseppe; Sonnante, Gabriella

2013-01-01

Background and Aims Globe artichoke and leafy cardoon, two crops within the same species Cynara cardunculus, are traditionally cultivated in the Mediterranean region and play a significant role in the agricultural economy of this area. The two cultigens have different reproductive systems: artichoke is generally vegetatively propagated, while leafy cardoon is seed propagated. The domestication events underlying the origin of both artichoke and cultivated cardoon from their wild relative and the area of occurrence are not yet fully understood. The aim of this study was to investigate population structure in wild cardoon, globe artichoke and leafy cardoon material and infer domestication events. Methods Thirty-five microsatellite (simple sequence repeat) markers, distributed in the C. cardunculus genome, and a large geographical and numerical sampling in southern Europe and North Africa were used to assess population structure and diversity. Key Results The results suggest the presence of two distinct domestication events for artichoke and leafy cardoon, and also suggest a new possible scenario, with western wild cardoon having originated from cultivated cardoon escaped from cultivation. Evidence was found for a demographic bottleneck in the past history of globe artichoke. Conclusions The results shed new light on the relationships between the three taxa of C. cardunculus and highlight relevant aspects on the evolution of domestication of two crops with a different reproductive system within the same species. It is proposed that the probable centre of origin of artichoke is located in southern Italy, probably Sicily. PMID:23877076

Identification of Abiotic Stress Protein Biomarkers by Proteomic Screening of Crop Cultivar Diversity.

Science.gov (United States)

Barkla, Bronwyn J

2016-09-08

Modern day agriculture practice is narrowing the genetic diversity in our food supply. This may compromise the ability to obtain high yield under extreme climactic conditions, threatening food security for a rapidly growing world population. To identify genetic diversity, tolerance mechanisms of cultivars, landraces and wild relatives of major crops can be identified and ultimately exploited for yield improvement. Quantitative proteomics allows for the identification of proteins that may contribute to tolerance mechanisms by directly comparing protein abundance under stress conditions between genotypes differing in their stress responses. In this review, a summary is provided of the data accumulated from quantitative proteomic comparisons of crop genotypes/cultivars which present different stress tolerance responses when exposed to various abiotic stress conditions, including drought, salinity, high/low temperature, nutrient deficiency and UV-B irradiation. This field of research aims to identify molecular features that can be developed as biomarkers for crop improvement, however without accurate phenotyping, careful experimental design, statistical robustness and appropriate biomarker validation and verification it will be challenging to deliver what is promised.

Identification of Abiotic Stress Protein Biomarkers by Proteomic Screening of Crop Cultivar Diversity

Directory of Open Access Journals (Sweden)

Bronwyn J. Barkla

2016-09-01

Full Text Available Modern day agriculture practice is narrowing the genetic diversity in our food supply. This may compromise the ability to obtain high yield under extreme climactic conditions, threatening food security for a rapidly growing world population. To identify genetic diversity, tolerance mechanisms of cultivars, landraces and wild relatives of major crops can be identified and ultimately exploited for yield improvement. Quantitative proteomics allows for the identification of proteins that may contribute to tolerance mechanisms by directly comparing protein abundance under stress conditions between genotypes differing in their stress responses. In this review, a summary is provided of the data accumulated from quantitative proteomic comparisons of crop genotypes/cultivars which present different stress tolerance responses when exposed to various abiotic stress conditions, including drought, salinity, high/low temperature, nutrient deficiency and UV-B irradiation. This field of research aims to identify molecular features that can be developed as biomarkers for crop improvement, however without accurate phenotyping, careful experimental design, statistical robustness and appropriate biomarker validation and verification it will be challenging to deliver what is promised.

From Concept to Commerce: Developing a Successful Fungal Endophyte Inoculant for Agricultural Crops.

Science.gov (United States)

Murphy, Brian R; Doohan, Fiona M; Hodkinson, Trevor R

2018-02-11

The development of endophyte inoculants for agricultural crops has been bedevilled by the twin problems of a lack of reliability and consistency, with a consequent lack of belief among end users in the efficacy of such treatments. We have developed a successful research pipeline for the production of a reliable, consistent and environmentally targeted fungal endophyte seed-delivered inoculant for barley cultivars. Our approach was developed de novo from an initial concept to source candidate endophyte inoculants from a wild relative of barley, Hordeum murinum (wall barley). A careful screening and selection procedure and extensive controlled environment testing of fungal endophyte strains, followed by multi-year field trials has resulted in the validation of an endophyte consortium suitable for barley crops grown on relatively dry sites. Our approach can be adapted for any crop or environment, provided that the set of first principles we have developed is followed. Here, we report how we developed the successful pipeline for the production of an economically viable fungal endophyte inoculant for barley cultivars.

Neglected vector-borne zoonoses in Europe: Into the wild.

NARCIS (Netherlands)

Tomassone, Laura; Berriatua, Eduardo; De Sousa, Rita; Duscher, Gerhard Georg; Mihalca, Andrei Daniel; Silaghi, Cornelia; Sprong, Hein; Zintl, Annetta

2018-01-01

Wild vertebrates are involved in the transmission cycles of numerous pathogens. Additionally, they can affect the abundance of arthropod vectors. Urbanization, landscape and climate changes, and the adaptation of vectors and wildlife to human habitats represent complex and evolving scenarios, which

The importance of wild meat in the Global South

DEFF Research Database (Denmark)

Nielsen, Martin R.; Meilby, Henrik; Smith-Hall, Carsten

2018-01-01

Information on the economic importance of wild meat to rural people is mainly based on small case studies conducted in limited geographical areas with high hunting intensities, which impede generalization of results. Through a one-year quarterly income survey of 7978 households in 24 countries...... is highest among the poorest households and inversely related to their reliance on domestic animal income. Seasonally, reliance on wild meat is inversely related to other incomes, suggesting a gap filling function. The fact that hunting is of low economic importance but widespread and mostly for subsistence...... suggests that wild meat is important in rural households’ diets. Through an approximated yield-effort curve estimation, we show that hunting appears economically sustainable in 78% of the observed communities although in most cases this might represent post-depletion sustainability. Our results imply...

Drought tolerance in wild plant populations: the case of common beans (Phaseolus vulgaris L..

Directory of Open Access Journals (Sweden)

Andrés J Cortés

Full Text Available Reliable estimations of drought tolerance in wild plant populations have proved to be challenging and more accessible alternatives are desirable. With that in mind, an ecological diversity study was conducted based on the geographical origin of 104 wild common bean accessions to estimate drought tolerance in their natural habitats. Our wild population sample covered a range of mesic to very dry habitats from Mexico to Argentina. Two potential evapotranspiration models that considered the effects of temperature and radiation were coupled with the precipitation regimes of the last fifty years for each collection site based on geographical information system analysis. We found that wild accessions were distributed among different precipitation regimes following a latitudinal gradient and that habitat ecological diversity of the collection sites was associated with natural sub-populations. We also detected a broader geographic distribution of wild beans across ecologies compared to cultivated common beans in a reference collection of 297 cultivars. Habitat drought stress index based on the Thornthwaite potential evapotranspiration model was equivalent to the Hamon estimator. Both ecological drought stress indexes would be useful together with population structure for the genealogical analysis of gene families in common bean, for genome-wide genetic-environmental associations, and for postulating the evolutionary history and diversification processes that have occurred for the species. Finally, we propose that wild common bean should be taken into account to exploit variation for drought tolerance in cultivated common bean which is generally considered susceptible as a crop to drought stress.

Air-quality and Climatic Consequences of Bioenergy Crop Cultivation

Science.gov (United States)

Porter, William Christian

Bioenergy is expected to play an increasingly significant role in the global energy budget. In addition to the use of liquid energy forms such as ethanol and biodiesel, electricity generation using processed energy crops as a partial or full coal alternative is expected to increase, requiring large-scale conversions of land for the cultivation of bioenergy feedstocks such as cane, grasses, or short rotation coppice. With land-use change identified as a major contributor to changes in the emission of biogenic volatile organic compounds (BVOCs), many of which are known contributors to the pollutants ozone (O 3) and fine particulate matter (PM2.5), careful review of crop emission profiles and local atmospheric chemistry will be necessary to mitigate any unintended air-quality consequences. In this work, the atmospheric consequences of bioenergy crop replacement are examined using both the high-resolution regional chemical transport model WRF/Chem (Weather Research and Forecasting with Chemistry) and the global climate model CESM (Community Earth System Model). Regional sensitivities to several representative crop types are analyzed, and the impacts of each crop on air quality and climate are compared. Overall, the high emitting crops (eucalyptus and giant reed) were found to produce climate and human health costs totaling up to 40% of the value of CO 2 emissions prevented, while the related costs of the lowest-emitting crop (switchgrass) were negligible.

Building crop models within different crop modelling frameworks

NARCIS (Netherlands)

Adam, M.Y.O.; Corbeels, M.; Leffelaar, P.A.; Keulen, van H.; Wery, J.; Ewert, F.

2012-01-01

Modular frameworks for crop modelling have evolved through simultaneous progress in crop science and software development but differences among these frameworks exist which are not well understood, resulting in potential misuse for crop modelling. In this paper we review differences and similarities

Uncertain and multi-objective programming models for crop planting structure optimization

Directory of Open Access Journals (Sweden)

Mo LI,Ping GUO,Liudong ZHANG,Chenglong ZHANG

2016-03-01

Full Text Available Crop planting structure optimization is a significant way to increase agricultural economic benefits and improve agricultural water management. The complexities of fluctuating stream conditions, varying economic profits, and uncertainties and errors in estimated modeling parameters, as well as the complexities among economic, social, natural resources and environmental aspects, have led to the necessity of developing optimization models for crop planting structure which consider uncertainty and multi-objectives elements. In this study, three single-objective programming models under uncertainty for crop planting structure optimization were developed, including an interval linear programming model, an inexact fuzzy chance-constrained programming (IFCCP model and an inexact fuzzy linear programming (IFLP model. Each of the three models takes grayness into account. Moreover, the IFCCP model considers fuzzy uncertainty of parameters/variables and stochastic characteristics of constraints, while the IFLP model takes into account the fuzzy uncertainty of both constraints and objective functions. To satisfy the sustainable development of crop planting structure planning, a fuzzy-optimization-theory-based fuzzy linear multi-objective programming model was developed, which is capable of reflecting both uncertainties and multi-objective. In addition, a multi-objective fractional programming model for crop structure optimization was also developed to quantitatively express the multi-objective in one optimization model with the numerator representing maximum economic benefits and the denominator representing minimum crop planting area allocation. These models better reflect actual situations, considering the uncertainties and multi-objectives of crop planting structure optimization systems. The five models developed were then applied to a real case study in Minqin County, north-west China. The advantages, the applicable conditions and the solution methods

Diversity for seedling vigor in wild barley (hordeum vulgare L. subs. simpatina) germplasm

International Nuclear Information System (INIS)

Tyagi, K.; Park, M.R.; Lee, H.J.; Lee, C.A.; Rehman, S.; Steffenson, B.; Lee, K.J.; Yun, S.J.

2011-01-01

Seedling vigor is important for improving stand establishment of barley crops, particularly in arid regions and areas where the soil temperature is low at sowing time. Three hundred and fifteen wild barley accessions from the Wild Barley Diversity Collection (WBDC) were evaluated for nine seedling vigor traits in a poly house and growth chamber under hydroponic conditions. The accessions exhibited significant differences for all traits investigated. Traits showing greatest phenotypic variation were seedling visual score, plant height, shoot fresh weight, shoot dry weight and shoot length. Seed weight exhibited the least variation. Seed weight was significantly correlated with visual seedling score and shoot and seedling fresh and dry weight. Correlation analysis showed that the visual seedling score was a reliable method for estimating seedling vigor in wild barley. The first three principal components (PC) explained 82.3% of the variation present in the WBDC with PC1(54.0%) associated with shoot fresh weight, shoot dry weight, seedling dry weight, seedling fresh weight, shoot length and seedling length. Accessions from the southwest portion of the Fertile Crescent, like WBDC020 (Turkey), WBDC238 (Jordan) and WBDC244 (Jordan) exhibited the highest positive values for most of the plant vigor traits investigated. These wild barley accessions likely carry alleles that will be useful for the improvement of plant vigor traits in cultivated barley. (author)

Crop yield response to climate change varies with cropping intensity.

Science.gov (United States)

Challinor, Andrew J; Parkes, Ben; Ramirez-Villegas, Julian

2015-04-01

Projections of the response of crop yield to climate change at different spatial scales are known to vary. However, understanding of the causes of systematic differences across scale is limited. Here, we hypothesize that heterogeneous cropping intensity is one source of scale dependency. Analysis of observed global data and regional crop modelling demonstrate that areas of high vs. low cropping intensity can have systematically different yields, in both observations and simulations. Analysis of global crop data suggests that heterogeneity in cropping intensity is a likely source of scale dependency for a number of crops across the globe. Further crop modelling and a meta-analysis of projected tropical maize yields are used to assess the implications for climate change assessments. The results show that scale dependency is a potential source of systematic bias. We conclude that spatially comprehensive assessments of climate impacts based on yield alone, without accounting for cropping intensity, are prone to systematic overestimation of climate impacts. The findings therefore suggest a need for greater attention to crop suitability and land use change when assessing the impacts of climate change. © 2015 John Wiley & Sons Ltd.

Country-specific effects of neonicotinoid pesticides on honey bees and wild bees.

Science.gov (United States)

Woodcock, B A; Bullock, J M; Shore, R F; Heard, M S; Pereira, M G; Redhead, J; Ridding, L; Dean, H; Sleep, D; Henrys, P; Peyton, J; Hulmes, S; Hulmes, L; Sárospataki, M; Saure, C; Edwards, M; Genersch, E; Knäbe, S; Pywell, R F

2017-06-30

Neonicotinoid seed dressings have caused concern world-wide. We use large field experiments to assess the effects of neonicotinoid-treated crops on three bee species across three countries (Hungary, Germany, and the United Kingdom). Winter-sown oilseed rape was grown commercially with either seed coatings containing neonicotinoids (clothianidin or thiamethoxam) or no seed treatment (control). For honey bees, we found both negative (Hungary and United Kingdom) and positive (Germany) effects during crop flowering. In Hungary, negative effects on honey bees (associated with clothianidin) persisted over winter and resulted in smaller colonies in the following spring (24% declines). In wild bees ( Bombus terrestris and Osmia bicornis ), reproduction was negatively correlated with neonicotinoid residues. These findings point to neonicotinoids causing a reduced capacity of bee species to establish new populations in the year following exposure. Copyright © 2017 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

Domesticated, Genetically Engineered, and Wild Plant Relatives Exhibit Unintended Phenotypic Differences: A Comparative Meta-Analysis Profiling Rice, Canola, Maize, Sunflower, and Pumpkin

Directory of Open Access Journals (Sweden)

Alejandra Hernández-Terán

2017-12-01

Full Text Available Agronomic management of plants is a powerful evolutionary force acting on their populations. The management of cultivated plants is carried out by the traditional process of human selection or plant breeding and, more recently, by the technologies used in genetic engineering (GE. Even though crop modification through GE is aimed at specific traits, it is possible that other non-target traits can be affected by genetic modification due to the complex regulatory processes of plant metabolism and development. In this study, we conducted a meta-analysis profiling the phenotypic consequences of plant breeding and GE, and compared modified cultivars with wild relatives in five crops of global economic and cultural importance: rice, maize, canola, sunflower, and pumpkin. For these five species, we analyzed the literature with documentation of phenotypic traits that are potentially related to fitness for the same species in comparable conditions. The information was analyzed to evaluate whether the different processes of modification had influenced the phenotype in such a way as to cause statistical differences in the state of specific phenotypic traits or grouping of the organisms depending on their genetic origin [wild, domesticated with genetic engineering (domGE, and domesticated without genetic engineering (domNGE]. In addition, we tested the hypothesis that, given that transgenic plants are a construct designed to impact, in many cases, a single trait of the plant (e.g., lepidopteran resistance, the phenotypic differences between domGE and domNGE would be either less (or inexistent than between the wild and domesticated relatives (either domGE or domNGE. We conclude that (1 genetic modification (either by selective breeding or GE can be traced phenotypically when comparing wild relatives with their domesticated relatives (domGE and domNGE and (2 the existence and the magnitude of the phenotypic differences between domGE and domNGE of the same crop

to Phosphorus Fertilization, Crop Sequence and Tillage Management

Directory of Open Access Journals (Sweden)

Xiaopeng Gao

2012-01-01

Full Text Available Field experiments were conducted at two locations in Manitoba, Canada, to determine the effect of crop rotation, phosphorus (P fertilization and tillage on grain yield and grain concentrations of Cd and Zn in durum wheat (Triticum durum L.. Compared to conventional tillage (CT, reduced tillage (RT management decreased grain Cd and increased grain yield and grain Zn in half of the site-years. The type of preceding crops of spring wheat-flax or canola-flax had little influence. Rate and timing of P application had little effect on grain Cd, but increasing P rate tended to decrease grain Zn. No interactive effect was detected among tested factors. Grain Zn was not related to grain Cd, but positively to other nutrients such as Fe, Mn, P, Ca, K, and Mg. Both grain Zn and Fe correlated positively with grain protein content, suggesting protein may represent a sink for micronutrients. The study suggested that the tillage management may have beneficial effects on both grain yield and quality. Phosphorus fertilizer can remain available for subsequent crops and high annual inputs in the crop sequence may decrease crop grain Zn. Understanding the environment is important in determining the impact of agricultural management on agronomic and nutrient traits.

Management of crop residues for sustainable crop production. Results of a co-ordinated research project 1996-2001

International Nuclear Information System (INIS)

2003-05-01

-residue management practice. More than 30% of N was lost from crop residues. When N was applied as crop residues, its retention in the soil was higher than for fertilizer N, but its recovery by plants was poor, as mentioned above. These results highlight the importance of investigating fertilizer-management practices to minimize the losses, especially during the early part of the cropping season. Application of straw resulted in increases in grain yields of rice and wheat of about 10% in experiments conducted in China. However, in general, addition of straw did not increase crop yields in other locations. This is encouraging, as initial immobilization of N due to application of high inputs of carbon through residues did not exhibit negative effects on crop yields. The experiments in India demonstrated simple practices, using wheat and rice residues, to produce compost as an alternative to stubble burning. Such practices can have important implications apart from the desired maintenance of soil organic matter and improving plant growth. For example, approximately 12 million tonnes of rice and wheat straw are burnt annually in Punjab, India, causing atmospheric pollution and producing over 28 million tonnes of carbon dioxide, a greenhouse gas. In addition, various gaseous forms of N are emitted during burning, representing a loss of $17 million in fertilizer equivalents and significant pollution of the environment by nitrous oxide. The results obtained from crop-residue application studies are of importance for residue-management practices. There is an increasing need for such information as in many countries new legislation has been introduced to ban the on-site burning of crop residues, for environmental reasons. Moreover, this CRP demonstrated the use of 15 N techniques for investigating the fate of N in crop residues and fertilizers under different management practices and cropping systems, which will be useful for other related CRPs on agroforestry, rainfed and rice

Impact of Cropping Systems, Soil Inoculum, and Plant Species Identity on Soil Bacterial Community Structure.

