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Sample records for related rice cultivars

  1. Iron plaque formation on roots of different rice cultivars and the relation with lead uptake.

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    Liu, Jianguo; Leng, Xuemei; Wang, Mingxin; Zhu, Zhongquan; Dai, Qinghua

    2011-07-01

    The relationships between lead (Pb) uptake and iron/manganese plaque formation on rice roots were investigated with three cultivars. The results showed that the rice cultivars with indica consanguinity were more sensitive to soil Pb stress than the cultivar with japonica consanguinity. Pb concentrations and distribution ratios in root tissues were in the order: Shanyou 63 > Yangdao 6 > Wuyunjing 7, but Pb and Fe concentrations and distribution ratios in the plaques showed a reverse order. Mn concentrations and distribution ratios in the plaques of Wuyunjing 7 were significantly higher (P rice root can provide a barrier to soil Pb stress. The plaque will increase sequestration of Pb on rice root surface and in the rhizosphere, providing a means of external exclusion of soil Pb to some extent. Copyright © 2011 Elsevier Inc. All rights reserved.

  2. Uptake and translocation of Cd in different rice cultivars and the relation with Cd accumulation in rice grain

    International Nuclear Information System (INIS)

    Liu Jianguo; Qian Min; Cai Guoliang; Yang Jianchang; Zhu Qingsen

    2007-01-01

    The variations among six rice cultivars in cadmium (Cd) uptake and translocation were investigated with pot soil experiments. The results showed that only a very small portion (0.73%) of Cd absorbed by rice plant was transferred into grain. With regard to plant total Cd uptake, Cd concentrations and quantity accumulations in roots, stems and leaves, the differences among the cultivars (between the largest one and the smallest one) were less than one time. But for Cd concentrations and Cd quantity accumulations in the grains, the differences were more than five and eight times, respectively. With respect to Cd distribution portions in plant organs, the diversities among the cultivars were also small in roots, stems and leaves, but much larger in grains. Grain Cd concentrations correlated positively and significantly (P < 0.01) with Cd quantity accumulations in plant, Cd distribution ratios to aboveground parts, and especially with Cd distribution ratios from aboveground parts to the grain. The results indicated that Cd concentration in rice grain was governed somewhat by plant Cd uptake and the transport of Cd from root to shoot, and in a greater extent, by the transport of Cd from shoot to grain. Cd was not distributed evenly in different products after rice grain processing. The average Cd concentration in cortex (embryo) was five times more than that in chaff and polished rice. With regard to Cd quantity accumulation in the products, near 40% in cortex (embryo), 45% in polished rice and 15% in chaff averagely

  3. Competitividade relativa entre cultivares de arroz irrigado e biótipo de capim-Arroz (Echinochloa spp. Relative competitivity between flooded rice cultivars and Echinochloa spp.

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    D. Agostinetto

    2008-01-01

    Full Text Available As espécies pertencentes ao gênero Echinochloa se destacam como principais infestantes das lavouras de arroz irrigado do Rio Grande do Sul, causando dano econômico à cultura devido à elevada competitividade pelos recursos do ambiente. O trabalho teve por objetivo comparar as habilidades competitivas relativas entre dois cultivares de arroz e um biótipo de capim-arroz. Para isso, foram realizados experimentos em casa de vegetação na estação de crescimento 2006/07, em delineamento experimental inteiramente casualizado, com quatro repetições. Os tratamentos foram arranjados em série substitutiva, com cinco proporções de plantas de arroz e do competidor (100:0; 75:25; 50:50; 25:75; e 0:100, mantendo a população constante de 24 plantas vaso-1 das espécies associadas. O arroz foi representado pelos cultivares IRGA 417 ou BR-IRGA 410, e o competidor, pelo biótipo de capim-arroz. A análise da competitividade foi efetuada por meio de diagramas aplicados a experimentos substitutivos e através de índices de competitividade relativa. As variáveis estudadas foram área foliar e massa seca aérea das plantas. Os resultados mostram que houve competição entre os cultivares de arroz IRGA 417 ou BR-IRGA 410 com o capim-arroz, independentemente da proporção de plantas na associação, com redução na área foliar e massa seca da parte aérea dos competidores. O capim-arroz apresenta menor perda de produtividade relativa, reduz as variáveis morfológicas do arroz e demonstra possuir superioridade competitiva, comparativamente aos cultivares de arroz.The Echinochloa species are among the most important weeds in flooded rice fields of Rio Grande do Sul, causing economic losses to the culture, due to its high competivity for environmental resources. The objective of this study was to compare the relative competitive abilities between two rice cultivars and an Echinochloa spp. biotype. Greenhouse experiments were conducted in 2006

  4. Genotypic differences among rice cultivars in lead accumulation and translocation and the relation with grain Pb levels.

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    Liu, Jianguo; Ma, Xinmei; Wang, Mingxin; Sun, Xiangwu

    2013-04-01

    In order to understand the differences among rice cultivars and genotypes in lead (Pb) uptake and translocation, and their relationship with Pb accumulation in rice grains, pot soil experiments were carried out with six rice cultivars of diverse types under different soil Pb levels. The results showed that the differences among rice cultivars in Pb concentrations varied largely with plant organs, and the magnitudes of the differences were larger in ears and grains than in shoots and roots. Pb concentrations in ears and grains differed significantly (price types, and were in the order: Hybrid Indica>Indica>Japonica. Grain Pb concentrations were correlated significantly (price cultivars in translocation factors (TF) of Pb from shoots to ears/grains were generally larger than the TF of Pb from roots to shoots. The differences among rice types in TF of Pb from shoots to ears/grains were generally significant (pIndica>Japonica. But the differences between rice types in the TF of Pb from roots to shoots were mostly insignificant (p>0.05). In general, grain Pb concentrations were correlated significantly (p0.05) with the TF of Pb from roots to shoots. So the Pb in shoots, but not in roots, may be the main sources of Pb transferred to the grains. Pb concentrations in rice grains are likely to be determined mainly by the translocations of Pb from shoots to the grains, and little by the transport from roots to shoots. Pb concentration in ears of heading can be used as an index of Pb level in the grains. Copyright © 2012 Elsevier Inc. All rights reserved.

