Improvements in 130Te double beta decay search with cryogenic TeO2 array detectors

International Nuclear Information System (INIS)

Alessandrello, A.; Brofferio, C.; Bucci, C.; Caspani, P.; Cremonesi, O.; Fiorini, E.; Giuliani, A.; Nucciotti, A.; Pavan, M.; Pessina, G.; Previtali, E.; Zanotti, L.

1996-01-01

Single crystal TeO 2 bolometers have been used since 5 years ago to search for neutrinoless DBD of 130 Te. During the last year, our group has been studying and preparing the first array of 4 crystals, 340 g each, opening this technique to new frontiers in rare events' physics. The results and perspectives of this second generation cryogenic detectors are here reported and discussed, with particular emphasis on the peculiarities which make them feasible for a consistent upgrading of our previous result in DBD search. (orig.)

Repeating pulsed magnet system for axion-like particle searches and vacuum birefringence experiments

Energy Technology Data Exchange (ETDEWEB)

Yamazaki, T., E-mail: yamazaki@icepp.s.u-tokyo.ac.jp [International Center for Elementary Particle Physics, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033 (Japan); Inada, T.; Namba, T. [International Center for Elementary Particle Physics, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033 (Japan); Asai, S. [Department of Physics, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033 (Japan); Kobayashi, T. [International Center for Elementary Particle Physics, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033 (Japan); Matsuo, A.; Kindo, K. [The Institute for Solid State Physics, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa-shi, Chiba 277-8581 (Japan); Nojiri, H. [Institute for Materials Research, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577 (Japan)

2016-10-11

We have developed a repeating pulsed magnet system which generates magnetic fields of about 10 T in a direction transverse to an incident beam over a length of 0.8 m with a repetition rate of 0.2 Hz. Its repetition rate is by two orders of magnitude higher than usual pulsed magnets. It is composed of four low resistance racetrack coils and a 30 kJ transportable capacitor bank as a power supply. The system aims at axion-like particle searches with a pulsed light source and vacuum birefringence measurements. We report on the details of the system and its performances.

Two-Stage Chaos Optimization Search Application in Maximum Power Point Tracking of PV Array

Directory of Open Access Journals (Sweden)

Lihua Wang

2014-01-01

Full Text Available In order to deliver the maximum available power to the load under the condition of varying solar irradiation and environment temperature, maximum power point tracking (MPPT technologies have been used widely in PV systems. Among all the MPPT schemes, the chaos method is one of the hot topics in recent years. In this paper, a novel two-stage chaos optimization method is presented which can make search faster and more effective. In the process of proposed chaos search, the improved logistic mapping with the better ergodic is used as the first carrier process. After finding the current optimal solution in a certain guarantee, the power function carrier as the secondary carrier process is used to reduce the search space of optimized variables and eventually find the maximum power point. Comparing with the traditional chaos search method, the proposed method can track the change quickly and accurately and also has better optimization results. The proposed method provides a new efficient way to track the maximum power point of PV array.

Hybridization of Strength Pareto Multiobjective Optimization with Modified Cuckoo Search Algorithm for Rectangular Array.

Science.gov (United States)

Abdul Rani, Khairul Najmy; Abdulmalek, Mohamedfareq; A Rahim, Hasliza; Siew Chin, Neoh; Abd Wahab, Alawiyah

2017-04-20

This research proposes the various versions of modified cuckoo search (MCS) metaheuristic algorithm deploying the strength Pareto evolutionary algorithm (SPEA) multiobjective (MO) optimization technique in rectangular array geometry synthesis. Precisely, the MCS algorithm is proposed by incorporating the Roulette wheel selection operator to choose the initial host nests (individuals) that give better results, adaptive inertia weight to control the positions exploration of the potential best host nests (solutions), and dynamic discovery rate to manage the fraction probability of finding the best host nests in 3-dimensional search space. In addition, the MCS algorithm is hybridized with the particle swarm optimization (PSO) and hill climbing (HC) stochastic techniques along with the standard strength Pareto evolutionary algorithm (SPEA) forming the MCSPSOSPEA and MCSHCSPEA, respectively. All the proposed MCS-based algorithms are examined to perform MO optimization on Zitzler-Deb-Thiele's (ZDT's) test functions. Pareto optimum trade-offs are done to generate a set of three non-dominated solutions, which are locations, excitation amplitudes, and excitation phases of array elements, respectively. Overall, simulations demonstrates that the proposed MCSPSOSPEA outperforms other compatible competitors, in gaining a high antenna directivity, small half-power beamwidth (HPBW), low average side lobe level (SLL) suppression, and/or significant predefined nulls mitigation, simultaneously.

AN OPPORTUNISTIC SEARCH FOR EXTRATERRESTRIAL INTELLIGENCE (SETI) WITH THE MURCHISON WIDEFIELD ARRAY

Energy Technology Data Exchange (ETDEWEB)

Tingay, S. J.; Tremblay, C.; Walsh, A.; Urquhart, R. [International Centre for Radio Astronomy Research (ICRAR), Curtin University, Bentley, WA 6102 (Australia)

2016-08-20

A spectral line image cube generated from 115 minutes of MWA data that covers a field of view of 400 sq, deg. around the Galactic Center is used to perform the first Search for ExtraTerrestrial Intelligence (SETI) with the Murchison Widefield Array (MWA). Our work constitutes the first modern SETI experiment at low radio frequencies, here between 103 and 133 MHz, paving the way for large-scale searches with the MWA and, in the future, the low-frequency Square Kilometre Array. Limits of a few hundred mJy beam{sup −1} for narrowband emission (10 kHz) are derived from our data, across our 400 sq. deg. field of view. Within this field, 45 exoplanets in 38 planetary systems are known. We extract spectra at the locations of these systems from our image cube to place limits on the presence of narrow line emission from these systems. We then derive minimum isotropic transmitter powers for these exoplanets; a small handful of the closest objects (10 s of pc) yield our best limits of order 10{sup 14} W (Equivalent Isotropic Radiated Power). These limits lie above the highest power directional transmitters near these frequencies currently operational on Earth. A SETI experiment with the MWA covering the full accessible sky and its full frequency range would require approximately one month of observing time. The MWA frequency range, its southern hemisphere location on an extraordinarily radio quiet site, its very large field of view, and its high sensitivity make it a unique facility for SETI.

Repeating and non-repeating fast radio bursts from binary neutron star mergers

Science.gov (United States)

Yamasaki, Shotaro; Totani, Tomonori; Kiuchi, Kenta

2018-04-01

Most fast radio bursts (FRB) do not show evidence of repetition, and such non-repeating FRBs may be produced at the time of a merger of binary neutron stars (BNS), provided that the BNS merger rate is close to the high end of the currently possible range. However, the merger environment is polluted by dynamical ejecta, which may prohibit the radio signal from propagating. We examine this by using a general-relativistic simulation of a BNS merger, and show that the ejecta appears about 1 ms after the rotation speed of the merged star becomes the maximum. Therefore there is a time window in which an FRB signal can reach outside, and the short duration of non-repeating FRBs can be explained by screening after ejecta formation. A fraction of BNS mergers may leave a rapidly rotating and stable neutron star, and such objects may be the origin of repeating FRBs like FRB 121102. We show that a merger remnant would appear as a repeating FRB on a time scale of ˜1-10 yr, and expected properties are consistent with the observations of FRB 121102. We construct an FRB rate evolution model that includes these two populations of repeating and non-repeating FRBs from BNS mergers, and show that the detection rate of repeating FRBs relative to non-repeating ones rapidly increases with improving search sensitivity. This may explain why only the repeating FRB 121102 was discovered by the most sensitive FRB search with Arecibo. Several predictions are made, including the appearance of a repeating FRB 1-10 yr after a BNS merger that is localized by gravitational waves and subsequent electromagnetic radiation.

A large air shower array to search for astrophysical sources emitting γ-rays with energies ≥1014 eV

International Nuclear Information System (INIS)

Borione, A.; Covault, C.E.; Cronin, J.W.; Fick, B.E.; Gibbs, K.G.; Krimm, H.A.; Mascarenhas, N.C.; McKay, T.A.; Mueller, D.; Newport, B.J.; Ong, R.A.; Rosenberg, L.J.; Sanders, H.; Catanese, M.; Ciampa, D.; Green, K.D.; Kolodziejczak, J.; Matthews, J.; Nitz, D.; Sinclair, D.; Van der Velde, J.C.

1994-01-01

We describe the technical details and the performance of a large array which detects both the electron and muon components in extensive air showers with energies ≥10 14 eV. The array was designed to search for γ-rays from astrophysical sources. The background of cosmic rays is reduced by the selection of muon poor events. The array consists of 1089 scintillation detectors on the surface covering an area of 0.23 km 2 and 1024 scintillation counters of 2.5 m 2 each, buried 3 m below the surface for muon detection. Each of the surface detectors has its own local electronics and local data storage controlled by a microprocessor. The array is located at Dugway, Utah USA (40.2 N, 112.8 W) where the average atmospheric depth is 870 g/cm 2 . ((orig.))

Visual search for arbitrary objects in real scenes

Science.gov (United States)

Alvarez, George A.; Rosenholtz, Ruth; Kuzmova, Yoana I.; Sherman, Ashley M.

2011-01-01

How efficient is visual search in real scenes? In searches for targets among arrays of randomly placed distractors, efficiency is often indexed by the slope of the reaction time (RT) × Set Size function. However, it may be impossible to define set size for real scenes. As an approximation, we hand-labeled 100 indoor scenes and used the number of labeled regions as a surrogate for set size. In Experiment 1, observers searched for named objects (a chair, bowl, etc.). With set size defined as the number of labeled regions, search was very efficient (~5 ms/item). When we controlled for a possible guessing strategy in Experiment 2, slopes increased somewhat (~15 ms/item), but they were much shallower than search for a random object among other distinctive objects outside of a scene setting (Exp. 3: ~40 ms/item). In Experiments 4–6, observers searched repeatedly through the same scene for different objects. Increased familiarity with scenes had modest effects on RTs, while repetition of target items had large effects (>500 ms). We propose that visual search in scenes is efficient because scene-specific forms of attentional guidance can eliminate most regions from the “functional set size” of items that could possibly be the target. PMID:21671156

Visual search for arbitrary objects in real scenes.

Science.gov (United States)

Wolfe, Jeremy M; Alvarez, George A; Rosenholtz, Ruth; Kuzmova, Yoana I; Sherman, Ashley M

2011-08-01

How efficient is visual search in real scenes? In searches for targets among arrays of randomly placed distractors, efficiency is often indexed by the slope of the reaction time (RT) × Set Size function. However, it may be impossible to define set size for real scenes. As an approximation, we hand-labeled 100 indoor scenes and used the number of labeled regions as a surrogate for set size. In Experiment 1, observers searched for named objects (a chair, bowl, etc.). With set size defined as the number of labeled regions, search was very efficient (~5 ms/item). When we controlled for a possible guessing strategy in Experiment 2, slopes increased somewhat (~15 ms/item), but they were much shallower than search for a random object among other distinctive objects outside of a scene setting (Exp. 3: ~40 ms/item). In Experiments 4-6, observers searched repeatedly through the same scene for different objects. Increased familiarity with scenes had modest effects on RTs, while repetition of target items had large effects (>500 ms). We propose that visual search in scenes is efficient because scene-specific forms of attentional guidance can eliminate most regions from the "functional set size" of items that could possibly be the target.

Evaluating the effectiveness of Washington state repeated job search services on the employment rate of prime-age female welfare recipients☆

Science.gov (United States)

Hsiao, Cheng; Shen, Yan; Wang, Boqing; Weeks, Greg

2014-01-01

This paper uses an unbalanced panel dataset to evaluate how repeated job search services (JSS) and personal characteristics affect the employment rate of the prime-age female welfare recipients in the State of Washington. We propose a transition probability model to take into account issues of sample attrition, sample refreshment and duration dependence. We also generalize Honoré and Kyriazidou’s [Honoré, B.E., Kyriazidou, E., 2000. Panel data discrete choice models with lagged dependent variables. Econometrica 68 (4), 839–874] conditional maximum likelihood estimator to allow for the presence of individual-specific effects. A limited information test is suggested to test for selection issues in non-experimental data. The specification tests indicate that the (conditional on the set of the confounding variables considered) assumptions of no selection due to unobservables and/or no unobserved individual-specific effects are not violated. Our findings indicate that the first job search service does have positive and significant impacts on the employment rate. However, providing repeated JSS to the same client has no significant impact. Further, we find that there are significant experience-enhancing effects. These findings suggest that providing one job search services training to individuals may have a lasting impact on raising their employment rates. PMID:26052178

Search in 8 TeV proton-proton collisions with the MoEDAL monopole-trapping test array

Science.gov (United States)

Pinfold, J.; Soluk, R.; Lacarrère, D.; Katre, A.; Mermod, P.; Bendtz, K.; Milstead, D.

2014-06-01

The magnetic monopole appears in theories of spontaneous gauge symmetry breaking and its existence would explain the quantisation of electric charge. MoEDAL is the latest approved LHC experiment, designed to search directly for monopoles produced in high-energy collisions. It has now taken data for the first time. The MoEDAL detectors are based on two complementary techniques: nuclear-track detectors are sensitive to the high-ionisation signature expected from a monopole, and the magnetic monopole trapper (MMT) relies on the stopping and trapping of monopoles inside an aluminium array which is then analysed with a superconducting magnetometer. The first results obtained with the MoEDAL MMT test array deployed in 2012 are presented. This experiment probes monopoles carrying a multiple of the fundamental unit magnetic charge for the first time at the LHC.

Discovery of gigantic molecular nanostructures using a flow reaction array as a search engine.

Science.gov (United States)

Zang, Hong-Ying; de la Oliva, Andreu Ruiz; Miras, Haralampos N; Long, De-Liang; McBurney, Roy T; Cronin, Leroy

2014-04-28

The discovery of gigantic molecular nanostructures like coordination and polyoxometalate clusters is extremely time-consuming since a vast combinatorial space needs to be searched, and even a systematic and exhaustive exploration of the available synthetic parameters relies on a great deal of serendipity. Here we present a synthetic methodology that combines a flow reaction array and algorithmic control to give a chemical 'real-space' search engine leading to the discovery and isolation of a range of new molecular nanoclusters based on [Mo(2)O(2)S(2)](2+)-based building blocks with either fourfold (C4) or fivefold (C5) symmetry templates and linkers. This engine leads us to isolate six new nanoscale cluster compounds: 1, {Mo(10)(C5)}; 2, {Mo(14)(C4)4(C5)2}; 3, {Mo(60)(C4)10}; 4, {Mo(48)(C4)6}; 5, {Mo(34)(C4)4}; 6, {Mo(18)(C4)9}; in only 200 automated experiments from a parameter space spanning ~5 million possible combinations.

Searching for giga-Jansky fast radio bursts from the Milky Way with a global array of low-cost radio receivers

Science.gov (United States)

Maoz, Dan; Loeb, Abraham

2017-06-01

If fast radio bursts (FRBs) originate from galaxies at cosmological distances, then their all-sky rate implies that the Milky Way may host an FRB every 30-1500 yr, on average. If many FRBs persistently repeat for decades or more, a local giant FRB could be active now, with 1 GHz radio pulses of flux ˜3 × 1010 Jy, comparable with the fluxes and frequencies detectable by cellular communication devices (cell phones, Wi-Fi and GPS). We propose searching for Galactic FRBs using a global array of low-cost radio receivers. One possibility is the ˜1 GHz communication channel in cellular phones, through a Citizens-Science downloadable application. Participating phones would continuously listen for and record candidate FRBs and would periodically upload information to a central data-processing website which will identify the signature of a real, globe-encompassing, FRB from an astronomical distance. Triangulation of the GPS-based pulse arrival times reported from different Earth locations will provide the FRB sky position, potentially to arcsecond accuracy. Pulse arrival times versus frequency, from reports from phones operating at diverse frequencies, or from fast signal de-dispersion by the application, will yield the dispersion measure (DM). Compared to a Galactic DM model, it will indicate the source distance within the Galaxy. A variant approach uses the built-in ˜100 MHz FM-radio receivers present in cell phones for an FRB search at lower frequencies. Alternatively, numerous 'software-defined radio' devices, costing ˜$10 US each, could be deployed and plugged into USB ports of personal computers (particularly in radio-quiet locations) to establish the global network of receivers.

Design, fabrication, and calibration of a cryogenic search-coil array for harmonic analysis of quadrupole magnets

International Nuclear Information System (INIS)

Green, M.I.; Barale, P.J.; Hassenzahl, W.V.; Nelson, D.H.; O'Neill, J.W.; Schafer, R.V.; Taylor, C.E.

1987-09-01

A cryogenic search-coil array has been fabricated at LBL for harmonic error analysis of SSC model quadrupoles. It consists of three triplets of coils; the center-coil triplet is 10 cm long, and the end coil triplets are 70 cm long. Design objectives are a high bucking ratio for the dipole and quadrupole signals and utility at cryogenic operating currents (∼6 kA) with sufficient sensitivity for use at room-temperature currents (∼10 A). the design and fabrication are described. Individual coils are mechanically measured to +-5 μm, and their magnetic areas measured to 0.05%. A computer program has been developed to predict the quadrupole and dipole bucking ratios from the mechanical and magnetic measurements. The calibration procedure and accuracy of the array are specified. Results of measurements of SSC model quadrupoles are presented. 1 ref., 4 figs

Deformable wire array: fiber drawn tunable metamaterials

DEFF Research Database (Denmark)

Fleming, Simon; Stefani, Alessio; Tang, Xiaoli

2017-01-01

By fiber drawing we fabricate a wire array metamaterial, the structure of which can be actively modified. The plasma frequency can be tuned by 50% by compressing the metamaterial; recovers when released and the process can be repeated.......By fiber drawing we fabricate a wire array metamaterial, the structure of which can be actively modified. The plasma frequency can be tuned by 50% by compressing the metamaterial; recovers when released and the process can be repeated....

Mastering Search Analytics Measuring SEO, SEM and Site Search

CERN Document Server

Chaters, Brent

2011-01-01

Many companies still approach Search Engine Optimization (SEO) and paid search as separate initiatives. This in-depth guide shows you how to use these programs as part of a comprehensive strategy-not just to improve your site's search rankings, but to attract the right people and increase your conversion rate. Learn how to measure, test, analyze, and interpret all of your search data with a wide array of analytic tools. Gain the knowledge you need to determine the strategy's return on investment. Ideal for search specialists, webmasters, and search marketing managers, Mastering Search Analyt

Comparing the effect of temporal delay on the availability of egocentric and allocentric information in visual search.

Science.gov (United States)

Ball, Keira; Birch, Yan; Lane, Alison; Ellison, Amanda; Schenk, Thomas

2017-07-28

Frames of reference play a central role in perceiving an object's location and reaching to pick that object up. It is thought that the ventral stream, believed to subserve vision for perception, utilises allocentric coding, while the dorsal stream, argued to be responsible for vision for action, primarily uses an egocentric reference frame. We have previously shown that egocentric representations can survive a delay; however, it is possible that in comparison to allocentric information, egocentric information decays more rapidly. Here we directly compare the effect of delay on the availability of egocentric and allocentric representations. We used spatial priming in visual search and repeated the location of the target relative to either a landmark in the search array (allocentric condition) or the observer's body (egocentric condition). Three inter-trial intervals created minimum delays between two consecutive trials of 2, 4, or 8seconds. In both conditions, search times to primed locations were faster than search times to un-primed locations. In the egocentric condition the effects were driven by a reduction in search times when egocentric information was repeated, an effect that was observed at all three delays. In the allocentric condition while search times did not change when the allocentric information was repeated, search times to un-primed target locations became slower. We conclude that egocentric representations are not as transient as previously thought but instead this information is still available, and can influence behaviour, after lengthy periods of delay. We also discuss the possible origins of the differences between allocentric and egocentric priming effects. Copyright © 2017 Elsevier B.V. All rights reserved.

A search for optical bursts from the repeating fast radio burst FRB 121102

Science.gov (United States)

Hardy, L. K.; Dhillon, V. S.; Spitler, L. G.; Littlefair, S. P.; Ashley, R. P.; De Cia, A.; Green, M. J.; Jaroenjittichai, P.; Keane, E. F.; Kerry, P.; Kramer, M.; Malesani, D.; Marsh, T. R.; Parsons, S. G.; Possenti, A.; Rattanasoon, S.; Sahman, D. I.

2017-12-01

We present a search for optical bursts from the repeating fast radio burst FRB 121102 using simultaneous observations with the high-speed optical camera ULTRASPEC on the 2.4-m Thai National Telescope and radio observations with the 100-m Effelsberg Radio Telescope. A total of 13 radio bursts were detected, but we found no evidence for corresponding optical bursts in our 70.7-ms frames. The 5σ upper limit to the optical flux density during our observations is 0.33 mJy at 767 nm. This gives an upper limit for the optical burst fluence of 0.046 Jy ms, which constrains the broad-band spectral index of the burst emission to α ≤ -0.2. Two of the radio pulses are separated by just 34 ms, which may represent an upper limit on a possible underlying periodicity (a rotation period typical of pulsars), or these pulses may have come from a single emission window that is a small fraction of a possible period.

Meta-heuristic cuckoo search algorithm for the correction of faulty array antenna

International Nuclear Information System (INIS)

Khan, S.U.; Qureshi, I.M.

2015-01-01

In this article, we introduce a CSA (Cuckoo Search Algorithm) for compensation of faulty array antenna. It is assumed that the faulty elemental location is also known. When the sensor fails, it disturbs the power pattern, owing to which its SLL (Sidelobe Level) raises and nulls are shifted from their required positions. In this approach, the CSA optimizes the weights of the active elements for the reduction of SLL and null position in the desired direction. The meta-heuristic CSA is used for the control of SLL and steering of nulls at their required positions. The CSA is based on the necessitated kids bloodsucking behavior of cuckoo sort in arrangement with the Levy flight manners. The fitness function is used to reduce the error between the preferred and probable pattern along with null constraints. Imitational consequences for various scenarios are given to exhibit the validity and presentation of the proposed method. (author)

Preliminary results from the Chicago air shower array and the Michigan muon array

International Nuclear Information System (INIS)

Krimm, H.A.; Cronin, J.W.; Fick, B.E.; Gibbs, K.G.; Mascarenhas, N.C.; McKay, T.A.; Mueller, D.; Newport, B.J.; Ong, R.A.; Rosenberg, L.J.; Wiedenbeck, M.E.; Green, K.D.; Matthews, J.; Nitz, D.; Sinclair, D.; van der Velde, J.C.

1991-01-01

The Chicago Air Shower Array (CASA) is a large area surface array designed to detect extensive air showers (EAS) produced by primaries with energy ∼100 TeV. It operates in coincidence with the underground Michigan Muon Array (MIA). Preliminary results are presented from a search for steady emission and daily emission from three astrophysical sources: Cygnus X-3, Hercules X-1, and the Crab nebula and pulsar. There is no evidence for a significant signal from any of these sources in the 1989 data

Search Engines for Tomorrow's Scholars

Science.gov (United States)

Fagan, Jody Condit

2011-01-01

Today's scholars face an outstanding array of choices when choosing search tools: Google Scholar, discipline-specific abstracts and index databases, library discovery tools, and more recently, Microsoft's re-launch of their academic search tool, now dubbed Microsoft Academic Search. What are these tools' strengths for the emerging needs of…

Searching for Survivors through Random Human-Body Movement Outdoors by Continuous-Wave Radar Array.

Science.gov (United States)

Li, Chuantao; Chen, Fuming; Qi, Fugui; Liu, Miao; Li, Zhao; Liang, Fulai; Jing, Xijing; Lu, Guohua; Wang, Jianqi

2016-01-01

It is a major challenge to search for survivors after chemical or nuclear leakage or explosions. At present, biological radar can be used to achieve this goal by detecting the survivor's respiration signal. However, owing to the random posture of an injured person at a rescue site, the radar wave may directly irradiate the person's head or feet, in which it is difficult to detect the respiration signal. This paper describes a multichannel-based antenna array technology, which forms an omnidirectional detection system via 24-GHz Doppler biological radar, to address the random positioning relative to the antenna of an object to be detected. Furthermore, since the survivors often have random body movement such as struggling and twitching, the slight movements of the body caused by breathing are obscured by these movements. Therefore, a method is proposed to identify random human-body movement by utilizing multichannel information to calculate the background variance of the environment in combination with a constant-false-alarm-rate detector. The conducted outdoor experiments indicate that the system can realize the omnidirectional detection of random human-body movement and distinguish body movement from environmental interference such as movement of leaves and grass. The methods proposed in this paper will be a promising way to search for survivors outdoors.

Detecting Microsatellites in Genome Data: Variance in Definitions and Bioinformatic Approaches Cause Systematic Bias

Directory of Open Access Journals (Sweden)

Angelika Merkel

2008-01-01

Full Text Available Microsatellites are currently one of the most commonly used genetic markers. The application of bioinformatic tools has become common practice in the study of these short tandem repeats (STR. However, in silico studies can suffer from study bias. Using a meta-analysis on microsatellite distribution in yeast we show that estimates of numbers of repeats reported by different studies can differ in the order of several magnitudes, even within a single genome. These differences arise because varying definitions of microsatellites, spanning repeat size, array length and array composition, are used in different search paradigms, with minimum array length being the main influencing factor. Structural differences in the implemented search algorithm additionally contribute to variation in the number of repeats detected. We suggest that for future studies a consistent approach to STR searches is adopted in order to improve the power of intra- and interspecific comparisons

Episodic retrieval and feature facilitation in intertrial priming of visual search

DEFF Research Database (Denmark)

Asgeirsson, Arni Gunnar; Kristjánsson, Árni

2011-01-01

Abstract Huang, Holcombe, and Pashler (Memory & Cognition, 32, 12–20, 2004) found that priming from repetition of different features of a target in a visual search task resulted in significant response time (RT) reductions when both target brightness and size were repeated. But when only one...... feature was repeated and the other changed, RTs were longer than when neither feature was repeated. From this, they argued that priming in visual search reflected episodic retrieval of memory traces, rather than facilitation of repeated features. We tested different varia- tions of the search task...

Searching for Survivors through Random Human-Body Movement Outdoors by Continuous-Wave Radar Array

Science.gov (United States)

Liu, Miao; Li, Zhao; Liang, Fulai; Jing, Xijing; Lu, Guohua; Wang, Jianqi

2016-01-01

It is a major challenge to search for survivors after chemical or nuclear leakage or explosions. At present, biological radar can be used to achieve this goal by detecting the survivor’s respiration signal. However, owing to the random posture of an injured person at a rescue site, the radar wave may directly irradiate the person’s head or feet, in which it is difficult to detect the respiration signal. This paper describes a multichannel-based antenna array technology, which forms an omnidirectional detection system via 24-GHz Doppler biological radar, to address the random positioning relative to the antenna of an object to be detected. Furthermore, since the survivors often have random body movement such as struggling and twitching, the slight movements of the body caused by breathing are obscured by these movements. Therefore, a method is proposed to identify random human-body movement by utilizing multichannel information to calculate the background variance of the environment in combination with a constant-false-alarm-rate detector. The conducted outdoor experiments indicate that the system can realize the omnidirectional detection of random human-body movement and distinguish body movement from environmental interference such as movement of leaves and grass. The methods proposed in this paper will be a promising way to search for survivors outdoors. PMID:27073860

Visual search for features and conjunctions in development.

Science.gov (United States)

Lobaugh, N J; Cole, S; Rovet, J F

1998-12-01

Visual search performance was examined in three groups of children 7 to 12 years of age and in young adults. Colour and orientation feature searches and a conjunction search were conducted. Reaction time (RT) showed expected improvements in processing speed with age. Comparisons of RT's on target-present and target-absent trials were consistent with parallel search on the two feature conditions and with serial search in the conjunction condition. The RT results indicated searches for feature and conjunctions were treated similarly for children and adults. However, the youngest children missed more targets at the largest array sizes, most strikingly in conjunction search. Based on an analysis of speed/accuracy trade-offs, we suggest that low target-distractor discriminability leads to an undersampling of array elements, and is responsible for the high number of misses in the youngest children.

A pilot trial assessing urinary gene expression profiling with an mRNA array for diabetic nephropathy.

Directory of Open Access Journals (Sweden)

Min Zheng

Full Text Available BACKGROUND: The initiation and progression of diabetic nephropathy (DN is complex. Quantification of mRNA expression in urinary sediment has emerged as a novel strategy for studying renal diseases. Considering the numerous molecules involved in DN development, a high-throughput platform with parallel detection of multiple mRNAs is needed. In this study, we constructed a self-assembling mRNA array to analyze urinary mRNAs in DN patients with aims to reveal its potential in searching novel biomarkers. METHODS: mRNA array containing 88 genes were fabricated and its performance was evaluated. A pilot study with 9 subjects including 6 DN patients and 3 normal controls were studied with the array. DN patients were assigned into two groups according to their estimate glomerular rate (eGFR: DNI group (eGFR>60 ml/min/1.73 m(2, n = 3 and DNII group (eGFR<60 ml/min/1.73 m(2, n = 3. Urinary cell pellet was collected from each study participant. Relative abundance of these target mRNAs from urinary pellet was quantified with the array. RESULTS: The array we fabricated displayed high sensitivity and specificity. Moreover, the Cts of Positive PCR Controls in our experiments were 24±0.5 which indicated high repeatability of the array. A total of 29 mRNAs were significantly increased in DN patients compared with controls (p<0.05. Among these genes, α-actinin4, CDH2, ACE, FAT1, synaptopodin, COL4α, twist, NOTCH3 mRNA expression were 15-fold higher than those in normal controls. In contrast, urinary TIMP-1 mRNA was significantly decreased in DN patients (p<0.05. It was shown that CTGF, MCP-1, PAI-1, ACE, CDH1, CDH2 mRNA varied significantly among the 3 study groups, and their mRNA levels increased with DN progression (p<0.05. CONCLUSION: Our pilot study demonstrated that mRNA array might serve as a high-throughput and sensitive tool for detecting mRNA expression in urinary sediment. Thus, this primary study indicated that mRNA array probably could be a

Large Torque Variations in Two Soft Gamma Repeaters

NARCIS (Netherlands)

Woods, P.M.; Kouveliotou, C.; Göğüş, E.; Finger, M.H.; Swank, J.; Markwardt, C.B.; Hurley, K.; van der Klis, M.

2002-01-01

We have monitored the pulse frequencies of the two soft gamma repeaters SGR 1806-20 and SGR 1900+14 through the beginning of year 2001 using primarily Rossi X-Ray Timing Explorer Proportional Counter Array observations. In both sources, we observe large changes in the spin-down torque up to a factor

Accelerating object detection via a visual-feature-directed search cascade: algorithm and field programmable gate array implementation

Science.gov (United States)

Kyrkou, Christos; Theocharides, Theocharis

2016-07-01

Object detection is a major step in several computer vision applications and a requirement for most smart camera systems. Recent advances in hardware acceleration for real-time object detection feature extensive use of reconfigurable hardware [field programmable gate arrays (FPGAs)], and relevant research has produced quite fascinating results, in both the accuracy of the detection algorithms as well as the performance in terms of frames per second (fps) for use in embedded smart camera systems. Detecting objects in images, however, is a daunting task and often involves hardware-inefficient steps, both in terms of the datapath design and in terms of input/output and memory access patterns. We present how a visual-feature-directed search cascade composed of motion detection, depth computation, and edge detection, can have a significant impact in reducing the data that needs to be examined by the classification engine for the presence of an object of interest. Experimental results on a Spartan 6 FPGA platform for face detection indicate data search reduction of up to 95%, which results in the system being able to process up to 50 1024×768 pixels images per second with a significantly reduced number of false positives.

Search for correlations between the arrival directions of IceCube neutrino events and ultrahigh-energy cosmic rays detected by the Pierre Auger Observatory and the Telescope Array

NARCIS (Netherlands)

Collaboration, The IceCube; Aartsen, M. G.; Abraham, K.; Ackermann, M.; Adams, J.; Aguilar, J. A.; Ahlers, M.; Ahrens, M.; Altmann, D.; Anderson, T.; Ansseau, I.; Archinger, M.; Arguelles, C.; Arlen, T. C.; Auffenberg, J.; Bai, X.; Barwick, S. W.; Baum, V.; Bay, R.; Beatty, J. J.; Tjus, J. Becker; Becker, K. -H.; Beiser, E.; Berghaus, P.; Berley, D.; Bernardini, E.; Bernhard, A.; Besson, D. Z.; Binder, G.; Bindig, D.; Bissok, M.; Blaufuss, E.; Blumenthal, J.; Boersma, D. J.; Bohm, C.; Börner, M.; Bos, F.; Bose, D.; Böser, S.; Botner, O.; Braun, J.; Brayeur, L.; Bretz, H. -P.; Buzinsky, N.; Casey, J.; Casier, M.; Cheung, E.; Chirkin, D.; Christov, A.; Clark, K.; Classen, L.; Coenders, S.; Cowen, D. F.; Silva, A. H. Cruz; Daughhetee, J.; Davis, J. C.; Day, M.; André, J. P. A. M. de; Clercq, C. De; Rosendo, E. del Pino; Dembinski, H.; Ridder, S. De; Desiati, P.; Vries, K. D. de; Wasseige, G. de; With, M. de; DeYoung, T.; Díaz-Vélez, J. C.; Lorenzo, V. di; Dumm, J. P.; Dunkman, M.; Eberhardt, B.; Ehrhardt, T.; Eichmann, B.; Euler, S.; Evenson, P. A.; Fahey, S.; Fazely, A. R.; Feintzeig, J.; Felde, J.; Filimonov, K.; Finley, C.; Fischer-Wasels, T.; Flis, S.; Fösig, C. -C.; Fuchs, T.; Gaisser, T. K.; Gaior, R.; Gallagher, J.; Gerhardt, L.; Ghorbani, K.; Gier, D.; Gladstone, L.; Glagla, M.; Glüsenkamp, T.; Goldschmidt, A.; Golup, G.; Gonzalez, J. G.; Góra, D.; Grant, D.; Griffith, Z.; Groß, A.; Ha, C.; Haack, C.; Ismail, A. Haj; Hallgren, A.; Halzen, F.; Hansen, E.; Hansmann, B.; Hanson, K.; Hebecker, D.; Heereman, D.; Helbing, K.; Hellauer, R.; Hickford, S.; Hignight, J.; Hill, G. C.; Hoffman, K. D.; Hoffmann, R.; Holzapfel, K.; Homeier, A.; Hoshina, K.; Huang, F.; Huber, M.; Huelsnitz, W.; Hulth, P. O.; Hultqvist, K.; In, S.; Ishihara, A.; Jacobi, E.; Japaridze, G. S.; Jeong, M.; Jero, K.; Jurkovic, M.; Kappes, A.; Karg, T.; Karle, A.; Kauer, M.; Keivani, A.; Kelley, J. L.; Kemp, J.; Kheirandish, A.; Kiryluk, J.; Kläs, J.; Klein, S. R.; Kohnen, G.; Koirala, R.; Kolanoski, H.; Konietz, R.; Köpke, L.; Kopper, C.; Kopper, S.; Koskinen, D. J.; Kowalski, M.; Krings, K.; Kroll, G.; Kroll, M.; Krückl, G.; Kunnen, J.; Kurahashi, N.; Kuwabara, T.; Labare, M.; Lanfranchi, J. L.; Larson, M. J.; Lesiak-Bzdak, M.; Leuermann, M.; Leuner, J.; Lu, L.; Lünemann, J.; Madsen, J.; Maggi, G.; Mahn, K. B. M.; Mandelartz, M.; Maruyama, R.; Mase, K.; Matis, H. S.; Maunu, R.; McNally, F.; Meagher, K.; Medici, M.; Meli, A.; Menne, T.; Merino, G.; Meures, T.; Miarecki, S.; Middell, E.; Mohrmann, L.; Montaruli, T.; Morse, R.; Nahnhauer, R.; Naumann, U.; Neer, G.; Niederhausen, H.; Nowicki, S. C.; Nygren, D. R.; Pollmann, A. Obertacke; Olivas, A.; Omairat, A.; O'Murchadha, A.; Palczewski, T.; Pandya, H.; Pankova, D. V.; Paul, L.; Pepper, J. A.; Heros, C. Pérez de los; Pfendner, C.; Pieloth, D.; Pinat, E.; Posselt, J.; Price, P. B.; Przybylski, G. T.; Quinnan, M.; Raab, C.; Rädel, L.; Rameez, M.; Rawlins, K.; Reimann, R.; Relich, M.; Resconi, E.; Rhode, W.; Richman, M.; Richter, S.; Riedel, B.; Robertson, S.; Rongen, M.; Rott, C.; Ruhe, T.; Ryckbosch, D.; Sabbatini, L.; Sander, H. -G.; Sandrock, A.; Sandroos, J.; Sarkar, S.; Schatto, K.; Schimp, M.; Schmidt, T.; Schoenen, S.; Schöneberg, S.; Schönwald, A.; Schulte, L.; Schumacher, L.; Seckel, D.; Seunarine, S.; Soldin, D.; Song, M.; Spiczak, G. M.; Spiering, C.; Stahlberg, M.; Stamatikos, M.; Stanev, T.; Stasik, A.; Steuer, A.; Stezelberger, T.; Stokstad, R. G.; Stößl, A.; Ström, R.; Strotjohann, N. L.; Sullivan, G. W.; Sutherland, M.; Taavola, H.; Taboada, I.; Tatar, J.; Ter-Antonyan, S.; Terliuk, A.; Tešić, G.; Tilav, S.; Toale, P. A.; Tobin, M. N.; Toscano, S.; Tosi, D.; Tselengidou, M.; Turcati, A.; Unger, E.; Usner, M.; Vallecorsa, S.; Vandenbroucke, J.; Eijndhoven, N. van; Vanheule, S.; Santen, J. van; Veenkamp, J.; Vehring, M.; Voge, M.; Vraeghe, M.; Walck, C.; Wallace, A.; Wallraff, M.; Wandkowsky, N.; Weaver, Ch; Wendt, C.; Westerhoff, S.; Whelan, B. J.; Wiebe, K.; Wiebusch, C. H.; Wille, L.; Williams, D. R.; Wissing, H.; Wolf, M.; Wood, T. R.; Woschnagg, K.; Xu, D. L.; Xu, X. W.; Xu, Y.; Yanez, J. P.; Yodh, G.; Yoshida, S.; Collaboration, M. Zoll The Pierre Auger; Aab, A.; Abreu, P.; Aglietta, M.; Ahn, E. J.; Samarai, I. Al; Albuquerque, I. F. M.; Allekotte, I.; Allison, P.; Almela, A.; Castillo, J. Alvarez; Alvarez-Muñiz, J.; Batista, R. Alves; Ambrosio, M.; Aminaei, A.; Anchordoqui, L.; Andrada, B.; Andringa, S.; Aramo, C.; Arqueros, F.; Arsene, N.; Asorey, H.; Assis, P.; Aublin, J.; Avila, G.; Awal, N.; Badescu, A. M.; Baus, C.; Beatty, J. J.; Becker, K. H.; Bellido, J. A.; Berat, C.; Bertaina, M. E.; Bertou, X.; Biermann, P. L.; Billoir, P.; Blaess, S. G.; Blanco, A.; Blanco, M.; Blazek, J.; Bleve, C.; Blümer, H.; Boháčová, M.; Boncioli, D.; Bonifazi, C.; Borodai, N.; Botti, A. M.; Brack, J.; Brancus, I.; Bretz, T.; Bridgeman, A.; Briechle, F. L.; Buchholz, P.; Bueno, A.; Buitink, S.; Buscemi, M.; Caballero-Mora, K. S.; Caccianiga, B.; Caccianiga, L.; Candusso, M.; Caramete, L.; Caruso, R.; Castellina, A.; Cataldi, G.; Cazon, L.; Cester, R.; Chavez, A. G.; Chiavassa, A.; Chinellato, J. A.; Diaz, J. C. Chirinos; Chudoba, J.; Clay, R. W.; Colalillo, R.; Coleman, A.; Collica, L.; Coluccia, M. R.; Conceição, R.; Contreras, F.; Cooper, M. J.; Cordier, A.; Coutu, S.; Covault, C. E.; Dallier, R.; D'Amico, S.; Daniel, B.; Dasso, S.; Daumiller, K.; Dawson, B. R.; Almeida, R. M. de; Jong, S. J. de; Mauro, G. De; Neto, J. R. T. de Mello; Mitri, I. De; Oliveira, J. de; Souza, V. de; Debatin, J.; Peral, L. del; Deligny, O.; Dhital, N.; Giulio, C. Di; Matteo, A. Di; Castro, M. L. Díaz; Diogo, F.; Dobrigkeit, C.; Docters, W.; D'Olivo, J. C.; Dorofeev, A.; Anjos, R. C. dos; Dova, M. T.; Dundovic, A.; Ebr, J.; Engel, R.; Erdmann, M.; Erfani, M.; Escobar, C. O.; Espadanal, J.; Etchegoyen, A.; Falcke, H.; Fang, K.; Farrar, G.; Fauth, A. C.; Fazzini, N.; Ferguson, A. P.; Fick, B.; Figueira, J. M.; Filevich, A.; Filipčič, A.; Fratu, O.; Freire, M. M.; Fujii, T.; Fuster, A.; Gallo, F.; García, B.; Garcia-Gamez, D.; Garcia-Pinto, D.; Gate, F.; Gemmeke, H.; Gherghel-Lascu, A.; Ghia, P. L.; Giaccari, U.; Giammarchi, M.; Giller, M.; Głas, D.; Glaser, C.; Glass, H.; Golup, G.; Berisso, M. Gómez; Vitale, P. F. Gómez; González, N.; Gookin, B.; Gordon, J.; Gorgi, A.; Gorham, P.; Gouffon, P.; Griffith, N.; Grillo, A. F.; Grubb, T. D.; Guarino, F.; Guedes, G. P.; Hampel, M. R.; Hansen, P.; Harari, D.; Harrison, T. A.; Harton, J. L.; Hasankiadeh, Q.; Haungs, A.; Hebbeker, T.; Heck, D.; Heimann, P.; Herve, A. E.; Hill, G. C.; Hojvat, C.; Hollon, N.; Holt, E.; Homola, P.; Hörandel, J. R.; Horvath, P.; Hrabovský, M.; Huege, T.; Insolia, A.; Isar, P. G.; Jandt, I.; Jansen, S.; Jarne, C.; Johnsen, J. A.; Josebachuili, M.; Kääpä, A.; Kambeitz, O.; Kampert, K. H.; Kasper, P.; Katkov, I.; Keilhauer, B.; Kemp, E.; Kieckhafer, R. M.; Klages, H. O.; Kleifges, M.; Kleinfeller, J.; Krause, R.; Krohm, N.; Kuempel, D.; Mezek, G. Kukec; Kunka, N.; Awad, A. Kuotb; LaHurd, D.; Latronico, L.; Lauer, R.; Lauscher, M.; Lautridou, P.; Lebrun, D.; Lebrun, P.; Oliveira, M. A. Leigui de; Letessier-Selvon, A.; Lhenry-Yvon, I.; Link, K.; Lopes, L.; López, R.; Casado, A. López; Lucero, A.; Malacari, M.; Mallamaci, M.; Mandat, D.; Mantsch, P.; Mariazzi, A. G.; Marin, V.; Mariş, I. C.; Marsella, G.; Martello, D.; Martinez, H.; Bravo, O. Martínez; Meza, J. J. Masías; Mathes, H. J.; Mathys, S.; Matthews, J.; Matthews, J. A. J.; Matthiae, G.; Maurizio, D.; Mayotte, E.; Mazur, P. O.; Medina, C.; Medina-Tanco, G.; Mello, V. B. B.; Melo, D.; Menshikov, A.; Messina, S.; Micheletti, M. I.; Middendorf, L.; Minaya, I. A.; Miramonti, L.; Mitrica, B.; Molina-Bueno, L.; Mollerach, S.; Montanet, F.; Morello, C.; Mostafá, M.; Moura, C. A.; Müller, G.; Muller, M. A.; Müller, S.; Naranjo, I.; Navas, S.; Necesal, P.; Nellen, L.; Nelles, A.; Neuser, J.; Nguyen, P. H.; Niculescu-Oglinzanu, M.; Niechciol, M.; Niemietz, L.; Niggemann, T.; Nitz, D.; Nosek, D.; Novotny, V.; Nožka, H.; Núñez, L. A.; Ochilo, L.; Oikonomou, F.; Olinto, A.; Pacheco, N.; Selmi-Dei, D. Pakk; Palatka, M.; Pallotta, J.; Papenbreer, P.; Parente, G.; Parra, A.; Paul, T.; Pech, M.; Pękala, J.; Pelayo, R.; Peña-Rodriguez, J.; Pepe, I. M.; Perrone, L.; Petermann, E.; Peters, C.; Petrera, S.; Phuntsok, J.; Piegaia, R.; Pierog, T.; Pieroni, P.; Pimenta, M.; Pirronello, V.; Platino, M.; Plum, M.; Porowski, C.; Prado, R. R.; Privitera, P.; Prouza, M.; Quel, E. J.; Querchfeld, S.; Quinn, S.; Rautenberg, J.; Ravel, O.; Ravignani, D.; Reinert, D.; Revenu, B.; Ridky, J.; Risse, M.; Ristori, P.; Rizi, V.; Carvalho, W. Rodrigues de; Rojo, J. Rodriguez; Rodríguez-Frías, M. D.; Rogozin, D.; Rosado, J.; Roth, M.; Roulet, E.; Rovero, A. C.; Saffi, S. J.; Saftoiu, A.; Salazar, H.; Saleh, A.; Greus, F. Salesa; Salina, G.; Gomez, J. D. Sanabria; Sánchez, F.; Sanchez-Lucas, P.; Santos, E. M.; Santos, E.; Sarazin, F.; Sarkar, B.; Sarmento, R.; Sarmiento-Cano, C.; Sato, R.; Scarso, C.; Schauer, M.; Scherini, V.; Schieler, H.; Schmidt, D.; Scholten, O.; Schoorlemmer, H.; Schovánek, P.; Schröder, F. G.; Schulz, A.; Schulz, J.; Schumacher, J.; Segreto, A.; Settimo, M.; Shadkam, A.; Shellard, R. C.; Sigl, G.; Sima, O.; Śmiałkowski, A.; Šmída, R.; Snow, G. R.; Sommers, P.; Sonntag, S.; Sorokin, J.; Squartini, R.; Stanca, D.; Stanič, S.; Stapleton, J.; Stasielak, J.; Stephan, M.; Strafella, F.; Stutz, A.; Suarez, F.; Durán, M. Suarez; Suomijärvi, T.; Supanitsky, A. D.; Sutherland, M. S.; Swain, J.; Szadkowski, Z.; Taborda, O. A.; Tapia, A.; Tepe, A.; Theodoro, V. M.; Timmermans, C.; Peixoto, C. J. Todero; Toma, G.; Tomankova, L.; Tomé, B.; Tonachini, A.; Elipe, G. Torralba; Machado, D. Torres; Travnicek, P.; Trini, M.; Ulrich, R.; Unger, M.; Urban, M.; Galicia, J. F. Valdés; Valiño, I.; Valore, L.; Aar, G. van; Bodegom, P. van; Berg, A. M. van den; Vliet, A. van; Varela, E.; Cárdenas, B. Vargas; Varner, G.; Vasquez, R.; Vázquez, J. R.; Vázquez, R. A.; Veberič, D.; Verzi, V.; Vicha, J.; Videla, M.; Villaseñor, L.; Vorobiov, S.; Wahlberg, H.; Wainberg, O.; Walz, D.; Watson, A. A.; Weber, M.; Weidenhaupt, K.; Weindl, A.; Wiencke, L.; Wilczyński, H.; Winchen, T.; Wittkowski, D.; Wundheiler, B.; Wykes, S.; Yang, L.; Yapici, T.; Yushkov, A.; Zas, E.; Zavrtanik, D.; Zavrtanik, M.; Zepeda, A.; Zimmermann, B.; Ziolkowski, M.; Zong, Z.; Collaboration, F. Zuccarello The Telescope Array; Abbasi, R. U.; Abe, M.; Abu-Zayyad, T.; Allen, M.; Azuma, R.; Barcikowski, E.; Belz, J. W.; Bergman, D. R.; Blake, S. A.; Cady, R.; Chae, M. J.; Cheon, B. G.; Chiba, J.; Chikawa, M.; Cho, W. R.; Fujii, T.; Fukushima, M.; Goto, T.; Hanlon, W.; Hayashi, Y.; Hayashida, N.; Hibino, K.; Honda, K.; Ikeda, D.; Inoue, N.; Ishii, T.; Ishimori, R.; Ito, H.; Ivanov, D.; Jui, C. C. H.; Kadota, K.; Kakimoto, F.; Kalashev, O.; Kasahara, K.; Kawai, H.; Kawakami, S.; Kawana, S.; Kawata, K.; Kido, E.; Kim, H. B.; Kim, J. H.; Kim, J. H.; Kitamura, S.; Kitamura, Y.; Kuzmin, V.; Kwon, Y. J.; Lan, J.; Lim, S. I.; Lundquist, J. P.; Machida, K.; Martens, K.; Matsuda, T.; Matsuyama, T.; Matthews, J. N.; Minamino, M.; Mukai, Y.; Myers, I.; Nagasawa, K.; Nagataki, S.; Nakamura, T.; Nonaka, T.; Nozato, A.; Ogio, S.; Ogura, J.; Ohnishi, M.; Ohoka, H.; Oki, K.; Okuda, T.; Ono, M.; Oshima, A.; Ozawa, S.; Park, I. H.; Pshirkov, M. S.; Rodriguez, D. C.; Rubtsov, G.; Ryu, D.; Sagawa, H.; Sakurai, N.; Scott, L. M.; Shah, P. D.; Shibata, F.; Shibata, T.; Shimodaira, H.; Shin, B. K.; Shin, H. S.; Smith, J. D.; Sokolsky, P.; Springer, R. W.; Stokes, B. T.; Stratton, S. R.; Stroman, T. A.; Suzawa, T.; Takamura, M.; Takeda, M.; Takeishi, R.; Taketa, A.; Takita, M.; Tameda, Y.; Tanaka, H.; Tanaka, K.; Tanaka, M.; Thomas, S. B.; Thomson, G. B.; Tinyakov, P.; Tkachev, I.; Tokuno, H.; Tomida, T.; Troitsky, S.; Tsunesada, Y.; Tsutsumi, K.; Uchihori, Y.; Udo, S.; Urban, F.; Vasiloff, G.; Wong, T.; Yamane, R.; Yamaoka, H.; Yamazaki, K.; Yang, J.; Yashiro, K.; Yoneda, Y.; Yoshida, S.; Yoshii, H.; Zollinger, R.; Zundel, Z.

2015-01-01

This paper presents the results of different searches for correlations between very high-energy neutrino candidates detected by IceCube and the highest-energy cosmic rays measured by the Pierre Auger Observatory and the Telescope Array. We first consider samples of cascade neutrino events and of

Synthesis of concentric circular antenna arrays using dragonfly algorithm

Science.gov (United States)

Babayigit, B.

2018-05-01

Due to the strong non-linear relationship between the array factor and the array elements, concentric circular antenna array (CCAA) synthesis problem is challenging. Nature-inspired optimisation techniques have been playing an important role in solving array synthesis problems. Dragonfly algorithm (DA) is a novel nature-inspired optimisation technique which is based on the static and dynamic swarming behaviours of dragonflies in nature. This paper presents the design of CCAAs to get low sidelobes using DA. The effectiveness of the proposed DA is investigated in two different (with and without centre element) cases of two three-ring (having 4-, 6-, 8-element or 8-, 10-, 12-element) CCAA design. The radiation pattern of each design cases is obtained by finding optimal excitation weights of the array elements using DA. Simulation results show that the proposed algorithm outperforms the other state-of-the-art techniques (symbiotic organisms search, biogeography-based optimisation, sequential quadratic programming, opposition-based gravitational search algorithm, cat swarm optimisation, firefly algorithm, evolutionary programming) for all design cases. DA can be a promising technique for electromagnetic problems.

SURVEYING THE DYNAMIC RADIO SKY WITH THE LONG WAVELENGTH DEMONSTRATOR ARRAY

International Nuclear Information System (INIS)

Lazio, T. Joseph W.; Clarke, Tracy E.; Lane, W. M.; Gross, C.; Kassim, N. E.; Hicks, B.; Polisensky, E.; Stewart, K.; Ray, P. S.; Wood, D.; York, J. A.; Kerkhoff, A.; Dalal, N. Paravastu; Cohen, A. S.; Erickson, W. C.

2010-01-01

This paper presents a search for radio transients at a frequency of 73.8 MHz (4 m wavelength) using the all-sky imaging capabilities of the Long Wavelength Demonstrator Array (LWDA). The LWDA was a 16-dipole phased array telescope, located on the site of the Very Large Array in New Mexico. The field of view of the individual dipoles was essentially the entire sky, and the number of dipoles was sufficiently small that a simple software correlator could be used to make all-sky images. From 2006 October to 2007 February, we conducted an all-sky transient search program, acquiring a total of 106 hr of data; the time sampling varied, being 5 minutes at the start of the program and improving to 2 minutes by the end of the program. We were able to detect solar flares, and in a special-purpose mode, radio reflections from ionized meteor trails during the 2006 Leonid meteor shower. We detected no transients originating outside of the solar system above a flux density limit of 500 Jy, equivalent to a limit of no more than about 10 -2 events yr -1 deg -2 , having a pulse energy density ∼>1.5 x 10 -20 J m -2 Hz -1 at 73.8 MHz for pulse widths of about 300 s. This event rate is comparable to that determined from previous all-sky transient searches, but at a lower frequency than most previous all-sky searches. We believe that the LWDA illustrates how an all-sky imaging mode could be a useful operational model for low-frequency instruments such as the Low Frequency Array, the Long Wavelength Array station, the low-frequency component of the Square Kilometre Array, and potentially the Lunar Radio Array.

Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals

Directory of Open Access Journals (Sweden)

Reneker Jeff

2005-05-01

Full Text Available Abstract Background Searching for small tandem/disperse repetitive DNA sequences streamlines many biomedical research processes. For instance, whole genomic array analysis in yeast has revealed 22 PHO-regulated genes. The promoter regions of all but one of them contain at least one of the two core Pho4p binding sites, CACGTG and CACGTT. In humans, microsatellites play a role in a number of rare neurodegenerative diseases such as spinocerebellar ataxia type 1 (SCA1. SCA1 is a hereditary neurodegenerative disease caused by an expanded CAG repeat in the coding sequence of the gene. In bacterial pathogens, microsatellites are proposed to regulate expression of some virulence factors. For example, bacteria commonly generate intra-strain diversity through phase variation which is strongly associated with virulence determinants. A recent analysis of the complete sequences of the Helicobacter pylori strains 26695 and J99 has identified 46 putative phase-variable genes among the two genomes through their association with homopolymeric tracts and dinucleotide repeats. Life scientists are increasingly interested in studying the function of small sequences of DNA. However, current search algorithms often generate thousands of matches – most of which are irrelevant to the researcher. Results We present our hash function as well as our search algorithm to locate small sequences of DNA within multiple genomes. Our system applies information retrieval algorithms to discover knowledge of cross-species conservation of repeat sequences. We discuss our incorporation of the Gene Ontology (GO database into these algorithms. We conduct an exhaustive time analysis of our system for various repetitive sequence lengths. For instance, a search for eight bases of sequence within 3.224 GBases on 49 different chromosomes takes 1.147 seconds on average. To illustrate the relevance of the search results, we conduct a search with and without added annotation terms for the

The Role of Search Speed in the Contextual Cueing of Children's Attention.

Science.gov (United States)

Darby, Kevin; Burling, Joseph; Yoshida, Hanako

2014-01-01

The contextual cueing effect is a robust phenomenon in which repeated exposure to the same arrangement of random elements guides attention to relevant information by constraining search. The effect is measured using an object search task in which a target (e.g., the letter T) is located within repeated or nonrepeated visual contexts (e.g., configurations of the letter L). Decreasing response times for the repeated configurations indicates that contextual information has facilitated search. Although the effect is robust among adult participants, recent attempts to document the effect in children have yielded mixed results. We examined the effect of search speed on contextual cueing with school-aged children, comparing three types of stimuli that promote different search times in order to observe how speed modulates this effect. Reliable effects of search time were found, suggesting that visual search speed uniquely constrains the role of attention toward contextually cued information.

8987Array-Chromosome - RMOS | LSDB Archive [Life Science Database Archive metadata

Lifescience Database Archive (English)

Full Text Available List Contact us RMOS 8987Array-Chromosome Data detail Data name 8987Array-Chromosome DOI 10.18908/lsdba.nbdc...00194-008 Description of data contents Position information of the clone of Rice8987 Array (f_array) on chromoso...mes Data file File name: rmos_8987array_chromosome.csv.zip File URL: ftp://ftp.biosciencedbc.jp/archive/...rmos/LATEST/rmos_8987array_chromosome.csv.zip File size: 96.5 KB Simple search UR...L http://togodb.biosciencedbc.jp/togodb/view/rmos_8987array_chromosome#en Data acquisition method - Data ana

Contextual cueing of pop-out visual search: when context guides the deployment of attention.

Science.gov (United States)

Geyer, Thomas; Zehetleitner, Michael; Müller, Hermann J

2010-05-01

Visual context information can guide attention in demanding (i.e., inefficient) search tasks. When participants are repeatedly presented with identically arranged ('repeated') displays, reaction times are faster relative to newly composed ('non-repeated') displays. The present article examines whether this 'contextual cueing' effect operates also in simple (i.e., efficient) search tasks and if so, whether there it influences target, rather than response, selection. The results were that singleton-feature targets were detected faster when the search items were presented in repeated, rather than non-repeated, arrangements. Importantly, repeated, relative to novel, displays also led to an increase in signal detection accuracy. Thus, contextual cueing can expedite the selection of pop-out targets, most likely by enhancing feature contrast signals at the overall-salience computation stage.

New applications using phased array techniques

International Nuclear Information System (INIS)

Erhard, A.; Schenk, G.; Hauser, Th.; Voelz, U.

2001-01-01

In general, the application of phased array techniques used to be limited to heavy components with large wall thicknesses, such as those in the nuclear power industry. With the improvement of the phased array equipment, including phased array search units, other application areas are now accessible for the phased array inspection technique, e.g. the inspection of turbine blade roots, weld inspection with a wall thickness ranging from 12 to 40 mm, inspection of aircraft components, inspection of spot welds and the inspection of concrete building components. The objective for the use of phased array techniques has not significantly changed since their first application, e.g. instant adjustment of the sound beam to the geometry of the test object by steering incidence angle, skew angle and/or sound field focusing. Because some new phased array technique applications are still in the experimental (laboratory) stage, this article will focus on some examples for practical, real-weld applications

Memory under pressure: secondary-task effects on contextual cueing of visual search.

Science.gov (United States)

Annac, Efsun; Manginelli, Angela A; Pollmann, Stefan; Shi, Zhuanghua; Müller, Hermann J; Geyer, Thomas

2013-11-04

Repeated display configurations improve visual search. Recently, the question has arisen whether this contextual cueing effect (Chun & Jiang, 1998) is itself mediated by attention, both in terms of selectivity and processing resources deployed. While it is accepted that selective attention modulates contextual cueing (Jiang & Leung, 2005), there is an ongoing debate whether the cueing effect is affected by a secondary working memory (WM) task, specifically at which stage WM influences the cueing effect: the acquisition of configural associations (e.g., Travis, Mattingley, & Dux, 2013) versus the expression of learned associations (e.g., Manginelli, Langer, Klose, & Pollmann, 2013). The present study re-investigated this issue. Observers performed a visual search in combination with a spatial WM task. The latter was applied on either early or late search trials--so as to examine whether WM load hampers the acquisition of or retrieval from contextual memory. Additionally, the WM and search tasks were performed either temporally in parallel or in succession--so as to permit the effects of spatial WM load to be dissociated from those of executive load. The secondary WM task was found to affect cueing in late, but not early, experimental trials--though only when the search and WM tasks were performed in parallel. This pattern suggests that contextual cueing involves a spatial WM resource, with spatial WM providing a workspace linking the current search array with configural long-term memory; as a result, occupying this workspace by a secondary WM task hampers the expression of learned configural associations.

The Role of Search Speed in the Contextual Cueing of Children’s Attention

Science.gov (United States)

Darby, Kevin; Burling, Joseph; Yoshida, Hanako

2013-01-01

The contextual cueing effect is a robust phenomenon in which repeated exposure to the same arrangement of random elements guides attention to relevant information by constraining search. The effect is measured using an object search task in which a target (e.g., the letter T) is located within repeated or nonrepeated visual contexts (e.g., configurations of the letter L). Decreasing response times for the repeated configurations indicates that contextual information has facilitated search. Although the effect is robust among adult participants, recent attempts to document the effect in children have yielded mixed results. We examined the effect of search speed on contextual cueing with school-aged children, comparing three types of stimuli that promote different search times in order to observe how speed modulates this effect. Reliable effects of search time were found, suggesting that visual search speed uniquely constrains the role of attention toward contextually cued information. PMID:24505167

Limitations of tissue micro array in Duke's B colon cancer

DEFF Research Database (Denmark)

Kjær-Frifeldt, Sanne; Lindebjerg, Jan; Brunner, Nils

2012-01-01

Tissue micro array (TMA) is widely used in cancer research in search of new predictive and prognostic markers. Colon cancer is known to be heterogeneous and the present study addresses some methodological aspects using cores of different size and analysing markers with different cellular distribu......Tissue micro array (TMA) is widely used in cancer research in search of new predictive and prognostic markers. Colon cancer is known to be heterogeneous and the present study addresses some methodological aspects using cores of different size and analysing markers with different cellular...

A muon array to complement the Fly's Eye

International Nuclear Information System (INIS)

Matthews, J.

1987-01-01

A buried muon counting array which will operate in coincidence with proposed and existing surface scintillators at the Fly's Eye experiment is described. The combined arrays will search for point sources of γ rays by selecting muon-poor showers. If recent reports are correct, a signal-to-background ratio of 33 will be possible before making use of phase information

RoboSCell: An automated single cell arraying and analysis instrument

KAUST Repository

Sakaki, Kelly

2009-09-09

Single cell research has the potential to revolutionize experimental methods in biomedical sciences and contribute to clinical practices. Recent studies suggest analysis of single cells reveals novel features of intracellular processes, cell-to-cell interactions and cell structure. The methods of single cell analysis require mechanical resolution and accuracy that is not possible using conventional techniques. Robotic instruments and novel microdevices can achieve higher throughput and repeatability; however, the development of such instrumentation is a formidable task. A void exists in the state-of-the-art for automated analysis of single cells. With the increase in interest in single cell analyses in stem cell and cancer research the ability to facilitate higher throughput and repeatable procedures is necessary. In this paper, a high-throughput, single cell microarray-based robotic instrument, called the RoboSCell, is described. The proposed instrument employs a partially transparent single cell microarray (SCM) integrated with a robotic biomanipulator for in vitro analyses of live single cells trapped at the array sites. Cells, labeled with immunomagnetic particles, are captured at the array sites by channeling magnetic fields through encapsulated permalloy channels in the SCM. The RoboSCell is capable of systematically scanning the captured cells temporarily immobilized at the array sites and using optical methods to repeatedly measure extracellular and intracellular characteristics over time. The instrument\\'s capabilities are demonstrated by arraying human T lymphocytes and measuring the uptake dynamics of calcein acetoxymethylester-all in a fully automated fashion. © 2009 Springer Science+Business Media, LLC.

Adaptive Large Neighbourhood Search

DEFF Research Database (Denmark)

Røpke, Stefan

Large neighborhood search is a metaheuristic that has gained popularity in recent years. The heuristic repeatedly moves from solution to solution by first partially destroying the solution and then repairing it. The best solution observed during this search is presented as the final solution....... This tutorial introduces the large neighborhood search metaheuristic and the variant adaptive large neighborhood search that dynamically tunes parameters of the heuristic while it is running. Both heuristics belong to a broader class of heuristics that are searching a solution space using very large...... neighborhoods. The tutorial also present applications of the adaptive large neighborhood search, mostly related to vehicle routing problems for which the heuristic has been extremely successful. We discuss how the heuristic can be parallelized and thereby take advantage of modern desktop computers...

Contextual cueing impairment in patients with age-related macular degeneration.

Science.gov (United States)

Geringswald, Franziska; Herbik, Anne; Hoffmann, Michael B; Pollmann, Stefan

2013-09-12

Visual attention can be guided by past experience of regularities in our visual environment. In the contextual cueing paradigm, incidental learning of repeated distractor configurations speeds up search times compared to random search arrays. Concomitantly, fewer fixations and more direct scan paths indicate more efficient visual exploration in repeated search arrays. In previous work, we found that simulating a central scotoma in healthy observers eliminated this search facilitation. Here, we investigated contextual cueing in patients with age-related macular degeneration (AMD) who suffer from impaired foveal vision. AMD patients performed visual search using only their more severely impaired eye (n = 13) as well as under binocular viewing (n = 16). Normal-sighted controls developed a significant contextual cueing effect. In comparison, patients showed only a small nonsignificant advantage for repeated displays when searching with their worse eye. When searching binocularly, they profited from contextual cues, but still less than controls. Number of fixations and scan pattern ratios showed a comparable pattern as search times. Moreover, contextual cueing was significantly correlated with acuity in monocular search. Thus, foveal vision loss may lead to impaired guidance of attention by contextual memory cues.