Science.gov (United States)

Ishaq, Suzanne L; Johnson, Stephen P; Miller, Zach J; Lehnhoff, Erik A; Olivo, Sarah; Yeoman, Carl J; Menalled, Fabian D

2017-02-01

Farming practices affect the soil microbial community, which in turn impacts crop growth and crop-weed interactions. This study assessed the modification of soil bacterial community structure by organic or conventional cropping systems, weed species identity [Amaranthus retroflexus L. (redroot pigweed) or Avena fatua L. (wild oat)], and living or sterilized inoculum. Soil from eight paired USDA-certified organic and conventional farms in north-central Montana was used as living or autoclave-sterilized inoculant into steam-pasteurized potting soil, planted with Am. retroflexus or Av. fatua and grown for two consecutive 8-week periods to condition soil nutrients and biota. Subsequently, the V3-V4 regions of the microbial 16S rRNA gene were sequenced by Illumina MiSeq. Treatments clustered significantly, with living or sterilized inoculum being the strongest delineating factor, followed by organic or conventional cropping system, then individual farm. Living inoculum-treated soil had greater species richness and was more diverse than sterile inoculum-treated soil (observed OTUs, Chao, inverse Simpson, Shannon, P soil contained more Chloroflexi and Acidobacteria, while the sterile inoculum soil had more Bacteroidetes, Firmicutes, Gemmatimonadetes, and Verrucomicrobia. Organically farmed inoculum-treated soil had greater species richness, more diversity (observed OTUs, Chao, Shannon, P soil. Cyanobacteria were higher in pots growing Am. retroflexus, regardless of inoculum type, for three of the four organic farms. Results highlight the potential of cropping systems and species identity to modify soil bacterial communities, subsequently modifying plant growth and crop-weed competition.

Biogas production from energy crops and crop residues

Energy Technology Data Exchange (ETDEWEB)

Lehtomaeki, A.

2006-07-01

The feasibility of utilising energy crops and crop residues in methane production through anaerobic digestion in boreal conditions was evaluated in this thesis. Potential boreal energy crops and crop residues were screened for their suitability for methane production, and the effects of harvest time and storage on the methane potential of crops was evaluated. Codigestion of energy crops and crop residues with cow manure, as well as digestion of energy crops alone in batch leach bed reactors with and without a second stage upflow anaerobic sludge blanket reactor (UASB) or methanogenic filter (MF) were evaluated. The methane potentials of crops, as determined in laboratory methane potential assays, varied from 0.17 to 0.49 m3 CH{sub 4} kg-1 VS{sub added} (volatile solids added) and from 25 to 260 m3 CH4 t-1 ww (tons of wet weight). Jerusalem artichoke, timothy-clover and reed canary grass gave the highest methane potentials of 2 900-5 400 m3 CH{sub 4} ha-1, corresponding to a gross energy potential of 28-53 MWh ha-1 and 40 000-60 000 km ha-1 in passenger car transport. The methane potentials per ww increased with most crops as the crops matured. Ensiling without additives resulted in minor losses (0-13%) in the methane potential of sugar beet tops but more substantial losses (17-39%) in the methane potential of grass, while ensiling with additives was shown to have potential in improving the methane potentials of these substrates by up to 19-22%. In semi-continuously fed laboratory continuously stirred tank reactors (CSTRs) co-digestion of manure and crops was shown feasible with feedstock VS containing up to 40% of crops. The highest specific methane yields of 0.268, 0.229 and 0.213 m3 CH{sub 4} kg-1 VS{sub added} in co-digestion of cow manure with grass, sugar beet tops and straw, respectively, were obtained with 30% of crop in the feedstock, corresponding to 85-105% of the methane potential in the substrates as determined by batch assays. Including 30% of crop in

Visitation by wild and managed bees (Hymenoptera: Apoidea) to eastern U.S. native plants for use in conservation programs.

Science.gov (United States)

Tuell, Julianna K; Fiedler, Anna K; Landis, Douglas; Isaacs, Rufus

2008-06-01

Addition of floral resources to agricultural field margins has been shown to increase abundance of beneficial insects in crop fields, but most plants recommended for this use are non-native annuals. Native perennial plants with different bloom periods can provide floral resources for bees throughout the growing season for use in pollinator conservation projects. To identify the most suitable plants for this use, we examined the relative attractiveness to wild and managed bees of 43 eastern U.S. native perennial plants, grown in a common garden setting. Floral characteristics were evaluated for their ability to predict bee abundance and taxa richness. Of the wild bees collected, the most common species (62%) was Bombus impatiens Cresson. Five other wild bee species were present between 3 and 6% of the total: Lasioglossum admirandum (Sandhouse), Hylaeus affinis (Smith), Agapostemon virescens (F.), Halictus ligatus Say, and Ceratina calcarata/dupla Robertson/Say. The remaining wild bee species were present at wild bees; 9 were highly attractive, and 20 were moderately attractive. Honey bees visited 24 of the 43 plant species at least once. Floral area was the only measured factor accounting for variation in abundance and richness of wild bees but did not explain variation in honey bee abundance. Results of this study can be used to guide selection of flowering plants to provide season-long forage for conservation of wild bees.

Wild boar mapping using population-density statistics: From polygons to high resolution raster maps.

Science.gov (United States)

Pittiglio, Claudia; Khomenko, Sergei; Beltran-Alcrudo, Daniel

2018-01-01

The wild boar is an important crop raider as well as a reservoir and agent of spread of swine diseases. Due to increasing densities and expanding ranges worldwide, the related economic losses in livestock and agricultural sectors are significant and on the rise. Its management and control would strongly benefit from accurate and detailed spatial information on species distribution and abundance, which are often available only for small areas. Data are commonly available at aggregated administrative units with little or no information about the distribution of the species within the unit. In this paper, a four-step geostatistical downscaling approach is presented and used to disaggregate wild boar population density statistics from administrative units of different shape and size (polygons) to 5 km resolution raster maps by incorporating auxiliary fine scale environmental variables. 1) First a stratification method was used to define homogeneous bioclimatic regions for the analysis; 2) Under a geostatistical framework, the wild boar densities at administrative units, i.e. subnational areas, were decomposed into trend and residual components for each bioclimatic region. Quantitative relationships between wild boar data and environmental variables were estimated through multiple regression and used to derive trend components at 5 km spatial resolution. Next, the residual components (i.e., the differences between the trend components and the original wild boar data at administrative units) were downscaled at 5 km resolution using area-to-point kriging. The trend and residual components obtained at 5 km resolution were finally added to generate fine scale wild boar estimates for each bioclimatic region. 3) These maps were then mosaicked to produce a final output map of predicted wild boar densities across most of Eurasia. 4) Model accuracy was assessed at each different step using input as well as independent data. We discuss advantages and limits of the method and its

A walk on the wild side: Oryza species as source for rice abiotic stress tolerance.

Science.gov (United States)

Menguer, Paloma Koprovski; Sperotto, Raul Antonio; Ricachenevsky, Felipe Klein

2017-01-01

Oryza sativa, the common cultivated rice, is one of the most important crops for human consumption, but production is increasingly threatened by abiotic stresses. Although many efforts have resulted in breeding rice cultivars that are relatively tolerant to their local environments, climate changes and population increase are expected to soon call for new, fast generation of stress tolerant rice germplasm, and current within-species rice diversity might not be enough to overcome such needs. The Oryza genus contains other 23 wild species, with only Oryza glaberrima being also domesticated. Rice domestication was performed with a narrow genetic diversity, and the other Oryza species are a virtually untapped genetic resource for rice stress tolerance improvement. Here we review the origin of domesticated Oryza sativa from wild progenitors, the ecological and genomic diversity of the Oryza genus, and the stress tolerance variation observed for wild Oryza species, including the genetic basis underlying the tolerance mechanisms found. The summary provided here is important to indicate how we should move forward to unlock the full potential of these germplasms for rice improvement.

Review of anthraquinone applications for pest management and agricultural crop protection.

Science.gov (United States)

DeLiberto, Shelagh T; Werner, Scott J

2016-10-01

We have reviewed published anthraquinone applications for international pest management and agricultural crop protection from 1943 to 2016. Anthraquinone (AQ) is commonly found in dyes, pigments and many plants and organisms. Avian repellent research with AQ began in the 1940s. In the context of pest management, AQ is currently used as a chemical repellent, perch deterrent, insecticide and feeding deterrent in many wild birds, and in some mammals, insects and fishes. Criteria for evaluation of effective chemical repellents include efficacy, potential for wildlife hazards, phytotoxicity and environmental persistence. As a biopesticide, AQ often meets these criteria of efficacy for the non-lethal management of agricultural depredation caused by wildlife. We summarize published applications of AQ for the protection of newly planted and maturing crops from pest birds. Conventional applications of AQ-based repellents include preplant seed treatments [e.g. corn (Zea mays L.), rice (Oryza sativa L.), sunflower (Helianthus annuus L.), wheat (Triticum spp.), millet (Panicum spp.), sorghum (Sorghum bicolor L.), pelletized feed and forest tree species] and foliar applications for rice, sunflower, lettuce (Lactuca sativa L.), turf, sugar beets (Beta vulgaris L.), soybean (Glycine max L.), sweet corn and nursery, fruit and nut crops. In addition to agricultural repellent applications, AQ has also been used to treat toxicants for the protection of non-target birds. Few studies have demonstrated AQ repellency in mammals, including wild boar (Sus scrofa, L.), thirteen-lined ground squirrels (Ictidomys tridecemlineatus, Mitchill), black-tailed prairie dogs (Cyomys ludovicainus, Ord.), common voles (Microtus arvalis, Pallas), house mice (Mus musculus, L.), Tristram's jirds (Meriones tristrami, Thomas) and black rats (Rattus rattus L.). Natural sources of AQ and its derivatives have also been identified as insecticides and insect repellents. As a natural or synthetic biopesticide, AQ

A Vavilovian approach to discovering crop-associated microbes with potential to enhance plant immunity

Directory of Open Access Journals (Sweden)

Iago Lowe Hale

2014-09-01

Full Text Available Through active associations with a diverse community of largely non-pathogenic microbes, a plant may be thought of as possessing an extended genotype, an interactive cross-organismal genome with potential, exploitable implications for plant immunity. The successful enrichment of plant microbiomes with beneficial species has led to numerous commercial applications, and the hunt for new biocontrol organisms continues. Increasingly flexible and affordable sequencing technologies, supported by increasingly comprehensive taxonomic databases, make the characterization of non-model crop-associated microbiomes a widely accessible research method toward this end; and such studies are becoming more frequent. A summary of this emerging literature reveals, however, the need for a more systematic research lens in the face of what is already a metagenomics data deluge. Considering the processes and consequences of crop evolution and domestication, we assert that the judicious integration of in situ crop wild relatives into phytobiome research efforts presents a singularly powerful tool for separating signal from noise, thereby facilitating a more efficient means of identifying candidate plant-associated microbes with the potential for enhanci

137Cs monitoring in the meat of wild boar population in Slovakia

Directory of Open Access Journals (Sweden)

Katarina Beňová

2016-06-01

Full Text Available Currently, due to the elapsed time and the nature of the Chernobyl accident, the only artificial radionuclide present in the soil is 137Cs, with a physical half-life conversion of 30.17 years. The 137Cs is quickly integrated into a biological cycle, similar to potassium. Generally, radionuclides are characterized by their mobility in soil. Contamination of materials and food by radionuclides represent a serious problem and has a negative impact on human health. The threat of international terrorism and the inability to forestall the impact of natural disasters on nuclear energetic (Fukushima accident, are also reasons for continuous monitoring of food safety. According screening measurement performed in European countries, high radioactivity levels were reported in the wild boars muscles from Sumava (Czech Republic. Seasonal fluctuation of 137Cs activity in the wild boar meat samples was observed in the forests on the southern Rhineland. Monitoring of 137Cs activity in the wild boar meat samples in the hunting grounds in Slovakia was initiated based on the reports on exceeding limits of the content of radiocaesium in the meat of wild boar from the surrounding countries. The aim of this study was to determine the 137Cs post Chernobyl contamination of wild boars population in different hunting districts of Slovakia during 2013 - 2014. A total of 60 thigh muscle samples from wild boars of different age categories (4 months - 2 years were evaluated. 137Cs activity was measured by gamma spectrometry (Canberra. Despite the fact Slovakia is closer to Chernobyl as Czech Republic and Germany, the 137Cs activity measured was very low and far below the permitted limit. The highest radiocaesium activity level measured in muscle was 37.2 Bq.kg-1 ±4.7%. Wild boar originated from Zlate Moravce district. The measurement results show, that 137Cs contamination levels of game in Slovakia are low. Radiocaesium activity in examined samples was very low and

Connecting Biochemical Photosynthesis Models with Crop Models to Support Crop Improvement.

Science.gov (United States)

Wu, Alex; Song, Youhong; van Oosterom, Erik J; Hammer, Graeme L

2016-01-01

The next advance in field crop productivity will likely need to come from improving crop use efficiency of resources (e.g., light, water, and nitrogen), aspects of which are closely linked with overall crop photosynthetic efficiency. Progress in genetic manipulation of photosynthesis is confounded by uncertainties of consequences at crop level because of difficulties connecting across scales. Crop growth and development simulation models that integrate across biological levels of organization and use a gene-to-phenotype modeling approach may present a way forward. There has been a long history of development of crop models capable of simulating dynamics of crop physiological attributes. Many crop models incorporate canopy photosynthesis (source) as a key driver for crop growth, while others derive crop growth from the balance between source- and sink-limitations. Modeling leaf photosynthesis has progressed from empirical modeling via light response curves to a more mechanistic basis, having clearer links to the underlying biochemical processes of photosynthesis. Cross-scale modeling that connects models at the biochemical and crop levels and utilizes developments in upscaling leaf-level models to canopy models has the potential to bridge the gap between photosynthetic manipulation at the biochemical level and its consequences on crop productivity. Here we review approaches to this emerging cross-scale modeling framework and reinforce the need for connections across levels of modeling. Further, we propose strategies for connecting biochemical models of photosynthesis into the cross-scale modeling framework to support crop improvement through photosynthetic manipulation.

Connecting Biochemical Photosynthesis Models with Crop Models to Support Crop Improvement

Science.gov (United States)

Wu, Alex; Song, Youhong; van Oosterom, Erik J.; Hammer, Graeme L.

2016-01-01

The next advance in field crop productivity will likely need to come from improving crop use efficiency of resources (e.g., light, water, and nitrogen), aspects of which are closely linked with overall crop photosynthetic efficiency. Progress in genetic manipulation of photosynthesis is confounded by uncertainties of consequences at crop level because of difficulties connecting across scales. Crop growth and development simulation models that integrate across biological levels of organization and use a gene-to-phenotype modeling approach may present a way forward. There has been a long history of development of crop models capable of simulating dynamics of crop physiological attributes. Many crop models incorporate canopy photosynthesis (source) as a key driver for crop growth, while others derive crop growth from the balance between source- and sink-limitations. Modeling leaf photosynthesis has progressed from empirical modeling via light response curves to a more mechanistic basis, having clearer links to the underlying biochemical processes of photosynthesis. Cross-scale modeling that connects models at the biochemical and crop levels and utilizes developments in upscaling leaf-level models to canopy models has the potential to bridge the gap between photosynthetic manipulation at the biochemical level and its consequences on crop productivity. Here we review approaches to this emerging cross-scale modeling framework and reinforce the need for connections across levels of modeling. Further, we propose strategies for connecting biochemical models of photosynthesis into the cross-scale modeling framework to support crop improvement through photosynthetic manipulation. PMID:27790232

Zoonotic tick-borne bacteria among wild boars (Sus scrofa in Central Italy

Directory of Open Access Journals (Sweden)

Valentina Virginia Ebani

2017-03-01

Full Text Available The objective of this investigation was to estimate the occurrence of infections by the three zoonotic bacteria Anaplasma phagocytophilum (A. phagocytophilum, Borrelia burgdorferi sensu lato (B. burgdorferi s.l. and Coxiella burnetii in wild boars (Sus scrofa in Central Italy. The spleen samples from 100 hunted wild boars were submitted to DNA extraction and PCR assays were carried out to detect the three agents. One (1% animal was positive for A. phagocytophilum, and three (3% for B. burgdorferi s.l. No positive reactions were observed for Coxiella burnetii. Wild boars did not seem to play an important role in the epidemiology of the three investigated agents. However, the detection of A. phagocytophilum and B. burgdorferi s.l. in the spleen of the tested animals showed that wild boars can harbor these pathogens, thus ticked that feeding on infected wild boars are likely to become infected, too, which represents a source of infection for other animals and humans. This is the first detection of A. phagocytophilum in wild boars in Italy.

Selective depredation of planted hardwood seedlings by wild pigs in a wetland restoration area

International Nuclear Information System (INIS)

Mayer, J.J.

1999-01-01

Following the planting of several thousand hardwood seedlings in a 69-ha wetland restoration area in west-central South Carolina, wild pigs (Sus scrofa) depredated a large percentage of the young trees. This planting was undertaken as part of a mitigation effort to restore a bottomland hardwood community in the corridor and delta of a third order stream that had been previously impacted by the discharge of heated nuclear reactor effluent. The depredated restoration areas had been pretreated with both herbicide and control burning prior to planting the hardwood seedlings. After discovery of the wild pig damage, these areas were surveyed on foot to assess the magnitude of the depredation on the planted seedling crop. Foraging by the local wild pigs in the pretreatment areas selectively impacted only four of the nine hardwood species used in this restoration effort. Based on the surveys, the remaining five species did not appear to have been impacted at all. A variety of reasons could be used to explain this phenomenon. The pretreatment methodology is thought to have been the primary aspect of the restoration program that initially led the wild pigs to discover the planted seedlings. In addition, it is possible that a combination of other factors associated with odor and taste may have resulted in the selective depredation. Future wetland restoration efforts in areas with wild pigs should consider pretreatment methods and species to be planted. If pretreatment methods and species such as discussed in the present study must be used, then the prior removal of wild pigs from surrounding lands will help prevent depredations by this non-native species

Selective depredation of planted hardwood seedlings by wild pigs in a wetland restoration area

Energy Technology Data Exchange (ETDEWEB)

Mayer, J.J.

1999-12-17

Following the planting of several thousand hardwood seedlings in a 69-ha wetland restoration area in west-central South Carolina, wild pigs (Sus scrofa) depredated a large percentage of the young trees. This planting was undertaken as part of a mitigation effort to restore a bottomland hardwood community in the corridor and delta of a third order stream that had been previously impacted by the discharge of heated nuclear reactor effluent. The depredated restoration areas had been pretreated with both herbicide and control burning prior to planting the hardwood seedlings. After discovery of the wild pig damage, these areas were surveyed on foot to assess the magnitude of the depredation on the planted seedling crop. Foraging by the local wild pigs in the pretreatment areas selectively impacted only four of the nine hardwood species used in this restoration effort. Based on the surveys, the remaining five species did not appear to have been impacted at all. A variety of reasons could be used to explain this phenomenon. The pretreatment methodology is thought to have been the primary aspect of the restoration program that initially led the wild pigs to discover the planted seedlings. In addition, it is possible that a combination of other factors associated with odor and taste may have resulted in the selective depredation. Future wetland restoration efforts in areas with wild pigs should consider pretreatment methods and species to be planted. If pretreatment methods and species such as discussed in the present study must be used, then the prior removal of wild pigs from surrounding lands will help prevent depredations by this non-native species.

Neonicotinoid pesticide exposure impairs crop pollination services provided by bumblebees

Science.gov (United States)

Stanley, Dara A.; Garratt, Michael P. D.; Wickens, Jennifer B.; Wickens, Victoria J.; Potts, Simon G.; Raine, Nigel E.