  5. Performance, Economics and Potential Impact of Perennial Rice PR23 Relative to Annual Rice Cultivars at Multiple Locations in Yunnan Province of China

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    Guangfu Huang

    2018-04-01

    Full Text Available Perennial grain crops hold the promise of stabilizing fragile lands, while contributing grain and grazing in mixed farming systems. Recently, perennial rice was reported to successfully survive, regrow, and yield across a diverse range of environments in Southern China and Laos, with perennial rice PR23 being identified as a prime candidate for release to farmers. This paper reports the evaluation of PR23 for release, by (1 comparing its survival, regrowth, performance, and adaptation with preferred annual rices across nine ecological regions in southern Yunnan Province of China; (2 examining the economic costs and benefits of perennial versus annual rice there; and (3 discussing the evidence for the release of PR23 as a broadly adapted and acceptable cultivar for farmers. Overall, the grain yield of PR23 was similar to those of the preferred annual rice cultivars RD23 and HXR7, but the economic analysis indicated substantial labour savings for farmers by growing the perennial instead of the annual. PR23 was comparable to the annuals in phenology, plant height, grain yield, and grain size, and was acceptable in grain and cooking quality. Farmers were keen to grow it because of reduced costs and especially savings in labour. PR23 is proposed for release to farmers because of its comparable grain yields to annual rices, its acceptable grain and milling quality, its cost and labour savings, and the likely benefits to soil stability and ecological sustainability, along with more flexible farming systems.

  6. Características de plantas de cultivares de arroz irrigado relacionadas à habilidade competitiva com plantas concorrentes Characteristics of flooded rice cultivar plants related to competitive ability against weeds concurrent plants

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    N.G. Fleck

    2003-04-01

    , variations in leaf area, plant height, and dry weight of rice plants were evaluated. The data were used to calculate leaf area rate (LAR, relative growth rate (RGR, and net assimilation rate (NAR of the cultivars. The cultivars Ligeirinho and XL 6 presented the fastest increments in leaf area, plant height, and dry weight, reaching the highest soil cover values, together with the cultivar IR 841. On the other hand, cultivars Bluebelle and Formosa showed slow absolute growth during the evaluated period, even though presenting the highest values for RGR and NAR, overall.

  7. Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms.

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    Yamamoto, Toshio; Nagasaki, Hideki; Yonemaru, Jun-ichi; Ebana, Kaworu; Nakajima, Maiko; Shibaya, Taeko; Yano, Masahiro

    2010-04-27

    To create useful gene combinations in crop breeding, it is necessary to clarify the dynamics of the genome composition created by breeding practices. A large quantity of single-nucleotide polymorphism (SNP) data is required to permit discrimination of chromosome segments among modern cultivars, which are genetically related. Here, we used a high-throughput sequencer to conduct whole-genome sequencing of an elite Japanese rice cultivar, Koshihikari, which is closely related to Nipponbare, whose genome sequencing has been completed. Then we designed a high-throughput typing array based on the SNP information by comparison of the two sequences. Finally, we applied this array to analyze historical representative rice cultivars to understand the dynamics of their genome composition. The total 5.89-Gb sequence for Koshihikari, equivalent to 15.7 x the entire rice genome, was mapped using the Pseudomolecules 4.0 database for Nipponbare. The resultant Koshihikari genome sequence corresponded to 80.1% of the Nipponbare sequence and led to the identification of 67,051 SNPs. A high-throughput typing array consisting of 1917 SNP sites distributed throughout the genome was designed to genotype 151 representative Japanese cultivars that have been grown during the past 150 years. We could identify the ancestral origin of the pedigree haplotypes in 60.9% of the Koshihikari genome and 18 consensus haplotype blocks which are inherited from traditional landraces to current improved varieties. Moreover, it was predicted that modern breeding practices have generally decreased genetic diversity Detection of genome-wide SNPs by both high-throughput sequencer and typing array made it possible to evaluate genomic composition of genetically related rice varieties. With the aid of their pedigree information, we clarified the dynamics of chromosome recombination during the historical rice breeding process. We also found several genomic regions decreasing genetic diversity which might be

  8. Differential activation of genes related to aluminium tolerance in two contrasting rice cultivars.

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    Roselló, Maite; Poschenrieder, Charlotte; Gunsé, Benet; Barceló, Juan; Llugany, Mercè

    2015-11-01

    Rice (Oryza sativa) is a highly Al-tolerant crop. Among other mechanisms, a higher expression of STAR1/STAR2 (sensitive to Al rhizotoxicity1/2) genes and of Nrat1 (NRAMP Aluminium Transporter 1), and ALS1 (Aluminium sensitive 1) can at least in part be responsible for the inducible Al tolerance in this species. Here we analysed the responses to Al in two contrasting rice varieties. All analysed toxicity/tolerance markers (root elongation, Evans blue, morin and haematoxylin staining) indicated higher Al-tolerance in variety Nipponbare, than in variety Modan. Nipponbare accumulated much less Al in the roots than Modan. Aluminium supply caused stronger expression of STAR1 in Nipponbare than in Modan. A distinctively higher increase of Al-induced abscisic acid (ABA) accumulation was found in the roots of Nipponbare than in Modan. Highest ABA levels were observed in Nipponbare after 48 h exposure to Al. This ABA peak was coincident in time with the highest expression level of STAR1. It is proposed that ABA may be required for cell wall remodulation facilitated by the enhanced UDP-glucose transport to the walls through STAR1/STAR2. Contrastingly, in the roots of Modan the expression of both Nrat1 coding for a plasma membrane Al-transporter and of ALS1 coding for a tonoplast-localized Al transporter was considerably enhanced. Moreover, Modan had a higher Al-induced expression of ASR1 a gene that has been proposed to code for a reactive oxygen scavenging protein. In conclusion, the Al-exclusion strategy of Nipponbare, at least in part mediated by STAR1 and probably regulated by ABA, provided better protection against Al toxicity than the accumulation and internal detoxification strategy of Modan mediated by Nrat1, ALS1 and ARS1. Copyright © 2015 Elsevier Inc. All rights reserved.

  9. Genetic diversity of high performance cultivars of upland and irrigated Brazilian rice.

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    Coelho, G R C; Brondani, C; Hoffmann, L V; Valdisser, P A M R; Borba, T C O; Mendonça, J A; Rodrigues, L A; de Menezes, I P P

    2017-09-21

    The objective of this study was to analyze the diversity and discrimination of high-performance Brazilian rice cultivars using microsatellite markers. Twenty-nine rice cultivars belonging to EMBRAPA Arroz e Feijão germplasm bank in Brazil were genotyped by 24 SSR markers to establish their structure and genetic discrimination. It was demonstrated that the analyzed germplasm of rice presents an expressive and significant genetic diversity with low heterogeneity among the cultivars. All 29 cultivars were differentiated genetically, and were organized into two groups related to their upland and irrigated cultivation systems. These groups showed a high genetic differentiation, with greater diversity within the group that includes the cultivars for irrigated system. The genotyping data of these cultivars, with the morphological e phenotypical data, are valuable information to be used by rice breeding programs to develop new improved cultivars.