Sparse Array Angle Estimation Using Reduced-Dimension ESPRIT-MUSIC in MIMO Radar

Directory of Open Access Journals (Sweden)

Chaozhu Zhang

2013-01-01

Full Text Available Sparse linear arrays provide better performance than the filled linear arrays in terms of angle estimation and resolution with reduced size and low cost. However, they are subject to manifold ambiguity. In this paper, both the transmit array and receive array are sparse linear arrays in the bistatic MIMO radar. Firstly, we present an ESPRIT-MUSIC method in which ESPRIT algorithm is used to obtain ambiguous angle estimates. The disambiguation algorithm uses MUSIC-based procedure to identify the true direction cosine estimate from a set of ambiguous candidate estimates. The paired transmit angle and receive angle can be estimated and the manifold ambiguity can be solved. However, the proposed algorithm has high computational complexity due to the requirement of two-dimension search. Further, the Reduced-Dimension ESPRIT-MUSIC (RD-ESPRIT-MUSIC is proposed to reduce the complexity of the algorithm. And the RD-ESPRIT-MUSIC only demands one-dimension search. Simulation results demonstrate the effectiveness of the method.

Sparse array angle estimation using reduced-dimension ESPRIT-MUSIC in MIMO radar.

Science.gov (United States)

Zhang, Chaozhu; Pang, Yucai

2013-01-01

Sparse linear arrays provide better performance than the filled linear arrays in terms of angle estimation and resolution with reduced size and low cost. However, they are subject to manifold ambiguity. In this paper, both the transmit array and receive array are sparse linear arrays in the bistatic MIMO radar. Firstly, we present an ESPRIT-MUSIC method in which ESPRIT algorithm is used to obtain ambiguous angle estimates. The disambiguation algorithm uses MUSIC-based procedure to identify the true direction cosine estimate from a set of ambiguous candidate estimates. The paired transmit angle and receive angle can be estimated and the manifold ambiguity can be solved. However, the proposed algorithm has high computational complexity due to the requirement of two-dimension search. Further, the Reduced-Dimension ESPRIT-MUSIC (RD-ESPRIT-MUSIC) is proposed to reduce the complexity of the algorithm. And the RD-ESPRIT-MUSIC only demands one-dimension search. Simulation results demonstrate the effectiveness of the method.

In silico reversal of repeat-induced point mutation (RIP identifies the origins of repeat families and uncovers obscured duplicated genes

Directory of Open Access Journals (Sweden)

Hane James K

2010-11-01

Full Text Available Abstract Background Repeat-induced point mutation (RIP is a fungal genome defence mechanism guarding against transposon invasion. RIP mutates the sequence of repeated DNA and over time renders the affected regions unrecognisable by similarity search tools such as BLAST. Results DeRIP is a new software tool developed to predict the original sequence of a RIP-mutated region prior to the occurrence of RIP. In this study, we apply deRIP to the genome of the wheat pathogen Stagonospora nodorum SN15 and predict the origin of several previously uncharacterised classes of repetitive DNA. Conclusions Five new classes of transposon repeats and four classes of endogenous gene repeats were identified after deRIP. The deRIP process is a new tool for fungal genomics that facilitates the identification and understanding of the role and origin of fungal repetitive DNA. DeRIP is open-source and is available as part of the RIPCAL suite at http://www.sourceforge.net/projects/ripcal.

CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci

DEFF Research Database (Denmark)

Alkhnbashi, Omer S.; Costa, Fabrizio; Shah, Shiraz Ali

2014-01-01

Motivation: The discovery of CRISPR-Cas systems almost 20 years ago rapidly changed our perception of the bacterial and archaeal immune systems. CRISPR loci consist of several repetitive DNA sequences called repeats, inter-spaced by stretches of variable length sequences called spacers. This CRISPR...... array is transcribed and processed into multiple mature RNA species (crRNAs). A single crRNA is integrated into an interference complex, together with CRISPR-associated (Cas) proteins, to bind and degrade invading nucleic acids. Although existing bioinformatics tools can recognize CRISPR loci...... by their characteristic repeat-spacer architecture, they generally output CRISPR arrays of ambiguous orientation and thus do not determine the strand from which crRNAs are processed. Knowledge of the correct orientation is crucial for many tasks, including the classification of CRISPR conservation, the detection...

Governing conditions of repeatable Barkhausen noise response

International Nuclear Information System (INIS)

Stupakov, O.; Pal'a, J.; Takagi, T.; Uchimoto, T.

2009-01-01

The paper is devoted to the establishment of experimental conditions, which ensure the repeatability of magnetic Barkhausen noise testing in practice. For this task, the measurements were performed on open flat samples using different experimental configurations, including: different magnetization frequencies, sampling rates, and filter cut-off frequencies; using a sample-wrapped coil and using attached pick-up coils of various dimensions, with different lift-offs of a single yoke magnet and of the attached coil. The sample magnetization was controlled by a vertical array of three Hall sensors; their readings were extrapolated to the sample surface to precisely define its field. After analysis of the results, a scheme for an optimized sensor with a controlled field waveform was suggested to improve the measurement repeatability. The important issues of signal processing and parameter applicability were also discussed in detail.

Modeling guidance and recognition in categorical search: bridging human and computer object detection.

Science.gov (United States)

Zelinsky, Gregory J; Peng, Yifan; Berg, Alexander C; Samaras, Dimitris

2013-10-08

Search is commonly described as a repeating cycle of guidance to target-like objects, followed by the recognition of these objects as targets or distractors. Are these indeed separate processes using different visual features? We addressed this question by comparing observer behavior to that of support vector machine (SVM) models trained on guidance and recognition tasks. Observers searched for a categorically defined teddy bear target in four-object arrays. Target-absent trials consisted of random category distractors rated in their visual similarity to teddy bears. Guidance, quantified as first-fixated objects during search, was strongest for targets, followed by target-similar, medium-similarity, and target-dissimilar distractors. False positive errors to first-fixated distractors also decreased with increasing dissimilarity to the target category. To model guidance, nine teddy bear detectors, using features ranging in biological plausibility, were trained on unblurred bears then tested on blurred versions of the same objects appearing in each search display. Guidance estimates were based on target probabilities obtained from these detectors. To model recognition, nine bear/nonbear classifiers, trained and tested on unblurred objects, were used to classify the object that would be fixated first (based on the detector estimates) as a teddy bear or a distractor. Patterns of categorical guidance and recognition accuracy were modeled almost perfectly by an HMAX model in combination with a color histogram feature. We conclude that guidance and recognition in the context of search are not separate processes mediated by different features, and that what the literature knows as guidance is really recognition performed on blurred objects viewed in the visual periphery.

UHE Cosmic Ray Observations Using the Cygnus Water - Array

Science.gov (United States)

Dion, Cynthia L.

1995-01-01

The CYGNUS water-Cerenkov array, consisting of five surface water-Cerenkov detectors, was built in the CYGNUS extensive air shower array at Los Alamos, New Mexico (latitude 36^circ N, longitude 107^circ W, altitude 2310 meters) to search for point sources of ultra-high energy particles (>1014 eV per particle) with the CYGNUS extensive air shower array. The water-Cerenkov detectors are used to improve the angular resolution of the extensive air shower array. This experiment searches for point sources of UHE gamma-radiation that may be of galactic or extra-galactic origin. The data set from December 1991 to January 1994 consists of data from both the water-Cerenkov array and the CYGNUS extensive air shower array. These data are combined, and the angular resolution of this combined data set is measured to be 0.34^circ+0.03 ^circ-0.04^circ. The measurement is made by observing the cosmic-ray shadowing of the Sun and the Moon. Using a subset of these data, three potential sources of UHE emission are studied: the Crab Pulsar, and the active galactic nuclei Markarian 421 and Markarian 501. A search is conducted for continuous emission from these three sources, and emission over shorter time scales. This experiment is particularly sensitive to emission over these shorter time scales. There is no evidence of UHE emission from these three sources over any time scales studied, and upper bounds to the flux of gamma radiation are determined. The flux upper limit for continuous emission from the Crab Pulsar is found to be 1.2times10^ {-13}/rm cm^2/s above 70 TeV. The flux upper limit for continuous emission from Markarian 421 is found to be 1.3times10^ {-13}/rm cm^2/s above 50 TeV. The flux upper limit for continuous emission from Markarian 501 is found to be 3.8times10^ {-13}/rm cm^2/s above 50 TeV.

Plasmonic Properties of Vertically Aligned Nanowire Arrays

Directory of Open Access Journals (Sweden)

Hua Qi

2012-01-01

Full Text Available Nanowires (NWs/Ag sheath composites were produced to investigate plasmonic coupling between vertically aligned NWs for surface-enhanced Raman scattering (SERS applications. In this investigation, two types of vertical NW arrays were studied; those of ZnO NWs grown on nanosphere lithography patterned sapphire substrate via vapor-liquid-solid (VLS mechanism and Si NW arrays produced by wet chemical etching. Both types of vertical NW arrays were coated with a thin layer of silver by electroless silver plating for SERS enhancement studies. The experimental results show extremely strong SERS signals due to plasmonic coupling between the NWs, which was verified by COMSOL electric field simulations. We also compared the SERS enhancement intensity of aligned and random ZnO NWs, indicating that the aligned NWs show much stronger and repeatable SERS signal than those grown in nonaligned geometries.

Slow Earthquakes in the Alaska-Aleutian Subduction Zone Detected by Multiple Mini Seismic Arrays

Science.gov (United States)

LI, B.; Ghosh, A.; Thurber, C. H.; Lanza, F.

2017-12-01

The Alaska-Aleutian subduction zone is one of the most seismically and volcanically active plate boundaries on earth. Compared to other subduction zones, the slow earthquakes, such as tectonic tremors (TTs) and low frequency earthquakes (LFEs), are relatively poorly studied due to the limited data availability and difficult logistics. The analysis of two-months of continuous data from a mini array deployed in 2012 shows abundant tremor and LFE activities under Unalaska Island that is heterogeneously distributed [Li & Ghosh, 2017]. To better study slow earthquakes and understand their physical characteristics in the study region, we deployed a hybrid array of arrays, consisting of three well-designed mini seismic arrays and five stand alone stations, in the Unalaska Island in 2014. They were operational for between one and two years. Using the beam back-projection method [Ghosh et al., 2009, 2012], we detect continuous tremor activities for over a year when all three arrays are running. The sources of tremors are located south of the Unalaska and Akutan Islands, at the eastern and down-dip edge of the rupture zone of the 1957 Mw 8.6 earthquake, and they are clustered in several patches, with a gap between the two major clusters. Tremors show multiple migration patterns with propagation in both along-strike and dip directions and a wide range of velocities. We also identify tens of LFE families and use them as templates to search for repeating LFE events with the matched-filter method. Hundreds to thousands of LFEs for each family are detected and their activities are spatiotemporally consistent with tremor activities. The array techniques are revealing a near-continuous tremor activity in this area with remarkable spatiotemporal details. It helps us to better recognize the physical properties of the transition zone, provides new insights into the slow earthquake activities in this area, and explores their relation with the local earthquakes and the potential slow

Spatial partitions systematize visual search and enhance target memory.

Science.gov (United States)

Solman, Grayden J F; Kingstone, Alan

2017-02-01

Humans are remarkably capable of finding desired objects in the world, despite the scale and complexity of naturalistic environments. Broadly, this ability is supported by an interplay between exploratory search and guidance from episodic memory for previously observed target locations. Here we examined how the environment itself may influence this interplay. In particular, we examined how partitions in the environment-like buildings, rooms, and furniture-can impact memory during repeated search. We report that the presence of partitions in a display, independent of item configuration, reliably improves episodic memory for item locations. Repeated search through partitioned displays was faster overall and was characterized by more rapid ballistic orienting in later repetitions. Explicit recall was also both faster and more accurate when displays were partitioned. Finally, we found that search paths were more regular and systematic when displays were partitioned. Given the ubiquity of partitions in real-world environments, these results provide important insights into the mechanisms of naturalistic search and its relation to memory.

Development of a versatile intra-articular pressure sensing array.

Science.gov (United States)

Welcher, J B; Popovich, J M; Hedman, T P

2011-10-01

A new sensor array intended to accurately and directly measure spatial and time-dependent pressures within a highly curved biological intra-articular joint was developed and tested. To evaluate performance of the new sensor array for application within intra-articular joints generally, and specifically to fit within the relatively restrictive space of the lumbar spine facet joint, geometric constraints of length, width, thickness and sensor spatial resolution were evaluated. Additionally, the effects of sensor array curvature, frequency response, linearity, drift, hysteresis, repeatability, and total system cost were assessed. The new sensor array was approximately 0.6mm in thickness, scalable to below the nominal 12 mm wide by 15 high lumbar spine facet joint size, offered no inherent limitations on the number or spacing of the sensors with less than 1.7% cross talk with sensor immediately adjacent to one another. No difference was observed in sensor performance down to a radius of curvature of 7 mm and a 0.66±0.97% change in sensor sensitivity was observed at a radius of 5.5mm. The sensor array had less than 0.07 dB signal loss up to 5.5 Hz, linearity was 0.58±0.13% full scale (FS), drift was less than 0.2% FS at 250 s and less than 0.6% FS at 700 s, hysteresis was 0.78±0.18%. Repeatability was excellent with a coefficient of variation less than 2% at pressures between 0 and 1.000 MPa. Total system cost was relatively small as standard commercially available data acquisition systems could be utilized, with no specialized software, and individual sensors within an array can be replaced as needed. The new sensor array had small and scalable geometry and very acceptable intrinsic performance including minimal to no alteration in performance at physiologically relevant ranges of joint curvature. Copyright © 2011 IPEM. Published by Elsevier Ltd. All rights reserved.

Prior knowledge of category size impacts visual search.

Science.gov (United States)

Wu, Rachel; McGee, Brianna; Echiverri, Chelsea; Zinszer, Benjamin D

2018-03-30

Prior research has shown that category search can be similar to one-item search (as measured by the N2pc ERP marker of attentional selection) for highly familiar, smaller categories (e.g., letters and numbers) because the finite set of items in a category can be grouped into one unit to guide search. Other studies have shown that larger, more broadly defined categories (e.g., healthy food) also can elicit N2pc components during category search, but the amplitude of these components is typically attenuated. Two experiments investigated whether the perceived size of a familiar category impacts category and exemplar search. We presented participants with 16 familiar company logos: 8 from a smaller category (social media companies) and 8 from a larger category (entertainment/recreation manufacturing companies). The ERP results from Experiment 1 revealed that, in a two-item search array, search was more efficient for the smaller category of logos compared to the larger category. In a four-item search array (Experiment 2), where two of the four items were placeholders, search was largely similar between the category types, but there was more attentional capture by nontarget members from the same category as the target for smaller rather than larger categories. These results support a growing literature on how prior knowledge of categories affects attentional selection and capture during visual search. We discuss the implications of these findings in relation to assessing cognitive abilities across the lifespan, given that prior knowledge typically increases with age. © 2018 Society for Psychophysiological Research.

Attention has memory: priming for the size of the attentional focus.

Science.gov (United States)

Fuggetta, Giorgio; Lanfranchi, Silvia; Campana, Gianluca

2009-01-01

Repeating the same target's features or spatial position, as well as repeating the same context (e.g. distractor sets) in visual search leads to a decrease of reaction times. This modulation can occur on a trial by trial basis (the previous trial primes the following one), but can also occur across multiple trials (i.e. performance in the current trial can benefit from features, position or context seen several trials earlier), and includes inhibition of different features, position or contexts besides facilitation of the same ones. Here we asked whether a similar implicit memory mechanism exists for the size of the attentional focus. By manipulating the size of the attentional focus with the repetition of search arrays with the same vs. different size, we found both facilitation for the same array size and inhibition for a different array size, as well as a progressive improvement in performance with increasing the number of repetition of search arrays with the same size. These results show that implicit memory for the size of the attentional focus can guide visual search even in the absence of feature or position priming, or distractor's contextual effects.

Repeat-containing protein effectors of plant-associated organisms

Directory of Open Access Journals (Sweden)

Carl H. Mesarich

2015-10-01

Full Text Available Many plant-associated organisms, including microbes, nematodes, and insects, deliver effector proteins into the apoplast, vascular tissue, or cell cytoplasm of their prospective hosts. These effectors function to promote colonization, typically by altering host physiology or by modulating host immune responses. The same effectors however, can also trigger host immunity in the presence of cognate host immune receptor proteins, and thus prevent colonization. To circumvent effector-triggered immunity, or to further enhance host colonization, plant-associated organisms often rely on adaptive effector evolution. In recent years, it has become increasingly apparent that several effectors of plant-associated organisms are repeat-containing proteins (RCPs that carry tandem or non-tandem arrays of an amino acid sequence or structural motif. In this review, we highlight the diverse roles that these repeat domains play in RCP effector function. We also draw attention to the potential role of these repeat domains in adaptive evolution with regards to RCP effector function and the evasion of effector-triggered immunity. The aim of this review is to increase the profile of RCP effectors from plant-associated organisms.

The polymorphic integumentary mucin B.1 from Xenopus laevis contains the short consensus repeat.

Science.gov (United States)

Probst, J C; Hauser, F; Joba, W; Hoffmann, W

1992-03-25

The frog integumentary mucin B.1 (FIM-B.1), discovered by molecular cloning, contains a cysteine-rich C-terminal domain which is homologous with von Willebrand factor. With the help of the polymerase chain reaction, we now characterize a contiguous region 5' to the von Willebrand factor domain containing the short consensus repeat typical of many proteins from the complement system. Multiple transcripts have been cloned, which originate from a single animal and differ by a variable number of tandem repeats (rep-33 sequences). These different transcripts probably originate solely from two genes and are generated presumably by alternative splicing of an huge array of functional cassettes. This model is supported by analysis of genomic FIM-B.1 sequences from Xenopus laevis. Here, rep-33 sequences are arranged in an interrupted array of individual units. Additionally, results of Southern analysis revealed genetic polymorphism between different animals which is predicted to be within the tandem repeats. A first investigation of the predicted mucins with the help of a specific antibody against a synthetic peptide determined the molecular mass of FIM-B.1 to greater than 200 kDa. Here again, genetic polymorphism between different animals is detected.

Solving “Antenna Array Thinning Problem” Using Genetic Algorithm

Directory of Open Access Journals (Sweden)

Rajashree Jain

2012-01-01

Full Text Available Thinning involves reducing total number of active elements in an antenna array without causing major degradation in system performance. Dynamic thinning is the process of achieving this under real-time conditions. It is required to find a strategic subset of antenna elements for thinning so as to have its optimum performance. From a mathematical perspective this is a nonlinear, multidimensional problem with multiple objectives and many constraints. Solution for such problem cannot be obtained by classical analytical techniques. It will be required to employ some type of search algorithm which can lead to a practical solution in an optimal. The present paper discusses an approach of using genetic algorithm for array thinning. After discussing the basic concept involving antenna array, array thinning, dynamic thinning, and application methodology, simulation results of applying the technique to linear and planar arrays are presented.

ATXN2 trinucleotide repeat length correlates with risk of ALS.

Science.gov (United States)

Sproviero, William; Shatunov, Aleksey; Stahl, Daniel; Shoai, Maryam; van Rheenen, Wouter; Jones, Ashley R; Al-Sarraj, Safa; Andersen, Peter M; Bonini, Nancy M; Conforti, Francesca L; Van Damme, Philip; Daoud, Hussein; Del Mar Amador, Maria; Fogh, Isabella; Forzan, Monica; Gaastra, Ben; Gellera, Cinzia; Gitler, Aaron D; Hardy, John; Fratta, Pietro; La Bella, Vincenzo; Le Ber, Isabelle; Van Langenhove, Tim; Lattante, Serena; Lee, Yi-Chung; Malaspina, Andrea; Meininger, Vincent; Millecamps, Stéphanie; Orrell, Richard; Rademakers, Rosa; Robberecht, Wim; Rouleau, Guy; Ross, Owen A; Salachas, Francois; Sidle, Katie; Smith, Bradley N; Soong, Bing-Wen; Sorarù, Gianni; Stevanin, Giovanni; Kabashi, Edor; Troakes, Claire; van Broeckhoven, Christine; Veldink, Jan H; van den Berg, Leonard H; Shaw, Christopher E; Powell, John F; Al-Chalabi, Ammar

2017-03-01

We investigated a CAG trinucleotide repeat expansion in the ATXN2 gene in amyotrophic lateral sclerosis (ALS). Two new case-control studies, a British dataset of 1474 ALS cases and 567 controls, and a Dutch dataset of 1328 ALS cases and 691 controls were analyzed. In addition, to increase power, we systematically searched PubMed for case-control studies published after 1 August 2010 that investigated the association between ATXN2 intermediate repeats and ALS. We conducted a meta-analysis of the new and existing studies for the relative risks of ATXN2 intermediate repeat alleles of between 24 and 34 CAG trinucleotide repeats and ALS. There was an overall increased risk of ALS for those carrying intermediate sized trinucleotide repeat alleles (odds ratio 3.06 [95% confidence interval 2.37-3.94]; p = 6 × 10 -18 ), with an exponential relationship between repeat length and ALS risk for alleles of 29-32 repeats (R 2  = 0.91, p = 0.0002). No relationship was seen for repeat length and age of onset or survival. In contrast to trinucleotide repeat diseases, intermediate ATXN2 trinucleotide repeat expansion in ALS does not predict age of onset but does predict disease risk. Copyright © 2016 The Author(s). Published by Elsevier Inc. All rights reserved.

Repeating a searched-for word with an agreement token in "challenged interaction"

DEFF Research Database (Denmark)

Kristiansen, Elisabeth Dalby; Marstrand, Ann Katrine; El Derbas, Jalal

2017-01-01

the repeat, that seems to defer to others’ claims of epistemic authority and competence. The article contributes to conversation analytic studies of atypical interaction and deviance by describing how speakers in “challenged interaction” deal with competence as a practical problem. Data is in English, Arabic...

The Interplay of Episodic and Semantic Memory in Guiding Repeated Search in Scenes

Science.gov (United States)

Vo, Melissa L.-H.; Wolfe, Jeremy M.

2013-01-01

It seems intuitive to think that previous exposure or interaction with an environment should make it easier to search through it and, no doubt, this is true in many real-world situations. However, in a recent study, we demonstrated that previous exposure to a scene does not necessarily speed search within that scene. For instance, when observers…

On the Synthesis of Sub-arrayed Planar Array Antennas for Tracking Radar Applications

OpenAIRE

Manica, Luca; Rocca, Paolo; Massa, Andrea

2011-01-01

The synthesis of compromise sum and difference patterns of large planar arrays is addressed in this letter by means of a suitable implementation of the Contiguous Partition Method (CPM). By exploiting some properties of the solution space, the generation of compromise sum-difference patterns is recast as the searching of the optimal path in a graph that codes the admissible solution space. Some numerical experiments are provided in order to assess the effectiveness of the proposed method. (c)...

Two tandemly repeated telomere-associated sequences in Nicotiana plumbaginifolia.

Science.gov (United States)

Chen, C M; Wang, C T; Wang, C J; Ho, C H; Kao, Y Y; Chen, C C

1997-12-01

Two tandemly repeated telomere-associated sequences, NP3R and NP4R, have been isolated from Nicotiana plumbaginifolia. The length of a repeating unit for NP3R and NP4R is 165 and 180 nucleotides respectively. The abundance of NP3R, NP4R and telomeric repeats is, respectively, 8.4 x 10(4), 6 x 10(3) and 1.5 x 10(6) copies per haploid genome of N. plumbaginifolia. Fluorescence in situ hybridization revealed that NP3R is located at the ends and/or in interstitial regions of all 10 chromosomes and NP4R on the terminal regions of three chromosomes in the haploid genome of N. plumbaginifolia. Sequence homology search revealed that not only are NP3R and NP4R homologous to HRS60 and GRS, respectively, two tandem repeats isolated from N. tabacum, but that NP3R and NP4R are also related to each other, suggesting that they originated from a common ancestral sequence. The role of these repeated sequences in chromosome healing is discussed based on the observation that two to three copies of a telomere-similar sequence were present in each repeating unit of NP3R and NP4R.

Antenna concepts for interstellar search systems

International Nuclear Information System (INIS)

Basler, R.P.; Johnson, G.L.; Vondrak, R.R.

1977-01-01

An evaluation is made of microwave receiving systems designed to search for signals from extraterrestrial intelligence. Specific design concepts are analyzed parametrically to determine whether the optimum antenna system location is on earth, in space, or on the moon. Parameters considered include the hypothesized number of transmitting civilizations, the number of stars that must be searched to give any desired probability of receiving a signal, the antenna collecting area, the search time, the search range, and the cost. This analysis suggests that search systems based on the moon are not cost-competitive, if the search is extended only a few hundred light years from the earth, a Cyclops-type array on earth may be the most cost-effective system, for a search extending to 500 light years or more, a substantial cost and search-time advantage can be achieved with a large spherical reflector in space with multiple feeds, radio frequency interference shields can be provided for space systems, and cost can range from a few hundred million to tens of billions of dollars, depending on the parameter values assumed

Concerted evolution of the tandemly repeated genes encoding primate U2 small nuclear RNA (the RNU2 locus) does not prevent rapid diversification of the (CT){sub n} {center_dot} (GA){sub n} microsatellite embedded within the U2 repeat unit

Energy Technology Data Exchange (ETDEWEB)

Liao, D.; Weiner, A.M. [Yale Univ., New Haven, CT (United States)

1995-12-10

The RNU2 locus encoding human U2 small nuclear RNA (snRNA) is organized as a nearly perfect tandem array containing 5 to 22 copies of a 5.8-kb repeat unit. Just downstream of the U2 snRNA gene in each 5.8-kb repeat unit lies a large (CT){sub n}{center_dot}(GA){sub n} dinucleotide repeat (n {approx} 70). This form of genomic organization, in which one repeat is embedded within another, provides an unusual opportunity to study the balance of forces maintaining the homogeneity of both kinds of repeats. Using a combination of field inversion gel electrophoresis and polymerase chain reaction, we have been able to study the CT microsatellites within individual U2 tandem arrays. We find that the CT microsatellites within an RNU2 allele exhibit significant length polymorphism, despite the remarkable homogeneity of the surrounding U2 repeat units. Length polymorphism is due primarily to loss or gain of CT dinucleotide repeats, but other types of deletions, insertions, and substitutions are also frequent. Polymorphism is greatly reduced in regions where pure (CT){sub n} tracts are interrupted by occasional G residues, suggesting that irregularities stabilize both the length and the sequence of the dinucleotide repeat. We further show that the RNU2 loci of other catarrhine primates (gorilla, chimpanzee, ogangutan, and baboon) contain orthologous CT microsatellites; these also exhibit length polymorphism, but are highly divergent from each other. Thus, although the CT microsatellite is evolving far more rapidly than the rest of the U2 repeat unit, it has persisted through multiple speciation events spanning >35 Myr. The persistence of the CT microsatellite, despite polymorphism and rapid evolution, suggests that it might play a functional role in concerted evolution of the RNU2 loci, perhaps as an initiation site for recombination and/or gene conversion. 70 refs., 5 figs.

Accuracy of 3 Tesla pelvic phased-array multiparametric MRI in diagnosing prostate cancer at repeat biopsy

Directory of Open Access Journals (Sweden)

Pietro Pepe

2014-12-01

Full Text Available Introduction. Multiparametric pelvic magnetic resonance imaging (mpMRI accuracy in prostate cancer (PCa diagnosis was evaluated. Materials and Methods. From June 2011 to December 2013, 168 patients (median 65 years with negative digital rectal examination underwent repeat transperineal saturation biopsy (SPBx; median 28 cores for persistently high or increasing PSA values, PSA >10 ng/ml or PSA values between 4.1-10 o r 2.6-4 ng/ml with free/total PSA < 25% and < 20%, respectively. All patients underwent mpMRI using a 3.0 Tesla scanner equipped with surface 16 channels phased-array coil and lesions suspicious for PCa were submitted to additional targeted biopsies. Results. A T1c PCa was found in 66 (39% cases; SPBx and mpMRI-suspicious targeted biopsy diagnosed 60 (91% and 52 (78.8% cancers missing 6 (all of the anterior zone and 14 cancers (12 and 2 of the lateral margins and anterior zone, respectively; in detail, mpMRI missed 12 (18.1% PCa charaterized by microfocal (1 positive core with greatest percentage of cancer and Gleason score equal to 5% and 6, respectively disease at risk for insignificant cancer. The diameter of the suspicious mpMRI lesion was directly correlated to the diagnosis of PCa with poor Gleason score (p < 0.05; detection rate of cancer for each suspicious mpMRI core was 35.3%. Diagnostic accuracy, sensitivity, specificity, positive and negative predictive value of mpMRI in diagnosing PCa was 75.7%, 82.5%, 71.8%, 78.9%, 87.9%, respectively. Conclusion. Multiparametric pMRI improved SPBx accuracy in diagnosing significant anterior PCa; the diameter of mpMRI suspicious lesion resulted significantly predictive of aggressive cancers.

Micro-array collimators for X-rays and neutrons

International Nuclear Information System (INIS)

Cimmino, A.; Allman, B.E.; Klein, A.G.; Bastie, P.

1998-08-01

The authors describe the fabrication techniques of novel, compact optical elements for collimating and/or focusing beams of X-rays or thermal neutrons. These optical elements are solid composite arrays consisting of regular stacks of alternating micro-foils, analogous in action to Soller slit collimators, but up to three orders of magnitude smaller. The arrays are made of alternating metals with suitable refractive indices for reflection and/or absorption of the specific radiation. In one implementation, the arrays are made of stacked micro-foils of transmissive elements (Al, Cu) coated and/or electroplated with absorbing elements (Gd, Cd), which are repeatedly rolled or drawn and restacked to achieve the required collimation parameters. The authors present results of these collimators using both X-rays and neutrons. The performance of the collimating element is limited only by the choice of micro-foil materials and the uniformity of their interfaces

A SOUND SOURCE LOCALIZATION TECHNIQUE TO SUPPORT SEARCH AND RESCUE IN LOUD NOISE ENVIRONMENTS

Science.gov (United States)

Yoshinaga, Hiroshi; Mizutani, Koichi; Wakatsuki, Naoto

At some sites of earthquakes and other disasters, rescuers search for people buried under rubble by listening for the sounds which they make. Thus developing a technique to localize sound sources amidst loud noise will support such search and rescue operations. In this paper, we discuss an experiment performed to test an array signal processing technique which searches for unperceivable sound in loud noise environments. Two speakers simultaneously played a noise of a generator and a voice decreased by 20 dB (= 1/100 of power) from the generator noise at an outdoor space where cicadas were making noise. The sound signal was received by a horizontally set linear microphone array 1.05 m in length and consisting of 15 microphones. The direction and the distance of the voice were computed and the sound of the voice was extracted and played back as an audible sound by array signal processing.

Survival Processing Enhances Visual Search Efficiency.

Science.gov (United States)

Cho, Kit W

2018-05-01

Words rated for their survival relevance are remembered better than when rated using other well-known memory mnemonics. This finding, which is known as the survival advantage effect and has been replicated in many studies, suggests that our memory systems are molded by natural selection pressures. In two experiments, the present study used a visual search task to examine whether there is likewise a survival advantage for our visual systems. Participants rated words for their survival relevance or for their pleasantness before locating that object's picture in a search array with 8 or 16 objects. Although there was no difference in search times among the two rating scenarios when set size was 8, survival processing reduced visual search times when set size was 16. These findings reflect a search efficiency effect and suggest that similar to our memory systems, our visual systems are also tuned toward self-preservation.

A Dark Matter Search with MALBEK

Science.gov (United States)

Giovanetti, G. K.; Abgrall, N.; Aguayo, E.; Avignone, F. T.; Barabash, A. S.; Bertrand, F. E.; Boswell, M.; Brudanin, V.; Busch, M.; Byram, D.; Caldwell, A. S.; Chan, Y.-D.; Christofferson, C. D.; Combs, D. C.; Cuesta, C.; Detwiler, J. A.; Doe, P. J.; Efremenko, Yu.; Egorov, V.; Ejiri, H.; Elliott, S. R.; Fast, J. E.; Finnerty, P.; Fraenkle, F. M.; Galindo-Uribarri, A.; Goett, J.; Green, M. P.; Gruszko, J.; Guiseppe, V. E.; Gusev, K.; Hallin, A. L.; Hazama, R.; Hegai, A.; Henning, R.; Hoppe, E. W.; Howard, S.; Howe, M. A.; Keeter, K. J.; Kidd, M. F.; Kochetov, O.; Konovalov, S. I.; Kouzes, R. T.; LaFerriere, B. D.; Leon, J.; Leviner, L. E.; Loach, J. C.; MacMullin, J.; MacMullin, S.; Martin, R. D.; Meijer, S.; Mertens, S.; Nomachi, M.; Orrell, J. L.; O'Shaughnessy, C.; Overman, N. R.; Phillips, D. G.; Poon, A. W. P.; Pushkin, K.; Radford, D. C.; Rager, J.; Rielage, K.; Robertson, R. G. H.; Romero-Romero, E.; Ronquest, M. C.; Schubert, A. G.; Shanks, B.; Shima, T.; Shirchenko, M.; Snavely, K. J.; Snyder, N.; Suriano, A. M.; Thompson, J.; Timkin, V.; Tornow, W.; Trimble, J. E.; Varner, R. L.; Vasilyev, S.; Vetter, K.; Vorren, K.; White, B. R.; Wilkerson, J. F.; Wiseman, C.; Xu, W.; Yakushev, E.; Young, A. R.; Yu, C.-H.; Yumatov, V.

The Majorana Demonstrator is an array of natural and enriched high purity germanium detectors that will search for the neutrinoless double-beta decay of 76Ge and perform a search for weakly interacting massive particles (WIMPs) with masses below 10 GeV. As part of the Majorana research and development efforts, we have deployed a modified, low-background broad energy germanium detector at the Kimballton Underground Research Facility. With its sub-keV energy threshold, this detector is sensitive to potential non-Standard Model physics, including interactions with WIMPs. We discuss the backgrounds present in the WIMP region of interest and explore the impact of slow surface event contamination when searching for a WIMP signal.

Semantic interpretation of search engine resultant

Science.gov (United States)

Nasution, M. K. M.

2018-01-01

In semantic, logical language can be interpreted in various forms, but the certainty of meaning is included in the uncertainty, which directly always influences the role of technology. One results of this uncertainty applies to search engines as user interfaces with information spaces such as the Web. Therefore, the behaviour of search engine results should be interpreted with certainty through semantic formulation as interpretation. Behaviour formulation shows there are various interpretations that can be done semantically either temporary, inclusion, or repeat.

Force sensitive carbon nanotube arrays for biologically inspired airflow sensing

International Nuclear Information System (INIS)

Maschmann, Matthew R; Ehlert, Gregory J; Baur, Jeffery W; Dickinson, Ben

2012-01-01

The compressive electromechanical response of aligned carbon nanotube (CNT) arrays is evaluated for use as an artificial hair sensor (AHS) transduction element. CNT arrays with heights of 12, 75, and 225 µm are examined. The quasi-static and dynamic sensitivity to force, response time, and signal drift are examined within the range of applied stresses predicted by a mechanical model applicable to the conceptual CNT array-based AHS (0–1 kPa). Each array is highly sensitive to compressive loading, with a maximum observed gauge factor of 114. The arrays demonstrate a repeatable response to dynamic cycling after a break-in period of approximately 50 cycles. Utilizing a four-wire measurement electrode configuration, the change in contact resistance between the array and the electrodes is observed to dominate the electromechanical response of the arrays. The response time of the CNT arrays is of the order of 10 ms. When the arrays are subjected to constant stress, mechanical creep is observed that results in a signal drift that generally diminishes the responsiveness of the arrays, particularly at stress approaching 1 kPa. The results of this study serve as a preliminary proof of concept for utilizing CNT arrays as a transduction mechanism for a proposed artificial hair sensor. Such a low profile and light-weight flow sensor is expected to have application in a number of applications including navigation and state awareness of small air vehicles, similar in function to natural hair cell receptors utilized by insects and bats. (paper)

Force sensitive carbon nanotube arrays for biologically inspired airflow sensing

Science.gov (United States)

Maschmann, Matthew R.; Dickinson, Ben; Ehlert, Gregory J.; Baur, Jeffery W.

2012-09-01

The compressive electromechanical response of aligned carbon nanotube (CNT) arrays is evaluated for use as an artificial hair sensor (AHS) transduction element. CNT arrays with heights of 12, 75, and 225 µm are examined. The quasi-static and dynamic sensitivity to force, response time, and signal drift are examined within the range of applied stresses predicted by a mechanical model applicable to the conceptual CNT array-based AHS (0-1 kPa). Each array is highly sensitive to compressive loading, with a maximum observed gauge factor of 114. The arrays demonstrate a repeatable response to dynamic cycling after a break-in period of approximately 50 cycles. Utilizing a four-wire measurement electrode configuration, the change in contact resistance between the array and the electrodes is observed to dominate the electromechanical response of the arrays. The response time of the CNT arrays is of the order of 10 ms. When the arrays are subjected to constant stress, mechanical creep is observed that results in a signal drift that generally diminishes the responsiveness of the arrays, particularly at stress approaching 1 kPa. The results of this study serve as a preliminary proof of concept for utilizing CNT arrays as a transduction mechanism for a proposed artificial hair sensor. Such a low profile and light-weight flow sensor is expected to have application in a number of applications including navigation and state awareness of small air vehicles, similar in function to natural hair cell receptors utilized by insects and bats.

Contextual cueing of tactile search is coded in an anatomical reference frame.

Science.gov (United States)

Assumpção, Leonardo; Shi, Zhuanghua; Zang, Xuelian; Müller, Hermann J; Geyer, Thomas

2018-04-01

This work investigates the reference frame(s) underlying tactile context memory, a form of statistical learning in a tactile (finger) search task. In this task, if a searched-for target object is repeatedly encountered within a stable spatial arrangement of task-irrelevant distractors, detecting the target becomes more efficient over time (relative to nonrepeated arrangements), as learned target-distractor spatial associations come to guide tactile search, thus cueing attention to the target location. Since tactile search displays can be represented in several reference frames, including multiple external and an anatomical frame, in Experiment 1 we asked whether repeated search displays are represented in tactile memory with reference to an environment-centered or anatomical reference frame. In Experiment 2, we went on examining a hand-centered versus anatomical reference frame of tactile context memory. Observers performed a tactile search task, divided into a learning and test session. At the transition between the two sessions, we introduced postural manipulations of the hands (crossed ↔ uncrossed in Expt. 1; palm-up ↔ palm-down in Expt. 2) to determine the reference frame of tactile contextual cueing. In both experiments, target-distractor associations acquired during learning transferred to the test session when the placement of the target and distractors was held constant in anatomical, but not external, coordinates. In the latter, RTs were even slower for repeated displays. We conclude that tactile contextual learning is coded in an anatomical reference frame. (PsycINFO Database Record (c) 2018 APA, all rights reserved).

Initial Search for Triggered Gamma Emission from {sup 178}Hf{sup m2} Using the YSU Miniball Array

Energy Technology Data Exchange (ETDEWEB)

Carroll, J. J.; Burnett, J.; Drummond, T.; Lepak, J.; Propri, R.; Smith, D. [Youngstown State University, Department of Physics and Astronomy, Center for Photon-Induced Processes (United States); Karamian, S. A.; Adam, J. [Joint Institute for Nuclear Research (Russian Federation); Stedile, F. [Universitaet Stuttgart, Institut fuer Strahlenphysik (Germany); Agee, F. J. [Air Force Office of Scientific Research, AFOSR/NE (United States)

2002-11-15

Experiments with the long-lived, high-K isomer {sup 178}Hf{sup m2} have been recognized as intriguing tests of multi-quasiparticle state structures and their interactions with external radiation. A triggered release of the energy stored by this isomer, 2.5 MeV per nucleus or 1.2 GJ/gram, in the form of a gamma-ray burst might prove valuable for numerous applications. The observation of 'accelerated' decay of {sup 178}Hf{sup m2} during irradiation by 90-keV bremsstrahlung has already been reported, but with poor statistical accuracy due to the experimental approach. That approach employed single Ge detectors to seek increases in the areas of peaks at energies corresponding to transitions in the spontaneous decay of the isomer. The need for better quality data to confirm those results has motivated the development of improved detection concepts. One such concept was utilized here to perform an initial search for low-energy (<20 keV) triggered gamma emission from {sup 178}Hf{sup m2} using the YSU miniball detector array.

Featural Guidance in Conjunction Search: The Contrast between Orientation and Color

Science.gov (United States)

Anderson, Giles M.; Heinke, Dietmar; Humphreys, Glyn W.

2010-01-01

Four experiments examined the effects of precues on visual search for targets defined by a color-orientation conjunction. Experiment 1 showed that cueing the identity of targets enhanced the efficiency of search. Cueing effects were stronger with color than with orientation cues, but this advantage was additive across array size. Experiment 2…

CalMagNet – an array of search coil magnetometers monitoring ultra low frequency activity in California

Directory of Open Access Journals (Sweden)

C. Dunson

2008-04-01

Full Text Available The California Magnetometer Network (CalMagNet consists of sixty-eight triaxial search-coil magnetometer systems measuring Ultra Low Frequency (ULF, 0.001–16 Hz, magnetic field fluctuations in California. CalMagNet provides data for comprehensive multi-point measurements of specific events in the Pc 1–Pc 5 range at mid-latitudes as well as a systematic, long-term study of ULF signals in active fault regions in California. Typical events include geomagnetic micropulsations and spectral resonant structures associated with the ionospheric Alfvén resonator. This paper provides a technical overview of the CalMagNet sensors and data processing systems. The network is composed of ten reference stations and fifty-eight local monitoring stations. The primary instruments at each site are three orthogonal induction coil magnetometers. A geophone monitors local site vibration. The systems are designed for future sensor expansion and include resources for monitoring four additional channels. Data is currently sampled at 32 samples per second with a 24-bit converter and time tagged with a GPS-based timing system. Several examples of representative magnetic fluctuations and signals as measured by the array are given.

STEPS: a grid search methodology for optimized peptide identification filtering of MS/MS database search results.

Science.gov (United States)

Piehowski, Paul D; Petyuk, Vladislav A; Sandoval, John D; Burnum, Kristin E; Kiebel, Gary R; Monroe, Matthew E; Anderson, Gordon A; Camp, David G; Smith, Richard D

2013-03-01

For bottom-up proteomics, there are wide variety of database-searching algorithms in use for matching peptide sequences to tandem MS spectra. Likewise, there are numerous strategies being employed to produce a confident list of peptide identifications from the different search algorithm outputs. Here we introduce a grid-search approach for determining optimal database filtering criteria in shotgun proteomics data analyses that is easily adaptable to any search. Systematic Trial and Error Parameter Selection--referred to as STEPS--utilizes user-defined parameter ranges to test a wide array of parameter combinations to arrive at an optimal "parameter set" for data filtering, thus maximizing confident identifications. The benefits of this approach in terms of numbers of true-positive identifications are demonstrated using datasets derived from immunoaffinity-depleted blood serum and a bacterial cell lysate, two common proteomics sample types. © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

ACCA phosphopeptide recognition by the BRCT repeats of BRCA1.

Science.gov (United States)

Ray, Hind; Moreau, Karen; Dizin, Eva; Callebaut, Isabelle; Venezia, Nicole Dalla

2006-06-16

The tumour suppressor gene BRCA1 encodes a 220 kDa protein that participates in multiple cellular processes. The BRCA1 protein contains a tandem of two BRCT repeats at its carboxy-terminal region. The majority of disease-associated BRCA1 mutations affect this region and provide to the BRCT repeats a central role in the BRCA1 tumour suppressor function. The BRCT repeats have been shown to mediate phospho-dependant protein-protein interactions. They recognize phosphorylated peptides using a recognition groove that spans both BRCT repeats. We previously identified an interaction between the tandem of BRCA1 BRCT repeats and ACCA, which was disrupted by germ line BRCA1 mutations that affect the BRCT repeats. We recently showed that BRCA1 modulates ACCA activity through its phospho-dependent binding to ACCA. To delineate the region of ACCA that is crucial for the regulation of its activity by BRCA1, we searched for potential phosphorylation sites in the ACCA sequence that might be recognized by the BRCA1 BRCT repeats. Using sequence analysis and structure modelling, we proposed the Ser1263 residue as the most favourable candidate among six residues, for recognition by the BRCA1 BRCT repeats. Using experimental approaches, such as GST pull-down assay with Bosc cells, we clearly showed that phosphorylation of only Ser1263 was essential for the interaction of ACCA with the BRCT repeats. We finally demonstrated by immunoprecipitation of ACCA in cells, that the whole BRCA1 protein interacts with ACCA when phosphorylated on Ser1263.

Cache-Oblivious Search Trees via Binary Trees of Small Height

DEFF Research Database (Denmark)

Brodal, G.S.; Fagerberg, R.; Jacob, R.

2002-01-01

We propose a version of cache oblivious search trees which is simpler than the previous proposal of Bender, Demaine and Farach-Colton and has the same complexity bounds. In particular, our data structure avoids the use of weight balanced B-trees, and can be implemented as just a single array......, and range queries in worst case O(logB n + k/B) memory transfers, where k is the size of the output.The basic idea of our data structure is to maintain a dynamic binary tree of height log n+O(1) using existing methods, embed this tree in a static binary tree, which in turn is embedded in an array in a cache...... oblivious fashion, using the van Emde Boas layout of Prokop.We also investigate the practicality of cache obliviousness in the area of search trees, by providing an empirical comparison of different methods for laying out a search tree in memory....

Sorting white blood cells in microfabricated arrays

Science.gov (United States)

Castelino, Judith Andrea Rose

Fractionating white cells in microfabricated arrays presents the potential for detecting cells with abnormal adhesive or deformation properties. A possible application is separating nucleated fetal red blood cells from maternal blood. Since fetal cells are nucleated, it is possible to extract genetic information about the fetus from them. Separating fetal cells from maternal blood would provide a low cost noninvasive prenatal diagnosis for genetic defects, which is not currently available. We present results showing that fetal cells penetrate further into our microfabricated arrays than adult cells, and that it is possible to enrich the fetal cell fraction using the arrays. We discuss modifications to the array which would result in further enrichment. Fetal cells are less adhesive and more deformable than adult white cells. To determine which properties limit penetration, we compared the penetration of granulocytes and lymphocytes in arrays with different etch depths, constriction size, constriction frequency, and with different amounts of metabolic activity. The penetration of lymphocytes and granulocytes into constrained and unconstrained arrays differed qualitatively. In constrained arrays, the cells were activated by repeated shearing, and the number of cells stuck as a function of distance fell superexponentially. In unconstrained arrays the number of cells stuck fell slower than an exponential. We attribute this result to different subpopulations of cells with different sticking parameters. We determined that penetration in unconstrained arrays was limited by metabolic processes, and that when metabolic activity was reduced penetration was limited by deformability. Fetal cells also contain a different form of hemoglobin with a higher oxygen affinity than adult hemoglobin. Deoxygenated cells are paramagnetic and are attracted to high magnetic field gradients. We describe a device which can separate cells using 10 μm magnetic wires to deflect the paramagnetic

Improvement of Data Acquisition of the BRTR (PS-43) Seismic Array

Science.gov (United States)

Ozel, N. M.; Kocak, S.; Semin, K. U.; Necmioglu, O.; Destici, T. C.; Teoman, U.

2010-05-01

Bogazici University, Kandilli Observatory and Earthquake Research Institute(KOERI) is currently operating the BRTR( PS-43) seismic arrays located in the vicinity of Ankara and town Keskin, providing real-time data to IDC. PS-43 is composed of two sub-arrays, the medium-period array with a ~45km radius located in Ankara and the short-period array with ~3 km radius located in Keskin. In 2009, data availabilty of the BRTR is exceeded %98 that value is the requirment of IDC. Substantial contribution to obtain this availabiliy is implementing the improvements that mainly replacement of the grid type parabolic antennas with the heavy-duty dish antennas at necessary sites called the repeater sites RE-BRTR (CCF), RE-PS43 (Mt. Elmadag), CF-PS43 (Central Recording Building) and all MP sites. Even this renewed system is at the tentative stage, communication status of the seismic arrays are solid and continuous. BRTR is expecting another improvement, June 2010, about the power system at Mt. Elmadag and the MP site BR237. Completion of this improvement will be stabilize of our current mission.

On site calibration for new fluorescence detectors of the telescope array experiment

International Nuclear Information System (INIS)

Tokuno, H.; Murano, Y.; Kawana, S.; Tameda, Y.; Taketa, A.; Ikeda, D.; Udo, S.; Ogio, S.; Fukushima, M.; Azuma, R.; Fukuda, M.; Inoue, N.; Kadota, K.; Kakimoto, F.; Sagawa, H.; Sakurai, N.; Shibata, T.; Takeda, M.; Tsunesada, Y.

2009-01-01

The Telescope Array experiment is searching for the origin of ultra-high energy cosmic rays using a ground array of particle detectors and three fluorescence telescope stations. The precise calibration of the fluorescence detectors is important for small systematic errors in shower reconstruction. This paper details the process of calibrating cameras for two of the fluorescence telescope stations. This paper provides the operational results of these camera calibrations.

Neural correlates of context-dependent feature conjunction learning in visual search tasks.

Science.gov (United States)

Reavis, Eric A; Frank, Sebastian M; Greenlee, Mark W; Tse, Peter U

2016-06-01

Many perceptual learning experiments show that repeated exposure to a basic visual feature such as a specific orientation or spatial frequency can modify perception of that feature, and that those perceptual changes are associated with changes in neural tuning early in visual processing. Such perceptual learning effects thus exert a bottom-up influence on subsequent stimulus processing, independent of task-demands or endogenous influences (e.g., volitional attention). However, it is unclear whether such bottom-up changes in perception can occur as more complex stimuli such as conjunctions of visual features are learned. It is not known whether changes in the efficiency with which people learn to process feature conjunctions in a task (e.g., visual search) reflect true bottom-up perceptual learning versus top-down, task-related learning (e.g., learning better control of endogenous attention). Here we show that feature conjunction learning in visual search leads to bottom-up changes in stimulus processing. First, using fMRI, we demonstrate that conjunction learning in visual search has a distinct neural signature: an increase in target-evoked activity relative to distractor-evoked activity (i.e., a relative increase in target salience). Second, we demonstrate that after learning, this neural signature is still evident even when participants passively view learned stimuli while performing an unrelated, attention-demanding task. This suggests that conjunction learning results in altered bottom-up perceptual processing of the learned conjunction stimuli (i.e., a perceptual change independent of the task). We further show that the acquired change in target-evoked activity is contextually dependent on the presence of distractors, suggesting that search array Gestalts are learned. Hum Brain Mapp 37:2319-2330, 2016. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Social value and information quality in online health information search

OpenAIRE

Hameed, Tahir; Swar, Bobby

2016-01-01

This paper extends and validates a model of value-driven online healthcare information search in online shared contexts. Perceived value is an important factor behind users' decisions concerning search, consumption and reuse of products and services. The role of utilitarian, hedonic and epistemic value of information in user satisfaction and intention to repeat online search is well recognized, but little support has been found for social value affecting user satisfaction critical for such de...

Top-down contextual knowledge guides visual attention in infancy.

Science.gov (United States)

Tummeltshammer, Kristen; Amso, Dima

2017-10-26

The visual context in which an object or face resides can provide useful top-down information for guiding attention orienting, object recognition, and visual search. Although infants have demonstrated sensitivity to covariation in spatial arrays, it is presently unclear whether they can use rapidly acquired contextual knowledge to guide attention during visual search. In this eye-tracking experiment, 6- and 10-month-old infants searched for a target face hidden among colorful distracter shapes. Targets appeared in Old or New visual contexts, depending on whether the visual search arrays (defined by the spatial configuration, shape and color of component items in the search display) were repeated or newly generated throughout the experiment. Targets in Old contexts appeared in the same location within the same configuration, such that context covaried with target location. Both 6- and 10-month-olds successfully distinguished between Old and New contexts, exhibiting faster search times, fewer looks at distracters, and more anticipation of targets when contexts repeated. This initial demonstration of contextual cueing effects in infants indicates that they can use top-down information to facilitate orienting during memory-guided visual search. © 2017 John Wiley & Sons Ltd.

Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping

Directory of Open Access Journals (Sweden)

Harvey Steven P

2007-03-01

Full Text Available Abstract Background The facultative, intracellular bacterium Burkholderia pseudomallei is the causative agent of melioidosis, a serious infectious disease of humans and animals. We identified and categorized tandem repeat arrays and their distribution throughout the genome of B. pseudomallei strain K96243 in order to develop a genetic typing method for B. pseudomallei. We then screened 104 of the potentially polymorphic loci across a diverse panel of 31 isolates including B. pseudomallei, B. mallei and B. thailandensis in order to identify loci with varying degrees of polymorphism. A subset of these tandem repeat arrays were subsequently developed into a multiple-locus VNTR analysis to examine 66 B. pseudomallei and 21 B. mallei isolates from around the world, as well as 95 lineages from a serial transfer experiment encompassing ~18,000 generations. Results B. pseudomallei contains a preponderance of tandem repeat loci throughout its genome, many of which are duplicated elsewhere in the genome. The majority of these loci are composed of repeat motif lengths of 6 to 9 bp with 4 to 10 repeat units and are predominately located in intergenic regions of the genome. Across geographically diverse B. pseudomallei and B.mallei isolates, the 32 VNTR loci displayed between 7 and 28 alleles, with Nei's diversity values ranging from 0.47 and 0.94. Mutation rates for these loci are comparable (>10-5 per locus per generation to that of the most diverse tandemly repeated regions found in other less diverse bacteria. Conclusion The frequency, location and duplicate nature of tandemly repeated regions within the B. pseudomallei genome indicate that these tandem repeat regions may play a role in generating and maintaining adaptive genomic variation. Multiple-locus VNTR analysis revealed extensive diversity within the global isolate set containing B. pseudomallei and B. mallei, and it detected genotypic differences within clonal lineages of both species that were

When Does Repeated Search in Scenes Involve Memory? Looking at versus Looking for Objects in Scenes

Science.gov (United States)

Vo, Melissa L. -H.; Wolfe, Jeremy M.

2012-01-01

One might assume that familiarity with a scene or previous encounters with objects embedded in a scene would benefit subsequent search for those items. However, in a series of experiments we show that this is not the case: When participants were asked to subsequently search for multiple objects in the same scene, search performance remained…

Natural Language Search Interfaces: Health Data Needs Single-Field Variable Search.

Science.gov (United States)

Jay, Caroline; Harper, Simon; Dunlop, Ian; Smith, Sam; Sufi, Shoaib; Goble, Carole; Buchan, Iain

2016-01-14

Data discovery, particularly the discovery of key variables and their inter-relationships, is key to secondary data analysis, and in-turn, the evolving field of data science. Interface designers have presumed that their users are domain experts, and so they have provided complex interfaces to support these "experts." Such interfaces hark back to a time when searches needed to be accurate first time as there was a high computational cost associated with each search. Our work is part of a governmental research initiative between the medical and social research funding bodies to improve the use of social data in medical research. The cross-disciplinary nature of data science can make no assumptions regarding the domain expertise of a particular scientist, whose interests may intersect multiple domains. Here we consider the common requirement for scientists to seek archived data for secondary analysis. This has more in common with search needs of the "Google generation" than with their single-domain, single-tool forebears. Our study compares a Google-like interface with traditional ways of searching for noncomplex health data in a data archive. Two user interfaces are evaluated for the same set of tasks in extracting data from surveys stored in the UK Data Archive (UKDA). One interface, Web search, is "Google-like," enabling users to browse, search for, and view metadata about study variables, whereas the other, traditional search, has standard multioption user interface. Using a comprehensive set of tasks with 20 volunteers, we found that the Web search interface met data discovery needs and expectations better than the traditional search. A task × interface repeated measures analysis showed a main effect indicating that answers found through the Web search interface were more likely to be correct (F1,19=37.3, Pnatural language search interfaces for variable search supporting in particular: query reformulation; data browsing; faceted search; surrogates; relevance

bicep2/KECK ARRAY. IV. OPTICAL CHARACTERIZATION AND PERFORMANCE OF THE bicep2 AND KECK ARRAY EXPERIMENTS

Energy Technology Data Exchange (ETDEWEB)

Ade, P. A. R. [School of Physics and Astronomy, Cardiff University, Cardiff, CF24 3AA (United Kingdom); Aikin, R. W.; Bock, J. J.; Brevik, J. A.; Filippini, J. P.; Golwala, S. R.; Hildebrandt, S. R.; Hui, H. [Department of Physics, California Institute of Technology, Pasadena, CA 91125 (United States); Barkats, D. [Joint ALMA Observatory, ESO, Santiago (Chile); Benton, S. J. [Department of Physics, University of Toronto, Toronto, ON (Canada); Bischoff, C. A.; Bradford, K. J.; Buder, I. [Harvard-Smithsonian Center for Astrophysics, 60 Garden Street MS 42, Cambridge, MA 02138 (United States); Bullock, E. [Minnesota Institute for Astrophysics, University of Minnesota, Minneapolis, MN 55455 (United States); Dowell, C. D. [Jet Propulsion Laboratory, Pasadena, CA 91109 (United States); Duband, L. [Université Grenoble Alpes, CEA INAC-SBT, F-38000 Grenoble (France); Fliescher, S. [Department of Physics, University of Minnesota, Minneapolis, MN 55455 (United States); Halpern, M.; Hasselfield, M. [Department of Physics and Astronomy, University of British Columbia, Vancouver, BC (Canada); Hilton, G. C., E-mail: avieregg@kicp.uchicago.edu [National Institute of Standards and Technology, Boulder, CO 80305 (United States); Collaboration: bicep2 and Keck Array Collaborations; and others

2015-06-20

bicep2 and the Keck Array are polarization-sensitive microwave telescopes that observe the cosmic microwave background (CMB) from the South Pole at degree angular scales in search of a signature of inflation imprinted as B-mode polarization in the CMB. bicep2 was deployed in late 2009, observed for three years until the end of 2012 at 150 GHz with 512 antenna-coupled transition edge sensor bolometers, and has reported a detection of B-mode polarization on degree angular scales. The Keck Array was first deployed in late 2010 and will observe through 2016 with five receivers at several frequencies (95, 150, and 220 GHz). bicep2 and the Keck Array share a common optical design and employ the field-proven bicep1 strategy of using small-aperture, cold, on-axis refractive optics, providing excellent control of systematics while maintaining a large field of view. This design allows for full characterization of far-field optical performance using microwave sources on the ground. Here we describe the optical design of both instruments and report a full characterization of the optical performance and beams of bicep2 and the Keck Array at 150 GHz.

ARSTEC, Nonlinear Optimization Program Using Random Search Method

International Nuclear Information System (INIS)

Rasmuson, D. M.; Marshall, N. H.

1979-01-01

1 - Description of problem or function: The ARSTEC program was written to solve nonlinear, mixed integer, optimization problems. An example of such a problem in the nuclear industry is the allocation of redundant parts in the design of a nuclear power plant to minimize plant unavailability. 2 - Method of solution: The technique used in ARSTEC is the adaptive random search method. The search is started from an arbitrary point in the search region and every time a point that improves the objective function is found, the search region is centered at that new point. 3 - Restrictions on the complexity of the problem: Presently, the maximum number of independent variables allowed is 10. This can be changed by increasing the dimension of the arrays

Scalable gamma-ray camera for wide-area search based on silicon photomultipliers array

Science.gov (United States)

Jeong, Manhee; Van, Benjamin; Wells, Byron T.; D'Aries, Lawrence J.; Hammig, Mark D.

2018-03-01

Portable coded-aperture imaging systems based on scintillators and semiconductors have found use in a variety of radiological applications. For stand-off detection of weakly emitting materials, large volume detectors can facilitate the rapid localization of emitting materials. We describe a scalable coded-aperture imaging system based on 5.02 × 5.02 cm2 CsI(Tl) scintillator modules, each partitioned into 4 × 4 × 20 mm3 pixels that are optically coupled to 12 × 12 pixel silicon photo-multiplier (SiPM) arrays. The 144 pixels per module are read-out with a resistor-based charge-division circuit that reduces the readout outputs from 144 to four signals per module, from which the interaction position and total deposited energy can be extracted. All 144 CsI(Tl) pixels are readily distinguishable with an average energy resolution, at 662 keV, of 13.7% FWHM, a peak-to-valley ratio of 8.2, and a peak-to-Compton ratio of 2.9. The detector module is composed of a SiPM array coupled with a 2 cm thick scintillator and modified uniformly redundant array mask. For the image reconstruction, cross correlation and maximum likelihood expectation maximization methods are used. The system shows a field of view of 45° and an angular resolution of 4.7° FWHM.

Final results of the EDELWEISS-II WIMP search using a 4-kg array of cryogenic germanium detectors with interleaved electrodes

International Nuclear Information System (INIS)

Armengaud, E.; Augier, C.; Benoit, A.; Berge, L.; Bluemer, J.; Broniatowski, A.; Brudanin, V.; Censier, B.; Chardin, G.; Chapellier, M.; Charlieux, F.; Coulter, P.; Cox, G.A.; Defay, X.; De Jesus, M.; Dolgorouki, Y.; Domange, J.; Dumoulin, L.

2011-01-01

The EDELWEISS-II Collaboration has completed a direct search for WIMP dark matter with an array of ten 400-g cryogenic germanium detectors in operation at the Laboratoire Souterrain de Modane. The combined use of thermal phonon sensors and charge collection electrodes with an interleaved geometry enables the efficient rejection of γ-induced radioactivity as well as near-surface interactions. A total effective exposure of 384 kg d has been achieved, mostly coming from fourteen months of continuous operation. Five nuclear recoil candidates are observed above 20 keV, while the estimated background is 3.0 events. The result is interpreted in terms of limits on the cross-section of spin-independent interactions of WIMPs and nucleons. A cross-section of 4.4x10 -8 pb is excluded at 90%CL for a WIMP mass of 85 GeV. New constraints are also set on models where the WIMP-nucleon scattering is inelastic.

Highly Deformable Origami Paper Photodetector Arrays

KAUST Repository

Lin, Chun-Ho

2017-09-25

Flexible electronics will form the basis of many next-generation technologies, such as wearable devices, biomedical sensors, the Internet of things, and more. However, most flexible devices can bear strains of less than 300% as a result of stretching. In this work, we demonstrate a simple and low-cost paper-based photodetector array featuring superior deformability using printable ZnO nanowires, carbon electrodes, and origami-based techniques. With a folded Miura structure, the paper photodetector array can be oriented in four different directions via tessellated parallelograms to provide the device with excellent omnidirectional light harvesting capabilities. Additionally, we demonstrate that the device can be repeatedly stretched (up to 1000% strain), bent (bending angle ±30°), and twisted (up to 360°) without degrading performance as a result of the paper folding technique, which enables the ZnO nanowire layers to remain rigid even as the device is deformed. The origami-based strategy described herein suggests avenues for the development of next-generation deformable optoelectronic applications.

Spatial attention can bias search in visual short-term memory

Directory of Open Access Journals (Sweden)

Anna C Nobre

2008-03-01

Full Text Available Whereas top-down attentional control is known to bias perceptual functions at many levels of stimulus analysis, its possible influence over memory-related functions remains uncharted. Our experiment combined behavioral measures and event-related potentials (ERPs to test the ability of spatial orienting to bias functions associated with visual short-term memory (VSTM, and to shed light on the neural mechanisms involved. In particular, we investigated whether orienting attention to a spatial location within an array maintained in VSTM could facilitate the search for a specific remembered item. Participants viewed arrays of one, two or four differently colored items, followed by an informative spatial (100% valid or uninformative neutral retro-cue (1500–2500 ms after the array, and later by a probe stimulus (500–1000 ms after the retro-cue. The task was to decide whether the probe stimulus had been present in the array. Behavioral results showed that spatial retro-cues improved both accuracy and response times for making decisions about the presence of the probe item in VSTM, and significantly attenuated performance decrements caused by increasing VSTM load. We also identified a novel ERP component (N3RS specifically associated with searching for an item within VSTM. Paralleling the behavioral results, the amplitude and duration of the N3RS systematically increased with VSTM load in neutral retro-cue trials. When spatial retro-cues were provided, this “retro-search” component was absent. Our findings clearly show that the infl uence of top-down attentional biases extends to mnemonic functions, and, specifically, that searching for items within VSTM can be under flexible voluntary control.

A recurrent neural network for adaptive beamforming and array correction.