2015-12-01

Recent concern over global pollinator declines has led to considerable research on the effects of pesticides on bees. Although pesticides are typically not encountered at lethal levels in the field, there is growing evidence indicating that exposure to field-realistic levels can have sublethal effects on bees, affecting their foraging behaviour, homing ability and reproductive success. Bees are essential for the pollination of a wide variety of crops and the majority of wild flowering plants, but until now research on pesticide effects has been limited to direct effects on bees themselves and not on the pollination services they provide. Here we show the first evidence to our knowledge that pesticide exposure can reduce the pollination services bumblebees deliver to apples, a crop of global economic importance. Bumblebee colonies exposed to a neonicotinoid pesticide provided lower visitation rates to apple trees and collected pollen less often. Most importantly, these pesticide-exposed colonies produced apples containing fewer seeds, demonstrating a reduced delivery of pollination services. Our results also indicate that reduced pollination service delivery is not due to pesticide-induced changes in individual bee behaviour, but most likely due to effects at the colony level. These findings show that pesticide exposure can impair the ability of bees to provide pollination services, with important implications for both the sustained delivery of stable crop yields and the functioning of natural ecosystems.

Evaluation of Aqua crop Model to Predict Crop Water Productivity

International Nuclear Information System (INIS)

Mohd Noor Hidayat Adenan; Faiz Ahmad; Shyful Azizi Abdul Rahman; Abdul Rahim Harun; Khairuddin Abdul Rahim

2015-01-01

Water and nutrient are critical inputs for crop production, especially in meeting challenges from increasing fertilizer cost and irregular water availability associated with climate change. The Land and Water Division of Food and Agriculture Organization of the United Nations (FAO) has developed Aqua Crop, an integrated application software to simulate the interactions between plant, water and soil. Field management and irrigation management are the factors that need to be considered since it affects the interactions. Four critical components are needed in the Aqua Crop model, viz. climate, crop, field management and soil conditions. In our case study, climate data from rice field in Utan Aji, Kangar, Perlis was applied to run a simulation by using AquaCrop model. The rice crop was also assessed against deficit irrigation schedules and we found that use of water at optimum level increased rice yield. Results derived from the use of the model corresponded conventional assessment. This model can be adopted to help farmers in Malaysia in planning crop and field management to increase the crop productivity, especially in areas where the water is limited. (author)

Spatial distribution and risk factors of Brucellosis in Iberian wild ungulates

Directory of Open Access Journals (Sweden)

de la Fuente José

2010-03-01

Full Text Available Abstract Background The role of wildlife as a brucellosis reservoir for humans and domestic livestock remains to be properly established. The aim of this work was to determine the aetiology, apparent prevalence, spatial distribution and risk factors for brucellosis transmission in several Iberian wild ungulates. Methods A multi-species indirect immunosorbent assay (iELISA using Brucella S-LPS antigen was developed. In several regions having brucellosis in livestock, individual serum samples were taken between 1999 and 2009 from 2,579 wild bovids, 6,448 wild cervids and4,454 Eurasian wild boar (Sus scrofa, and tested to assess brucellosis apparent prevalence. Strains isolated from wild boar were characterized to identify the presence of markers shared with the strains isolated from domestic pigs. Results Mean apparent prevalence below 0.5% was identified in chamois (Rupicapra pyrenaica, Iberian wild goat (Capra pyrenaica, and red deer (Cervus elaphus. Roe deer (Capreolus capreolus, fallow deer (Dama dama, mouflon (Ovis aries and Barbary sheep (Ammotragus lervia tested were seronegative. Only one red deer and one Iberian wild goat resulted positive in culture, isolating B. abortus biovar 1 and B. melitensis biovar 1, respectively. Apparent prevalence in wild boar ranged from 25% to 46% in the different regions studied, with the highest figures detected in South-Central Spain. The probability of wild boar being positive in the iELISA was also affected by age, age-by-sex interaction, sampling month, and the density of outdoor domestic pigs. A total of 104 bacterial isolates were obtained from wild boar, being all identified as B. suis biovar 2. DNA polymorphisms were similar to those found in domestic pigs. Conclusions In conclusion, brucellosis in wild boar is widespread in the Iberian Peninsula, thus representing an important threat for domestic pigs. By contrast, wild ruminants were not identified as a significant brucellosis reservoir for

Wild Prunus Fruit Species as a Rich Source of Bioactive Compounds.

Science.gov (United States)

Mikulic-Petkovsek, Maja; Stampar, Franci; Veberic, Robert; Sircelj, Helena

2016-08-01

Sugars, organic acids, carotenoids, tocopherols, chlorophylls, and phenolic compounds were quantified in fruit of 4 wild growing Prunus species (wild cherry, bird cherry, blackthorn, and mahaleb cherry) using HPLC-DAD-MSn. In wild Prunus, the major sugars were glucose and fructose, whereas malic and citric acids dominated among organic acids. The most abundant classes of phenolic compounds in the analyzed fruit species were anthocyanins, flavonols, derivatives of cinnamic acids, and flavanols. Two major groups of anthocyanins measured in Prunus fruits were cyanidin-3-rutinoside and cyanidin-3-glucoside. Flavonols were represented by 19 derivatives of quercetin, 10 derivatives of kaempferol, and 2 derivatives of isorhamnetin. The highest total flavonol content was measured in mahaleb cherry and bird cherry, followed by blackthorn and wild cherry fruit. Total phenolic content varied from 2373 (wild cherry) to 11053 mg GAE per kg (bird cherry) and ferric reducing antioxidant power antioxidant activity from 7.26 to 31.54 mM trolox equivalents per kg fruits. © 2016 Institute of Food Technologists®

GEOGLAM Crop Assessment Tool: Adapting from global agricultural monitoring to food security monitoring

Science.gov (United States)

Humber, M. L.; Becker-Reshef, I.; Nordling, J.; Barker, B.; McGaughey, K.

2014-12-01

The GEOGLAM Crop Monitor's Crop Assessment Tool was released in August 2013 in support of the GEOGLAM Crop Monitor's objective to develop transparent, timely crop condition assessments in primary agricultural production areas, highlighting potential hotspots of stress/bumper crops. The Crop Assessment Tool allows users to view satellite derived products, best available crop masks, and crop calendars (created in collaboration with GEOGLAM Crop Monitor partners), then in turn submit crop assessment entries detailing the crop's condition, drivers, impacts, trends, and other information. Although the Crop Assessment Tool was originally intended to collect data on major crop production at the global scale, the types of data collected are also relevant to the food security and rangelands monitoring communities. In line with the GEOGLAM Countries at Risk philosophy of "foster[ing] the coordination of product delivery and capacity building efforts for national and regional organizations, and the development of harmonized methods and tools", a modified version of the Crop Assessment Tool is being developed for the USAID Famine Early Warning Systems Network (FEWS NET). As a member of the Countries at Risk component of GEOGLAM, FEWS NET provides agricultural monitoring, timely food security assessments, and early warnings of potential significant food shortages focusing specifically on countries at risk of food security emergencies. While the FEWS NET adaptation of the Crop Assessment Tool focuses on crop production in the context of food security rather than large scale production, the data collected is nearly identical to the data collected by the Crop Monitor. If combined, the countries monitored by FEWS NET and GEOGLAM Crop Monitor would encompass over 90 countries representing the most important regions for crop production and food security.

Estimating crop net primary production using inventory data and MODIS-derived parameters

Energy Technology Data Exchange (ETDEWEB)

Bandaru, Varaprasad; West, Tristram O.; Ricciuto, Daniel M.; Izaurralde, Roberto C.

2013-06-03

National estimates of spatially-resolved cropland net primary production (NPP) are needed for diagnostic and prognostic modeling of carbon sources, sinks, and net carbon flux. Cropland NPP estimates that correspond with existing cropland cover maps are needed to drive biogeochemical models at the local scale and over national and continental extents. Existing satellite-based NPP products tend to underestimate NPP on croplands. A new Agricultural Inventory-based Light Use Efficiency (AgI-LUE) framework was developed to estimate individual crop biophysical parameters for use in estimating crop-specific NPP. The method is documented here and evaluated for corn and soybean crops in Iowa and Illinois in years 2006 and 2007. The method includes a crop-specific enhanced vegetation index (EVI) from the Moderate Resolution Imaging Spectroradiometer (MODIS), shortwave radiation data estimated using Mountain Climate Simulator (MTCLIM) algorithm and crop-specific LUE per county. The combined aforementioned variables were used to generate spatially-resolved, crop-specific NPP that correspond to the Cropland Data Layer (CDL) land cover product. The modeling framework represented well the gradient of NPP across Iowa and Illinois, and also well represented the difference in NPP between years 2006 and 2007. Average corn and soybean NPP from AgI-LUE was 980 g C m-2 yr-1 and 420 g C m-2 yr-1, respectively. This was 2.4 and 1.1 times higher, respectively, for corn and soybean compared to the MOD17A3 NPP product. Estimated gross primary productivity (GPP) derived from AgI-LUE were in close agreement with eddy flux tower estimates. The combination of new inputs and improved datasets enabled the development of spatially explicit and reliable NPP estimates for individual crops over large regional extents.

Molecular evolution of candidate genes for crop-related traits in sunflower (Helianthus annuus L.).

Science.gov (United States)

Mandel, Jennifer R; McAssey, Edward V; Nambeesan, Savithri; Garcia-Navarro, Elena; Burke, John M

2014-01-01

Evolutionary analyses aimed at detecting the molecular signature of selection during crop domestication and/or improvement can be used to identify genes or genomic regions of likely agronomic importance. Here, we describe the DNA sequence-based characterization of a pool of candidate genes for crop-related traits in sunflower. These genes, which were identified based on homology to genes of known effect in other study systems, were initially sequenced from a panel of improved lines. All genes that exhibited a paucity of sequence diversity, consistent with the possible effects of selection during the evolution of cultivated sunflower, were then sequenced from a panel of wild sunflower accessions an outgroup. These data enabled formal tests for the effects of selection in shaping sequence diversity at these loci. When selection was detected, we further sequenced these genes from a panel of primitive landraces, thereby allowing us to investigate the likely timing of selection (i.e., domestication vs. improvement). We ultimately identified seven genes that exhibited the signature of positive selection during either domestication or improvement. Genetic mapping of a subset of these genes revealed co-localization between candidates for genes involved in the determination of flowering time, seed germination, plant growth/development, and branching and QTL that were previously identified for these traits in cultivated × wild sunflower mapping populations.

MAFF overview - the present policy on energy crops, the effect of GATT and CAP

International Nuclear Information System (INIS)

Thomas, Richard

1992-01-01

This item outlines current United Kingdom government policy on energy crops. A representative of the Ministry of Agriculture, Fisheries and Food describes the effect of current international trade agreement negotiations on policy on energy crops, particularly cereals and oilseeds. The success of biofuels is thought to depend chiefly on the prevailing fiscal climate. (UK)

Improvement of pulse crops through induced mutations: Reconstruction of plant type

International Nuclear Information System (INIS)

Rao, C.H.; Tickoo, J.L.; Ram, H.; Jain, H.K.

1975-01-01

Many species of grain legumes, because of their cultivation under marginal conditions for centuries, have retained a number of semi-wild characteristics, such as a bushy and spreading growth, which contribute to their adaptability but reduce their yields. The observations presented here indicate that induced mutations may prove effective in generating new plant-types in these crops, which are marked by an improvement in the harvest index and which will show a response to increased plant densities. The present report describes observations on the M 2 progenies of pigeon pea and mung bean on which work has been initiated. (author)

Sex and age data from cropping of Buffalo Syncerus caffer in the Kruger National Park

Directory of Open Access Journals (Sweden)

D.R Mason

1984-12-01

Full Text Available Sex and age classifications of buffalo cropped in the Kruger National Park suggest that cropping is biased towards females, and prime breeding individuals of both sexes are apparently under-represented. The implications are discussed in relation to buffalo social organisation and comparative data on population structure.

Lentinula edodes based GIS mapping, biometabolites and antiinflamatory activity of wild edible mushrooms

Science.gov (United States)

Khaund, Polashree; Joshi, S R

2016-03-01

The biodiversity rich state of Meghalaya, India located in the realms of mega-biodiversity hotspots, is home to numerous species of wild edible macrofungi that are used extensively by the mycophillic ethnic population, as a part of their traditional cuisine and medicine systems. However, habitat loss, due to deforestation and climate change, is destroying the natural population of these mushrooms, depleting their availability to the local communities. In the present investigation, a GIS guided habitat search, using Lentinula edodes as a representative species, was used in mapping the habitats of wild edible macrofungi of the study region. Sampling of around 4 000 specimens per distinct morphological type available in the traditional markets and “sacred grove” forests indicated presence of ten common genera, belonging to nine different families of wild edible mushrooms. Nutritional profiling of the representative species Lentinula edodes was carried out by evaluation of its moisture, total fat, crude protein and carbohydrates contents by standard methods. Similarly, bioactive components determination was performed by estimation of total phenols, flavonoids, ascorbic acid, β-carotene and lycopenes. Bioactivity of the mushrooms extracts was studied using the DPPH radical scavenging and Human Red Blood Cell (HRBC) membrane stabilization assays. The present investigation successfully attempted to explore remote sensing technologies and GIS (Geographic Information System) based system to predict the natural habitats of wild edible mushrooms of Meghalaya, India which we believe will lead to the generation of a mushroom specific non-wood forest resource mapping system in the near future. Results of nutritional profiling and biological activity studies on the representative species of wild edible mushrooms from the studied region revealed that it is a rich source of essential nutrients and antioxidants.

75 FR 15603 - Common Crop Insurance Regulations; Florida Avocado Crop Insurance Provisions

Science.gov (United States)

2010-03-30

... to: (1) Theft; or (2) Inability to market the avocados for any reason other than actual physical... Crop Insurance Regulations; Florida Avocado Crop Insurance Provisions AGENCY: Federal Crop Insurance... Common Crop Insurance Regulations; Florida Avocado Crop Insurance Provisions to convert the Florida...

4F CROPS: Future crops for food, feed, fibre and fuel

Energy Technology Data Exchange (ETDEWEB)

E. Alexopoulou, E.; Christou, M.; Eleftheriadis, I. [Center for Renewable Energy Sources (CRES), Pikermi Attikis (Greece)

2008-07-01

As different sectors - food, feed, fiber, and fuels - compete for land, the yielding potential of the future non-food crops has to be as efficient as possible in order to minimize the competition for land. The main objective of 4F CROPS project is to survey and analyze all the parameters that will play an important role in successful non-food cropping systems in the agriculture of EU27 alongside the existing food crop systems. The work will start with the prediction of the future land use in short term (2020) and long term (2030), taking under consideration restrict factors for agriculture and the market demand for non-food crops. The cropping possibilities based on regional potential levels, ecology and climate will be determined. This group of non-food crops will be then subjected to a comparative cost analysis with conventional crops for the same time framework. Socio-economic impacts, like farmers' income, rural development, public development, and public acceptance will analyze. Then environmental implications will be assessed compared to their respective conventional products (fossil energy, conversional materials). Several environmental impacts will be assessed like soil quality and soil erosion, air quality and climate change, water issues, biodiversity and landscape by using LCA and EIE methods. The regulatory framework of the non-food crops will be considered including existing policies, co-existence and safety measures when the crops used for both food and non-food crops. All the collected information will be used for the formation of scenarios for successful non-food cropping alongside food cropping systems answering whether a completive bioeconomy is a viable option for EU27.

Do green manures as winter cover crops impact the weediness and crop yield in an organic crop rotation?

OpenAIRE

Madsen, Helena; Talgre, Liina; Eremeev, Viacheslav; Alaru, Maarika; Kauer, Karin; Luik, Anne

2016-01-01

The effects of different winter cover crops and their combination with composted cattle manure on weeds and crop yields were investigated within a five-field crop rotation (barley undersown with red clover, red clover, winter wheat, pea, potato) in three organic cropping systems. The control system (Org 0) followed the rotation. In organic systems Org I and Org II the winter cover crops were used as follows: ryegrass (Lolium perenne L. in 2011/2012) and a mixture of winter oilseed-rape (Brass...

Crop yield network and its response to changes in climate system

Science.gov (United States)

Yokozawa, M.

2013-12-01

Crop failure (reduction in crop yield) due to extreme weather and climate change could lead to unstable food supply, reflecting the recent globalization in world agricultural production. Specifically, in several major production countries producing large amount of main cereal crops, wheat, maize, soybean and rice, abrupt crop failures in wide area are significantly serious for world food supply system. We examined the simultaneous changes in crop yield in USA, China and Brazil, in terms of the changes in climate system such as El Nino, La nina and so on. In this study, we defined a crop yield networks, which represent the correlation between yearly changes in crop yields and climate resources during the crop growing season in two regions. The climate resources during the crop growing season represents here the average temperature and the accumulated precipitation during the crop growing season of a target crop. As climate data, we used a reanalysis climate data JRA-25 (Japan Meteorological Agency). The yearly changes in crop yields are based on a gridded crop productivity database with a resolution of 1.125 degree in latitude/longitude (Iizumi et al. 2013). It is constructed from the agriculture statistics issued by local administrative bureau in each country, which covers the period during 1982 to 2006 (25 years). For the regions being lack of data, the data was interpolated referring to NPP values estimated by satellite data. Crop yield network is constructed as follows: (1) let DY(i,y) be negative difference in crop yield of year y from the trend yield at grid i; (2) define the correlation of the differences Cij(y) = DY(i, y) DY(j, y); (3) if Cij(y) > Q, then grids i and j are mutually linked for a threshold value Q. Links between grids make a crop yield network. It is here noted that only negative differences are taken into account because we focused on the lean year cases (i.e. yields of both grids were lower than those in the long-term trend). The arrays of

Prevalence of giant kidney worm (Dioctophyma renale) in wild mink (Mustela vison) in Minnesota

Science.gov (United States)

Mech, L. David; Tracy, Shawn P.

2001-01-01

Of 138 wild mink (Mustela vison) from eastern Minnesota, 27% contained Dioctophyma renale, primarily in the right kidney. No significant difference between prevalence in adult male and immature male mink was found, nor between the prevalence in males versus female mink. Thirteen worms were found in one male mink, representing the highest documented infection intensity of a single wild mink.

76 FR 71276 - Common Crop Insurance Regulations; Pecan Revenue Crop Insurance Provisions

Science.gov (United States)

2011-11-17

...-0008] RIN 0563-AC35 Common Crop Insurance Regulations; Pecan Revenue Crop Insurance Provisions AGENCY... Corporation (FCIC) proposes to amend the Common Crop Insurance Regulations, Pecan Revenue Crop Insurance... Regulations (7 CFR part 457) by revising Sec. 457.167 Pecan Revenue Crop Insurance Provisions, to be effective...

Forecasting wheat and barley crop production in arid and semi-arid regions using remotely sensed primary productivity and crop phenology: A case study in Iraq.