  10. Improvement of west Sumatra black rice cultivar through mutation induction

    International Nuclear Information System (INIS)

    Benny Warman; Sobrizal; Irfan Suliansyah; Etti Swasti; Auzar Syarif

    2015-01-01

    Black rice cultivar is a local rice cultivar originating from East Pasaman, West Sumatera which has black endosperm, long growth duration and high plant height. The research was conducted from March 2012 until March 2013 with the objective of improvement the genetic of this black rice cultivar, especially related to the growth duration through mutation breeding. To get the optimum dose, the seeds of this cultivar were irradiated by gamma ray with doses of 0, 100, 200, 300, 400 and 500 Gy, respectively at Center of the Application of Isotopes and Radiation, National Nuclear Energy Agency (PAIR - BATAN), Jakarta. Base don the data of percentage of germination, plant height and root length in the seedling stage, and the percentage of grain sterility in M1 plants, it was obtained that the dose of 200-300 Gy is an effective dose in generating genetic diversity. It was agree with result of variability observations in M2 population derived from 200 Gy irradiated seeds, in which the extensive genetic diversities were observed in the variable of plant height, number of productive tillers and growth duration. From the selection in M2 population it was obtained 81 early maturing plants, with mutant frequency of 0.08 %. These selected early maturing mutants are very useful as initial plant materials in developing black rice leading mutant variety(s) in the future. (author)

  11. Alterations in growth, oxidative damage, and metal uptake of five aromatic rice cultivars under lead toxicity.

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    Ashraf, Umair; Hussain, Saddam; Anjum, Shakeel Ahmad; Abbas, Farhat; Tanveer, Mohsin; Noor, Mehmood Ali; Tang, Xiangru

    2017-06-01

    Lead (Pb) affects plant growth and its related physio-biochemical functions negatively. The present study investigated the responses of five different fragrant rice cultivars viz., Meixiangzhan (MXZ-2), Xiangyaxiangzhan (XYXZ), Guixiangzhan (GXZ), Basmati-385 (B-385), and Nongxiang-18 (NX-18) to four different Pb concentrations viz., 0, 400, 800 and 1200 μM. Results depicted that Pb toxicity significantly (P rice plants; nonetheless, a significant variation was found in the sensitivity of rice cultivars to Pb toxicity. Soluble sugars increased significantly only at 1200 μM in GXZ and 800 μM in B-385, whilst the maximum reductions in protein contents were observed at 1200 μM Pb for all rice cultivars. Proline contents were reduced for XYXZ and NX-18 at Pb1200 μM. Activities of superoxide dismutase (SOD), peroxidase (POD), catalase (CAT) and ascorbate peroxidase (APX) as well as reduced glutathione (GSH) and oxidized glutathione (GSSG) showed differential behavior among Pb treatments and rice cultivars. Among rice cultivars, GXZ showed better antioxidative defense system under Pb toxicity compared with all other cultivars. For all rice cultivars, the trend for Pb accumulation was recorded as: roots > stems > leaves. Furthermore, significant but negative correlations among Pb uptake and plant height (r = -0.79), tillers per plant (r = -0.91) and plant dry biomass (r = -0.81) were recorded for all rice cultivars whereas the values of translocation factor (TF) from stems to leaves were higher than roots to stems. In sum, Pb reduced the early growth and caused physio-biochemical changes in all rice cultivars, nonetheless, GXZ proved better able to tolerate Pb stress than all other rice cultivars under study. Copyright © 2017 Elsevier Masson SAS. All rights reserved.

  12. Cropping system diversification for food production in Mindanao rubber plantations: a rice cultivar mixture and rice intercropped with mungbean

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    Elazegui, Francisco; Duque, Jo-Anne Lynne Joy E.; Mundt, Christopher C.; Vera Cruz, Casiana M.

    2017-01-01

    Including food production in non-food systems, such as rubber plantations and biofuel or bioenergy crops, may contribute to household food security. We evaluated the potential for planting rice, mungbean, rice cultivar mixtures, and rice intercropped with mungbean in young rubber plantations in experiments in the Arakan Valley of Mindanao in the Philippines. Rice mixtures consisted of two- or three-row strips of cultivar Dinorado, a cultivar with higher value but lower yield, and high-yielding cultivar UPL Ri-5. Rice and mungbean intercropping treatments consisted of different combinations of two- or three-row strips of rice and mungbean. We used generalized linear mixed models to evaluate the yield of each crop alone and in the mixture or intercropping treatments. We also evaluated a land equivalent ratio for yield, along with weed biomass (where Ageratum conyzoides was particularly abundant), the severity of disease caused by Magnaporthe oryzae and Cochliobolus miyabeanus, and rice bug (Leptocorisa acuta) abundance. We analyzed the yield ranking of each cropping system across site-year combinations to determine mean relative performance and yield stability. When weighted by their relative economic value, UPL Ri-5 had the highest mean performance, but with decreasing performance in low-yielding environments. A rice and mungbean intercropping system had the second highest performance, tied with high-value Dinorado but without decreasing relative performance in low-yielding environments. Rice and mungbean intercropped with rubber have been adopted by farmers in the Arakan Valley. PMID:28194318

  13. THE EFFECT OF RICE CULTIVARS ON METHANE EMISSION FROM IRRIGATED RICE FIELD

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    P. Setyanto

    2016-10-01

    Full Text Available Rice plants have been reported to affect methane (CH4 emission from rice fields. The objectives of this study were to determine the effect of rice cultivars on CH4 emission from flooded rice and to develop crop management strategies with low emitting rice cultivars while sustaining high yield. The four rice cultivars studied were Memberamo, Cisadane, IR64, and Way Apoburu. The CH4 emissions were determined in the wet season of 2001/2002 (November-February using an automated closed chamber technique in an irrigated field condition. Farmyard manure at the rate of 5 t ha-1 was given to the plots to ensure carbon was not limited. Root weight, root length, biomass, and number of tillers were determined at 17, 36, and 57 days after transplanting (DAT. The results showed that the mean CH4 emission was highest in the plot planted with Cisadane (94.8 kg CH4 ha-1, and the lowest with IR64 (37.7 kg CH4 ha-1. The plots treated with emberamo and Way Apoburu resulted an intermediate CH4 emission at the average of 61.1 and 58.9 kg CH4 ha-1, respectively. There was no significant difference in yield between the cultivars tested. The yield of Memberamo, Cisadane, IR64, and Way Apoburu were 5.882, 5.764, 5.873 and 6.065 t ha-1, respectively. Statistical analysis showed that there were no significant differences in the root weight and root length among cultivars. However, Cisadane gave the highest dry matter weight (222 g hill-1 at 57 DAT compared to the other cultivars (175-190 g hill-1. Plant tillers did not show significant differences between the cultivars. Regression analysis showed that CH4 flux was significantly related with root weight, root length, aboveground biomass, and number of plant tillers. This finding shows that the use of selected cultivars, such as IR64, can potentially lower CH4 emission without scarifying yield.