Science.gov (United States)

Che, Hangjun; Li, Chuandong; He, Xing; Huang, Tingwen

2016-08-01

In this paper, a recurrent neural network (RNN) is proposed for solving adaptive beamforming problem. In order to minimize sidelobe interference, the problem is described as a convex optimization problem based on linear array model. RNN is designed to optimize system's weight values in the feasible region which is derived from arrays' state and plane wave's information. The new algorithm is proven to be stable and converge to optimal solution in the sense of Lyapunov. So as to verify new algorithm's performance, we apply it to beamforming under array mismatch situation. Comparing with other optimization algorithms, simulations suggest that RNN has strong ability to search for exact solutions under the condition of large scale constraints. Copyright © 2016 Elsevier Ltd. All rights reserved.

Fabrication of polymer micro-lens array with pneumatically diaphragm-driven drop-on-demand inkjet technology.

Science.gov (United States)

Xie, Dan; Zhang, Honghai; Shu, Xiayun; Xiao, Junfeng

2012-07-02

The paper reports an effective method to fabricate micro-lens arrays with the ultraviolet-curable polymer, using an original pneumatically diaphragm-driven drop-on-demand inkjet system. An array of plano convex micro-lenses can be formed on the glass substrate due to surface tension and hydrophobic effect. The micro-lens arrays have uniform focusing function, smooth and real planar surface. The fabrication process showed good repeatability as well, fifty micro-lenses randomly selected form 9 × 9 miro-lens array with an average diameter of 333.28μm showed 1.1% variations. Also, the focal length, the surface roughness and optical property of the fabricated micro-lenses are measured, analyzed and proved satisfactory. The technique shows great potential for fabricating polymer micro-lens arrays with high flexibility, simple technological process and low production cost.

Report for Development of a Census Array and Evaluation of the Array to Detect Biothreat Agents and Environmental Samples for DHS

Energy Technology Data Exchange (ETDEWEB)

Jaing, C; Jackson, P

2011-04-14

The objective of this project is to provide DHS a comprehensive evaluation of the current genomic technologies including genotyping, Taqman PCR, multiple locus variable tandem repeat analysis (MLVA), microarray and high-throughput DNA sequencing in the analysis of biothreat agents from complex environmental samples. This report focuses on the design, testing and results of samples on the Census Array. We designed a Census/Detection Array to detect all sequenced viruses (including phage), bacteria (eubacteria), and plasmids. Family-specific probes were selected for all sequenced viral and bacterial complete genomes, segments, and plasmids. Probes were designed to tolerate some sequence variation to enable detection of divergent species with homology to sequenced organisms, and to be unique relative to the human genome. A combination of 'detection' probes with high levels of conservation within a family plus 'census' probes targeting strain/isolate specific regions enabled detection and taxonomic classification from the level of family down to the strain. The array has wider coverage of bacterial and viral targets based on more recent sequence data and more probes per target than other microbial detection/discovery arrays in the literature. We tested the array with purified bacterial and viral DNA/RNA samples, artificial mixes of known bacterial/viral samples, spiked DNA against complex background including BW aerosol samples and soil samples, and environmental samples to evaluate the array's sensitivity and forensic capability. The data were analyzed using our novel maximum likelihood software. For most of the organisms tested, we have achieved at least species level discrimination.

Finger Search in the Implicit Model

DEFF Research Database (Denmark)

Brodal, Gerth Stølting; Nielsen, Jesper Asbjørn Sindahl; Truelsen, Jakob

2012-01-01

We address the problem of creating a dictionary with the finger search property in the strict implicit model, where no information is stored between operations, except the array of elements. We show that for any implicit dictionary supporting finger searches in q(t) = Ω(logt) time, the time to move...... the finger to another element is Ω(q− 1(logn)), where t is the rank distance between the query element and the finger. We present an optimal implicit static structure matching this lower bound. We furthermore present a near optimal implicit dynamic structure supporting search, change-finger, insert......, and delete in times $\\mathcal{O}(q(t))$, $\\mathcal{O}(q^{-1}(\\log n)\\log n)$, $\\mathcal{O}(\\log n)$, and $\\mathcal{O}(\\log n)$, respectively, for any q(t) = Ω(logt). Finally we show that the search operation must take Ω(logn) time for the special case where the finger is always changed to the element...

Increasing Pulsar Timing Array Sensitivity Through Addition of Millisecond Pulsars

Science.gov (United States)

DeCesar, Megan E.; Crawford, Fronefield; Ferrara, Elizabeth; Lynch, Ryan; Mingarelli, Chiara; Levin Preston, Lina; Ransom, Scott; Romano, Joseph; Simon, Joseph; Spiewak, Renee; Stovall, Kevin; Swiggum, Joe; Taylor, Stephen; Green Bank North Celestial Cap Pulsar Survey, Fermi LAT Collaboration, Fermi Pulsar Search Consortium

2018-01-01

Siemens et al. (2013) and Taylor et al. (2016) demonstrated the importance of increasing the number of millisecond pulsars (MSPs) in pulsar timing arrays (PTAs) in order to increase the sensitivity of the array and decrease the time-to-detection of a gravitational wave background (GWB). In particular, they predict that adding four MSPs per year to the NANOGrav and International PTAs will likely yield a GWB detection in less than a decade. A more even distribution of MSPs across the sky is also important for discriminating a GWB signal from a non-quadrupolar background (Sampson et al., in prep). Pulsar surveys and targeted searches have consistently led to additions of 4 or more MSPs per year to PTAs. I will describe these ongoing efforts, particularly in the context of the Green Bank North Celestial Cap pulsar survey and Fermi-guided searches at Green Bank and Arecibo that seek to find MSPs in low-pulsar-density regions of the sky.

The acceptance of surface detector arrays for high energy cosmological muon neutrinos

International Nuclear Information System (INIS)

Vo Van Thuan; Hoang Van Khanh

2011-01-01

In order to search for ultra-high energy cosmological earth-skimming muon neutrinos by the surface detector array (SD) similar to one of the Pierre Auger Observatory (PAO), we propose to use the transition electromagnetic radiation at the medium interface induced by earth-skimming muons for triggering a few of aligned neighboring Cherenkov SD stations. Simulations of the acceptance of a modeling SD array have been done to estimate the detection probability of earth-skimming muon neutrinos.

Measuring In-Home Walking Speed using Wall-Mounted RF Transceiver Arrays

Science.gov (United States)

Jacobs, Peter G.; Wan, Eric A.; Schafermeer, Erich; Adenwala, Fatema; Paul, Anindya S.; Preiser, Nick; Kaye, Jeffrey

2014-01-01

In this paper we present a new method for passively measuring walking speed using a small array of radio transceivers positioned on the walls of a hallway within a home. As a person walks between a radio transmitter and a receiver, the received signal strength (RSS) detected by the receiver changes in a repeatable pattern that may be used to estimate walking speed without the need for the person to wear any monitoring device. The transceivers are arranged as an array of 4 with a known distance between the array elements. Walking past the first pair of transceivers will cause a peak followed by a second peak when the person passes the second pair of transceivers. The time difference between these peaks is used to estimate walking speed directly. We further show that it is possible to estimate the walking speed by correlating the shape of the signal using a single pair of transceivers positioned across from each other in a hallway or doorframe. RMSE performance was less than 15 cm/s using a 2-element array, and less than 8 cm/s using a 4-element array relative to a gait mat used for ground truth. PMID:25570108

Optimizing Vector-Quantization Processor Architecture for Intelligent Query-Search Applications

Science.gov (United States)

Xu, Huaiyu; Mita, Yoshio; Shibata, Tadashi

2002-04-01

The architecture of a very large scale integration (VLSI) vector-quantization processor (VQP) has been optimized to develop a general-purpose intelligent query-search agent. The agent performs a similarity-based search in a large-volume database. Although similarity-based search processing is computationally very expensive, latency-free searches have become possible due to the highly parallel maximum-likelihood search architecture of the VQP chip. Three architectures of the VQP chip have been studied and their performances are compared. In order to give reasonable searching results according to the different policies, the concept of penalty function has been introduced into the VQP. An E-commerce real-estate agency system has been developed using the VQP chip implemented in a field-programmable gate array (FPGA) and the effectiveness of such an agency system has been demonstrated.

Method and apparatus for synthesis of arrays of DNA probes

Science.gov (United States)

Cerrina, Francesco; Sussman, Michael R.; Blattner, Frederick R.; Singh-Gasson, Sangeet; Green, Roland

2002-04-23

The synthesis of arrays of DNA probes sequences, polypeptides, and the like is carried out using a patterning process on an active surface of a substrate. An image is projected onto the active surface of the substrate utilizing an image former that includes a light source that provides light to a micromirror device comprising an array of electronically addressable micromirrors, each of which can be selectively tilted between one of at least two positions. Projection optics receives the light reflected from the micromirrors along an optical axis and precisely images the micromirrors onto the active surface of the substrate, which may be used to activate the surface of the substrate. The first level of bases may then be applied to the substrate, followed by development steps, and subsequent exposure of the substrate utilizing a different pattern of micromirrors, with further repeats until the elements of a two dimensional array on the substrate surface have an appropriate base bound thereto. The micromirror array can be controlled in conjunction with a DNA synthesizer supplying appropriate reagents to a flow cell containing the active substrate to control the sequencing of images presented by the micromirror array in coordination of the reagents provided to the substrate.

Central and Peripheral Vision Loss Differentially Affects Contextual Cueing in Visual Search

Science.gov (United States)

Geringswald, Franziska; Pollmann, Stefan

2015-01-01

Visual search for targets in repeated displays is more efficient than search for the same targets in random distractor layouts. Previous work has shown that this contextual cueing is severely impaired under central vision loss. Here, we investigated whether central vision loss, simulated with gaze-contingent displays, prevents the incidental…

Array capabilities and future arrays

International Nuclear Information System (INIS)

Radford, D.

1993-01-01

Early results from the new third-generation instruments GAMMASPHERE and EUROGAM are confirming the expectation that such arrays will have a revolutionary effect on the field of high-spin nuclear structure. When completed, GAMMASHPERE will have a resolving power am order of magnitude greater that of the best second-generation arrays. When combined with other instruments such as particle-detector arrays and fragment mass analysers, the capabilites of the arrays for the study of more exotic nuclei will be further enhanced. In order to better understand the limitations of these instruments, and to design improved future detector systems, it is important to have some intelligible and reliable calculation for the relative resolving power of different instrument designs. The derivation of such a figure of merit will be briefly presented, and the relative sensitivities of arrays currently proposed or under construction presented. The design of TRIGAM, a new third-generation array proposed for Chalk River, will also be discussed. It is instructive to consider how far arrays of Compton-suppressed Ge detectors could be taken. For example, it will be shown that an idealised open-quote perfectclose quotes third-generation array of 1000 detectors has a sensitivity an order of magnitude higher again than that of GAMMASPHERE. Less conventional options for new arrays will also be explored

Javascript Library for Developing Interactive Micro-Level Animations for Teaching and Learning Algorithms on One-Dimensional Arrays

Science.gov (United States)

Végh, Ladislav

2016-01-01

The first data structure that first-year undergraduate students learn during the programming and algorithms courses is the one-dimensional array. For novice programmers, it might be hard to understand different algorithms on arrays (e.g. searching, mirroring, sorting algorithms), because the algorithms dynamically change the values of elements. In…

A student's guide to searching the literature using online databases

Science.gov (United States)

Miller, Casey W.; Belyea, Dustin; Chabot, Michelle; Messina, Troy

2012-02-01

A method is described to empower students to efficiently perform general and specific literature searches using online resources [Miller et al., Am. J. Phys. 77, 1112 (2009)]. The method was tested on multiple groups, including undergraduate and graduate students with varying backgrounds in scientific literature searches. Students involved in this study showed marked improvement in their awareness of how and where to find scientific information. Repeated exposure to literature searching methods appears worthwhile, starting early in the undergraduate career, and even in graduate school orientation.

Recombination-dependent replication and gene conversion homogenize repeat sequences and diversify plastid genome structure.

Science.gov (United States)

Ruhlman, Tracey A; Zhang, Jin; Blazier, John C; Sabir, Jamal S M; Jansen, Robert K

2017-04-01

There is a misinterpretation in the literature regarding the variable orientation of the small single copy region of plastid genomes (plastomes). The common phenomenon of small and large single copy inversion, hypothesized to occur through intramolecular recombination between inverted repeats (IR) in a circular, single unit-genome, in fact, more likely occurs through recombination-dependent replication (RDR) of linear plastome templates. If RDR can be primed through both intra- and intermolecular recombination, then this mechanism could not only create inversion isomers of so-called single copy regions, but also an array of alternative sequence arrangements. We used Illumina paired-end and PacBio single-molecule real-time (SMRT) sequences to characterize repeat structure in the plastome of Monsonia emarginata (Geraniaceae). We used OrgConv and inspected nucleotide alignments to infer ancestral nucleotides and identify gene conversion among repeats and mapped long (>1 kb) SMRT reads against the unit-genome assembly to identify alternative sequence arrangements. Although M. emarginata lacks the canonical IR, we found that large repeats (>1 kilobase; kb) represent ∼22% of the plastome nucleotide content. Among the largest repeats (>2 kb), we identified GC-biased gene conversion and mapping filtered, long SMRT reads to the M. emarginata unit-genome assembly revealed alternative, substoichiometric sequence arrangements. We offer a model based on RDR and gene conversion between long repeated sequences in the M. emarginata plastome and provide support that both intra-and intermolecular recombination between large repeats, particularly in repeat-rich plastomes, varies unit-genome structure while homogenizing the nucleotide sequence of repeats. © 2017 Botanical Society of America.

FASTERp: A Feature Array Search Tool for Estimating Resemblance of Protein Sequences

Energy Technology Data Exchange (ETDEWEB)

Macklin, Derek; Egan, Rob; Wang, Zhong

2014-03-14

Metagenome sequencing efforts have provided a large pool of billions of genes for identifying enzymes with desirable biochemical traits. However, homology search with billions of genes in a rapidly growing database has become increasingly computationally impractical. Here we present our pilot efforts to develop a novel alignment-free algorithm for homology search. Specifically, we represent individual proteins as feature vectors that denote the presence or absence of short kmers in the protein sequence. Similarity between feature vectors is then computed using the Tanimoto score, a distance metric that can be rapidly computed on bit string representations of feature vectors. Preliminary results indicate good correlation with optimal alignment algorithms (Spearman r of 0.87, ~;;1,000,000 proteins from Pfam), as well as with heuristic algorithms such as BLAST (Spearman r of 0.86, ~;;1,000,000 proteins). Furthermore, a prototype of FASTERp implemented in Python runs approximately four times faster than BLAST on a small scale dataset (~;;1000 proteins). We are optimizing and scaling to improve FASTERp to enable rapid homology searches against billion-protein databases, thereby enabling more comprehensive gene annotation efforts.

Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus

DEFF Research Database (Denmark)

Deng, Ling; Kenchappa, Chandra Shekar; Peng, Xu

2012-01-01

CRISPR loci are essential components of the adaptive immune system of archaea and bacteria. They consist of long arrays of repeats separated by DNA spacers encoding guide RNAs (crRNA), which target foreign genetic elements. Cbp1 (CRISPR DNA repeat binding protein) binds specifically to the multiple...... direct repeats of CRISPR loci of members of the acidothermophilic, crenarchaeal order Sulfolobales. cbp1 gene deletion from Sulfolobus islandicus REY15A produced a strong reduction in pre-crRNA yields from CRISPR loci but did not inhibit the foreign DNA targeting capacity of the CRISPR/Cas system....... Conversely, overexpression of Cbp1 in S. islandicus generated an increase in pre-crRNA yields while the level of reverse strand transcripts from CRISPR loci remained unchanged. It is proposed that Cbp1 modulates production of longer pre-crRNA transcripts from CRISPR loci. A possible mechanism...

Running the figure to the ground: figure-ground segmentation during visual search.

Science.gov (United States)

Ralph, Brandon C W; Seli, Paul; Cheng, Vivian O Y; Solman, Grayden J F; Smilek, Daniel

2014-04-01

We examined how figure-ground segmentation occurs across multiple regions of a visual array during a visual search task. Stimuli consisted of arrays of black-and-white figure-ground images in which roughly half of each image depicted a meaningful object, whereas the other half constituted a less meaningful shape. The colours of the meaningful regions of the targets and distractors were either the same (congruent) or different (incongruent). We found that incongruent targets took longer to locate than congruent targets (Experiments 1, 2, and 3) and that this segmentation-congruency effect decreased when the number of search items was reduced (Experiment 2). Furthermore, an analysis of eye movements revealed that participants spent more time scrutinising the target before confirming its identity on incongruent trials than on congruent trials (Experiment 3). These findings suggest that the distractor context influences target segmentation and detection during visual search. Copyright © 2014 Elsevier B.V. All rights reserved.

Natural Language Search Interfaces: Health Data Needs Single-Field Variable Search

Science.gov (United States)

Smith, Sam; Sufi, Shoaib; Goble, Carole; Buchan, Iain

2016-01-01

Background Data discovery, particularly the discovery of key variables and their inter-relationships, is key to secondary data analysis, and in-turn, the evolving field of data science. Interface designers have presumed that their users are domain experts, and so they have provided complex interfaces to support these “experts.” Such interfaces hark back to a time when searches needed to be accurate first time as there was a high computational cost associated with each search. Our work is part of a governmental research initiative between the medical and social research funding bodies to improve the use of social data in medical research. Objective The cross-disciplinary nature of data science can make no assumptions regarding the domain expertise of a particular scientist, whose interests may intersect multiple domains. Here we consider the common requirement for scientists to seek archived data for secondary analysis. This has more in common with search needs of the “Google generation” than with their single-domain, single-tool forebears. Our study compares a Google-like interface with traditional ways of searching for noncomplex health data in a data archive. Methods Two user interfaces are evaluated for the same set of tasks in extracting data from surveys stored in the UK Data Archive (UKDA). One interface, Web search, is “Google-like,” enabling users to browse, search for, and view metadata about study variables, whereas the other, traditional search, has standard multioption user interface. Results Using a comprehensive set of tasks with 20 volunteers, we found that the Web search interface met data discovery needs and expectations better than the traditional search. A task × interface repeated measures analysis showed a main effect indicating that answers found through the Web search interface were more likely to be correct (F 1,19=37.3, Peffect of task (F 3,57=6.3, Pinterface (F 1,19=18.0, Peffect of task (F 2,38=4.1, P=.025, Greenhouse

SSRscanner: a program for reporting distribution and exact location of simple sequence repeats.

Science.gov (United States)

Anwar, Tamanna; Khan, Asad U

2006-02-20

Simple sequence repeats (SSRs) have become important molecular markers for a broad range of applications, such as genome mapping and characterization, phenotype mapping, marker assisted selection of crop plants and a range of molecular ecology and diversity studies. These repeated DNA sequences are found in both prokaryotes and eukaryotes. They are distributed almost at random throughout the genome, ranging from mononucleotide to trinucleotide repeats. They are also found at longer lengths (> 6 repeating units) of tracts. Most of the computer programs that find SSRs do not report its exact position. A computer program SSRscanner was written to find out distribution, frequency and exact location of each SSR in the genome. SSRscanner is user friendly. It can search repeats of any length and produce outputs with their exact position on chromosome and their frequency of occurrence in the sequence. This program has been written in PERL and is freely available for non-commercial users by request from the authors. Please contact the authors by E-mail: huzzi99@hotmail.com.

Search for missing schizophrenia genes will require a new ...

Indian Academy of Sciences (India)

2013-08-06

Aug 6, 2013 ... causal gene(s)?. The successful search for disease genes is based on a ..... 2010 Mobile interspersed repeats are major structural variants in ... Petronis A., Paterson A. D. and Kennedy J. L. 1999 Schizophrenia: an epigenetic ...

Murchison Widefield Array Limits on Radio Emission from ANTARES Neutrino Events

NARCIS (Netherlands)

Croft, S.; van Haren, H.; MWA Collaboration; Antares Collaboration; TAROT Collaboration; ROTSE Collaboration

2016-01-01

We present a search, using the Murchison Widefield Array (MWA), for electromagnetic (EM) counterparts to twocandidate high-energy neutrino events detected by the ANTARES neutrino telescope in 2013 November and 2014March. These events were selected by ANTARES because they are consistent, within 0°.4,

Element sharing in interleaved antenna arrays

CSIR Research Space (South Africa)

Du Plessis, WP

2012-03-01

Full Text Available , there is a large variation in the results for a small number of shared elements which reduces as the number of times the GA is run increases. Taken together, these points suggest that the GA implemented here does not provide consistently good results when... levels in linear arrays,? IEEE Antennas Wirel. Propag. Lett., vol. 9, pp. 771?774, 2010. [11] D. E. Goldberg, Genetic algorithms in search, optimization, and machine learning. Addison-Wesley, 1989. [12] T. Blickle and L. Thiele, ?A comparison...

Phased arrays: A strategy to lower the energy threshold for neutrinos

Directory of Open Access Journals (Sweden)

Wissel Stephanie

2017-01-01

Full Text Available In-ice radio arrays are optimized for detecting the highest energy, cosmogenic neutrinos expected to be produced though cosmic ray interactions with background photons. However, there are two expected populations of high energy neutrinos: the astrophysical flux observed by IceCube (~1 PeV and the cosmogenic flux (~ 1017 eV or 100 PeV. Typical radio arrays employ a noise-riding trigger, which limits their minimum energy threshold based on the background noise temperature of the ice. Phased radio arrays could lower the energy threshold by combining the signals from several channels before triggering, thereby improving the signal-to-noise at the trigger level. Reducing the energy threshold would allow radio experiments to more efficiently overlap with optical Cherenkov neutrino telescopes as well as for more efficient searches for cosmogenic neutrinos. We discuss the proposed technique and prototypical phased arrays deployed in an anechoic chamber and at Greenland’s Summit Station.

Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes.

Science.gov (United States)

Al-Attar, Sinan; Westra, Edze R; van der Oost, John; Brouns, Stan J J

2011-04-01

Many prokaryotes contain the recently discovered defense system against mobile genetic elements. This defense system contains a unique type of repetitive DNA stretches, termed Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs). CRISPRs consist of identical repeated DNA sequences (repeats), interspaced by highly variable sequences referred to as spacers. The spacers originate from either phages or plasmids and comprise the prokaryotes' 'immunological memory'. CRISPR-associated (cas) genes encode conserved proteins that together with CRISPRs make-up the CRISPR/Cas system, responsible for defending the prokaryotic cell against invaders. CRISPR-mediated resistance has been proposed to involve three stages: (i) CRISPR-Adaptation, the invader DNA is encountered by the CRISPR/Cas machinery and an invader-derived short DNA fragment is incorporated in the CRISPR array. (ii) CRISPR-Expression, the CRISPR array is transcribed and the transcript is processed by Cas proteins. (iii) CRISPR-Interference, the invaders' nucleic acid is recognized by complementarity to the crRNA and neutralized. An application of the CRISPR/Cas system is the immunization of industry-relevant prokaryotes (or eukaryotes) against mobile-genetic invasion. In addition, the high variability of the CRISPR spacer content can be exploited for phylogenetic and evolutionary studies. Despite impressive progress during the last couple of years, the elucidation of several fundamental details will be a major challenge in future research.

Search for high energy skimming neutrinos at a surface detector array

International Nuclear Information System (INIS)

Vo Van Thuan; Hoang Van Khanh; Pham Ngoc Diep

2010-01-01

In the present study we propose a new method for detection of high energy cosmological muon neutrinos by transition radiations at a medium interface. The emerging electro-magnetic radiations induced by earth-skimming heavy charged leptons are able to trigger a few of aligned neighboring local water Cherenkov stations at a surface detector array similar to the Pierre Auger Observatory. The estimation applied to the model of Gamma Ray Burst induced neutrino fluxes and the spherical earth surface shows a competitive rate of muon neutrino events in the energy range below the GZK cut-off. (author)

Long-term priming of visual search prevails against the passage of time and counteracting instructions

NARCIS (Netherlands)

Kruijne, W.; Meeter, M.

2016-01-01

Studies on intertrial priming have shown that in visual search experiments, the preceding trial automatically affects search performance: facilitating it when the target features repeat and giving rise to switch costs when they change-so-called (short-term) intertrial priming. These effects also

Active-Source Seismic Tomography at Bradys Geothermal Field, Nevada, with Dense Nodal and Fiber-Optic Seismic Arrays

Science.gov (United States)

Thurber, C. H.; Parker, L.; Li, P.; Fratta, D.; Zeng, X.; Feigl, K. L.; Ak, E.; Lord, N.

2017-12-01

We deployed a dense seismic array to image the shallow structure in the injection area of the Brady Hot Springs geothermal site in Nevada. The array was composed of 238 5 Hz, three-component nodal instruments and 8,700 m of distributed acoustic sensing (DAS) fiber-optic cable installed in surface trenches plus about 400 m installed in a borehole. The geophone array had about 60 m instrument spacing in the target zone, whereas DAS channel separations were about 1 m. The acquisition systems provided 15 days of continuous records including active source and ambient noise signals. A large vibroseis truck (T-Rex) was operated at 196 locations, exciting a swept-frequency signal from 5 to 80 Hz over 20 seconds using three vibration modes. Sweeps were repeated up to four times during different modes of geothermal plant operation: normal operation, shut-down, high and oscillatory injection and production, and normal operation again. The cross-correlation method was utilized to remove the sweep signal from the geophone records. The first P arrivals were automatically picked from the cross-correlation functions using a combination of methods, and the travel times were used to invert for the 3D P-wave velocity structure. Models with 100 m and 50 m horizontal node spacing were obtained, with vertical node spacing of 10 to 50 m. The travel time data were fit to about 30 ms, close to our estimated picking uncertainty. We will present our 3D Vp model and the result of our search for measurable temporal changes, along with preliminary results for a 3D Vs model. The work presented herein was funded in part by the Office of Energy Efficiency and Renewable Energy (EERE), U.S. Department of Energy, under Award Number DE-EE0006760.

Negative emotional stimuli reduce contextual cueing but not response times in inefficient search.

Science.gov (United States)

Kunar, Melina A; Watson, Derrick G; Cole, Louise; Cox, Angeline

2014-02-01

In visual search, previous work has shown that negative stimuli narrow the focus of attention and speed reaction times (RTs). This paper investigates these two effects by first asking whether negative emotional stimuli narrow the focus of attention to reduce the learning of a display context in a contextual cueing task and, second, whether exposure to negative stimuli also reduces RTs in inefficient search tasks. In Experiment 1, participants viewed either negative or neutral images (faces or scenes) prior to a contextual cueing task. In a typical contextual cueing experiment, RTs are reduced if displays are repeated across the experiment compared with novel displays that are not repeated. The results showed that a smaller contextual cueing effect was obtained after participants viewed negative stimuli than when they viewed neutral stimuli. However, in contrast to previous work, overall search RTs were not faster after viewing negative stimuli (Experiments 2 to 4). The findings are discussed in terms of the impact of emotional content on visual processing and the ability to use scene context to help facilitate search.

Nowcasting Unemployment Rates with Google Searches: Evidence from the Visegrad Group Countries

Science.gov (United States)

Pavlicek, Jaroslav; Kristoufek, Ladislav

2015-01-01

The online activity of Internet users has repeatedly been shown to provide a rich information set for various research fields. We focus on job-related searches on Google and their possible usefulness in the region of the Visegrad Group - the Czech Republic, Hungary, Poland and Slovakia. Even for rather small economies, the online searches of inhabitants can be successfully utilized for macroeconomic predictions. Specifically, we study unemployment rates and their interconnection with job-related searches. We show that Google searches enhance nowcasting models of unemployment rates for the Czech Republic and Hungary whereas for Poland and Slovakia, the results are mixed. PMID:26001083

Fabrication of three-dimensional ordered nanodot array structures by a thermal dewetting method

International Nuclear Information System (INIS)

Li Zhenxing; Yoshino, Masahiko; Yamanaka, Akinori

2012-01-01

A new fabrication method for three-dimensional nanodot arrays with low cost and high throughput is developed in this paper. In this process, firstly a 2D nanodot array is fabricated by combination of top-down and bottom-up approaches. A nanoplastic forming technique is utilized as the top-down approach to fabricate a groove grid pattern on an Au layer deposited on a substrate, and self-organization by thermal dewetting is employed as the bottom-up approach. On the first-layer nanodot array, SiO 2 is deposited as a spacer layer. Au is then deposited on the spacer layer and thermal dewetting is conducted to fabricate a second-layer nanodot array. The effective parameters influencing dot formation on the second layer, including Au layer thickness and SiO 2 layer thickness, are studied. It is demonstrated that a 3D nanodot array of good vertical alignment is obtained by repeating the SiO 2 deposition, Au deposition and thermal dewetting. The mechanism of the dot agglomeration process is studied based on geometrical models. The effects of the spacer layer thickness and Au layer thickness on the morphology and alignment of the second-layer dots are discussed. (paper)

A time-of-flight array for 1 to 2 GeV/c particles

International Nuclear Information System (INIS)

Sum, V.; Berdoz, A.R.; Davis, C.A.

1992-09-01

A time-of-flight detector array has been developed for an experiment searching for the strangeness -2 H-particle. The array consists of 40 logs of plastic scintillator with dimensions 2.00 x 0.085 x 0.050 m 3 . The photomultiplier tubes are coupled to the scintillators without the use of light guides, and the mounting of the bars is designed for easy adjustment and servicing. The average intrinsic time resolution was found to be 110 ps σ. 8 refs., 9 figs., 1 tab

A time-of-flight array for 1 to 2 GeV/c particles

Energy Technology Data Exchange (ETDEWEB)

Sum, V; Berdoz, A R; Davis, C A [Manitoba Univ., Winnipeg, MB (Canada). Dept. of Physics; and others

1992-09-01

A time-of-flight detector array has been developed for an experiment searching for the strangeness -2 H-particle. The array consists of 40 logs of plastic scintillator with dimensions 2.00 x 0.085 x 0.050 m{sup 3}. The photomultiplier tubes are coupled to the scintillators without the use of light guides, and the mounting of the bars is designed for easy adjustment and servicing. The average intrinsic time resolution was found to be 110 ps {sigma}. 8 refs., 9 figs., 1 tab.

Functionalized polypyrrole nanotube arrays as electrochemical biosensor for the determination of copper ions

International Nuclear Information System (INIS)

Lin Meng; Hu Xiaoke; Ma Zhaohu; Chen Lingxin

2012-01-01

Highlights: ► PPy nanotube arrays were electropolymerized using ZnO nanowire arrays as templates. ► PPy nanotube arrays were anchored onto ITO glass without any chemical linker. ► Using SWV, the biosensor was found to be highly sensitive and selective to Cu 2+ . ► The biosensor was successfully applied for the determination of Cu 2+ in drinking water. - Abstract: A novel electrochemical biosensor based on functionalized polypyrrole (PPy) nanotube arrays modified with a tripeptide (Gly-Gly-His) proved to be highly effective for electrochemical analysis of copper ions (Cu 2+ ). The vertically oriented PPy nanotube arrays were electropolymerized by using modified zinc oxide (ZnO) nanowire arrays as templates which were electrodeposited on indium–tin oxide (ITO) coated glass substrates. The electrodes were functionalized by appending pyrrole-α-carboxylic acid onto the surface of polypyrrole nanotube arrays by electrochemical polymerization. The carboxylic groups of the polymer were covalently coupled with the amine groups of the tripeptide, and its structural features were confirmed by attenuated total reflection infrared (ATR-IR) spectroscopy. The tripeptide modified PPy nanotube arrays electrode was used for the electrochemical analysis of various trace copper ions by square wave voltammetry. The electrode was found to be highly sensitive and selective to Cu 2+ in the range of 0.1–30 μM. Furthermore, the developed biosensor exhibited a high stability and reproducibility, despite the repeated use of the biosensor electrode.

Design of UAV-Embedded Microphone Array System for Sound Source Localization in Outdoor Environments

Directory of Open Access Journals (Sweden)

Kotaro Hoshiba

2017-11-01

Full Text Available In search and rescue activities, unmanned aerial vehicles (UAV should exploit sound information to compensate for poor visual information. This paper describes the design and implementation of a UAV-embedded microphone array system for sound source localization in outdoor environments. Four critical development problems included water-resistance of the microphone array, efficiency in assembling, reliability of wireless communication, and sufficiency of visualization tools for operators. To solve these problems, we developed a spherical microphone array system (SMAS consisting of a microphone array, a stable wireless network communication system, and intuitive visualization tools. The performance of SMAS was evaluated with simulated data and a demonstration in the field. Results confirmed that the SMAS provides highly accurate localization, water resistance, prompt assembly, stable wireless communication, and intuitive information for observers and operators.

Design of UAV-Embedded Microphone Array System for Sound Source Localization in Outdoor Environments.

Science.gov (United States)

Hoshiba, Kotaro; Washizaki, Kai; Wakabayashi, Mizuho; Ishiki, Takahiro; Kumon, Makoto; Bando, Yoshiaki; Gabriel, Daniel; Nakadai, Kazuhiro; Okuno, Hiroshi G

2017-11-03

In search and rescue activities, unmanned aerial vehicles (UAV) should exploit sound information to compensate for poor visual information. This paper describes the design and implementation of a UAV-embedded microphone array system for sound source localization in outdoor environments. Four critical development problems included water-resistance of the microphone array, efficiency in assembling, reliability of wireless communication, and sufficiency of visualization tools for operators. To solve these problems, we developed a spherical microphone array system (SMAS) consisting of a microphone array, a stable wireless network communication system, and intuitive visualization tools. The performance of SMAS was evaluated with simulated data and a demonstration in the field. Results confirmed that the SMAS provides highly accurate localization, water resistance, prompt assembly, stable wireless communication, and intuitive information for observers and operators.

Large-Aperture Membrane Active Phased-Array Antennas

Science.gov (United States)

Karasik, Boris; McGrath, William; Leduc, Henry

2009-01-01

Large-aperture phased-array microwave antennas supported by membranes are being developed for use in spaceborne interferometric synthetic aperture radar systems. There may also be terrestrial uses for such antennas supported on stationary membranes, large balloons, and blimps. These antennas are expected to have areal mass densities of about 2 kg/sq m, satisfying a need for lightweight alternatives to conventional rigid phased-array antennas, which have typical areal mass densities between 8 and 15 kg/sq m. The differences in areal mass densities translate to substantial differences in total mass in contemplated applications involving aperture areas as large as 400 sq m. A membrane phased-array antenna includes patch antenna elements in a repeating pattern. All previously reported membrane antennas were passive antennas; this is the first active membrane antenna that includes transmitting/receiving (T/R) electronic circuits as integral parts. Other integral parts of the antenna include a network of radio-frequency (RF) feed lines (more specifically, a corporate feed network) and of bias and control lines, all in the form of flexible copper strip conductors on flexible polymeric membranes. Each unit cell of a prototype antenna (see Figure 1) contains a patch antenna element and a compact T/R module that is compatible with flexible membrane circuitry. There are two membrane layers separated by a 12.7-mm air gap. Each membrane layer is made from a commercially available flexible circuit material that, as supplied, comprises a 127-micron-thick polyimide dielectric layer clad on both sides with 17.5-micron-thick copper layers. The copper layers are patterned into RF, bias, and control conductors. The T/R module is located on the back side of the ground plane and is RF-coupled to the patch element via a slot. The T/R module is a hybrid multilayer module assembled and packaged independently and attached to the membrane array. At the time of reporting the information for

Gecko-Inspired Electrospun Flexible Fiber Arrays for Adhesion

Science.gov (United States)

Najem, Johnny F.

The ability of geckos to adhere to vertical solid surfaces comes from their remarkable feet with millions of projections terminating in nanometer spatulae. We present a simple yet robust method for fabricating directionally sensitive dry adhesives. By using electrospun nylon 6 nanofiber arrays, we create gecko-inspired dry adhesives, that are electrically insulating, and that show shear adhesion strength of 27 N/cm2 on a glass slide. This measured value is 270% that reported of gecko feet and 97-fold above normal adhesion strength of the same arrays. The data indicate a strong shear binding-on and easy normal lifting-off. This anisotropic strength distribution is attributed to an enhanced shear adhesion strength with decreasing fiber diameter (d) and an optimum performance of nanofiber arrays in the shear direction over a specific range of thicknesses. With use of electrospinning, we report the fabrication of nylon 6 nanofiber arrays that show a friction coefficient (mu) of 11.5. These arrays possess significant shear adhesion strength and low normal adhesion strength. Increasing the applied normal load considerably enhances the shear adhesion strength and mu, irrespective of d and fiber arrays thickness (T). Fiber bending stiffness and fiber surface roughness are considerably decreased with diminishing d while fiber packing density is noticeably increased. These enhancements are proposed to considerably upsurge the shear adhesion strength between nanofiber arrays and a glass slide. The latter upsurge is mainly attributed to a sizeable proliferation in van der Waals (vdW) forces. These nanofiber arrays can be alternatively bound-on and lifted-off over a glass slide with a trivial decrease in the initial mu and adhesion strength. By using selective coating technique, we have also created hierarchical structures having closely packed nanofibers with d of 50 nm. We determine the effects of applied normal load, fiber surface roughness, loading angle, d, T, and repeated

The D4Z4 macrosatellite repeat acts as a CTCF and A-type lamins-dependent insulator in facio-scapulo-humeral dystrophy.

Directory of Open Access Journals (Sweden)

Alexandre Ottaviani

2009-02-01

Full Text Available Both genetic and epigenetic alterations contribute to Facio-Scapulo-Humeral Dystrophy (FSHD, which is linked to the shortening of the array of D4Z4 repeats at the 4q35 locus. The consequence of this rearrangement remains enigmatic, but deletion of this 3.3-kb macrosatellite element might affect the expression of the FSHD-associated gene(s through position effect mechanisms. We investigated this hypothesis by creating a large collection of constructs carrying 1 to >11 D4Z4 repeats integrated into the human genome, either at random sites or proximal to a telomere, mimicking thereby the organization of the 4q35 locus. We show that D4Z4 acts as an insulator that interferes with enhancer-promoter communication and protects transgenes from position effect. This last property depends on both CTCF and A-type Lamins. We further demonstrate that both anti-silencing activity of D4Z4 and CTCF binding are lost upon multimerization of the repeat in cells from FSHD patients compared to control myoblasts from healthy individuals, suggesting that FSHD corresponds to a gain-of-function of CTCF at the residual D4Z4 repeats. We propose that contraction of the D4Z4 array contributes to FSHD physio-pathology by acting as a CTCF-dependent insulator in patients.

The role of memory for visual search in scenes.

Science.gov (United States)

Le-Hoa Võ, Melissa; Wolfe, Jeremy M

2015-03-01

Many daily activities involve looking for something. The ease with which these searches are performed often allows one to forget that searching represents complex interactions between visual attention and memory. Although a clear understanding exists of how search efficiency will be influenced by visual features of targets and their surrounding distractors or by the number of items in the display, the role of memory in search is less well understood. Contextual cueing studies have shown that implicit memory for repeated item configurations can facilitate search in artificial displays. When searching more naturalistic environments, other forms of memory come into play. For instance, semantic memory provides useful information about which objects are typically found where within a scene, and episodic scene memory provides information about where a particular object was seen the last time a particular scene was viewed. In this paper, we will review work on these topics, with special emphasis on the role of memory in guiding search in organized, real-world scenes. © 2015 New York Academy of Sciences.

Cognitive behavioural therapy halves the risk of repeated suicide attempts

DEFF Research Database (Denmark)

Gøtzsche, Peter C; Gøtzsche, Pernille K

2017-01-01

is excluded, the risk ratio becomes 0.61 (0.46-0.80) and the heterogeneity in the results disappears (I(2 )= 0%). Conclusions Cognitive behavioural therapy reduces not only repeated self-harm but also repeated suicide attempts. It should be the preferred treatment for all patients with depression.......Objective To study whether cognitive behavioural therapy decreases suicide attempts in people with previous suicide attempts. Design Systematic review and meta-analysis. Setting Randomised trials that compare cognitive behavioural therapy with treatment as usual. Participants Patients who had...... engaged in any type of suicide attempt in the six months prior to trial entry resulting in presentation to clinical services. Main outcome measure Suicide attempt. Results We included ten trials, eight from Cochrane reviews and two from our updated searches (1241 patients, 219 of whom had at least one new...

Inclusion Compound Based Approach to Forming Arrays of Artificial Dipolar Molecular Rotors: A Search for Optimal Rotor Structures

Czech Academy of Sciences Publication Activity Database

Kobr, L.; Zhao, K.; Shen, X.; Shoemaker, R. K.; Rogers, C. T.; Michl, Josef

2013-01-01

Roč. 25, č. 3 (2013), s. 443-448 ISSN 0935-9648 EU Projects: European Commission(XE) 227756 - DIPOLAR ROTOR ARRAY Grant - others:NSF(US) CHE 0848663 Institutional support: RVO:61388963 Keywords : inclusion compounds * molecular rotors * ferroelectricity * two-dimensional arrays Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 15.409, year: 2013

What time-lag for a retraction search on PubMed?

Science.gov (United States)

Decullier, Evelyne; Huot, Laure; Maisonneuve, Hervé

2014-06-25

To investigate fraud and errors, scientists have studied cohorts of retraction notices. These researches have been performed using a PubMed search on publication type "retraction of publication" which retrieves the notices of the retractions. We assessed the stability of the indexation of retraction notices over a 15-month period and what was the time-lag to get stability. A search on notices of retraction issued in 2008 was repeated every 3 months during 15 months from February 2011. The first search resulted in 237 notices of retraction. Throughout the study period, 14 discrepancies with the initial search were observed (6%). We found that the number of retraction notices became stable 35 months after the retraction. The time-lag observed in this study has to be taken into account when performing a PubMed search.

Variation in number of hits for complex searches in Google Scholar

Directory of Open Access Journals (Sweden)

Wichor Matthijs Bramer, BSc

2016-11-01

Full Text Available Objective: Google Scholar is often used to search for medical literature. Numbers of results reported by Google Scholar outperform the numbers reported by traditional databases. How reliable are these numbers? Why are often not all available 1,000 references shown? Methods: For several complex search strategies used in systematic review projects, the number of citations and the total number of versions were calculated. Several search strategies were followed over a two-year period, registering fluctuations in reported search results. Results: Changes in numbers of reported search results varied enormously between search strategies and dates. Theories for calculations of the reported and shown number of hits were not proved. Conclusions: The number of hits reported in Google Scholar is an unreliable measure. Therefore, its repeatability is problematic, at least when equal results are needed.

Long-Term Priming of Visual Search Prevails against the Passage of Time and Counteracting Instructions

Science.gov (United States)

Kruijne, Wouter; Meeter, Martijn

2016-01-01

Studies on "intertrial priming" have shown that in visual search experiments, the preceding trial automatically affects search performance: facilitating it when the target features repeat and giving rise to switch costs when they change--so-called (short-term) intertrial priming. These effects also occur at longer time scales: When 1 of…

Peptide modified ZnO nanoparticles as gas sensors array for volatile organic compounds (VOCs)

Science.gov (United States)

Mascini, Marcello; Gaggiotti, Sara; Della Pelle, Flavio; Di Natale, Corrado; Qakala, Sinazo; Iwuoha, Emmanuel; Pittia, Paola; Compagnone, Dario

2018-04-01

In this work a peptide based gas sensor array based of ZnO nanoparticles (ZnONPs) has been realized. Four different pentapeptides molecularly modelled for alcohols and esters having cysteine as a common spacer have been immobilized onto ZnONPs. ZnONPs have been morphologically and spectroscopically characterized. Modified nanoparticles have been then deposited onto quartz crystal microbalances (QCMs) and used as gas sensors with nitrogen as carrier gas. Analysis of the pure compounds modelled demonstrated a nice fitting of modelling with real data. The peptide based ZnONPs had very low sensitivity to water, compared to previously studied AuNPs peptide based gas sensors allowing the use of the array on samples with high water content. Real samples of fruit juices have been assayed; stability of the signal, good repeatability and discrimination ability of the array was achieved.

Peptide Modified ZnO Nanoparticles as Gas Sensors Array for Volatile Organic Compounds (VOCs

Directory of Open Access Journals (Sweden)

Marcello Mascini

2018-04-01

Full Text Available In this work a peptide based gas sensor array based of ZnO nanoparticles (ZnONPs has been realized. Four different pentapeptides molecularly modeled for alcohols and esters having cysteine as a common spacer have been immobilized onto ZnONPs. ZnONPs have been morphologically and spectroscopically characterized. Modified nanoparticles have been then deposited onto quartz crystal microbalances (QCMs and used as gas sensors with nitrogen as carrier gas. Analysis of the pure compounds modeled demonstrated a nice fitting of modeling with real data. The peptide based ZnONPs had very low sensitivity to water, compared to previously studied AuNPs peptide based gas sensors allowing the use of the array on samples with high water content. Real samples of fruit juices have been assayed; stability of the signal, good repeatability, and discrimination ability of the array was achieved.

Adaptation to a simulated central scotoma during visual search training.

Science.gov (United States)

Walsh, David V; Liu, Lei

2014-03-01

Patients with a central scotoma usually use a preferred retinal locus (PRL) consistently in daily activities. The selection process and time course of the PRL development are not well understood. We used a gaze-contingent display to simulate an isotropic central scotoma in normal subjects while they were practicing a difficult visual search task. As compared to foveal search, initial exposure to the simulated scotoma resulted in prolonged search reaction time, many more fixations and unorganized eye movements during search. By the end of a 1782-trial training with the simulated scotoma, the search performance improved to within 25% of normal foveal search. Accompanying the performance improvement, there were also fewer fixations, fewer repeated fixations in the same area of the search stimulus and a clear tendency of using one area near the border of the scotoma to identify the search target. The results were discussed in relation to natural development of PRL in central scotoma patients and potential visual training protocols to facilitate PRL development. Published by Elsevier Ltd.

A Palladium-Tin Modified Microband Electrode Array for Nitrate Determination

Directory of Open Access Journals (Sweden)

Yexiang Fu

2015-09-01

Full Text Available A microband electrode array modified with palladium-tin bimetallic composite has been developed for nitrate determination. The microband electrode array was fabricated by Micro Electro-Mechanical System (MEMS technique. Palladium and tin were electrodeposited successively on the electrode, forming a double-layer structure. The effect of the Pd-Sn composite was investigated and its enhancement of catalytic activity and lifetime was revealed. The Pd-Sn modified electrode showed good linearity (R2 = 0.998 from 1 mg/L to 20 mg/L for nitrate determination with a sensitivity of 398 μA/(mg∙L−1∙cm2. The electrode exhibited a satisfying analytical performance after 60 days of storage, indicating a long lifetime. Good repeatability was also displayed by the Pd-Sn modified electrodes. The results provided an option for nitrate determination in water.

The standardized EEG electrode array of the IFCN.

Science.gov (United States)

Seeck, Margitta; Koessler, Laurent; Bast, Thomas; Leijten, Frans; Michel, Christoph; Baumgartner, Christoph; He, Bin; Beniczky, Sándor

2017-10-01

Standardized EEG electrode positions are essential for both clinical applications and research. The aim of this guideline is to update and expand the unifying nomenclature and standardized positioning for EEG scalp electrodes. Electrode positions were based on 20% and 10% of standardized measurements from anatomical landmarks on the skull. However, standard recordings do not cover the anterior and basal temporal lobes, which is the most frequent source of epileptogenic activity. Here, we propose a basic array of 25 electrodes including the inferior temporal chain, which should be used for all standard clinical recordings. The nomenclature in the basic array is consistent with the 10-10-system. High-density scalp EEG arrays (64-256 electrodes) allow source imaging with even sub-lobar precision. This supplementary exam should be requested whenever necessary, e.g. search for epileptogenic activity in negative standard EEG or for presurgical evaluation. In the near future, nomenclature for high density electrodes arrays beyond the 10-10 system needs to be defined, to allow comparison and standardized recordings across centers. Contrary to the established belief that smaller heads needs less electrodes, in young children at least as many electrodes as in adults should be applied due to smaller skull thickness and the risk of spatial aliasing. Copyright © 2017 International Federation of Clinical Neurophysiology. Published by Elsevier B.V. All rights reserved.

Neural basis of feature-based contextual effects on visual search behavior

Directory of Open Access Journals (Sweden)

Kelly eShen

2012-01-01

Full Text Available Searching for a visual object is known to be adaptable to context, and it is thought to result from the selection of neural representations distributed on a visual salience map, wherein stimulus-driven and goal-directed signals are combined. Here we investigated the neural basis of this adaptability by recording superior colliculus (SC neurons while three female rhesus monkeys (Macaca mulatta searched with saccadic eye movements for a target presented in an array of visual stimuli whose feature composition varied from trial to trial. We found that sensory-motor activity associated with distracters was enhanced or suppressed depending on the search array composition and that it corresponded to the monkey's search strategy, as assessed by the distribution of the occasional errant saccades. This feature-related modulation occurred independently from the saccade goal and facilitated the process of saccade target selection. We also observed feature-related enhancement in the activity associated with distracters that had been the search target during the previous session. Consistent with recurrent processing, both feature-related neuronal modulations occurred more than 60 ms after the onset of the visually evoked responses, and their near coincidence with the time of saccade target selection suggests that they are integral to this process. These results suggest that SC neuronal activity is shaped by the visual context as dictated by both stimulus-driven and goal-directed signals. Given the close proximity of the SC to the motor circuit, our findings suggest a direct link between perception and action and no need for distinct salience and motor maps.

Direction-of-Arrival Estimation with Coarray ESPRIT for Coprime Array.

Science.gov (United States)

Zhou, Chengwei; Zhou, Jinfang

2017-08-03

A coprime array is capable of achieving more degrees-of-freedom for direction-of-arrival (DOA) estimation than a uniform linear array when utilizing the same number of sensors. However, existing algorithms exploiting coprime array usually adopt predefined spatial sampling grids for optimization problem design or include spectrum peak search process for DOA estimation, resulting in the contradiction between estimation performance and computational complexity. To address this problem, we introduce the Estimation of Signal Parameters via Rotational Invariance Techniques (ESPRIT) to the coprime coarray domain, and propose a novel coarray ESPRIT-based DOA estimation algorithm to efficiently retrieve the off-grid DOAs. Specifically, the coprime coarray statistics are derived according to the received signals from a coprime array to ensure the degrees-of-freedom (DOF) superiority, where a pair of shift invariant uniform linear subarrays is extracted. The rotational invariance of the signal subspaces corresponding to the underlying subarrays is then investigated based on the coprime coarray covariance matrix, and the incorporation of ESPRIT in the coarray domain makes it feasible to formulate the closed-form solution for DOA estimation. Theoretical analyses and simulation results verify the efficiency and the effectiveness of the proposed DOA estimation algorithm.

Design of UAV-Embedded Microphone Array System for Sound Source Localization in Outdoor Environments †

Science.gov (United States)

Hoshiba, Kotaro; Washizaki, Kai; Wakabayashi, Mizuho; Ishiki, Takahiro; Bando, Yoshiaki; Gabriel, Daniel; Nakadai, Kazuhiro; Okuno, Hiroshi G.

2017-01-01

In search and rescue activities, unmanned aerial vehicles (UAV) should exploit sound information to compensate for poor visual information. This paper describes the design and implementation of a UAV-embedded microphone array system for sound source localization in outdoor environments. Four critical development problems included water-resistance of the microphone array, efficiency in assembling, reliability of wireless communication, and sufficiency of visualization tools for operators. To solve these problems, we developed a spherical microphone array system (SMAS) consisting of a microphone array, a stable wireless network communication system, and intuitive visualization tools. The performance of SMAS was evaluated with simulated data and a demonstration in the field. Results confirmed that the SMAS provides highly accurate localization, water resistance, prompt assembly, stable wireless communication, and intuitive information for observers and operators. PMID:29099790

The long and the short of priming in visual search

NARCIS (Netherlands)

Kruijne, W.; Meeter, M.

2015-01-01

Memory affects visual search, as is particularly evident from findings that when target features are repeated from one trial to the next, selection is faster. Two views have emerged on the nature of the memory representations and mechanisms that cause these intertrial priming effects: independent

From Foreground to Background: How Task-Neutral Context Influences Contextual Cueing of Visual Search.

Science.gov (United States)

Zang, Xuelian; Geyer, Thomas; Assumpção, Leonardo; Müller, Hermann J; Shi, Zhuanghua

2016-01-01

Selective attention determines the effectiveness of implicit contextual learning (e.g., Jiang and Leung, 2005). Visual foreground-background segmentation, on the other hand, is a key process in the guidance of attention (Wolfe, 2003). In the present study, we examined the impact of foreground-background segmentation on contextual cueing of visual search in three experiments. A visual search display, consisting of distractor 'L's and a target 'T', was overlaid on a task-neutral cuboid on the same depth plane (Experiment 1), on stereoscopically separated depth planes (Experiment 2), or spread over the entire display on the same depth plane (Experiment 3). Half of the search displays contained repeated target-distractor arrangements, whereas the other half was always newly generated. The task-neutral cuboid was constant during an initial training session, but was either rotated by 90° or entirely removed in the subsequent test sessions. We found that the gains resulting from repeated presentation of display arrangements during training (i.e., contextual-cueing effects) were diminished when the cuboid was changed or removed in Experiment 1, but remained intact in Experiments 2 and 3 when the cuboid was placed in a different depth plane, or when the items were randomly spread over the whole display but not on the edges of the cuboid. These findings suggest that foreground-background segmentation occurs prior to contextual learning, and only objects/arrangements that are grouped as foreground are learned over the course of repeated visual search.

P2-21: Searching for Multiple Targets Using the iPad

Directory of Open Access Journals (Sweden)

Ian Thornton

2012-10-01

Full Text Available Search for multiple targets is constrained by both retrospective (i.e., where you've been and prospective (i.e., where you're planning to go components of performance. Previous studies using the Multi-Item Localisation (MILO task have demonstrated that participants accurately remember and discount locations they have already visited and that they plan future actions up to 2 or 3 items ahead (Thornton & Horowitz, 2004 Perception & Psychophysics 66 38–50. A prominent feature of the MILO serial-reaction time (SRT function is a highly elevated, that is slowed, response, to T1 compared to T2 and all the other items. This “prospective gap” is typically between 600 ms and 1000 ms. Here we present three experiments that use the MILO iPad app to explore this “prospective gap”. In Experiment 1, we “shuffled” the position of future targets each time a response was made. This blocks planning and thus slows all responses to the level of first target, effectively eliminating the gap. In Experiment 2, participants responded to eight identical targets, removing the need to plan a specific sequence of actions. In this situation, absolute response time is greatly reduced and the T1–T2 gap shrinks to around 350 ms. In Experiment 3, participants repeated their search through the same array 10 times. Under these circumstances, the gap systematically reduced from 1300 ms on trial 1 to 300 ms on trial 10. Together, these results suggest that the previously observed prospective gap is a combination of set-up time for registering a new visual layout, response preparation, and sequence planning.

Design and characterization of a laterally mounted phased-array transducer breast-specific MRgHIFU device with integrated 11-channel receiver array.

Science.gov (United States)

Payne, A; Merrill, R; Minalga, E; Vyas, U; de Bever, J; Todd, N; Hadley, R; Dumont, E; Neumayer, L; Christensen, D; Roemer, R; Parker, D

2012-03-01

This work presents the design and preliminary evaluation of a new laterally mounted phased-array MRI-guided high-intensity focused ultrasound (MRgHIFU) system with an integrated 11-channel phased-array radio frequency (RF) coil intended for breast cancer treatment. The design goals for the system included the ability to treat the majority of tumor locations, to increase the MR image's signal-to-noise ratio (SNR) throughout the treatment volume and to provide adequate comfort for the patient. In order to treat the majority of the breast volume, the device was designed such that the treated breast is suspended in a 17-cm diameter treatment cylinder. A laterally shooting 1-MHz, 256-element phased-array ultrasound transducer with flexible positioning is mounted outside the treatment cylinder. This configuration achieves a reduced water volume to minimize RF coil loading effects, to position the coils closer to the breast for increased signal sensitivity, and to reduce the MR image noise associated with using water as the coupling fluid. This design uses an 11-channel phased-array RF coil that is placed on the outer surface of the cylinder surrounding the breast. Mechanical positioning of the transducer and electronic steering of the focal spot enable placement of the ultrasound focus at arbitrary locations throughout the suspended breast. The treatment platform allows the patient to lie prone in a face-down position. The system was tested for comfort with 18 normal volunteers and SNR capabilities in one normal volunteer and for heating accuracy and stability in homogeneous phantom and inhomogeneous ex vivo porcine tissue. There was a 61% increase in mean relative SNR achieved in a homogeneous phantom using the 11-channel RF coil when compared to using only a single-loop coil around the chest wall. The repeatability of the system's energy delivery in a single location was excellent, with less than 3% variability between repeated temperature measurements at the same

Compression dynamics of quasi-spherical wire arrays with different linear mass profiles

International Nuclear Information System (INIS)

Mitrofanov, K. N.; Aleksandrov, V. V.; Gritsuk, A. N.; Grabovski, E. V.; Frolov, I. N.; Laukhin, Ya. N.; Oleinik, G. M.; Ol’khovskaya, O. G.

2016-01-01

Results of experimental studies of the implosion of quasi-spherical wire (or metalized fiber) arrays are presented. The goal of the experiments was to achieve synchronous three-dimensional compression of the plasma produced in different regions of a quasi-spherical array into its geometrical center. To search for optimal synchronization conditions, quasi-spherical arrays with different initial profiles of the linear mass were used. The following dependences of the linear mass on the poloidal angle were used: m_l(θ) ∝ sin"–"1θ and m_l(θ) ∝ sin"–"2θ. The compression dynamics of such arrays was compared with that of quasi-spherical arrays without linear mass profiling, m_l(θ) = const. To verify the experimental data, the spatiotemporal dynamics of plasma compression in quasi-spherical arrays was studied using various diagnostics. The experiments on three-dimensional implosion of quasi-spherical arrays made it possible to study how the frozen-in magnetic field of the discharge current penetrates into the array. By measuring the magnetic field in the plasma of a quasi-spherical array, information is obtained on the processes of plasma production and formation of plasma flows from the wire/fiber regions with and without an additionally deposited mass. It is found that penetration of the magnetic flux depends on the initial linear mass profile m_l(θ) of the quasi-spherical array. From space-resolved spectral measurements and frame imaging of plasma X-ray emission, information is obtained on the dimensions and shape of the X-ray source formed during the implosion of a quasi-spherical array. The intensity of this source is estimated and compared with that of the Z-pinch formed during the implosion of a cylindrical array.

Focal plane array with modular pixel array components for scalability

Science.gov (United States)

Kay, Randolph R; Campbell, David V; Shinde, Subhash L; Rienstra, Jeffrey L; Serkland, Darwin K; Holmes, Michael L

2014-12-09

A modular, scalable focal plane array is provided as an array of integrated circuit dice, wherein each die includes a given amount of modular pixel array circuitry. The array of dice effectively multiplies the amount of modular pixel array circuitry to produce a larger pixel array without increasing die size. Desired pixel pitch across the enlarged pixel array is preserved by forming die stacks with each pixel array circuitry die stacked on a separate die that contains the corresponding signal processing circuitry. Techniques for die stack interconnections and die stack placement are implemented to ensure that the desired pixel pitch is preserved across the enlarged pixel array.

Two-Dimensional DOA Estimation Using Arbitrary Arrays for Massive MIMO Systems

Directory of Open Access Journals (Sweden)

Alban Doumtsop Lonkeng

2017-01-01

Full Text Available With the quick advancement of wireless communication networks, the need for massive multiple-input-multiple-output (MIMO to offer adequate network capacity has turned out to be apparent. As a portion of array signal processing, direction-of-arrival (DOA estimation is of indispensable significance to acquire directional data of sources and to empower the 3D beamforming. In this paper, the performance of DOA estimation for massive MIMO systems is analyzed and compared using a low-complexity algorithm. To be exact, the 2D Fourier domain line search (FDLS MUSIC algorithm is studied to mutually estimate elevation and azimuth angle, and arbitrary array geometry is utilized to represent massive MIMO systems. To avoid the computational burden in estimating the data covariance matrix and its eigenvalue decomposition (EVD due to the large-scale sensors involved in massive MIMO systems, the reduced-dimension data matrix is applied on the signals received by the array. The performance is examined and contrasted with the 2D MUSIC algorithm for different types of antenna configuration. Finally, the array resolution is selected to investigate the performance of elevation and azimuth estimation. The effectiveness and advantage of the proposed technique have been proven by detailed simulations for different types of MIMO array configuration.

Synergistic enhancement of cellulase pairs linked by consensus ankyrin repeats: Determination of the roles of spacing, orientation, and enzyme identity.

Science.gov (United States)

Cunha, Eva S; Hatem, Christine L; Barrick, Doug

2016-08-01

Biomass deconstruction to small simple sugars is a potential approach to biofuels production; however, the highly recalcitrant nature of biomass limits the economic viability of this approach. Thus, research on efficient biomass degradation is necessary to achieve large-scale production of biofuels. Enhancement of cellulolytic activity by increasing synergism between cellulase enzymes holds promise in achieving high-yield biofuels production. Here we have inserted cellulase pairs from extremophiles into hyperstable α-helical consensus ankyrin repeat domain scaffolds. Such chimeric constructs allowed us to optimize arrays of enzyme pairs against a variety of cellulolytic substrates. We found that endocellulolytic domains CelA (CA) and Cel12A (C12A) act synergistically in the context of ankyrin repeats, with both three and four repeat spacing. The extent of synergy differs for different substrates. Also, having C12A N-terminal to CA provides greater synergy than the reverse construct, especially against filter paper. In contrast, we do not see synergy for these enzymes in tandem with CelK (CK) catalytic domain, a larger exocellulase, demonstrating the importance of enzyme identity in synergistic enhancement. Furthermore, we found endocellulases CelD and CA with three repeat spacing to act synergistically against filter paper. Importantly, connecting CA and C12A with a disordered linker of similar contour length shows no synergistic enhancement, indicating that synergism results from connecting these domains with folded ankyrin repeats. These results show that ankyrin arrays can be used to vary spacing and orientation between enzymes, helping to design and optimize artificial cellulosomes, providing a novel architecture for synergistic enhancement of enzymatic cellulose degradation. Proteins 2016; 84:1043-1054. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Single-Molecule View of Small RNA-Guided Target Search and Recognition.

Science.gov (United States)

Globyte, Viktorija; Kim, Sung Hyun; Joo, Chirlmin

2018-05-20

Most everyday processes in life involve a necessity for an entity to locate its target. On a cellular level, many proteins have to find their target to perform their function. From gene-expression regulation to DNA repair to host defense, numerous nucleic acid-interacting proteins use distinct target search mechanisms. Several proteins achieve that with the help of short RNA strands known as guides. This review focuses on single-molecule advances studying the target search and recognition mechanism of Argonaute and CRISPR (clustered regularly interspaced short palindromic repeats) systems. We discuss different steps involved in search and recognition, from the initial complex prearrangement into the target-search competent state to the final proofreading steps. We focus on target search mechanisms that range from weak interactions, to one- and three-dimensional diffusion, to conformational proofreading. We compare the mechanisms of Argonaute and CRISPR with a well-studied target search system, RecA.

bicep2/ KECK ARRAY . IV. OPTICAL CHARACTERIZATION AND PERFORMANCE OF THE bicep2 AND KECK ARRAY EXPERIMENTS

Energy Technology Data Exchange (ETDEWEB)

Ade, P.A.R.; Aikin, R.W.; Barkats, D.; Benton, S.J.; Bischoff, C.A.; Bock, J.J.; Bradford, K.J.; Brevik, J.A.; Buder, I.; Bullock, E.; Dowell, C.D.; Duband, L.; Filippini, J.P.; Fliescher, S.; Golwala, S.R.; Halpern, M.; Hasselfield, M.; Hildebrandt, S.R.; Hilton, G.C.; Hui, H.; Irwin, K.D.

2015-06-18

bicep2/KECK ARRAY. IV. OPTICAL CHARACTERIZATION AND PERFORMANCE OF THE bicep2 AND KECK ARRAY EXPERIMENTS P. A. R. Ade1, R. W. Aikin2, D. Barkats3, S. J. Benton4, C. A. Bischoff5, J. J. Bock2,6, K. J. Bradford5, J. A. Brevik2, I. Buder5, E. Bullock7Show full author list Published 2015 June 18 • © 2015. The American Astronomical Society. All rights reserved. The Astrophysical Journal, Volume 806, Number 2 Article PDF Figures Tables References Citations 273 Total downloads Cited by 6 articles Turn on MathJax Share this article Get permission to re-use this article Article information Abstract bicep2 and the Keck Array are polarization-sensitive microwave telescopes that observe the cosmic microwave background (CMB) from the South Pole at degree angular scales in search of a signature of inflation imprinted as B-mode polarization in the CMB. bicep2 was deployed in late 2009, observed for three years until the end of 2012 at 150 GHz with 512 antenna-coupled transition edge sensor bolometers, and has reported a detection of B-mode polarization on degree angular scales. The Keck Array was first deployed in late 2010 and will observe through 2016 with five receivers at several frequencies (95, 150, and 220 GHz). bicep2 and the Keck Array share a common optical design and employ the field-proven bicep1 strategy of using small-aperture, cold, on-axis refractive optics, providing excellent control of systematics while maintaining a large field of view. This design allows for full characterization of far-field optical performance using microwave sources on the ground. Here we describe the optical design of both instruments and report a full characterization of the optical performance and beams of bicep2 and the Keck Array at 150 GHz.