Science.gov (United States)

Qader, Sarchil Hama; Dash, Jadunandan; Atkinson, Peter M

2018-02-01

Crop production and yield estimation using remotely sensed data have been studied widely, but such information is generally scarce in arid and semi-arid regions. In these regions, inter-annual variation in climatic factors (such as rainfall) combined with anthropogenic factors (such as civil war) pose major risks to food security. Thus, an operational crop production estimation and forecasting system is required to help decision-makers to make early estimates of potential food availability. Data from NASA's MODIS with official crop statistics were combined to develop an empirical regression-based model to forecast winter wheat and barley production in Iraq. The study explores remotely sensed indices representing crop productivity over the crop growing season to find the optimal correlation with crop production. The potential of three different remotely sensed indices, and information related to the phenology of crops, for forecasting crop production at the governorate level was tested and their results were validated using the leave-one-year-out approach. Despite testing several methodological approaches, and extensive spatio-temporal analysis, this paper depicts the difficulty in estimating crop yield on an annual base using current satellite low-resolution data. However, more precise estimates of crop production were possible. The result of the current research implies that the date of the maximum vegetation index (VI) offered the most accurate forecast of crop production with an average R 2 =0.70 compared to the date of MODIS EVI (Avg R 2 =0.68) and a NPP (Avg R 2 =0.66). When winter wheat and barley production were forecasted using NDVI, EVI and NPP and compared to official statistics, the relative error ranged from -20 to 20%, -45 to 28% and -48 to 22%, respectively. The research indicated that remotely sensed indices could characterize and forecast crop production more accurately than simple cropping area, which was treated as a null model against which to

Parasitic helminths of the digestive system of wild boars bred in captivity.

Science.gov (United States)

da Silva, Diego Silva; Müller, Gertrud

2013-01-01

This study aimed to identify the parasites that inhabit the digestive system of Sus scrofa scrofa from a commercial breeding facility in southern Brazil, and reports the first occurrence of Trichostrongylus colubriformis in wild boars. The gastrointestinal tracts of 40 wild boars from a commercial breeding facility were collected and individualized during slaughter in a cold-storage slaughterhouse. Out of this total, 87.5% were parasitized by the helminths Ascaris suum, Trichostrongylus colubriformis, Oesophagostomum dentatum and Trichuris suis. T. colubriformis presented a prevalence of 45%, mean intensity of 28.4 and mean abundance of 12.8. The data from this study showed that T. colubriformis not only has a capacity to develop in the small intestines of wild boars, but also adapts well to animals raised in captivity, thus representing a possible cause of economic loss in commercial wild boar farming.

Global scale climate-crop yield relationships and the impacts of recent warming

International Nuclear Information System (INIS)

Lobell, David B; Field, Christopher B

2007-01-01

Changes in the global production of major crops are important drivers of food prices, food security and land use decisions. Average global yields for these commodities are determined by the performance of crops in millions of fields distributed across a range of management, soil and climate regimes. Despite the complexity of global food supply, here we show that simple measures of growing season temperatures and precipitation-spatial averages based on the locations of each crop-explain ∼30% or more of year-to-year variations in global average yields for the world's six most widely grown crops. For wheat, maize and barley, there is a clearly negative response of global yields to increased temperatures. Based on these sensitivities and observed climate trends, we estimate that warming since 1981 has resulted in annual combined losses of these three crops representing roughly 40 Mt or $5 billion per year, as of 2002. While these impacts are small relative to the technological yield gains over the same period, the results demonstrate already occurring negative impacts of climate trends on crop yields at the global scale

Draft genome sequence of Cicer reticulatum L., the wild progenitor of chickpea provides a resource for agronomic trait improvement.

Science.gov (United States)

Gupta, Sonal; Nawaz, Kashif; Parween, Sabiha; Roy, Riti; Sahu, Kamlesh; Kumar Pole, Anil; Khandal, Hitaishi; Srivastava, Rishi; Kumar Parida, Swarup; Chattopadhyay, Debasis

2017-02-01

Cicer reticulatum L. is the wild progenitor of the fourth most important legume crop chickpea (C. arietinum L.). We assembled short-read sequences into 416 Mb draft genome of C. reticulatum and anchored 78% (327 Mb) of this assembly to eight linkage groups. Genome annotation predicted 25,680 protein-coding genes covering more than 90% of predicted gene space. The genome assembly shared a substantial synteny and conservation of gene orders with the genome of the model legume Medicago truncatula. Resistance gene homologs of wild and domesticated chickpeas showed high sequence homology and conserved synteny. Comparison of gene sequences and nucleotide diversity using 66 wild and domesticated chickpea accessions suggested that the desi type chickpea was genetically closer to the wild species than the kabuli type. Comparative analyses predicted gene flow between the wild and the cultivated species during domestication. Molecular diversity and population genetic structure determination using 15,096 genome-wide single nucleotide polymorphisms revealed an admixed domestication pattern among cultivated (desi and kabuli) and wild chickpea accessions belonging to three population groups reflecting significant influence of parentage or geographical origin for their cultivar-specific population classification. The assembly and the polymorphic sequence resources presented here would facilitate the study of chickpea domestication and targeted use of wild Cicer germplasms for agronomic trait improvement in chickpea. © The Author 2016. Published by Oxford University Press on behalf of Kazusa DNA Research Institute.

First reports of ectoparasites collected from wild-caught exotic reptiles in Florida.

Science.gov (United States)

Corn, Joseph L; Mertins, James W; Hanson, Britta; Snow, Skip

2011-01-01

We collected ectoparasites from 27 of 51 wild-caught, free-ranging exotic reptiles examined in Florida from 2003 to 2008. Sampled animals represented eight species, five of which yielded ectoparasites. Reported new parasite distribution records for the United States include the following: the first collection of the African tick Amblyomma latum (Koch) from a wild-caught animal [ball python, Python regius (Shaw)] in the United States; the first collection of the lizard scale mite Hirstiella stamii (Jack) from any wild-caught animal [green iguana, Iguana iguana (L.)]; and the first collection of the lizard scale mite Geckobia hemidactyli (Lawrence) in the continental United States from a wild-caught tropical house gecko, Hemidactylus mabouia (Moreau de Jonnès). We also report the first collections of the Neotropical ticks Amblyomma rotundatum (Koch) and Amblyomma dissimile (Koch) from wild-caught Burmese pythons, Python molurus bivittatus (Kuhl); the first collections of A. dissimile from a wild-caught African savannah monitor, Varanus exanthematicus (Bosc); and from wild-caught green iguanas in the United States; and the first collections of the native chiggers Eutrombicula splendens (Ewing) and Eutrombicula cinnabaris (Ewing) from wild-caught Burmese pythons. These reports may only suggest the diversity of reptile ectoparasites introduced and established in Florida and the new host-parasite relationships that have developed among exotic and native ectoparasites and established exotic reptiles.

Honey Bee Viruses in Wild Bees: Viral Prevalence, Loads, and Experimental Inoculation

Science.gov (United States)

Dolezal, Adam G.; Hendrix, Stephen D.; Scavo, Nicole A.; Carrillo-Tripp, Jimena; Harris, Mary A.; Wheelock, M. Joseph; O’Neal, Matthew E.; Toth, Amy L.

2016-01-01

Evidence of inter-species pathogen transmission from managed to wild bees has sparked concern that emerging diseases could be causing or exacerbating wild bee declines. While some pathogens, like RNA viruses, have been found in pollen and wild bees, the threat these viruses pose to wild bees is largely unknown. Here, we tested 169 bees, representing 4 families and 8 genera, for five common honey bee (Apis mellifera) viruses, finding that more than 80% of wild bees harbored at least one virus. We also quantified virus titers in these bees, providing, for the first time, an assessment of viral load in a broad spectrum of wild bees. Although virus detection was very common, virus levels in the wild bees were minimal—similar to or lower than foraging honey bees and substantially lower than honey bees collected from hives. Furthermore, when we experimentally inoculated adults of two different bee species (Megachile rotundata and Colletes inaequalis) with a mixture of common viruses that is lethal to honey bees, we saw no effect on short term survival. Overall, we found that honey bee RNA viruses can be commonly detected at low levels in many wild bee species, but we found no evidence that these pathogens cause elevated short-term mortality effects. However, more work on these viruses is greatly needed to assess effects on additional bee species and life stages. PMID:27832169

Honey Bee Viruses in Wild Bees: Viral Prevalence, Loads, and Experimental Inoculation.

Science.gov (United States)

Dolezal, Adam G; Hendrix, Stephen D; Scavo, Nicole A; Carrillo-Tripp, Jimena; Harris, Mary A; Wheelock, M Joseph; O'Neal, Matthew E; Toth, Amy L

2016-01-01

Evidence of inter-species pathogen transmission from managed to wild bees has sparked concern that emerging diseases could be causing or exacerbating wild bee declines. While some pathogens, like RNA viruses, have been found in pollen and wild bees, the threat these viruses pose to wild bees is largely unknown. Here, we tested 169 bees, representing 4 families and 8 genera, for five common honey bee (Apis mellifera) viruses, finding that more than 80% of wild bees harbored at least one virus. We also quantified virus titers in these bees, providing, for the first time, an assessment of viral load in a broad spectrum of wild bees. Although virus detection was very common, virus levels in the wild bees were minimal-similar to or lower than foraging honey bees and substantially lower than honey bees collected from hives. Furthermore, when we experimentally inoculated adults of two different bee species (Megachile rotundata and Colletes inaequalis) with a mixture of common viruses that is lethal to honey bees, we saw no effect on short term survival. Overall, we found that honey bee RNA viruses can be commonly detected at low levels in many wild bee species, but we found no evidence that these pathogens cause elevated short-term mortality effects. However, more work on these viruses is greatly needed to assess effects on additional bee species and life stages.

Spatiotemporal trends in Canadian domestic wild boar production and habitat predict wild pig distribution

DEFF Research Database (Denmark)

Michel, Nicole; Laforge, Michel; van Beest, Floris

2017-01-01

eradication of wild pigs is rarely feasible after establishment over large areas, effective management will depend on strengthening regulations and enforcement of containment practices for Canadian domestic wild boar farms. Initiation of coordinated provincial and federal efforts to implement population...... wild boar and test the propagule pressure hypothesis to improve predictive ability of an existing habitat-based model of wild pigs. We reviewed spatiotemporal patterns in domestic wild boar production across ten Canadian provinces during 1991–2011 and evaluated the ability of wild boar farm...... distribution to improve predictive models of wild pig occurrence using a resource selection probability function for wild pigs in Saskatchewan. Domestic wild boar production in Canada increased from 1991 to 2001 followed by sharp declines in all provinces. The distribution of domestic wild boar farms in 2006...

Emerging fungal pathogen Ophidiomyces ophiodiicola in wild European snakes

Science.gov (United States)

Franklinos, Lydia H. V.; Lorch, Jeffrey M.; Bohuski, Elizabeth A.; Rodriguez-Ramos Fernandez, Julia; Wright, Owen; Fitzpatrick, Liam; Petrovan, Silviu; Durrant, Chris; Linton, Chris; Baláž, Vojtech; Cunningham, Andrew A; Lawson, Becki

2017-01-01

Snake fungal disease (SFD) is an emerging disease of conservation concern in eastern North America. Ophidiomyces ophiodiicola, the causative agent of SFD, has been isolated from over 30 species of wild snakes from six families in North America. Whilst O. ophiodiicola has been isolated from captive snakes outside North America, the pathogen has not been reported from wild snakes elsewhere. We screened 33 carcasses and 303 moulted skins from wild snakes collected from 2010–2016 in Great Britain and the Czech Republic for the presence of macroscopic skin lesions and O. ophiodiicola. The fungus was detected using real-time PCR in 26 (8.6%) specimens across the period of collection. Follow up culture and histopathologic analyses confirmed that both O. ophiodiicola and SFD occur in wild European snakes. Although skin lesions were mild in most cases, in some snakes they were severe and were considered likely to have contributed to mortality. Culture characterisations demonstrated that European isolates grew more slowly than those from the United States, and phylogenetic analyses indicated that isolates from European wild snakes reside in a clade distinct from the North American isolates examined. These genetic and phenotypic differences indicate that the European isolates represent novel strains of O. ophiodiicola. Further work is required to understand the individual and population level impact of this pathogen in Europe.

Impacts of climate change on cropping patterns in a tropical, sub-humid watershed

Science.gov (United States)

Zwart, Sander J.; Hein, Lars

2018-01-01

In recent decades, there have been substantial increases in crop production in sub-Saharan Africa (SSA) as a result of higher yields, increased cropping intensity, expansion of irrigated cropping systems, and rainfed cropland expansion. Yet, to date much of the research focus of the impact of climate change on crop production in the coming decades has been on crop yield responses. In this study, we analyse the impact of climate change on the potential for increasing rainfed cropping intensity through sequential cropping and irrigation expansion in central Benin. Our approach combines hydrological modelling and scenario analysis involving two Representative Concentration Pathways (RCPs), two water-use scenarios for the watershed based on the Shared Socioeconomic Pathways (SSPs), and environmental water requirements leading to sustained streamflow. Our analyses show that in Benin, warmer temperatures will severely limit crop production increases achieved through the expansion of sequential cropping. Depending on the climate change scenario, between 50% and 95% of cultivated areas that can currently support sequential cropping or will need to revert to single cropping. The results also show that the irrigation potential of the watershed will be at least halved by mid-century in all scenario combinations. Given the urgent need to increase crop production to meet the demands of a growing population in SSA, our study outlines challenges and the need for planned development that need to be overcome to improve food security in the coming decades. PMID:29513753

Climate Change Impacts on Crop Production in Nigeria

Science.gov (United States)

Mereu, V.; Gallo, A.; Carboni, G.; Spano, D.

2011-12-01

The agricultural sector in Nigeria is particularly important for the country's food security, natural resources, and growth agenda. The cultivable areas comprise more than 70% of the total area; however, the cultivated area is about the 35% of the total area. The most important components in the food basket of the nation are cereals and tubers, which include rice, maize, corn, millet, sorghum, yam, and cassava. These crops represent about 80% of the total agricultural product in Nigeria (from NPAFS). The major crops grown in the country can be divided into food crops (produced for consumption) and export products. Despite the importance of the export crops, the primary policy of agriculture is to make Nigeria self-sufficient in its food and fiber requirements. The projected impacts of future climate change on agriculture and water resources are expected to be adverse and extensive in these area. This implies the need for actions and measures to adapt to climate change impacts, and especially as they affect agriculture, the primary sector for Nigerian economy. In the framework of the Project Climate Risk Analysis in Nigeria (founded by World Bank Contract n.7157826), a study was made to assess the potential impact of climate change on the main crops that characterize Nigerian agriculture. The DSSAT-CSM (Decision Support System for Agrotechnology Transfer - Cropping System Model) software, version 4.5 was used for the analysis. Crop simulation models included in DSSAT are tools that simulate physiological processes of crop growth, development and production by combining genetic crop characteristics and environmental (soil and weather) conditions. For each selected crop, the models were calibrated to evaluate climate change impacts on crop production. The climate data used for the analysis are derived by the Regional Circulation Model COSMO-CLM, from 1971 to 2065, at 8 km of spatial resolution. The RCM model output was "perturbed" with 10 Global Climate Models to have

Relay cropping as a sustainable approach: problems and opportunities for sustainable crop production.

Science.gov (United States)

Tanveer, Mohsin; Anjum, Shakeel Ahmad; Hussain, Saddam; Cerdà, Artemi; Ashraf, Umair

2017-03-01

Climate change, soil degradation, and depletion of natural resources are becoming the most prominent challenges for crop productivity and environmental sustainability in modern agriculture. In the scenario of conventional farming system, limited chances are available to cope with these issues. Relay cropping is a method of multiple cropping where one crop is seeded into standing second crop well before harvesting of second crop. Relay cropping may solve a number of conflicts such as inefficient use of available resources, controversies in sowing time, fertilizer application, and soil degradation. Relay cropping is a complex suite of different resource-efficient technologies, which possesses the capability to improve soil quality, to increase net return, to increase land equivalent ratio, and to control the weeds and pest infestation. The current review emphasized relay cropping as a tool for crop diversification and environmental sustainability with special focus on soil. Briefly, benefits, constraints, and opportunities of relay cropping keeping the goals of higher crop productivity and sustainability have also been discussed in this review. The research and knowledge gap in relay cropping was also highlighted in order to guide the further studies in future.

Crop residue management in arable cropping systems under a temperate climate. Part 2: Soil physical properties and crop production. A review

Directory of Open Access Journals (Sweden)

Hiel, MP.

2016-01-01

Full Text Available Introduction. Residues of previous crops provide a valuable amount of organic matter that can be used either to restore soil fertility or for external use. A better understanding of the impact of crop residue management on the soil-water-plant system is needed in order to manage agricultural land sustainably. This review focuses on soil physical aspects related to crop residue management, and specifically on the link between soil structure and hydraulic properties and its impact on crop production. Literature. Conservation practices, including crop residue retention and non-conventional tillage, can enhance soil health by improving aggregate stability. In this case, water infiltration is facilitated, resulting in an increase in plant water availability. Conservation practices, however, do not systematically lead to higher water availability for the plant. The influence of crop residue management on crop production is still unclear; in some cases, crop production is enhanced by residue retention, but in others crop residues can reduce crop yield. Conclusions. In this review we discuss the diverse and contrasting effects of crop residue management on soil physical properties and crop production under a temperate climate. The review highlights the importance of environmental factors such as soil type and local climatic conditions, highlighting the need to perform field studies on crop residue management and relate them to specific pedo-climatic contexts.

Occurrence of Edwardsiella tarda in wild European eels Anguilla anguilla from Mediterranean Spain.

Science.gov (United States)

Alcaide, Elena; Herraiz, Sonia; Esteve, Consuelo

2006-11-21

Pure cultures of Edwarsiella tarda were isolated from body ulcers and internal organs of wild European eels caught in a Mediterranean freshwater coastal lagoon (Albufera Lake, Valencia, Spain) over a 1 yr period. Overall, the E. tarda isolation rate from wild eels was 9%, but this increased to 22.8% in diseased individuals. All 22 E. tarda isolates belonged to the 'wild-type' biogroup of the species and were virulent for eels (lethal dose that kills 50% of exposed individuals [LD50 dose]: 10(4.85) to 10(6.83) CFU ind.(-1)), and therefore represented the aetiological agent of the haemorrhagic disease observed in wild European eels. The E. tarda isolates and E. tarda CECT 894T type strain were biochemically and serologically related and resistant to macrolides, antifolates, and glycopeptides, but only the isolates from wild eels were resistant to clindamicyn. This study is the first description of edwardsiellosis in a wild European eel population, and alerts us to the presence of E. tarda in natural wetland environments in Mediterranean Europe.

GEOGLAM Crop Monitor Assessment Tool: Developing Monthly Crop Condition Assessments

Science.gov (United States)

McGaughey, K.; Becker Reshef, I.; Barker, B.; Humber, M. L.; Nordling, J.; Justice, C. O.; Deshayes, M.

2014-12-01

The Group on Earth Observations (GEO) developed the Global Agricultural Monitoring initiative (GEOGLAM) to improve existing agricultural information through a network of international partnerships, data sharing, and operational research. This presentation will discuss the Crop Monitor component of GEOGLAM, which provides the Agricultural Market Information System (AMIS) with an international, multi-source, and transparent consensus assessment of crop growing conditions, status, and agro-climatic conditions likely to impact global production. This activity covers the four primary crop types (wheat, maize, rice, and soybean) within the main agricultural producing regions of the AMIS countries. These assessments have been produced operationally since September 2013 and are published in the AMIS Market Monitor Bulletin. The Crop Monitor reports provide cartographic and textual summaries of crop conditions as of the 28th of each month, according to crop type. This presentation will focus on the building of international networks, data collection, and data dissemination.

Predicting optimum crop designs using crop models and seasonal climate forecasts.