  14. Intraspecific responses of 188 rice cultivars to enhanced UVB radiation

    International Nuclear Information System (INIS)

    Dai, Q.; Peng, A.; Chavez, A.Q.; Vergara, B.S.

    1994-01-01

    Phytotron studies were conducted to determine the intraspecific variation in sensitivity of rice (Oryza sativa L.) to enhanced UVB and to test the hypothesis that rice cultivars originating from regions with higher ambient UVB radiation are more tolerant to enhanced UVB. Out of the 188 rice cultivars (from various rice growing regions and ecosystems) tested, 143 had significantly reduced plant height, 52 had smaller leaf area, 61 had lower plant dry weight and 41 had less tiller number under elevated UVB radiation (13.0 kJ m −2 day −1 ) for 3 weeks. Six cultivars showed significant positive growth response to enhanced UVB radiation, although the mechanism is not clear at present. These six cultivars were from the summer rice crop of Bangladesh and from high elevation rice areas where prevailing UVB radiation is most likely to be greater. However, there was no correlation between the dry matter changes under enhanced UVB and the ambient UVB level at the origin of the cultivar across the 188 cultivars tested. Therefore, cultivars originating from regions with higher ambient UVB are not necessarily more tolerant to enhanced UVB radiation. (author)

  15. Cadmium accumulation in different rice cultivars and screening for pollution-safe cultivars of rice.

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    Yu, Hui; Wang, Junli; Fang, Wei; Yuan, Jiangang; Yang, Zhongyi

    2006-11-01

    Large areas of contaminated land are being used for agricultural production in some countries due to the high demand for food. To minimize the influx of pollutants to the human food chain through consumption of agricultural products, we propose the concept of pollution-safe cultivars (PSCs), i.e. cultivars whose edible parts accumulate a specific pollutant at a level low enough for safe consumption, even when grown in contaminated soil. We tested the feasibility of the PSC concept by growing 43 cultivars of paddy rice (Oryza sativa L., including 20 normal and 23 hybrid cultivars) under a high (75.69-77.55 mg kg(-1)) and a low (1.75-1.85 mg kg(-1)) cadmium (Cd) exposure. These pot experiments took place in the spring and summer of 2004. At the low level of Cd exposure, 30 out of the 43 tested cultivars were found to be Cd-PSCs. Grain Cd concentrations were highly correlated (price grain is genotype-dependent and that the selection of PSCs is possible, at least at a certain level of soil contamination. No Cd-PSCs were found under the high level of Cd exposure. Yield was enhanced in some cultivars and depressed in others in response to elevated soil Cd, indicating that farmers cannot rely on yield depression as an indicator of toxicity of the grains. It is therefore important and feasible to screen for PSCs and to establish PSC breeding programs to effectively and efficiently reduce the risk of human exposure to soil pollutants, such as Cd, through crop consumption.

  16. Elemental Composition of Two Rice Cultivars under Potentially Toxic an Aquept and Aquent

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    Adesola Olutayo OLALEYE

    2009-12-01

    Full Text Available Iron toxicity is a major nutrient disorder affecting rice production of wetland rice in the irrigated and rainfed ecosystem in West Africa sub-region. Little attention has been paid to evaluating nutrient contents of rice cultivars grown on such soils and their relationship to the iron toxicity scores, grain yield and dry matter yields. A pot experiment was conducted on two potentially Fe-toxic soils (Aeric Fluvaquent and Aeric Tropaquept. The experiment was a 2 x 2 x 4 factorial experiment with three replicates in arranged in a randomized fashion. The factors were two soil types, two rice cultivars (ITA 212 and tolerant (Suakoko 8 and four Fe 2+ levels (control, 1000, 3000 and 4000 mg L-1. The result showed that for both susceptible cultivar (ITA 212 and the relatively tolerant (Suakoko 8 cultivar, little or no differences were observed in their elemental composition with regards to micro and macro-nutrients. For the susceptible cultivar, results showed that none of the tissue nutrients significantly relates to iron toxicity scores (ITS, grain yield and dry matter yield on both soil types. However, for the tolerant cultivar, ITS was observed to be significantly related to tissue K and P contents on the two soil types respectively. Tissue Ca and Mg were observed to be significantly related to the dry matter yield (DMY on Aeric Tropquept. It could be concluded that for these rice cultivars grown on two potentially Fe-toxic soils, different tissue nutrients may trigger the manifestation of bronzing or yellowing symptoms of rice cultivars.

  17. Effect of Xanthan, Mono-di-Glyceride and Cultivar on Physical and Sensory Properties of Canned Rice During Storage

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    A. Nasirpour

    2014-08-01

    Full Text Available Ready-to-eat or canned products have an important place in urban life style. Rice is consumed by half of world population. Problems related to production of canned rice are the coherences of rice kernel, retrogradation of rice starch and physico-chemical changes of rice during storage. Main factors affecting physico-chemical properties of canned rice are rice cultivar, amylose and amylopectin content of kernels, precooking conditions, kernel composition and added stabilizers. In this study, effect of three cultivars, Basmati and two local cultivars, Tarom Mazandaran and Tarom Hashemi, also two types of stabilizers, Xanthan, Mono-di-glyceride, on sensory and physical properties of canned rice were studied. Type and level of stabilizers, cultivars and time had significant effect on texture of cooked rice. Initially during storage, Basmati had the highest firmness and Tarom Mazandaran and Tarom Hashemi had lower firmness. The results of texture analysis indicated that both stabilizers reduced firmness of cooked rice during storage. Adding xhanthan as stabilizer had higher effect on reducing of cooked rice firmness comparing to mono-di-glyceride. Result of color analysis showed that Basmati cultivar was most yellowish and Tarom Mazandaran indicated maximum lightness. Sensory analysis of samples indicated that Basmati had the best score on texture, appearance and acceptability and Tarom Hashemi had the best score on taste and flavor. Type of stabilizer had significant effect on taste and flavor of cooked rice.