Stretchable microelectrode array using room-temperature liquid alloy interconnects

International Nuclear Information System (INIS)

Wei, P; Ziaie, B; Taylor, R; Chung, C; Higgs, G; Pruitt, B L; Ding, Z; Abilez, O J

2011-01-01

In this paper, we present a stretchable microelectrode array for studying cell behavior under mechanical strain. The electrode array consists of gold-plated nail-head pins (250 µm tip diameter) or tungsten micro-wires (25.4 µm in diameter) inserted into a polydimethylsiloxane (PDMS) platform (25.4 × 25.4 mm 2 ). Stretchable interconnects to the outside were provided by fusible indium-alloy-filled microchannels. The alloy is liquid at room temperature, thus providing the necessary stretchability and electrical conductivity. The electrode platform can withstand strains of up to 40% and repeated (100 times) strains of up to 35% did not cause any failure in the electrodes or the PDMS substrate. We confirmed biocompatibility of short-term culture, and using the gold pin device, we demonstrated electric field pacing of adult murine heart cells. Further, using the tungsten microelectrode device, we successfully measured depolarizations of differentiated murine heart cells from embryoid body clusters

Timed arrays wideband and time varying antenna arrays

CERN Document Server

Haupt, Randy L

2015-01-01

Introduces timed arrays and design approaches to meet the new high performance standards The author concentrates on any aspect of an antenna array that must be viewed from a time perspective. The first chapters briefly introduce antenna arrays and explain the difference between phased and timed arrays. Since timed arrays are designed for realistic time-varying signals and scenarios, the book also reviews wideband signals, baseband and passband RF signals, polarization and signal bandwidth. Other topics covered include time domain, mutual coupling, wideband elements, and dispersion. The auth

The Contribution of Genetic Recombination to CRISPR Array Evolution.

Science.gov (United States)

Kupczok, Anne; Landan, Giddy; Dagan, Tal

2015-06-16

CRISPR (clustered regularly interspaced short palindromic repeats) is a microbial immune system against foreign DNA. Recognition sequences (spacers) encoded within the CRISPR array mediate the immune reaction in a sequence-specific manner. The known mechanisms for the evolution of CRISPR arrays include spacer acquisition from foreign DNA elements at the time of invasion and array erosion through spacer deletion. Here, we consider the contribution of genetic recombination between homologous CRISPR arrays to the evolution of spacer repertoire. Acquisition of spacers from exogenic arrays via recombination may confer the recipient with immunity against unencountered antagonists. For this purpose, we develop a novel method for the detection of recombination in CRISPR arrays by modeling the spacer order in arrays from multiple strains from the same species. Because the evolutionary signal of spacer recombination may be similar to that of pervasive spacer deletions or independent spacer acquisition, our method entails a robustness analysis of the recombination inference by a statistical comparison to resampled and perturbed data sets. We analyze CRISPR data sets from four bacterial species: two Gammaproteobacteria species harboring CRISPR type I and two Streptococcus species harboring CRISPR type II loci. We find that CRISPR array evolution in Escherichia coli and Streptococcus agalactiae can be explained solely by vertical inheritance and differential spacer deletion. In Pseudomonas aeruginosa, we find an excess of single spacers potentially incorporated into the CRISPR locus during independent acquisition events. In Streptococcus thermophilus, evidence for spacer acquisition by recombination is present in 5 out of 70 strains. Genetic recombination has been proposed to accelerate adaptation by combining beneficial mutations that arose in independent lineages. However, for most species under study, we find that CRISPR evolution is shaped mainly by spacer acquisition and

Two new miniature inverted-repeat transposable elements in the genome of the clam Donax trunculus.

Science.gov (United States)

Šatović, Eva; Plohl, Miroslav

2017-10-01

Repetitive sequences are important components of eukaryotic genomes that drive their evolution. Among them are different types of mobile elements that share the ability to spread throughout the genome and form interspersed repeats. To broaden the generally scarce knowledge on bivalves at the genome level, in the clam Donax trunculus we described two new non-autonomous DNA transposons, miniature inverted-repeat transposable elements (MITEs), named DTC M1 and DTC M2. Like other MITEs, they are characterized by their small size, their A + T richness, and the presence of terminal inverted repeats (TIRs). DTC M1 and DTC M2 are 261 and 286 bp long, respectively, and in addition to TIRs, both of them contain a long imperfect palindrome sequence in their central parts. These elements are present in complete and truncated versions within the genome of the clam D. trunculus. The two new MITEs share only structural similarity, but lack any nucleotide sequence similarity to each other. In a search for related elements in databases, blast search revealed within the Crassostrea gigas genome a larger element sharing sequence similarity only to DTC M1 in its TIR sequences. The lack of sequence similarity with any previously published mobile elements indicates that DTC M1 and DTC M2 elements may be unique to D. trunculus.

The utility of repeat enzyme immunoassay testing for the diagnosis of Clostridium difficile infection: A systematic review of the literature

Directory of Open Access Journals (Sweden)

P S Garimella

2012-01-01

Full Text Available Over the last 20 years, the prevalence of healthcare-associated Clostridium difficile (C. diff disease has increased. While multiple tests are available for the diagnosis of C. diff infection, enzyme immunoassay (EIA testing for toxin is the most used. Repeat EIA testing, although of limited utility, is common in medical practice. To assess the utility of repeat EIA testing to diagnose C. diff infections. Systematic literature review. Eligible studies performed >1 EIA test for C. diff toxin and were published in English. Electronic searches of MEDLINE and EMBASE were performed and bibliographies of review articles and conference abstracts were hand searched. Of 805 citations identified, 32 were reviewed in detail and nine were included in the final review. All studies except one were retrospective chart reviews. Seven studies had data on number of participants (32,526, and the overall reporting of test setting and patient characteristics was poor. The prevalence of C. diff infection ranged from 9.1% to 18.5%. The yield of the first EIA test ranged from 8.4% to 16.6%, dropping to 1.5-4.7% with a second test. The utility of repeat testing was evident in outbreak settings, where the yield of repeat testing was 5%. Repeat C. diff testing for hospitalized patients has low clinical utility and may be considered in outbreak settings or when the pre-test probability of disease is high. Future studies should aim to identify patients with a likelihood of disease and determine the utility of repeat testing compared with empiric treatment.

ArrayBridge: Interweaving declarative array processing with high-performance computing

Energy Technology Data Exchange (ETDEWEB)

Xing, Haoyuan [The Ohio State Univ., Columbus, OH (United States); Floratos, Sofoklis [The Ohio State Univ., Columbus, OH (United States); Blanas, Spyros [The Ohio State Univ., Columbus, OH (United States); Byna, Suren [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Prabhat, Prabhat [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Wu, Kesheng [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Brown, Paul [Paradigm4, Inc., Waltham, MA (United States)

2017-05-04

Scientists are increasingly turning to datacenter-scale computers to produce and analyze massive arrays. Despite decades of database research that extols the virtues of declarative query processing, scientists still write, debug and parallelize imperative HPC kernels even for the most mundane queries. This impedance mismatch has been partly attributed to the cumbersome data loading process; in response, the database community has proposed in situ mechanisms to access data in scientific file formats. Scientists, however, desire more than a passive access method that reads arrays from files. This paper describes ArrayBridge, a bi-directional array view mechanism for scientific file formats, that aims to make declarative array manipulations interoperable with imperative file-centric analyses. Our prototype implementation of ArrayBridge uses HDF5 as the underlying array storage library and seamlessly integrates into the SciDB open-source array database system. In addition to fast querying over external array objects, ArrayBridge produces arrays in the HDF5 file format just as easily as it can read from it. ArrayBridge also supports time travel queries from imperative kernels through the unmodified HDF5 API, and automatically deduplicates between array versions for space efficiency. Our extensive performance evaluation in NERSC, a large-scale scientific computing facility, shows that ArrayBridge exhibits statistically indistinguishable performance and I/O scalability to the native SciDB storage engine.

Discovery of H I gas in a young radio galaxy at z = 0.44 using the Australian Square Kilometre Array Pathfinder

NARCIS (Netherlands)

Allison, J. R.; Sadler, E. M.; Moss, V. A.; Whiting, M. T.; Hunstead, R. W.; Pracy, M. B.; Curran, S. J.; Croom, S. M.; Glowacki, M.; Morganti, R.; Shabala, S. S.; Zwaan, M. A.; Allen, G.; Amy, S. W.; Axtens, P.; Ball, L.; Bannister, K. W.; Barker, S.; Bell, M. E.; Bock, D. C.-J.; Bolton, R.; Bowen, M.; Boyle, B.; Braun, R.; Broadhurst, S.; Brodrick, D.; Brothers, M.; Brown, A.; Bunton, J. D.; Cantrall, C.; Chapman, J.; Cheng, W.; Chippendale, A. P.; Chung, Y.; Cooray, F.; Cornwell, T.; DeBoer, D.; Diamond, P.; Edwards, P. G.; Ekers, R.; Feain, I.; Ferris, R. H.; Forsyth, R.; Gough, R.; Grancea, A.; Gupta, N.; Guzman, J. C.; Hampson, G.; Harvey-Smith, L.; Haskins, C.; Hay, S.; Hayman, D. B.; Heywood, I.; Hotan, A. W.; Hoyle, S.; Humphreys, B.; Indermuehle, B. T.; Jacka, C.; Jackson, C.; Jackson, S.; Jeganathan, K.; Johnston, S.; Joseph, J.; Kendall, R.; Kesteven, M.; Kiraly, D.; Koribalski, B. S.; Leach, M.; Lenc, E.; Lensson, E.; Mackay, S.; Macleod, A.; Marquarding, M.; Marvil, J.; McClure-Griffiths, N.; McConnell, D.; Mirtschin, P.; Norris, R. P.; Neuhold, S.; Ng, A.; O'Sullivan, J.; Pathikulangara, J.; Pearce, S.; Phillips, C.; Popping, A.; Qiao, R. Y.; Reynolds, J. E.; Roberts, P.; Sault, R. J.; Schinckel, A.; Serra, P.; Shaw, R.; Shields, M.; Shimwell, T.; Storey, M.; Sweetnam, T.; Troup, E.; Turner, B.; Tuthill, J.; Tzioumis, A.; Voronkov, M. A.; Westmeier, T.; Wilson, C. D.

2015-01-01

We report the discovery of a new 21-cm H I absorption system using commissioning data from the Boolardy Engineering Test Array of the Australian Square Kilometre Array Pathfinder (ASKAP). Using the 711.5-1015.5 MHz band of ASKAP we were able to conduct a blind search for the 21-cm line in a

A search for spectral lines in gamma-ray bursts using TGRS

International Nuclear Information System (INIS)

Kurczynski, P.; Palmer, D.; Seifert, H.; Teegarden, B. J.; Gehrels, N.; Cline, T. L.; Ramaty, R.; Hurley, K.; Madden, N. W.; Pehl, R. H.

1998-01-01

We present the results of an ongoing search for narrow spectral lines in gamma-ray burst data. TGRS, the Transient Gamma-Ray Spectrometer aboard the Wind satellite is a high energy-resolution Ge device. Thus it is uniquely situated among the array of space-based, burst sensitive instruments to look for line features in gamma-ray burst spectra. Our search strategy adopts a two tiered approach. An automated 'quick look' scan searches spectra for statistically significant deviations from the continuum. We analyzed all possible time accumulations of spectra as well as individual spectra for each burst. Follow-up analysis of potential line candidates uses model fitting with F-test and χ 2 tests for statistical significance

Repeat-associated plasticity in the Helicobacter pylori RD gene family.

Science.gov (United States)

Shak, Joshua R; Dick, Jonathan J; Meinersmann, Richard J; Perez-Perez, Guillermo I; Blaser, Martin J

2009-11-01

The bacterium Helicobacter pylori is remarkable for its ability to persist in the human stomach for decades without provoking sterilizing immunity. Since repetitive DNA can facilitate adaptive genomic flexibility via increased recombination, insertion, and deletion, we searched the genomes of two H. pylori strains for nucleotide repeats. We discovered a family of genes with extensive repetitive DNA that we have termed the H. pylori RD gene family. Each gene of this family is composed of a conserved 3' region, a variable mid-region encoding 7 and 11 amino acid repeats, and a 5' region containing one of two possible alleles. Analysis of five complete genome sequences and PCR genotyping of 42 H. pylori strains revealed extensive variation between strains in the number, location, and arrangement of RD genes. Furthermore, examination of multiple strains isolated from a single subject's stomach revealed intrahost variation in repeat number and composition. Despite prior evidence that the protein products of this gene family are expressed at the bacterial cell surface, enzyme-linked immunosorbent assay and immunoblot studies revealed no consistent seroreactivity to a recombinant RD protein by H. pylori-positive hosts. The pattern of repeats uncovered in the RD gene family appears to reflect slipped-strand mispairing or domain duplication, allowing for redundancy and subsequent diversity in genotype and phenotype. This novel family of hypervariable genes with conserved, repetitive, and allelic domains may represent an important locus for understanding H. pylori persistence in its natural host.

A Search for WIMP Dark Matter Using the First Five-Tower Run of the Cryogenic Dark Matter Search

Energy Technology Data Exchange (ETDEWEB)

Filippini, Jeffrey Peter [UC, Berkeley

2008-01-01

In recent decades astronomers and physicists have accumulated a vast array of evidence that the bulk of the universe's matter is in some non-baryonic form that remains undetected by electromagnetic means. This \\dark matter" resides in diuse halos surrounding galaxies and other cosmic structures. Particle theorists have proposed a wide array of candidates for its nature. One particularly promising class of candidates are Weakly Interacting Massive Particles (WIMPs): quanta with masses of order 100 GeV/c2 and interactions characteristic of the weak nuclear force. The Cryogenic Dark Matter Search (CDMS) experiment seeks to directly detect the rare elastic interactions of galactic WIMPs with terrestrial nuclei. To this end, CDMS operates an array of crystalline Ge and Si particle detectors in Soudan Underground Laboratory in northern Minnesota. These crystals are operated at millikelvin temperatures and instrumented to measure the ionization and athermal phonons generated by each particle interaction. This combination provides a powerful two-fold discrimination against the interactions of particles generated by radioactive decay and cosmogenic showers. This dissertation describes the commissioning, analysis, and results of the rst WIMP-search data runs of the CDMS experiment with its full complement of 5 \\Towers" of detectors. These data represent a substantial increase in target mass and exposure over previous CDMS results. The results of this work place the most stringent limits yet set upon the WIMP-nucleon spin-independent cross section for WIMP masses above 44 GeV/c2 , as well as setting competitive limits on spin-dependent WIMP-nucleon interactions. This work also outlines the larger context of this and other probes of the WIMP theory of dark matter, as well as some current development eorts toward a larger cryogenic experiment.

A simple uniformity test for ultrasound phased arrays.

Science.gov (United States)

Dudley, Nicholas J; Woolley, Darren J

2016-09-01

It is difficult to test phased array ultrasound transducers for non functioning elements. We aimed to modify a widely performed test to improve its ease and effectiveness for these arrays. A paperclip was slowly moved along the transducer array, with the scanner operating in M-mode, imaging at a fundamental frequency with automatic gain and grey scale adjustment disabled. Non-functioning elements are identified by a dark vertical line in the image. The test was repeated several times for each transducer, looking for consistency of results. 2 transducers, with faults already shown by electronic transducer testing, were used to validate the method. 23 transducers in clinical use were tested. The results of the modified test on the 2 faulty transducers agreed closely with electronic transducer testing results. The test indicated faults in 5 of the 23 transducers in clinical use: 3 with a single failed element and 2 with non-uniform sensitivity. 1 transducer with non-uniform sensitivity had undergone lens repair; the new lens was visibly non-uniform in thickness and further testing showed a reduction in depth of penetration and a loss of elevational focus in comparison with a new transducer. The modified test is capable of detecting non-functioning elements. Further work is required to provide a better understanding of more subtle faults. Copyright © 2016 Associazione Italiana di Fisica Medica. All rights reserved.

Parallel RNA extraction using magnetic beads and a droplet array.

Science.gov (United States)

Shi, Xu; Chen, Chun-Hong; Gao, Weimin; Chao, Shih-Hui; Meldrum, Deirdre R

2015-02-21

Nucleic acid extraction is a necessary step for most genomic/transcriptomic analyses, but it often requires complicated mechanisms to be integrated into a lab-on-a-chip device. Here, we present a simple, effective configuration for rapidly obtaining purified RNA from low concentration cell medium. This Total RNA Extraction Droplet Array (TREDA) utilizes an array of surface-adhering droplets to facilitate the transportation of magnetic purification beads seamlessly through individual buffer solutions without solid structures. The fabrication of TREDA chips is rapid and does not require a microfabrication facility or expertise. The process takes less than 5 minutes. When purifying mRNA from bulk marine diatom samples, its repeatability and extraction efficiency are comparable to conventional tube-based operations. We demonstrate that TREDA can extract the total mRNA of about 10 marine diatom cells, indicating that the sensitivity of TREDA approaches single-digit cell numbers.

Searching for millisecond pulsars: surveys, techniques and prospects

International Nuclear Information System (INIS)

Stovall, K; Lorimer, D R; Lynch, R S

2013-01-01

Searches for millisecond pulsars (which we here loosely define as those with periods < 20 ms) in the galactic field have undergone a renaissance in the past five years. New or recently refurbished radio telescopes utilizing cooled receivers and state-of-the art digital data acquisition systems are carrying out surveys of the entire sky at a variety of radio frequencies. Targeted searches for millisecond pulsars in point sources identified by the Fermi Gamma-ray Space Telescope have proved phenomenally successful, with over 50 discoveries in the past five years. The current sample of millisecond pulsars now numbers almost 200 and, for the first time in 25 years, now outnumbers their counterparts in galactic globular clusters. While many of these searches are motivated to find pulsars which form part of pulsar timing arrays, a wide variety of interesting systems are now being found. Following a brief overview of the millisecond pulsar phenomenon, we describe these searches and present some of the highlights of the new discoveries in the past decade. We conclude with predictions and prospects for ongoing and future surveys. (paper)

Search and analysis of superdeformed and oblate states in 193Pb nucleus with the EUROGAM II multidetector array

International Nuclear Information System (INIS)

Ducroux, L.

1997-01-01

This work is devoted to the search and analysis of superdeformed and oblate states in 193 Pb nucleus. High spin states of this isotope, populated via fusion-evaporation reaction 168 Er ( 30 Si, 5n) 193 Pb, have been studied with the EUROGAM II γ multidetector array located near the VIVITRON accelerator in Strasbourg. New sorting and analysis programs have been developed in particular related to the background treatment. Angular distribution and linear polarisation analysis allowed us to assign the γ transition multipolarities. Five dipole bands, corresponding to a weakly oblate-deformed shape of the nucleus, have been observed and connected to the low-lying states. The level scheme has been considerably extended up to a spin of 61/2 ℎ and an excitation energy of about 8 MeV. These structures have been interpreted as based on a high-K two-quasi-proton excitation coupled to rotation aligned quasi-neutrons. Six superdeformed bands, corresponding to a high prolate-deformed shape of the nucleus, have been observed. These six bands have been interpreted as three pairs of signature partners based on quasineutron excitations. The extraction of the g-factor of a K=9/2 neutron superdeformed orbital has been done for the first time in lead isotopes, giving access to the magnetic properties of the extreme nuclear matter. All these results have been discussed in terms of microscopic mean field self-consistent Hartree-Fock calculations using the microscopic 'rotor + particle(s)' model. (author)

Far-infrared contraband-detection-system development for personnel-search applications

International Nuclear Information System (INIS)

Schellenbaum, R.L.

1982-09-01

Experiments have been conducted toward the development of an active near-millimeter-wave, far infrared, personnel search system for the detection of contraband. These experiments employed a microwave hybrid tee interferometer/radiometer scanning system and quasi-optical techniques at 3.3-mm wavelength to illuminate and detect the reflection from target objects against a human body background. Clothing and other common concealing materials are transport at this wavelength. Retroreflector arrays, in conjunction with a Gunn diode radiation source, were investigated to provide all-angle illumination and detection of specular reflections from unaligned and irregular-shaped objects. Results indicate that, under highly controlled search conditions, metal objects greater than or equal to 25 cm 2 can be detected in an enclosure lined with retroreflectors. Further development is required to produce a practical personnel search system. The investigation and feasibility of alternate far infrared search techniques are presented. 23 figures, 2 tables

From foreground to background: how task-neutral context influences contextual cueing of visual search

Directory of Open Access Journals (Sweden)

Xuelian eZang

2016-06-01

Full Text Available Selective attention determines the effectiveness of implicit contextual learning (e.g., Jiang & Leung, 2005. Visual foreground-background segmentation, on the other hand, is a key process in the guidance of attention (Wolfe, 2003. In the present study, we examined the impact of foreground-background segmentation on contextual cueing of visual search in three experiments. A visual search display, consisting of distractor ‘L’s and a target ‘T’, was overlaid on a task-neutral cuboid on the same depth plane (Experiment 1, on stereoscopically separated depth planes (Experiment 2, or spread over the entire display on the same depth plane (Experiment 3. Half of the search displays contained repeated target-distractor arrangements, whereas the other half was always newly generated. The task-neutral cuboid was constant during an initial training session, but was either rotated by 90º or entirely removed in the subsequent test sessions. We found that the gains resulting from repeated presentation of display arrangements during training (i.e., contextual-cueing effects were diminished when the cuboid was changed or removed in Experiment 1, but remained intact in Experiments 2 and 3 when the cuboid was placed in a different depth plane, or when the items were randomly spread over the whole display but not on the edges of the cuboid. These findings suggest that foreground-background segmentation occurs prior to contextual learning, and only objects/arrangements that are grouped as foreground are learned over the course of repeated visual search.

From Foreground to Background: How Task-Neutral Context Influences Contextual Cueing of Visual Search

Science.gov (United States)

Zang, Xuelian; Geyer, Thomas; Assumpção, Leonardo; Müller, Hermann J.; Shi, Zhuanghua

2016-01-01

Selective attention determines the effectiveness of implicit contextual learning (e.g., Jiang and Leung, 2005). Visual foreground-background segmentation, on the other hand, is a key process in the guidance of attention (Wolfe, 2003). In the present study, we examined the impact of foreground-background segmentation on contextual cueing of visual search in three experiments. A visual search display, consisting of distractor ‘L’s and a target ‘T’, was overlaid on a task-neutral cuboid on the same depth plane (Experiment 1), on stereoscopically separated depth planes (Experiment 2), or spread over the entire display on the same depth plane (Experiment 3). Half of the search displays contained repeated target-distractor arrangements, whereas the other half was always newly generated. The task-neutral cuboid was constant during an initial training session, but was either rotated by 90° or entirely removed in the subsequent test sessions. We found that the gains resulting from repeated presentation of display arrangements during training (i.e., contextual-cueing effects) were diminished when the cuboid was changed or removed in Experiment 1, but remained intact in Experiments 2 and 3 when the cuboid was placed in a different depth plane, or when the items were randomly spread over the whole display but not on the edges of the cuboid. These findings suggest that foreground-background segmentation occurs prior to contextual learning, and only objects/arrangements that are grouped as foreground are learned over the course of repeated visual search. PMID:27375530

The Askaryan Radio Array: Overview and Recent Results

Science.gov (United States)

Pfendner, Carl; Askaryan Radio Array (ARA) Collaboration

2017-01-01

The Askaryan Radio Array (ARA) is radio frequency observatory under construction at the South Pole that is searching for ultrahigh energy neutrinos via the Askaryan effect. By instrumenting several gigatons of Antarctic glacial ice, the experiment aims to detect a flux of neutrinos above 10 PeV in energy. The measurement of this expected flux of neutrinos would provide information about the highest energy processes in the universe with no local horizon. The full detector consisting of 37 stations is being constructed in a phased deployment with 3 stations already in place and two more planned for deployment in the 2017-2018 season. Recent results from an analysis of data from two stations and a search for neutrinos correlated with gamma ray bursts are presented here. Funding provided by NSF CAREER Award 1255557, NSF ARA Grant 1404266, BigData Grant 1250720.

Metaheuristic algorithms for building Covering Arrays: A review

Directory of Open Access Journals (Sweden)

Jimena Adriana Timaná-Peña

2016-09-01

Full Text Available Covering Arrays (CA are mathematical objects used in the functional testing of software components. They enable the testing of all interactions of a given size of input parameters in a procedure, function, or logical unit in general, using the minimum number of test cases. Building CA is a complex task (NP-complete problem that involves lengthy execution times and high computational loads. The most effective methods for building CAs are algebraic, Greedy, and metaheuristic-based. The latter have reported the best results to date. This paper presents a description of the major contributions made by a selection of different metaheuristics, including simulated annealing, tabu search, genetic algorithms, ant colony algorithms, particle swarm algorithms, and harmony search algorithms. It is worth noting that simulated annealing-based algorithms have evolved as the most competitive, and currently form the state of the art.

Prospects for PWNe and SNRs science with the ASTRI mini-array of pre-production small-sized telescopes of the Cherenkov telescope array

Science.gov (United States)

Burtovoi, A.; Zampieri, L.; Giuliani, A.; Bigongiari, C.; Di Pierro, F.; Stamerra, A.

2017-01-01

The development and construction of the Cherenkov Telescope Array (CTA) opens up new opportunities for the study of very high energy (VHE, E > 100 GeV) sources. As a part of CTA, the ASTRI project, led by INAF, has one of the main goals to develop one of the mini-arrays of CTA pre-production telescopes, proposed to be installed at the CTA southern site. Thanks to the innovative dual-mirror optical design of its small-sized telescopes, the ASTRI mini-array will be characterized by a large field of view, an excellent angular resolution and a good sensitivity up to energies of several tens of TeV. Pulsar wind nebulae, along with Supernova Remnants, are among the most abundant sources that will be identified and investigated, with the ultimate goal to move significantly closer to an understanding of the origin of cosmic rays (CR). As part of the ongoing effort to investigate the scientific capabilities for both CTA as a whole and the ASTRI mini-array, we performed simulations of the Vela X region. We simulated its extended VHE γ-ray emission using the results of the detailed H.E.S.S. analysis of this source. We estimated the resolving capabilities of the diffuse emission and the detection significance of the pulsar with both CTA as a whole and the ASTRI mini-array. Moreover with these instruments it will be possible to observe the high-energy end of SNRs spectrum, searching for particles with energies near the cosmic-rays "knee" (E ˜ 1015 eV). We simulated a set of ASTRI mini-array observations for one young and an evolved SNRs in order to test the capabilities of this instrument to discover and study PeVatrons on the Galactic plane.

Results of repeated transsphenoidal surgery in Cushing's disease. Long-term follow-up.

Science.gov (United States)

Valderrábano, Pablo; Aller, Javier; García-Valdecasas, Leopoldo; García-Uría, José; Martín, Laura; Palacios, Nuria; Estrada, Javier

2014-04-01

Transsphenoidal surgery (TSS) is the treatment of choice for Cushing's disease (CD). However, the best treatment option when hypercortisolism persists or recurs remains unknown. The aim of this study was to analyze the short and long-term outcome of repeat TSS in this situation and to search for response predictors. Data from 26 patients with persistent (n=11) or recurrent (n=15) hypercortisolism who underwent repeat surgery by a single neurosurgeon between 1982 and 2009 were retrospectively analyzed. Remission was defined as normalization of urinary free cortisol (UFC) levels, and recurrence as presence of elevated UFC levels after having achieved remission. The following potential outcome predictors were analyzed: adrenal status (persistence or recurrence) after initial TSS, tumor identification in imaging tests, degree of hypercortisolism before repeat TSS, same/different surgeon in both TSS, and time to repeat surgery. Immediate postoperative remission was achieved in 12 patients (46.2%). Five of the 10 patients with available follow-up data relapsed after surgery (median time to recurrence, 13 months). New hormone deficiencies were seen in seven patients (37%), and two patients had cerebrospinal fluid leakage. No other major complications occurred. None of the preoperative factors analyzed was predictive of surgical outcome. When compared to initial surgery, repeat TSS for CD is associated to a lower remission rate and a higher risk of recurrence and complications. Further studies are needed to define outcome predictors. Copyright © 2013 SEEN. Published by Elsevier Espana. All rights reserved.

Analyzing Responses of Chemical Sensor Arrays

Science.gov (United States)

Zhou, Hanying

2007-01-01

NASA is developing a third-generation electronic nose (ENose) capable of continuous monitoring of the International Space Station s cabin atmosphere for specific, harmful airborne contaminants. Previous generations of the ENose have been described in prior NASA Tech Briefs issues. Sensor selection is critical in both (prefabrication) sensor material selection and (post-fabrication) data analysis of the ENose, which detects several analytes that are difficult to detect, or that are at very low concentration ranges. Existing sensor selection approaches usually include limited statistical measures, where selectivity is more important but reliability and sensitivity are not of concern. When reliability and sensitivity can be major limiting factors in detecting target compounds reliably, the existing approach is not able to provide meaningful selection that will actually improve data analysis results. The approach and software reported here consider more statistical measures (factors) than existing approaches for a similar purpose. The result is a more balanced and robust sensor selection from a less than ideal sensor array. The software offers quick, flexible, optimal sensor selection and weighting for a variety of purposes without a time-consuming, iterative search by performing sensor calibrations to a known linear or nonlinear model, evaluating the individual sensor s statistics, scoring the individual sensor s overall performance, finding the best sensor array size to maximize class separation, finding optimal weights for the remaining sensor array, estimating limits of detection for the target compounds, evaluating fingerprint distance between group pairs, and finding the best event-detecting sensors.

The ASTRI Mini-Array Science Case

Science.gov (United States)

Vercellone, Stefano; Catalano, O.; Maccarone, M.; Stamerra, A.; Di Pierro, F.; Vallania, P.; Canestrari, R.; Bonnoli, G.; Pareschi, G.; Tosti, G.; Caraveo, P.; ASTRI Collaboration

2013-04-01

ASTRI is a flagship project of the Italian Ministry of Education, University and Research. Within this framework, INAF is currently developing an end-to-end prototype of the CTA small-size telescope in a dual-mirror configuration (SST-2M) to be tested under field conditions, and scheduled to start data acquisition in 2014. A remarkable improvement in terms of performance could come from the operation, in 2016, of a SST-2M mini-array, composed by a few SST-2M telescopes and to be placed at final CTA Southern Site. The SST mini-array will be able to study in great detail relatively bright sources (a few x10E-12 erg/cm2/s at 10 TeV) with an angular resolution of a few arcmin and an energy resolution of about 10 - 15%. Moreover, thanks to the array approach, it will be possible to verify the wide FoV performance to detect very high energy showers with the core located at a distance up to 500 m, to compare the mini-array performance with the Monte Carlo expectations by means of deep observations of few selected targets, and to perform the first CTA science, with its first solid detections during the first year of operation. Prominent sources such as extreme blazars (1ES 0229+200), nearby well-known BL Lac objects (MKN 501) and radio-galaxies, galactic pulsar wind nebulae (Crab Nebula, Vela-X), supernovae remnants (Vela-junior, RX J1713.7-3946) and microquasars (LS 5039), as well as the Galactic Center can be observed in a previously unexplored energy range, in order to investigate the electron acceleration and cooling, relativistic and non relativistic shocks, the search for cosmic-ray (CR) Pevatrons, the study of the CR propagation, and the impact of the extragalactic background light on the spectra of the sources.

Detection of Emotional Faces: Salient Physical Features Guide Effective Visual Search

Science.gov (United States)

Calvo, Manuel G.; Nummenmaa, Lauri

2008-01-01

In this study, the authors investigated how salient visual features capture attention and facilitate detection of emotional facial expressions. In a visual search task, a target emotional face (happy, disgusted, fearful, angry, sad, or surprised) was presented in an array of neutral faces. Faster detection of happy and, to a lesser extent,…

Clustered Regularly Interspaced Short Palindromic Repeats Are emm Type-Specific in Highly Prevalent Group A Streptococci.

Science.gov (United States)

Zheng, Po-Xing; Chan, Yuen-Chi; Chiou, Chien-Shun; Chiang-Ni, Chuan; Wang, Shu-Ying; Tsai, Pei-Jane; Chuang, Woei-Jer; Lin, Yee-Shin; Liu, Ching-Chuan; Wu, Jiunn-Jong

2015-01-01

Clustered regularly interspaced short palindromic repeats (CRISPR) are the bacterial adaptive immune system against foreign nucleic acids. Given the variable nature of CRISPR, it could be a good marker for molecular epidemiology. Group A streptococcus is one of the major human pathogens. It has two CRISPR loci, including CRISPR01 and CRISPR02. The aim of this study was to analyze the distribution of CRISPR-associated gene cassettes (cas) and CRISPR arrays in highly prevalent emm types. The cas cassette and CRISPR array in two CRISPR loci were analyzed in a total of 332 strains, including emm1, emm3, emm4, emm12, and emm28 strains. The CRISPR type was defined by the spacer content of each CRISPR array. All strains had at least one cas cassette or CRISPR array. More than 90% of the spacers were found in one emm type, specifically. Comparing the consistency between emm and CRISPR types by Simpson's index of diversity and the adjusted Wallace coefficient, CRISPR01 type was concordant to emm type, and CRISPR02 showed unidirectional congruence to emm type, suggesting that at least for the majority of isolates causing infection in high income countries, the emm type can be inferred from CRISPR analysis, which can further discriminate isolates sharing the same emm type.

Report for Detection of Biothreat Agents and Environmental Samples using the LLNL Virulence Array for DHS

Energy Technology Data Exchange (ETDEWEB)

Jaing, Crystal [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Gardner, Shea [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); McLoughlin, Kevin [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Thissen, James [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Jackson, Paul [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

2011-04-18

The objective of this project is to provide DHS a comprehensive evaluation of the current genomic technologies including genotyping, Taqman PCR, multiple locus variable tandem repeat analysis (MLVA), microarray and high-throughput DNA sequencing in the analysis of biothreat agents from complex environmental samples. This report focuses on the design, testing and results of samples on the Virulence Array.

Attentional Capture by Salient Distractors during Visual Search Is Determined by Temporal Task Demands

DEFF Research Database (Denmark)

Kiss, Monika; Grubert, Anna; Petersen, Anders

2012-01-01

The question whether attentional capture by salient but taskirrelevant visual stimuli is triggered in a bottom–up fashion or depends on top–down task settings is still unresolved. Strong support for bottom–up capture was obtained in the additional singleton task, in which search arrays were visible...... until response onset. Equally strong evidence for top–down control of attentional capture was obtained in spatial cueing experiments in which display durations were very brief. To demonstrate the critical role of temporal task demands on salience-driven attentional capture, we measured ERP indicators...... component that was followed by a late Pd component, suggesting that they triggered attentional capture, which was later replaced by location-specific inhibition. When search arrays were visible for only 200 msec, the distractor-elicited N2pc was eliminated and was replaced by a Pd component in the same time...

Evidence for negative feature guidance in visual search is explained by spatial recoding.

Science.gov (United States)

Beck, Valerie M; Hollingworth, Andrew

2015-10-01

Theories of attention and visual search explain how attention is guided toward objects with known target features. But can attention be directed away from objects with a feature known to be associated only with distractors? Most studies have found that the demand to maintain the to-be-avoided feature in visual working memory biases attention toward matching objects rather than away from them. In contrast, Arita, Carlisle, and Woodman (2012) claimed that attention can be configured to selectively avoid objects that match a cued distractor color, and they reported evidence that this type of negative cue generates search benefits. However, the colors of the search array items in Arita et al. (2012) were segregated by hemifield (e.g., blue items on the left, red on the right), which allowed for a strategy of translating the feature-cue information into a simple spatial template (e.g., avoid right, or attend left). In the present study, we replicated the negative cue benefit using the Arita et al. (2012), method (albeit within a subset of participants who reliably used the color cues to guide attention). Then, we eliminated the benefit by using search arrays that could not be grouped by hemifield. Our results suggest that feature-guided avoidance is implemented only indirectly, in this case by translating feature-cue information into a spatial template. (c) 2015 APA, all rights reserved).

Direct observation of TALE protein dynamics reveals a two-state search mechanism.

Science.gov (United States)

Cuculis, Luke; Abil, Zhanar; Zhao, Huimin; Schroeder, Charles M

2015-06-01

Transcription activator-like effector (TALE) proteins are a class of programmable DNA-binding proteins for which the fundamental mechanisms governing the search process are not fully understood. Here we use single-molecule techniques to directly observe TALE search dynamics along DNA templates. We find that TALE proteins are capable of rapid diffusion along DNA using a combination of sliding and hopping behaviour, which suggests that the TALE search process is governed in part by facilitated diffusion. We also observe that TALE proteins exhibit two distinct modes of action during the search process-a search state and a recognition state-facilitated by different subdomains in monomeric TALE proteins. Using TALE truncation mutants, we further demonstrate that the N-terminal region of TALEs is required for the initial non-specific binding and subsequent rapid search along DNA, whereas the central repeat domain is required for transitioning into the site-specific recognition state.

A Wearable Transcranial Doppler Ultrasound Phased Array System.

Science.gov (United States)

Pietrangelo, Sabino J; Lee, Hae-Seung; Sodini, Charles G

2018-01-01

 Practical deficiencies related to conventional transcranial Doppler (TCD) sonography have restricted its use and applicability. This work seeks to mitigate several such constraints through the development of a wearable, electronically steered TCD velocimetry system, which enables noninvasive measurement of cerebral blood flow velocity (CBFV) for monitoring applications with limited operator interaction. A highly-compact, discrete prototype system was designed and experimentally validated through flow phantom and preliminary human subject testing. The prototype system incorporates a custom two-dimensional transducer array and multi-channel transceiver electronics, thereby facilitating acoustic beamformation via phased array operation. Electronic steering of acoustic energy enables algorithmic system controls to map Doppler power throughout the tissue volume of interest and localize regions of maximal flow. Multi-focal reception permits dynamic vessel position tracking and simultaneous flow velocimetry over the time-course of monitoring. Experimental flow phantom testing yielded high correlation with concurrent flowmeter recordings across the expected range of physiological flow velocities. Doppler power mapping has been validated in both flow phantom and preliminary human subject testing, resulting in average vessel location mapping times testing. A wearable prototype CBFV measurement system capable of autonomous vessel search and tracking has been presented. Although flow phantom and preliminary human validation show promise, further human subject testing is necessary to compare velocimetry data against existing commercial TCD systems. Additional human subject testing must also verify acceptable vessel search and tracking performance under a variety of subject populations and motion dynamics-such as head movement and ambulation.

A high-throughput liquid bead array-based screening technology for Bt presence in GMO manipulation.

Science.gov (United States)

Fu, Wei; Wang, Huiyu; Wang, Chenguang; Mei, Lin; Lin, Xiangmei; Han, Xueqing; Zhu, Shuifang

2016-03-15

The number of species and planting areas of genetically modified organisms (GMOs) has been rapidly developed during the past ten years. For the purpose of GMO inspection, quarantine and manipulation, we have now devised a high-throughput Bt-based GMOs screening method based on the liquid bead array. This novel method is based on the direct competitive recognition between biotinylated antibodies and beads-coupled antigens, searching for Bt presence in samples if it contains Bt Cry1 Aa, Bt Cry1 Ab, Bt Cry1 Ac, Bt Cry1 Ah, Bt Cry1 B, Bt Cry1 C, Bt Cry1 F, Bt Cry2 A, Bt Cry3 or Bt Cry9 C. Our method has a wide GMO species coverage so that more than 90% of the whole commercialized GMO species can be identified throughout the world. Under our optimization, specificity, sensitivity, repeatability and availability validation, the method shows a high specificity and 10-50 ng/mL sensitivity of quantification. We then assessed more than 1800 samples in the field and food market to prove capacity of our method in performing a high throughput screening work for GMO manipulation. Our method offers an applicant platform for further inspection and research on GMO plants. Copyright © 2015 Elsevier B.V. All rights reserved.

Extrachromosomal circles of satellite repeats and 5S ribosomal DNA in human cells

Directory of Open Access Journals (Sweden)

Cohen Sarit

2010-03-01

Full Text Available Abstract Background Extrachomosomal circular DNA (eccDNA is ubiquitous in eukaryotic organisms and was detected in every organism tested, including in humans. A two-dimensional gel electrophoresis facilitates the detection of eccDNA in preparations of genomic DNA. Using this technique we have previously demonstrated that most of eccDNA consists of exact multiples of chromosomal tandemly repeated DNA, including both coding genes and satellite DNA. Results Here we report the occurrence of eccDNA in every tested human cell line. It has heterogeneous mass ranging from less than 2 kb to over 20 kb. We describe eccDNA homologous to human alpha satellite and the SstI mega satellite. Moreover, we show, for the first time, circular multimers of the human 5S ribosomal DNA (rDNA, similar to previous findings in Drosophila and plants. We further demonstrate structures that correspond to intermediates of rolling circle replication, which emerge from the circular multimers of 5S rDNA and SstI satellite. Conclusions These findings, and previous reports, support the general notion that every chromosomal tandem repeat is prone to generate eccDNA in eukryoric organisms including humans. They suggest the possible involvement of eccDNA in the length variability observed in arrays of tandem repeats. The implications of eccDNA on genome biology may include mechanisms of centromere evolution, concerted evolution and homogenization of tandem repeats and genomic plasticity.

Development of maizeSNP3072, a high-throughput compatible SNP array, for DNA fingerprinting identification of Chinese maize varieties.

Science.gov (United States)

Tian, Hong-Li; Wang, Feng-Ge; Zhao, Jiu-Ran; Yi, Hong-Mei; Wang, Lu; Wang, Rui; Yang, Yang; Song, Wei

2015-01-01

Single nucleotide polymorphisms (SNPs) are abundant and evenly distributed throughout the maize ( Zea mays L.) genome. SNPs have several advantages over simple sequence repeats, such as ease of data comparison and integration, high-throughput processing of loci, and identification of associated phenotypes. SNPs are thus ideal for DNA fingerprinting, genetic diversity analysis, and marker-assisted breeding. Here, we developed a high-throughput and compatible SNP array, maizeSNP3072, containing 3072 SNPs developed from the maizeSNP50 array. To improve genotyping efficiency, a high-quality cluster file, maizeSNP3072_GT.egt, was constructed. All 3072 SNP loci were localized within different genes, where they were distributed in exons (43 %), promoters (21 %), 3' untranslated regions (UTRs; 22 %), 5' UTRs (9 %), and introns (5 %). The average genotyping failure rate using these SNPs was only 6 %, or 3 % using the cluster file to call genotypes. The genotype consistency of repeat sample analysis on Illumina GoldenGate versus Infinium platforms exceeded 96.4 %. The minor allele frequency (MAF) of the SNPs averaged 0.37 based on data from 309 inbred lines. The 3072 SNPs were highly effective for distinguishing among 276 examined hybrids. Comparative analysis using Chinese varieties revealed that the 3072SNP array showed a better marker success rate and higher average MAF values, evaluation scores, and variety-distinguishing efficiency than the maizeSNP50K array. The maizeSNP3072 array thus can be successfully used in DNA fingerprinting identification of Chinese maize varieties and shows potential as a useful tool for germplasm resource evaluation and molecular marker-assisted breeding.

Genetic local search algorithm for optimization design of diffractive optical elements.

Science.gov (United States)

Zhou, G; Chen, Y; Wang, Z; Song, H

1999-07-10

We propose a genetic local search algorithm (GLSA) for the optimization design of diffractive optical elements (DOE's). This hybrid algorithm incorporates advantages of both genetic algorithm (GA) and local search techniques. It appears better able to locate the global minimum compared with a canonical GA. Sample cases investigated here include the optimization design of binary-phase Dammann gratings, continuous surface-relief grating array generators, and a uniform top-hat focal plane intensity profile generator. Two GLSA's whose incorporated local search techniques are the hill-climbing method and the simulated annealing algorithm are investigated. Numerical experimental results demonstrate that the proposed algorithm is highly efficient and robust. DOE's that have high diffraction efficiency and excellent uniformity can be achieved by use of the algorithm we propose.

Combining of Direct Search and Signal-to-Noise Ratio for economic dispatch optimization

International Nuclear Information System (INIS)

Lin, Whei-Min; Gow, Hong-Jey; Tsai, Ming-Tang

2011-01-01

This paper integrated the ideas of Direct Search and Signal-to-Noise Ratio (SNR) to develop a Novel Direct Search (NDS) method for solving the non-convex economic dispatch problems. NDS consists of three stages: Direct Search (DS), Global SNR (GSNR) and Marginal Compensation (MC) stages. DS provides a basic solution. GSNR searches the point with optimization strategy. MC fulfills the power balance requirement. With NDS, the infinite solution space becomes finite. Furthermore, a same optimum solution can be repeatedly reached. Effectiveness of NDS is demonstrated with three examples and the solutions were compared with previously published results. Test results show that the proposed method is simple, robust, and more effective than many other previously developed algorithms.

Heterogeneous metal-oxide nanowire micro-sensor array for gas sensing

International Nuclear Information System (INIS)

DeMeo, Dante; E Vandervelde, Thomas; MacNaughton, Sam; Sonkusale, Sameer; Wang, Zhilong; Zhang, Xinjie

2014-01-01

Vanadium oxide, manganese oxide, tungsten oxide, and nickel oxide nanowires were investigated for their applicability as chemiresistive gas sensors. Nanowires have excellent surface-to-volume ratios which yield higher sensitivities than bulk materials. Sensing elements consisting of these materials were assembled in an array to create an electronic nose platform. Dielectrophoresis was used to position the nanomaterials onto a microfabricated array of electrodes, which was subsequently mounted onto a leadless chip carrier and printed circuit board for rapid testing. Samples were tested in an enclosed chamber with vapors of acetone, isopropanol, methanol, and aqueous ammonia. The change in resistance of each assembly was measured. Responses varied between nanowire compositions, each demonstrating unique and repeatable responses to different gases; this enabled direct detection of the gases from the ensemble response. Sensitivities were calculated based on the fractional resistance change in a saturated environment and ranged from 6 × 10 −4 to 2 × 10 −5 %change ppm −1 . (papers)

Laser radar range and detection performance for MEMS corner cube retroreflector arrays

Science.gov (United States)

Grasso, Robert J.; Odhner, Jefferson E.; Stewart, Hamilton; McDaniel, Robert V.

2004-12-01

BAE SYSTEMS reports on a program to characterize the performance of MEMS corner cube retroreflector arrays under laser illumination. These arrays have significant military and commercial application in the areas of: 1) target identification; 2) target tracking; 3) target location; 4) identification friend-or-foe (IFF); 5) parcel tracking, and; 6) search and rescue assistance. BAE SYSTEMS has theoretically determined the feasibility of these devices to learn if sufficient signal-to-noise performance exists to permit a cooperative laser radar sensor to be considered for device location and interrogation. Results indicate that modest power-apertures are required to achieve SNR performance consistent with high probability of detection and low false alarm rates.

Research on geometric rectification of the Large FOV Linear Array Whiskbroom Image

Science.gov (United States)

Liu, Dia; Liu, Hui-tong; Dong, Hao; Liu, Xiao-bo

2015-08-01

To solve the geometric distortion problem of large FOV linear array whiskbroom image, a model of multi center central projection collinearity equation was founded considering its whiskbroom and linear CCD imaging feature, and the principle of distortion was analyzed. Based on the rectification method with POS, we introduced the angular position sensor data of the servo system, and restored the geometric imaging process exactly. An indirect rectification scheme aiming at linear array imaging with best scanline searching method was adopted, matrixes for calculating the exterior orientation elements was redesigned. We improved two iterative algorithms for this device, and did comparison and analysis. The rectification for the images of airborne imaging experiment showed ideal effect.

Array-based FMR1 sequencing and deletion analysis in patients with a fragile X syndrome-like phenotype.

Directory of Open Access Journals (Sweden)

Stephen C Collins

2010-03-01

Full Text Available Fragile X syndrome (FXS is caused by loss of function mutations in the FMR1 gene. Trinucleotide CGG-repeat expansions, resulting in FMR1 gene silencing, are the most common mutations observed at this locus. Even though the repeat expansion mutation is a functional null mutation, few conventional mutations have been identified at this locus, largely due to the clinical laboratory focus on the repeat tract.To more thoroughly evaluate the frequency of conventional mutations in FXS-like patients, we used an array-based method to sequence FMR1 in 51 unrelated males exhibiting several features characteristic of FXS but with normal CGG-repeat tracts of FMR1. One patient was identified with a deletion in FMR1, but none of the patients were found to have other conventional mutations.These data suggest that missense mutations in FMR1 are not a common cause of the FXS phenotype in patients who have normal-length CGG-repeat tracts. However, screening for small deletions of FMR1 may be of clinically utility.

Awareness in contextual cueing of visual search as measured with concurrent access- and phenomenal-consciousness tasks.

Science.gov (United States)

Schlagbauer, Bernhard; Müller, Hermann J; Zehetleitner, Michael; Geyer, Thomas

2012-10-25

In visual search, context information can serve as a cue to guide attention to the target location. When observers repeatedly encounter displays with identical target-distractor arrangements, reaction times (RTs) are faster for repeated relative to nonrepeated displays, the latter containing novel configurations. This effect has been termed "contextual cueing." The present study asked whether information about the target location in repeated displays is "explicit" (or "conscious") in nature. To examine this issue, observers performed a test session (after an initial training phase in which RTs to repeated and nonrepeated displays were measured) in which the search stimuli were presented briefly and terminated by visual masks; following this, observers had to make a target localization response (with accuracy as the dependent measure) and indicate their visual experience and confidence associated with the localization response. The data were examined at the level of individual displays, i.e., in terms of whether or not a repeated display actually produced contextual cueing. The results were that (a) contextual cueing was driven by only a very small number of about four actually learned configurations; (b) localization accuracy was increased for learned relative to nonrepeated displays; and (c) both consciousness measures were enhanced for learned compared to nonrepeated displays. It is concluded that contextual cueing is driven by only a few repeated displays and the ability to locate the target in these displays is associated with increased visual experience.

ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses

Science.gov (United States)

Stokes, Todd H; Torrance, JT; Li, Henry; Wang, May D

2008-01-01

Background A survey of microarray databases reveals that most of the repository contents and data models are heterogeneous (i.e., data obtained from different chip manufacturers), and that the repositories provide only basic biological keywords linking to PubMed. As a result, it is difficult to find datasets using research context or analysis parameters information beyond a few keywords. For example, to reduce the "curse-of-dimension" problem in microarray analysis, the number of samples is often increased by merging array data from different datasets. Knowing chip data parameters such as pre-processing steps (e.g., normalization, artefact removal, etc), and knowing any previous biological validation of the dataset is essential due to the heterogeneity of the data. However, most of the microarray repositories do not have meta-data information in the first place, and do not have a a mechanism to add or insert this information. Thus, there is a critical need to create "intelligent" microarray repositories that (1) enable update of meta-data with the raw array data, and (2) provide standardized archiving protocols to minimize bias from the raw data sources. Results To address the problems discussed, we have developed a community maintained system called ArrayWiki that unites disparate meta-data of microarray meta-experiments from multiple primary sources with four key features. First, ArrayWiki provides a user-friendly knowledge management interface in addition to a programmable interface using standards developed by Wikipedia. Second, ArrayWiki includes automated quality control processes (caCORRECT) and novel visualization methods (BioPNG, Gel Plots), which provide extra information about data quality unavailable in other microarray repositories. Third, it provides a user-curation capability through the familiar Wiki interface. Fourth, ArrayWiki provides users with simple text-based searches across all experiment meta-data, and exposes data to search engine crawlers

Programmable DNA-binding proteins from Burkholderia provide a fresh perspective on the TALE-like repeat domain.

Science.gov (United States)

de Lange, Orlando; Wolf, Christina; Dietze, Jörn; Elsaesser, Janett; Morbitzer, Robert; Lahaye, Thomas

2014-06-01

The tandem repeats of transcription activator like effectors (TALEs) mediate sequence-specific DNA binding using a simple code. Naturally, TALEs are injected by Xanthomonas bacteria into plant cells to manipulate the host transcriptome. In the laboratory TALE DNA binding domains are reprogrammed and used to target a fused functional domain to a genomic locus of choice. Research into the natural diversity of TALE-like proteins may provide resources for the further improvement of current TALE technology. Here we describe TALE-like proteins from the endosymbiotic bacterium Burkholderia rhizoxinica, termed Bat proteins. Bat repeat domains mediate sequence-specific DNA binding with the same code as TALEs, despite less than 40% sequence identity. We show that Bat proteins can be adapted for use as transcription factors and nucleases and that sequence preferences can be reprogrammed. Unlike TALEs, the core repeats of each Bat protein are highly polymorphic. This feature allowed us to explore alternative strategies for the design of custom Bat repeat arrays, providing novel insights into the functional relevance of non-RVD residues. The Bat proteins offer fertile grounds for research into the creation of improved programmable DNA-binding proteins and comparative insights into TALE-like evolution. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

Repeat-Associated Plasticity in the Helicobacter pylori RD Gene Family▿ †

Science.gov (United States)

Shak, Joshua R.; Dick, Jonathan J.; Meinersmann, Richard J.; Perez-Perez, Guillermo I.; Blaser, Martin J.

2009-01-01

The bacterium Helicobacter pylori is remarkable for its ability to persist in the human stomach for decades without provoking sterilizing immunity. Since repetitive DNA can facilitate adaptive genomic flexibility via increased recombination, insertion, and deletion, we searched the genomes of two H. pylori strains for nucleotide repeats. We discovered a family of genes with extensive repetitive DNA that we have termed the H. pylori RD gene family. Each gene of this family is composed of a conserved 3′ region, a variable mid-region encoding 7 and 11 amino acid repeats, and a 5′ region containing one of two possible alleles. Analysis of five complete genome sequences and PCR genotyping of 42 H. pylori strains revealed extensive variation between strains in the number, location, and arrangement of RD genes. Furthermore, examination of multiple strains isolated from a single subject's stomach revealed intrahost variation in repeat number and composition. Despite prior evidence that the protein products of this gene family are expressed at the bacterial cell surface, enzyme-linked immunosorbent assay and immunoblot studies revealed no consistent seroreactivity to a recombinant RD protein by H. pylori-positive hosts. The pattern of repeats uncovered in the RD gene family appears to reflect slipped-strand mispairing or domain duplication, allowing for redundancy and subsequent diversity in genotype and phenotype. This novel family of hypervariable genes with conserved, repetitive, and allelic domains may represent an important locus for understanding H. pylori persistence in its natural host. PMID:19749042

U.H.E. γ-ray observations with the EAS-TOP array

International Nuclear Information System (INIS)

Aglietta, M.; Alessandro, B.; Arneodo, F.; Badino, G.; Bergamasco, L.; Castagnoli, C.; Castellina, A.; Cattadori, C.; Chiavassa, A.; Cini, G.; Piazzoli, B.D.; Fulgione, W.; Ghia, P.L.; Galeotti, P.; Mannocchi, G.; Morello, C.; Navarra, G.; Periale, L.; Riccati, L.; Saavedra, O.; Trinchero, G.C.; Vallania, P.; Vernetto, S.

1991-01-01

The EAS-TOP array at Gran Sasso (Italy) has been fully operating as a gamma-ray astronomy observatory since the beginning of 1989 (energy range 10 14 -10 17 eV). We present the results on search for gamma ray emission from candidate point sources in northern hemisphere obtained by data collected through 1989-1990. The UHE energy event observed from Crab Nebula on February 23rd, 1989, is also discussed

Model Independent Search For New Physics At The Tevatron

Energy Technology Data Exchange (ETDEWEB)

Choudalakis, Georgios [Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States)

2008-04-01

The Standard Model of elementary particles can not be the final theory. There are theoretical reasons to expect the appearance of new physics, possibly at the energy scale of few TeV. Several possible theories of new physics have been proposed, each with unknown probability to be confirmed. Instead of arbitrarily choosing to examine one of those theories, this thesis is about searching for any sign of new physics in a model-independent way. This search is performed at the Collider Detector at Fermilab (CDF). The Standard Model prediction is implemented in all final states simultaneously, and an array of statistical probes is employed to search for significant discrepancies between data and prediction. The probes are sensitive to overall population discrepancies, shape disagreements in distributions of kinematic quantities of final particles, excesses of events of large total transverse momentum, and local excesses of data expected from resonances due to new massive particles. The result of this search, first in 1 fb^-1 and then in 2 fb^-1, is null, namely no considerable evidence of new physics was found.

High performance flexible pH sensor based on polyaniline nanopillar array electrode.

Science.gov (United States)

Yoon, Jo Hee; Hong, Seok Bok; Yun, Seok-Oh; Lee, Seok Jae; Lee, Tae Jae; Lee, Kyoung G; Choi, Bong Gill

2017-03-15

Flexible pH sensor technologies have attracted a great deal of attention in many applications, such as, wearable health care devices and monitors for chemical and biological processes. Here, we fabricated flexible and thin pH sensors using a two electrode configuration comprised of a polyaniline nanopillar (PAN) array working electrode and an Ag/AgCl reference electrode. In order to provide nanostructure, soft lithography using a polymeric blend was employed to create a flexible nanopillar backbone film. Polyaniline-sensing materials were deposited on a patterned-nanopillar array by electrochemical deposition. The pH sensors produced exhibited a near-Nernstian response (∼60.3mV/pH), which was maintained in a bent state. In addition, pH sensors showed other excellent sensor performances in terms of response time, reversibility, repeatability, selectivity, and stability. Copyright © 2016 Elsevier Inc. All rights reserved.

Thrombospondin-1 type 1 repeats in a model of inflammatory bowel disease: transcript profile and therapeutic effects.

Directory of Open Access Journals (Sweden)

Zenaida P Lopez-Dee

Full Text Available Thrombospondin-1 (TSP-1 is a matricellular protein with regulatory functions in inflammation and cancer. The type 1 repeats (TSR domains of TSP-1 have been shown to interact with a wide range of proteins that result in the anti-angiogenic and anti-tumor properties of TSP-1. To ascertain possible functions and evaluate potential therapeutic effects of TSRs in inflammatory bowel disease, we conducted clinical, histological and microarray analyses on a mouse model of induced colitis. We used dextran sulfate sodium (DSS to induce colitis in wild-type (WT mice for 7 days. Simultaneously, mice were injected with either saline or one form of TSP-1 derived recombinant proteins, containing either (1 the three type 1 repeats of the TSP-1 (3TSR, (2 the second type 1 repeat (TSR2, or (3 TSR2 with the RFK sequence (TSR2+RFK. Total RNA isolated from the mice colons were processed and hybridized to mouse arrays. Array data were validated by real-time qPCR and immunohistochemistry. Histological and disease indices reveal that the mice treated with the TSRs show different patterns of leukocytic infiltration and that 3TSR treatment was the most effective in decreasing inflammation in DSS-induced colitis. Transcriptional profiling revealed differentially expressed (DE genes, with the 3TSR-treated mice showing the least deviation from the WT-water controls. In conclusion, this study shows that 3TSR treatment is effective in attenuating the inflammatory response to DSS injury. In addition, the transcriptomics work unveils novel genetic data that suggest beneficial application of the TSR domains in inflammatory bowel disease.

Planetary Radar Imaging with the Deep-Space Network's 34 Meter Uplink Array

Science.gov (United States)

Vilnrotter, Victor; Tsao, P.; Lee, D.; Cornish, T.; Jao, J.; Slade, M.

2011-01-01

A coherent Uplink Array consisting of two or three 34-meter antennas of NASA's Deep Space Network has been developed for the primary purpose of increasing EIRP at the spacecraft. Greater EIRP ensures greater reach, higher uplink data rates for command and configuration control, as well as improved search and recovery capabilities during spacecraft emergencies. It has been conjectured that Doppler-delay radar imaging of lunar targets can be extended to planetary imaging, where the long baseline of the uplink array can provide greater resolution than a single antenna, as well as potentially higher EIRP. However, due to the well known R4 loss in radar links, imaging of distant planets is a very challenging endeavor, requiring accurate phasing of the Uplink Array antennas, cryogenically cooled low-noise receiver amplifiers, and sophisticated processing of the received data to extract the weak echoes characteristic of planetary radar. This article describes experiments currently under way to image the planets Mercury and Venus, highlights improvements in equipment and techniques, and presents planetary images obtained to date with two 34 meter antennas configured as a coherently phased Uplink Array.

Spatial capture-recapture models for search-encounter data

Science.gov (United States)

Royle, J. Andrew; Kery, Marc; Guelat, Jerome

2011-01-01

1. Spatial capture–recapture models make use of auxiliary data on capture location to provide density estimates for animal populations. Previously, models have been developed primarily for fixed trap arrays which define the observable locations of individuals by a set of discrete points. 2. Here, we develop a class of models for 'search-encounter' data, i.e. for detections of recognizable individuals in continuous space, not restricted to trap locations. In our hierarchical model, detection probability is related to the average distance between individual location and the survey path. The locations are allowed to change over time owing to movements of individuals, and individual locations are related formally by a model describing individual activity or home range centre which is itself regarded as a latent variable in the model. We provide a Bayesian analysis of the model in WinBUGS, and develop a custom MCMC algorithm in the R language. 3. The model is applied to simulated data and to territory mapping data for the Willow Tit from the Swiss Breeding Bird Survey MHB. While the observed density was 15 territories per nominal 1 km2 plot of unknown effective sample area, the model produced a density estimate of 21∙12 territories per square km (95% posterior interval: 17–26). 4. Spatial capture–recapture models are relevant to virtually all animal population studies that seek to estimate population size or density, yet existing models have been proposed mainly for conventional sampling using arrays of traps. Our model for search-encounter data, where the spatial pattern of searching can be arbitrary and may change over occasions, greatly expands the scope and utility of spatial capture–recapture models.

Unique sudden onsets capture attention even when observers are in feature-search mode.

Science.gov (United States)

Spalek, Thomas M; Yanko, Matthew R; Poiese, Paola; Lagroix, Hayley E P

2012-01-01

Two sources of attentional capture have been proposed: stimulus-driven (exogenous) and goal-oriented (endogenous). A resolution between these modes of capture has not been straightforward. Even such a clearly exogenous event as the sudden onset of a stimulus can be said to capture attention endogenously if observers operate in singleton-detection mode rather than feature-search mode. In four experiments we show that a unique sudden onset captures attention even when observers are in feature-search mode. The displays were rapid serial visual presentation (RSVP) streams of differently coloured letters with the target letter defined by a specific colour. Distractors were four #s, one of the target colour, surrounding one of the non-target letters. Capture was substantially reduced when the onset of the distractor array was not unique because it was preceded by other sets of four grey # arrays in the RSVP stream. This provides unambiguous evidence that attention can be captured both exogenously and endogenously within a single task.

Status and Integrated Focal Plane Characterization of Simons Array - Cosmic Microwave Background Polarimetry Experiment

Science.gov (United States)

Roberts, Hayley; POLARBEAR

2018-06-01

Simons Array is a cosmic microwave background (CMB) polarization experiment located at 5,200 meter altitude site in the Atacama desert in Chile. The science goals of the Simons Array are to characterize the CMB B-mode signal from gravitational lensing, and search for B-mode polarization generated from inflationary gravitational waves.In 2012, POLARBEAR-1 (PB-1) began observations and the POLARBEAR team has published the first measurements of non-zero polarization B-mode polarization angular power spectrum where gravitational lensing of CMB is the dominant signal.POLARBEAR-2A (PB-2A), the first of three receivers of Simons Array, will have 7,588 polarization sensitive Transition Edge Sensor (TES) bolometers with frequencies 90 GHz and 150 GHz. This represents a factor of 6 increase in detector count compared to PB-1. Once Simons Array is fully deployed, the focal plane array will consist 22,764 TES bolometers across 90 GHz, 150 GHz, 220 GHz, and 270 GHz with a projected instantaneous sensitivity of 2.5 µK√s. Here we present the status of PB-2A and characterization of the integrated focal plane to be deployed summer of 2018.

A Unified Model for Repeating and Non-repeating Fast Radio Bursts

International Nuclear Information System (INIS)

Bagchi, Manjari

2017-01-01

The model that fast radio bursts (FRBs) are caused by plunges of asteroids onto neutron stars can explain both repeating and non-repeating bursts. If a neutron star passes through an asteroid belt around another star, there would be a series of bursts caused by a series of asteroid impacts. Moreover, the neutron star would cross the same belt repetitively if it were in a binary with the star hosting the asteroid belt, leading to a repeated series of bursts. I explore the properties of neutron star binaries that could lead to the only known repeating FRB so far (FRB121102). In this model, the next two epochs of bursts are expected around 2017 February 27 and 2017 December 18. On the other hand, if the asteroid belt is located around the neutron star itself, then a chance fall of an asteroid from that belt onto the neutron star would lead to a non-repeating burst. Even a neutron star grazing an asteroid belt can lead to a non-repeating burst caused by just one asteroid plunge during the grazing. This is possible even when the neutron star is in a binary with the asteroid-hosting star, if the belt and the neutron star orbit are non-coplanar.