Science.gov (United States)

Rodriguez, D; de Voil, P; Hudson, D; Brown, J N; Hayman, P; Marrou, H; Meinke, H

2018-02-02

Expected increases in food demand and the need to limit the incorporation of new lands into agriculture to curtail emissions, highlight the urgency to bridge productivity gaps, increase farmers profits and manage risks in dryland cropping. A way to bridge those gaps is to identify optimum combination of genetics (G), and agronomic managements (M) i.e. crop designs (GxM), for the prevailing and expected growing environment (E). Our understanding of crop stress physiology indicates that in hindsight, those optimum crop designs should be known, while the main problem is to predict relevant attributes of the E, at the time of sowing, so that optimum GxM combinations could be informed. Here we test our capacity to inform that "hindsight", by linking a tested crop model (APSIM) with a skillful seasonal climate forecasting system, to answer "What is the value of the skill in seasonal climate forecasting, to inform crop designs?" Results showed that the GCM POAMA-2 was reliable and skillful, and that when linked with APSIM, optimum crop designs could be informed. We conclude that reliable and skillful GCMs that are easily interfaced with crop simulation models, can be used to inform optimum crop designs, increase farmers profits and reduce risks.

Agrobiodiversity and genetic erosion of crop varieties and plant resources in the Central Great Caucasus

Directory of Open Access Journals (Sweden)

Maia Akhalkatsi

2017-03-01

Full Text Available Kazbegi Municipality is located in the Central Great Caucasus at an altitude between 1250 and 5047 m a.s.l. Agriculture of this area is extreme internal variability and complexity, with a multiplicity of highly localized providing the habitats and agricultural lands for much genetic erosion of crop varieties, animals, plants, fungi, and other life forms for wild plant resources. Historically, Kazbegi producers had begun cultivating the land to prepare for planting in of distribution local varieties of wheat, barley, rye, oats, etc. In the only cereals, legumes, herbs and some fruits are cultivated in alpine zone as the upper limit till the location of 2160 m a.s.l. Genetic erosion has been determined historically of aboriginal crops from sheep and cattle grazing problem and reached extreme levels from 1970s in Kazbegi Municipality and causes a problem to maintain agriculture. Plant resources remained in forests and subalpine grasslands and shrub lands. The problems of these materials are habitat degradation by disturbance in many forest types with destroyed and burned. Tree seedlings are grazing by animals and forest is not restoring naturally. Forest planting is good relation for restoration of plant wild species resources. Investigation on exchange on mountain agriculture and plant resources will now be rapidly accelerated in the vital interests of mountain communities.

Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense.

Science.gov (United States)

Hu, Guanjing; Koh, Jin; Yoo, Mi-Jeong; Grupp, Kara; Chen, Sixue; Wendel, Jonathan F

2013-10-01

Pima cotton (Gossypium barbadense) is widely cultivated because of its long, strong seed trichomes ('fibers') used for premium textiles. These agronomically advanced fibers were derived following domestication and thousands of years of human-mediated crop improvement. To gain an insight into fiber development and evolution, we conducted comparative proteomic and transcriptomic profiling of developing fiber from an elite cultivar and a wild accession. Analyses using isobaric tag for relative and absolute quantification (iTRAQ) LC-MS/MS technology identified 1317 proteins in fiber. Of these, 205 were differentially expressed across developmental stages, and 190 showed differential expression between wild and cultivated forms, 14.4% of the proteome sampled. Human selection may have shifted the timing of developmental modules, such that some occur earlier in domesticated than in wild cotton. A novel approach was used to detect possible biased expression of homoeologous copies of proteins. Results indicate a significant partitioning of duplicate gene expression at the protein level, but an approximately equal degree of bias for each of the two constituent genomes of allopolyploid cotton. Our results demonstrate the power of complementary transcriptomic and proteomic approaches for the study of the domestication process. They also provide a rich database for mining for functional analyses of cotton improvement or evolution. © 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.

Insect pollinated crops, insect pollinators and US agriculture: trend analysis of aggregate data for the period 1992-2009.

Directory of Open Access Journals (Sweden)

Nicholas W Calderone

Full Text Available In the US, the cultivated area (hectares and production (tonnes of crops that require or benefit from insect pollination (directly dependent crops: apples, almonds, blueberries, cucurbits, etc. increased from 1992, the first year in this study, through 1999 and continued near those levels through 2009; aggregate yield (tonnes/hectare remained unchanged. The value of directly dependent crops attributed to all insect pollination (2009 USD decreased from $14.29 billion in 1996, the first year for value data in this study, to $10.69 billion in 2001, but increased thereafter, reaching $15.12 billion by 2009. The values attributed to honey bees and non-Apis pollinators followed similar patterns, reaching $11.68 billion and $3.44 billion, respectively, by 2009. The cultivated area of crops grown from seeds resulting from insect pollination (indirectly dependent crops: legume hays, carrots, onions, etc. was stable from 1992 through 1999, but has since declined. Production of those crops also declined, albeit not as rapidly as the decline in cultivated area; this asymmetry was due to increases in aggregate yield. The value of indirectly dependent crops attributed to insect pollination declined from $15.45 billion in 1996 to $12.00 billion in 2004, but has since trended upward. The value of indirectly dependent crops attributed to honey bees and non-Apis pollinators, exclusive of alfalfa leafcutter bees, has declined since 1996 to $5.39 billion and $1.15 billion, respectively in 2009. The value of alfalfa hay attributed to alfalfa leafcutter bees ranged between $4.99 and $7.04 billion. Trend analysis demonstrates that US producers have a continued and significant need for insect pollinators and that a diminution in managed or wild pollinator populations could seriously threaten the continued production of insect pollinated crops and crops grown from seeds resulting from insect pollination.

Tradeoffs between vigor and yield for crops grown under different management systems

Science.gov (United States)

Simic Milas, Anita; Keller Vincent, Robert; Romanko, Matthew; Feitl, Melina; Rupasinghe, Prabha

2016-04-01

Remote sensing can provide an effective means for rapid and non-destructive monitoring of crop status and biochemistry. Monitoring pattern of traditional vigor algorithms generated from Landsat 8 OLI satellite data represents a robust method that can be widely used to differentiate the status of crops, as well as to monitor nutrient uptake functionality of differently treated seeds grown under different managements. This study considers 24 factorial parcels of winter wheat in 2013, corn in 2014, and soybeans in 2015, grown under four different types of agricultural management. The parcels are located at the Kellogg Biological Station, Long-Term Ecological Research site in the State of Michigan USA. At maturity, the organic crops exhibit significantly higher vigor and significantly lower yield than conventionally managed crops under different treatments. While organic crops invest in their metabolism at the expense of their yield, the conventional crops manage to increase their yield at the expense of their vigor. Landsat 8 OLI is capable of 1) differentiating the biochemical status of crops under different treatments at maturity, and 2) monitoring the tradeoff between crop yield and vigor that can be controlled by the seed treatments and proper conventional applications, with the ultimate goal of increasing food yield and food availability, and 3) distinguishing between organic and conventionally treated crops. Timing, quantity and types of herbicide applications have a great impact on early and pre-harvest vigor, maturity and yield of conventionally treated crops. Satellite monitoring using Landsat 8 is an optimal tool for coordinating agricultural applications, soil practices and genetic coding of the crop to produce higher yield as well as have early crop maturity, desirable in northern climates.

Parasitic helminths of the digestive system of wild boars bred in captivity

Directory of Open Access Journals (Sweden)

Diego Silva da Silva

Full Text Available This study aimed to identify the parasites that inhabit the digestive system of Sus scrofa scrofa from a commercial breeding facility in southern Brazil, and reports the first occurrence of Trichostrongylus colubriformis in wild boars. The gastrointestinal tracts of 40 wild boars from a commercial breeding facility were collected and individualized during slaughter in a cold-storage slaughterhouse. Out of this total, 87.5% were parasitized by the helminths Ascaris suum,Trichostrongylus colubriformis, Oesophagostomum dentatum and Trichuris suis. T. colubriformis presented a prevalence of 45%, mean intensity of 28.4 and mean abundance of 12.8. The data from this study showed that T. colubriformis not only has a capacity to develop in the small intestines of wild boars, but also adapts well to animals raised in captivity, thus representing a possible cause of economic loss in commercial wild boar farming.

Molecular detection of Hepatozoon spp. in Brazilian and exotic wild carnivores.

Science.gov (United States)

André, M R; Adania, C H; Teixeira, R H F; Vargas, G H; Falcade, M; Sousa, L; Salles, A R; Allegretti, S M; Felippe, P A N; Machado, R Z

2010-10-11

Hepatozoon spp. are apicomplexan parasites that infect a wide variety of animals. The infection occurs through the ingestion of a hematophagous arthropod definitive host. Herein, we assessed the presence of Hepatozoon spp. in 165 captive wild felids and 100 captive wild canids using molecular techniques. We found that 6 felids (4 little spotted cats, 1 jaguarondi, and 1 puma) and 5 canids (2 bush dogs, 1 fox, 1 crab-eating fox, and 1 maned wolf) were positive for Hepatozoon spp. Hepatozoon spp. may be a potential pathogen and an opportunistic parasite in immunocompromised animals or if occurring in concomitant infections. Because most Brazilian wild felids and canids are endangered, knowing whether Hepatozoon infection represents a threat for these animals is crucial. Copyright 2010 Elsevier B.V. All rights reserved.

Spatiotemporal Dynamics of Whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) in Commercial Watermelon Crops.

Science.gov (United States)

Lima, Carlos H O; Sarmento, Renato A; Galdino, Tarcísio V S; Pereira, Poliana S; Silva, Joedna; Souza, Danival J; Dos Santos, Gil R; Costa, Thiago L; Picanço, Marcelo C

2018-04-16

Spatiotemporal dynamics studies of crop pests enable the determination of the colonization pattern and dispersion of these insects in the landscape. Geostatistics is an efficient tool for these studies: to determine the spatial distribution pattern of the pest in the crops and to make maps that represent this situation. Analysis of these maps across the development of plants can be used as a tool in precision agriculture programs. Watermelon, Citrullus lanatus (Thunb.) Matsum. and Nakai (Cucurbitales: Cucurbitaceae), is the second most consumed fruit in the world, and the whitefly Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) is one of the most important pests of this crop. Thus, the objective of this work was to determine the spatiotemporal distribution of B. tabaci in commercial watermelon crops using geostatistics. For 2 yr, we monitored adult whitefly densities in eight watermelon crops in a tropical climate region. The location of the samples and other crops in the landscape was georeferenced. Experimental data were submitted to geostatistical analysis. The colonization of B. tabaci had two patterns. In the first, the colonization started at the outermost parts of the crop. In the second, the insects occupied the whole area of the crop since the beginning of cultivation. The maximum distance between sites of watermelon crops in which spatial dependence of B. tabaci densities was observed was 19.69 m. The adult B. tabaci densities in the eight watermelon fields were positively correlated with rainfall and relative humidity, whereas wind speed negatively affected whiteflies population.

Molecular Investigation on the Presence of Hepatitis E Virus (HEV) in Wild Game in North-Western Italy.

Science.gov (United States)

Serracca, Laura; Battistini, Roberta; Rossini, Irene; Mignone, Walter; Peletto, Simone; Boin, Claudia; Pistone, Giancarlo; Ercolini, Riccardo; Ercolini, Carlo

2015-09-01

Meat products from HEV-infected reservoir animal species are capable of transmitting HEV to humans and represent a public health concern. Human HEV cases have been linked to the consumption of raw or undercooked pig liver sausages, pork, and game meats, such as wild boars and deer worldwide. Direct exposure to swine or wild game species might also represent a source of HEV transmission especially for veterinarians, hunters, or butchers. A limited amount of data is available on HEV prevalence in wild boars in Italy and no data are available for other wild game species intended for human consumption. In this study, the circulation of HEV in four different animal species hunted in north-western Italy was evaluated to gain insight into the infection levels and the genetic diversity of the virus in such animal populations. Liver samples of 372 wild boars, 30 roe deer, 47 European hares and 38 coypus were analyzed for HEV RNA by real-time RT-PCR; positive samples were then sequenced and submitted to phylogenetic analysis. HEV RNA was detected in the livers of 7/372 (1.9%) wild boars tested, while no sample was positive for roe deer, European hare, and coypu. Phylogenetic analysis showed that wild boar HEV sequences belonged to HEV subtypes 3e, 3c, and 3f. Our results indicate that HEV is circulating only in wild boar among the considered game species in north-western Italy and suggest a potential zoonotic risk related to handling and/or consumption of raw or undercooked meat and products made of the liver from this species.

Pesticide use within a pollinator-dependent crop has negative effects on the abundance and species richness of sweat bees, Lasioglossum spp., and on bumble bee colony growth.

Science.gov (United States)

Pesticides are implicated in current bee declines. Wild bees that nest or forage within agroecosystems may be exposed to numerous pesticides applied throughout their life cycles, with potential additive or synergistic effects. In pollinator-dependent crops, pesticides may reduce bee populations, cre...

Using the CLM Crop Model to assess the impacts of changes in Climate, Atmospheric CO2, Irrigation, Fertilizer and Geographic Distribution on Historical and Future Crop Yields

Science.gov (United States)

Lawrence, P.

2015-12-01

Since the start of the green revolution global crop yields have increased linearly for most major cereal crops, so that present day global values are around twice those of the 1960s. The increase in crop yields have allowed for large increases in global agricultural production without correspondingly large increases in cropping area. Future projections under the Shared Socio-economic Pathways (SSP) framework and other assessments result in increases of global crop production of greater than 100% by the year 2050. In order to meet this increased agricultural demand within the available arable land, future production gains need to be understood in terms of the yield changes due to changes in climate, atmospheric CO2, and adaptive management such as irrigation and fertilizer application. In addition to the changes in crop yield, future agricultural demand will need to be met through increasing cropping areas into what are currently marginal lands at the cost of existing forests and other natural ecosystems. In this study we assess the utility of the crop model within the Community Land Model (CLM Crop) to provide both historical and future guidance on changes in crop yields under a range of global idealized crop modeling experiments. The idealized experiments follow the experimental design of the AgMIP Global Gridded Crop Model Intercomparison (GGCMI) in which CLM Crop is a participating model. The idealized experiments consist of global crop simulations for Cotton, Maize, Rice, Soy, Sugarcane, and Wheat under various climate, atmospheric CO2 levels, irrigation prescription, and nitrogen fertilizer application. The time periods simulated for the experiments are for the Historical period (1901 - 2005), and for the two Representative Concentration Pathways of RCP 4.5 and RCP 8.5 (2006 - 2100). Each crop is simulated on all land grid cells globally for each time period with atmospheric forcing that is a combination of: 1. transient climate and CO2; 2. transient climate

The impact of genetically modified crops on soil microbial communities.

Science.gov (United States)

Giovannetti, Manuela; Sbrana, Cristiana; Turrini, Alessandra

2005-01-01

Genetically modified (GM) plants represent a potential benefit for environmentally friendly agriculture and human health. Though, poor knowledge is available on potential hazards posed by unintended modifications occurring during genetic manipulation. The increasing amount of reports on ecological risks and benefits of GM plants stresses the need for experimental works aimed at evaluating the impact of GM crops on natural and agro-ecosystems. Major environmental risks associated with GM crops include their potential impact on non-target soil microorganisms playing a fundamental role in crop residues degradation and in biogeochemical cycles. Recent works assessed the effects of GM crops on soil microbial communities on the basis of case-by-case studies, using multimodal experimental approaches involving different target and non-target organisms. Experimental evidences discussed in this review confirm that a precautionary approach should be adopted, by taking into account the risks associated with the unpredictability of transformation events, of their pleiotropic effects and of the fate of transgenes in natural and agro-ecosystems, weighing benefits against costs.

Simultaneous improvement in productivity, water use, and albedo through crop structural modification.

Science.gov (United States)

Drewry, Darren T; Kumar, Praveen; Long, Stephen P

2014-06-01

Spanning 15% of the global ice-free terrestrial surface, agricultural lands provide an immense and near-term opportunity to address climate change, food, and water security challenges. Through the computationally informed breeding of canopy structural traits away from those of modern cultivars, we show that solutions exist that increase productivity and water use efficiency, while increasing land-surface reflectivity to offset greenhouse gas warming. Plants have evolved to maximize capture of radiation in the upper leaves, thus shading competitors. While important for survival in the wild, this is suboptimal in monoculture crop fields for maximizing productivity and other biogeophysical services. Crop progenitors evolved over the last 25 million years in an atmosphere with less than half the [CO2] projected for 2050. By altering leaf photosynthetic rates, rising [CO2] and temperature may also alter the optimal canopy form. Here using soybean, the world's most important protein crop, as an example we show by applying optimization routines to a micrometeorological leaf canopy model linked to a steady-state model of photosynthesis, that significant gains in production, water use, and reflectivity are possible with no additional demand on resources. By modifying total canopy leaf area, its vertical profile and angular distribution, and shortwave radiation reflectivity, all traits available in most major crop germplasm collections, increases in productivity (7%) are possible with no change in water use or albedo. Alternatively, improvements in water use (13%) or albedo (34%) can likewise be made with no loss of productivity, under Corn Belt climate conditions. © 2014 California Institute of Technology. Government sponsorship acknowledged.

The Crop Journal: A new scientific journal for the global crop science community

Directory of Open Access Journals (Sweden)

Jianmin Wan

2013-10-01

Full Text Available As global population increases and demands for food supplies become greater, we face great challenges in providing more products and in larger quantities from less arable land. Crop science has gained increasing importance in meeting these challenges and results of scientific research must be communicated worldwide on a regular basis. In many countries, however, crop scientists have to publish the results of their investigations in national journals with heterogeneous contents and in their native languages. As a consequence, valuable work often remains unknown to scientists elsewhere. As a big country with a large number of crop scientists, China has a wide range of climatic and ecological environments, diverse plant species and cropping systems, and different regional needs for food supplies, which justify the recent decision by the Crop Science Society of China and the Institute of Crop Science within the Chinese Academy of Agricultural Sciences, to launch a new communication channel, The Crop Journal. The goal of The Crop Journal is to meet an urgent need for a major Asia-based journal that covers the diverse fields of crop science. Our aim is to create a vital and thought-provoking journal that will highlight state-of-the-art original work and reviews by high-profile crop scientists and investigative groups throughout the world — a journal that will respond to the needs of specialists in strategic crop research. We will work with scientific and publishing colleagues worldwide, using The Plant Journal and Crop Science as models, to establish The Crop Journal as a broadly based high quality journal and a premier forum for issues in crop science. The Crop Journal will cover a wide range of topics, including crop genetics, breeding, agronomy, crop physiology, germplasm resources, grain chemistry, grain storage and processing, crop management practices, crop biotechnology, and biomathematics. The journal also encourages the submission of review

Crop domestication, global human-mediated migration, and the unresolved role of geography in pest control

Directory of Open Access Journals (Sweden)

Yolanda H. Chen

2016-05-01

Full Text Available Abstract Ecological pest management seeks to improve pest control through the manipulation of ecological processes that promote natural enemies and suppress pests. These approaches can involve cultural practices such as reduced tillage, increased use of non-crop plants that provide food and shelter for natural enemies, and intercropping to enhance the abundance and diversity of natural enemies. A major assumption of ecological pest management is that these activities can be equally effective for all insect herbivores. Here, I propose that these strategies may only be effective for a subset of pests and geographic regions because most insect pests have complex evolutionary histories that make them difficult to manage. I discuss how crop domestication and human-mediated migration are major evolutionary events that shape the geography of interactions between plants, herbivores, and natural enemies. Insect herbivores can evolve to be pests through three major modes: 1 herbivores associated with the crop wild ancestor may shift onto the domesticated crop, 2 herbivores may host-shift from native host plants onto an introduced crop, or 3 human-mediated migration can introduce insect pests into new cropping regions. The resulting geographic structure can influence the success of pest management by altering ecological factors such as: species distributions, patterns of biodiversity, community structure, and natural enemy attack rates. I discuss how the different modes of insect pest evolution structure a set of relevant questions and approaches for ecological pest management. By acknowledging how agricultural history and geography shape the ecology and evolution of insect pests, we may collectively develop a better capacity to identify where and how ecological pest management approaches can be most broadly effective.