  18. An Economic Risk Analysis of Weed Suppressive Rice Cultivars in Rice Production

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    Weeds are a major constraint to rice production. In the United States, most rice cultivars are not inherently weed-suppressive and require substantial herbicide inputs to achieve agronomic and economic viability. Intensive herbicide application in rice also has many potential drawbacks, resulting in...

  19. Genetic diversity analysis of rice cultivars from various origins using ...

    African Journals Online (AJOL)

    Genetic diversity is of paramount importance for the success of any plant breeding program. An experiment was conducted to assess the extent of genetic diversity and similarity of 24 rice cultivars from various origins using 29 simple sequence repeat (SSR) markers. A total of 144 alleles were detected at the 29 SSR primer ...

  20. Kinetic parameters of silicon uptake by rice cultivars

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    Priscila Oliveira Martins

    2012-02-01

    Full Text Available Silicon is considered an important chemical element for rice, because it can improve tolerance to biotic and abiotic stress. However, in many situations no positive effect of silicon was observed, probably due to genetic factors. The objective of this research was to monitor Si uptake kinetics and identify responses of rice cultivars in terms of Si uptake capacity and use. The experiment was carried out in a greenhouse of the São Paulo State University (UNESP, Brazil. The experiment was arranged in a completely randomized, factorial design with three replications. that consisted of two rice cultivars and two Si levels. Kinetic parameters (Vmax, Km, and Cmin, root morphology variables, dry matter yield, Si accumulation and levels in shoots and roots, uptake efficiency, utilization efficiency, and root/shoot ratio were evaluated. Higher Si concentrations in the nutrient solution did not increase rice dry matter. The development of the low-affinity silicon uptake system of the rice cultivar 'Caiapó' was better than of 'Maravilha'.

  1. Malaysian weedy rice shows its true stripes: wild Oryza and elite rice cultivars shape agricultural weed evolution in Southeast Asia.

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    Song, Beng-Kah; Chuah, Tse-Seng; Tam, Sheh May; Olsen, Kenneth M

    2014-10-01

    Weedy rice is a close relative of domesticated rice (Oryza sativa) that competes aggressively with the crop and limits rice productivity worldwide. Most genetic studies of weedy rice have focused on populations in regions where no reproductively compatible wild Oryza species occur (North America, Europe and northern Asia). Here, we examined the population genetics of weedy rice in Malaysia, where wild rice (O. rufipogon) can be found growing in close proximity to cultivated and weedy rice. Using 375 accessions and a combined analysis of 24 neutral SSR loci and two rice domestication genes (sh4, controlling seed shattering, and Bh4, controlling hull colour), we addressed the following questions: (i) What is the relationship of Malaysian weedy rice to domesticated and wild rice, and to weedy rice strains in the USA? (ii) To what extent does the presence of O. rufipogon influence the genetic and phenotypic diversity of Malaysian weeds? (iii) What do the distributions of sh4 and Bh4 alleles and associated phenotypes reveal about the origin and contemporary evolution of Malaysian weedy rice? Our results reveal the following: independent evolutionary origins for Malaysian weeds and US strains, despite their very close phenotypic resemblance; wild-to-weed gene flow in Malaysian weed populations, including apparent adaptive introgression of seed-shattering alleles; and a prominent role for modern Malaysian cultivars in the origin and recent proliferation of Malaysian weeds. These findings suggest that the genetic complexity and adaptability of weedy crop relatives can be profoundly influenced by proximity to reproductively compatible wild and domesticated populations. © 2014 John Wiley & Sons Ltd.

  2. Evaluation of antioxidant potential of Brazilian rice cultivars

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    Sylvio Vicentin Palombini

    2013-12-01

    Full Text Available This study quantified the fatty acids and evaluated the proximate composition, antioxidant activity (using the Quencher procedure, and total phenolic compound concentrations in Brazilian rice cultivars. The cultivars studied showed high amounts of unsaturated fatty acids, such as linoleic and oleic acid. The ratios of polyunsaturated and saturated fatty acids obtained were high. Regarding the antioxidant activity, the best results were found using the ABTS method and the worst in the DPPH assay. The results of the DPPH and FRAP assays showed the highest correlation. The antioxidant capacity results obtained were also much higher than those reported for other varieties worldwide. Therefore, the Quencher procedure is highly suitable for application in cereals such as rice, especially when combined with the ABTS radical capture method.

  3. The contrasting responses of soil microorganisms in two rice cultivars to elevated ground-level ozone

    International Nuclear Information System (INIS)

    Feng, Youzhi; Yu, Yongjie; Tang, Haoye; Zu, Qianhui; Zhu, Jianguo; Lin, Xiangui

    2015-01-01

    Although elevated ground-level O 3 has a species–specific impact on plant growth, the differences in soil biota responses to O 3 pollution among rice cultivars are rarely reported. Using O 3 Free-Air Concentration Enrichment, the responses of the rhizospheric bacterial communities in the O 3 -tolerant (YD6) and the O 3 -sensitive (IIY084) rice cultivars to O 3 pollution and their differences were assessed by pyrosequencing at rice tillering and anthesis stages. Elevated ground-level O 3 negatively influenced the bacterial community in cultivar YD6 at both rice growth stages by decreasing the bacterial phylogenetic diversities and response ratios. In contrast, in cultivar IIY084, the bacterial community responded positively at the rice tillering stage under O 3 pollution. However, several keystone bacterial guilds were consistently negatively affected by O 3 pollution in two rice cultivars. These findings indicate that continuously O 3 pollution would negatively influence rice agroecosystem and the crop cultivar is important in determining the soil biota responses to elevated O 3 . - Highlights: • We investigated the soil biota in two rice cultivars in presence of elevated O 3 . • The contrasting responses of soil biota were found between two rice cultivars. • Some keystone bacterial guilds were consistently negatively affected by O 3 pollution. • The crop cultivar is important in determining soil biota responses to elevated O 3 . - The crop cultivar is important in determining the soil biota responses to elevated O 3

  4. Leaf gas exchange and yield of three upland rice cultivars

    Directory of Open Access Journals (Sweden)

    Rita de Cássia Félix Alvarez

    2015-03-01

    Full Text Available Studies of physiological parameters associated with crop performance and growth in different groups of upland rice (Oryza sativa L. may support plant breeding programs. We evaluated the role of gas exchange rates and dry matter accumulation (DMA as traits responsible for yields in a traditional (cv. ‘Caiapó’, intermediate (cv. ‘Primavera’ and modern (cv. ‘Maravilha’ upland rice cultivars. Leaf gas exchange rates, DMA, leaf area index (LAI, harvest indexes (HI and yield components were measured on these genotypes in the field, under sprinkler irrigation. Panicles per m2 and DMA at flowering (FL and heading, as well as CO2 assimilation rates (A were similar across these cultivars. The highest yield was found in ‘Primavera’, which may be explained by (i a two-fold higher HI compared to the other cultivars, (ii greater rates of DMA during spikelet formation and grain-filling, as well as (iii a slow natural decrease of A in this cultivar, at the end of the season (between FL and maturation.