A Unified Model for Repeating and Non-repeating Fast Radio Bursts

Energy Technology Data Exchange (ETDEWEB)

Bagchi, Manjari, E-mail: manjari@imsc.res.in [The Institute of Mathematical Sciences (IMSc-HBNI), 4th Cross Road, CIT Campus, Taramani, Chennai 600113 (India)

2017-04-01

The model that fast radio bursts (FRBs) are caused by plunges of asteroids onto neutron stars can explain both repeating and non-repeating bursts. If a neutron star passes through an asteroid belt around another star, there would be a series of bursts caused by a series of asteroid impacts. Moreover, the neutron star would cross the same belt repetitively if it were in a binary with the star hosting the asteroid belt, leading to a repeated series of bursts. I explore the properties of neutron star binaries that could lead to the only known repeating FRB so far (FRB121102). In this model, the next two epochs of bursts are expected around 2017 February 27 and 2017 December 18. On the other hand, if the asteroid belt is located around the neutron star itself, then a chance fall of an asteroid from that belt onto the neutron star would lead to a non-repeating burst. Even a neutron star grazing an asteroid belt can lead to a non-repeating burst caused by just one asteroid plunge during the grazing. This is possible even when the neutron star is in a binary with the asteroid-hosting star, if the belt and the neutron star orbit are non-coplanar.

Balancing energetic and cognitive resources: memory use during search depends on the orienting effector.

Science.gov (United States)

Solman, Grayden J F; Kingstone, Alan

2014-09-01

Search outside the laboratory involves tradeoffs among a variety of internal and external exploratory processes. Here we examine the conditions under which item specific memory from prior exposures to a search array is used to guide attention during search. We extend the hypothesis that memory use increases as perceptual search becomes more difficult by turning to an ecologically important type of search difficulty - energetic cost. Using optical motion tracking, we introduce a novel head-contingent display system, which enables the direct comparison of search using head movements and search using eye movements. Consistent with the increased energetic cost of turning the head to orient attention, we discover greater use of memory in head-contingent versus eye-contingent search, as reflected in both timing and orienting metrics. Our results extend theories of memory use in search to encompass embodied factors, and highlight the importance of accounting for the costs and constraints of the specific motor groups used in a given task when evaluating cognitive effects. Copyright © 2014 Elsevier B.V. All rights reserved.

Repeatability of Cryogenic Multilayer Insulation

Science.gov (United States)

Johnson, W. L.; Vanderlaan, M.; Wood, J. J.; Rhys, N. O.; Guo, W.; Van Sciver, S.; Chato, D. J.

2017-12-01

Due to the variety of requirements across aerospace platforms, and one off projects, the repeatability of cryogenic multilayer insulation (MLI) has never been fully established. The objective of this test program is to provide a more basic understanding of the thermal performance repeatability of MLI systems that are applicable to large scale tanks. There are several different types of repeatability that can be accounted for: these include repeatability between identical blankets, repeatability of installation of the same blanket, and repeatability of a test apparatus. The focus of the work in this report is on the first two types of repeatability. Statistically, repeatability can mean many different things. In simplest form, it refers to the range of performance that a population exhibits and the average of the population. However, as more and more identical components are made (i.e. the population of concern grows), the simple range morphs into a standard deviation from an average performance. Initial repeatability testing on MLI blankets has been completed at Florida State University. Repeatability of five Glenn Research Center (GRC) provided coupons with 25 layers was shown to be +/- 8.4% whereas repeatability of repeatedly installing a single coupon was shown to be +/- 8.0%. A second group of 10 coupons has been fabricated by Yetispace and tested by Florida State University, the repeatability between coupons has been shown to be +/- 15-25%. Based on detailed statistical analysis, the data has been shown to be statistically significant.

WD-repeat instability and diversification of the Podospora anserina hnwd non-self recognition gene family.

Science.gov (United States)

Chevanne, Damien; Saupe, Sven J; Clavé, Corinne; Paoletti, Mathieu

2010-05-06

Genes involved in non-self recognition and host defence are typically capable of rapid diversification and exploit specialized genetic mechanism to that end. Fungi display a non-self recognition phenomenon termed heterokaryon incompatibility that operates when cells of unlike genotype fuse and leads to the cell death of the fusion cell. In the fungus Podospora anserina, three genes controlling this allorecognition process het-d, het-e and het-r are paralogs belonging to the same hnwd gene family. HNWD proteins are STAND proteins (signal transduction NTPase with multiple domains) that display a WD-repeat domain controlling recognition specificity. Based on genomic sequence analysis of different P. anserina isolates, it was established that repeat regions of all members of the gene family are extremely polymorphic and undergoing concerted evolution arguing for frequent recombination within and between family members. Herein, we directly analyzed the genetic instability and diversification of this allorecognition gene family. We have constituted a collection of 143 spontaneous mutants of the het-R (HNWD2) and het-E (hnwd5) genes with altered recognition specificities. The vast majority of the mutants present rearrangements in the repeat arrays with deletions, duplications and other modifications as well as creation of novel repeat unit variants. We investigate the extreme genetic instability of these genes and provide a direct illustration of the diversification strategy of this eukaryotic allorecognition gene family.

SNP Arrays

Directory of Open Access Journals (Sweden)

Jari Louhelainen

2016-10-01

Full Text Available The papers published in this Special Issue “SNP arrays” (Single Nucleotide Polymorphism Arrays focus on several perspectives associated with arrays of this type. The range of papers vary from a case report to reviews, thereby targeting wider audiences working in this field. The research focus of SNP arrays is often human cancers but this Issue expands that focus to include areas such as rare conditions, animal breeding and bioinformatics tools. Given the limited scope, the spectrum of papers is nothing short of remarkable and even from a technical point of view these papers will contribute to the field at a general level. Three of the papers published in this Special Issue focus on the use of various SNP array approaches in the analysis of three different cancer types. Two of the papers concentrate on two very different rare conditions, applying the SNP arrays slightly differently. Finally, two other papers evaluate the use of the SNP arrays in the context of genetic analysis of livestock. The findings reported in these papers help to close gaps in the current literature and also to give guidelines for future applications of SNP arrays.

A novel method to design sparse linear arrays for ultrasonic phased array.

Science.gov (United States)

Yang, Ping; Chen, Bin; Shi, Ke-Ren

2006-12-22

In ultrasonic phased array testing, a sparse array can increase the resolution by enlarging the aperture without adding system complexity. Designing a sparse array involves choosing the best or a better configuration from a large number of candidate arrays. We firstly designed sparse arrays by using a genetic algorithm, but found that the arrays have poor performance and poor consistency. So, a method based on the Minimum Redundancy Linear Array was then adopted. Some elements are determined by the minimum-redundancy array firstly in order to ensure spatial resolution and then a genetic algorithm is used to optimize the remaining elements. Sparse arrays designed by this method have much better performance and consistency compared to the arrays designed only by a genetic algorithm. Both simulation and experiment confirm the effectiveness.

The influence of cognitive load on spatial search performance.

Science.gov (United States)

Longstaffe, Kate A; Hood, Bruce M; Gilchrist, Iain D

2014-01-01

During search, executive function enables individuals to direct attention to potential targets, remember locations visited, and inhibit distracting information. In the present study, we investigated these executive processes in large-scale search. In our tasks, participants searched a room containing an array of illuminated locations embedded in the floor. The participants' task was to press the switches at the illuminated locations on the floor so as to locate a target that changed color when pressed. The perceptual salience of the search locations was manipulated by having some locations flashing and some static. Participants were more likely to search at flashing locations, even when they were explicitly informed that the target was equally likely to be at any location. In large-scale search, attention was captured by the perceptual salience of the flashing lights, leading to a bias to explore these targets. Despite this failure of inhibition, participants were able to restrict returns to previously visited locations, a measure of spatial memory performance. Participants were more able to inhibit exploration to flashing locations when they were not required to remember which locations had previously been visited. A concurrent digit-span memory task further disrupted inhibition during search, as did a concurrent auditory attention task. These experiments extend a load theory of attention to large-scale search, which relies on egocentric representations of space. High cognitive load on working memory leads to increased distractor interference, providing evidence for distinct roles for the executive subprocesses of memory and inhibition during large-scale search.

Deployment Repeatability

Science.gov (United States)

2016-04-01

evaluating the deployment repeatability builds upon the testing or analysis of deployment kinematics (Chapter 6) and adds repetition. Introduction...material yield or failure during a test. For the purposes of this chapter, zero shift will refer to permanent changes in the structure, while reversible ...the content of other chapters in this book: Gravity Compensation (Chapter 4) and Deployment Kinematics and Dynamics (Chapter 6). Repeating the

Superresolution with Seismic Arrays using Empirical Matched Field Processing

Energy Technology Data Exchange (ETDEWEB)

Harris, D B; Kvaerna, T

2010-03-24

Scattering and refraction of seismic waves can be exploited with empirical matched field processing of array observations to distinguish sources separated by much less than the classical resolution limit. To describe this effect, we use the term 'superresolution', a term widely used in the optics and signal processing literature to denote systems that break the diffraction limit. We illustrate superresolution with Pn signals recorded by the ARCES array in northern Norway, using them to identify the origins with 98.2% accuracy of 549 explosions conducted by closely-spaced mines in northwest Russia. The mines are observed at 340-410 kilometers range and are separated by as little as 3 kilometers. When viewed from ARCES many are separated by just tenths of a degree in azimuth. This classification performance results from an adaptation to transient seismic signals of techniques developed in underwater acoustics for localization of continuous sound sources. Matched field processing is a potential competitor to frequency-wavenumber and waveform correlation methods currently used for event detection, classification and location. It operates by capturing the spatial structure of wavefields incident from a particular source in a series of narrow frequency bands. In the rich seismic scattering environment, closely-spaced sources far from the observing array nonetheless produce distinct wavefield amplitude and phase patterns across the small array aperture. With observations of repeating events, these patterns can be calibrated over a wide band of frequencies (e.g. 2.5-12.5 Hertz) for use in a power estimation technique similar to frequency-wavenumber analysis. The calibrations enable coherent processing at high frequencies at which wavefields normally are considered incoherent under a plane wave model.

A fault-tolerant small world topology control model in ad hoc networks for search and rescue

Science.gov (United States)

Tan, Mian; Fang, Ling; Wu, Yue; Zhang, Bo; Chang, Bowen; Holme, Petter; Zhao, Jing

2018-02-01

Due to their self-organized, multi-hop and distributed characteristics, ad hoc networks are useful in search and rescue. Topology control models need to be designed for energy-efficient, robust and fast communication in ad hoc networks. This paper proposes a topology control model which specializes for search and rescue-Compensation Small World-Repeated Game (CSWRG)-which integrates mobility models, constructing small world networks and a game-theoretic approach to the allocation of resources. Simulation results show that our mobility models can enhance the communication performance of the constructed small-world networks. Our strategy, based on repeated game, can suppress selfish behavior and compensate agents that encounter selfish or faulty neighbors. This model could be useful for the design of ad hoc communication networks.

Reconfigurable multiport EPON repeater

Science.gov (United States)

Oishi, Masayuki; Inohara, Ryo; Agata, Akira; Horiuchi, Yukio

2009-11-01

An extended reach EPON repeater is one of the solutions to effectively expand FTTH service areas. In this paper, we propose a reconfigurable multi-port EPON repeater for effective accommodation of multiple ODNs with a single OLT line card. The proposed repeater, which has multi-ports in both OLT and ODN sides, consists of TRs, BTRs with the CDR function and a reconfigurable electrical matrix switch, can accommodate multiple ODNs to a single OLT line card by controlling the connection of the matrix switch. Although conventional EPON repeaters require full OLT line cards to accommodate subscribers from the initial installation stage, the proposed repeater can dramatically reduce the number of required line cards especially when the number of subscribers is less than a half of the maximum registerable users per OLT. Numerical calculation results show that the extended reach EPON system with the proposed EPON repeater can save 17.5% of the initial installation cost compared with a conventional repeater, and can be less expensive than conventional systems up to the maximum subscribers especially when the percentage of ODNs in lightly-populated areas is higher.

Search asymmetry and eye movements in infants and adults.

Science.gov (United States)

Adler, Scott A; Gallego, Pamela

2014-08-01

Search asymmetry is characterized by the detection of a feature-present target amidst feature-absent distractors being efficient and unaffected by the number of distractors, whereas detection of a feature-absent target amidst feature-present distractors is typically inefficient and affected by the number of distractors. Although studies have attempted to investigate this phenomenon with infants (e.g., Adler, Inslicht, Rovee-Collier, & Gerhardstein in Infant Behavioral Development, 21, 253-272, 1998; Colombo, Mitchell, Coldren, & Atwater in Journal of Experimental Psychology: Learning, Memory and Cognition, 19, 98-109, 1990), due to methodological limitations, their findings have been unable to definitively establish the development of visual search mechanisms in infants. The present study assessed eye movements as a means to examine an asymmetry in responding to feature-present versus feature-absent targets in 3-month-olds, relative to adults. Saccade latencies to localize a target (or a distractor, as in the homogeneous conditions) were measured as infants and adults randomly viewed feature-present (R among Ps), feature-absent (P among Rs), and homogeneous (either all Rs or all Ps) arrays at set sizes of 1, 3, 5, and 8. Results indicated that neither infants' nor adults' saccade latencies to localize the target in the feature-present arrays were affected by increasing set sizes, suggesting that localization of the target was efficient. In contrast, saccade latencies to localize the target in the feature-absent arrays increased with increasing set sizes for both infants and adults, suggesting an inefficient localization. These findings indicate that infants exhibit an asymmetry consistent with that found with adults, providing support for functional bottom-up selective attention mechanisms in early infancy.

Feature Selection for Chemical Sensor Arrays Using Mutual Information

Science.gov (United States)

Wang, X. Rosalind; Lizier, Joseph T.; Nowotny, Thomas; Berna, Amalia Z.; Prokopenko, Mikhail; Trowell, Stephen C.

2014-01-01

We address the problem of feature selection for classifying a diverse set of chemicals using an array of metal oxide sensors. Our aim is to evaluate a filter approach to feature selection with reference to previous work, which used a wrapper approach on the same data set, and established best features and upper bounds on classification performance. We selected feature sets that exhibit the maximal mutual information with the identity of the chemicals. The selected features closely match those found to perform well in the previous study using a wrapper approach to conduct an exhaustive search of all permitted feature combinations. By comparing the classification performance of support vector machines (using features selected by mutual information) with the performance observed in the previous study, we found that while our approach does not always give the maximum possible classification performance, it always selects features that achieve classification performance approaching the optimum obtained by exhaustive search. We performed further classification using the selected feature set with some common classifiers and found that, for the selected features, Bayesian Networks gave the best performance. Finally, we compared the observed classification performances with the performance of classifiers using randomly selected features. We found that the selected features consistently outperformed randomly selected features for all tested classifiers. The mutual information filter approach is therefore a computationally efficient method for selecting near optimal features for chemical sensor arrays. PMID:24595058

Dynamic micromagnetic simulation of the magnetic spectrum of permalloy nanodot array with vortex state

Energy Technology Data Exchange (ETDEWEB)

Peng, Y. [College of Physics and Electronic Engineering, Sichuan Normal University, Chengdu 610066 (China); College of Materials Science and Engineering, Beijing University of Technology, Beijing 100124 (China); Zhao, G.P., E-mail: zhaogp@uestc.edu.cn [College of Physics and Electronic Engineering, Sichuan Normal University, Chengdu 610066 (China); Morvan, F.J.; Wu, S.Q. [College of Physics and Electronic Engineering, Sichuan Normal University, Chengdu 610066 (China); Yue, M. [College of Materials Science and Engineering, Beijing University of Technology, Beijing 100124 (China)

2017-01-15

Due to its potential applications in high-density magnetic storage and spin electronic devices, the ferromagnetic resonance absorption phenomenon has recently drawn much attention. By studying the influence of different materials with various shapes on this phenomenon, the new understandings gained could lead to other applications in the future. In this paper, dynamic magnetic susceptibilities of the vortex state in permalloy nanodot arrays have been investigated using a three-dimensional object oriented micromagnetic framework (OOMMF) code with a two-dimensional periodic boundary condition (2D-PBC) extension and compared with those of a single dot carefully. The resonance mode is excited in the vortex state of nanodot arrays by the microwave magnetic field perpendicular to the dot plane. In this case only radially symmetric spin wave modes can be excited. The influence of the geometric parameters on the resonance frequency has been studied systemically, including the dot radius, the number of repeating elements, and the dot distance. One can see that the resonance peak of the dot array is higher than that of a single dot because of the induced stronger magnetostatic coupling. A critical dot distance exists at which the dot array may be treated as a single dot. There is only one resonance peak for both the dot array and the single dot, as the radius changes. - Highlights: • Resonance peak of the dot array is higher than that of a single dot because of the induced stronger magnetostatic coupling. • A critical dot distance exists at which the dot array may be treated as a single dot. • There is only one resonance peak for both the dot array and the single dot, as the radius changes.

Dynamic micromagnetic simulation of the magnetic spectrum of permalloy nanodot array with vortex state

International Nuclear Information System (INIS)

Peng, Y.; Zhao, G.P.; Morvan, F.J.; Wu, S.Q.; Yue, M.

2017-01-01

Due to its potential applications in high-density magnetic storage and spin electronic devices, the ferromagnetic resonance absorption phenomenon has recently drawn much attention. By studying the influence of different materials with various shapes on this phenomenon, the new understandings gained could lead to other applications in the future. In this paper, dynamic magnetic susceptibilities of the vortex state in permalloy nanodot arrays have been investigated using a three-dimensional object oriented micromagnetic framework (OOMMF) code with a two-dimensional periodic boundary condition (2D-PBC) extension and compared with those of a single dot carefully. The resonance mode is excited in the vortex state of nanodot arrays by the microwave magnetic field perpendicular to the dot plane. In this case only radially symmetric spin wave modes can be excited. The influence of the geometric parameters on the resonance frequency has been studied systemically, including the dot radius, the number of repeating elements, and the dot distance. One can see that the resonance peak of the dot array is higher than that of a single dot because of the induced stronger magnetostatic coupling. A critical dot distance exists at which the dot array may be treated as a single dot. There is only one resonance peak for both the dot array and the single dot, as the radius changes. - Highlights: • Resonance peak of the dot array is higher than that of a single dot because of the induced stronger magnetostatic coupling. • A critical dot distance exists at which the dot array may be treated as a single dot. • There is only one resonance peak for both the dot array and the single dot, as the radius changes.

MICA: desktop software for comprehensive searching of DNA databases

Directory of Open Access Journals (Sweden)

Glick Benjamin S

2006-10-01

Full Text Available Abstract Background Molecular biologists work with DNA databases that often include entire genomes. A common requirement is to search a DNA database to find exact matches for a nondegenerate or partially degenerate query. The software programs available for such purposes are normally designed to run on remote servers, but an appealing alternative is to work with DNA databases stored on local computers. We describe a desktop software program termed MICA (K-Mer Indexing with Compact Arrays that allows large DNA databases to be searched efficiently using very little memory. Results MICA rapidly indexes a DNA database. On a Macintosh G5 computer, the complete human genome could be indexed in about 5 minutes. The indexing algorithm recognizes all 15 characters of the DNA alphabet and fully captures the information in any DNA sequence, yet for a typical sequence of length L, the index occupies only about 2L bytes. The index can be searched to return a complete list of exact matches for a nondegenerate or partially degenerate query of any length. A typical search of a long DNA sequence involves reading only a small fraction of the index into memory. As a result, searches are fast even when the available RAM is limited. Conclusion MICA is suitable as a search engine for desktop DNA analysis software.

Status of dark matter searches in the boulby mine

CERN Document Server

Hart, S P

2002-01-01

We present the current status and future plans for dark matter searches in the Boulby Mine. A 50 kg array of NaI(Tl) crystals is under construction and a method of suppressing anomalous, fast signals in such detectors is described. Liquid Xe based detectors, with improved background rejection, are under development. The first of these, ZEPLIN I, is already deployed and uses pulse shape discrimination. ZEPLIN II and III measure the ratio of ionisation to scintillation by use of an electric field to extract ionisation from the liquid into a gas phase. Finally a low pressure gas drift chamber with directional sensitivity has been installed, larger versions of which will enable a search for correlations between any WIMP signal and galactic motion.

Low Frequency Space Array

International Nuclear Information System (INIS)

Dennison, B.; Weiler, K.W.; Johnston, K.J.

1987-01-01

The Low Frequency Space Array (LFSA) is a conceptual mission to survey the entire sky and to image individual sources at frequencies between 1.5 and 26 MHz, a frequency range over which the earth's ionosphere transmits poorly or not at all. With high resolution, high sensitivity observations, a new window will be opened in the electromagnetic spectrum for astronomical investigation. Also, extending observations down to such low frequencies will bring astronomy to the fundamental limit below which the galaxy becomes optically thick due to free-free absorption. A number of major scientific goals can be pursued with such a mission, including mapping galactic emission and absorption, studies of individual source spectra in a frequency range where a number of important processes may play a role, high resolution imaging of extended sources, localization of the impulsive emission from Jupiter, and a search for coherent emission processes. 19 references

Search for emission of ultra high energy radiation from active galactic nuclei

International Nuclear Information System (INIS)

1993-01-01

A search for emission of ultra-high energy gamma radiation from 13 active galactic nuclei that were detected by EGRET, using the CYGNUS extensive air-shower array, is described. The data set has been searched for continuous emission, emission on the time scale of one week, and for on the time scale of out day. No evidence for emission from any of the AGN on any of the time scales examined was found. The 90% C.L. upper limit to the continuous flux from Mrk 421 above 50 TeV is 7.5 x 10 -14 cm -2 s -1

SpolSimilaritySearch - A web tool to compare and search similarities between spoligotypes of Mycobacterium tuberculosis complex.

Science.gov (United States)

Couvin, David; Zozio, Thierry; Rastogi, Nalin

2017-07-01

Spoligotyping is one of the most commonly used polymerase chain reaction (PCR)-based methods for identification and study of genetic diversity of Mycobacterium tuberculosis complex (MTBC). Despite its known limitations if used alone, the methodology is particularly useful when used in combination with other methods such as mycobacterial interspersed repetitive units - variable number of tandem DNA repeats (MIRU-VNTRs). At a worldwide scale, spoligotyping has allowed identification of information on 103,856 MTBC isolates (corresponding to 98049 clustered strains plus 5807 unique isolates from 169 countries of patient origin) contained within the SITVIT2 proprietary database of the Institut Pasteur de la Guadeloupe. The SpolSimilaritySearch web-tool described herein (available at: http://www.pasteur-guadeloupe.fr:8081/SpolSimilaritySearch) incorporates a similarity search algorithm allowing users to get a complete overview of similar spoligotype patterns (with information on presence or absence of 43 spacers) in the aforementioned worldwide database. This tool allows one to analyze spread and evolutionary patterns of MTBC by comparing similar spoligotype patterns, to distinguish between widespread, specific and/or confined patterns, as well as to pinpoint patterns with large deleted blocks, which play an intriguing role in the genetic epidemiology of M. tuberculosis. Finally, the SpolSimilaritySearch tool also provides with the country distribution patterns for each queried spoligotype. Copyright © 2017 Elsevier Ltd. All rights reserved.

Dermatological image search engines on the Internet: do they work?

Science.gov (United States)

Cutrone, M; Grimalt, R

2007-02-01

Atlases on CD-ROM first substituted the use of paediatric dermatology atlases printed on paper. This permitted a faster search and a practical comparison of differential diagnoses. The third step in the evolution of clinical atlases was the onset of the online atlas. Many doctors now use the Internet image search engines to obtain clinical images directly. The aim of this study was to test the reliability of the image search engines compared to the online atlases. We tested seven Internet image search engines with three paediatric dermatology diseases. In general, the service offered by the search engines is good, and continues to be free of charge. The coincidence between what we searched for and what we found was generally excellent, and contained no advertisements. Most Internet search engines provided similar results but some were more user friendly than others. It is not necessary to repeat the same research with Picsearch, Lycos and MSN, as the response would be the same; there is a possibility that they might share software. Image search engines are a useful, free and precise method to obtain paediatric dermatology images for teaching purposes. There is still the matter of copyright to be resolved. What are the legal uses of these 'free' images? How do we define 'teaching purposes'? New watermark methods and encrypted electronic signatures might solve these problems and answer these questions.

Time-Dependent Searches for Point Sources of Neutrinos with the 40-String and 22-String Configurations of IceCube

Science.gov (United States)

Stamatikos, M.

2012-01-01

This paper presents four searches for flaring sources of neutrinos using the IceCube neutrino telescope. For the first time, a search is performed over the entire parameter space of energy, direction and time with sensitivity to neutrino flares lasting between 20 microseconds and a year duration from astrophysical sources. Searches which integrate over time are less sensitive to flares because they are affected by a larger background of atmospheric neutrinos and muons that can be reduced by the use of additional timing information. Flaring sources considered here, such as active galactic nuclei, soft gamma ray repeaters and gamma-ray bursts, are promising candidate neutrino emitters. Two searches are untriggered in the sense that they look for any possible flare in the entire sky and from a predefined catalog of sources from which photon flares have been recorded. The other two searches are triggered by multi-wavelength information on flares from blazars and from a soft gamma-ray repeater. One triggered search uses lightcurves from Fermi-LAT which provides continuous monitoring. A second triggered search uses information where the flux states have been measured only for short periods of time near the flares. The untriggered searches use data taken by 40 strings of IceCube between Apr 5, 2008 and May 20, 2009. The triggered searches also use data taken by the 22-string configuration of IceCube operating between May 31, 2007 and Apr 5, 2008. The results from all four searches are compatible with a fluctuation of the background.

Sweet Spot Control of 1:2 Array Antenna using A Modified Genetic Algorithm

Directory of Open Access Journals (Sweden)

Kyo-Hwan HYUN

2007-10-01

Full Text Available This paper presents a novel scheme that quickly searches for the sweet spot of 1:2 array antennas, and locks on to it for high-speed millimeter wavelength transmissions, when communications to another antenna array are disconnected. The proposed method utilizes a modified genetic algorithm, which selects a superior initial group through preprocessing in order to solve the local solution in a genetic algorithm. TDD (Time Division Duplex is utilized as the transfer method and data controller for the antenna. Once the initial communication is completed for the specific number of individuals, no longer antenna's data will be transmitted until each station processes GA in order to produce the next generation. After reproduction, individuals of the next generation become the data, and communication between each station is made again. The simulation results of 1:1, 1:2 array antennas, and experiment results of 1:1 array antenna confirmed the efficiency of the proposed method. The bit of gene is each 8bit, 16bit and 16bit split gene. 16bit split has similar performance as 16bit gene, but the gene of antenna is 8bit.

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.

Science.gov (United States)

Couvin, David; Bernheim, Aude; Toffano-Nioche, Claire; Touchon, Marie; Michalik, Juraj; Néron, Bertrand; C Rocha, Eduardo P; Vergnaud, Gilles; Gautheret, Daniel; Pourcel, Christine

2018-05-22

CRISPR (clustered regularly interspaced short palindromic repeats) arrays and their associated (Cas) proteins confer bacteria and archaea adaptive immunity against exogenous mobile genetic elements, such as phages or plasmids. CRISPRCasFinder allows the identification of both CRISPR arrays and Cas proteins. The program includes: (i) an improved CRISPR array detection tool facilitating expert validation based on a rating system, (ii) prediction of CRISPR orientation and (iii) a Cas protein detection and typing tool updated to match the latest classification scheme of these systems. CRISPRCasFinder can either be used online or as a standalone tool compatible with Linux operating system. All third-party software packages employed by the program are freely available. CRISPRCasFinder is available at https://crisprcas.i2bc.paris-saclay.fr.

SANSparallel: interactive homology search against Uniprot.

Science.gov (United States)

Somervuo, Panu; Holm, Liisa

2015-07-01

Proteins evolve by mutations and natural selection. The network of sequence similarities is a rich source for mining homologous relationships that inform on protein structure and function. There are many servers available to browse the network of homology relationships but one has to wait up to a minute for results. The SANSparallel webserver provides protein sequence database searches with immediate response and professional alignment visualization by third-party software. The output is a list, pairwise alignment or stacked alignment of sequence-similar proteins from Uniprot, UniRef90/50, Swissprot or Protein Data Bank. The stacked alignments are viewed in Jalview or as sequence logos. The database search uses the suffix array neighborhood search (SANS) method, which has been re-implemented as a client-server, improved and parallelized. The method is extremely fast and as sensitive as BLAST above 50% sequence identity. Benchmarks show that the method is highly competitive compared to previously published fast database search programs: UBLAST, DIAMOND, LAST, LAMBDA, RAPSEARCH2 and BLAT. The web server can be accessed interactively or programmatically at http://ekhidna2.biocenter.helsinki.fi/cgi-bin/sans/sans.cgi. It can be used to make protein functional annotation pipelines more efficient, and it is useful in interactive exploration of the detailed evidence supporting the annotation of particular proteins of interest. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

Linear Array Ultrasonic Testing Of A Thick Concrete Specimens For Non-Destructive Evaluation

Energy Technology Data Exchange (ETDEWEB)

Clayton, Dwight A. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Khazanovich, Lev [Univ. of Minnesota, Minneapolis, MN (United States); Zammerachi, Mattia [Univ. of Minnesota, Minneapolis, MN (United States); Ezell, N. Dianne Bull [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

2017-04-01

The University of Minnesota and Oak Ridge National Laboratory are collaborating on the design and construction of a concrete specimen with sufficient reinforcement density and cross-sectional size to represent a light water reactor (LWR) containment wall with various defects. The preliminary analysis of the collected data using extended synthetic aperture focussin technique (SAFT) reconstruction indicated a great potential of the ultrasound array technology for locating relatively shallow distresses. However, the resolution and reliability of the analysis is inversely proportional to the defect depth and the amount of reinforcement between the measurement point and the defect location. The objective of this round of testing is to evaluate repeatability of the obtained reconstructions from measurements with different frequencies as well as to examine the effect of the duration of the sending ultrasound signal on the resulting reconstructions. Two series of testing are performed in this study. The objective of the first series is to evaluate repeatability of the measurements and resulting reconstructed images. The measurements use three center frequencies. Five measurements are performed at each location with and without lifting the device. The analysis of the collected data suggested that a linear array ultrasound system can produce reliably repeatable reconstructions using 50 kHz signals for relatively shallow depths (less than 0.5 m). However, for reconstructions at the greater depths the use of lower frequency and/or signal filtering to reduce the effect of signal noise may be required. The objective of the second series of testing is to obtain measurements with various impulse signal durations. The entire grid on the smooth surface is tested with four different various impulse signal durations. An analysis of the resulting extended SAFT reconstructions suggested that Kirchhoff-based migration leads to easier interpreting reconstructions when shorter duration

An overview of current experiments in search of proton decay

International Nuclear Information System (INIS)

Goldhaber, M.; Sulak, L.R.

1981-01-01

Detectors being used in current experiments dedicated to the search for proton decay, fall into two classes, totally active water Cherenkov detectors with light collected by phototubes, and sampling calorimeters with particle ionization tracked by gas tube arrays. An example of each type is considered in detail, the features of other detectors in the two classes are pointed out and compared with those of the same type. (U.K.)

Coupling in reflector arrays

DEFF Research Database (Denmark)

Appel-Hansen, Jørgen

1968-01-01

In order to reduce the space occupied by a reflector array, it is desirable to arrange the array antennas as close to each other as possible; however, in this case coupling between the array antennas will reduce the reflecting properties of the reflector array. The purpose of the present communic......In order to reduce the space occupied by a reflector array, it is desirable to arrange the array antennas as close to each other as possible; however, in this case coupling between the array antennas will reduce the reflecting properties of the reflector array. The purpose of the present...

Projection neuron circuits resolved using correlative array tomography

Directory of Open Access Journals (Sweden)

Daniele eOberti

2011-04-01

Full Text Available Assessment of three-dimensional morphological structure and synaptic connectivity is essential for a comprehensive understanding of neural processes controlling behavior. Different microscopy approaches have been proposed based on light microcopy (LM, electron microscopy (EM, or a combination of both. Correlative array tomography (CAT is a technique in which arrays of ultrathin serial sections are repeatedly stained with fluorescent antibodies against synaptic molecules and neurotransmitters and imaged with LM and EM (Micheva and Smith, 2007. The utility of this correlative approach is limited by the ability to preserve fluorescence and antigenicity on the one hand, and EM tissue ultrastructure on the other. We demonstrate tissue staining and fixation protocols and a workflow that yield an excellent compromise between these multimodal imaging constraints. We adapt CAT for the study of projection neurons between different vocal brain regions in the songbird. We inject fluorescent tracers of different colors into afferent and efferent areas of HVC in zebra finches. Fluorescence of some tracers is lost during tissue preparation but recovered using anti-dye antibodies. Synapses are identified in EM imagery based on their morphology and ultrastructure and classified into projection neuron type based on fluorescence signal. Our adaptation of array tomography, involving the use of fluorescent tracers and heavy-metal rich staining and embedding protocols for high membrane contrast in EM will be useful for research aimed at statistically describing connectivity between different projection neuron types and for elucidating how sensory signals are routed in the brain and transformed into a meaningful motor output.

The Cherenkov Telescope Array For Very High-Energy Astrophysics

Science.gov (United States)

Kaaret, Philip

2015-08-01

The field of very high energy (VHE) astrophysics had been revolutionized by the results from ground-based gamma-ray telescopes, including the current imaging atmospheric Cherenkov telescope (IACT) arrays: HESS, MAGIC and VERITAS. A worldwide consortium of scientists from 29 countries has formed to propose the Cherenkov Telescope Array (CTA) that will capitalize on the power of this technique to greatly expand the scientific reach of ground-based gamma-ray telescopes. CTA science will include key topics such as the origin of cosmic rays and cosmic particle acceleration, understanding extreme environments in regions close to neutron stars and black holes, and exploring physics frontiers through, e.g., the search for WIMP dark matter, axion-like particles and Lorentz invariance violation. CTA is envisioned to consist of two large arrays of Cherenkov telescopes, one in the southern hemisphere and one in the north. Each array will contain telescopes of different sizes to provide a balance between cost and array performance over an energy range from below 100 GeV to above 100 TeV. Compared to the existing IACT arrays, CTA will have substantially better angular resolution and energy resolution, will cover a much wider energy range, and will have up to an order of magnitude better sensitivity. CTA will also be operated as an open observatory and high-level CTA data will be placed into the public domain; these aspects will enable broad participation in CTA science from the worldwide scientific community to fully capitalize on CTA's potential. This talk will: 1) review the scientific motivation and capabilities of CTA, 2) provide an overview of the technical design and the status of prototype development, and 3) summarize the current status of the project in terms of its proposed organization and timeline. The plans for access to CTA data and opportunities to propose for CTA observing time will be highlighed.Presented on behalf of the CTA Consortium.

Expansion of protein domain repeats.

Directory of Open Access Journals (Sweden)

Asa K Björklund

2006-08-01

Full Text Available Many proteins, especially in eukaryotes, contain tandem repeats of several domains from the same family. These repeats have a variety of binding properties and are involved in protein-protein interactions as well as binding to other ligands such as DNA and RNA. The rapid expansion of protein domain repeats is assumed to have evolved through internal tandem duplications. However, the exact mechanisms behind these tandem duplications are not well-understood. Here, we have studied the evolution, function, protein structure, gene structure, and phylogenetic distribution of domain repeats. For this purpose we have assigned Pfam-A domain families to 24 proteomes with more sensitive domain assignments in the repeat regions. These assignments confirmed previous findings that eukaryotes, and in particular vertebrates, contain a much higher fraction of proteins with repeats compared with prokaryotes. The internal sequence similarity in each protein revealed that the domain repeats are often expanded through duplications of several domains at a time, while the duplication of one domain is less common. Many of the repeats appear to have been duplicated in the middle of the repeat region. This is in strong contrast to the evolution of other proteins that mainly works through additions of single domains at either terminus. Further, we found that some domain families show distinct duplication patterns, e.g., nebulin domains have mainly been expanded with a unit of seven domains at a time, while duplications of other domain families involve varying numbers of domains. Finally, no common mechanism for the expansion of all repeats could be detected. We found that the duplication patterns show no dependence on the size of the domains. Further, repeat expansion in some families can possibly be explained by shuffling of exons. However, exon shuffling could not have created all repeats.

Repeating ice-earthquakes beneath David Glacier from the 2012-2015 TAMNNET array

Science.gov (United States)

Walter, J. I.; Peng, Z.; Hansen, S. E.

2017-12-01

The continent of Antarctica has approximately the same surface area as the continental United States, though we know significantly less about its underlying geology and seismic activity. In recent years, improvements in seismic instrumentation, battery technology, and field deployment practices have allowed for continuous broadband stations throughout the dark Antarctic winter. We utilize broadband seismic data from a recent experiment (TAMNNET), which was originally proposed as a structural seismology experiment, for seismic event detection. Our target is to address fundamental questions about regional-scale crustal and environmental seismicity in the study region that comprises the Transantarctic Mountain area of Victoria and Oates Land. We identify most seismicity emanating from David Glacier, upstream of the Drygalski Ice Tongue, which has been documented by several other studies. In order to improve the catalog completeness for the David Glacier area, we utilize a matched-filter technique to identify potential missing earthquakes that may not have been originally detected. This technique utilizes existing cataloged waveforms as templates to scan through continuous data and to identify repeating or nearby earthquakes. With a more robust catalog, we evaluate relative changes in icequake positions, recurrence intervals, and other first-order information. In addition, we attempt to further refine locations of other regional seismicity using a variety of methods including body and surface wave polarization, beamforming, surface wave dispersion, and other seismological methods. This project highlights the usefulness of archiving raw datasets (i.e., passive seismic continuous data), so that researchers may apply new algorithms or techniques to test hypotheses not originally or specifically targeted by the original experimental design.

Zero-crossing detection algorithm for arrays of optical spatial filtering velocimetry sensors

DEFF Research Database (Denmark)

Jakobsen, Michael Linde; Pedersen, Finn; Hanson, Steen Grüner

2008-01-01

This paper presents a zero-crossing detection algorithm for arrays of compact low-cost optical sensors based on spatial filtering for measuring fluctuations in angular velocity of rotating solid structures. The algorithm is applicable for signals with moderate signal-to-noise ratios, and delivers...... repeating the same measurement error for each revolution of the target, and to gain high performance measurement of angular velocity. The traditional zero-crossing detection is extended by 1) inserting an appropriate band-pass filter before the zero-crossing detection, 2) measuring time periods between zero...

The fabrication of ordered arrays of exchange biased Ni/FeF2 nanostructures

International Nuclear Information System (INIS)

Kovylina, M; Labarta, A; Batlle, X; Erekhinsky, M; Schuller, I K; Morales, R

2010-01-01

The fabrication of ordered arrays of exchange biased Ni/FeF 2 nanostructures by focused ion beam lithography is reported. High quality nano-elements, with controlled removal depth and no significant re-deposition, were carved using small ion beam currents (30 pA), moderate dwell times (1 μs) and repeated passages over the same area. Two types of nanostructures were fabricated: square arrays of circular dots with diameters from 125 ± 8 to 500 ± 12 nm and periodicities ranging from 200 ± 8 to 1000 ± 12 nm, and square arrays of square antidots (207 ± 8 nm in edge length) with periodicities ranging from 300 ± 8 to 1200 ± 12 nm. The arrays were characterized using scanning ion and electron microscopy, and atomic force microscopy. The effect of the patterning on the exchange bias field (i.e., the shift in the hysteresis loop of ferromagnetic Ni due to proximity to antiferromagnetic FeF 2 ) was studied using magneto-transport measurements. These high quality nanostructures offer a unique method to address some of the open questions regarding the microscopic origin of exchange bias. This is not only of major relevance in the fabrication and miniaturization of magnetic devices but it is also one of the important proximity phenomena in nanoscience and materials science.

The leucine-rich repeat structure.

Science.gov (United States)

Bella, J; Hindle, K L; McEwan, P A; Lovell, S C

2008-08-01

The leucine-rich repeat is a widespread structural motif of 20-30 amino acids with a characteristic repetitive sequence pattern rich in leucines. Leucine-rich repeat domains are built from tandems of two or more repeats and form curved solenoid structures that are particularly suitable for protein-protein interactions. Thousands of protein sequences containing leucine-rich repeats have been identified by automatic annotation methods. Three-dimensional structures of leucine-rich repeat domains determined to date reveal a degree of structural variability that translates into the considerable functional versatility of this protein superfamily. As the essential structural principles become well established, the leucine-rich repeat architecture is emerging as an attractive framework for structural prediction and protein engineering. This review presents an update of the current understanding of leucine-rich repeat structure at the primary, secondary, tertiary and quaternary levels and discusses specific examples from recently determined three-dimensional structures.

Visual working memory simultaneously guides facilitation and inhibition during visual search.

Science.gov (United States)

Dube, Blaire; Basciano, April; Emrich, Stephen M; Al-Aidroos, Naseem

2016-07-01

During visual search, visual working memory (VWM) supports the guidance of attention in two ways: It stores the identity of the search target, facilitating the selection of matching stimuli in the search array, and it maintains a record of the distractors processed during search so that they can be inhibited. In two experiments, we investigated whether the full contents of VWM can be used to support both of these abilities simultaneously. In Experiment 1, participants completed a preview search task in which (a) a subset of search distractors appeared before the remainder of the search items, affording participants the opportunity to inhibit them, and (b) the search target varied from trial to trial, requiring the search target template to be maintained in VWM. We observed the established signature of VWM-based inhibition-reduced ability to ignore previewed distractors when the number of distractors exceeds VWM's capacity-suggesting that VWM can serve this role while also representing the target template. In Experiment 2, we replicated Experiment 1, but added to the search displays a singleton distractor that sometimes matched the color (a task-irrelevant feature) of the search target, to evaluate capture. We again observed the signature of VWM-based preview inhibition along with attentional capture by (and, thus, facilitation of) singletons matching the target template. These findings indicate that more than one VWM representation can bias attention at a time, and that these representations can separately affect selection through either facilitation or inhibition, placing constraints on existing models of the VWM-based guidance of attention.

Concurrent array-based queue

Science.gov (United States)

Heidelberger, Philip; Steinmacher-Burow, Burkhard

2015-01-06

According to one embodiment, a method for implementing an array-based queue in memory of a memory system that includes a controller includes configuring, in the memory, metadata of the array-based queue. The configuring comprises defining, in metadata, an array start location in the memory for the array-based queue, defining, in the metadata, an array size for the array-based queue, defining, in the metadata, a queue top for the array-based queue and defining, in the metadata, a queue bottom for the array-based queue. The method also includes the controller serving a request for an operation on the queue, the request providing the location in the memory of the metadata of the queue.

The energy landscapes of repeat-containing proteins: topology, cooperativity, and the folding funnels of one-dimensional architectures.

Directory of Open Access Journals (Sweden)

Diego U Ferreiro

2008-05-01

Full Text Available Repeat-proteins are made up of near repetitions of 20- to 40-amino acid stretches. These polypeptides usually fold up into non-globular, elongated architectures that are stabilized by the interactions within each repeat and those between adjacent repeats, but that lack contacts between residues distant in sequence. The inherent symmetries both in primary sequence and three-dimensional structure are reflected in a folding landscape that may be analyzed as a quasi-one-dimensional problem. We present a general description of repeat-protein energy landscapes based on a formal Ising-like treatment of the elementary interaction energetics in and between foldons, whose collective ensemble are treated as spin variables. The overall folding properties of a complete "domain" (the stability and cooperativity of the repeating array can be derived from this microscopic description. The one-dimensional nature of the model implies there are simple relations for the experimental observables: folding free-energy (DeltaG(water and the cooperativity of denaturation (m-value, which do not ordinarily apply for globular proteins. We show how the parameters for the "coarse-grained" description in terms of foldon spin variables can be extracted from more detailed folding simulations on perfectly funneled landscapes. To illustrate the ideas, we present a case-study of a family of tetratricopeptide (TPR repeat proteins and quantitatively relate the results to the experimentally observed folding transitions. Based on the dramatic effect that single point mutations exert on the experimentally observed folding behavior, we speculate that natural repeat proteins are "poised" at particular ratios of inter- and intra-element interaction energetics that allow them to readily undergo structural transitions in physiologically relevant conditions, which may be intrinsically related to their biological functions.

Time-Dependent Searches for Point Sources of Neutrinos with the 4O-String and 22-String Configurations of IceCube

Science.gov (United States)

Abbasi, R.; Abdou, Y.; Abu-Zayyad, T.; Adams, J.; Aguilar, J. A.; Ahlers, M.; Andeen, K.; Auffenberg, J.; Bai, X.; Baker, M.;

Hysteresis of magnetostructural transitions: Repeatable and non-repeatable processes

Science.gov (United States)

Provenzano, Virgil; Della Torre, Edward; Bennett, Lawrence H.; ElBidweihy, Hatem

2014-02-01

The Gd5Ge2Si2 alloy and the off-stoichiometric Ni50Mn35In15 Heusler alloy belong to a special class of metallic materials that exhibit first-order magnetostructural transitions near room temperature. The magnetic properties of this class of materials have been extensively studied due to their interesting magnetic behavior and their potential for a number of technological applications such as refrigerants for near-room-temperature magnetic refrigeration. The thermally driven first-order transitions in these materials can be field-induced in the reverse order by applying a strong enough field. The field-induced transitions are typically accompanied by the presence of large magnetic hysteresis, the characteristics of which are a complicated function of temperature, field, and magneto-thermal history. In this study we show that the virgin curve, the major loop, and sequentially measured MH loops are the results of both repeatable and non-repeatable processes, in which the starting magnetostructural state, prior to the cycling of field, plays a major role. Using the Gd5Ge2Si2 and Ni50Mn35In15 alloys, as model materials, we show that a starting single phase state results in fully repeatable processes and large magnetic hysteresis, whereas a mixed phase starting state results in non-repeatable processes and smaller hysteresis.

Hysteresis of magnetostructural transitions: Repeatable and non-repeatable processes

International Nuclear Information System (INIS)

Provenzano, Virgil; Della Torre, Edward; Bennett, Lawrence H.; ElBidweihy, Hatem

2014-01-01

The Gd 5 Ge 2 Si 2 alloy and the off-stoichiometric Ni 50 Mn 35 In 15 Heusler alloy belong to a special class of metallic materials that exhibit first-order magnetostructural transitions near room temperature. The magnetic properties of this class of materials have been extensively studied due to their interesting magnetic behavior and their potential for a number of technological applications such as refrigerants for near-room-temperature magnetic refrigeration. The thermally driven first-order transitions in these materials can be field-induced in the reverse order by applying a strong enough field. The field-induced transitions are typically accompanied by the presence of large magnetic hysteresis, the characteristics of which are a complicated function of temperature, field, and magneto-thermal history. In this study we show that the virgin curve, the major loop, and sequentially measured MH loops are the results of both repeatable and non-repeatable processes, in which the starting magnetostructural state, prior to the cycling of field, plays a major role. Using the Gd 5 Ge 2 Si 2 and Ni 50 Mn 35 In 15 alloys, as model materials, we show that a starting single phase state results in fully repeatable processes and large magnetic hysteresis, whereas a mixed phase starting state results in non-repeatable processes and smaller hysteresis

Revisiting the TALE repeat.

Science.gov (United States)

Deng, Dong; Yan, Chuangye; Wu, Jianping; Pan, Xiaojing; Yan, Nieng

2014-04-01

Transcription activator-like (TAL) effectors specifically bind to double stranded (ds) DNA through a central domain of tandem repeats. Each TAL effector (TALE) repeat comprises 33-35 amino acids and recognizes one specific DNA base through a highly variable residue at a fixed position in the repeat. Structural studies have revealed the molecular basis of DNA recognition by TALE repeats. Examination of the overall structure reveals that the basic building block of TALE protein, namely a helical hairpin, is one-helix shifted from the previously defined TALE motif. Here we wish to suggest a structure-based re-demarcation of the TALE repeat which starts with the residues that bind to the DNA backbone phosphate and concludes with the base-recognition hyper-variable residue. This new numbering system is consistent with the α-solenoid superfamily to which TALE belongs, and reflects the structural integrity of TAL effectors. In addition, it confers integral number of TALE repeats that matches the number of bound DNA bases. We then present fifteen crystal structures of engineered dHax3 variants in complex with target DNA molecules, which elucidate the structural basis for the recognition of bases adenine (A) and guanine (G) by reported or uncharacterized TALE codes. Finally, we analyzed the sequence-structure correlation of the amino acid residues within a TALE repeat. The structural analyses reported here may advance the mechanistic understanding of TALE proteins and facilitate the design of TALEN with improved affinity and specificity.

A large complement of the predicted Arabidopsis ARM repeat proteins are members of the U-box E3 ubiquitin ligase family.

Science.gov (United States)

Mudgil, Yashwanti; Shiu, Shin-Han; Stone, Sophia L; Salt, Jennifer N; Goring, Daphne R

2004-01-01

The Arabidopsis genome was searched to identify predicted proteins containing armadillo (ARM) repeats, a motif known to mediate protein-protein interactions in a number of different animal proteins. Using domain database predictions and models generated in this study, 108 Arabidopsis proteins were identified that contained a minimum of two ARM repeats with the majority of proteins containing four to eight ARM repeats. Clustering analysis showed that the 108 predicted Arabidopsis ARM repeat proteins could be divided into multiple groups with wide differences in their domain compositions and organizations. Interestingly, 41 of the 108 Arabidopsis ARM repeat proteins contained a U-box, a motif present in a family of E3 ligases, and these proteins represented the largest class of Arabidopsis ARM repeat proteins. In 14 of these U-box/ARM repeat proteins, there was also a novel conserved domain identified in the N-terminal region. Based on the phylogenetic tree, representative U-box/ARM repeat proteins were selected for further study. RNA-blot analyses revealed that these U-box/ARM proteins are expressed in a variety of tissues in Arabidopsis. In addition, the selected U-box/ARM proteins were found to be functional E3 ubiquitin ligases. Thus, these U-box/ARM proteins represent a new family of E3 ligases in Arabidopsis.

All-photonic quantum repeaters

Science.gov (United States)

Azuma, Koji; Tamaki, Kiyoshi; Lo, Hoi-Kwong

2015-01-01

Quantum communication holds promise for unconditionally secure transmission of secret messages and faithful transfer of unknown quantum states. Photons appear to be the medium of choice for quantum communication. Owing to photon losses, robust quantum communication over long lossy channels requires quantum repeaters. It is widely believed that a necessary and highly demanding requirement for quantum repeaters is the existence of matter quantum memories. Here we show that such a requirement is, in fact, unnecessary by introducing the concept of all-photonic quantum repeaters based on flying qubits. In particular, we present a protocol based on photonic cluster-state machine guns and a loss-tolerant measurement equipped with local high-speed active feedforwards. We show that, with such all-photonic quantum repeaters, the communication efficiency scales polynomially with the channel distance. Our result paves a new route towards quantum repeaters with efficient single-photon sources rather than matter quantum memories. PMID:25873153

Fabrication of corner cube array retro-reflective structure with DLP-based 3D printing technology

Science.gov (United States)

Riahi, Mohammadreza

2016-06-01

In this article, the fabrication of a corner cube array retro-reflective structure is presented by using DLP-based 3D printing technology. In this additive manufacturing technology a pattern of a cube corner array is designed in a computer and sliced with specific software. The image of each slice is then projected from the bottom side of a reservoir, containing UV cure resin, utilizing a DLP video projector. The projected area is cured and attached to a base plate. This process is repeated until the entire part is made. The best orientation of the printing process and the effect of layer thicknesses on the surface finish of the cube has been investigated. The thermal reflow surface finishing and replication with soft molding has also been presented in this article.

Computationally Efficient 2D DOA Estimation for L-Shaped Array with Unknown Mutual Coupling

Directory of Open Access Journals (Sweden)

Yang-Yang Dong

2018-01-01

Full Text Available Although L-shaped array can provide good angle estimation performance and is easy to implement, its two-dimensional (2D direction-of-arrival (DOA performance degrades greatly in the presence of mutual coupling. To deal with the mutual coupling effect, a novel 2D DOA estimation method for L-shaped array with low computational complexity is developed in this paper. First, we generalize the conventional mutual coupling model for L-shaped array and compensate the mutual coupling blindly via sacrificing a few sensors as auxiliary elements. Then we apply the propagator method twice to mitigate the effect of strong source signal correlation effect. Finally, the estimations of azimuth and elevation angles are achieved simultaneously without pair matching via the complex eigenvalue technique. Compared with the existing methods, the proposed method is computationally efficient without spectrum search or polynomial rooting and also has fine angle estimation performance for highly correlated source signals. Theoretical analysis and simulation results have demonstrated the effectiveness of the proposed method.

Programmable cellular arrays. Faults testing and correcting in cellular arrays

International Nuclear Information System (INIS)

Cercel, L.

1978-03-01

A review of some recent researches about programmable cellular arrays in computing and digital processing of information systems is presented, and includes both combinational and sequential arrays, with full arbitrary behaviour, or which can realize better implementations of specialized blocks as: arithmetic units, counters, comparators, control systems, memory blocks, etc. Also, the paper presents applications of cellular arrays in microprogramming, in implementing of a specialized computer for matrix operations, in modeling of universal computing systems. The last section deals with problems of fault testing and correcting in cellular arrays. (author)

Ambiguity Resolution for Phase-Based 3-D Source Localization under Fixed Uniform Circular Array.

Science.gov (United States)

Chen, Xin; Liu, Zhen; Wei, Xizhang

2017-05-11

Under fixed uniform circular array (UCA), 3-D parameter estimation of a source whose half-wavelength is smaller than the array aperture would suffer from a serious phase ambiguity problem, which also appears in a recently proposed phase-based algorithm. In this paper, by using the centro-symmetry of UCA with an even number of sensors, the source's angles and range can be decoupled and a novel algorithm named subarray grouping and ambiguity searching (SGAS) is addressed to resolve angle ambiguity. In the SGAS algorithm, each subarray formed by two couples of centro-symmetry sensors can obtain a batch of results under different ambiguities, and by searching the nearest value among subarrays, which is always corresponding to correct ambiguity, rough angle estimation with no ambiguity is realized. Then, the unambiguous angles are employed to resolve phase ambiguity in a phase-based 3-D parameter estimation algorithm, and the source's range, as well as more precise angles, can be achieved. Moreover, to improve the practical performance of SGAS, the optimal structure of subarrays and subarray selection criteria are further investigated. Simulation results demonstrate the satisfying performance of the proposed method in 3-D source localization.

Low-Temperature Rapid Fabrication of ZnO Nanowire UV Sensor Array by Laser-Induced Local Hydrothermal Growth

Directory of Open Access Journals (Sweden)

Sukjoon Hong

2013-01-01

Full Text Available We demonstrate ZnO nanowire based UV sensor by laser-induced hydrothermal growth of ZnO nanowire. By inducing a localized temperature rise using focused laser, ZnO nanowire array at ~15 μm size consists of individual nanowires with ~8 μm length and 200~400 nm diameter is readily synthesized on gold electrode within 30 min at the desired position. The laser-induced growth process is consecutively applied on two different points to bridge the micron gap between the electrodes. The resultant photoconductive ZnO NW interconnections display 2~3 orders increase in the current upon the UV exposure at a fixed voltage bias. It is also confirmed that the amount of photocurrent can be easily adjusted by changing the number of ZnO NW array junctions. The device exhibits clear response to the repeated UV illumination, suggesting that this process can be usefully applied for the facile fabrication of low-cost UV sensor array.

Nanoliter Centrifugal Liquid Dispenser Coupled with Superhydrophobic Microwell Array Chips for High-Throughput Cell Assays

Directory of Open Access Journals (Sweden)

Yuyi Wang

2018-06-01

Full Text Available Microfluidic systems have been regarded as a potential platform for high-throughput screening technology in drug discovery due to their low sample consumption, high integration, and easy operation. The handling of small-volume liquid is an essential operation in microfluidic systems, especially in investigating large-scale combination conditions. Here, we develop a nanoliter centrifugal liquid dispenser (NanoCLD coupled with superhydrophobic microwell array chips for high-throughput cell-based assays in the nanoliter scale. The NanoCLD consists of a plastic stock block with an array of drilled through holes, a reagent microwell array chip (reagent chip, and an alignment bottom assembled together in a fixture. A simple centrifugation at 800 rpm can dispense ~160 nL reagents into microwells in 5 min. The dispensed reagents are then delivered to cells by sandwiching the reagent chip upside down with another microwell array chip (cell chip on which cells are cultured. A gradient of doxorubicin is then dispensed to the cell chip using the NanoCLD for validating the feasibility of performing drug tests on our microchip platform. This novel nanoliter-volume liquid dispensing method is simple, easy to operate, and especially suitable for repeatedly dispensing many different reagents simultaneously to microwells.

The International Pulsar Timing Array project: using pulsars as a gravitational wave detector

Energy Technology Data Exchange (ETDEWEB)

Hobbs, G; Burke-Spolaor, S; Champion, D [Australia Telescope National Facility, CSIRO, PO Box 76, Epping, NSW 1710 (Australia); Archibald, A [Department of Physics, McGill University, Montreal, PQ, H3A 2T8 (Canada); Arzoumanian, Z [CRESST/USRA, NASA Goddard Space Flight Center, Code 662, Greenbelt, MD 20771 (United States); Backer, D [Astronomy Department and Radio Astronomy Laboratory, University of California, Berkeley, CA 94720-3411 (United States); Bailes, M; Bhat, N D R [Centre for Astrophysics and Supercomputing, Swinburne University of Technology, PO Box 218, Hawthorn VIC 3122 (Australia); Burgay, M [Universita di Cagliari, Dipartimento di Fisica, SP Monserrato-Sestu km 0.7, 09042 Monserrato (Canada) (Italy); Cognard, I; Desvignes, G; Ferdman, R D [Station de Radioastronomie de Nanay, Observatoire de Paris, 18330 Nancay (France); Coles, W [Electrical and Computer Engineering, University of California at San Diego, La Jolla, CA (United States); Cordes, J [Astronomy Department, Cornell University, Ithaca, NY 14853 (United States); Demorest, P [National Radio Astronomy Observatory (NRAO), Charlottesville, VA 22903 (United States); Finn, L [Center for Gravitational Wave Physics, The Pennsylvania State University, University Park, PA 16802 (United States); Freire, P [Max-Planck-Institut fuer Radioastronomie, Auf Dem Huegel 69, 53121, Bonn (Germany); Gonzalez, M [Department of Physics and Astronomy, University of British Columbia, 6224 Agricultural Road, Vancouver, BC V6T 1Z1 (Canada); Hessels, J [Astronomical Institute Anton Pannekoek, University of Amsterdam, Kruislaan 403, 1098 SJ Amsterdam (Netherlands); Hotan, A, E-mail: george.hobbs@csiro.a [Department of Imaging and Applied Physics, Curtin University, Bentley, WA (Australia)

2010-04-21

The International Pulsar Timing Array project combines observations of pulsars from both northern and southern hemisphere observatories with the main aim of detecting ultra-low frequency (approx 10{sup -9}-10{sup -8} Hz) gravitational waves. Here we introduce the project, review the methods used to search for gravitational waves emitted from coalescing supermassive binary black-hole systems in the centres of merging galaxies and discuss the status of the project.

The FLARES project: An innovative detector technology for rare events searches

Energy Technology Data Exchange (ETDEWEB)

Capelli, S., E-mail: capelli@mib.infn.it [Dipatimento di Fisica, Università di Milano Bicocca, piazza della Scienza 3, 20126 Milano (Italy); INFN Sezione di Milano Bicocca, piazza della Scienza 3, 20126 Milano (Italy); Baldazzi, G. [Università di Bologna, Viale Berti Pichat 6/2, 40127 Bologna (Italy); INFN Sezione di Bologna, Viale Berti Pichat 6/2, 40127 Bologna (Italy); Beretta, M. [Dipatimento di Fisica, Università di Milano Bicocca, piazza della Scienza 3, 20126 Milano (Italy); INFN Sezione di Milano Bicocca, piazza della Scienza 3, 20126 Milano (Italy); Bonvicini, V. [Dipartimento di Scienza dei Materiali, Università di Milano Bicocca, Via Roberto Cozzi 55, 20126 Milano (Italy); Campana, R. [Università di Bologna, Viale Berti Pichat 6/2, 40127 Bologna (Italy); INFN Sezione di Bologna, Viale Berti Pichat 6/2, 40127 Bologna (Italy); Evangelista, Y. [INAF - IAPS, Via del Fosso del Cavaliere 100, I-00133, Roma (Italy); INFN Sezione di Roma Tor Vergata, Via della Ricerca Scientifica 1, I-00133 Roma (Italy); Fasoli, M. [INFN Sezione di Milano Bicocca, piazza della Scienza 3, 20126 Milano (Italy); Dipartimento di Scienza dei Materiali, Università di Milano Bicocca, Via Roberto Cozzi 55, 20126 Milano (Italy); Feroci, M. [INAF - IAPS, Via del Fosso del Cavaliere 100, I-00133, Roma (Italy); INFN Sezione di Roma Tor Vergata, Via della Ricerca Scientifica 1, I-00133 Roma (Italy); Fuschino, F. [INFN Sezione di Bologna, Viale Berti Pichat 6/2, 40127 Bologna (Italy); Università di Bologna, Viale Berti Pichat 6/2, 40127 Bologna (Italy); Gironi, L. [Dipatimento di Fisica, Università di Milano Bicocca, piazza della Scienza 3, 20126 Milano (Italy); INFN Sezione di Milano Bicocca, piazza della Scienza 3, 20126 Milano (Italy); and others

2017-02-11

FLARES is an innovative project in the field of rare events searches, such as the search for the neutrinoless double beta decay. It aims at demonstrating the high potential of a technique that combines ultra-pure scintillating crystals with arrays of high performance silicon drift detectors, operated at about 120 K, to reach a 1% level energy resolution. The proposed technique will combine in a single device all the demanding features needed by an ideal experiment looking for rare events. The performance of a first production of matrices of silicon drift detectors as well as first measurements of the low temperature light yield of a selection of high purity scintillating crystals will be presented and discussed.

Expert Search Strategies: The Information Retrieval Practices of Healthcare Information Professionals.

Science.gov (United States)

Russell-Rose, Tony; Chamberlain, Jon

2017-10-02

Healthcare information professionals play a key role in closing the knowledge gap between medical research and clinical practice. Their work involves meticulous searching of literature databases using complex search strategies that can consist of hundreds of keywords, operators, and ontology terms. This process is prone to error and can lead to inefficiency and bias if performed incorrectly. The aim of this study was to investigate the search behavior of healthcare information professionals, uncovering their needs, goals, and requirements for information retrieval systems. A survey was distributed to healthcare information professionals via professional association email discussion lists. It investigated the search tasks they undertake, their techniques for search strategy formulation, their approaches to evaluating search results, and their preferred functionality for searching library-style databases. The popular literature search system PubMed was then evaluated to determine the extent to which their needs were met. The 107 respondents indicated that their information retrieval process relied on the use of complex, repeatable, and transparent search strategies. On average it took 60 minutes to formulate a search strategy, with a search task taking 4 hours and consisting of 15 strategy lines. Respondents reviewed a median of 175 results per search task, far more than they would ideally like (100). The most desired features of a search system were merging search queries and combining search results. Healthcare information professionals routinely address some of the most challenging information retrieval problems of any profession. However, their needs are not fully supported by current literature search systems and there is demand for improved functionality, in particular regarding the development and management of search strategies. ©Tony Russell-Rose, Jon Chamberlain. Originally published in JMIR Medical Informatics (http://medinform.jmir.org), 02.10.2017.