Challenges and Possibilities for Accommodating Wild Animals in the Realm of Justice

OpenAIRE

Björnegran, Amalia

2017-01-01

Abstract: This research seeks to investigate the possibilities and inadequacies of including wild animals within the justice realm. It bases this research on the reasons and rationales of representatives within environmental non- governmental organizations (ENGOs), non-governmental organizations (NGOs) and public agency working with animal- rights and welfare or environmental protection. These representatives reason from a personal and organizational perspective concerning justice, ethics and...

Wildly Growing Asparagus (Asparagus officinalis L.) Hosts Pathogenic Fusarium Species and Accumulates Their Mycotoxins.

Science.gov (United States)

Stępień, Łukasz; Waśkiewicz, Agnieszka; Urbaniak, Monika

2016-05-01

Asparagus officinalis L. is an important crop in many European countries, likely infected by a number of Fusarium species. Most of them produce mycotoxins in plant tissues, thus affecting the physiology of the host plant. However, there is lack of information on Fusarium communities in wild asparagus, where they would definitely have considerable environmental significance. Therefore, the main scientific aim of this study was to identify the Fusarium species and quantify their typical mycotoxins present in wild asparagus plants collected at four time points of the season. Forty-four Fusarium strains of eight species--Fusarium acuminatum, Fusarium avenaceum, Fusarium culmorum, Fusarium equiseti, Fusarium oxysporum, Fusarium proliferatum, Fusarium sporotrichioides, and Fusarium tricinctum--were isolated from nine wild asparagus plants in 2013 season. It is the first report of F. sporotrichioides isolated from this particular host. Fumonisin B1 was the most abundant mycotoxin, and the highest concentrations of fumonisins B1-B3 and beauvericin were found in the spears collected in May. Moniliformin and enniatins were quantified at lower concentrations. Mycotoxins synthesized by individual strains obtained from infected asparagus tissues were assessed using in vitro cultures on sterile rice grain. Most of the F. sporotrichioides strains synthesized HT-2 toxin and F. equiseti strains were found to be effective zearalenone producers.

Consideration in selecting crops for the human-rated life support system: a Linear Programming model

Science.gov (United States)

Wheeler, E. F.; Kossowski, J.; Goto, E.; Langhans, R. W.; White, G.; Albright, L. D.; Wilcox, D.; Henninger, D. L. (Principal Investigator)

1996-01-01

A Linear Programming model has been constructed which aids in selecting appropriate crops for CELSS (Controlled Environment Life Support System) food production. A team of Controlled Environment Agriculture (CEA) faculty, staff, graduate students and invited experts representing more than a dozen disciplines, provided a wide range of expertise in developing the model and the crop production program. The model incorporates nutritional content and controlled-environment based production yields of carefully chosen crops into a framework where a crop mix can be constructed to suit the astronauts' needs. The crew's nutritional requirements can be adequately satisfied with only a few crops (assuming vitamin mineral supplements are provided) but this will not be satisfactory from a culinary standpoint. This model is flexible enough that taste and variety driven food choices can be built into the model.

Black-bellied whistling duck (Dendrocygna autumnalis) brain cholinesterase characterization and diagnosis of anticholinesterase pesticide exposure in wild populations from Mexico.

Science.gov (United States)

Osten, Jaime Rendón-von; Soares, Amadeu M V M; Guilhermino, Lucia

2005-02-01

Rice is the main crop in the subbasin of the fluvial lagoon system of Palizada River (FLSPR) in the state of Campeche, Mexico. The pesticides used to control pests of this crop mainly are carbofuran, chlorpyrifos, and glyphosate. Black-bellied whistling duck (Dendrocygna autumnalis) is an ecologically and economically important species in the area. This duck is consumed by local inhabitants throughout the year, despite its potential exposure to pesticides. Due to its feeding habits, abundance, and nutritional value, D. autumnalis is a good indicator of environmental contamination and a potential route of human exposure to organophosphate and carbamate pesticides. In this study, the brain cholinesterase (ChE) in the frontal cerebral cortex of autochthonous ducks was characterized. In addition, the potential of the three locally used pesticides and mixtures to inhibit ChE activity was investigated and the exposure of the wild duck population during intensive pesticide applications in rice fields was evaluated. We found that acetylcholinesterase (AChE) seems to be the predominant ChE form in the biological fraction analyzed. Carbofuran was the most potent ChE inhibitor of D. autumnalis brain ChE activity from the three pesticides analyzed. Cholinesterase inhibition after exposure to pesticide mixtures predominantly was due to carbofuran. A decrease (p 30%) was apparent in wild ducks compared to reference ducks, with recovery of ChE inhibition in wild ducks occurring months later when no pesticides were applied in the field. Dendrocygna autumnalis brain ChE is a suitable parameter for inclusion in biomonitoring programs for both environmental protection and human safety.

Screening boreal energy crops and crop residues for methane biofuel production

Energy Technology Data Exchange (ETDEWEB)

Lehtomaeki, A.; Rintala, J.A. [Department of Biological and Environmental Science, University of Jyvaeskylae, P.O. Box 35, FI-40014 Jyvaeskylae (Finland); Viinikainen, T.A. [Department of Chemistry, University of Jyvaeskylae, P.O. Box 35, FI-40014 Jyvaeskylae (Finland)

2008-06-15

The purpose of the study was to screen potential boreal energy crops and crop residues for their suitability in methane production and to investigate the effect of harvest time on the methane production potential of different crops. The specific methane yields of crops, determined in 100-200 d methane potential assays, varied from 0.17 to 0.49 m{sup 3} CH{sub 4} kg{sup -1} VS{sub added} (volatile solids added) and from 25 to 260 m{sup 3} CH{sub 4} t{sub ww}{sup -1} (tonnes of wet weight). Jerusalem artichoke, timothy-clover grass and reed canary grass gave the highest potential methane yields of 2900-5400 m{sup 3} CH{sub 4} ha{sup -1}, corresponding to a gross energy yield of 28-53 MWh ha{sup -1} and ca. 40,000-60,000 km ha{sup -1} in passenger car transport. The effect of harvest time on specific methane yields per VS of crops varied a lot, whereas the specific methane yields per t{sub ww} increased with most crops as the crops matured. (author)

Understanding the weather signal in national crop-yield variability

Science.gov (United States)

Frieler, Katja; Schauberger, Bernhard; Arneth, Almut; Balkovič, Juraj; Chryssanthacopoulos, James; Deryng, Delphine; Elliott, Joshua; Folberth, Christian; Khabarov, Nikolay; Müller, Christoph; Olin, Stefan; Pugh, Thomas A. M.; Schaphoff, Sibyll; Schewe, Jacob; Schmid, Erwin; Warszawski, Lila; Levermann, Anders

2017-06-01

Year-to-year variations in crop yields can have major impacts on the livelihoods of subsistence farmers and may trigger significant global price fluctuations, with severe consequences for people in developing countries. Fluctuations can be induced by weather conditions, management decisions, weeds, diseases, and pests. Although an explicit quantification and deeper understanding of weather-induced crop-yield variability is essential for adaptation strategies, so far it has only been addressed by empirical models. Here, we provide conservative estimates of the fraction of reported national yield variabilities that can be attributed to weather by state-of-the-art, process-based crop model simulations. We find that observed weather variations can explain more than 50% of the variability in wheat yields in Australia, Canada, Spain, Hungary, and Romania. For maize, weather sensitivities exceed 50% in seven countries, including the United States. The explained variance exceeds 50% for rice in Japan and South Korea and for soy in Argentina. Avoiding water stress by simulating yields assuming full irrigation shows that water limitation is a major driver of the observed variations in most of these countries. Identifying the mechanisms leading to crop-yield fluctuations is not only fundamental for dampening fluctuations, but is also important in the context of the debate on the attribution of loss and damage to climate change. Since process-based crop models not only account for weather influences on crop yields, but also provide options to represent human-management measures, they could become essential tools for differentiating these drivers, and for exploring options to reduce future yield fluctuations.

Modelling farmer uptake of perennial energy crops in the UK

International Nuclear Information System (INIS)

Sherrington, Chris; Moran, Dominic

2010-01-01

The UK Biomass Strategy suggests that to reach the technical potential of perennial energy crops such as short rotation coppice (SRC) willow and miscanthus by 2020 requires 350,000 hectares of land. This represents a more than 20-fold increase on the current 15,546 hectares. Previous research has identified several barriers to adoption, including concerns over security of income from contracts. In addition, farmers perceive returns from these crops to be lower than for conventional crops. This paper uses a farm-level linear programming model to investigate theoretical uptake of energy crops at different gross margins under the assumption of a profit-maximising decision maker, and in the absence of known barriers to adoption. The findings suggest that while SRC willow, at current prices, remains less competitive, returns to miscanthus should have encouraged adoption on a wider scale than at present. This highlights the importance of the barriers to adoption. Recently announced contracts for miscanthus appear to offer a significant premium to farmers in order to encourage them to grow the crops. This raises the question of whether a more cost-effective approach would be for government to provide guarantees addressing farmers concerns including security of income from the contracts. Such an approach should encourage adoption at lower gross margins. (author)

Wild harvest

NARCIS (Netherlands)

Cruz-Garcia, G.S.; Struik, P.C.; Johnson, D.E.

2016-01-01

Rice fields provide not only a staple food but are also bio-diverse and multi-functional ecosystems. Wild food plants are important elements of biodiversity in rice fields and are critical components to the subsistence of poor farmers. The spatial and seasonal distribution of wild food plants

77 FR 22467 - Common Crop Insurance Regulations; Fresh Market Tomato (Dollar Plan) Crop Provisions

Science.gov (United States)

2012-04-16

...-0006] RIN 0563-AC32 Common Crop Insurance Regulations; Fresh Market Tomato (Dollar Plan) Crop... Insurance Corporation (FCIC) finalizes the Common Crop Insurance Regulations, Fresh Market Tomato (Dollar... Common Crop Insurance Regulations (7 CFR part 457), Fresh Market Tomato (Dollar Plan) Crop Provisions...

Chemical control of wild sorghum (sorghum arundinaceum Del. Stapf. in faba bean (vicia faba L.) in the Northern State of Sudan

International Nuclear Information System (INIS)

Bedry, K. A. M.; Elamin, A. E. M.

2011-01-01

An experiment was conducted at Merowe Research Station farm, in the Northern State, Sudan, during 2008/2009 and 2009/2010 seasons. The objectives of the experiment were to determine the damage inflicted by a wild sorghum species (Sorghum arundinaceum (Del.) Stapf. ) on the yield of faba bean (Vicia faba L.) and to evaluate the efficacy of the post-emergence herbicide clodinafop-propargyl (Topik) on wild sorghum and its effect on faba bean yield. The wild sorghum reduced faba bean crop stand and straw and seed yields by 53% - 76%, 76% - 79% and 88% - 91%, respectively, compared with the hand-weeded control. Faba bean was tolerant to the herbicide. The herbicide, at all rates, effected complete (100%) and persistent control of the wild sorghum and resulted in faba bean seed yield comparable to the hand-weeded control. The lowest dose (0.075 kg a.i/ha) of the herbicide used was equal to 75% of the dose recommended for the control of wild sorghum in wheat. It is concluded that clodinafop-propargyl at 0.075 kg a.e/ha could be used in controlling wild sorghum in faba bean. At this rate, the marginal rate of return was about 35 which indicating that every monetary unit (SDG 1) invested in the mentioned treatment would be returned back, plus additional amount of 35 SDG.(Author)

Diversity and abundance of lepidopteran populations from selected crops of district faisalabad, pakistan

International Nuclear Information System (INIS)

Maalik, S.; Rana, S.A.; Khan, H.A.; Ashfaq, M.

2012-01-01

Lepidopterans are represented by one of the most diverse group of insects. They are phytophagous as well as pollinators at the same time. During present study four crops i.e Wheat, Fodder, Brassica and Vegetables were sampled to assess the diversity and abundance of Lepidopteran populations. A total of 2811 specimens belonging to 14 species and 6 families were recorded. Pieris brassicae (29.46%) was the dominant species followed by Trichoplusia ni (19.28%), Helicoverpa Zea (11.78%), Helicoverpa armigera (11.60%), Spodoptera exigua (6.65%), Psedoplusia includes (5.09%), Spodoptera litura (3.81%), Agrotis ipsilon (4.87%), Plutella xylostella (2.92%), Lymatria dispar (2.24%), Pieris rapae (0.92%), Galleria mellonella (0.71%), Evergestris rimosalis (0.53%) and Menduca sexta (0.14%). Significant differences were observed among different crops by applying Shannon Diversity Index and T- test. CA (Cluster analysis) represented the species association with different crops. Majority of the species showed association with Vegetables and Fodder and least association was observed with Wheat. Such types of studies are necessary to design integrated pest management programs to control these pests. (author)

Dietary values of wild and semi-wild edible plants in Southern Ethiopia

African Journals Online (AJOL)

However, traditional processing methods lower most of the anti-nutritionals and their respective risks. New food composition tables that integrate indigenous knowledge and nutritional content of the semi-wild and wild edibles are recommended. Wild edibles can be considered to improve livelihood security and reduce ...

Integrated Modeling of Crop Growth and Water Resource Management to Project Climate Change Impacts on Crop Production and Irrigation Water Supply and Demand in African Nations

Science.gov (United States)

Dale, A. L.; Boehlert, B.; Reisenauer, M.; Strzepek, K. M.; Solomon, S.

2017-12-01

Climate change poses substantial risks to African agriculture. These risks are exacerbated by concurrent risks to water resources, with water demand for irrigation comprising 80 to 90% of water withdrawals across the continent. Process-based crop growth models are able to estimate both crop demand for irrigation water and crop yields, and are therefore well-suited to analyses of climate change impacts at the food-water nexus. Unfortunately, impact assessments based on these models generally focus on either yields or water demand, rarely both. For this work, we coupled a crop model to a water resource management model in order to predict national trends in the impact of climate change on crop production, irrigation water demand, and the availability of water for irrigation across Africa. The crop model FAO AquaCrop-OS was run at 2ox2o resolution for 17 different climate futures from the CMIP5 archive, nine for Representative Concentration Pathway (RCP) 4.5 and eight for RCP8.5. Percent changes in annual rainfed and irrigated crop production and temporal shifts in monthly irrigation water demand were estimated for the years 2030, 2050, 2070, and 2090 for maize, sorghum, rice, wheat, cotton, sugarcane, fruits & vegetables, roots & tubers, and legumes & soybeans. AquaCrop was then coupled to a water management model (WEAP) in order to project changes in the ability of seven major river basins (the Congo, Niger, Nile, Senegal, Upper Orange, Volta, and Zambezi) to meet irrigation water demand out to 2050 in both average and dry years in the face of both climate change and irrigation expansion. Spatial and temporal trends were identified and interpreted through the lens of potential risk management strategies. Uncertainty in model estimates is reported and discussed.

Automated multi-plug filtration cleanup for liquid chromatographic-tandem mass spectrometric pesticide multi-residue analysis in representative crop commodities.

Science.gov (United States)

Qin, Yuhong; Zhang, Jingru; Zhang, Yuan; Li, Fangbing; Han, Yongtao; Zou, Nan; Xu, Haowei; Qian, Meiyuan; Pan, Canping

2016-09-02

An automated multi-plug filtration cleanup (m-PFC) method on modified QuEChERS (quick, easy, cheap, effective, rugged, and safe) extracts was developed. The automatic device was aimed to reduce labor-consuming manual operation workload in the cleanup steps. It could control the volume and the speed of pulling and pushing cycles accurately. In this work, m-PFC was based on multi-walled carbon nanotubes (MWCNTs) mixed with other sorbents and anhydrous magnesium sulfate (MgSO4) in a packed tip for analysis of pesticide multi-residues in crop commodities followed by liquid chromatography with tandem mass spectrometric (LC-MS/MS) detection. It was validated by analyzing 25 pesticides in six representative matrices spiked at two concentration levels of 10 and 100μg/kg. Salts, sorbents, m-PFC procedure, automated pulling and pushing volume, automated pulling speed, and pushing speed for each matrix were optimized. After optimization, two general automated m-PFC methods were introduced to relatively simple (apple, citrus fruit, peanut) and relatively complex (spinach, leek, green tea) matrices. Spike recoveries were within 83 and 108% and 1-14% RSD for most analytes in the tested matrices. Matrix-matched calibrations were performed with the coefficients of determination >0.997 between concentration levels of 10 and 1000μg/kg. The developed method was successfully applied to the determination of pesticide residues in market samples. Copyright © 2016 Elsevier B.V. All rights reserved.

Morphological and Molecular Data Reveal Three Distinct Populations of Indian Wild Rice Oryza rufipogon Griff. Species Complex.

Science.gov (United States)

Singh, Balwant; Singh, Nisha; Mishra, Shefali; Tripathi, Kabita; Singh, Bikram P; Rai, Vandna; Singh, Ashok K; Singh, Nagendra K

2018-01-01

Wild relatives of crops possess adaptive mutations for agronomically important traits, which could play significant role in crop improvement for sustainable agriculture. However, global climate change and human activities pose serious threats to the natural habitats leading to erosion of genetic diversity of wild rice populations. The purpose of this study was to explore and characterize India's huge untapped wild rice diversity in Oryza rufipogon Griff. species complex from a wide range of ecological niches. We made strategic expeditions around diversity hot spots in 64 districts of nine different agro-climatic zones of the country and collected 418 wild rice accessions. Significant variation was observed among the accessions for 46 morphological descriptors, allowing classification into O. nivara, O. rufipogon , and O. sativa f. spontanea morpho-taxonomic groups. Genome-specific pSINE1 markers confirmed all the accessions having AA genome, which were further classified using ecotype-specific pSINE1 markers into annual, perennial, intermediate, and an unknown type. Principal component analysis revealed continuous variation for the morphological traits in each ecotype group. Genetic diversity analysis based on multi-allelic SSR markers clustered these accessions into three major groups and analysis of molecular variance for nine agro-climatic zones showed that 68% of the genetic variation was inherent amongst individuals while only 11% of the variation separated the zones, though there was significant correlation between genetic and spatial distances of the accessions. Model based population structure analysis using genome wide bi-allelic SNP markers revealed three sub-populations designated 'Pro-Indica,' 'Pro-Aus,' and 'Mid-Gangetic,' which showed poor correspondence with the morpho - taxonomic classification or pSINE1 ecotypes. There was Pan-India distribution of the 'Pro-Indica' and 'Pro-Aus' sub-populations across agro-climatic zones, indicating a more

Morphological and Molecular Data Reveal Three Distinct Populations of Indian Wild Rice Oryza rufipogon Griff. Species Complex

Science.gov (United States)

Singh, Balwant; Singh, Nisha; Mishra, Shefali; Tripathi, Kabita; Singh, Bikram P.; Rai, Vandna; Singh, Ashok K.; Singh, Nagendra K.