  5. Mechanisms of UVB-resistance in rice: Cultivar differences in the sensitivity to UVB radiation in rice

    International Nuclear Information System (INIS)

    Hidema, J.

    2001-01-01

    In a study on the sensitivity to UVB radiation of rice cultivars of 5 Asian rice ecotypes, results showed that the rice cultivars widely varied in UVB sensitivity; among the Japanese rice cultivars, Sasanishiki was more resistant to UVB, while Norin 1 was less resistant; UV-sensitive Norin 1 was deficient in photorepair of cyclobutane pyrimidine dimers (UV-induced DNA damage), and the sensitivity to UVB radiation significantly correlated with deficient CPD photorepair; and that this deficiency in Norin 1 resulted from a functionally altered photolyase. The results suggest that photorepair capacity is a principal factor in determining UVB sensitivity in rice. The effects of supplemental UVB radiation on the growth and yield of Japanese rice cultivars under field conditions were also studied in Japan since 1993. The results indicate that supplemental UVB radiation had inhibitory effects on the growth and yield of rice. Furthermore, grain size was smaller with supplemental UVB radiation

  6. Genome-wide indel markers shared by diverse Asian rice cultivars compared to Japanese rice cultivar ?Koshihikari?

    OpenAIRE

    Yonemaru, Jun-ichi; Choi, Sun Hee; Sakai, Hiroaki; Ando, Tsuyu; Shomura, Ayahiko; Yano, Masahiro; Wu, Jianzhong; Fukuoka, Shuichi

    2015-01-01

    Insertion-deletion (indel) polymorphisms, such as simple sequence repeats, have been widely used as DNA markers to identify QTLs and genes and to facilitate rice breeding. Recently, next-generation sequencing has produced deep sequences that allow genome-wide detection of indels. These polymorphisms can potentially be used to develop high-accuracy polymerase chain reaction (PCR)-based markers. Here, re-sequencing of 5 indica, 2 aus, and 3 tropical japonica cultivars and Japanese elite cultiva...

  7. Harvest season and head rice yield of upland rice cultivars submitted to parboiling

    Directory of Open Access Journals (Sweden)

    Diva Mendonça Garcia

    2012-11-01

    Full Text Available Normal 0 21 false false false PT-BR X-NONE X-NONE This work aimed to evaluate the effects of parboiling on the yield of upland rice cultivars harvested at different times. The cultivars were BRS Primavera and BRS Sertaneja, harvested at 30 and 47 days after flowering (DAF. For parboiling, samples were soaked in water bath at 65 °C in grain: water ratio of 1:1.6 in order to reach 25% and 30% moisture, and then were autoclaved for 10 minutes at 120 °C and 1.1 kg/cm2 of pressure. After drying up to 13% moisture in a greenhouse with forced air at 40 °C, samples were benefited, followed by separation using the trieur equipment and weighing to obtain the head rice yield. The results showed a higher yield for head rice harvested at 30 DAF than at 47 DAF (BRS Primavera 63.2 and 38.7%; BRS Sertaneja 68.5 and 55.7%, respectively. Parboiling increased the head rice yield, regardless of harvest season, but partly reflected the potential of the cultivar origin: BRS Primavera 70.06%, BRS Sertaneja 74.94%. It is concluded that the harvest season is one of the factors that most influence the quality of industrial rice and the effect of parboiling also depends on the potential of the material source.

  8. Root Morphology Was Improved in a Late-Stage Vigor Super Rice Cultivar.

    Science.gov (United States)

    Huang, Min; Chen, Jiana; Cao, Fangbo; Jiang, Ligeng; Zou, Yingbin

    2015-01-01

    This study aimed to test the hypothesis that root morphology might be improved and consequently contributing to superior post-heading shoot growth and grain yield in late-stage vigor super rice. A pot experiment was carried out to compare yield attributes, shoot growth and physiological properties and root morphological traits between a late-stage vigor super rice cultivar (Y-liangyou 087) and an elite rice cultivar (Teyou 838). Grain yield and total shoot biomass were 7-9% higher in Y-liangyou 087 than in Teyou 838. Y-liangyou 087 had 60-64% higher post-heading shoot growth rate and biomass production than Teyou 838. Average relative chlorophyll concentration and net photosynthetic rate in flag leaves were 7-11% higher in Y-liangyou 087 than in Teyou 838 during heading to 25 days after heading. Y-liangyou 087 had 41% higher post-heading shoot N uptake but 17-25% lower root biomass and root-shoot ratio at heading and maturity than Teyou 838. Specific root length and length and surface area of fine roots were higher in Y-liangyou 087 than in Teyou 838 at heading and maturity by more than 15%. These results indicated that root-shoot relationships were well balanced during post-heading phase in the late-stage vigor super rice cultivar Y-liangyou 087 by improving root morphology including avoiding a too great root biomass and developing a large fine root system.

  9. Genome-wide DNA polymorphisms in Kavuni, a traditional rice cultivar with nutritional and therapeutic properties.

    Science.gov (United States)

    Rathinasabapathi, Pasupathi; Purushothaman, Natarajan; Parani, Madasamy

    2016-05-01

    Although rice genome was sequenced in the year 2002, efforts in resequencing the large number of available accessions, landraces, traditional cultivars, and improved varieties of this important food crop are limited. We have initiated resequencing of the traditional cultivars from India. Kavuni is an important traditional rice cultivar from South India that attracts premium price for its nutritional and therapeutic properties. Whole-genome sequencing of Kavuni using Illumina platform and SNPs analysis using Nipponbare reference genome identified 1 150 711 SNPs of which 377 381 SNPs were located in the genic regions. Non-synonymous SNPs (62 708) were distributed in 19 251 genes, and their number varied between 1 and 115 per gene. Large-effect DNA polymorphisms (7769) were present in 3475 genes. Pathway mapping of these polymorphisms revealed the involvement of genes related to carbohydrate metabolism, translation, protein-folding, and cell death. Analysis of the starch biosynthesis related genes revealed that the granule-bound starch synthase I gene had T/G SNPs at the first intron/exon junction and a two-nucleotide combination, which were reported to favour high amylose content and low glycemic index. The present study provided a valuable genomics resource to study the rice varieties with nutritional and medicinal properties.