The detector calibration system for the CUORE cryogenic bolometer array

Energy Technology Data Exchange (ETDEWEB)

Cushman, Jeremy S., E-mail: jeremy.cushman@yale.edu [Wright Laboratory, Department of Physics, Yale University, New Haven, CT 06520 (United States); Dally, Adam [Department of Physics, University of Wisconsin, Madison, WI 53706 (United States); Davis, Christopher J. [Wright Laboratory, Department of Physics, Yale University, New Haven, CT 06520 (United States); Ejzak, Larissa; Lenz, Daniel [Department of Physics, University of Wisconsin, Madison, WI 53706 (United States); Lim, Kyungeun E. [Wright Laboratory, Department of Physics, Yale University, New Haven, CT 06520 (United States); Heeger, Karsten M., E-mail: karsten.heeger@yale.edu [Wright Laboratory, Department of Physics, Yale University, New Haven, CT 06520 (United States); Maruyama, Reina H. [Wright Laboratory, Department of Physics, Yale University, New Haven, CT 06520 (United States); Nucciotti, Angelo [Dipartimento di Fisica, Università di Milano-Bicocca, Milano I-20126 (Italy); INFN – Sezione di Milano Bicocca, Milano I-20126 (Italy); Sangiorgio, Samuele [Department of Physics, University of Wisconsin, Madison, WI 53706 (United States); Wise, Thomas [Wright Laboratory, Department of Physics, Yale University, New Haven, CT 06520 (United States); Department of Physics, University of Wisconsin, Madison, WI 53706 (United States)

2017-02-01

The Cryogenic Underground Observatory for Rare Events (CUORE) is a ton-scale cryogenic experiment designed to search for neutrinoless double-beta decay of {sup 130}Te and other rare events. The CUORE detector consists of 988 TeO{sub 2} bolometers operated underground at 10 mK in a dilution refrigerator at the Laboratori Nazionali del Gran Sasso. Candidate events are identified through a precise measurement of their energy. The absolute energy response of the detectors is established by the regular calibration of each individual bolometer using gamma sources. The close-packed configuration of the CUORE bolometer array combined with the extensive shielding surrounding the detectors requires the placement of calibration sources within the array itself. The CUORE Detector Calibration System is designed to insert radioactive sources into and remove them from the cryostat while respecting the stringent heat load, radiopurity, and operational requirements of the experiment. This paper describes the design, commissioning, and performance of this novel source calibration deployment system for ultra-low-temperature environments.

A versatile palindromic amphipathic repeat coding sequence horizontally distributed among diverse bacterial and eucaryotic microbes

Directory of Open Access Journals (Sweden)

Glass John I

2010-07-01

Full Text Available Abstract Background Intragenic tandem repeats occur throughout all domains of life and impart functional and structural variability to diverse translation products. Repeat proteins confer distinctive surface phenotypes to many unicellular organisms, including those with minimal genomes such as the wall-less bacterial monoderms, Mollicutes. One such repeat pattern in this clade is distributed in a manner suggesting its exchange by horizontal gene transfer (HGT. Expanding genome sequence databases reveal the pattern in a widening range of bacteria, and recently among eucaryotic microbes. We examined the genomic flux and consequences of the motif by determining its distribution, predicted structural features and association with membrane-targeted proteins. Results Using a refined hidden Markov model, we document a 25-residue protein sequence motif tandemly arrayed in variable-number repeats in ORFs lacking assigned functions. It appears sporadically in unicellular microbes from disparate bacterial and eucaryotic clades, representing diverse lifestyles and ecological niches that include host parasitic, marine and extreme environments. Tracts of the repeats predict a malleable configuration of recurring domains, with conserved hydrophobic residues forming an amphipathic secondary structure in which hydrophilic residues endow extensive sequence variation. Many ORFs with these domains also have membrane-targeting sequences that predict assorted topologies; others may comprise reservoirs of sequence variants. We demonstrate expressed variants among surface lipoproteins that distinguish closely related animal pathogens belonging to a subgroup of the Mollicutes. DNA sequences encoding the tandem domains display dyad symmetry. Moreover, in some taxa the domains occur in ORFs selectively associated with mobile elements. These features, a punctate phylogenetic distribution, and different patterns of dispersal in genomes of related taxa, suggest that the

Ambiguity resolving based on cosine property of phase differences for 3D source localization with uniform circular array

Science.gov (United States)

Chen, Xin; Wang, Shuhong; Liu, Zhen; Wei, Xizhang

2017-07-01

Localization of a source whose half-wavelength is smaller than the array aperture would suffer from serious phase ambiguity problem, which also appears in recently proposed phase-based algorithms. In this paper, by using the centro-symmetry of fixed uniform circular array (UCA) with even number of sensors, the source's angles and range can be decoupled and a novel ambiguity resolving approach is addressed for phase-based algorithms of source's 3-D localization (azimuth angle, elevation angle, and range). In the proposed method, by using the cosine property of unambiguous phase differences, ambiguity searching and actual-value matching are first employed to obtain actual phase differences and corresponding source's angles. Then, the unambiguous angles are utilized to estimate the source's range based on a one dimension multiple signal classification (1-D MUSIC) estimator. Finally, simulation experiments investigate the influence of step size in search and SNR on performance of ambiguity resolution and demonstrate the satisfactory estimation performance of the proposed method.

Stable statistical representations facilitate visual search.

Science.gov (United States)

Corbett, Jennifer E; Melcher, David

2014-10-01

Observers represent the average properties of object ensembles even when they cannot identify individual elements. To investigate the functional role of ensemble statistics, we examined how modulating statistical stability affects visual search. We varied the mean and/or individual sizes of an array of Gabor patches while observers searched for a tilted target. In "stable" blocks, the mean and/or local sizes of the Gabors were constant over successive displays, whereas in "unstable" baseline blocks they changed from trial to trial. Although there was no relationship between the context and the spatial location of the target, observers found targets faster (as indexed by faster correct responses and fewer saccades) as the global mean size became stable over several displays. Building statistical stability also facilitated scanning the scene, as measured by larger saccadic amplitudes, faster saccadic reaction times, and shorter fixation durations. These findings suggest a central role for peripheral visual information, creating context to free resources for detailed processing of salient targets and maintaining the illusion of visual stability.

Searching for gamma-ray counterparts to gravitational waves from merging binary neutron stars with the Cherenkov Telescope Array

Science.gov (United States)

Patricelli, B.; Stamerra, A.; Razzano, M.; Pian, E.; Cella, G.

2018-05-01

The merger of binary neutron star (BNS) systems are predicted to be progenitors of short gamma-ray bursts (GRBs); the definitive probe of this association came with the recent detection of gravitational waves (GWs) from a BNS merger by Advanced LIGO and Advanced Virgo (GW170817), in coincidence with the short GRB 170817A observed by Fermi-GBM and INTEGRAL. Short GRBs are also expected to emit very-high energy (VHE, > 10S0 GeV) photons and VHE electromagnetic (EM) upper limits have been set with observations performed by ground-based gamma-ray detectors and during the intense EM follow-up campaign associated with GW170817/GRB 170817A. In the next years, the searches for VHE EM counterparts will become more effective thanks to the Cherenkov Telescope Array (CTA): this instrument will be fundamental for the EM follow-up of transient GW events at VHE, owing to its unprecedented sensitivity, rapid response (few tens of seconds) and capability to monitor large sky areas via survey-mode operation. We present a comprehensive study on the prospects for joint GW and VHE EM observations of merging BNSs with Advanced LIGO, Advanced Virgo and CTA, based on detailed simulations of the multi-messenger emission and detection. We propose a new observational strategy optimized on the prior assumptions about the EM emission. The method can be further generalized to include other electromagnetic emission models. According to this study CTA will cover most of the region of the GW skymap for the intermediate and most energetic on-axis GRBs associated to the GW event. We estimate the expected joint GW and VHE EM detection rates and we found this rate goes from 0.08 up to 0.5 events per year for the most energetic EM sources.

Does conspicuity enhance distraction? Saliency and eye landing position when searching for objects.

Science.gov (United States)

Foulsham, Tom; Underwood, Geoffrey

2009-06-01

While visual saliency may sometimes capture attention, the guidance of eye movements in search is often dominated by knowledge of the target. How is the search for an object influenced by the saliency of an adjacent distractor? Participants searched for a target amongst an array of objects, with distractor saliency having an effect on response time and on the speed at which targets were found. Saliency did not predict the order in which objects in target-absent trials were fixated. The within-target landing position was distributed around a modal position close to the centre of the object. Saliency did not affect this position, the latency of the initial saccade, or the likelihood of the distractor being fixated, suggesting that saliency affects the allocation of covert attention and not just eye movements.

Automated Literature Searches for Longitudinal Tracking of Cancer Research Training Program Graduates.

Science.gov (United States)

Padilla, Luz A; Desmond, Renee A; Brooks, C Michael; Waterbor, John W

2018-06-01

A key outcome measure of cancer research training programs is the number of cancer-related peer-reviewed publications after training. Because program graduates do not routinely report their publications, staff must periodically conduct electronic literature searches on each graduate. The purpose of this study is to compare findings of an innovative computer-based automated search program versus repeated manual literature searches to identify post-training peer-reviewed publications. In late 2014, manual searches for publications by former R25 students identified 232 cancer-related articles published by 112 of 543 program graduates. In 2016, a research assistant was instructed in performing Scopus literature searches for comparison with individual PubMed searches on our 543 program graduates. Through 2014, Scopus found 304 cancer publications, 220 of that had been retrieved manually plus an additional 84 papers. However, Scopus missed 12 publications found manually. Together, both methods found 316 publications. The automated method found 96.2 % of the 316 publications while individual searches found only 73.4 %. An automated search method such as using the Scopus database is a key tool for conducting comprehensive literature searches, but it must be supplemented with periodic manual searches to find the initial publications of program graduates. A time-saving feature of Scopus is the periodic automatic alerts of new publications. Although a training period is needed and initial costs can be high, an automated search method is worthwhile due to its high sensitivity and efficiency in the long term.

A new normalizing algorithm for BAC CGH arrays with quality control metrics.

Science.gov (United States)

Miecznikowski, Jeffrey C; Gaile, Daniel P; Liu, Song; Shepherd, Lori; Nowak, Norma

2011-01-01

The main focus in pin-tip (or print-tip) microarray analysis is determining which probes, genes, or oligonucleotides are differentially expressed. Specifically in array comparative genomic hybridization (aCGH) experiments, researchers search for chromosomal imbalances in the genome. To model this data, scientists apply statistical methods to the structure of the experiment and assume that the data consist of the signal plus random noise. In this paper we propose "SmoothArray", a new method to preprocess comparative genomic hybridization (CGH) bacterial artificial chromosome (BAC) arrays and we show the effects on a cancer dataset. As part of our R software package "aCGHplus," this freely available algorithm removes the variation due to the intensity effects, pin/print-tip, the spatial location on the microarray chip, and the relative location from the well plate. removal of this variation improves the downstream analysis and subsequent inferences made on the data. Further, we present measures to evaluate the quality of the dataset according to the arrayer pins, 384-well plates, plate rows, and plate columns. We compare our method against competing methods using several metrics to measure the biological signal. With this novel normalization algorithm and quality control measures, the user can improve their inferences on datasets and pinpoint problems that may arise in their BAC aCGH technology.

COHERENT NETWORK ANALYSIS FOR CONTINUOUS GRAVITATIONAL WAVE SIGNALS IN A PULSAR TIMING ARRAY: PULSAR PHASES AS EXTRINSIC PARAMETERS

Energy Technology Data Exchange (ETDEWEB)

Wang, Yan [MOE Key Laboratory of Fundamental Physical Quantities Measurements, School of Physics, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan, Hubei Province 430074 (China); Mohanty, Soumya D.; Jenet, Fredrick A., E-mail: ywang12@hust.edu.cn [Department of Physics, University of Texas Rio Grande Valley, 1 West University Boulevard, Brownsville, TX 78520 (United States)

2015-12-20

Supermassive black hole binaries are one of the primary targets of gravitational wave (GW) searches using pulsar timing arrays (PTAs). GW signals from such systems are well represented by parameterized models, allowing the standard Generalized Likelihood Ratio Test (GLRT) to be used for their detection and estimation. However, there is a dichotomy in how the GLRT can be implemented for PTAs: there are two possible ways in which one can split the set of signal parameters for semi-analytical and numerical extremization. The straightforward extension of the method used for continuous signals in ground-based GW searches, where the so-called pulsar phase parameters are maximized numerically, was addressed in an earlier paper. In this paper, we report the first study of the performance of the second approach where the pulsar phases are maximized semi-analytically. This approach is scalable since the number of parameters left over for numerical optimization does not depend on the size of the PTA. Our results show that for the same array size (9 pulsars), the new method performs somewhat worse in parameter estimation, but not in detection, than the previous method where the pulsar phases were maximized numerically. The origin of the performance discrepancy is likely to be in the ill-posedness that is intrinsic to any network analysis method. However, the scalability of the new method allows the ill-posedness to be mitigated by simply adding more pulsars to the array. This is shown explicitly by taking a larger array of pulsars.

Cyclotron-Resonance-Maser Arrays

International Nuclear Information System (INIS)

Kesar, A.; Lei, L.; Dikhtyar, V.; Korol, M.; Jerby, E.

1999-01-01

The cyclotron-resonance-maser (CRM) array [1] is a radiation source which consists of CRM elements coupled together under a common magnetic field. Each CRM-element employs a low-energy electron-beam which performs a cyclotron interaction with the local electromagnetic wave. These waves can be coupled together among the CRM elements, hence the interaction is coherently synchronized in the entire array. The implementation of the CRM-array approach may alleviate several technological difficulties which impede the development of single-beam gyro-devices. Furthermore, it proposes new features, such as the phased-array antenna incorporated in the CRM-array itself. The CRM-array studies may lead to the development of compact, high-power radiation sources operating at low-voltages. This paper introduces new conceptual schemes of CRM-arrays, and presents the progress in related theoretical and experimental studies in our laboratory. These include a multi-mode analysis of a CRM-array, and a first operation of this device with five carbon-fiber cathodes

Degree-of-Freedom Strengthened Cascade Array for DOD-DOA Estimation in MIMO Array Systems.

Science.gov (United States)

Yao, Bobin; Dong, Zhi; Zhang, Weile; Wang, Wei; Wu, Qisheng

2018-05-14

In spatial spectrum estimation, difference co-array can provide extra degrees-of-freedom (DOFs) for promoting parameter identifiability and parameter estimation accuracy. For the sake of acquiring as more DOFs as possible with a given number of physical sensors, we herein design a novel sensor array geometry named cascade array. This structure is generated by systematically connecting a uniform linear array (ULA) and a non-uniform linear array, and can provide more DOFs than some exist array structures but less than the upper-bound indicated by minimum redundant array (MRA). We further apply this cascade array into multiple input multiple output (MIMO) array systems, and propose a novel joint direction of departure (DOD) and direction of arrival (DOA) estimation algorithm, which is based on a reduced-dimensional weighted subspace fitting technique. The algorithm is angle auto-paired and computationally efficient. Theoretical analysis and numerical simulations prove the advantages and effectiveness of the proposed array structure and the related algorithm.

78 FR 65594 - Vehicular Repeaters

Science.gov (United States)

2013-11-01

... coordinators estimate the effect on coordination fees? Does the supposed benefit that mobile repeater stations... allow the licensing and operation of vehicular repeater systems and other mobile repeaters by public... email: [email protected] or phone: 202-418- 0530 or TTY: 202-418-0432. For detailed instructions for...

Application of an array processor to the analysis of magnetic data for the Doublet III tokamak

International Nuclear Information System (INIS)

Wang, T.S.; Saito, M.T.

1980-08-01

Discussed herein is a fast computational technique employing the Floating Point Systems AP-190L array processor to analyze magnetic data for the Doublet III tokamak, a fusion research device. Interpretation of the experimental data requires the repeated solution of a free-boundary nonlinear partial differential equation, which describes the magnetohydrodynamic (MHD) equilibrium of the plasma. For this particular application, we have found that the array processor is only 1.4 and 3.5 times slower than the CDC-7600 and CRAY computers, respectively. The overhead on the host DEC-10 computer was kept to a minimum by chaining the complete Poisson solver and free-boundary algorithm into one single-load module using the vector function chainer (VFC). A simple time-sharing scheme for using the MHD code is also discussed

Tevatron serial data repeater system

International Nuclear Information System (INIS)

Ducar, R.J.

1981-01-01

A ten megabit per second serial data repeater system has been developed for the 6.28km Tevatron accelerator. The repeaters are positioned at each of the thirty service buildings and accommodate control and abort system communications as well as distribution of the Tevatron time and energy clocks. The repeaters are transparent to the particular protocol of the transmissions. Serial data are encoded locally as unipolar two volt signals employing the self-clocking Manchester Bi-Phase code. The repeaters modulate the local signals to low-power bursts of 50 MHz rf carrier for the 260m transmission between service buildings. The repeaters also demodulate the transmission and restructure the data for local utilization. The employment of frequency discrimination techniques yields high immunity to the characteristic noise spectrum

Efficient Narrowband Direction of Arrival Estimation Based on a Combination of Uniform Linear/Shirvani-Akbari Arrays

Directory of Open Access Journals (Sweden)

Shahriar Shirvani Moghaddam

2012-01-01

Full Text Available Uniform linear array (ULA geometry does not perform well for direction of arrival (DOA estimation at directions close to the array endfires. Shirvani and Akbari solved this problem by displacing two elements from both ends of the ULA to the top and/or bottom of the array axis. Shirvani-Akbari array (SAA presents a considerable improvement in the DOA estimation of narrowband sources arriving at endfire directions in terms of DOA estimation accuracy and angular resolution. In this paper, all new proposed SAA configurations are modelled and also examined, numerically. In this paper, two well-known DOA estimation algorithms, multiple signal classification (MUSIC and minimum variance distortionless response (MVDR, are used to evaluate the effectiveness of proposed arrays using total root mean square error (RMSE criterion. In addition, two new scenarios are proposed which divide angular search to two parts, directions close to array endfires as well as middle angles. For middle angles, which belong to (−70∘≤≤70∘, ULA is considered, and for endfire angles, the angles which belong to (−90∘≤≤−70∘ and (70∘≤≤90∘, SAA is considered. Simulation results of new proposed scenarios for DOA estimation of narrowband signals show the better performance with lower computational load.

Structure and field emission of graphene layers on top of silicon nanowire arrays

International Nuclear Information System (INIS)

Huang, Bohr-Ran; Chan, Hui-Wen; Jou, Shyankay; Chen, Guan-Yu; Kuo, Hsiu-An; Song, Wan-Jhen

2016-01-01

Graphical abstract: - Highlights: • We prepared graphene on top of silicon nanowires by transfer-print technique. • Graphene changed from discrete flakes to a continuous by repeated transfer-print. • The triple-layer graphene had high electron field emission due to large edge ratio. - Abstract: Monolayer graphene was grown on copper foils and then transferred on planar silicon substrates and on top of silicon nanowire (SiNW) arrays to form single- to quadruple-layer graphene films. The morphology, structure, and electron field emission (FE) of these graphene films were investigated. The graphene films on the planar silicon substrates were continuous. The single- to triple-layer graphene films on the SiNW arrays were discontinuous and while the quadruple-layer graphene film featured a mostly continuous area. The Raman spectra of the graphene films on the SiNW arrays showed G and G′ bands with a singular-Lorentzian shape together with a weak D band. The D band intensity decreased as the number of graphene layers increased. The FE efficiency of the graphene films on the planar silicon substrates and the SiNW arrays varied with the number of graphene layers. The turn-on field for the single- to quadruple-layer graphene films on planar silicon substrates were 4.3, 3.7, 3.5 and 3.4 V/μm, respectively. The turn-on field for the single- to quadruple-layer graphene films on SiNW arrays decreased to 3.9, 3.3, 3.0 and 3.3 V/μm, respectively. Correlation of the FE with structure and morphology of the graphene films is discussed.

Structure and field emission of graphene layers on top of silicon nanowire arrays

Energy Technology Data Exchange (ETDEWEB)

Huang, Bohr-Ran; Chan, Hui-Wen [Graduate Institute of Electro-Optical Engineering and Department of Electronic Engineering, National Taiwan University of Science and Technology, Taipei 106, Taiwan (China); Jou, Shyankay, E-mail: sjou@mail.ntust.edu.tw [Department of Materials Science and Engineering, National Taiwan University of Science and Technology, Taipei 106, Taiwan (China); Chen, Guan-Yu [Graduate Institute of Electro-Optical Engineering and Department of Electronic Engineering, National Taiwan University of Science and Technology, Taipei 106, Taiwan (China); Kuo, Hsiu-An; Song, Wan-Jhen [Department of Materials Science and Engineering, National Taiwan University of Science and Technology, Taipei 106, Taiwan (China)

2016-01-30

Graphical abstract: - Highlights: • We prepared graphene on top of silicon nanowires by transfer-print technique. • Graphene changed from discrete flakes to a continuous by repeated transfer-print. • The triple-layer graphene had high electron field emission due to large edge ratio. - Abstract: Monolayer graphene was grown on copper foils and then transferred on planar silicon substrates and on top of silicon nanowire (SiNW) arrays to form single- to quadruple-layer graphene films. The morphology, structure, and electron field emission (FE) of these graphene films were investigated. The graphene films on the planar silicon substrates were continuous. The single- to triple-layer graphene films on the SiNW arrays were discontinuous and while the quadruple-layer graphene film featured a mostly continuous area. The Raman spectra of the graphene films on the SiNW arrays showed G and G′ bands with a singular-Lorentzian shape together with a weak D band. The D band intensity decreased as the number of graphene layers increased. The FE efficiency of the graphene films on the planar silicon substrates and the SiNW arrays varied with the number of graphene layers. The turn-on field for the single- to quadruple-layer graphene films on planar silicon substrates were 4.3, 3.7, 3.5 and 3.4 V/μm, respectively. The turn-on field for the single- to quadruple-layer graphene films on SiNW arrays decreased to 3.9, 3.3, 3.0 and 3.3 V/μm, respectively. Correlation of the FE with structure and morphology of the graphene films is discussed.

A Unique test for Hubble's new Solar Arrays

Science.gov (United States)

2000-10-01

In mid-October, a team from the European Space Agency (ESA) and NASA will perform a difficult, never-before-done test on one of the Hubble Space Telescope's new solar array panels. Two of these panels, or arrays, will be installed by astronauts in November 2001, when the Space Shuttle Columbia visits Hubble on a routine service mission. The test will ensure that the new arrays are solid and vibration free before they are installed on orbit. The test will be conducted at ESA's European Space Research and Technology Center (ESTEC) in Noordwijk, The Netherlands. Because of the array's size, the facility's special features, and ESA's longstanding experience with Hubble's solar arrays, ESTEC is the only place in the world the test can be performed. This test is the latest chapter in a longstanding partnership between ESA and NASA on the Hubble Space Telescope. The Large Space Simulator at ESTEC, ESA's world-class test facility, features a huge vacuum chamber containing a bank of extremely bright lights that simulate the Sun's intensity - including sunrise and sunset. By exposing the solar wing to the light and temperature extremes of Hubble's orbit, engineers can verify how the new set of arrays will act in space. Hubble orbits the Earth once every 90 minutes. During each orbit, the telescope experiences 45 minutes of searing sunlight and 45 minutes of frigid darkness. This test will detect any tiny vibrations, or jitters, caused by these dramatic, repeated changes. Even a small amount of jitter can affect Hubble's sensitive instruments and interfere with observations. Hubble's first set of solar arrays experienced mild jitter and was replaced in 1993 with a much more stable pair. Since that time, advances in solar cell technology have led to the development of even more efficient arrays. In 2001, NASA will take advantage of these improvements, by fitting Hubble with a third-generation set of arrays. Though smaller, this new set generates more power than the previous

Controlled Nucleation and Growth of DNA Tile Arrays within Prescribed DNA Origami Frames and Their Dynamics

Science.gov (United States)

2015-01-01

Controlled nucleation of nanoscale building blocks by geometrically defined seeds implanted in DNA nanoscaffolds represents a unique strategy to study and understand the dynamic processes of molecular self-assembly. Here we utilize a two-dimensional DNA origami frame with a hollow interior and selectively positioned DNA hybridization seeds to control the self-assembly of DNA tile building blocks, where the small DNA tiles are directed to fill the interior of the frame through prescribed sticky end interactions. This design facilitates the construction of DNA origami/array hybrids that adopt the overall shape and dimensions of the origami frame, forming a 2D array in the core consisting of a large number of simple repeating DNA tiles. The formation of the origami/array hybrid was characterized with atomic force microscopy, and the nucleation dynamics were monitored by serial AFM scanning and fluorescence spectroscopy, which revealed faster kinetics of growth within the frame as compared to growth without the presence of a frame. Our study provides insight into the fundamental behavior of DNA-based self-assembling systems. PMID:24575893

Repeat Customer Success in Extension

Science.gov (United States)

Bess, Melissa M.; Traub, Sarah M.

2013-01-01

Four multi-session research-based programs were offered by two Extension specialist in one rural Missouri county. Eleven participants who came to multiple Extension programs could be called "repeat customers." Based on the total number of participants for all four programs, 25% could be deemed as repeat customers. Repeat customers had…

Film repeats in radiology department

International Nuclear Information System (INIS)

Suwan, A. Z.; Al-Shakharah, A. I

1997-01-01

During a one year period, 4910 radiographs of 55780 films were repeated. The objective of our study was to analyse and to classify the causes in order to minimize the repeats, cut the expenses and to provide optimal radiographs for accurate diagnosis. Analysis of the different factors revealed that, 43.6% of film repeats in our service were due to faults in exposure factors, centering comprises 15.9% of the repeats, while too much collimation was responsible for 7.6% of these repeats. All of which can be decreased by awareness and programmed training of technicians. Film blurring caused by patient motion was also responsible for 4.9% for radiographs reexamination, which can be minimized by detailed explanation to the patient and providing the necessary privacy. Fogging of X-Ray films by improper storage or inadequate handling or processing faults were responsible for 14.5% in repeats in our study. Methods and criteria for proper storage and handling of films were discussed. Recommendation for using modern day-light and laser processor has been high lighted. Artefacts are noticeably high in our cases, due to spinal dresses and frequent usage of precious metals for c osmotic purposes in this part of the world. The repeated films comprise 8.8% of all films We conclude that, the main factor responsible for repeats of up to 81.6% of cases was the technologists, thus emphasizing the importance of adequate training of the technologists. (authors). 15 refs., 9 figs., 1 table

Electroencephalography epilepsy classifications using hybrid cuckoo search and neural network

Science.gov (United States)

Pratiwi, A. B.; Damayanti, A.; Miswanto

2017-07-01

Epilepsy is a condition that affects the brain and causes repeated seizures. This seizure is episodes that can vary and nearly undetectable to long periods of vigorous shaking or brain contractions. Epilepsy often can be confirmed with an electrocephalography (EEG). Neural Networks has been used in biomedic signal analysis, it has successfully classified the biomedic signal, such as EEG signal. In this paper, a hybrid cuckoo search and neural network are used to recognize EEG signal for epilepsy classifications. The weight of the multilayer perceptron is optimized by the cuckoo search algorithm based on its error. The aim of this methods is making the network faster to obtained the local or global optimal then the process of classification become more accurate. Based on the comparison results with the traditional multilayer perceptron, the hybrid cuckoo search and multilayer perceptron provides better performance in term of error convergence and accuracy. The purpose methods give MSE 0.001 and accuracy 90.0 %.

Binder-free ZnO@ZnSnO3 quantum dots core-shell nanorod array anodes for lithium-ion batteries

Science.gov (United States)

Tan, Hsiang; Cho, Hsun-Wei; Wu, Jih-Jen

2018-06-01

In this work, ZnSnO3 quantum dots (QDs), instead of commonly used conductive carbon, are grown on the ZnO nanorod (NR) array to construct the binder-free ZnO@ZnSnO3 QDs core-shell NR array electrode on carbon cloth for lithium-ion battery. The ZnO@ZnSnO3 QDs core-shell NR array electrode exhibits excellent lithium storage performance with an improved cycling performance and superior rate capability compared to the ZnO NR array electrode. At a current density of 200 mAg-1, 15.8% capacity loss is acquired in the ZnO@ZnSnO3 QDs core-shell NR array electrode after 110 cycles with capacity retention of 1073 mAhg-1. Significant increases in reversible capacities from 340 to 545 mAhg-1 and from 95 to 390 mAhg-1 at current densities of 1000 and 2000 mAg-1, respectively, are achieved as the ZnO NR arrays are coated with the ZnSnO3 QD shells. The remarkably improved electrochemical performances result from that the configuration of binder-free ZnO@ZnSnO3 QDs core-shell NR array electrode not only facilitates the charge transfer through the solid electrolyte interface and the electronic/ionic conduction boundary as well as lithium ion diffusion but also effectively accommodates the volume change during repeated charge/discharge processes.

A review of array radars

Science.gov (United States)

Brookner, E.

1981-10-01

Achievements in the area of array radars are illustrated by such activities as the operational deployment of the large high-power, high-range-resolution Cobra Dane; the operational deployment of two all-solid-state high-power, large UHF Pave Paws radars; and the development of the SAM multifunction Patriot radar. This paper reviews the following topics: array radars steered in azimuth and elevation by phase shifting (phase-phase steered arrays); arrays steered + or - 60 deg, limited scan arrays, hemispherical coverage, and omnidirectional coverage arrays; array radars steering electronically in only one dimension, either by frequency or by phase steering; and array radar antennas which use no electronic scanning but instead use array antennas for achieving low antenna sidelobes.

Repeat migration and disappointment.

Science.gov (United States)

Grant, E K; Vanderkamp, J

1986-01-01

This article investigates the determinants of repeat migration among the 44 regions of Canada, using information from a large micro-database which spans the period 1968 to 1971. The explanation of repeat migration probabilities is a difficult task, and this attempt is only partly successful. May of the explanatory variables are not significant, and the overall explanatory power of the equations is not high. In the area of personal characteristics, the variables related to age, sex, and marital status are generally significant and with expected signs. The distance variable has a strongly positive effect on onward move probabilities. Variables related to prior migration experience have an important impact that differs between return and onward probabilities. In particular, the occurrence of prior moves has a striking effect on the probability of onward migration. The variable representing disappointment, or relative success of the initial move, plays a significant role in explaining repeat migration probabilities. The disappointment variable represents the ratio of actural versus expected wage income in the year after the initial move, and its effect on both repeat migration probabilities is always negative and almost always highly significant. The repeat probabilities diminish after a year's stay in the destination region, but disappointment in the most recent year still has a bearing on the delayed repeat probabilities. While the quantitative impact of the disappointment variable is not large, it is difficult to draw comparisons since similar estimates are not available elsewhere.

Quantum repeated games revisited

International Nuclear Information System (INIS)

Frąckiewicz, Piotr

2012-01-01

We present a scheme for playing quantum repeated 2 × 2 games based on Marinatto and Weber’s approach to quantum games. As a potential application, we study the twice repeated Prisoner’s Dilemma game. We show that results not available in the classical game can be obtained when the game is played in the quantum way. Before we present our idea, we comment on the previous scheme of playing quantum repeated games proposed by Iqbal and Toor. We point out the drawbacks that make their results unacceptable. (paper)

CAG repeat testing of androgen receptor polymorphism: is this necessary for the best clinical management of hypogonadism?

Science.gov (United States)

Francomano, Davide; Greco, Emanuela A; Lenzi, Andrea; Aversa, Antonio

2013-10-01

It is controversial whether or not testing the length of the androgen receptor polymorphism in clinical practice is useful for correct diagnosis and treatment of hypogonadism. To describe the molecular and clinical implications of testing the length of the androgen receptor polymorphism for treatment of hypogonadism in both male and female subjects. A systematic Medline search was conducted using several terms related to and including the terms "androgen receptor," "CAG-repeat polymorphism," "male hypogonadism," "female hypogonadism," and "neurodegenerative disease." Clinical evidence that demonstrates the importance of CAG repeat number investigation in male and female hypogonadism. A thorough review of the clinical utility of CAG repeat polymorphism investigation in men and women with hypogonadism is presented. The role of AR CAG repeat number investigation in hypogonadism (male and female) is not yet established in the clinical practice. In both sexes, a role during clinical management of hormonal replacement therapies may be hypothesized, but the CAG repeat number's relationship with the presence or absence of hypogonadal symptoms remains unclear. Pharmacogenomic investigations of the AR polymorphism may be a future option to tailor testosterone titration individually and to better identify subjects as potentially more or less responsive to treatments; also, investigation may be important to individually predict beneficial and side effects in special subpopulations, specifically, obese men and postmenopausal women. © 2013 International Society for Sexual Medicine.

Temperature-controlled transfer and self-wiring for multi-color light-emitting diode arrays

International Nuclear Information System (INIS)

Onoe, Hiroaki; Nakai, Akihito; Iwase, Eiji; Matsumoto, Kiyoshi; Shimoyama, Isao

2009-01-01

We propose an integration method for arranging light-emitting diode (LED) bare chips on a flexible substrate for multi-color inorganic LED displays. The LED bare chips (240 µm × 240 µm × 75 µm), which were diced on an adhesive sheet by the manufacturer, were transferred to a flexible polyimide substrate by our temperature-controlled transfer (TCT) and self-wiring (SW) processes. In these processes, low-melting point solder (LMPS) and poly-(ethylene glycol) (PEG) worked as adhesive layers for the LED chips during the TCT processes, and the adhesion force of the LMPS and PEG layers was controlled by changing the temperature to melt and solidify the layers. After the TCT processes, electrical connection between the transferred LED chips and the flexible substrate was automatically established via the SW process, by using the surface tension of the melted LMPS. This TCT/SW method enabled us to (i) handle arrays of commercially available bare chips, (ii) arrange multiple types of chips on the circuit substrate by simply repeating the TCT processes and (iii) establish electrical connection between the chips and the substrate automatically. Applying this transfer printing and wiring method, we experimentally demonstrated a 5-by-5 flexible LED array and a two-color (blue and green) LED array

The EUROBALL array

International Nuclear Information System (INIS)

Rossi Alvarez, C.

1998-01-01

The quality of the multidetector array EUROBALL is described, with emphasis on the history and formal organization of the related European collaboration. The detector layout is presented together with the electronics and Data Acquisition capabilities. The status of the instrument, its performances and the main features of some recently developed ancillary detectors will also be described. The EUROBALL array is operational in Legnaro National Laboratory (Italy) since April 1997 and is expected to run up to November 1998. The array represents a significant improvement in detector efficiency and sensitivity with respect to the previous generation of multidetector arrays

Selecting Optimal Feature Set in High-Dimensional Data by Swarm Search

Directory of Open Access Journals (Sweden)

Simon Fong

2013-01-01

Full Text Available Selecting the right set of features from data of high dimensionality for inducing an accurate classification model is a tough computational challenge. It is almost a NP-hard problem as the combinations of features escalate exponentially as the number of features increases. Unfortunately in data mining, as well as other engineering applications and bioinformatics, some data are described by a long array of features. Many feature subset selection algorithms have been proposed in the past, but not all of them are effective. Since it takes seemingly forever to use brute force in exhaustively trying every possible combination of features, stochastic optimization may be a solution. In this paper, we propose a new feature selection scheme called Swarm Search to find an optimal feature set by using metaheuristics. The advantage of Swarm Search is its flexibility in integrating any classifier into its fitness function and plugging in any metaheuristic algorithm to facilitate heuristic search. Simulation experiments are carried out by testing the Swarm Search over some high-dimensional datasets, with different classification algorithms and various metaheuristic algorithms. The comparative experiment results show that Swarm Search is able to attain relatively low error rates in classification without shrinking the size of the feature subset to its minimum.

Optical networks for wideband sensor array

Science.gov (United States)

Sheng, Lin Horng

2011-12-01

This thesis presents the realization of novel systems for optical sensing networks with an array of long-period grating (LPG) sensors. As a launching point of the thesis, the motivation to implement optical sensing network in precisely catering LPG sensors is presented. It highlights the flexibility of the sensing network to act as the foundation in order to boost the application of the various LPG sensor design in biological and chemical sensing. After the thorough study on the various optical sensing networks, sub-carrier multiplexing (SCM) and optical time division multiplexing (OTDM) schemes are adopted in conjunction with tunable laser source (TLS) to facilitate simultaneous interrogation of the LPG sensors array. In fact, these systems are distinct to have the capability to accommodate wideband optical sensors. Specifically, the LPG sensors which is in 20nm bandwidth are identified to operate in these systems. The working principles of the systems are comprehensively elucidated in this thesis. It highlights the mathematical approach to quantify the experimental setup of the optical sensing network. Additionally, the system components of the designs are identified and methodically characterized so that the components well operate in the designed environment. A mockup has been setup to demonstrate the application in sensing of various liquid indices and analyse the response of the LPG sensors in order to evaluate the performance of the systems. Eventually, the resemblance of the demultiplexed spectral response to the pristine spectral response are quantified to have excellent agreement. Finally, the promising result consistency of the systems is verified through repeatability test.

A Large Complement of the Predicted Arabidopsis ARM Repeat Proteins Are Members of the U-Box E3 Ubiquitin Ligase Family1[w

Science.gov (United States)

Mudgil, Yashwanti; Shiu, Shin-Han; Stone, Sophia L.; Salt, Jennifer N.; Goring, Daphne R.

2004-01-01

The Arabidopsis genome was searched to identify predicted proteins containing armadillo (ARM) repeats, a motif known to mediate protein-protein interactions in a number of different animal proteins. Using domain database predictions and models generated in this study, 108 Arabidopsis proteins were identified that contained a minimum of two ARM repeats with the majority of proteins containing four to eight ARM repeats. Clustering analysis showed that the 108 predicted Arabidopsis ARM repeat proteins could be divided into multiple groups with wide differences in their domain compositions and organizations. Interestingly, 41 of the 108 Arabidopsis ARM repeat proteins contained a U-box, a motif present in a family of E3 ligases, and these proteins represented the largest class of Arabidopsis ARM repeat proteins. In 14 of these U-box/ARM repeat proteins, there was also a novel conserved domain identified in the N-terminal region. Based on the phylogenetic tree, representative U-box/ARM repeat proteins were selected for further study. RNA-blot analyses revealed that these U-box/ARM proteins are expressed in a variety of tissues in Arabidopsis. In addition, the selected U-box/ARM proteins were found to be functional E3 ubiquitin ligases. Thus, these U-box/ARM proteins represent a new family of E3 ligases in Arabidopsis. PMID:14657406

Target-present guessing as a function of target prevalence and accumulated information in visual search.

Science.gov (United States)

Peltier, Chad; Becker, Mark W

2017-05-01

Target prevalence influences visual search behavior. At low target prevalence, miss rates are high and false alarms are low, while the opposite is true at high prevalence. Several models of search aim to describe search behavior, one of which has been specifically intended to model search at varying prevalence levels. The multiple decision model (Wolfe & Van Wert, Current Biology, 20(2), 121--124, 2010) posits that all searches that end before the observer detects a target result in a target-absent response. However, researchers have found very high false alarms in high-prevalence searches, suggesting that prevalence rates may be used as a source of information to make "educated guesses" after search termination. Here, we further examine the ability for prevalence level and knowledge gained during visual search to influence guessing rates. We manipulate target prevalence and the amount of information that an observer accumulates about a search display prior to making a response to test if these sources of evidence are used to inform target present guess rates. We find that observers use both information about target prevalence rates and information about the proportion of the array inspected prior to making a response allowing them to make an informed and statistically driven guess about the target's presence.

The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats

Directory of Open Access Journals (Sweden)

Vergnaud Gilles

2007-05-01

Full Text Available Abstract Background In Archeae and Bacteria, the repeated elements called CRISPRs for "clustered regularly interspaced short palindromic repeats" are believed to participate in the defence against viruses. Short sequences called spacers are stored in-between repeated elements. In the current model, motifs comprising spacers and repeats may target an invading DNA and lead to its degradation through a proposed mechanism similar to RNA interference. Analysis of intra-species polymorphism shows that new motifs (one spacer and one repeated element are added in a polarised fashion. Although their principal characteristics have been described, a lot remains to be discovered on the way CRISPRs are created and evolve. As new genome sequences become available it appears necessary to develop automated scanning tools to make available CRISPRs related information and to facilitate additional investigations. Description We have produced a program, CRISPRFinder, which identifies CRISPRs and extracts the repeated and unique sequences. Using this software, a database is constructed which is automatically updated monthly from newly released genome sequences. Additional tools were created to allow the alignment of flanking sequences in search for similarities between different loci and to build dictionaries of unique sequences. To date, almost six hundred CRISPRs have been identified in 475 published genomes. Two Archeae out of thirty-seven and about half of Bacteria do not possess a CRISPR. Fine analysis of repeated sequences strongly supports the current view that new motifs are added at one end of the CRISPR adjacent to the putative promoter. Conclusion It is hoped that availability of a public database, regularly updated and which can be queried on the web will help in further dissecting and understanding CRISPR structure and flanking sequences evolution. Subsequent analyses of the intra-species CRISPR polymorphism will be facilitated by CRISPRFinder and the

Cosmology from CMB Polarization with POLARBEAR and the Simons Array

Science.gov (United States)

Barron, Darcy; POLARBEAR Collaboration

2018-01-01

POLARBEAR is a cosmic microwave background (CMB) polarization experiment located in the Atacama desert in Chile. The science goals of the POLARBEAR project are to do a deep search for CMB B-mode polarization created by inflationary gravitational waves, as well as characterize the CMB B-mode signal from gravitational lensing. POLARBEAR-1 started observations in 2012, and the POLARBEAR team has published a series of results from its first season of observations, including the first measurement of a non-zero B-mode polarization angular power spectrum, measured at sub-degree scales where the dominant signal is gravitational lensing of the CMB. Recently, we released an improved measurement of the B-mode polarization power spectrum, improving our band-power uncertainties by a factor of two, by adding new data from our second observing season and re-analyzing the combined data set.To further improve on these measurements, POLARBEAR is expanding to include an additional two telescopes with multi-chroic receivers observing at 95, 150, 220, and 270 GHz, known as the Simons Array. With high sensitivity and large sky coverage, the Simons Array will create a detailed survey of B-mode polarization, and its spectral information will be used to extract the CMB signal from astrophysical foregrounds. We will present the latest POLARBEAR results, as well as the status of development of the Simons Array and its expected capabilities.

The low-frequency array (LOFAR): opening a new window on the universe

Science.gov (United States)

Kassim, N. E.; Lazio, T. J. W.; Ray, P. S.; Crane, P. C.; Hicks, B. C.; Stewart, K. P.; Cohen, A. S.; Lane, W. M.

2004-12-01

We present an overview of the low-frequency array (LOFAR) that will open a window on one of the last and most poorly explored regions of the electromagnetic spectrum. LOFAR will be a large (baselines up to 400 km), low-frequency (ν˜10-240MHz) aperture synthesis array with large collecting area ( ˜106m2 at 15MHz) and high resolution ( ˜1.5″ at 100 MHz), and will provide sub-mJy sensitivity across much of its operating range. LOFAR will be a powerful instrument for solar system and planetary science applications as reviewed by papers in this monogram. Key astrophysical science drivers include acceleration, turbulence, and propagation in the galactic interstellar medium, exploring the high red-shift universe and transient phenomena, as well as searching for the red-shifted signature of neutral hydrogen from the cosmologically important epoch of re-ionization.

Use of ultrasonic array method for positioning multiple partial discharge sources in transformer oil.

Science.gov (United States)

Xie, Qing; Tao, Junhan; Wang, Yongqiang; Geng, Jianghai; Cheng, Shuyi; Lü, Fangcheng

2014-08-01

Fast and accurate positioning of partial discharge (PD) sources in transformer oil is very important for the safe, stable operation of power systems because it allows timely elimination of insulation faults. There is usually more than one PD source once an insulation fault occurs in the transformer oil. This study, which has both theoretical and practical significance, proposes a method of identifying multiple PD sources in the transformer oil. The method combines the two-sided correlation transformation algorithm in the broadband signal focusing and the modified Gerschgorin disk estimator. The method of classification of multiple signals is used to determine the directions of arrival of signals from multiple PD sources. The ultrasonic array positioning method is based on the multi-platform direction finding and the global optimization searching. Both the 4 × 4 square planar ultrasonic sensor array and the ultrasonic array detection platform are built to test the method of identifying and positioning multiple PD sources. The obtained results verify the validity and the engineering practicability of this method.

Storage array reflection considerations

International Nuclear Information System (INIS)

Haire, M.J.; Jordan, W.C.; Taylor, R.G.

1997-01-01

The assumptions used for reflection conditions of single containers are fairly well established and consistently applied throughout the industry in nuclear criticality safety evaluations. Containers are usually considered to be either fully water reflected (i.e., surrounded by 6 to 12 in. of water) for safety calculations or reflected by 1 in. of water for nominal (structural material and air) conditions. Tables and figures are usually available for performing comparative evaluations of containers under various loading conditions. Reflection considerations used for evaluating the safety of storage arrays of fissile material are not as well established. When evaluating arrays, it has become more common for analysts to use calculations to demonstrate the safety of the array configuration. In performing these calculations, the analyst has considerable freedom concerning the assumptions made for modeling the reflection of the array. Considerations are given for the physical layout of the array with little or no discussion (or demonstration) of what conditions are bounded by the assumed reflection conditions. For example, an array may be generically evaluated by placing it in a corner of a room in which the opposing walls are far away. Typically, it is believed that complete flooding of the room is incredible, so the array is evaluated for various levels of water mist interspersed among array containers. This paper discusses some assumptions that are made regarding storage array reflection

Cascading Constrained 2-D Arrays using Periodic Merging Arrays

DEFF Research Database (Denmark)

Forchhammer, Søren; Laursen, Torben Vaarby

2003-01-01

We consider a method for designing 2-D constrained codes by cascading finite width arrays using predefined finite width periodic merging arrays. This provides a constructive lower bound on the capacity of the 2-D constrained code. Examples include symmetric RLL and density constrained codes...

Testing of focal plane arrays

International Nuclear Information System (INIS)

Merriam, J.D.

1988-01-01

Problems associated with the testing of focal plane arrays are briefly examined with reference to the instrumentation and measurement procedures. In particular, the approach and instrumentation used as the Naval Ocean Systems Center is presented. Most of the measurements are made with flooded illumination on the focal plane array. The array is treated as an ensemble of individual pixels, data being taken on each pixel and array averages and standard deviations computed for the entire array. Data maps are generated, showing the pixel data in the proper spatial position on the array and the array statistics

The time course of attentional deployment in contextual cueing.

Science.gov (United States)

Jiang, Yuhong V; Sigstad, Heather M; Swallow, Khena M

2013-04-01

The time course of attention is a major characteristic on which different types of attention diverge. In addition to explicit goals and salient stimuli, spatial attention is influenced by past experience. In contextual cueing, behaviorally relevant stimuli are more quickly found when they appear in a spatial context that has previously been encountered than when they appear in a new context. In this study, we investigated the time that it takes for contextual cueing to develop following the onset of search layout cues. In three experiments, participants searched for a T target in an array of Ls. Each array was consistently associated with a single target location. In a testing phase, we manipulated the stimulus onset asynchrony (SOA) between the repeated spatial layout and the search display. Contextual cueing was equivalent for a wide range of SOAs between 0 and 1,000 ms. The lack of an increase in contextual cueing with increasing cue durations suggests that as an implicit learning mechanism, contextual cueing cannot be effectively used until search begins.

Parallel database search and prime factorization with magnonic holographic memory devices

Energy Technology Data Exchange (ETDEWEB)

Khitun, Alexander [Electrical and Computer Engineering Department, University of California - Riverside, Riverside, California 92521 (United States)

2015-12-28

In this work, we describe the capabilities of Magnonic Holographic Memory (MHM) for parallel database search and prime factorization. MHM is a type of holographic device, which utilizes spin waves for data transfer and processing. Its operation is based on the correlation between the phases and the amplitudes of the input spin waves and the output inductive voltage. The input of MHM is provided by the phased array of spin wave generating elements allowing the producing of phase patterns of an arbitrary form. The latter makes it possible to code logic states into the phases of propagating waves and exploit wave superposition for parallel data processing. We present the results of numerical modeling illustrating parallel database search and prime factorization. The results of numerical simulations on the database search are in agreement with the available experimental data. The use of classical wave interference may results in a significant speedup over the conventional digital logic circuits in special task data processing (e.g., √n in database search). Potentially, magnonic holographic devices can be implemented as complementary logic units to digital processors. Physical limitations and technological constrains of the spin wave approach are also discussed.

Parallel database search and prime factorization with magnonic holographic memory devices

Science.gov (United States)

Khitun, Alexander

2015-12-01

In this work, we describe the capabilities of Magnonic Holographic Memory (MHM) for parallel database search and prime factorization. MHM is a type of holographic device, which utilizes spin waves for data transfer and processing. Its operation is based on the correlation between the phases and the amplitudes of the input spin waves and the output inductive voltage. The input of MHM is provided by the phased array of spin wave generating elements allowing the producing of phase patterns of an arbitrary form. The latter makes it possible to code logic states into the phases of propagating waves and exploit wave superposition for parallel data processing. We present the results of numerical modeling illustrating parallel database search and prime factorization. The results of numerical simulations on the database search are in agreement with the available experimental data. The use of classical wave interference may results in a significant speedup over the conventional digital logic circuits in special task data processing (e.g., √n in database search). Potentially, magnonic holographic devices can be implemented as complementary logic units to digital processors. Physical limitations and technological constrains of the spin wave approach are also discussed.

Parallel database search and prime factorization with magnonic holographic memory devices

International Nuclear Information System (INIS)

Khitun, Alexander

2015-01-01

In this work, we describe the capabilities of Magnonic Holographic Memory (MHM) for parallel database search and prime factorization. MHM is a type of holographic device, which utilizes spin waves for data transfer and processing. Its operation is based on the correlation between the phases and the amplitudes of the input spin waves and the output inductive voltage. The input of MHM is provided by the phased array of spin wave generating elements allowing the producing of phase patterns of an arbitrary form. The latter makes it possible to code logic states into the phases of propagating waves and exploit wave superposition for parallel data processing. We present the results of numerical modeling illustrating parallel database search and prime factorization. The results of numerical simulations on the database search are in agreement with the available experimental data. The use of classical wave interference may results in a significant speedup over the conventional digital logic circuits in special task data processing (e.g., √n in database search). Potentially, magnonic holographic devices can be implemented as complementary logic units to digital processors. Physical limitations and technological constrains of the spin wave approach are also discussed

Repeatability of visual acuity measurement.

Science.gov (United States)

Raasch, T W; Bailey, I L; Bullimore, M A

1998-05-01

This study investigates features of visual acuity chart design and acuity testing scoring methods which affect the validity and repeatability of visual acuity measurements. Visual acuity was measured using the Sloan and British Standard letter series, and Landolt rings. Identifiability of the different letters as a function of size was estimated, and expressed in the form of frequency-of-seeing curves. These functions were then used to simulate acuity measurements with a variety of chart designs and scoring criteria. Systematic relationships exist between chart design parameters and acuity score, and acuity score repeatability. In particular, an important feature of a chart, that largely determines the repeatability of visual acuity measurement, is the amount of size change attributed to each letter. The methods used to score visual acuity performance also affect repeatability. It is possible to evaluate acuity score validity and repeatability using the statistical principles discussed here.

Artificial Roughness Encoding with a Bio-inspired MEMS-based Tactile Sensor Array

Directory of Open Access Journals (Sweden)

Calogero Maria Oddo

2009-04-01

Full Text Available A compliant 2x2 tactile sensor array was developed and investigated for roughness encoding. State of the art cross shape 3D MEMS sensors were integrated with polymeric packaging providing in total 16 sensitive elements to external mechanical stimuli in an area of about 20 mm2, similarly to the SA1 innervation density in humans. Experimental analysis of the bio-inspired tactile sensor array was performed by using ridged surfaces, with spatial periods from 2.6 mm to 4.1 mm, which were indented with regulated 1N normal force and stroked at constant sliding velocity from 15 mm/s to 48 mm/s. A repeatable and expected frequency shift of the sensor outputs depending on the applied stimulus and on its scanning velocity was observed between 3.66 Hz and 18.46 Hz with an overall maximum error of 1.7%. The tactile sensor could also perform contact imaging during static stimulus indentation. The experiments demonstrated the suitability of this approach for the design of a roughness encoding tactile sensor for an artificial fingerpad.

Reduced-Complexity Direction of Arrival Estimation Using Real-Valued Computation with Arbitrary Array Configurations

Directory of Open Access Journals (Sweden)

Feng-Gang Yan

2018-01-01

Full Text Available A low-complexity algorithm is presented to dramatically reduce the complexity of the multiple signal classification (MUSIC algorithm for direction of arrival (DOA estimation, in which both tasks of eigenvalue decomposition (EVD and spectral search are implemented with efficient real-valued computations, leading to about 75% complexity reduction as compared to the standard MUSIC. Furthermore, the proposed technique has no dependence on array configurations and is hence suitable for arbitrary array geometries, which shows a significant implementation advantage over most state-of-the-art unitary estimators including unitary MUSIC (U-MUSIC. Numerical simulations over a wide range of scenarios are conducted to show the performance of the new technique, which demonstrates that with a significantly reduced computational complexity, the new approach is able to provide a close accuracy to the standard MUSIC.

REPEATABILITY AND ACCURACY OF EXOPLANET ECLIPSE DEPTHS MEASURED WITH POST-CRYOGENIC SPITZER

Energy Technology Data Exchange (ETDEWEB)

Ingalls, James G.; Krick, J. E.; Carey, S. J.; Stauffer, John R.; Lowrance, Patrick J.; Grillmair, Carl J.; Capak, Peter; Glaccum, William; Laine, Seppo; Surace, Jason; Storrie-Lombardi, Lisa [Spitzer Science Center, California Institute of Technology, 1200 E California Boulevard, Mail Code 314-6, Pasadena, CA 91125 (United States); Buzasi, Derek [Department of Chemistry and Physics, Florida Gulf Coast University, Fort Myers, FL 33965 (United States); Deming, Drake [Department of Astronomy, University of Maryland, College Park, MD 20742-2421 (United States); Diamond-Lowe, Hannah; Stevenson, Kevin B. [Department of Astronomy and Astrophysics, University of Chicago, 5640 S Ellis Avenue, Chicago, IL 60637 (United States); Evans, Thomas M. [School of Physics, University of Exeter, EX4 4QL Exeter (United Kingdom); Morello, G. [Department of Physics and Astronomy, University College London, Gower Street, WC1 E6BT (United Kingdom); Wong, Ian, E-mail: ingalls@ipac.caltech.edu [Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125 (United States)

2016-08-01

We examine the repeatability, reliability, and accuracy of differential exoplanet eclipse depth measurements made using the InfraRed Array Camera (IRAC) on the Spitzer Space Telescope during the post-cryogenic mission. We have re-analyzed an existing 4.5 μ m data set, consisting of 10 observations of the XO-3b system during secondary eclipse, using seven different techniques for removing correlated noise. We find that, on average, for a given technique, the eclipse depth estimate is repeatable from epoch to epoch to within 156 parts per million (ppm). Most techniques derive eclipse depths that do not vary by more than a factor 3 of the photon noise limit. All methods but one accurately assess their own errors: for these methods, the individual measurement uncertainties are comparable to the scatter in eclipse depths over the 10 epoch sample. To assess the accuracy of the techniques as well as to clarify the difference between instrumental and other sources of measurement error, we have also analyzed a simulated data set of 10 visits to XO-3b, for which the eclipse depth is known. We find that three of the methods (BLISS mapping, Pixel Level Decorrelation, and Independent Component Analysis) obtain results that are within three times the photon limit of the true eclipse depth. When averaged over the 10 epoch ensemble,  5 out of 7 techniques come within 60 ppm of the true value. Spitzer exoplanet data, if obtained following current best practices and reduced using methods such as those described here, can measure repeatable and accurate single eclipse depths, with close to photon-limited results.

Expert searching in health librarianship: a literature review to identify international issues and Australian concerns.

Science.gov (United States)

Lasserre, Kaye

2012-03-01

The traditional role of health librarians as expert searchers is under challenge. The purpose of this review is to establish health librarians' views, practices and educational processes on expert searching. The search strategy was developed in LISTA and then customised for ten other databases: ALISA, PubMed, Embase, Scopus, Web of Science, CINAHL, ERIC, PsycINFO, Cochrane Library and Google Scholar. The search terms were (expert search* OR expert retriev* OR mediated search* OR information retriev*) AND librar*. The searches, completed in December 2010 and repeated in May 2011, were limited to English language publications from 2000 to 2011 (unless seminal works). Expert searching remains a key role for health librarians, especially for those supporting systematic reviews or employed as clinical librarians answering clinical questions. Although clients tend to be satisfied with searches carried out for them, improvements are required to effectively position the profession. Evidence-based guidelines, adherence to transparent standards, review of entry-level education requirements and a commitment to accredited, rigorous, ongoing professional development will ensure best practice. © 2012 The authors. Health Information and Libraries Journal © 2012 Health Libraries Group.

Rectangular Schlumberger resistivity arrays for delineating vadose zone clay-lined fractures in shallow tuff

International Nuclear Information System (INIS)

Miele, M.; Laymon, D.; Gilkeson, R.; Michelotti, R.

1996-01-01

Rectangular Schlumberger arrays can be used for 2-dimensional lateral profiling of apparent resistivity at a unique current electrode separation, hence single depth of penetration. Numerous apparent resistivity measurements are collected moving the potential electrodes (fixed MN spacing) within a rectangle of defined dimensions. The method provides a fast, cost-effective means for the collection of dense resistivity data to provide high-resolution information on subsurface hydrogeologic conditions. Several rectangular Schlumberger resistivity arrays were employed at Los Alamos National Laboratory (LANL) from 1989 through 1995 in an area adjacent to and downhill from an outfall pipe, septic tank, septic drainfield, and sump. Six rectangular arrays with 2 AB spacings were used to delineate lateral low resistivity anomalies that may be related to fractures that contain clay and/or vadose zone water. Duplicate arrays collected over a three year time period exhibited very good data repeatability. The properties of tritium make it an excellent groundwater tracer. Because tritium was present in discharged water from all of the anthropogenic sources in the vicinity it was used for this purpose. One major low resistivity anomaly correlates with relatively high tritium concentrations in the tuff. This was determined from borehole samples collected within and outside of the anomalous zone. The anomaly is interpreted to be due to fractures that contain clay from the soil profile. The clay was deposited in the fractures by aeolian processes and by surface water infiltration. The fractures likely served as a shallow vadose zone groundwater pathway

Searches for Large-Scale Anisotropy in the Arrival Directions of Cosmic Rays Detected above Energy of $10^{19}$ eV at the Pierre Auger Observatory and the Telescope Array

Energy Technology Data Exchange (ETDEWEB)

Aab, Alexander; et al,

2014-10-07

Spherical harmonic moments are well-suited for capturing anisotropy at any scale in the flux of cosmic rays. An unambiguous measurement of the full set of spherical harmonic coefficients requires full-sky coverage. This can be achieved by combining data from observatories located in both the northern and southern hemispheres. To this end, a joint analysis using data recorded at the Telescope Array and the Pierre Auger Observatory above 1019 eV is presented in this work. The resulting multipolar expansion of the flux of cosmic rays allows us to perform a series of anisotropy searches, and in particular to report on the angular power spectrum of cosmic rays above 1019 eV. No significant deviation from isotropic expectations is found throughout the analyses performed. Upper limits on the amplitudes of the dipole and quadrupole moments are derived as a function of the direction in the sky, varying between 7% and 13% for the dipole and between 7% and 10% for a symmetric quadrupole.

Phased-array radars

Science.gov (United States)

Brookner, E.

1985-02-01

The operating principles, technology, and applications of phased-array radars are reviewed and illustrated with diagrams and photographs. Consideration is given to the antenna elements, circuitry for time delays, phase shifters, pulse coding and compression, and hybrid radars combining phased arrays with lenses to alter the beam characteristics. The capabilities and typical hardware of phased arrays are shown using the US military systems COBRA DANE and PAVE PAWS as examples.

The “Carpet-3” air shower array to search for diffuse gamma rays with energy Eγ>100TeV

Science.gov (United States)

Dzhappuev, D. D.; I, V. B. Petkov V.; Kudzhaev, A. U.; Lidvansky, A. S.; Volchenko, V. I.; Volchenko, G. V.; Gorbacheva, E. A.; Dzaparova, I. M.; Klimenko, N. F.; Kurenya, A. N.; Mikhilova, O. I.; Khadzhiev, M. M.; Yanin, A. F.

2017-12-01

At present an experiment for measuring the flux of cosmic diffuse gamma rays with energy higher than 100 TeV (experiment “Carpet-3”) is being prepared at the Baksan Neutrino Observatory of the Institute for Nuclear Research, Russian Academy of Sciences. The preparation of the experiment implies considerable enlargement of the area of both muon detector and surface part of the shower array. At the moment the plastic scintillation counters with a total continuous area of 410 m2 are installed in the muon detector (MD) underground tunnels, and they are totally equipped with electronics. Adjusting of the counters and their electronic circuits is in progress. Six modules of shower detectors (out of twenty planned to be installed) have already been placed on the surface of the MD absorber. A new liquid scintillation detector is developed for modules of the ground -surface part of the array, whose characteristics are presented. It is shown that the “Carpet-3” air shower array will have the best sensitivity to the flux of primary gamma rays with energies in the range 100TeV - 1PeV, being quite competitive in gamma-ray astronomy at such energies.

An efficient route to Cu_2O nanorod array film for high-performance Li-ion batteries

International Nuclear Information System (INIS)

Yang, Yumei; Wang, Kun; Yang, Zeheng; Zhang, Yingmeng; Gu, Heyun; Zhang, Weixin; Li, Errui; Zhou, Chen

2016-01-01

Fabrication of well-organized one-dimensional nanostructured arrays on conducting substrates as binder free electrodes allows us to synergize and integrate multi-functionalities into lithium ion batteries. In this contribution, we report a metal-induced thermal reduction (MITR) method to prepare free-standing Cu_2O nanorod array film with average diameters of 400 ± 100 nm and lengths of several microns on copper substrates by direct thermal reduction of Cu(OH)_2 nanorod arrays on copper foils in nitrogen atmosphere at 500 °C. The presence of Cu substrates reduces the Cu(OH)_2 to Cu_2O and decreases the reduction temperature significantly through changing the reaction Gibbs energy. Compared with some previously-reported methods about thermal reduction, the MITR method is facile, controllable, efficient and low energy consumption. The free-standing Cu_2O nanorod array film on Cu substrates as anode can achieve high rate capability (315 mAh g"−"1 at 10 C) and good cyclability (358 mAh g"−"1 after 200 cycles at 1 C), demonstrating their excellent electrochemical performance in lithium ion batteries, which results from relatively faster electron and ion transport, easier electrolyte diffusion and better accommodation of strains from the repeated conversion reactions based on their one-dimensional nanostructured arrays. - Highlights: • A metal-induced thermal reduction method was used to prepare Cu_2O nanorod array film. • Copper substrate takes an important part in the conversion of Cu(OH)_2 to Cu_2O. • The Cu_2O films show excellent electrochemical properties as anode for Li-ion battery.

ISS Solar Array Management

Science.gov (United States)

Williams, James P.; Martin, Keith D.; Thomas, Justin R.; Caro, Samuel

2010-01-01

The International Space Station (ISS) Solar Array Management (SAM) software toolset provides the capabilities necessary to operate a spacecraft with complex solar array constraints. It monitors spacecraft telemetry and provides interpretations of solar array constraint data in an intuitive manner. The toolset provides extensive situational awareness to ensure mission success by analyzing power generation needs, array motion constraints, and structural loading situations. The software suite consists of several components including samCS (constraint set selector), samShadyTimers (array shadowing timers), samWin (visualization GUI), samLock (array motion constraint computation), and samJet (attitude control system configuration selector). It provides high availability and uptime for extended and continuous mission support. It is able to support two-degrees-of-freedom (DOF) array positioning and supports up to ten simultaneous constraints with intuitive 1D and 2D decision support visualizations of constraint data. Display synchronization is enabled across a networked control center and multiple methods for constraint data interpolation are supported. Use of this software toolset increases flight safety, reduces mission support effort, optimizes solar array operation for achieving mission goals, and has run for weeks at a time without issues. The SAM toolset is currently used in ISS real-time mission operations.

Sensor array signal processing

CERN Document Server

Naidu, Prabhakar S

2009-01-01

Chapter One: An Overview of Wavefields 1.1 Types of Wavefields and the Governing Equations 1.2 Wavefield in open space 1.3 Wavefield in bounded space 1.4 Stochastic wavefield 1.5 Multipath propagation 1.6 Propagation through random medium 1.7 ExercisesChapter Two: Sensor Array Systems 2.1 Uniform linear array (ULA) 2.2 Planar array 2.3 Distributed sensor array 2.4 Broadband sensor array 2.5 Source and sensor arrays 2.6 Multi-component sensor array2.7 ExercisesChapter Three: Frequency Wavenumber Processing 3.1 Digital filters in the w-k domain 3.2 Mapping of 1D into 2D filters 3.3 Multichannel Wiener filters 3.4 Wiener filters for ULA and UCA 3.5 Predictive noise cancellation 3.6 Exercises Chapter Four: Source Localization: Frequency Wavenumber Spectrum4.1 Frequency wavenumber spectrum 4.2 Beamformation 4.3 Capon's w-k spectrum 4.4 Maximum entropy w-k spectrum 4.5 Doppler-Azimuth Processing4.6 ExercisesChapter Five: Source Localization: Subspace Methods 5.1 Subspace methods (Narrowband) 5.2 Subspace methods (B...

Search for the neutrinoless ββ decay in 76Ge with the GERDA experiment

International Nuclear Information System (INIS)

Cattadori, C.; Knapp, M.; Kröninger, K.; Liu, X.; Pandola, L.; Pullia, A.; Tomei, C.; Ur, C.; Zocca, F.