2018-01-01

Wild relatives of crops possess adaptive mutations for agronomically important traits, which could play significant role in crop improvement for sustainable agriculture. However, global climate change and human activities pose serious threats to the natural habitats leading to erosion of genetic diversity of wild rice populations. The purpose of this study was to explore and characterize India’s huge untapped wild rice diversity in Oryza rufipogon Griff. species complex from a wide range of ecological niches. We made strategic expeditions around diversity hot spots in 64 districts of nine different agro-climatic zones of the country and collected 418 wild rice accessions. Significant variation was observed among the accessions for 46 morphological descriptors, allowing classification into O. nivara, O. rufipogon, and O. sativa f. spontanea morpho-taxonomic groups. Genome-specific pSINE1 markers confirmed all the accessions having AA genome, which were further classified using ecotype-specific pSINE1 markers into annual, perennial, intermediate, and an unknown type. Principal component analysis revealed continuous variation for the morphological traits in each ecotype group. Genetic diversity analysis based on multi-allelic SSR markers clustered these accessions into three major groups and analysis of molecular variance for nine agro-climatic zones showed that 68% of the genetic variation was inherent amongst individuals while only 11% of the variation separated the zones, though there was significant correlation between genetic and spatial distances of the accessions. Model based population structure analysis using genome wide bi-allelic SNP markers revealed three sub-populations designated ‘Pro-Indica,’ ‘Pro-Aus,’ and ‘Mid-Gangetic,’ which showed poor correspondence with the morpho-taxonomic classification or pSINE1 ecotypes. There was Pan-India distribution of the ‘Pro-Indica’ and ‘Pro-Aus’ sub-populations across agro-climatic zones

Environmental Nitrogen Losses from Commercial Crop Production Systems in the Suwannee River Basin of Florida.

Science.gov (United States)

Prasad, Rishi; Hochmuth, George J

2016-01-01

The springs and the Suwannee river of northern Florida in Middle Suwanee River Basin (MSRB) are among several examples in this planet that have shown a temporal trend of increasing nitrate concentration primarily due to the impacts of non-point sources such as agriculture. The rate of nitrate increase in the river as documented by Ham and Hatzell (1996) was 0.02 mg N L-1 y-1. Best management practices (BMPs) for nutrients were adopted by the commercial farms in the MSRB region to reduce the amounts of pollutants entering the water bodies, however the effectiveness of BMPs remains a topic of interest and discussion among the researchers, environmental administrators and policy makers about the loads of nitrogen entering into groundwater and river systems. Through this study, an initiative was taken to estimate nitrogen losses into the environment from commercial production systems of row and vegetable crops that had adopted BMPs and were under a presumption of compliance with state water quality standards. Nitrogen mass budget was constructed by quantifying the N sources and sinks for three crops (potato (Solanum tuberosum L.), sweet corn (Zea mays L.) and silage corn (Zea mays L.)) over a four year period (2010-2013) on a large representative commercial farm in northern Florida. Fertilizer N was found to be the primary N input and represented 98.0 ± 1.4, 91.0 ± 13.9, 78.0 ± 17.3% of the total N input for potato, sweet corn, and silage corn, respectively. Average crop N uptake represented 55.5%, 60.5%, and 65.2% of the mean total input N whereas average mineral N left in top 0.3 m soil layer at harvest represented 9.1%, 4.5%, and 2.6% of the mean total input N. Mean environmental N losses represented 35.3%, 34.3%, and 32.7% of the mean total input N for potato, sweet corn, and silage corn, respectively. Nitrogen losses showed a linear trend with increase in N inputs. Although, there is no quick fix for controlling N losses from crop production in MSRB, the

Targeting the right input data to improve crop modeling at global level

Science.gov (United States)

Adam, M.; Robertson, R.; Gbegbelegbe, S.; Jones, J. W.; Boote, K. J.; Asseng, S.

2012-12-01

Designed for location-specific simulations, the use of crop models at a global level raises important questions. Crop models are originally premised on small unit areas where environmental conditions and management practices are considered homogeneous. Specific information describing soils, climate, management, and crop characteristics are used in the calibration process. However, when scaling up for global application, we rely on information derived from geographical information systems and weather generators. To run crop models at broad, we use a modeling platform that assumes a uniformly generated grid cell as a unit area. Specific weather, specific soil and specific management practices for each crop are represented for each of the cell grids. Studies on the impacts of the uncertainties of weather information and climate change on crop yield at a global level have been carried out (Osborne et al, 2007, Nelson et al., 2010, van Bussel et al, 2011). Detailed information on soils and management practices at global level are very scarce but recognized to be of critical importance (Reidsma et al., 2009). Few attempts to assess the impact of their uncertainties on cropping systems performances can be found. The objectives of this study are (i) to determine sensitivities of a crop model to soil and management practices, inputs most relevant to low input rainfed cropping systems, and (ii) to define hotspots of sensitivity according to the input data. We ran DSSAT v4.5 globally (CERES-CROPSIM) to simulate wheat yields at 45arc-minute resolution. Cultivar parameters were calibrated and validated for different mega-environments (results not shown). The model was run for nitrogen-limited production systems. This setting was chosen as the most representative to simulate actual yield (especially for low-input rainfed agricultural systems) and assumes crop growth to be free of any pest and diseases damages. We conducted a sensitivity analysis on contrasting management

Caesium-137 root uptake by agricultural and wild crops in post-Chernobyl landscape: the possibilities for phytoremediation?

Science.gov (United States)

Paramonova, Tatiana; Shamshurina, Eugenia; Komissarova, Olga; Belyaev, Vladimir

2015-04-01

In spite of long term period after Chernobyl fallout (≈25 years after the accident) the level of Cs-137 in soils of contaminated landscapes remains several times more than radiation safety standard (= 37 kBq/m2). In particular, within the area of Plavsk radioactive hot spot (Tula region, Russia) current Cs-137 activities in soil are 460-500 Bq/kg (170-200 kBq/m2) on watershed, 580-680 Bq/kg (200-220 kBq/m2) in arable lower parts of slopes and 620-710 Bq/kg (210-280 kBq/m2) in untilled foots of slopes and river floodplains. To estimate the process of Cs-137 root uptake and incorporation of the radionuclide in plant tissues 6 agricultural crops of typical field rotation (spring barley, maize, summer rape, galega, potatoes, amaranth) as well as natural ecosystems of dry and wet meadows were selected for the detailed study. Total bioproductivity of agricultural crops varies between 1.7-3.9 kg/m2, natural grass ecosystems - 1.9-2.2 g/m2, and is obviously unaffected by radioactive land contamination. At the same time Cs-137 activity in total biomass slightly increases with Cs-137 activity in soil (correlation coefficient r=0.45) and with total biomass (correlation coefficient r=0.51) in the row: rape (5 Bq/kg) cereals that are true accumulators of Cs-137 seem to be useless for phytoremediation purposes, as 86-97% of the radionuclide inventory is associated with roots and remains in soil after cutting of aboveground parts. On the other hand, galega and amaranth could be considered as agricultural crops potentially being used for phytoremediation, since 87-93% of Cs-137 inventory is located in shoots. Potatoes having rather high aboveground biomass and easily removed from soil underground part could be also used for phytoremediation. However, it should be clearly understood that in total Cs-137 inventory in "soil-plant" system the annual amount of the radionuclide's consumption (that may be alienated when harvesting) is less than 0.01%, while the rate of Cs-137

Biotechnology: herbicide-resistant crops

Science.gov (United States)

Transgenic, herbicide-resistant (HR) crops are planted on about 80% of the land covered by transgenic crops. More than 90% of HR crios are glyphosate-resistant (GR) crops, the others being resistant to glufosinate. The wide-scale adoption of HR crops, largely for economic reasons, has been the mos...

Globally Increased Crop Growth and Cropping Intensity from the Long-Term Satellite-Based Observations

Science.gov (United States)

Chen, Bin

2018-04-01

Understanding the spatiotemporal change trend of global crop growth and multiple cropping system under climate change scenarios is a critical requirement for supporting the food security issue that maintains the function of human society. Many studies have predicted the effects of climate changes on crop production using a combination of filed studies and models, but there has been limited evidence relating decadal-scale climate change to global crop growth and the spatiotemporal distribution of multiple cropping system. Using long-term satellite-derived Normalized Difference Vegetation Index (NDVI) and observed climate data from 1982 to 2012, we investigated the crop growth trend, spatiotemporal pattern trend of agricultural cropping intensity, and their potential correlations with respect to the climate change drivers at a global scale. Results show that 82.97 % of global cropland maximum NDVI witnesses an increased trend while 17.03 % of that shows a decreased trend over the past three decades. The spatial distribution of multiple cropping system is observed to expand from lower latitude to higher latitude, and the increased cropping intensity is also witnessed globally. In terms of regional major crop zones, results show that all nine selected zones have an obvious upward trend of crop maximum NDVI (p impact on the crop growth trend.

iTRAQ-facilitated proteomic profiling of anthers from a photosensitive male sterile mutant and wild-type cotton (Gossypium hirsutum L.).

Science.gov (United States)

Liu, Ji; Pang, Chaoyou; Wei, Hengling; Song, Meizhen; Meng, Yanyan; Ma, Jianhui; Fan, Shuli; Yu, Shuxun

2015-08-03

Male sterility is a common phenomenon in flowering plants, and it has been successfully developed in several crops by taking advantage of heterosis. Cotton (Gossypium hirsutum L.) is an important economic crop, used mainly for the production of textile fiber. Using a space mutation breeding technique, a novel photosensitive genetic male sterile mutant CCRI9106 was isolated from the wild-type upland cotton cultivar CCRI040029. To use CCRI9106 in cotton hybrid breeding, it is of great importance to study the molecular mechanisms of its male sterility. Here, histological and iTRAQ-facilitated proteomic analyses of anthers were performed to explore male sterility mechanisms of the mutant. Scanning and transmission electron microscopy of the anthers showed that the development of pollen wall in CCRI9106 was severely defective with a lack of exine formation. At the protein level, 6121 high-confidence proteins were identified and 325 of them showed differential expression patterns between mutant and wild-type anthers. The proteins up- or down-regulated in MT anthers were mainly involved in exine formation, protein degradation, calcium ion binding,etc. These findings provide valuable information on the proteins involved in anther and pollen development, and contribute to elucidate the mechanism of male sterility in upland cotton. Copyright © 2015. Published by Elsevier B.V.

Wild dogma II: The role and implications of wild dogma for wild dog management in Australia

Directory of Open Access Journals (Sweden)

Benjamin L. ALLEN, Richard M. ENGEMAN, Lee R. ALLEN

2011-12-01

Full Text Available The studies of Allen (2011 and Allen et al. (2011 recently examined the methodology underpinning claims that dingoes provide net benefits to biodiversity by suppressing foxes and cats. They found most studies to have design flaws and/or observational methods that preclude valid interpretations from the data, describing most of the current literature as ‘wild dogma’. In this short supplement, we briefly highlight the roles and implications of wild dogma for wild dog management in Australia. We discuss nomenclature, and the influence that unreliable science can have on policy and practice changes related to apex predator management [Current Zoology 57 (6: 737–740, 2011].

Impact of Post-Translational Modifications of Crop Proteins under Abiotic Stress

Directory of Open Access Journals (Sweden)

Akiko Hashiguchi

2016-12-01

Full Text Available The efficiency of stress-induced adaptive responses of plants depends on intricate coordination of multiple signal transduction pathways that act coordinately or, in some cases, antagonistically. Protein post-translational modifications (PTMs can regulate protein activity and localization as well as protein–protein interactions in numerous cellular processes, thus leading to elaborate regulation of plant responses to various external stimuli. Understanding responses of crop plants under field conditions is crucial to design novel stress-tolerant cultivars that maintain robust homeostasis even under extreme conditions. In this review, proteomic studies of PTMs in crops are summarized. Although the research on the roles of crop PTMs in regulating stress response mechanisms is still in its early stage, several novel insights have been retrieved so far. This review covers techniques for detection of PTMs in plants, representative PTMs in plants under abiotic stress, and how PTMs control functions of representative proteins. In addition, because PTMs under abiotic stresses are well described in soybeans under submergence, recent findings in PTMs of soybean proteins under flooding stress are introduced. This review provides information on advances in PTM study in relation to plant adaptations to abiotic stresses, underlining the importance of PTM study to ensure adequate agricultural production in the future.

Impact of perennial energy crops income variability on the crop selection of risk averse farmers

International Nuclear Information System (INIS)

Alexander, Peter; Moran, Dominic

2013-01-01

The UK Government policy is for the area of perennial energy crops in the UK to expand significantly. Farmers need to choose these crops in preference to conventional rotations for this to be achievable. This paper looks at the potential level and variability of perennial energy crop incomes and the relation to incomes from conventional arable crops. Assuming energy crop prices are correlated to oil prices the results suggests that incomes from them are not well correlated to conventional arable crop incomes. A farm scale mathematical programming model is then used to attempt to understand the affect on risk averse farmers crop selection. The inclusion of risk reduces the energy crop price required for the selection of these crops. However yields towards the highest of those predicted in the UK are still required to make them an optimal choice, suggesting only a small area of energy crops within the UK would be expected to be chosen to be grown. This must be regarded as a tentative conclusion, primarily due to high sensitivity found to crop yields, resulting in the proposal for further work to apply the model using spatially disaggregated data. - Highlights: ► Energy crop and conventional crop incomes suggested as uncorrelated. ► Diversification effect of energy crops investigated for a risk averse farmer. ► Energy crops indicated as optimal selection only on highest yielding UK sites. ► Large establishment grant rates to substantially alter crop selections.

The Energy Effectiveness Of Crops In Crop Rotation Under Different Soil Tillage Systems

Directory of Open Access Journals (Sweden)

Strašil Zdeněk

2015-09-01

Full Text Available The paper identifies and compares the energy balance of winter wheat, spring barley and white mustard – all grown in crop rotation under different tillage conditions. The field trial included the conventional tillage (CT method, minimum tillage (MT and a system with no tillage (NT. The energy inputs included both the direct and indirect energy component. Energy outputs are evaluated as gross calorific value (gross heating value of phytomass dry matter of the primary product and the total harvested production. The energy effectiveness (energy output: energy input was selected for evaluation. The greatest energy effectiveness for the primary product was established as 6.35 for barley, 6.04 for wheat and 3.68 for mustard; in the case of total production, it was 9.82 for barley, 10.08 for wheat and 9.72 for mustard. When comparing the different tillage conditions, the greatest energy effectiveness was calculated for the evaluated crops under the MT operation and represented the primary product of wheat at 6.49, barley at 6.69 and mustard at 3.92. The smallest energy effectiveness for the primary product was found in wheat 5.77 and barley 6.10 under the CT option; it was 3.55 for mustard under the option of NT. Throughout the entire cropping pattern, the greatest energy effectiveness was established under the minimum tillage option – 5.70 for the primary product and 10.47 for the total production. On the other hand, the smallest values were calculated under CT – 5.22 for the primary product and 9.71 for total production.

Cultivated grapevines represent a symptomless reservoir for the transmission of hop stunt viroid to hop crops: 15 years of evolutionary analysis.

Directory of Open Access Journals (Sweden)

Yoko Kawaguchi-Ito

Full Text Available Hop stunt was a mysterious disorder that first emerged in the 1940s in commercial hops in Japan. To investigate the origin of this disorder, we infected hops with natural Hop stunt viroid (HpSVd isolates derived from four host species (hop, grapevine, plum and citrus, which except for hop represent possible sources of the ancestral viroid. These plants were maintained for 15 years, then analyzed the HpSVd variants present. Here we show that the variant originally found in cultivated grapevines gave rise to various combinations of mutations at positions 25, 26, 54, 193, and 281. However, upon prolonged infection, these variants underwent convergent evolution resulting in a limited number of adapted mutants. Some of them showed nucleotide sequences identical to those currently responsible for hop stunt epidemics in commercial hops in Japan, China, and the United States. Therefore, these results indicate that we have successfully reproduced the original process by which a natural HpSVd variant naturally introduced into cultivated hops was able to mutate into the HpSVd variants that are currently present in commercial hops. Furthermore, and importantly, we have identified cultivated grapevines as a symptomless reservoir in which HSVd can evolve and be transmitted to hop crops to cause epidemics.

Interaction of Wild Strains of Aspergilla with Aspergillus parasiticus ATCC15517 and Aflatoxin Production †

Science.gov (United States)

Martins, H. Marina; Almeida, Inês; Marques, Marta; Bernardo, Fernando

2008-01-01

Aflatoxins are secondary metabolites produced by some competent mould strains of Aspergillus flavus, A. parasiticus and A. nomius. These compounds have been extensively studied with regards to their toxicity for animals and humans; they are able to induce liver cancer and may cause a wide range of adverse effects in living organisms. Aflatoxins are found as natural contaminants of food and feed; the main line of the strategy to control them is based on the prevention of the mould growth in raw vegetable or during its storage and monitoring of each crop batch. Mould growth is conditioned by many ecological factors, including biotic ones. Hazard characterization models for aflatoxins in crops must take into consideration biotic interactions between moulds and their potential effects on growth development. The aim of this work is to study the effect of the biotic interaction of 14 different wild strains of Aspergilla (different species), with a competent strain (Aspergillus parasiticus ATCC 15517) using an in vitro production model. The laboratory model used was a natural matrix (humidified cracked corn), on which each wild strain challenged the aflatoxin production of a producer strain. Cultures were incubated at 28°C for 12 days and sampled at the 8th and 12th. Aflatoxin detection and quantification was performed by HPLC using a procedure with a MRPL = 1 μg/kg. Results of those interactive cultures revealed both synergic and antagonistic effects on aflatoxin biosynthesis. Productivity increases were particularly evident on the 8th day of incubation with wild strains of A. flavipes (+ 70.4 %), A. versicolor (+ 54.9 %) and A. flavus 3 (+ 62.6 %). Antagonistic effects were found with A. niger (− 69.5%), A. fumigatus (− 47.6 %) and A. terreus (− 47.6 %) on the 12th day. The increased effects were more evident on the 8th of incubation and the decreases were more patent on the 12th day. Results show that the development of Aspergilla strains concomitantly with

Potential economic pests of solanaceous crops: a new species of Solanum-feeding psyllid from Australia and first record from New Zealand of Acizzia solanicola (Hemiptera: Psyllidae).

Science.gov (United States)

Taylor, Gary S; Kent, Deborah S

2013-02-11

Acizzia credoensis sp. n. is described from a single population on the native plant, Solanum lasiophyllum, from semi-arid Western Australia. The host range of Acizzia solanicola Kent & Taylor, initially recorded as damaging eggplant, S. melongena, in commercial crops and gardens and on wild tobacco bush, S. mauritianum in eastern Australia, is expanded to include the following Solanaceae: rock nightshade, S. petrophilum, cape gooseberry, Physalis peruviana, and an undetermined species of angel's trumpet Brugmansia and Datura. New Zealand specimens of A. solanicola collected in early 2012 from S. mauritianum are the first record for this species from outside Australia, and possibly represent a very recent incursion. The potential for the solanaceous-inhabiting Psyllidae to vector Candidatus Liberibacter solanacearum, an economically important plant pathogen, on native Australian Solanaceae is discussed. The occurrence of A. credoensis and A. solanicola on native Australian Solanum supports the Australian origin for the solanaceous-inhabiting Acizzia psyllids.

Assessment of Climate Change Impacts on Agricultural Water Demands and Crop Yields in California's Central Valley

Science.gov (United States)

Tansey, M. K.; Flores-Lopez, F.; Young, C. A.; Huntington, J. L.