  10. The Role of Node Restriction on Cadmium Accumulation in the Brown Rice of 12 Chinese Rice (Oryza sativa L.) Cultivars.

    Science.gov (United States)

    Huang, Gaoxiang; Ding, Changfeng; Guo, Fuyu; Li, Xiaogang; Zhou, Zhigao; Zhang, Taolin; Wang, Xingxiang

    2017-11-29

    For selection or breeding of rice (Oryza sativa L.) cultivars with low Cd affinity, the role of node Cd restriction on Cd accumulation in brown rice was studied. A pot experiment was conducted to investigate the concentration of Cd in different sections of 12 Chinese rice cultivars. The results indicated that the Cd accumulation in the brown rice was mainly dependent on the root or shoot Cd concentration. Among the cultivars with nearly equal shoot Cd concentrations, Cd accumulation in brown rice was mainly dependent on the transport of Cd in the shoot. However, the Cd transport in the shoot was significantly restricted by the nodes, especially by the first node. Furthermore, the area of the diffuse vascular bundle in the junctional region of the flag leaf and the first node was a key contributor to the variations in Cd restriction by the nodes.

  11. Effects of Salt Stress on Germination and Early Seedling Growth of Some Kenyan Rice Cultivars

    International Nuclear Information System (INIS)

    Ochieng, C.A.; Onkware, A.O.

    1999-01-01

    Four rice cultivars (Basmati-217, BW-196, Sindano and Ita-310) were subjected to increasing substrate salinity (0-1.5 Sm -1 ECe), under both laboratory and soil experiments. The salt stress significantly (P -1 ECe) completely inhibited germination in potted soil, but not petri dish tests in the laboratory.It was concluded that the three rice cultivars are susceptible to even mild substrate salinity, and cannot be relied upon for cultivation in saline soils. There is a need to assess the response many of the rice cvv for resistance to salt stress, and, if possible isolate and develop high yielding, resistant cultivars

  12. Arsenic accumulation and phosphorus status in two rice (Oryza sativa L.) cultivars surveyed from fields in South China

    International Nuclear Information System (INIS)

    Lu Ying; Dong, Fei; Deacon, Claire; Chen Huojun; Raab, Andrea; Meharg, Andrew A.

    2010-01-01

    The consumption of paddy rice (Oryza sativa L.) is a major inorganic arsenic exposure pathway in S.E. Asia. A multi-location survey was undertaken in Guangdong Province, South China to assess arsenic accumulation and speciation in 2 rice cultivars, one an Indica and the other a hybrid Indica. The results showed that arsenic concentrations in rice tissue increased in the order grain < husk < straw < root. Rice grain arsenic content of 2 rice cultivars was significant different and correlated with phosphorus concentration and molar ratio of P/As in shoot, being higher for the Indica cultivar than for the hybrid Indica, which suggests altering shoot phosphorus status as a promising route for breeding rice cultivars with reduced grain arsenic. Speciation of grain arsenic, performed using HPLC-ICP-MS, identified inorganic arsenic as the dominant arsenic species present in the rice grain. - Altering rice shoot phosphorus status is a promising route for breeding rice cultivars with reduced grain arsenic.

  13. Plant type improvement of indigenous rice cultivars through induced mutations

    International Nuclear Information System (INIS)

    Kihupi, A.

    1997-01-01

    A high yielding, locally adapted cultivar 'Afaa Mwanza 1/159' of rice (Oryza sativa L.) which is tall and late in maturity, was irradiated with gamma rays at doses of 170, 210 and 250 Gy to shorten plant height and time of maturity. Twelve mutants were selected, and evaluated for yield performance in field trials from M 6 to M 9 generations. All the mutants were shorter in plant height, and gave higher mean yield than the parent. Correlation coefficient analysis showed that the number of productive tillers, number of panicles per square meter and grain filling in the panicle were important characters which influenced yield. On the other hand, panicle length had negative influence on yield. Cv. 'Supa India' and 'Salama' were also irradiated with doses of 170, 210, 240 Gy gamma rays. Analysis of M 2 populations of these cultivars indicated that mutagenesis created a lot of variation in plant height, maturity, spikelet fertility and panicle length. The induced variation shall be useful in selecting desired plant types. (author). 16 refs, 12 tabs

  14. Plant type improvement of indigenous rice cultivars through induced mutations

    Energy Technology Data Exchange (ETDEWEB)

    Kihupi, A [Department of Crop Science and Production, Sokoine Univ. of Agriculture, Morogoro (Tanzania)

    1997-07-01

    A high yielding, locally adapted cultivar `Afaa Mwanza 1/159` of rice (Oryza sativa L.) which is tall and late in maturity, was irradiated with gamma rays at doses of 170, 210 and 250 Gy to shorten plant height and time of maturity. Twelve mutants were selected, and evaluated for yield performance in field trials from M{sub 6} to M{sub 9} generations. All the mutants were shorter in plant height, and gave higher mean yield than the parent. Correlation coefficient analysis showed that the number of productive tillers, number of panicles per square meter and grain filling in the panicle were important characters which influenced yield. On the other hand, panicle length had negative influence on yield. Cv. `Supa India` and `Salama` were also irradiated with doses of 170, 210, 240 Gy gamma rays. Analysis of M{sub 2} populations of these cultivars indicated that mutagenesis created a lot of variation in plant height, maturity, spikelet fertility and panicle length. The induced variation shall be useful in selecting desired plant types. (author). 16 refs, 12 tabs.

  15. Influência de cultivares de arroz e épocas da adubação nitrogenada nas relações de interferência da cultura com cultivar simulador de infestação de arroz-vermelho Influence of rice cultivars and nitrogen fertilizer timing on the interference relationships between the crop and cultivar simulating red rice infestation

    Directory of Open Access Journals (Sweden)