2011-01-01

The GERmanium Detector Array, GERDA, [Gerda Collaboration, Abt I et al., Proposal, a (http://www.mpi-hd.mpg.de/ge76/home.html)] is designed to search for neutrinoless double beta (0νββ)-decay of 76 Ge. The importance of such a search is emphasized by the evidence of a non-zero neutrino mass from flavour oscillation experiments and by the recent claim [Klapdor-Kleingrothaus H V et al., Phys. Lett. B 586, 198 (2004)] based on data of the Heidelberg-Moscow experiment. GERDA will be installed in the Hall A of the Gran Sasso underground Laboratory (LNGS), Italy. The construction of GERDA will start in 2006.

Passive microfluidic array card and reader

Science.gov (United States)

Dugan, Lawrence Christopher [Modesto, CA; Coleman, Matthew A [Oakland, CA

2011-08-09

A microfluidic array card and reader system for analyzing a sample. The microfluidic array card includes a sample loading section for loading the sample onto the microfluidic array card, a multiplicity of array windows, and a transport section or sections for transporting the sample from the sample loading section to the array windows. The microfluidic array card reader includes a housing, a receiving section for receiving the microfluidic array card, a viewing section, and a light source that directs light to the array window of the microfluidic array card and to the viewing section.

Practical and Efficient Searching in Proteomics: A Cross Engine Comparison

Science.gov (United States)

Paulo, Joao A.

2014-01-01

Background Analysis of large datasets produced by mass spectrometry-based proteomics relies on database search algorithms to sequence peptides and identify proteins. Several such scoring methods are available, each based on different statistical foundations and thereby not producing identical results. Here, the aim is to compare peptide and protein identifications using multiple search engines and examine the additional proteins gained by increasing the number of technical replicate analyses. Methods A HeLa whole cell lysate was analyzed on an Orbitrap mass spectrometer for 10 technical replicates. The data were combined and searched using Mascot, SEQUEST, and Andromeda. Comparisons were made of peptide and protein identifications among the search engines. In addition, searches using each engine were performed with incrementing number of technical replicates. Results The number and identity of peptides and proteins differed across search engines. For all three search engines, the differences in proteins identifications were greater than the differences in peptide identifications indicating that the major source of the disparity may be at the protein inference grouping level. The data also revealed that analysis of 2 technical replicates can increase protein identifications by up to 10-15%, while a third replicate results in an additional 4-5%. Conclusions The data emphasize two practical methods of increasing the robustness of mass spectrometry data analysis. The data show that 1) using multiple search engines can expand the number of identified proteins (union) and validate protein identifications (intersection), and 2) analysis of 2 or 3 technical replicates can substantially expand protein identifications. Moreover, information can be extracted from a dataset by performing database searching with different engines and performing technical repeats, which requires no additional sample preparation and effectively utilizes research time and effort. PMID:25346847

Fostering repeat donations in Ghana.

Science.gov (United States)

Owusu-Ofori, S; Asenso-Mensah, K; Boateng, P; Sarkodie, F; Allain, J-P

2010-01-01

Most African countries are challenged in recruiting and retaining voluntary blood donors by cost and other complexities and in establishing and implementing national blood policies. The availability of replacement donors who are a cheaper source of blood has not enhanced repeat voluntary donor initiatives. An overview of activities for recruiting and retaining voluntary blood donors was carried out. Donor records from mobile sessions were reviewed from 2002 to 2008. A total of 71,701 blood donations; 45,515 (63.5%) being voluntary donations with 11,680 (25%) repeat donations were collected during the study period. Donations from schools and colleges contributed a steady 60% of total voluntary whilst radio station blood drives increased contribution from 10 to 27%. Though Muslim population is less than 20%, blood collection was above the 30-donation cost-effectiveness threshold with a repeat donation trend reaching 60%. In contrast Christian worshippers provided donations. Repeat donation trends amongst school donors and radio blood drives were 20% and 70% respectively. Repeat donations rates have been variable amongst different blood donor groups in Kumasi, Ghana. The impact of community leaders in propagating altruism cannot be overemphasized. Programs aiming at motivating replacement donors to be repeat donors should be developed and assessed. Copyright 2009 The International Association for Biologicals. All rights reserved.

Cognitive outcome in adolescents and young adults after repeat courses of antenatal corticosteroids.

Science.gov (United States)

Stålnacke, Johanna; Diaz Heijtz, Rochellys; Norberg, Hanna; Norman, Mikael; Smedler, Ann-Charlotte; Forssberg, Hans

2013-08-01

To investigate whether repeat courses of antenatal corticosteroids have long-term effects on cognitive and psychological functioning. In a prospective cohort study, 58 adolescents and young adults (36 males) who had been exposed to 2-9 weekly courses of betamethasone in utero were assessed with neuropsychological tests and behavior self-reports. Unexposed subjects (n = 44, 25 males) matched for age, sex, and gestational age at birth served as a comparison group. In addition, individuals exposed in utero to a single course (n = 25, 14 males) were included for dose-response analysis. Group differences were investigated using multilevel linear modeling. Mean scores obtained in 2 measures of attention and speed were significantly lower in subjects exposed to 2 or more antenatal corticosteroids courses (Symbol Search, P = .009; Digit Span Forward, P = .02), but these were not dose-dependent. Exposure to repeat courses of antenatal corticosteroids was not associated with general deficits in higher cognitive functions, self-reported attention, adaptability, or overall psychological function. Although this study indicates that repeat exposure to antenatal corticosteroids may have an impact on aspects of executive functioning, it does not provide support for the prevailing concern that such fetal exposure will have a major adverse impact on cognitive functions and psychological health later in life. Copyright © 2013 Mosby, Inc. All rights reserved.

Field computation for two-dimensional array transducers with limited diffraction array beams.

Science.gov (United States)

Lu, Jian-Yu; Cheng, Jiqi

2005-10-01

A method is developed for calculating fields produced with a two-dimensional (2D) array transducer. This method decomposes an arbitrary 2D aperture weighting function into a set of limited diffraction array beams. Using the analytical expressions of limited diffraction beams, arbitrary continuous wave (cw) or pulse wave (pw) fields of 2D arrays can be obtained with a simple superposition of these beams. In addition, this method can be simplified and applied to a 1D array transducer of a finite or infinite elevation height. For beams produced with axially symmetric aperture weighting functions, this method can be reduced to the Fourier-Bessel method studied previously where an annular array transducer can be used. The advantage of the method is that it is accurate and computationally efficient, especially in regions that are not far from the surface of the transducer (near field), where it is important for medical imaging. Both computer simulations and a synthetic array experiment are carried out to verify the method. Results (Bessel beam, focused Gaussian beam, X wave and asymmetric array beams) show that the method is accurate as compared to that using the Rayleigh-Sommerfeld diffraction formula and agrees well with the experiment.

Dark matter in the Reticulum II dSph: a radio search

Science.gov (United States)

Regis, Marco; Richter, Laura; Colafrancesco, Sergio

2017-07-01

We present a deep radio search in the Reticulum II dwarf spheroidal (dSph) galaxy performed with the Australia Telescope Compact Array. Observations were conducted at 16 cm wavelength, with an rms sensitivity of 0.01 mJy/beam, and with the goal of searching for synchrotron emission induced by annihilation or decay of weakly interacting massive particles (WIMPs). Data were complemented with observations on large angular scales taken with the KAT-7 telescope. We find no evidence for a diffuse emission from the dSph and we derive competitive bounds on the WIMP properties. In addition, we detect more than 200 new background radio sources. Among them, we show there are two compelling candidates for being the radio counterpart of the possible γ-ray emission reported by other groups using Fermi-LAT data.

Dark matter in the Reticulum II dSph: a radio search

International Nuclear Information System (INIS)

Regis, Marco; Richter, Laura; Colafrancesco, Sergio

2017-01-01

We present a deep radio search in the Reticulum II dwarf spheroidal (dSph) galaxy performed with the Australia Telescope Compact Array. Observations were conducted at 16 cm wavelength, with an rms sensitivity of 0.01 mJy/beam, and with the goal of searching for synchrotron emission induced by annihilation or decay of weakly interacting massive particles (WIMPs). Data were complemented with observations on large angular scales taken with the KAT-7 telescope. We find no evidence for a diffuse emission from the dSph and we derive competitive bounds on the WIMP properties. In addition, we detect more than 200 new background radio sources. Among them, we show there are two compelling candidates for being the radio counterpart of the possible γ-ray emission reported by other groups using Fermi-LAT data.

Memory and visual search in naturalistic 2D and 3D environments.

Science.gov (United States)

Li, Chia-Ling; Aivar, M Pilar; Kit, Dmitry M; Tong, Matthew H; Hayhoe, Mary M

2016-06-01

The role of memory in guiding attention allocation in daily behaviors is not well understood. In experiments with two-dimensional (2D) images, there is mixed evidence about the importance of memory. Because the stimulus context in laboratory experiments and daily behaviors differs extensively, we investigated the role of memory in visual search, in both two-dimensional (2D) and three-dimensional (3D) environments. A 3D immersive virtual apartment composed of two rooms was created, and a parallel 2D visual search experiment composed of snapshots from the 3D environment was developed. Eye movements were tracked in both experiments. Repeated searches for geometric objects were performed to assess the role of spatial memory. Subsequently, subjects searched for realistic context objects to test for incidental learning. Our results show that subjects learned the room-target associations in 3D but less so in 2D. Gaze was increasingly restricted to relevant regions of the room with experience in both settings. Search for local contextual objects, however, was not facilitated by early experience. Incidental fixations to context objects do not necessarily benefit search performance. Together, these results demonstrate that memory for global aspects of the environment guides search by restricting allocation of attention to likely regions, whereas task relevance determines what is learned from the active search experience. Behaviors in 2D and 3D environments are comparable, although there is greater use of memory in 3D.

Towards gamma-ray astronomy with timing arrays

International Nuclear Information System (INIS)

Tluczykont, M; Epimakhov, S; Astapov, I; Barbashina, N; Beregnev, S; Eremin, T; Bogdanov, A; Bogorodskii, D; Budnev, N; Chvalaev, O; Dyachok, A; Gafarov, A; Gress, O; Gress, T; Boreyko, V; Gorbunov, N; Grebenyuk, V; Grinyuk, A; Brückner, M; Chiavassa, A

2015-01-01

The gamma-ray energy regime beyond 10 TeV is crucial for the search for the most energetic Galactic accelerators. The energy spectra of most known gamma-ray emitters only reach up to few 10s of TeV, with 80 TeV from the Crab Nebula being the highest energy so far observed significantly. Uncovering their spectral shape up to few 100 TeV could answer the question whether some of these objects are cosmic ray Pevatrons, i.e. Galactic PeV accelerators.Sensitive observations in this energy range and beyond require very large effective detector areas of several 10s to 100 square-km. While imaging air Cherenkov telescopes have proven to be the instruments of choice in the GeV to TeV energy range, very large area telescope arrays are limited by the number of required readout channels per instrumented square-km (due to the large number of channels per telescope). Alternatively, the shower-front sampling technique allows to instrument large effective areas and also naturally provides large viewing angles of the instrument. Solely measuring the shower front light density and timing (hence timing- arrays), the primary particle properties are reconstructed on the basis of the measured lateral density function and the shower front arrival times. This presentation gives an overview of the technique, its goals, and future perspective. (paper)

An Arecibo Search for Pulsars and Transient Sources in M33

Science.gov (United States)

Bhat, N. D. R.; Cordes, J. M.; Cox, P. J.; Deneva, J. S.; Hankins, T. H.; Lazio, T. J. W.; McLaughlin, M. A.

2011-05-01

We report on a systematic and sensitive search for pulsars and transient sources in the nearby spiral galaxy M33, conducted at 1.4 GHz with the Arecibo telescope's seven-beam receiver system, ALFA. Data were searched for both periodic and aperiodic sources, up to 1000 pc cm-3 in dispersion measure and on timescales from ~50 μs to several seconds. The galaxy was sampled with 12 ALFA pointings, or 84 pixels in total, each of which was searched for 2-3 hr. We describe the observations, search methodologies, and analysis strategies applicable to multibeam systems, and comment on the data quality and statistics of spurious events that arise due to radio frequency interference. While these searches have not led to any conclusive signals of periodic or transient nature that originate in the galaxy, they illustrate some of the underlying challenges and difficulties in such searches and the efficacy of simultaneous multiple beams in the analysis of search output. The implied limits are lsim5 μJy Mpc2 in luminosity (at 1400 MHz) for periodic sources in M33 with duty cycles lsim5%. For short-duration transient signals (with pulse widths lsim100 μs ), the limiting peak flux density is 100 mJy, which would correspond to a 5σ detection of bright giant pulses (~20 kJy) from Crab-like pulsars if located at the distance of M33. We discuss the implications of our null results for various source populations within the galaxy and comment on the future prospects to conduct even more sensitive searches with the upcoming next-generation instruments including the Square Kilometer Array and its pathfinders.

AN ARECIBO SEARCH FOR PULSARS AND TRANSIENT SOURCES IN M33

International Nuclear Information System (INIS)

Bhat, N. D. R.; Cox, P. J.; Cordes, J. M.; Deneva, J. S.; Hankins, T. H.; Lazio, T. J. W.; McLaughlin, M. A.

2011-01-01

We report on a systematic and sensitive search for pulsars and transient sources in the nearby spiral galaxy M33, conducted at 1.4 GHz with the Arecibo telescope's seven-beam receiver system, ALFA. Data were searched for both periodic and aperiodic sources, up to 1000 pc cm -3 in dispersion measure and on timescales from ∼50 μs to several seconds. The galaxy was sampled with 12 ALFA pointings, or 84 pixels in total, each of which was searched for 2-3 hr. We describe the observations, search methodologies, and analysis strategies applicable to multibeam systems, and comment on the data quality and statistics of spurious events that arise due to radio frequency interference. While these searches have not led to any conclusive signals of periodic or transient nature that originate in the galaxy, they illustrate some of the underlying challenges and difficulties in such searches and the efficacy of simultaneous multiple beams in the analysis of search output. The implied limits are ∼ 2 in luminosity (at 1400 MHz) for periodic sources in M33 with duty cycles ∼<5%. For short-duration transient signals (with pulse widths ∼<100 μs ), the limiting peak flux density is 100 mJy, which would correspond to a 5σ detection of bright giant pulses (∼20 kJy) from Crab-like pulsars if located at the distance of M33. We discuss the implications of our null results for various source populations within the galaxy and comment on the future prospects to conduct even more sensitive searches with the upcoming next-generation instruments including the Square Kilometer Array and its pathfinders.

Josephson junction arrays

International Nuclear Information System (INIS)

Bindslev Hansen, J.; Lindelof, P.E.

1985-01-01

In this review we intend to cover recent work involving arrays of Josephson junctions. The work on such arrays falls naturally into three main areas of interest: 1. Technical applications of Josephson junction arrays for high-frequency devices. 2. Experimental studies of 2-D model systems (Kosterlitz-Thouless phase transition, commensurate-incommensurate transition in frustrated (flux) lattices). 3. Investigations of phenomena associated with non-equilibrium superconductivity in and around Josephson junctions (with high current density). (orig./BUD)

Mass accretion and nested array dynamics from Ni-Clad Ti-Al wire array Z pinches

International Nuclear Information System (INIS)

Jones, Brent Manley; Jennings, Christopher A.; Coverdale, Christine Anne; Cuneo, Michael Edward; Maron, Yitzhak; LePell, Paul David; Deeney, Christopher

2010-01-01

Analysis of 50 mm diameter wire arrays at the Z Accelerator has shown experimentally the accretion of mass in a stagnating z pinch and provided insight into details of the radiating plasma species and plasma conditions. This analysis focused on nested wire arrays with a 2:1 (outeninner) mass, radius, and wire number ratio where Al wires were fielded on the outer array and Ni-clad Ti wires were fielded on the inner array.In this presentation, we will present analysis of data from other mixed Al/Ni-clad Ti configurations to further evaluate nested wire array dynamics and mass accretion. These additional configurations include the opposite configuration to that described above (Ni-clad Ti wires on the outer array, with Al wires on the inner array) as well as higher wire number Al configurations fielded to vary the interaction of the two arrays. These same variations were also assessed for a smaller diameter nested array configuration (40 mm). Variations in the emitted radiation and plasma conditions will be presented, along with a discussion of what the results indicate about the nested array dynamics. Additional evidence for mass accretion will also be presented.

Repeated DNA sequences in fungi

Energy Technology Data Exchange (ETDEWEB)

Dutta, S K

1974-11-01

Several fungal species, representatives of all broad groups like basidiomycetes, ascomycetes and phycomycetes, were examined for the nature of repeated DNA sequences by DNA:DNA reassociation studies using hydroxyapatite chromatography. All of the fungal species tested contained 10 to 20 percent repeated DNA sequences. There are approximately 100 to 110 copies of repeated DNA sequences of approximately 4 x 10/sup 7/ daltons piece size of each. Repeated DNA sequence homoduplexes showed on average 5/sup 0/C difference of T/sub e/50 (temperature at which 50 percent duplexes dissociate) values from the corresponding homoduplexes of unfractionated whole DNA. It is suggested that a part of repetitive sequences in fungi constitutes mitochondrial DNA and a part of it constitutes nuclear DNA. (auth)

An Application of Artificial Intelligence for the Joint Estimation of Amplitude and Two-Dimensional Direction of Arrival of Far Field Sources Using 2-L-Shape Array

Directory of Open Access Journals (Sweden)

Fawad Zaman

2013-01-01

Full Text Available An easy and efficient approach, based on artificial intelligence technique, is proposed to jointly estimate the amplitude, elevation, and azimuth angles of far field sources impinging on 2-L-shape array. In these proposed artificial intelligence techniques, the metaheuristics based on genetic algorithm and simulated annealing are used as global optimizers assisted with rapid local version of pattern search for optimization of the adaptive parameters. The performance metric is employed on a fitness evaluation function depending on mean square error which is optimum and requires single snapshot to converge. The proposed approaches are easy to understand, and simple to implement; the genetic algorithm specifically hybridized with pattern search generates fairly good results. The comparison of the given schemes is carried out with 1-L-shape array, as well as, with parallel-shape array and is found to be in good agreement in terms of accuracy, convergence rate, computational complexity, and mean square error. The effectiveness and efficiency of the given schemes are examined through Monte Carlo simulations and their inclusive statistical analysis.

A Serendipitous MWA Search for Narrowband Signals from ‘Oumuamua

Science.gov (United States)

Tingay, S. J.; Kaplan, D. L.; Lenc, E.; Croft, S.; McKinley, B.; Beardsley, A.; Crosse, B.; Emrich, D.; Franzen, T. M. O.; Gaensler, B. M.; Horsley, L.; Johnston-Hollitt, M.; Kenney, D.; Morales, M. F.; Pallot, D.; Steele, K.; Trott, C. M.; Walker, M.; Wayth, R. B.; Williams, A.; Wu, C.

2018-04-01

We examine data from the Murchison Widefield Array (MWA) in the frequency range 72–102 MHz for a field of view that serendipitously contained the interstellar object ‘Oumuamua on 2017 November 28. Observations took place with a time resolution of 0.5 s and a frequency resolution of 10 kHz. Based on the interesting but highly unlikely suggestion that ‘Oumuamua is an interstellar spacecraft, due to some unusual orbital and morphological characteristics, we examine our data for signals that might indicate the presence of intelligent life associated with ‘Oumuamua. We searched our radio data for (1) impulsive narrowband signals, (2) persistent narrowband signals, and (3) impulsive broadband signals. We found no such signals with nonterrestrial origins and make estimates of the upper limits on equivalent isotropic radiated power (EIRP) for these three cases of approximately 7 kW, 840 W, and 100 kW, respectively. These transmitter powers are well within the capabilities of human technologies, and are therefore plausible for alien civilizations. While the chances of positive detection in any given search for extraterrestrial intelligence (SETI) experiment are vanishingly small, the characteristics of new generation telescopes such as the MWA (and, in the future, the Square Kilometre Array) make certain classes of SETI experiments easy, or even a trivial by-product of astrophysical observations. This means that the future costs of SETI experiments are very low, allowing large target lists to partially balance the low probability of a positive detection.

CORRELATIONS OF THE ARRIVAL DIRECTIONS OF ULTRA-HIGH ENERGY COSMIC RAYS WITH EXTRAGALACTIC OBJECTS AS OBSERVED BY THE TELESCOPE ARRAY EXPERIMENT

Energy Technology Data Exchange (ETDEWEB)

Abu-Zayyad, T.; Allen, M.; Anderson, R.; Barcikowski, E.; Belz, J. W.; Bergman, D. R.; Blake, S. A.; Cady, R.; Hanlon, W. [High Energy Astrophysics Institute and Department of Physics and Astronomy, University of Utah, Salt Lake City, UT (United States); Aida, R. [Interdisciplinary Graduate School of Medicine and Engineering, University of Yamanashi, Kofu, Yamanashi (Japan); Azuma, R.; Fukuda, T. [Graduate School of Science and Engineering, Tokyo Institute of Technology, Meguro, Tokyo (Japan); Cheon, B. G.; Cho, E. J. [Department of Physics and The Research Institute of Natural Science, Hanyang University, Seongdong-gu, Seoul (Korea, Republic of); Chiba, J. [Department of Physics, Tokyo University of Science, Noda, Chiba (Japan); Chikawa, M. [Department of Physics, Kinki University, Higashi Osaka, Osaka (Japan); Cho, W. R. [Department of Physics, Yonsei University, Seodaemun-gu, Seoul (Korea, Republic of); Fujii, H. [Institute of Particle and Nuclear Studies, KEK, Tsukuba, Ibaraki (Japan); Fujii, T. [Graduate School of Science, Osaka City University, Osaka (Japan); Fukushima, M. [Institute for Cosmic Ray Research, University of Tokyo, Kashiwa, Chiba (Japan); and others

2013-11-10

We search for correlations between the positions of extragalactic objects and the arrival directions of ultra-high energy cosmic rays (UHECRs) with primary energy E ≥ 40 EeV as observed by the surface detector array of the Telescope Array (TA) experiment during the first 40 months of operation. We examine several public astronomical object catalogs, including the Veron-Cetty and Veron catalog of active galactic nuclei. We count the number of TA events correlated with objects in each catalog as a function of three parameters: the maximum angular separation between a TA event and an object, the minimum energy of the events, and the maximum redshift of the objects. We determine the combination of these parameters that maximizes the correlations, and we calculate the probability of having the same levels of correlations from an isotropic distribution of UHECR arrival directions. No statistically significant correlations are found when penalties for scanning over the above parameters and for searching in several catalogs are taken into account.

Topological characteristics of helical repeat proteins

NARCIS (Netherlands)

Groves, M R; Barford, D

The recent elucidation of protein structures based upon repeating amino acid motifs, including the armadillo motif, the HEAT motif and tetratricopeptide repeats, reveals that they belong to the class of helical repeat proteins. These proteins share the common property of being assembled from tandem

Carbon nanotube nanoelectrode arrays

Science.gov (United States)

Ren, Zhifeng; Lin, Yuehe; Yantasee, Wassana; Liu, Guodong; Lu, Fang; Tu, Yi

2008-11-18

The present invention relates to microelectode arrays (MEAs), and more particularly to carbon nanotube nanoelectrode arrays (CNT-NEAs) for chemical and biological sensing, and methods of use. A nanoelectrode array includes a carbon nanotube material comprising an array of substantially linear carbon nanotubes each having a proximal end and a distal end, the proximal end of the carbon nanotubes are attached to a catalyst substrate material so as to form the array with a pre-determined site density, wherein the carbon nanotubes are aligned with respect to one another within the array; an electrically insulating layer on the surface of the carbon nanotube material, whereby the distal end of the carbon nanotubes extend beyond the electrically insulating layer; a second adhesive electrically insulating layer on the surface of the electrically insulating layer, whereby the distal end of the carbon nanotubes extend beyond the second adhesive electrically insulating layer; and a metal wire attached to the catalyst substrate material.

a Search for Nucleon Decay with Multiple Muon Decays

Science.gov (United States)

Phillips, Thomas James

A search was made for nucleon decays which result in multiple delayed muon decays using the HPW (Harvard -Purdue-Wisconsin) water Cerenkov detector. The HPW detector consists of 680 metric tons of purified water instrumented with 704 five-inch photomultiplier tubes. The phototubes are situated on a volume array with a lattice spacing of approximately one meter, and the inside walls of the detector are lined with mirrors. This combination of mirrors and a volume array of phototubes gives the HPW detector a low trigger energy threshold and a high muon decay detection efficiency. The detector is surrounded by wire chambers to provide an active shield, and is located at a depth of 1500 meters-of-water-equivalent in the Silver King Mine in Park City, Utah. The entire HPW data set, consisting of 17.2 million events collec- ted during 282 live days between May 1983 and October 1984, was analyzed. No contained events with multiple muon decays were found in a 180 ton fiducial volume. This is consistent with the background rate from neutrino interactions, which is expected to be 0.7 (+OR-) 0.2 events. The calculated lower lifetime limit for the decay mode p (--->) (mu)('+)(mu)('+)(mu)('-) is: (tau)/B.R. = 1 x 10('31) years (90% C.L.). Limits are calculated for ten other proton decay modes and five bound neutron decay modes, most of which are around 4 x 10('30) years (90% C.L.). No previous studies have reported results from direct searches for eight of these modes.

Temporal stability of visual search-driven biometrics

Science.gov (United States)

Yoon, Hong-Jun; Carmichael, Tandy R.; Tourassi, Georgia

2015-03-01

Previously, we have shown the potential of using an individual's visual search pattern as a possible biometric. That study focused on viewing images displaying dot-patterns with different spatial relationships to determine which pattern can be more effective in establishing the identity of an individual. In this follow-up study we investigated the temporal stability of this biometric. We performed an experiment with 16 individuals asked to search for a predetermined feature of a random-dot pattern as we tracked their eye movements. Each participant completed four testing sessions consisting of two dot patterns repeated twice. One dot pattern displayed concentric circles shifted to the left or right side of the screen overlaid with visual noise, and participants were asked which side the circles were centered on. The second dot-pattern displayed a number of circles (between 0 and 4) scattered on the screen overlaid with visual noise, and participants were asked how many circles they could identify. Each session contained 5 untracked tutorial questions and 50 tracked test questions (200 total tracked questions per participant). To create each participant's "fingerprint", we constructed a Hidden Markov Model (HMM) from the gaze data representing the underlying visual search and cognitive process. The accuracy of the derived HMM models was evaluated using cross-validation for various time-dependent train-test conditions. Subject identification accuracy ranged from 17.6% to 41.8% for all conditions, which is significantly higher than random guessing (1/16 = 6.25%). The results suggest that visual search pattern is a promising, temporally stable personalized fingerprint of perceptual organization.

Temporal Stability of Visual Search-Driven Biometrics

Energy Technology Data Exchange (ETDEWEB)

Yoon, Hong-Jun [ORNL; Carmichael, Tandy [Tennessee Technological University; Tourassi, Georgia [ORNL

2015-01-01

Previously, we have shown the potential of using an individual s visual search pattern as a possible biometric. That study focused on viewing images displaying dot-patterns with different spatial relationships to determine which pattern can be more effective in establishing the identity of an individual. In this follow-up study we investigated the temporal stability of this biometric. We performed an experiment with 16 individuals asked to search for a predetermined feature of a random-dot pattern as we tracked their eye movements. Each participant completed four testing sessions consisting of two dot patterns repeated twice. One dot pattern displayed concentric circles shifted to the left or right side of the screen overlaid with visual noise, and participants were asked which side the circles were centered on. The second dot-pattern displayed a number of circles (between 0 and 4) scattered on the screen overlaid with visual noise, and participants were asked how many circles they could identify. Each session contained 5 untracked tutorial questions and 50 tracked test questions (200 total tracked questions per participant). To create each participant s "fingerprint", we constructed a Hidden Markov Model (HMM) from the gaze data representing the underlying visual search and cognitive process. The accuracy of the derived HMM models was evaluated using cross-validation for various time-dependent train-test conditions. Subject identification accuracy ranged from 17.6% to 41.8% for all conditions, which is significantly higher than random guessing (1/16 = 6.25%). The results suggest that visual search pattern is a promising, fairly stable personalized fingerprint of perceptual organization.

Independence of long-term contextual memory and short-term perceptual hypotheses: Evidence from contextual cueing of interrupted search.

Science.gov (United States)

Schlagbauer, Bernhard; Mink, Maurice; Müller, Hermann J; Geyer, Thomas

2017-02-01

Observers are able to resume an interrupted search trial faster relative to responding to a new, unseen display. This finding of rapid resumption is attributed to short-term perceptual hypotheses generated on the current look and confirmed upon subsequent looks at the same display. It has been suggested that the contents of perceptual hypotheses are similar to those of other forms of memory acquired long-term through repeated exposure to the same search displays over the course of several trials, that is, the memory supporting "contextual cueing." In three experiments, we investigated the relationship between short-term perceptual hypotheses and long-term contextual memory. The results indicated that long-term, contextual memory of repeated displays neither affected the generation nor the confirmation of short-term perceptual hypotheses for these displays. Furthermore, the analysis of eye movements suggests that long-term memory provides an initial benefit in guiding attention to the target, whereas in subsequent looks guidance is entirely based on short-term perceptual hypotheses. Overall, the results reveal a picture of both long- and short-term memory contributing to reliable performance gains in interrupted search, while exerting their effects in an independent manner.

Filter arrays

Science.gov (United States)

Page, Ralph H.; Doty, Patrick F.

2017-08-01

The various technologies presented herein relate to a tiled filter array that can be used in connection with performance of spatial sampling of optical signals. The filter array comprises filter tiles, wherein a first plurality of filter tiles are formed from a first material, the first material being configured such that only photons having wavelengths in a first wavelength band pass therethrough. A second plurality of filter tiles is formed from a second material, the second material being configured such that only photons having wavelengths in a second wavelength band pass therethrough. The first plurality of filter tiles and the second plurality of filter tiles can be interspersed to form the filter array comprising an alternating arrangement of first filter tiles and second filter tiles.

Single-electron tunnel junction array

International Nuclear Information System (INIS)

Likharev, K.K.; Bakhvalov, N.S.; Kazacha, G.S.; Serdyukova, S.I.

1989-01-01

The authors have carried out an analysis of statics and dynamics of uniform one-dimensional arrays of ultrasmall tunnel junctions. The correlated single-electron tunneling in the junctions of the array results in its behavior qualitatively similar to that of the Josephson transmission line. In particular, external electric fields applied to the array edges can inject single-electron-charged solitons into the array interior. Shape of such soliton and character of its interactions with other solitons and the array edges are very similar to those of the Josephson vortices (sine-Gordon solitons) in the Josephson transmission line. Under certain conditions, a coherent motion of the soliton train along the array is possible, resulting in generation of narrowband SET oscillations with frequency f/sub s/ = /e where is the dc current flowing along the array

Direction-of-Arrival Estimation for Coprime Array Using Compressive Sensing Based Array Interpolation

Directory of Open Access Journals (Sweden)

Aihua Liu

2017-01-01

Full Text Available A method of direction-of-arrival (DOA estimation using array interpolation is proposed in this paper to increase the number of resolvable sources and improve the DOA estimation performance for coprime array configuration with holes in its virtual array. The virtual symmetric nonuniform linear array (VSNLA of coprime array signal model is introduced, with the conventional MUSIC with spatial smoothing algorithm (SS-MUSIC applied on the continuous lags in the VSNLA; the degrees of freedom (DoFs for DOA estimation are obviously not fully exploited. To effectively utilize the extent of DoFs offered by the coarray configuration, a compressing sensing based array interpolation algorithm is proposed. The compressing sensing technique is used to obtain the coarse initial DOA estimation, and a modified iterative initial DOA estimation based interpolation algorithm (IMCA-AI is then utilized to obtain the final DOA estimation, which maps the sample covariance matrix of the VSNLA to the covariance matrix of a filled virtual symmetric uniform linear array (VSULA with the same aperture size. The proposed DOA estimation method can efficiently improve the DOA estimation performance. The numerical simulations are provided to demonstrate the effectiveness of the proposed method.

The Applicability of Incoherent Array Processing to IMS Seismic Array Stations

Science.gov (United States)

Gibbons, S. J.

2012-04-01

The seismic arrays of the International Monitoring System for the CTBT differ greatly in size and geometry, with apertures ranging from below 1 km to over 60 km. Large and medium aperture arrays with large inter-site spacings complicate the detection and estimation of high frequency phases since signals are often incoherent between sensors. Many such phases, typically from events at regional distances, remain undetected since pipeline algorithms often consider only frequencies low enough to allow coherent array processing. High frequency phases that are detected are frequently attributed qualitatively incorrect backazimuth and slowness estimates and are consequently not associated with the correct event hypotheses. This can lead to missed events both due to a lack of contributing phase detections and by corruption of event hypotheses by spurious detections. Continuous spectral estimation can be used for phase detection and parameter estimation on the largest aperture arrays, with phase arrivals identified as local maxima on beams of transformed spectrograms. The estimation procedure in effect measures group velocity rather than phase velocity and the ability to estimate backazimuth and slowness requires that the spatial extent of the array is large enough to resolve time-delays between envelopes with a period of approximately 4 or 5 seconds. The NOA, AKASG, YKA, WRA, and KURK arrays have apertures in excess of 20 km and spectrogram beamforming on these stations provides high quality slowness estimates for regional phases without additional post-processing. Seven arrays with aperture between 10 and 20 km (MJAR, ESDC, ILAR, KSRS, CMAR, ASAR, and EKA) can provide robust parameter estimates subject to a smoothing of the resulting slowness grids, most effectively achieved by convolving the measured slowness grids with the array response function for a 4 or 5 second period signal. The MJAR array in Japan recorded high SNR Pn signals for both the 2006 and 2009 North Korea

Genome wide analysis of acute myeloid leukemia reveal leukemia specific methylome and subtype specific hypomethylation of repeats.

Directory of Open Access Journals (Sweden)

Marwa H Saied

Full Text Available Methylated DNA immunoprecipitation followed by high-throughput sequencing (MeDIP-seq has the potential to identify changes in DNA methylation important in cancer development. In order to understand the role of epigenetic modulation in the development of acute myeloid leukemia (AML we have applied MeDIP-seq to the DNA of 12 AML patients and 4 normal bone marrows. This analysis revealed leukemia-associated differentially methylated regions that included gene promoters, gene bodies, CpG islands and CpG island shores. Two genes (SPHKAP and DPP6 with significantly methylated promoters were of interest and further analysis of their expression showed them to be repressed in AML. We also demonstrated considerable cytogenetic subtype specificity in the methylomes affecting different genomic features. Significantly distinct patterns of hypomethylation of certain interspersed repeat elements were associated with cytogenetic subtypes. The methylation patterns of members of the SINE family tightly clustered all leukemic patients with an enrichment of Alu repeats with a high CpG density (P<0.0001. We were able to demonstrate significant inverse correlation between intragenic interspersed repeat sequence methylation and gene expression with SINEs showing the strongest inverse correlation (R(2 = 0.7. We conclude that the alterations in DNA methylation that accompany the development of AML affect not only the promoters, but also the non-promoter genomic features, with significant demethylation of certain interspersed repeat DNA elements being associated with AML cytogenetic subtypes. MeDIP-seq data were validated using bisulfite pyrosequencing and the Infinium array.

Search for Long Period Solar Normal Modes in Ambient Seismic Noise

Science.gov (United States)

Caton, R.; Pavlis, G. L.

2016-12-01

We search for evidence of solar free oscillations (normal modes) in long period seismic data through multitaper spectral analysis of array stacks. This analysis is similar to that of Thomson & Vernon (2015), who used data from the most quiet single stations of the global seismic network. Our approach is to use stacks of large arrays of noisier stations to reduce noise. Arrays have the added advantage of permitting the use of nonparametic statistics (jackknife errors) to provide objective error estimates. We used data from the Transportable Array, the broadband borehole array at Pinyon Flat, and the 3D broadband array in Homestake Mine in Lead, SD. The Homestake Mine array has 15 STS-2 sensors deployed in the mine that are extremely quiet at long periods due to stable temperatures and stable piers anchored to hard rock. The length of time series used ranged from 50 days to 85 days. We processed the data by low-pass filtering with a corner frequency of 10 mHz, followed by an autoregressive prewhitening filter and median stack. We elected to use the median instead of the mean in order to get a more robust stack. We then used G. Prieto's mtspec library to compute multitaper spectrum estimates on the data. We produce delete-one jackknife error estimates of the uncertainty at each frequency by computing median stacks of all data with one station removed. The results from the TA data show tentative evidence for several lines between 290 μHz and 400 μHz, including a recurring line near 379 μHz. This 379 μHz line is near the Earth mode 0T2 and the solar mode 5g5, suggesting that 5g5 could be coupling into the Earth mode. Current results suggest more statistically significant lines may be present in Pinyon Flat data, but additional processing of the data is underway to confirm this observation.

UK 2009-2010 repeat station report

Directory of Open Access Journals (Sweden)

Thomas J.G. Shanahan

2013-03-01

Full Text Available The British Geological Survey is responsible for conducting the UK geomagnetic repeat station programme. Measurements made at the UK repeat station sites are used in conjunction with the three UK magnetic observatories: Hartland, Eskdalemuir and Lerwick, to produce a regional model of the local field each year. The UK network of repeat stations comprises 41 stations which are occupied at approximately 3-4 year intervals. Practices for conducting repeat station measurements continue to evolve as advances are made in survey instrumentation and as the usage of the data continues to change. Here, a summary of the 2009 and 2010 UK repeat station surveys is presented, highlighting the measurement process and techniques, density of network, reduction process and recent results.

The prevalence effect in lateral masking and its relevance for visual search.

Science.gov (United States)

Geelen, B P; Wertheim, A H

2015-04-01

In stimulus displays with or without a single target amid 1,644 identical distractors, target prevalence was varied between 20, 50 and 80 %. Maximum gaze deviation was measured to determine the strength of lateral masking in these arrays. The results show that lateral masking was strongest in the 20 % prevalence condition, which differed significantly from both the 50 and 80 % prevalence conditions. No difference was observed between the latter two. This pattern of results corresponds to that found in the literature on the prevalence effect in visual search (stronger lateral masking corresponding to longer search times). The data add to similar findings reported earlier (Wertheim et al. in Exp Brain Res, 170:387-402, 2006), according to which the effects of many well-known factors in visual search correspond to those on lateral masking. These were the effects of set size, disjunctions versus conjunctions, display area, distractor density, the asymmetry effect (Q vs. O's) and viewing distance. The present data, taken together with those earlier findings, may lend credit to a causal hypothesis that lateral masking could be a more important mechanism in visual search than usually assumed.

Action potential propagation recorded from single axonal arbors using multi-electrode arrays.

Science.gov (United States)

Tovar, Kenneth R; Bridges, Daniel C; Wu, Bian; Randall, Connor; Audouard, Morgane; Jang, Jiwon; Hansma, Paul K; Kosik, Kenneth S

2018-04-11

We report the presence of co-occurring extracellular action potentials (eAPs) from cultured mouse hippocampal neurons among groups of planar electrodes on multi-electrode arrays (MEAs). The invariant sequences of eAPs among co-active electrode groups, repeated co-occurrences and short inter-electrode latencies are consistent with action potential propagation in unmyelinated axons. Repeated eAP co-detection by multiple electrodes was widespread in all our data records. Co-detection of eAPs confirms they result from the same neuron and allows these eAPs to be isolated from all other spikes independently of spike sorting algorithms. We averaged co-occurring events and revealed additional electrodes with eAPs that would otherwise be below detection threshold. We used these eAP cohorts to explore the temperature sensitivity of action potential propagation and the relationship between voltage-gated sodium channel density and propagation velocity. The sequence of eAPs among co-active electrodes 'fingerprints' neurons giving rise to these events and identifies them within neuronal ensembles. We used this property and the non-invasive nature of extracellular recording to monitor changes in excitability at multiple points in single axonal arbors simultaneously over several hours, demonstrating independence of axonal segments. Over several weeks, we recorded changes in inter-electrode propagation latencies and ongoing changes in excitability in different regions of single axonal arbors. Our work illustrates how repeated eAP co-occurrences can be used to extract physiological data from single axons with low electrode density MEAs. However, repeated eAP co-occurrences leads to over-sampling spikes from single neurons and thus can confound traditional spike-train analysis.

TRDistiller: a rapid filter for enrichment of sequence datasets with proteins containing tandem repeats.

Science.gov (United States)

Richard, François D; Kajava, Andrey V

2014-06-01

The dramatic growth of sequencing data evokes an urgent need to improve bioinformatics tools for large-scale proteome analysis. Over the last two decades, the foremost efforts of computer scientists were devoted to proteins with aperiodic sequences having globular 3D structures. However, a large portion of proteins contain periodic sequences representing arrays of repeats that are directly adjacent to each other (so called tandem repeats or TRs). These proteins frequently fold into elongated fibrous structures carrying different fundamental functions. Algorithms specific to the analysis of these regions are urgently required since the conventional approaches developed for globular domains have had limited success when applied to the TR regions. The protein TRs are frequently not perfect, containing a number of mutations, and some of them cannot be easily identified. To detect such "hidden" repeats several algorithms have been developed. However, the most sensitive among them are time-consuming and, therefore, inappropriate for large scale proteome analysis. To speed up the TR detection we developed a rapid filter that is based on the comparison of composition and order of short strings in the adjacent sequence motifs. Tests show that our filter discards up to 22.5% of proteins which are known to be without TRs while keeping almost all (99.2%) TR-containing sequences. Thus, we are able to decrease the size of the initial sequence dataset enriching it with TR-containing proteins which allows a faster subsequent TR detection by other methods. The program is available upon request. Copyright © 2014 Elsevier Inc. All rights reserved.

Magnetic monopole searches with the MoEDAL experiment at the LHC

CERN Document Server

Pinfold, J; Lacarrère, D; Mermod, P; Katre, A

2014-01-01

The magnetic monopole appears in theories of spontaneous ga uge symmetry breaking and its existence would explain the quantisation of electric charg e. MoEDAL is the latest approved LHC experiment, designed to search directly for monopoles. It h as now taken data for the first time. The MoEDAL detectors are based on two complementary techniq ues: nuclear-track detectors are sensitive to the high-ionisation signature expected fr om a monopole, and the new magnetic monopole trapper (MMT) relies on the stopping and trapping o f monopoles inside an aluminium array which is then analysed with a superconducting magneto meter. Preliminary results obtained with a subset of the MoEDAL MMT test array deployed in 2012 are presented, where monopoles with charge above the fundamental unit magnetic charge or ma ss above 1.5 TeV are probed for the first time at the LHC

Reject/repeat analysis and the effect prior film viewing has on a department's reject/repeat rate

International Nuclear Information System (INIS)

Clark, P.A.; Hogg, P.

2003-01-01

Purpose: Achieving cost-effectiveness within the NHS is an old initiative but one that has again been highlighted by recent government policies (The New NHS-Modern and Dependable, Stationary Office, London, 1997). It has been reiterated that it is the responsibility of individual Trusts to devise means to provide such a service. Reject/repeat analyses have long been the primary tool used to assess the cost-effectiveness of radiography departments (Quality Assurance in Diagnostic Radiology, WHO, Geneva, 1982). This research paper examines an in-house initiative (viewing patients' previous films) commonly employed in other Health Trusts in order to reduce departmental repeat/reject rates. Method: Three hundred orthopaedic patients with hip, knee and ankle prostheses were included in a reject/repeat analysis. The aim was to investigate whether or not viewing patient's previous relevant radiographs would be advantageous to the practicing radiographer. This was done through an audit cycle consisting of two audit periods each lasting for 3 months. The primary audit period recorded the baseline repeat/reject rate, with the secondary audit period recording the repeat/reject rate under an experimental condition of viewing the relevant radiographs. Results: The baseline audit revealed repeat rates of 33% in orthopaedic patients with hip, knee and ankle prostheses. The availability of prior film viewing to the radiographer reduced this repeat rate to 10.6%. Conclusion: Prior film viewing dramatically reduced the department's repeat/reject rate by 22.4%. This provides scope for significant patient dose reductions as well as reducing departmental film expenses. This is an underestimated initiative and should be used appropriately in routine clinical practice

Fiber Laser Array

National Research Council Canada - National Science Library

Simpson, Thomas

2002-01-01

...., field-dependent, loss within the coupled laser array. During this program, Jaycor focused on the construction and use of an experimental apparatus that can be used to investigate the coherent combination of an array of fiber lasers...

Independence of long-term contextual memory and short-term perceptual hypotheses: evidence from contextual cueing of interrupted search

OpenAIRE

Schlagbauer, B.; Mink, M.; Muller, Hermann J.; Geyer, T.

2017-01-01

Observers are able to resume an interrupted search trial faster relative to responding to a new, unseen display. This finding of rapid resumption is attributed to short-term perceptual hypotheses generated on the current look and confirmed upon subsequent looks at the same display. It has been suggested that the contents of perceptual hypotheses are similar to those of other forms of memory acquired long-term through repeated exposure to the same search displays over the course of several tri...

EzArray: A web-based highly automated Affymetrix expression array data management and analysis system

Directory of Open Access Journals (Sweden)

Zhu Yuelin

2008-01-01

Full Text Available Abstract Background Though microarray experiments are very popular in life science research, managing and analyzing microarray data are still challenging tasks for many biologists. Most microarray programs require users to have sophisticated knowledge of mathematics, statistics and computer skills for usage. With accumulating microarray data deposited in public databases, easy-to-use programs to re-analyze previously published microarray data are in high demand. Results EzArray is a web-based Affymetrix expression array data management and analysis system for researchers who need to organize microarray data efficiently and get data analyzed instantly. EzArray organizes microarray data into projects that can be analyzed online with predefined or custom procedures. EzArray performs data preprocessing and detection of differentially expressed genes with statistical methods. All analysis procedures are optimized and highly automated so that even novice users with limited pre-knowledge of microarray data analysis can complete initial analysis quickly. Since all input files, analysis parameters, and executed scripts can be downloaded, EzArray provides maximum reproducibility for each analysis. In addition, EzArray integrates with Gene Expression Omnibus (GEO and allows instantaneous re-analysis of published array data. Conclusion EzArray is a novel Affymetrix expression array data analysis and sharing system. EzArray provides easy-to-use tools for re-analyzing published microarray data and will help both novice and experienced users perform initial analysis of their microarray data from the location of data storage. We believe EzArray will be a useful system for facilities with microarray services and laboratories with multiple members involved in microarray data analysis. EzArray is freely available from http://www.ezarray.com/.

COMMENTS ON THE SEARCH FOR ELECTROSTATIC DISCHARGES ON MARS

International Nuclear Information System (INIS)

Renno, Nilton O.; Ruf, Christopher S.

2012-01-01

Ruf et al. used the Deep Space Network (DSN) to search for the emission of non-thermal radiation by martian dust storms, theoretically predicted by Renno et al. They detected the emission of non-thermal radiation that they were searching for, but were surprised that it contained spectral peaks suggesting modulation at various frequencies and their harmonics. Ruf et al. hypothesized that the emission of non-thermal radiation was caused by electric discharges in a deep convective dust storm, modulated by Schumann resonances (SRs). Anderson et al. used the Allen Telescope Array (ATA) to search for similar emissions. They stated that they found only radio frequency interference (RFI) during their search for non-thermal emission by martian dust storms and implicitly suggested that the signal detected by Ruf et al. was also RFI. However, their search was not conducted during the dust storm season when deep convective storms are most likely to occur. Here, we show that the ubiquitous dust devils and small-scale dust storms that were instead likely present during their observations are too shallow to excite SRs and produce the signals detected by Ruf et al. We also show that the spectral and temporal behavior of the signals detected by Anderson et al. corroborates the idea that they originated from man-made pulse-modulated telecommunication signals rather than martian electric discharges. In contrast, an identical presentation of the signals detected by Ruf et al. demonstrates that they do not resemble man-made signals. The presentation indicates that the DSN signals were consistent with modulation by martian SRs, as originally hypothesized by Ruf et al. We propose that a more comprehensive search for electrostatic discharges be conducted with either the ATA or DSN during a future martian dust storm season to test the hypothesis proposed by Ruf et al.

Direction Finding for Bistatic MIMO Radar with Uniform Circular Array

Directory of Open Access Journals (Sweden)

Cao Yunhe

2013-01-01

Full Text Available A method of direction of arrival (DOA and direction of departure (DOD angle estimation based on polynomial rooting for bistatic multiple-input multiple-output (MIMO radar with uniform circular array (UCA configuration is proposed in this paper. The steering vector of the UCA is firstly transformed into a steering vector with a Vandermonde structure by using the Jacobi-Anger expansion. Then the null-spectrum function of the MIMO radar can be written as an expression in which the transmit and receive steering vectors are decoupled. Finally, a two-step polynomial rooting is used to estimate DOA and DOD of targets instead of two-dimensional multiple signal classification (MUSIC search method for bistatic UCA MIMO radar. The angle estimation performance of the proposed method is similar to that of the MUSIC spectral search method, but the computation burden of the proposed polynomial rooting algorithm is much lower than that of the conventional MUSIC method. The simulation results of the proposed algorithm are presented and the performances are investigated and analyzed.

Repeating Marx

DEFF Research Database (Denmark)

Fuchs, Christian; Monticelli, Lara

2018-01-01

This introduction sets out the context of the special issue “Karl Marx @ 200: Debating Capitalism & Perspectives for the Future of Radical Theory”, which was published on the occasion of Marx’s bicentenary on 5 May 2018. First, we give a brief overview of contemporary capitalism’s development...... and its crises. Second, we argue that it is important to repeat Marx today. Third, we reflect on lessons learned from 200 years of struggles for alternatives to capitalism. Fourth, we give an overview of the contributions in this special issue. Taken together, the contributions in this special issue show...... that Marx’s theory and politics remain key inspirations for understanding exploitation and domination in 21st-century society and for struggles that aim to overcome these phenomena and establishing a just and fair society. We need to repeat Marx today....

A systematic search for dwarf counterparts to ultra compact high velocity clouds

Science.gov (United States)

Bennet, Paul; Sand, David J.; Crnojevic, Denija; Strader, Jay

2015-01-01

Observations of the Universe on scales smaller than typical, massive galaxies challenge the standard Lambda Cold Dark Matter paradigm for structure formation. It is thus imperative to discover and characterize the faintest dwarf galaxy systems, not just within the Local Group, but in relatively isolated environments as well in order to properly connect them with models of structure formation. Here we report on a systematic search of public ultraviolet and optical archives for dwarf galaxy counterparts to so-called Ultra Compact High Velocity Clouds (UCHVCs), which are compact, isolated HI sources recently found in the Galactic Arecibo L-band Feed Array-HI (GALFA-HI) and Arecibo Legacy Fast ALFA (ALFALFA-HI) surveys. Our search has uncovered at least three strong dwarf galaxy candidates, and we present their inferred star formation rate and structural properties here.

Microbial Diagnostic Array Workstation (MDAW: a web server for diagnostic array data storage, sharing and analysis

Directory of Open Access Journals (Sweden)

Chang Yung-Fu

2008-09-01

Full Text Available Abstract Background Microarrays are becoming a very popular tool for microbial detection and diagnostics. Although these diagnostic arrays are much simpler when compared to the traditional transcriptome arrays, due to the high throughput nature of the arrays, the data analysis requirements still form a bottle neck for the widespread use of these diagnostic arrays. Hence we developed a new online data sharing and analysis environment customised for diagnostic arrays. Methods Microbial Diagnostic Array Workstation (MDAW is a database driven application designed in MS Access and front end designed in ASP.NET. Conclusion MDAW is a new resource that is customised for the data analysis requirements for microbial diagnostic arrays.

First results of neutrinoless double beta decay search with the GERmanium Detector Array "GERDA"

Science.gov (United States)

Janicskó Csáthy, József

2014-06-01

The study of neutrinoless double beta decay is the most powerful approach to the fundamental question if the neutrino is a Majorana particle, i.e. its own anti-particle. The observation of the lepton number violating neutrinoless double beta decay would establish the Majorana nature of the neutrino. Until now neutrinoless double beta decay was not observed. The GERmanium Detector Array, GERDA is a double beta decay experiment located at the INFN Gran Sasso National Laboratory, Italy. GERDA operates bare Ge diodes enriched in 76Ge in liquid argon supplemented by a water shield. The exposure accumulated adds up to 21.6 kg· yr with a background level of 1.8 · 10-2 cts/(keV·kg·yr). The results of the Phase I of the experiment are presented and the preparation of the Phase II is briefly discussed.

Earthdata Search: How Usability Drives Innovation To Enable A Broad User Base

Science.gov (United States)

Reese, M.; Siarto, J.; Lynnes, C.; Shum, D.

2017-12-01

Earthdata Search (https://search.earthdata.nasa.gov) is a modern web application allowing users to search, discover, visualize, refine, and access NASA Earth Observation data using a wide array of service offerings. Its goal is to ease the technical burden on data users by providing a high-quality application that makes it simple to interact with NASA Earth observation data, freeing them to spend more effort on innovative endeavors. This talk would detail how we put end users first in our design and development process, focusing on usability and letting usability needs drive requirements for the underlying technology. Just a few examples of how this plays out practically, Earthdata Search teams with a lightning fast metadata repository, allowing it to be an extremely responsive UI that updates as the user changes criteria not only at the dataset level, but also at the file level. This results in a better exploration experience as the time penalty is greatly reduced. Also, since Earthdata Search uses metadata from over 35,000 datasets that are managed by different data providers, metadata standards, quality and consistency will vary. We found that this was negatively impacting users' search and exploration experience. We have resolved this problem with the introduction of "humanizers", which is a community-driven process to both "smooth out" metadata values and provide non-jargonistic representations of some content within the Earthdata Search UI. This is helpful for both the experience data scientist and our users that are brand new to the discipline.

Semiconductor-based experiments for neutrinoless double beta decay search

International Nuclear Information System (INIS)

Barnabé Heider, Marik

2012-01-01

Three experiments are employing semiconductor detectors in the search for neutrinoless double beta (0νββ) decay: COBRA, Majorana and GERDA. COBRA is studying the prospects of using CdZnTe detectors in terms of achievable energy resolution and background suppression. These detectors contain several ββ emitters and the most promising for 0νββ-decay search is 116 Cd. Majorana and GERDA will use isotopically enriched high purity Ge detectors to search for 0νββ-decay of 76 Ge. Their aim is to achieve a background ⩽10 −3 counts/(kg⋅y⋅keV) at the Q improvement compared to the present state-of-art. Majorana will operate Ge detectors in electroformed-Cu vacuum cryostats. A first cryostat housing a natural-Ge detector array is currently under preparation. In contrast, GERDA is operating bare Ge detectors submerged in liquid argon. The construction of the GERDA experiment is completed and a commissioning run started in June 2010. A string of natural-Ge detectors is operated to test the complete experimental setup and to determine the background before submerging the detectors enriched in 76 Ge. An overview and a comparison of these three experiments will be presented together with the latest results and developments.

Analysis of repeated measures data

CERN Document Server

Islam, M Ataharul

2017-01-01

This book presents a broad range of statistical techniques to address emerging needs in the field of repeated measures. It also provides a comprehensive overview of extensions of generalized linear models for the bivariate exponential family of distributions, which represent a new development in analysing repeated measures data. The demand for statistical models for correlated outcomes has grown rapidly recently, mainly due to presence of two types of underlying associations: associations between outcomes, and associations between explanatory variables and outcomes. The book systematically addresses key problems arising in the modelling of repeated measures data, bearing in mind those factors that play a major role in estimating the underlying relationships between covariates and outcome variables for correlated outcome data. In addition, it presents new approaches to addressing current challenges in the field of repeated measures and models based on conditional and joint probabilities. Markov models of first...

Association of clustered regularly interspaced short palindromic repeat (CRISPR) elements with specific serotypes and virulence potential of shiga toxin-producing Escherichia coli.

Science.gov (United States)

Toro, Magaly; Cao, Guojie; Ju, Wenting; Allard, Marc; Barrangou, Rodolphe; Zhao, Shaohua; Brown, Eric; Meng, Jianghong

2014-02-01

Shiga toxin-producing Escherichia coli (STEC) strains (n = 194) representing 43 serotypes and E. coli K-12 were examined for clustered regularly interspaced short palindromic repeat (CRISPR) arrays to study genetic relatedness among STEC serotypes. A subset of the strains (n = 81) was further analyzed for subtype I-E cas and virulence genes to determine a possible association of CRISPR elements with potential virulence. Four types of CRISPR arrays were identified. CRISPR1 and CRISPR2 were present in all strains tested; 1 strain also had both CRISPR3 and CRISPR4, whereas 193 strains displayed a short, combined array, CRISPR3-4. A total of 3,353 spacers were identified, representing 528 distinct spacers. The average length of a spacer was 32 bp. Approximately one-half of the spacers (54%) were unique and found mostly in strains of less common serotypes. Overall, CRISPR spacer contents correlated well with STEC serotypes, and identical arrays were shared between strains with the same H type (O26:H11, O103:H11, and O111:H11). There was no association identified between the presence of subtype I-E cas and virulence genes, but the total number of spacers had a negative correlation with potential pathogenicity (P CRISPR-cas system and potential virulence needs to be determined on a broader scale, and the biological link will need to be established.

Rectenna array measurement results

Science.gov (United States)

Dickinson, R. M.

1980-01-01

The measured performance characteristics of a rectenna array are reviewed and compared to the performance of a single element. It is shown that the performance may be extrapolated from the individual element to that of the collection of elements. Techniques for current and voltage combining were demonstrated. The array performance as a function of various operating parameters is characterized and techniques for overvoltage protection and automatic fault clearing in the array demonstrated. A method for detecting failed elements also exists. Instrumentation for deriving performance effectiveness is described. Measured harmonic radiation patterns and fundamental frequency scattered patterns for a low level illumination rectenna array are presented.

Arrayed waveguide Sagnac interferometer.

Science.gov (United States)

Capmany, José; Muñoz, Pascual; Sales, Salvador; Pastor, Daniel; Ortega, Beatriz; Martinez, Alfonso

2003-02-01

We present a novel device, an arrayed waveguide Sagnac interferometer, that combines the flexibility of arrayed waveguides and the wide application range of fiber or integrated optics Sagnac loops. We form the device by closing an array of wavelength-selective light paths provided by two arrayed waveguides with a single 2 x 2 coupler in a Sagnac configuration. The equations that describe the device's operation in general conditions are derived. A preliminary experimental demonstration is provided of a fiber prototype in passive operation that shows good agreement with the expected theoretical performance. Potential applications of the device in nonlinear operation are outlined and discussed.

Carbon Nanotube Arrays for Intracellular Delivery and Biological Applications

Science.gov (United States)

Golshadi, Masoud

Introducing nucleic acids into mammalian cells is a crucial step to elucidate biochemical pathways, modify gene expression in immortalized cells, primary cells, and stem cells, and intoduces new approaches for clinical diagnostics and therapeutics. Current gene transfer technologies, including lipofection, electroporation, and viral delivery, have enabled break-through advances in basic and translational science to enable derivation and programming of embryonic stem cells, advanced gene editing using CRISPR (Clustered regularly interspaced short palindromic repeats), and development of targeted anti-tumor therapy using chimeric antigen receptors in T-cells (CAR-T). Despite these successes, current transfection technologies are time consuming and limited by the inefficient introduction of test molecules into large populations of target cells, and the cytotoxicity of the techniques. Moreover, many cell types cannot be consistently transfected by lipofection or electroporation (stem cells, T-cells) and viral delivery has limitations to the size of experimental DNA that can be packaged. In this dissertation, a novel coverslip-like platform consisting of an array of aligned hollow carbon nanotubes (CNTs) embedded in a sacrificial template is developed that enhances gene transfer capabilities, including high efficiency, low toxicity, in an expanded range of target cells, with the potential to transfer mixed combinations of protein and nucleic acids. The CNT array devices are fabricated by a scalable template-based manufacturing method using commercially available membranes, eliminating the need for nano-assembly. High efficient transfection has been demonstrated by delivering various cargos (nanoparticles, dye and plasmid DNA) into populations of cells, achieving 85% efficiency of plasmid DNA delivery into immortalized cells. Moreover, the CNT-mediated transfection of stem cells shows 3 times higher efficiency compared to current lipofection methods. Evaluating the cell

Operation and performance of the EEE network array for the detection of cosmic rays

Energy Technology Data Exchange (ETDEWEB)

Abbrescia, M. [Museo Storico della Fisica e Centro Studi e Ricerche “E. Fermi”, Roma (Italy); INFN and Dipartimento di Fisica, Università di Bari, Bari (Italy); Avanzini, C.; Baldini, L. [Museo Storico della Fisica e Centro Studi e Ricerche “E. Fermi”, Roma (Italy); INFN and Dipartimento di Fisica, Università di Pisa, Pisa (Italy); Baldini Ferroli, R. [Museo Storico della Fisica e Centro Studi e Ricerche “E. Fermi”, Roma (Italy); INFN Laboratori Nazionali di Frascati, Frascati (RM) (Italy); Batignani, G. [Museo Storico della Fisica e Centro Studi e Ricerche “E. Fermi”, Roma (Italy); INFN and Dipartimento di Fisica, Università di Pisa, Pisa (Italy); Bencivenni, G. [INFN Laboratori Nazionali di Frascati, Frascati (RM) (Italy); Bossini, E. [Museo Storico della Fisica e Centro Studi e Ricerche “E. Fermi”, Roma (Italy); INFN Gruppo Collegato di Siena and Dipartimento di Fisica, Università di Siena, Siena (Italy); Chiavassa, A. [INFN and Dipartimento di Fisica, Università di Torino, Torino (Italy); Cicalò, C. [Museo Storico della Fisica e Centro Studi e Ricerche “E. Fermi”, Roma (Italy); INFN and Dipartimento di Fisica, Università di Cagliari, Cagliari (Italy); Cifarelli, L. [Museo Storico della Fisica e Centro Studi e Ricerche “E. Fermi”, Roma (Italy); INFN and Dipartimento di Fisica e Astronomia, Università di Bologna, Bologna (Italy); and others

2017-02-11

The EEE (Extreme Energy Events) Project is an experiment for the detection of cosmic ray muons by means of a sparse array of telescopes, each made of three Multigap Resistive Plate Chambers (MRPC), distributed over all the Italian territory and at CERN. The main scientific goals of the Project are the investigation of the properties of the local muon flux, the detection of Extensive Air Showers (EAS) and the search for long-distance correlations between far telescopes. The Project is also characterized by a strong educational and outreach aspect since the telescopes are managed by teams of students and teachers who had previously constructed them at CERN. In this paper an overall description of the experiment is given, including the design, construction and performance of the telescopes. The operation of the whole array, which currently consists of more than 50 telescopes, is also presented by showing the most recent physics results.

Operation and performance of the EEE network array for the detection of cosmic rays

International Nuclear Information System (INIS)

Abbrescia, M.; Avanzini, C.; Baldini, L.; Baldini Ferroli, R.; Batignani, G.; Bencivenni, G.; Bossini, E.; Chiavassa, A.; Cicalò, C.; Cifarelli, L.

2017-01-01

The EEE (Extreme Energy Events) Project is an experiment for the detection of cosmic ray muons by means of a sparse array of telescopes, each made of three Multigap Resistive Plate Chambers (MRPC), distributed over all the Italian territory and at CERN. The main scientific goals of the Project are the investigation of the properties of the local muon flux, the detection of Extensive Air Showers (EAS) and the search for long-distance correlations between far telescopes. The Project is also characterized by a strong educational and outreach aspect since the telescopes are managed by teams of students and teachers who had previously constructed them at CERN. In this paper an overall description of the experiment is given, including the design, construction and performance of the telescopes. The operation of the whole array, which currently consists of more than 50 telescopes, is also presented by showing the most recent physics results.

SEARCH FOR GRAVITATIONAL WAVE BURSTS FROM SIX MAGNETARS

International Nuclear Information System (INIS)

Abadie, J.; Abbott, B. P.; Abbott, R.; Adhikari, R.; Anderson, S. B.; Arai, K.; Araya, M. C.; Abernathy, M.; Accadia, T.; Acernese, F.; Adams, C.; Affeldt, C.; Allen, B.; Allen, G. S.; Amador Ceron, E.; Anderson, W. G.; Amariutei, D.; Arain, M. A.; Amin, R. S.; Antonucci, F.

2011-01-01

Soft gamma repeaters (SGRs) and anomalous X-ray pulsars (AXPs) are thought to be magnetars: neutron stars powered by extreme magnetic fields. These rare objects are characterized by repeated and sometimes spectacular gamma-ray bursts. The burst mechanism might involve crustal fractures and excitation of non-radial modes which would emit gravitational waves (GWs). We present the results of a search for GW bursts from six galactic magnetars that is sensitive to neutron star f-modes, thought to be the most efficient GW emitting oscillatory modes in compact stars. One of them, SGR 0501+4516, is likely ∼1 kpc from Earth, an order of magnitude closer than magnetars targeted in previous GW searches. A second, AXP 1E 1547.0-5408, gave a burst with an estimated isotropic energy >10 44 erg which is comparable to the giant flares. We find no evidence of GWs associated with a sample of 1279 electromagnetic triggers from six magnetars occurring between 2006 November and 2009 June, in GW data from the LIGO, Virgo, and GEO600 detectors. Our lowest model-dependent GW emission energy upper limits for band- and time-limited white noise bursts in the detector sensitive band, and for f-mode ringdowns (at 1090 Hz), are 3.0 x 10 44 d 2 1 erg and 1.4 x 10 47 d 2 1 erg, respectively, where d 1 = (d 0501 )/1 kpc and d 0501 is the distance to SGR 0501+4516. These limits on GW emission from f-modes are an order of magnitude lower than any previous, and approach the range of electromagnetic energies seen in SGR giant flares for the first time.