2012-12-01

Long term planning for the management of California's water resources requires assessment of the effects of future climate changes on both water supply and demand. Considerable progress has been made on the evaluation of the effects of future climate changes on water supplies but less information is available with regard to water demands. Uncertainty in future climate projections increases the difficulty of assessing climate impacts and evaluating long range adaptation strategies. Compounding the uncertainty in the future climate projections is the fact that most readily available downscaled climate projections lack sufficient meteorological information to compute evapotranspiration (ET) by the widely accepted ASCE Penman-Monteith (PM) method. This study addresses potential changes in future Central Valley water demands and crop yields by examining the effects of climate change on soil evaporation, plant transpiration, growth and yield for major types of crops grown in the Central Valley of California. Five representative climate scenarios based on 112 bias corrected spatially downscaled CMIP 3 GCM climate simulations were developed using the hybrid delta ensemble method to span a wide range future climate uncertainty. Analysis of historical California Irrigation Management Information System meteorological data was combined with several meteorological estimation methods to compute future solar radiation, wind speed and dew point temperatures corresponding to the GCM projected temperatures and precipitation. Future atmospheric CO2 concentrations corresponding to the 5 representative climate projections were developed based on weighting IPCC SRES emissions scenarios. The Land, Atmosphere, and Water Simulator (LAWS) model was used to compute ET and yield changes in the early, middle and late 21st century for 24 representative agricultural crops grown in the Sacramento, San Joaquin and Tulare Lake basins. Study results indicate that changes in ET and yield vary

Helminth burden and ecological factors associated with alterations in wild host gastrointestinal microbiota

DEFF Research Database (Denmark)

Newbold, Lindsay K.; Burthe, Sarah J.; Oliver, Anna E.

2017-01-01

Infection by gastrointestinal helminths of humans, livestock and wild animals is common, but the impact of such endoparasites on wild hosts and their gut microbiota represents an important overlooked component of population dynamics. Wild host gut microbiota and endoparasites occupy the same...... to quantify helminth infection in situ. Microbiota from the significantly distinct proventriculus (site of infection), cloacal and faecal gastrointestinal tract microbiomes were characterised using 16S rRNA gene-targeted high-throughput sequencing. We found increasingly strong associations between helminth...... infection and microbiota composition progressing away from the site of infection, observing a pronounced dysbiosis in microbiota when samples were partitioned into high- and low-burden groups. We posit this dysbiosis is predominately explained by helminths inducing an anti-inflammatory environment...

GLOBALLY INCREASED CROP GROWTH AND CROPPING INTENSITY FROM THE LONG-TERM SATELLITE-BASED OBSERVATIONS

Directory of Open Access Journals (Sweden)

B. Chen

2018-04-01

Full Text Available Understanding the spatiotemporal change trend of global crop growth and multiple cropping system under climate change scenarios is a critical requirement for supporting the food security issue that maintains the function of human society. Many studies have predicted the effects of climate changes on crop production using a combination of filed studies and models, but there has been limited evidence relating decadal-scale climate change to global crop growth and the spatiotemporal distribution of multiple cropping system. Using long-term satellite-derived Normalized Difference Vegetation Index (NDVI and observed climate data from 1982 to 2012, we investigated the crop growth trend, spatiotemporal pattern trend of agricultural cropping intensity, and their potential correlations with respect to the climate change drivers at a global scale. Results show that 82.97 % of global cropland maximum NDVI witnesses an increased trend while 17.03 % of that shows a decreased trend over the past three decades. The spatial distribution of multiple cropping system is observed to expand from lower latitude to higher latitude, and the increased cropping intensity is also witnessed globally. In terms of regional major crop zones, results show that all nine selected zones have an obvious upward trend of crop maximum NDVI (p < 0.001, and as for climatic drivers, the gradual temperature and precipitation changes have had a measurable impact on the crop growth trend.

Multiyear high-resolution carbon exchange over European croplands from the integration of observed crop yields into CarbonTracker Europe

Science.gov (United States)

Combe, Marie; Vilà-Guerau de Arellano, Jordi; de Wit, Allard; Peters, Wouter

2016-04-01

Carbon exchange over croplands plays an important role in the European carbon cycle over daily-to-seasonal time scales. Not only do crops occupy one fourth of the European land area, but their photosynthesis and respiration are large and affect CO2 mole fractions at nearly every atmospheric CO2 monitoring site. A better description of this crop carbon exchange in our CarbonTracker Europe data assimilation system - which currently treats crops as unmanaged grasslands - could strongly improve its ability to constrain terrestrial carbon fluxes. Available long-term observations of crop yield, harvest, and cultivated area allow such improvements, when combined with the new crop-modeling framework we present. This framework can model the carbon fluxes of 10 major European crops at high spatial and temporal resolution, on a 12x12 km grid and 3-hourly time-step. The development of this framework is threefold: firstly, we optimize crop growth using the process-based WOrld FOod STudies (WOFOST) agricultural crop growth model. Simulated yields are downscaled to match regional crop yield observations from the Statistical Office of the European Union (EUROSTAT) by estimating a yearly regional parameter for each crop species: the yield gap factor. This step allows us to better represent crop phenology, to reproduce the observed multiannual European crop yields, and to construct realistic time series of the crop carbon fluxes (gross primary production, GPP, and autotrophic respiration, Raut) on a fine spatial and temporal resolution. Secondly, we combine these GPP and Raut fluxes with a simple soil respiration model to obtain the total ecosystem respiration (TER) and net ecosystem exchange (NEE). And thirdly, we represent the horizontal transport of carbon that follows crop harvest and its back-respiration into the atmosphere during harvest consumption. We distribute this carbon using observations of the density of human and ruminant populations from EUROSTAT. We assess the model

Wild reindeer of Yakutia

Directory of Open Access Journals (Sweden)

V.M. Safronov

1996-01-01

Full Text Available Three major herds of wild reindeer (Rangifer tarandus tarandus L., totaling over 200,000 animals, occur in the tundra and taiga of northern Yakutia. These herds have been expanding since the late 1950s and now occupy most of their historic range. In addition, several thousand wild reindeer occupy the New Siberian Islands and adjacent coastal mainland tundra, and there are about 60,000 largely sedentary forest reindeer in mountainous areas of the southern two-thirds of the province. Wild reindeer are commercially hunted throughout the mainland, and the production of wild meat is an important part of the economy of the province and of individual reindeer enterprises which produce both wild and domestic meat.

Using participatory risk mapping (PRM to identify and understand people's perceptions of crop loss to animals in Uganda.

Directory of Open Access Journals (Sweden)

Amanda D Webber

Full Text Available Considering how people perceive risks to their livelihoods from local wildlife is central to (i understanding the impact of crop damage by animals on local people and (ii recognising how this influences their interactions with, and attitudes towards, wildlife. Participatory risk mapping (PRM is a simple, analytical tool that can be used to identify and classify risk within communities. Here we use it to explore local people's perceptions of crop damage by wildlife and the animal species involved. Interviews (n = 93, n = 76 and seven focus groups were conducted in four villages around Budongo Forest Reserve, Uganda during 2004 and 2005. Farms (N = 129 were simultaneously monitored for crop loss. Farmers identified damage by wildlife as the most significant risk to their crops; risk maps highlighted its anomalous status compared to other anticipated challenges to agricultural production. PRM was further used to explore farmers' perceptions of animal species causing crop damage and the results of this analysis compared with measured crop losses. Baboons (Papio anubis were considered the most problematic species locally but measurements of loss indicate this perceived severity was disproportionately high. In contrast goats (Capra hircus were considered only a moderate risk, yet risk of damage by this species was significant. Surprisingly, for wild pigs (Potamochoerus sp, perceptions of severity were not as high as damage incurred might have predicted, although perceived incidence was greater than recorded frequency of damage events. PRM can assist researchers and practitioners to identify and explore perceptions of the risk of crop damage by wildlife. As this study highlights, simply quantifying crop loss does not determine issues that are important to local people nor the complex relationships between perceived risk factors. Furthermore, as PRM is easily transferable it may contribute to the identification and development of

Detection and molecular characterization of J subgroup avian leukosis virus in wild ducks in China.

Science.gov (United States)

Zeng, Xiangwei; Liu, Lanlan; Hao, Ruijun; Han, Chunyan

2014-01-01

To assess the status of avian leukosis virus subgroup J (ALV-J) in wild ducks in China, we examined samples from 528 wild ducks, representing 17 species, which were collected in China over the past 3 years. Virus isolation and PCR showed that 7 ALV-J strains were isolated from wild ducks. The env genes and the 3'UTRs from these isolates were cloned and sequenced. The env genes of all 7 wild duck isolates were significantly different from those in the prototype strain HPRS-103, American strains, broiler ALV-J isolates and Chinese local chicken isolates, but showed close homology with those found in some layer chicken ALV-J isolates and belonged to the same group. The 3'UTRs of 7 ALV-J wild ducks isolates showed close homology with the prototype strain HPRS-103 and no obvious deletion was found in the 3'UTR except for a 1 bp deletion in the E element that introduced a binding site for c-Ets-1. Our study demonstrated the presence of ALV-J in wild ducks and investigated the molecular characterization of ALV-J in wild ducks isolates.

Influence of pressure cooking on antioxidant activity of wild (Ensete superbum) and commercial banana (Musa paradisiaca var. Monthan) unripe fruit and flower.

Science.gov (United States)

Sasipriya, Gopalakrishnan; Maria, Cherian Lintu; Siddhuraju, Perumal

2014-10-01

Banana is a highly nutritious fruit crop consumed by many people's worldwide while endangered species are consumed by limited peoples and their health benefits are not explored. The unripe fruits and flowers of wild and commercial banana are consumed by peoples after cooking only. Hence, the present study was undertaken to evaluate and compare the effect of pressure cooking on antioxidant activity of wild and commercial banana species. The raw and processed samples were extracted with 70 % acetone. Except wild flower, thermal processing enhanced the content of phenolics, tannins, flavonoids, DPPH, ABTS, FRAP, hydroxyl and peroxidation activity than raw. Wild species presented higher phenolics, tannins, DPPH, ABTS and FRAP activity than commercial ones. Except few samples, wild species and commercial species exhibit similar activity in superoxide, hydroxyl and peroxidation activity. FRAP (r (2)  = 0.922; 0.977) and hydroxyl (r (2)  = 0.773; 0.744) activities were dependent on phenolics and tannin content whereas tannins may be responsible for DPPH scavenging activity (r (2)  = 0.745). Thermal processing enhanced the antioxidant activity might be due to the release of bound phenolics from cell wall and oxidation and polymerisation of compounds present in it. This wild species may be an alternative to commercial ones and will be valuable to consumers for protecting from chronic diseases.

The effect of cropping sequence on the crop yield and nutrient availability

International Nuclear Information System (INIS)

Sisworo, W.H.; Rasjid, H.

1988-01-01

A two seasons field experiment was conducted to study the carry over effect of previous crop on the succeeding crop yield and plan nutrient (N and P) availability. The experiment consisted of eight treatments were arranged in a randomized block design with six resplications. Cropping sequence was studied that was soybean followed by corn and a continuous corn system. The effect of added P to the previous crops on the succeeding crops yield was also observed. Labelled fertilizer were used in the experiment to measure dinitrogen fixation of two soybean varieties and the amount of available nutrient in the soil by using isotopic dilution technique. The result obtained showed that corn yield was significantly influenced by cropping sequence, but available nutrient was not. Corn grown after soybean produced about 22 percent more grain than those of the continuous corn system. The phosphorus applied to the first season crops increased significantly the succeeding corn yield. The highest amount of accumulation in soybean was 81 kg N/h, around 40 percent of the amount was obtained through fixation. (authors). 19 refs.; 8 tabs

Exploring profit - Sustainability trade-offs in cropping systems using evolutionary algorithms

NARCIS (Netherlands)

DeVoil, P.; Rossing, W.A.H.; Hammer, G.L.

2006-01-01

Models that implement the bio-physical components of agro-ecosystems are ideally suited for exploring sustainability issues in cropping systems. Sustainability may be represented as a number of objectives to be maximised or minimised. However, the full decision space of these objectives is usually

Wild genius - domestic fool? Spatial learning abilities of wild and domestic guinea pigs

Directory of Open Access Journals (Sweden)

Sachser Norbert

2010-03-01

Full Text Available Abstract Background Domestic animals and their wild relatives differ in a wide variety of aspects. The process of domestication of the domestic guinea pig (Cavia aperea f. porcellus, starting at least 4500 years ago, led to changes in the anatomy, physiology, and behaviour compared with their wild relative, the wild cavy, Cavia aperea. Although domestic guinea pigs are widely used as a laboratory animal, learning and memory capabilities are often disregarded as being very scarce. Even less is known about learning and memory of wild cavies. In this regard, one striking domestic trait is a reduction in relative brain size, which in the domesticated form of the guinea pig amounts to 13%. However, the common belief, that such a reduction of brain size in the course of domestication of different species is accomplished by less learning capabilities is not at all very well established in the literature. Indeed, domestic animals might also even outperform their wild conspecifics taking advantage of their adaptation to a man-made environment. In our study we compared the spatial learning abilities of wild and domestic guinea pigs. We expected that the two forms are different regarding their learning performance possibly related to the process of domestication. Therefore wild cavies as well as domestic guinea pigs of both sexes, aged 35 to 45 days, were tested in the Morris water maze to investigate their ability of spatial learning. Results Both, wild cavies and domestic guinea pigs were able to learn the task, proving the water maze to be a suitable test also for wild cavies. Regarding the speed of learning, male as well as female domestic guinea pigs outperformed their wild conspecifics significantly. Interestingly, only domestic guinea pigs showed a significant spatial association of the platform position, while other effective search strategies were used by wild cavies. Conclusion The results demonstrate that domestic guinea pigs do not at all

Wild genius - domestic fool? Spatial learning abilities of wild and domestic guinea pigs.

Science.gov (United States)

Lewejohann, Lars; Pickel, Thorsten; Sachser, Norbert; Kaiser, Sylvia

2010-03-25

Domestic animals and their wild relatives differ in a wide variety of aspects. The process of domestication of the domestic guinea pig (Cavia aperea f. porcellus), starting at least 4500 years ago, led to changes in the anatomy, physiology, and behaviour compared with their wild relative, the wild cavy, Cavia aperea. Although domestic guinea pigs are widely used as a laboratory animal, learning and memory capabilities are often disregarded as being very scarce. Even less is known about learning and memory of wild cavies. In this regard, one striking domestic trait is a reduction in relative brain size, which in the domesticated form of the guinea pig amounts to 13%. However, the common belief, that such a reduction of brain size in the course of domestication of different species is accomplished by less learning capabilities is not at all very well established in the literature. Indeed, domestic animals might also even outperform their wild conspecifics taking advantage of their adaptation to a man-made environment.In our study we compared the spatial learning abilities of wild and domestic guinea pigs. We expected that the two forms are different regarding their learning performance possibly related to the process of domestication. Therefore wild cavies as well as domestic guinea pigs of both sexes, aged 35 to 45 days, were tested in the Morris water maze to investigate their ability of spatial learning. Both, wild cavies and domestic guinea pigs were able to learn the task, proving the water maze to be a suitable test also for wild cavies. Regarding the speed of learning, male as well as female domestic guinea pigs outperformed their wild conspecifics significantly. Interestingly, only domestic guinea pigs showed a significant spatial association of the platform position, while other effective search strategies were used by wild cavies. The results demonstrate that domestic guinea pigs do not at all perform worse than their wild relatives in tests of spatial

Can we stop transgenes from taking a walk on the wild side?

Science.gov (United States)

Dlugosch, Katrina M; Whitton, Jeannette

2008-03-01

Whether the potential costs associated with broad-scale use of genetically modified organisms (GMOs) outweigh possible benefits is highly contentious, including within the scientific community. Even among those generally in favour of commercialization of GM crops, there is nonetheless broad recognition that transgene escape into the wild should be minimized. But is it possible to achieve containment of engineered genetic elements in the context of large scale agricultural production? In a previous study, Warwick et al. (2003) documented transgene escape via gene flow from herbicide resistant (HR) canola (Brassica napus) into neighbouring weedy B. rapa populations (Fig. 1) in two agricultural fields in Quebec, Canada. In a follow-up study in this issue of Molecular Ecology, Warwick et al. (2008) show that the transgene has persisted and spread within the weedy population in the absence of selection for herbicide resistance. Certainly a trait like herbicide resistance is expected to spread when selected through the use of the herbicide, despite potentially negative epistatic effects on fitness. However, Warwick et al.'s findings suggest that direct selection favouring the transgene is not required for its persistence. So is there any hope of preventing transgene escape into the wild?

The Competitive Response Investigation of Eighteen Wheat (Triticum aestivum L. Cultivars with Wild Mustard (Sinapis arvensis L.

Directory of Open Access Journals (Sweden)

fatemeh abdolahi

2018-02-01

Full Text Available Introduction: The crop competitive ability is an important and profitable factor for increment impact on the weeds, and decreasing their yield loss. Characteristics such as height, leaf area, growth rate and tillering ability could be effective on competitive ability of cultivar ability. Primary growth rate is important on competitiveness, and any other factors that provides fast establishment of crops growth can be effective too. Thus, utilization of cultivars with height competitiveness ability is one of the considerable strategies for integrated weed managements. Many studies had shown that there are high correlation between crop height and its competitiveness ability. Asef et al (2 reported that tall cultivars reduced weed biomass more than dwarf cultivars due to light intercept and shading. Safahani- langrodi et al (32 in competition condition tall cultivars had high weed tolerance and cause to decrease weed biomass and set seed. There are an important relationship between LAI and weed competition. Hiffle et al. (13 showed cultivars with higher leaf area index had a greater yield stability. Dianat et al. (10 reported that in weed competitive conditions, there are significant difference in the number of tillers among wheat cultivars, while competitor and non-competitor cultivars have most and lowest tiller numbers respectively. Nadery and Ghadiri (25 showed that increasing wild mustard density decreased tiller number and more yield loss in weed competition have caused by decreased number of tillers. Materials and Methods: Experiment was conducted in order to study morphological characteristics and yield of wheat (T. aestivum cultivars in wild mustard (Sinapis arvensis L. competition in greenhouse, University of Mohaghegh Ardabili, during 2013-2014. Treatments were 18 wheat cultivars [Karkheh, Alborz, Azadi, Shahpasand, Sepahan, Flat, Ghods, Roshan, Sorkh¬tokhm, Moghan3, Alvand, MS-81-14, Yarvarus, Shahriyar, Golestn, Bam, Niknajad, Karaj3

Higher US crop prices trigger little area expansion so marginal land for biofuel crops is limited

International Nuclear Information System (INIS)

Swinton, Scott M.; Babcock, Bruce A.; James, Laura K.; Bandaru, Varaprasad

2011-01-01

By expanding energy biomass production on marginal lands that are not currently used for crops, food prices increase and indirect climate change effects can be mitigated. Studies of the availability of marginal lands for dedicated bioenergy crops have focused on biophysical land traits, ignoring the human role in decisions to convert marginal land to bioenergy crops. Recent history offers insights about farmer willingness to put non-crop land into crop production. The 2006-09 leap in field crop prices and the attendant 64% gain in typical profitability led to only a 2% increase in crop planted area, mostly in the prairie states. At this rate, a doubling of expected profitability from biomass crops would expand cropland supply by only 3.2%. Yet targets for cellulosic ethanol production in the US Energy Independence and Security Act imply boosting US planted area by 10% or more with perennial biomass crops. Given landowner reluctance to expand crop area with familiar crops in the short run, large scale expansion of the area in dedicated bioenergy crops will likely be difficult and costly to achieve. - Highlights: → Biofuel crops on cropland can displace food crops, reducing food supply and triggering indirect land use. → Growing biofuel crops on non-crop marginal land avoids these problems. → But US farmers expanded cropland by only 2% when crop profitability jumped 64% during 2006-09. → So medium-term availability of marginal lands for biofuel crops is limited and costly.