Rare, but obviously there: effects of target frequency and salience on visual search accuracy.

Science.gov (United States)

Biggs, Adam T; Adamo, Stephen H; Mitroff, Stephen R

2014-10-01

Accuracy can be extremely important for many visual search tasks. However, numerous factors work to undermine successful search. Several negative influences on search have been well studied, yet one potentially influential factor has gone almost entirely unexplored-namely, how is search performance affected by the likelihood that a specific target might appear? A recent study demonstrated that when specific targets appear infrequently (i.e., once in every thousand trials) they were, on average, not often found. Even so, some infrequently appearing targets were actually found quite often, suggesting that the targets' frequency is not the only factor at play. Here, we investigated whether salience (i.e., the extent to which an item stands out during search) could explain why some infrequent targets are easily found whereas others are almost never found. Using the mobile application Airport Scanner, we assessed how individual target frequency and salience interacted in a visual search task that included a wide array of targets and millions of trials. Target frequency and salience were both significant predictors of search accuracy, although target frequency explained more of the accuracy variance. Further, when examining only the rarest target items (those that appeared on less than 0.15% of all trials), there was a significant relationship between salience and accuracy such that less salient items were less likely to be found. Beyond implications for search theory, these data suggest significant vulnerability for real-world searches that involve targets that are both infrequent and hard-to-spot. Copyright © 2014 Elsevier B.V. All rights reserved.

Searches for squarks and gluinos with ATLAS

CERN Document Server

Jones, Samuel David; The ATLAS collaboration

2018-01-01

Despite the absence of experimental evidence, weak scale supersymmetry remains one of the best motivated and studied Standard Model extensions. From strongly produced initial states, SUSY phenomenology offers a rich array of observable signatures. Several supersymmetric models predict massive long-lived supersymmetric particles that may be detected through abnormal specific energy loss, appearing or disappearing tracks, displaced vertices, long time-of-flight or late calorimetric energy deposits. In addition to summarizing recent ATLAS search results on the production of squarks and gluinos in scenarios with such non-prompt particle decays, this talk will also address less conventional scenarios with tau leptons or same-flavour lepton pairs in the final state, with discussion in the context of GMSB models as well as traditional simplified models.

A Search for bursts of TeV gamma rays with Milagro

Science.gov (United States)

Smith, A. J.; MILAGRO Collaboration

2001-08-01

The Very High Energy (VHE, E > 100 GeV) component of Gamma-Ray Bursts (GRBs) remains unmeasured, despite the fact that models predict that the spectrum of GRBs extends beyond 1 TeV. Satellite detectors capable of observing GRBs lack the sensitivity to detect γ-rays with energies greater than ≈ 30 GeV due to their small effective area. Air ˇCerenkov telescopes, capable of detecting TeV point sources with excellent sensitivity have limited sensitivity to GRBs due to their small fields of view and limited duty cycles. The detection of TeV emission from GRBs is further complicated by the attenuation of VHE photons by interaction with the intergalactic infrared radiation. This process limits the horizon for TeV observations of GRBs to z pond (4800 m2 ) instrumented with an array of photo-multiplier tubes. Milagro operates 24 hours a day and continuously observes the entire overhead sky (≈2 sr). Because of its wide field of view and high duty cycle Milagro is uniquely capable of searching for TeV emission from GRBs. An efficient algorithm has been developed to search the Milagro data for GRBs with durations from 250 microseconds to 40s. The search, while designed to search for the TeV component of GRBs, may also be sensitive to the evaporation of primordial black holes, or some other yet undiscovered phenomenon. The results of this search are presented.

A New Normalizing Algorithm for BAC CGH Arrays with Quality Control Metrics

Directory of Open Access Journals (Sweden)

Jeffrey C. Miecznikowski

2011-01-01

Full Text Available The main focus in pin-tip (or print-tip microarray analysis is determining which probes, genes, or oligonucleotides are differentially expressed. Specifically in array comparative genomic hybridization (aCGH experiments, researchers search for chromosomal imbalances in the genome. To model this data, scientists apply statistical methods to the structure of the experiment and assume that the data consist of the signal plus random noise. In this paper we propose “SmoothArray”, a new method to preprocess comparative genomic hybridization (CGH bacterial artificial chromosome (BAC arrays and we show the effects on a cancer dataset. As part of our R software package “aCGHplus,” this freely available algorithm removes the variation due to the intensity effects, pin/print-tip, the spatial location on the microarray chip, and the relative location from the well plate. removal of this variation improves the downstream analysis and subsequent inferences made on the data. Further, we present measures to evaluate the quality of the dataset according to the arrayer pins, 384-well plates, plate rows, and plate columns. We compare our method against competing methods using several metrics to measure the biological signal. With this novel normalization algorithm and quality control measures, the user can improve their inferences on datasets and pinpoint problems that may arise in their BAC aCGH technology.

Integrated Array/Metadata Analytics

Science.gov (United States)

Misev, Dimitar; Baumann, Peter

2015-04-01

Data comes in various forms and types, and integration usually presents a problem that is often simply ignored and solved with ad-hoc solutions. Multidimensional arrays are an ubiquitous data type, that we find at the core of virtually all science and engineering domains, as sensor, model, image, statistics data. Naturally, arrays are richly described by and intertwined with additional metadata (alphanumeric relational data, XML, JSON, etc). Database systems, however, a fundamental building block of what we call "Big Data", lack adequate support for modelling and expressing these array data/metadata relationships. Array analytics is hence quite primitive or non-existent at all in modern relational DBMS. Recognizing this, we extended SQL with a new SQL/MDA part seamlessly integrating multidimensional array analytics into the standard database query language. We demonstrate the benefits of SQL/MDA with real-world examples executed in ASQLDB, an open-source mediator system based on HSQLDB and rasdaman, that already implements SQL/MDA.

High-power, ultralow-mass solar arrays: FY-77 solar arrays technology readiness assessment report, volume 2

Science.gov (United States)

Costogue, E. N.; Young, L. E.; Brandhorst, H. W., Jr.

1978-01-01

Development efforts are reported in detail for: (1) a lightweight solar array system for solar electric propulsion; (2) a high efficiency thin silicon solar cell; (3) conceptual design of 200 W/kg solar arrays; (4) fluorocarbon encapsulation for silicon solar cell array; and (5) technology assessment of concentrator solar arrays.

Tabu Search-based Synthesis of Digital Microfluidic Biochips with Dynamically Reconfigurable Non-rectangular Devices

DEFF Research Database (Denmark)

Maftei, Elena; Pop, Paul; Madsen, Jan

2010-01-01

they are highly reconfigurable and scalable. A digital biochip is composed of a two-dimensional array of cells, together with reservoirs for storing the samples and reagents. Several adjacent cells are dynamically grouped to form a virtual device, on which operations are performed. So far, researchers have...... assumed that throughout its execution, an operation is performed on a rectangular virtual device, whose position remains fixed. However, during the execution of an operation, the virtual device can be reconfigured to occupy a different group of cells on the array, forming any shape, not necessarily...... rectangular. In this paper, we present a Tabu Search metaheuristic for the synthesis of digital microfluidic biochips, which, starting from a biochemical application and a given biochip architecture, determines the allocation, resource binding, scheduling and placement of the operations in the application...

Wire Array Photovoltaics

Science.gov (United States)

Turner-Evans, Dan

Over the past five years, the cost of solar panels has dropped drastically and, in concert, the number of installed modules has risen exponentially. However, solar electricity is still more than twice as expensive as electricity from a natural gas plant. Fortunately, wire array solar cells have emerged as a promising technology for further lowering the cost of solar. Si wire array solar cells are formed with a unique, low cost growth method and use 100 times less material than conventional Si cells. The wires can be embedded in a transparent, flexible polymer to create a free-standing array that can be rolled up for easy installation in a variety of form factors. Furthermore, by incorporating multijunctions into the wire morphology, higher efficiencies can be achieved while taking advantage of the unique defect relaxation pathways afforded by the 3D wire geometry. The work in this thesis shepherded Si wires from undoped arrays to flexible, functional large area devices and laid the groundwork for multijunction wire array cells. Fabrication techniques were developed to turn intrinsic Si wires into full p-n junctions and the wires were passivated with a-Si:H and a-SiNx:H. Single wire devices yielded open circuit voltages of 600 mV and efficiencies of 9%. The arrays were then embedded in a polymer and contacted with a transparent, flexible, Ni nanoparticle and Ag nanowire top contact. The contact connected >99% of the wires in parallel and yielded flexible, substrate free solar cells featuring hundreds of thousands of wires. Building on the success of the Si wire arrays, GaP was epitaxially grown on the material to create heterostructures for photoelectrochemistry. These cells were limited by low absorption in the GaP due to its indirect bandgap, and poor current collection due to a diffusion length of only 80 nm. However, GaAsP on SiGe offers a superior combination of materials, and wire architectures based on these semiconductors were investigated for multijunction

Optimal shortening of uniform covering arrays.

Directory of Open Access Journals (Sweden)

Jose Torres-Jimenez

Full Text Available Software test suites based on the concept of interaction testing are very useful for testing software components in an economical way. Test suites of this kind may be created using mathematical objects called covering arrays. A covering array, denoted by CA(N; t, k, v, is an N × k array over [Formula: see text] with the property that every N × t sub-array covers all t-tuples of [Formula: see text] at least once. Covering arrays can be used to test systems in which failures occur as a result of interactions among components or subsystems. They are often used in areas such as hardware Trojan detection, software testing, and network design. Because system testing is expensive, it is critical to reduce the amount of testing required. This paper addresses the Optimal Shortening of Covering ARrays (OSCAR problem, an optimization problem whose objective is to construct, from an existing covering array matrix of uniform level, an array with dimensions of (N - δ × (k - Δ such that the number of missing t-tuples is minimized. Two applications of the OSCAR problem are (a to produce smaller covering arrays from larger ones and (b to obtain quasi-covering arrays (covering arrays in which the number of missing t-tuples is small to be used as input to a meta-heuristic algorithm that produces covering arrays. In addition, it is proven that the OSCAR problem is NP-complete, and twelve different algorithms are proposed to solve it. An experiment was performed on 62 problem instances, and the results demonstrate the effectiveness of solving the OSCAR problem to facilitate the construction of new covering arrays.

An Elite Decision Making Harmony Search Algorithm for Optimization Problem

Directory of Open Access Journals (Sweden)

Lipu Zhang

2012-01-01

Full Text Available This paper describes a new variant of harmony search algorithm which is inspired by a well-known item “elite decision making.” In the new algorithm, the good information captured in the current global best and the second best solutions can be well utilized to generate new solutions, following some probability rule. The generated new solution vector replaces the worst solution in the solution set, only if its fitness is better than that of the worst solution. The generating and updating steps and repeated until the near-optimal solution vector is obtained. Extensive computational comparisons are carried out by employing various standard benchmark optimization problems, including continuous design variables and integer variables minimization problems from the literature. The computational results show that the proposed new algorithm is competitive in finding solutions with the state-of-the-art harmony search variants.

Investigative change detection: identifying new topics using lexicon-based search

Science.gov (United States)

Hintz, Kenneth J.

2002-08-01

In law enforcement there is much textual data which needs to be searched in order to detect new threats. A new methodology which can be applied to this need is the automatic searching of the contents of documents from known sources to construct a lexicon of words used by that source. When analyzing future documents, the occurrence of words which have not been lexiconized are indicative of the introduction of a new topic into the source's lexicon which should be examined in its context by an analyst. A system analogous to this has been built and used to detect Fads and Categories on web sites. Fad refers to the first appearance of a word not in the lexicon; Category refers to the repeated appearance of a Fad word and the exceeding of some frequency or spatial occurrence metric indicating a permanence to the Category.

A review of the design and clinical evaluation of the ShefStim array-based functional electrical stimulation system.

Science.gov (United States)

Kenney, Laurence P; Heller, Ben W; Barker, Anthony T; Reeves, Mark L; Healey, Jamie; Good, Timothy R; Cooper, Glen; Sha, Ning; Prenton, Sarah; Liu, Anmin; Howard, David

2016-11-01

Functional electrical stimulation has been shown to be a safe and effective means of correcting foot drop of central neurological origin. Current surface-based devices typically consist of a single channel stimulator, a sensor for determining gait phase and a cuff, within which is housed the anode and cathode. The cuff-mounted electrode design reduces the likelihood of large errors in electrode placement, but the user is still fully responsible for selecting the correct stimulation level each time the system is donned. Researchers have investigated different approaches to automating aspects of setup and/or use, including recent promising work based on iterative learning techniques. This paper reports on the design and clinical evaluation of an electrode array-based FES system for the correction of drop foot, ShefStim. The paper reviews the design process from proof of concept lab-based study, through modelling of the array geometry and interface layer to array search algorithm development. Finally, the paper summarises two clinical studies involving patients with drop foot. The results suggest that the ShefStim system with automated setup produces results which are comparable with clinician setup of conventional systems. Further, the final study demonstrated that patients can use the system without clinical supervision. When used unsupervised, setup time was 14min (9min for automated search plus 5min for donning the equipment), although this figure could be reduced significantly with relatively minor changes to the design. Copyright © 2016 IPEM. Published by Elsevier Ltd. All rights reserved.

Carbon nanotube array actuators

International Nuclear Information System (INIS)

Geier, S; Mahrholz, T; Wierach, P; Sinapius, M

2013-01-01

Experimental investigations of highly vertically aligned carbon nanotubes (CNTs), also known as CNT-arrays, are the main focus of this paper. The free strain as result of an active material behavior is analyzed via a novel experimental setup. Previous test experiences of papers made of randomly oriented CNTs, also called Bucky-papers, reveal comparably low free strain. The anisotropy of aligned CNTs promises better performance. Via synthesis techniques like chemical vapor deposition (CVD) or plasma enhanced CVD (PECVD), highly aligned arrays of multi-walled carbon nanotubes (MWCNTs) are synthesized. Two different types of CNT-arrays are analyzed, morphologically first, and optically tested for their active characteristics afterwards. One type of the analyzed arrays features tube lengths of 750–2000 μm with a large variety of diameters between 20 and 50 nm and a wave-like CNT-shape. The second type features a maximum, almost uniform, length of 12 μm and a constant diameter of 50 nm. Different CNT-lengths and array types are tested due to their active behavior. As result of the presented tests, it is reported that the quality of orientation is the most decisive property for excellent active behavior. Due to their alignment, CNT-arrays feature the opportunity to clarify the actuation mechanism of architectures made of CNTs. (paper)

Rare Particle Searches with the high altitude SLIM experiment

CERN Document Server

Balestra, S; Fabbri, F; Giacomelli, G; Giacomelli, R; Giorgini, M; Kumar, A; Manzoor, S; McDonald, J; Margiotta, A; Medinaceli, E; Nogales, J; Patrizii, L; Popa, V; Quereshi, I; Saavedra, O; Sher, G; Shahzad, M; Spurio, M; Ticona, R; Togo, V; Velarde, A; Zanini, A

2005-01-01

The search for rare particles in the cosmic radiation remains one of the main aims of non-accelerator particle astrophysics. Experiments at high altitude allow lower mass thresholds with respect to detectors at sea level or underground. The SLIM experiment is a large array of nuclear track detectors located at the Chacaltaya High Altitude Laboratory (5290 m a.s.l.). The preliminary results from the analysis of a part of the first 236 sq.m exposed for more than 3.6 y are here reported. The detector is sensitive to Intermediate Mass Magnetic Monopoles and to SQM nuggets and Q-balls, which are possible Dark Matter candidates.

Search for UHE emission from 4U0115+63

International Nuclear Information System (INIS)

Alexandreas, D.E.; Allen, R.C.; Biller, S.D.; Dion, G.M.; Lu, X-Q.; Vishwanath, P.R.; Yodh, G.B.; Berley, D.; Chang, C.Y.; Dingus, B.L.; Dion, C.; Goodman, J.A.; Gupta, S.K.; Haines, T.J.; Kwok, P.W.; Stark, M.J.; Burman, R.L.; Hoffman, C.M.; Lloyd-Evans, J.; Nagle, D.E.; Potter, M.E.; Sandberg, V.D.; Zhang, W.P.; Cady, D.R.; Ellsworth, R.W.; Krakauer, D.A.; Talaga, R.L.

1990-01-01

We report here the preliminary results of our observations of the sporadic x-ray binary system 4U0115 + 63. The CYGNUS air shower array has been collecting data since April 1986. No significant excess is seen from the direction of this source, nor any correlation with its 24-day orbital period. A 90% confidence-level upper limit on the flux from 4U0115 + 63 is 2.8 x 10 -13 cm -2 s -1 above 50 TeV. This flux limit is considerably lower than those reported by other UHE experiments. Search for periodicity at the neutron star frequency is in progress. 12 refs., 3 figs., 1 tab

simple sequence repeats (EST-SSR)

African Journals Online (AJOL)

Yomi

2012-01-19

Jan 19, 2012 ... 212 primer pairs selected, based on repeat patterns of n≥8 for di-, tri-, tetra- and penta-nucleotide repeat ... Cluster analysis revealed a high genetic similarity among the sugarcane (Saccharum spp.) breeding lines which could reduce the genetic gain in ..... The multiple allele characteristic of SSR com-.

Nifty Nines and Repeating Decimals

Science.gov (United States)

Brown, Scott A.

2016-01-01

The traditional technique for converting repeating decimals to common fractions can be found in nearly every algebra textbook that has been published, as well as in many precalculus texts. However, students generally encounter repeating decimal numerals earlier than high school when they study rational numbers in prealgebra classes. Therefore, how…

Repeated Prescribed Burning in Aspen

Science.gov (United States)

Donald A. Perala

1974-01-01

Infrequent burning weather, low flammability of the aspen-hardwood association, and prolific sprouting and seeding of shrubs and hardwoods made repeated dormant season burning a poor tool to convert good site aspen to conifers. Repeat fall burns for wildlife habitat maintenance is workable if species composition changes are not important.

Radar techniques using array antennas

CERN Document Server

Wirth, Wulf-Dieter

2013-01-01

Radar Techniques Using Array Antennas is a thorough introduction to the possibilities of radar technology based on electronic steerable and active array antennas. Topics covered include array signal processing, array calibration, adaptive digital beamforming, adaptive monopulse, superresolution, pulse compression, sequential detection, target detection with long pulse series, space-time adaptive processing (STAP), moving target detection using synthetic aperture radar (SAR), target imaging, energy management and system parameter relations. The discussed methods are confirmed by simulation stud

The Search Performance Evaluation and Prediction in Exploratory Search

OpenAIRE

LIU, FEI

2016-01-01

The exploratory search for complex search tasks requires an effective search behavior model to evaluate and predict user search performance. Few studies have investigated the relationship between user search behavior and search performance in exploratory search. This research adopts a mixed approach combining search system development, user search experiment, search query log analysis, and multivariate regression analysis to resolve the knowledge gap. Through this study, it is shown that expl...

Scalable Parallel Distributed Coprocessor System for Graph Searching Problems with Massive Data

Directory of Open Access Journals (Sweden)

Wanrong Huang

2017-01-01

Full Text Available The Internet applications, such as network searching, electronic commerce, and modern medical applications, produce and process massive data. Considerable data parallelism exists in computation processes of data-intensive applications. A traversal algorithm, breadth-first search (BFS, is fundamental in many graph processing applications and metrics when a graph grows in scale. A variety of scientific programming methods have been proposed for accelerating and parallelizing BFS because of the poor temporal and spatial locality caused by inherent irregular memory access patterns. However, new parallel hardware could provide better improvement for scientific methods. To address small-world graph problems, we propose a scalable and novel field-programmable gate array-based heterogeneous multicore system for scientific programming. The core is multithread for streaming processing. And the communication network InfiniBand is adopted for scalability. We design a binary search algorithm to address mapping to unify all processor addresses. Within the limits permitted by the Graph500 test bench after 1D parallel hybrid BFS algorithm testing, our 8-core and 8-thread-per-core system achieved superior performance and efficiency compared with the prior work under the same degree of parallelism. Our system is efficient not as a special acceleration unit but as a processor platform that deals with graph searching applications.

Constraints on low-mass WIMPs from the EDELWEISS-III dark matter search

Energy Technology Data Exchange (ETDEWEB)

Armengaud, E.; De Boissière, T. [CEA Saclay, DSM/IRFU, Gif-sur-Yvette Cedex, 91191 France (France); Arnaud, Q.; Augier, C.; Benoît, A.; Billard, J.; Cazes, A.; Charlieux, F. [Institut de Physique Nucléaire de Lyon-UCBL, IN2P3-CNRS, 4 rue Enrico Fermi, Villeurbanne Cedex, 69622 France (France); Benoît, A.; Bres, G.; Camus, P. [Institut Néel, CNRS/UJF, 25 rue des Martyrs, BP 166, Grenoble, 38042 France (France); Bergé, L.; Broniatowski, A.; Chapellier, M.; Dumoulin, L. [CSNSM, Université Paris-Sud, CNRS/IN2P3, Université Paris-Saclay, Orsay, 91405 France (France); Bergmann, T. [Karlsruher Institut für Technologie, Institut für Prozessdatenverarbeitung und Elektronik, Postfach 3640, Karlsruhe, 76021 Germany (Germany); Blümer, J. [Karlsruher Institut für Technologie, Institut für Experimentelle Kernphysik, Gaedestr. 1, Karlsruhe, 76128 Germany (Germany); Brudanin, V.; Filosofov, D. [JINR, Laboratory of Nuclear Problems, Joliot-Curie 6, Dubna, Moscow Region, 141980 Russian Federation (Russian Federation); Eitel, K., E-mail: eric.armengaud@cea.fr [Karlsruher Institut für Technologie, Institut für Kernphysik, Postfach 3640, Karlsruhe, 76021 Germany (Germany); and others

2016-05-01

We present the results of a search for elastic scattering from galactic dark matter in the form of Weakly Interacting Massive Particles (WIMPs) in the 4–30 GeV/ c {sup 2} mass range. We make use of a 582 kg-day fiducial exposure from an array of 800 g Germanium bolometers equipped with a set of interleaved electrodes with full surface coverage. We searched specifically for ∼ 2.5–20 keV nuclear recoils inside the detector fiducial volume. As an illustration the number of observed events in the search for 5 (resp. 20) GeV/ c {sup 2} WIMPs are 9 (resp. 4), compared to an expected background of 6.1 (resp. 1.4). A 90% CL limit of 4.3 × 10{sup −40} cm{sup 2} (resp. 9.4 × 10{sup −44} cm{sup 2}) is set on the spin-independent WIMP-nucleon scattering cross-section for 5 (resp. 20) GeV/ c {sup 2} WIMPs. This result represents a 41-fold improvement with respect to the previous EDELWEISS-II low-mass WIMP search for 7 GeV/ c {sup 2} WIMPs. The derived constraint is in tension with hints of WIMP signals from some recent experiments, thus confirming results obtained with different detection techniques.

SAQC: SNP Array Quality Control

Directory of Open Access Journals (Sweden)

Li Ling-Hui

2011-04-01

Full Text Available Abstract Background Genome-wide single-nucleotide polymorphism (SNP arrays containing hundreds of thousands of SNPs from the human genome have proven useful for studying important human genome questions. Data quality of SNP arrays plays a key role in the accuracy and precision of downstream data analyses. However, good indices for assessing data quality of SNP arrays have not yet been developed. Results We developed new quality indices to measure the quality of SNP arrays and/or DNA samples and investigated their statistical properties. The indices quantify a departure of estimated individual-level allele frequencies (AFs from expected frequencies via standardized distances. The proposed quality indices followed lognormal distributions in several large genomic studies that we empirically evaluated. AF reference data and quality index reference data for different SNP array platforms were established based on samples from various reference populations. Furthermore, a confidence interval method based on the underlying empirical distributions of quality indices was developed to identify poor-quality SNP arrays and/or DNA samples. Analyses of authentic biological data and simulated data show that this new method is sensitive and specific for the detection of poor-quality SNP arrays and/or DNA samples. Conclusions This study introduces new quality indices, establishes references for AFs and quality indices, and develops a detection method for poor-quality SNP arrays and/or DNA samples. We have developed a new computer program that utilizes these methods called SNP Array Quality Control (SAQC. SAQC software is written in R and R-GUI and was developed as a user-friendly tool for the visualization and evaluation of data quality of genome-wide SNP arrays. The program is available online (http://www.stat.sinica.edu.tw/hsinchou/genetics/quality/SAQC.htm.

ESPRIT And Uniform Linear Arrays

Science.gov (United States)

Roy, R. H.; Goldburg, M.; Ottersten, B. E.; Swindlehurst, A. L.; Viberg, M.; Kailath, T.

1989-11-01

Abstract ¬â€?ESPRIT is a recently developed and patented technique for high-resolution estimation of signal parameters. It exploits an invariance structure designed into the sensor array to achieve a reduction in computational requirements of many orders of magnitude over previous techniques such as MUSIC, Burg's MEM, and Capon's ML, and in addition achieves performance improvement as measured by parameter estimate error variance. It is also manifestly more robust with respect to sensor errors (e.g. gain, phase, and location errors) than other methods as well. Whereas ESPRIT only requires that the sensor array possess a single invariance best visualized by considering two identical but other-wise arbitrary arrays of sensors displaced (but not rotated) with respect to each other, many arrays currently in use in various applications are uniform linear arrays of identical sensor elements. Phased array radars are commonplace in high-resolution direction finding systems, and uniform tapped delay lines (i.e., constant rate A/D converters) are the rule rather than the exception in digital signal processing systems. Such arrays possess many invariances, and are amenable to other types of analysis, which is one of the main reasons such structures are so prevalent. Recent developments in high-resolution algorithms of the signal/noise subspace genre including total least squares (TLS) ESPRIT applied to uniform linear arrays are summarized. ESPRIT is also shown to be a generalization of the root-MUSIC algorithm (applicable only to the case of uniform linear arrays of omni-directional sensors and unimodular cisoids). Comparisons with various estimator bounds, including CramerRao bounds, are presented.

Searching for Grendel: origin and global spread of the C9ORF72 repeat expansion.

Science.gov (United States)

Pliner, Hannah A; Mann, David M; Traynor, Bryan J

2014-03-01

Recent advances are uncovering more and more of the genetic architecture underlying amyotrophic lateral sclerosis (ALS), a fatal neurodegenerative condition that affects ~6,000 Americans annually. Chief among these was the discovery that a large repeat expansion in the C9ORF72 gene is responsible for an unprecedented portion of familial and sporadic ALS cases. Much has been published on how this expansion disrupts neuronal homeostasis and how gene-based therapy might be an effective treatment in the future. Nevertheless, it is instructive to look back at the origins of this important mutation. In this opinion piece, we attempt to answer three key questions concerning C9ORF72. First, how many times did the expansion occur throughout human history? Second, how old is the expansion? And finally and perhaps most importantly, how did the expansion spread throughout Europe? We speculate that the expansion occurred only once in the past, that this event took place in the Finnish population and that the Vikings and their descendants were responsible for disseminating this mutation throughout the rest of the continent.

Multisite two-photon imaging of neurons on multielectrode arrays

Science.gov (United States)

Potter, Steve M.; Lukina, Natalia; Longmuir, Kenneth J.; Wu, Yan

2001-04-01

We wish to understand how neural systems store, recall, and process information. We are using cultured networks of cortical neurons grown on microelectrode arrays as a model system for studying the emergent properties of ensembles of living neurons. We have developed a 2-way communication interface between the cultured network and a computer- generated animal, the Neurally Controlled Animat. Neural activity is used to control the behavior of the Animat, and 2- photon time-lapse imaging is carried out in order to observe the morphological changes that might underlie changes in neural processing. The 2-photon microscope is ideal for repeated imaging over hours or days, with submicron resolution and little photodamage. We have designed a computer-controlled microscope stage that allows imaging several locations in sequence, in order to collect more image data. For the latest progress, see: http://www.caltech.edu/~pinelab/PotterGroup.htm.

Shielding in ungated field emitter arrays

Energy Technology Data Exchange (ETDEWEB)

Harris, J. R. [U.S. Navy Reserve, Navy Operational Support Center New Orleans, New Orleans, Louisiana 70143 (United States); Jensen, K. L. [Code 6854, Naval Research Laboratory, Washington, D.C. 20375 (United States); Shiffler, D. A. [Directed Energy Directorate, Air Force Research Laboratory, Albuquerque, New Mexico 87117 (United States); Petillo, J. J. [Leidos, Billerica, Massachusetts 01821 (United States)

2015-05-18

Cathodes consisting of arrays of high aspect ratio field emitters are of great interest as sources of electron beams for vacuum electronic devices. The desire for high currents and current densities drives the cathode designer towards a denser array, but for ungated emitters, denser arrays also lead to increased shielding, in which the field enhancement factor β of each emitter is reduced due to the presence of the other emitters in the array. To facilitate the study of these arrays, we have developed a method for modeling high aspect ratio emitters using tapered dipole line charges. This method can be used to investigate proximity effects from similar emitters an arbitrary distance away and is much less computationally demanding than competing simulation approaches. Here, we introduce this method and use it to study shielding as a function of array geometry. Emitters with aspect ratios of 10{sup 2}–10{sup 4} are modeled, and the shielding-induced reduction in β is considered as a function of tip-to-tip spacing for emitter pairs and for large arrays with triangular and square unit cells. Shielding is found to be negligible when the emitter spacing is greater than the emitter height for the two-emitter array, or about 2.5 times the emitter height in the large arrays, in agreement with previously published results. Because the onset of shielding occurs at virtually the same emitter spacing in the square and triangular arrays, the triangular array is preferred for its higher emitter density at a given emitter spacing. The primary contribution to shielding in large arrays is found to come from emitters within a distance of three times the unit cell spacing for both square and triangular arrays.

Array architectures for iterative algorithms

Science.gov (United States)

Jagadish, Hosagrahar V.; Rao, Sailesh K.; Kailath, Thomas

1987-01-01

Regular mesh-connected arrays are shown to be isomorphic to a class of so-called regular iterative algorithms. For a wide variety of problems it is shown how to obtain appropriate iterative algorithms and then how to translate these algorithms into arrays in a systematic fashion. Several 'systolic' arrays presented in the literature are shown to be specific cases of the variety of architectures that can be derived by the techniques presented here. These include arrays for Fourier Transform, Matrix Multiplication, and Sorting.

Photovoltaic array: Power conditioner interface characteristics

Science.gov (United States)

Gonzalez, C. C.; Hill, G. M.; Ross, R. G., Jr.

1982-01-01

The electrical output (power, current, and voltage) of flat plate solar arrays changes constantly, due primarily to changes in cell temperature and irradiance level. As a result, array loads such as dc-to-ac power conditioners must be capable of accommodating widely varying input levels while maintaining operation at or near the maximum power point of the array. The array operating characteristics and extreme output limits necessary for the systematic design of array load interfaces under a wide variety of climatic conditions are studied. A number of interface parameters are examined, including optimum operating voltage, voltage energy, maximum power and current limits, and maximum open circuit voltage. The effect of array degradation and I-V curve fill factor or the array power conditioner interface is also discussed. Results are presented as normalized ratios of power conditioner parameters to array parameters, making the results universally applicable to a wide variety of system sizes, sites, and operating modes.

Pre-purchase information search and consumer satisfaction

Directory of Open Access Journals (Sweden)

D. Rousseau

1986-04-01

Full Text Available This survey examines the factors which determine consumer satisfaction with major household appliances. Hypotheses relating to pre-purchase information search, and product satisfaction as well as previous satisfactory store experience and subsequent repurchase behaviour are proposed and empirically tested, using data obtained from 55 consumers who patronized a large Eastern Cape hypermarket. Results indicate that product satisfaction is related more to market place variables than actual search behaviour. Repeat shopping intentions are associated with previous shopping experiences at the particular store, while the latter also contribute to product satisfaction. Marketing implications and future research directions are briefly discussed. Opsomming Hierdie studie ondersoek verbruikerstevredenheid met groter huishoudelike toebehore en die aanleidende oorsake daarvan. Hipoteses wat die verband tussen voorafinligtinginwinningsaktiwiteit en produktevredenheid ondersoek, asook vorige bevredigende winkelondervindings en gevolglike heraankoopgedrag, is empirics getoets met 'n steekproef van 55 verbruikers in 'n groot hipermark in die Oos-Kaap. Die resultate suggureer dat produktevredenheid meer verband hou met markplek-verwante veranderlikes as met inligtingsinwinninggedrag. Herhaalde koopvoornemens is geassosieer met vorige bevredigende koopervarmgs by die betrokke winkel terwyl laasgenoemde ook bydra tot produktevredenheid. Bemarkingsimplikasies en toekomstige navorsingsriglyne word ook kortliks bespreek.

Protein Functionalized Nanodiamond Arrays

Directory of Open Access Journals (Sweden)

Liu YL

2010-01-01

Full Text Available Abstract Various nanoscale elements are currently being explored for bio-applications, such as in bio-images, bio-detection, and bio-sensors. Among them, nanodiamonds possess remarkable features such as low bio-cytotoxicity, good optical property in fluorescent and Raman spectra, and good photostability for bio-applications. In this work, we devise techniques to position functionalized nanodiamonds on self-assembled monolayer (SAMs arrays adsorbed on silicon and ITO substrates surface using electron beam lithography techniques. The nanodiamond arrays were functionalized with lysozyme to target a certain biomolecule or protein specifically. The optical properties of the nanodiamond-protein complex arrays were characterized by a high throughput confocal microscope. The synthesized nanodiamond-lysozyme complex arrays were found to still retain their functionality in interacting with E. coli.

OPTIMAL STRATEGIES FOR CONTINUOUS GRAVITATIONAL WAVE DETECTION IN PULSAR TIMING ARRAYS

International Nuclear Information System (INIS)

Ellis, J. A.; Siemens, X.; Creighton, J. D. E.

2012-01-01

Supermassive black hole binaries (SMBHBs) are expected to emit a continuous gravitational wave signal in the pulsar timing array (PTA) frequency band (10 –9 to 10 –7 Hz). The development of data analysis techniques aimed at efficient detection and characterization of these signals is critical to the gravitational wave detection effort. In this paper, we leverage methods developed for LIGO continuous wave gravitational searches and explore the use of the F-statistic for such searches in pulsar timing data. Babak and Sesana have used this approach in the context of PTAs to show that one can resolve multiple SMBHB sources in the sky. Our work improves on several aspects of prior continuous wave search methods developed for PTA data analysis. The algorithm is implemented fully in the time domain, which naturally deals with the irregular sampling typical of PTA data and avoids spectral leakage problems associated with frequency domain methods. We take into account the fitting of the timing model and have generalized our approach to deal with both correlated and uncorrelated colored noise sources. We also develop an incoherent detection statistic that maximizes over all pulsar-dependent contributions to the likelihood. To test the effectiveness and sensitivity of our detection statistics, we perform a number of Monte Carlo simulations. We produce sensitivity curves for PTAs of various configurations and outline an implementation of a fully functional data analysis pipeline. Finally, we present a derivation of the likelihood maximized over the gravitational wave phases at the pulsar locations, which results in a vast reduction of the search parameter space.

The ASTRI mini-array within the future Cherenkov Telescope Array

Directory of Open Access Journals (Sweden)

Vercellone Stefano

2016-01-01

Full Text Available The Cherenkov Telescope Array (CTA is a large collaborative effort aimed at the design and operation of an observatory dedicated to very high-energy gamma-ray astrophysics in the energy range from a few tens of GeV to above 100 TeV, which will yield about an order of magnitude improvement in sensitivity with respect to the current major arrays (H.E.S.S., MAGIC, and VERITAS. Within this framework, the Italian National Institute for Astrophysics is leading the ASTRI project, whose main goals are the design and installation on Mt. Etna (Sicily of an end-to-end dual-mirror prototype of the CTA small size telescope (SST and the installation at the CTA Southern site of a dual-mirror SST mini-array composed of nine units with a relative distance of about 300 m. The innovative dual-mirror Schwarzschild-Couder optical solution adopted for the ASTRI Project allows us to substantially reduce the telescope plate-scale and, therefore, to adopt silicon photo-multipliers as light detectors. The ASTRI mini-array is a wider international effort. The mini-array, sensitive in the energy range 1–100 TeV and beyond with an angular resolution of a few arcmin and an energy resolution of about 10–15%, is well suited to study relatively bright sources (a few × 10−12 erg cm−2 s−1 at 10 TeV at very high energy. Prominent sources such as extreme blazars, nearby well-known BL Lac objects, Galactic pulsar wind nebulae, supernovae remnants, micro-quasars, and the Galactic Center can be observed in a previously unexplored energy range. The ASTRI mini-array will extend the current IACTs sensitivity well above a few tens of TeV and, at the same time, will allow us to compare our results on a few selected targets with those of current (HAWC and future high-altitude extensive air-shower detectors.

The hyperion particle-γ detector array

Energy Technology Data Exchange (ETDEWEB)

Hughes, R.O.; Burke, J.T.; Casperson, R.J.; Ota, S. [Nuclear and Chemical Sciences Division, Lawrence Livermore National Laboratory, Livermore, CA 94550 (United States); Fisher, S.; Parker, J. [Science, Technology and Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA 94550 (United States); Beausang, C.W. [Department of Physics, University of Richmond, 28 Westhampton Way, Richmond, VA 23173 (United States); Dag, M. [Cyclotron Institute, Texas A& M University, College Station, TX 77840 (United States); Humby, P. [Department of Physics, University of Richmond, 28 Westhampton Way, Richmond, VA 23173 (United States); Department of Physics, University of Surrey, Surrey GU27XH (United Kingdom); Koglin, J. [Nuclear and Chemical Sciences Division, Lawrence Livermore National Laboratory, Livermore, CA 94550 (United States); McCleskey, E.; McIntosh, A.B.; Saastamoinen, A. [Cyclotron Institute, Texas A& M University, College Station, TX 77840 (United States); Tamashiro, A.S. [Department of Nuclear Science and Engineering, Oregon State University, Corvallis, OR 97331 (United States); Wilson, E. [Department of Physics, University of Richmond, 28 Westhampton Way, Richmond, VA 23173 (United States); Wu, T.C. [Department of Physics and Astronomy, University of Utah, Salt Lake City UT 84112-0830 (United States)

2017-06-01

Hyperion is a new high-efficiency charged-particle γ-ray detector array which consists of a segmented silicon telescope for charged-particle detection and up to fourteen high-purity germanium clover detectors for the detection of coincident γ rays. The array will be used in nuclear physics measurements and Stockpile Stewardship studies and replaces the STARLiTeR array. This article discusses the features of the array and presents data collected with the array in the commissioning experiment.

SU-E-T-758: To Determine the Source Dwell Positions of HDR Brachytherapy Using 2D 729 Ion Chamber Array

Energy Technology Data Exchange (ETDEWEB)

Kumar, Syam [Malabar Cancer Centre, Kannur, Kerala (India); Sitha [University of Calicut, Calicut, Kerala (India)

2015-06-15

Purpose: Determination of source dwell positions of HDR brachytherapy using 2D 729 ion chamber array Methods: Nucletron microselectron HDR and PTW 2D array were used for the study. Different dwell positions were assigned in the HDR machine. Rigid interstitial needles and vaginal applicator were positioned on the 2D array. The 2D array was exposed for this programmed dwell positions. The positional accuracy of the source was analyzed after the irradiation of the 2D array. This was repeated for different dwell positions. Different test plans were transferred from the Oncentra planning system and irradiated with the same applicator position on the 2D array. The results were analyzed using the in house developed excel program. Results: Assigned dwell positions versus corresponding detector response were analyzed. The results show very good agreement with the film measurements. No significant variation found between the planned and measured dwell positions. Average dose response with 2D array between the planned and nearby dwell positions was found to be 0.0804 Gy for vaginal cylinder applicator and 0.1234 Gy for interstitial rigid needles. Standard deviation between the doses for all the measured dwell positions for interstitial rigid needle for 1 cm spaced positions were found to be 0.33 and 0.37 for 2cm spaced dwell positions. For intracavitory vaginal applicator this was found to be 0.21 for 1 cm spaced dwell positions and 0.06 for 2cm spaced dwell positions. Intracavitory test plans reproduced on the 2D array with the same applicator positions shows the ideal dose distribution with the TPS planned. Conclusion: 2D array is a good tool for determining the dwell position of HDR brachytherapy. With the in-house developed program in excel it is easy and accurate. The traditional way with film analysis can be replaced by this method, as the films will be more costly.

SU-E-T-758: To Determine the Source Dwell Positions of HDR Brachytherapy Using 2D 729 Ion Chamber Array

International Nuclear Information System (INIS)

Kumar, Syam; Sitha

2015-01-01

Purpose: Determination of source dwell positions of HDR brachytherapy using 2D 729 ion chamber array Methods: Nucletron microselectron HDR and PTW 2D array were used for the study. Different dwell positions were assigned in the HDR machine. Rigid interstitial needles and vaginal applicator were positioned on the 2D array. The 2D array was exposed for this programmed dwell positions. The positional accuracy of the source was analyzed after the irradiation of the 2D array. This was repeated for different dwell positions. Different test plans were transferred from the Oncentra planning system and irradiated with the same applicator position on the 2D array. The results were analyzed using the in house developed excel program. Results: Assigned dwell positions versus corresponding detector response were analyzed. The results show very good agreement with the film measurements. No significant variation found between the planned and measured dwell positions. Average dose response with 2D array between the planned and nearby dwell positions was found to be 0.0804 Gy for vaginal cylinder applicator and 0.1234 Gy for interstitial rigid needles. Standard deviation between the doses for all the measured dwell positions for interstitial rigid needle for 1 cm spaced positions were found to be 0.33 and 0.37 for 2cm spaced dwell positions. For intracavitory vaginal applicator this was found to be 0.21 for 1 cm spaced dwell positions and 0.06 for 2cm spaced dwell positions. Intracavitory test plans reproduced on the 2D array with the same applicator positions shows the ideal dose distribution with the TPS planned. Conclusion: 2D array is a good tool for determining the dwell position of HDR brachytherapy. With the in-house developed program in excel it is easy and accurate. The traditional way with film analysis can be replaced by this method, as the films will be more costly

SearchResultFinder: federated search made easy

NARCIS (Netherlands)

Trieschnigg, Rudolf Berend; Tjin-Kam-Jet, Kien; Hiemstra, Djoerd

Building a federated search engine based on a large number existing web search engines is a challenge: implementing the programming interface (API) for each search engine is an exacting and time-consuming job. In this demonstration we present SearchResultFinder, a browser plugin which speeds up

The Pentapeptide Repeat Proteins

OpenAIRE

Vetting, Matthew W.; Hegde, Subray S.; Fajardo, J. Eduardo; Fiser, Andras; Roderick, Steven L.; Takiff, Howard E.; Blanchard, John S.

2006-01-01

The Pentapeptide Repeat Protein (PRP) family has over 500 members in the prokaryotic and eukaryotic kingdoms. These proteins are composed of, or contain domains composed of, tandemly repeated amino acid sequences with a consensus sequence of [S,T,A,V][D,N][L,F]-[S,T,R][G]. The biochemical function of the vast majority of PRP family members is unknown. The three-dimensional structure of the first member of the PRP family was determined for the fluoroquinolone resistance protein (MfpA) from Myc...

Repeatability of quantitative 18F-FLT uptake measurements in solid tumors: an individual patient data multi-center meta-analysis.

Science.gov (United States)

Kramer, G M; Liu, Y; de Langen, A J; Jansma, E P; Trigonis, I; Asselin, M-C; Jackson, A; Kenny, L; Aboagye, E O; Hoekstra, O S; Boellaard, R

2018-06-01

3'-deoxy-3'-[ 18 F]fluorothymidine ( 18 F-FLT) positron emission tomography (PET) provides a non-invasive method to assess cellular proliferation and response to antitumor therapy. Quantitative 18 F-FLT uptake metrics are being used for evaluation of proliferative response in investigational setting, however multi-center repeatability needs to be established. The aim of this study was to determine the repeatability of 18 F-FLT tumor uptake metrics by re-analyzing individual patient data from previously published reports using the same tumor segmentation method and repeatability metrics across cohorts. A systematic search in PubMed, EMBASE.com and the Cochrane Library from inception-October 2016 yielded five 18 F-FLT repeatability cohorts in solid tumors. 18 F-FLT avid lesions were delineated using a 50% isocontour adapted for local background on test and retest scans. SUV max , SUV mean , SUV peak , proliferative volume and total lesion uptake (TLU) were calculated. Repeatability was assessed using the repeatability coefficient (RC = 1.96 × SD of test-retest differences), linear regression analysis, and the intra-class correlation coefficient (ICC). The impact of different lesion selection criteria was also evaluated. Images from four cohorts containing 30 patients with 52 lesions were obtained and analyzed (ten in breast cancer, nine in head and neck squamous cell carcinoma, and 33 in non-small cell lung cancer patients). A good correlation was found between test-retest data for all 18 F-FLT uptake metrics (R 2  ≥ 0.93; ICC ≥ 0.96). Best repeatability was found for SUV peak (RC: 23.1%), without significant differences in RC between different SUV metrics. Repeatability of proliferative volume (RC: 36.0%) and TLU (RC: 36.4%) was worse than SUV. Lesion selection methods based on SUV max  ≥ 4.0 improved the repeatability of volumetric metrics (RC: 26-28%), but did not affect the repeatability of SUV metrics. In multi-center studies

Direct repeat sequences are essential for function of the cis-acting locus of transfer (clt) of Streptomyces phaeochromogenes plasmid pJV1.

Science.gov (United States)

Franco, Bernardo; González-Cerón, Gabriela; Servín-González, Luis

2003-11-01

The functionality of direct and inverted repeat sequences inside the cis acting locus of transfer (clt) of the Streptomyces plasmid pJV1 was determined by testing the effect of different deletions on plasmid transfer. The results show that the single most important element for pJV1 clt function is a series of evenly spaced 9 bp long direct repeats which match the consensus CCGCACA(C/G)(C/G), since their deletion caused a dramatic reduction in plasmid transfer. The presence of these repeats in the absence of any other clt sequences allowed plasmid transfer to occur at a frequency that was at least two orders of magnitude higher than that obtained in the complete absence of clt. A database search revealed regions with a similar organization, and in the same position, in Streptomyces plasmids pSN22 and pSLS, which have transfer proteins homologous to those of pJV1.

Beam pattern improvement by compensating array nonuniformities in a guided wave phased array

International Nuclear Information System (INIS)

Kwon, Hyu-Sang; Lee, Seung-Seok; Kim, Jin-Yeon

2013-01-01

This paper presents a simple data processing algorithm which can improve the performance of a uniform circular array based on guided wave transducers. The algorithm, being intended to be used with the delay-and-sum beamformer, effectively eliminates the effects of nonuniformities that can significantly degrade the beam pattern. Nonuniformities can arise intrinsically from the array geometry when the circular array is transformed to a linear array for beam steering and extrinsically from unequal conditions of transducers such as element-to-element variations of sensitivity and directivity. The effects of nonuniformities are compensated by appropriately imposing weight factors on the elements in the projected linear array. Different cases are simulated, where the improvements of the beam pattern, especially the level of the highest sidelobe, are clearly seen, and related issues are discussed. An experiment is performed which uses A0 mode Lamb waves in a steel plate, to demonstrate the usefulness of the proposed method. The discrepancy between theoretical and experimental beam patterns is explained by accounting for near-field effects. (paper)

A novel rat genomic simple repeat DNA with RNA-homology shows triplex (H-DNA)-like structure and tissue-specific RNA expression

International Nuclear Information System (INIS)

Dey, Indranil; Rath, Pramod C.

2005-01-01

Mammalian genome contains a wide variety of repetitive DNA sequences of relatively unknown function. We report a novel 227 bp simple repeat DNA (3.3 DNA) with a d {(GA) 7 A (AG) 7 } dinucleotide mirror repeat from the rat (Rattus norvegicus) genome. 3.3 DNA showed 75-85% homology with several eukaryotic mRNAs due to (GA/CU) n dinucleotide repeats by nBlast search and a dispersed distribution in the rat genome by Southern blot hybridization with [ 32 P]3.3 DNA. The d {(GA) 7 A (AG) 7 } mirror repeat formed a triplex (H-DNA)-like structure in vitro. Two large RNAs of 9.1 and 7.5 kb were detected by [ 32 P]3.3 DNA in rat brain by Northern blot hybridization indicating expression of such simple sequence repeats at RNA level in vivo. Further, several cDNAs were isolated from a rat cDNA library by [ 32 P]3.3 DNA probe. Three such cDNAs showed tissue-specific RNA expression in rat. pRT 4.1 cDNA showed strong expression of a 2.39 kb RNA in brain and spleen, pRT 5.5 cDNA showed strong expression of a 2.8 kb RNA in brain and a 3.9 kb RNA in lungs, and pRT 11.4 cDNA showed weak expression of a 2.4 kb RNA in lungs. Thus, genomic simple sequence repeats containing d (GA/CT) n dinucleotides are transcriptionally expressed and regulated in rat tissues. Such d (GA/CT) n dinucleotide repeats may form structural elements (e.g., triplex) which may be sites for functional regulation of genomic coding sequences as well as RNAs. This may be a general function of such transcriptionally active simple sequence repeats widely dispersed in mammalian genome

Assessment of Embedded Conjugated Polymer Sensor Arrays for Potential Load Transmission Measurement in Orthopaedic Implants

Directory of Open Access Journals (Sweden)

Carolina Micolini

2017-11-01

Full Text Available Load transfer through orthopaedic joint implants is poorly understood. The longer-term outcomes of these implants are just starting to be studied, making it imperative to monitor contact loads across the entire joint implant interface to elucidate the force transmission and distribution mechanisms exhibited by these implants in service. This study proposes and demonstrates the design, implementation, and characterization of a 3D-printed smart polymer sensor array using conductive polyaniline (PANI structures embedded within a polymeric parent phase. The piezoresistive characteristics of PANI were investigated to characterize the sensing behaviour inherent to these embedded pressure sensor arrays, including the experimental determination of the stable response of PANI to continuous loading, stability throughout the course of loading and unloading cycles, and finally sensor repeatability and linearity in response to incremental loading cycles. This specially developed multi-material additive manufacturing process for PANI is shown be an attractive approach for the fabrication of implant components having embedded smart-polymer sensors, which could ultimately be employed for the measurement and analysis of joint loads in orthopaedic implants for in vitro testing.

A high-speed drug interaction search system for ease of use in the clinical environment.

Science.gov (United States)

Takada, Masahiro; Inada, Hiroshi; Nakazawa, Kazuo; Tani, Shoko; Iwata, Michiaki; Sugimoto, Yoshihisa; Nagata, Satoru

2012-12-01

With the advancement of pharmaceutical development, drug interactions have become increasingly complex. As a result, a computer-based drug interaction search system is required to organize the whole of drug interaction data. To overcome problems faced with the existing systems, we developed a drug interaction search system using a hash table, which offers higher processing speeds and easier maintenance operations compared with relational databases (RDB). In order to compare the performance of our system and MySQL RDB in terms of search speed, drug interaction searches were repeated for all 45 possible combinations of two out of a group of 10 drugs for two cases: 5,604 and 56,040 drug interaction data. As the principal result, our system was able to process the search approximately 19 times faster than the system using the MySQL RDB. Our system also has several other merits such as that drug interaction data can be created in comma-separated value (CSV) format, thereby facilitating data maintenance. Although our system uses the well-known method of a hash table, it is expected to resolve problems common to existing systems and to be an effective system that enables the safe management of drugs.

The surface detector array of the Telescope Array experiment

Energy Technology Data Exchange (ETDEWEB)

Abu-Zayyad, T. [University of Utah, High Energy Astrophysics Institute, Salt Lake City, Utah (United States); Aida, R. [University of Yamanashi, Interdisciplinary Graduate School of Medicine and Engineering, Kofu, Yamanashi (Japan); Allen, M.; Anderson, R. [University of Utah, High Energy Astrophysics Institute, Salt Lake City, Utah (United States); Azuma, R. [Tokyo Institute of Technology, Meguro, Tokyo (Japan); Barcikowski, E.; Belz, J.W.; Bergman, D.R.; Blake, S.A.; Cady, R. [University of Utah, High Energy Astrophysics Institute, Salt Lake City, Utah (United States); Cheon, B.G. [Hanyang University, Seongdong-gu, Seoul (Korea, Republic of); Chiba, J. [Tokyo University of Science, Noda, Chiba (Japan); Chikawa, M. [Kinki University, Higashi Osaka, Osaka (Japan); Cho, E.J. [Hanyang University, Seongdong-gu, Seoul (Korea, Republic of); Cho, W.R. [Yonsei University, Seodaemun-gu, Seoul (Korea, Republic of); Fujii, H. [Institute of Particle and Nuclear Studies, KEK, Tsukuba, Ibaraki (Japan); Fujii, T. [Osaka City University, Osaka, Osaka (Japan); Fukuda, T. [Tokyo Institute of Technology, Meguro, Tokyo (Japan); Fukushima, M. [Institute for Cosmic Ray Research, University of Tokyo, Kashiwa, Chiba (Japan); University of Tokyo, Institute for the Physics and Mathematics of the Universe, Kashiwa, Chiba (Japan); Gorbunov, D. [Institute for Nuclear Research of the Russian Academy of Sciences, Moscow (Russian Federation); and others

2012-10-11

The Telescope Array (TA) experiment, located in the western desert of Utah, USA, is designed for the observation of extensive air showers from extremely high energy cosmic rays. The experiment has a surface detector array surrounded by three fluorescence detectors to enable simultaneous detection of shower particles at ground level and fluorescence photons along the shower track. The TA surface detectors and fluorescence detectors started full hybrid observation in March, 2008. In this article we describe the design and technical features of the TA surface detector.

The surface detector array of the Telescope Array experiment

International Nuclear Information System (INIS)

Abu-Zayyad, T.; Aida, R.; Allen, M.; Anderson, R.; Azuma, R.; Barcikowski, E.; Belz, J.W.; Bergman, D.R.; Blake, S.A.; Cady, R.; Cheon, B.G.; Chiba, J.; Chikawa, M.; Cho, E.J.; Cho, W.R.; Fujii, H.; Fujii, T.; Fukuda, T.; Fukushima, M.; Gorbunov, D.

2012-01-01

The Telescope Array (TA) experiment, located in the western desert of Utah, USA, is designed for the observation of extensive air showers from extremely high energy cosmic rays. The experiment has a surface detector array surrounded by three fluorescence detectors to enable simultaneous detection of shower particles at ground level and fluorescence photons along the shower track. The TA surface detectors and fluorescence detectors started full hybrid observation in March, 2008. In this article we describe the design and technical features of the TA surface detector.

A group arrival retrial G - queue with multi optional stages of service, orbital search and server breakdown

Science.gov (United States)

Radha, J.; Indhira, K.; Chandrasekaran, V. M.

2017-11-01

A group arrival feedback retrial queue with k optional stages of service and orbital search policy is studied. Any arriving group of customer finds the server free, one from the group enters into the first stage of service and the rest of the group join into the orbit. After completion of the i th stage of service, the customer under service may have the option to choose (i+1)th stage of service with θi probability, with pI probability may join into orbit as feedback customer or may leave the system with {q}i=≤ft\\{\\begin{array}{l}1-{p}i-{θ }i,i=1,2,\\cdots k-1\\ 1-{p}i,i=k\\end{array}\\right\\} probability. Busy server may get to breakdown due to the arrival of negative customers and the service channel will fail for a short interval of time. At the completion of service or repair, the server searches for the customer in the orbit (if any) with probability α or remains idle with probability 1-α. By using the supplementary variable method, steady state probability generating function for system size, some system performance measures are discussed.

A comparison of two search methods for determining the scope of systematic reviews and health technology assessments.

Science.gov (United States)

Forsetlund, Louise; Kirkehei, Ingvild; Harboe, Ingrid; Odgaard-Jensen, Jan

2012-01-01

This study aims to compare two different search methods for determining the scope of a requested systematic review or health technology assessment. The first method (called the Direct Search Method) included performing direct searches in the Cochrane Database of Systematic Reviews (CDSR), Database of Abstracts of Reviews of Effects (DARE) and the Health Technology Assessments (HTA). Using the comparison method (called the NHS Search Engine) we performed searches by means of the search engine of the British National Health Service, NHS Evidence. We used an adapted cross-over design with a random allocation of fifty-five requests for systematic reviews. The main analyses were based on repeated measurements adjusted for the order in which the searches were conducted. The Direct Search Method generated on average fewer hits (48 percent [95 percent confidence interval {CI} 6 percent to 72 percent], had a higher precision (0.22 [95 percent CI, 0.13 to 0.30]) and more unique hits than when searching by means of the NHS Search Engine (50 percent [95 percent CI, 7 percent to 110 percent]). On the other hand, the Direct Search Method took longer (14.58 minutes [95 percent CI, 7.20 to 21.97]) and was perceived as somewhat less user-friendly than the NHS Search Engine (-0.60 [95 percent CI, -1.11 to -0.09]). Although the Direct Search Method had some drawbacks such as being more time-consuming and less user-friendly, it generated more unique hits than the NHS Search Engine, retrieved on average fewer references and fewer irrelevant results.

Optimizing an Actuator Array for the Control of Multi-Frequency Noise in Aircraft Interiors

Science.gov (United States)

Palumbo, D. L.; Padula, S. L.

1997-01-01

Techniques developed for selecting an optimized actuator array for interior noise reduction at a single frequency are extended to the multi-frequency case. Transfer functions for 64 actuators were obtained at 5 frequencies from ground testing the rear section of a fully trimmed DC-9 fuselage. A single loudspeaker facing the left side of the aircraft was the primary source. A combinatorial search procedure (tabu search) was employed to find optimum actuator subsets of from 2 to 16 actuators. Noise reduction predictions derived from the transfer functions were used as a basis for evaluating actuator subsets during optimization. Results indicate that it is necessary to constrain actuator forces during optimization. Unconstrained optimizations selected actuators which require unrealistically large forces. Two methods of constraint are evaluated. It is shown that a fast, but approximate, method yields results equivalent to an accurate, but computationally expensive, method.

Search for first harmonic modulation in the right ascension distribution of cosmic rays detected at the Pierre Auger Observatory

International Nuclear Information System (INIS)

Almeida, Rogerio M. de

2011-01-01

Full text: The large-scale distribution of the arrival directions of Ultra-High Energy Cosmic Rays (UHECRs) is, together with the spectrum and the mass composition, an important observable in attempts to understand their nature and origin. In this work we show the results of searches for dipolar-type anisotropies in different energy ranges above 2.5 x 10 17 eV with the surface detector array of the Pierre Auger Observatory. For events with energy above 1 EeV we present searches for first harmonic modulations in right-ascension based on the classical Rayleigh analysis slightly modified to account for the small variations of the exposure. The results for events with energy below 1 EeV are derived using simple event counting rate differences between Eastward and Westward directions in order to take into account the detector-dependent variations in the counting rate because in this range of energy the detection efficiency of the array depends on zenith angle and composition. Using relative rates, this technique allows a search for anisotropy in right ascension without requiring any evaluation of the detection efficiency. Upper limits on the amplitudes are obtained, which provide the most stringent bounds at present, being below 2% at 99% C.L. for EeV energies. We also compare our results to those of previous experiments as well as with some theoretical expectations. (author)

Flexible eddy current coil arrays

International Nuclear Information System (INIS)

Krampfner, Y.; Johnson, D.P.

1987-01-01

A novel approach was devised to overcome certain limitations of conventional eddy current testing. The typical single-element hand-wound probe was replaced with a two dimensional array of spirally wound probe elements deposited on a thin, flexible polyimide substrate. This provides full and reliable coverage of the test area and eliminates the need for scanning. The flexible substrate construction of the array allows the probes to conform to irregular part geometries, such as turbine blades and tubing, thereby eliminating the need for specialized probes for each geometry. Additionally, the batch manufacturing process of the array can yield highly uniform and reproducible coil geometries. The array is driven by a portable computer-based eddy current instrument, smartEDDY/sup TM/, capable of two-frequency operation, and offers a great deal of versatility and flexibility due to its software-based architecture. The array is coupled to the instrument via an 80-switch multiplexer that can be configured to address up to 1600 probes. The individual array elements may be addressed in any desired sequence, as defined by the software

In situ detection of tandem DNA repeat length

Energy Technology Data Exchange (ETDEWEB)

Yaar, R.; Szafranski, P.; Cantor, C.R.; Smith, C.L. [Boston Univ., MA (United States)

1996-11-01

A simple method for scoring short tandem DNA repeats is presented. An oligonucleotide target, containing tandem repeats embedded in a unique sequence, was hybridized to a set of complementary probes, containing tandem repeats of known lengths. Single-stranded loop structures formed on duplexes containing a mismatched (different) number of tandem repeats. No loop structure formed on duplexes containing a matched (identical) number of tandem repeats. The matched and mismatched loop structures were enzymatically distinguished and differentially labeled by treatment with S1 nuclease and the Klenow fragment of DNA polymerase. 7 refs., 4 figs.

Automated genotyping of dinucleotide repeat markers

Energy Technology Data Exchange (ETDEWEB)

Perlin, M.W.; Hoffman, E.P. [Carnegie Mellon Univ., Pittsburgh, PA (United States)]|[Univ. of Pittsburgh, PA (United States)

1994-09-01

The dinucleotide repeats (i.e., microsatellites) such as CA-repeats are a highly polymorphic, highly abundant class of PCR-amplifiable markers that have greatly streamlined genetic mapping experimentation. It is expected that over 30,000 such markers (including tri- and tetranucleotide repeats) will be characterized for routine use in the next few years. Since only size determination, and not sequencing, is required to determine alleles, in principle, dinucleotide repeat genotyping is easily performed on electrophoretic gels, and can be automated using DNA sequencers. Unfortunately, PCR stuttering with these markers generates not one band for each allele, but a pattern of bands. Since closely spaced alleles must be disambiguated by human scoring, this poses a key obstacle to full automation. We have developed methods that overcome this obstacle. Our model is that the observed data is generated by arithmetic superposition (i.e., convolution) of multiple allele patterns. By quantitatively measuring the size of each component band, and exploiting the unique stutter pattern associated with each marker, closely spaced alleles can be deconvolved; this unambiguously reconstructs the {open_quotes}true{close_quotes} allele bands, with stutter artifact removed. We used this approach in a system for automated diagnosis of (X-linked) Duchenne muscular dystrophy; four multiplexed CA-repeats within the dystrophin gene were assayed on a DNA sequencer. Our method accurately detected small variations in gel migration that shifted the allele size estimate. In 167 nonmutated alleles, 89% (149/167) showed no size variation, 9% (15/167) showed 1 bp variation, and 2% (3/167) showed 2 bp variation. We are currently developing a library of dinucleotide repeat patterns; together with our deconvolution methods, this library will enable fully automated genotyping of dinucleotide repeats from sizing data.

A pilot survey for transients and variables with the Australian Square Kilometre Array Pathfinder

Science.gov (United States)

Bhandari, S.; Bannister, K. W.; Murphy, T.; Bell, M.; Raja, W.; Marvil, J.; Hancock, P. J.; Whiting, M.; Flynn, C. M.; Collier, J. D.; Kaplan, D. L.; Allison, J. R.; Anderson, C.; Heywood, I.; Hotan, A.; Hunstead, R.; Lee-Waddell, K.; Madrid, J. P.; McConnell, D.; Popping, A.; Rhee, J.; Sadler, E.; Voronkov, M. A.

2018-05-01

We present a pilot search for variable and transient sources at 1.4 GHz with the Australian Square Kilometre Array Pathfinder (ASKAP). The search was performed in a 30 deg2 area centred on the NGC 7232 galaxy group over 8 epochs and observed with a near-daily cadence. The search yielded nine potential variable sources, rejecting the null hypothesis that the flux densities of these sources do not change with 99.9% confidence. These nine sources displayed flux density variations with modulation indices m ≥ 0.1 above our flux density limit of ˜1.5 mJy. They are identified to be compact AGN/quasars or galaxies hosting an AGN, whose variability is consistent with refractive interstellar scintillation. We also detect a highly variable source with modulation index m > 0.5 over a time interval of a decade between the Sydney University Molonglo Sky Survey (SUMSS) and our latest ASKAP observations. We find the source to be consistent with the properties of long-term variability of a quasar. No transients were detected on timescales of days and we place an upper limit ρt pilot survey, but better sensitivity, and will detect and monitor rarer brighter events.

In situ synthesis of protein arrays.

Science.gov (United States)