    D. Agostinetto

    2004-06-01

    Full Text Available O objetivo deste trabalho foi avaliar os efeitos de cultivares de arroz irrigado e de épocas de adubação nitrogenada durante o ciclo da cultura sobre a habilidade competitiva do cereal em relação ao cultivar EEA 406, usado como simulador da planta daninha arrozvermelho. Para isso, conduziu-se experimento em campo, na estação de crescimento 2001/02. Os tratamentos, dispostos em esquema fatorial, constaram de cultivares de arroz (BRS-38 Ligeirinho, IRGA 417 e BR-IRGA 409, épocas de aplicação do nitrogênio (N (100% do N na semeadura, 50% do N na semeadura mais 50% no início da diferenciação da panícula (IDP, 100% no IDP e testemunha sem o adubo e populações do cultivar simulador do arroz-vermelho. Para relacionar as perdas de produtividade de grãos de arroz com populações do cultivar simulador, utilizou-se o modelo de regressão da hipérbole retangular, ajustado de modo independente para os fatores estudados. Verificou-se que a época de aplicação do N influenciou na habilidade competitiva dos cultivares de arroz. Cultivares de ciclo muito curto e curto apresentaram maior habilidade competitiva com o cultivar simulador, quando a adubação foi realizada na semeadura, enquanto o cultivar de ciclo médio se beneficiou do fracionamento da adubação na semeadura e no IDP.The objective of this study was to evaluate the effects of flooded rice cultivars and timings of nitrogen fertilizer application during the crop cycle on the competitive ability of this cereal in relation to EEA 406 cultivar, used as a mimicker of red rice. Thus, a field experiment was carried out during the 2001/02 growing season. The treatments were arranged in a factorial design,comprising the rice cultivars (BRS-38 Ligeirinho, IRGA 417, and BR-IRGA 409, nitrogen (N application timings (100% at sowing, 50% at sowing plus 50% at the beginning of panicle differentiation (BPD, 100% at BPD, and check without fertilizer, and densities of the mimicker cultivar. In

  16. Leaf density explains variation in leaf mass per area in rice between cultivars and nitrogen treatments.

    Science.gov (United States)

    Xiong, Dongliang; Wang, Dan; Liu, Xi; Peng, Shaobing; Huang, Jianliang; Li, Yong

    2016-05-01

    Leaf mass per area (LMA) is an important leaf trait; however, correlations between LMA and leaf anatomical features and photosynthesis have not been fully investigated, especially in cereal crops. The objectives of this study were (a) to investigate the correlations between LMA and leaf anatomical traits; and (b) to clarify the response of LMA to nitrogen supply and its effect on photosynthetic nitrogen use efficiency (PNUE). In the present study, 11 rice varieties were pot grown under sufficient nitrogen (SN) conditions, and four selected rice cultivars were grown under low nitrogen (LN) conditions. Leaf anatomical traits, gas exchange and leaf N content were measured. There was large variation in LMA across selected rice varieties. Regression analysis showed that the variation in LMA was more closely related to leaf density (LD) than to leaf thickness (LT). LMA was positively related to the percentage of mesophyll tissue area (%mesophyll), negatively related to the percentage of epidermis tissue area (%epidermis) and unrelated to the percentage of vascular tissue area (%vascular). The response of LMA to N supplementation was dependent on the variety and was also mainly determined by the response of LD to N. Compared with SN, photosynthesis was significantly decreased under LN, while PNUE was increased. The increase in PNUE was more critical in rice cultivars with a higher LMA under SN supply. Leaf density is the major cause of the variation in LMA across rice varieties and N treatments, and an increase in LMA under high N conditions would aggravate the decrease in PNUE. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  17. Root Morphology Was Improved in a Late-Stage Vigor Super Rice Cultivar.

    Directory of Open Access Journals (Sweden)

    Min Huang

    Full Text Available This study aimed to test the hypothesis that root morphology might be improved and consequently contributing to superior post-heading shoot growth and grain yield in late-stage vigor super rice. A pot experiment was carried out to compare yield attributes, shoot growth and physiological properties and root morphological traits between a late-stage vigor super rice cultivar (Y-liangyou 087 and an elite rice cultivar (Teyou 838. Grain yield and total shoot biomass were 7-9% higher in Y-liangyou 087 than in Teyou 838. Y-liangyou 087 had 60-64% higher post-heading shoot growth rate and biomass production than Teyou 838. Average relative chlorophyll concentration and net photosynthetic rate in flag leaves were 7-11% higher in Y-liangyou 087 than in Teyou 838 during heading to 25 days after heading. Y-liangyou 087 had 41% higher post-heading shoot N uptake but 17-25% lower root biomass and root-shoot ratio at heading and maturity than Teyou 838. Specific root length and length and surface area of fine roots were higher in Y-liangyou 087 than in Teyou 838 at heading and maturity by more than 15%. These results indicated that root-shoot relationships were well balanced during post-heading phase in the late-stage vigor super rice cultivar Y-liangyou 087 by improving root morphology including avoiding a too great root biomass and developing a large fine root system.

  18. In-vitro culture performance of rice cultivars

    International Nuclear Information System (INIS)

    Oard, J.H.; Rutger, J.N.

    1989-01-01

    Full text: Four California rice varieties (L-202, S-201, M-202 and Calmochi 101) and one Texas rice (Lemont) were tested for embryogenic calli produced from mature seeds. Of these varieties S-201, M-202 and Calmochi 101 derived from mutant crosses as follows (mutant parent underlined). S-201 (Calrose 76 x Cs-M3) x S6; M-202 (IR8 x Cs-M3) x (10-7 x M-101); Calmochi 101 Tatsumi mochi x (M7 x S6). S-201 was the only cultivar that produced many shoots from virtually all portions of the embryogenic callus. M-202 produced the highest no. of shoots at the upper level of hormone (BAP). Regeneration of Calmochi 101 was rather poor. The frequency of albino shoots was also different for the varieties tested: 0.027 for L-202; 0.00 for Calmochi 101; 0.016 for S-201; 0.045 for Lemont; 0.037 for M-202. Albino shoots were found only with 0.1 mg 1 -1 BAP in the regeneration medium, except for Lemont which produced albinos without cytokinin. (author)

  19. Mapping and pyramiding of two major genes for resistance to the brown planthopper (Nilaparvata lugens [St?l]) in the rice cultivar ADR52

    OpenAIRE

    Myint, Khin Khin Marlar; Fujita, Daisuke; Matsumura, Masaya; Sonoda, Tomohiro; Yoshimura, Atsushi; Yasui, Hideshi

    2011-01-01

    The brown planthopper (BPH), Nilaparvata lugens (St?l), is one of the most serious and destructive pests of rice, and can be found throughout the rice-growing areas of Asia. To date, more than 24 major BPH-resistance genes have been reported in several Oryza sativa ssp. indica cultivars and wild relatives. Here, we report the genetic basis of the high level of BPH resistance derived from an Indian rice cultivar, ADR52, which was previously identified as resistant to the whitebacked planthoppe...

  20. Variation in Yield and Physicochemical Quality Traits among Mutants of Japonica Rice Cultivar Wuyujing 3

    OpenAIRE

    Abacar, Jose Daniel; Zhao-miao, Lin; Xin-cheng, Zhang; Cheng-qiang, Ding; She, Tang; Zheng-hui, Liu; Shao-hua, Wang; Yan-feng, Ding

    2016-01-01

    To select elite germplasms, 112 mutants derived from japonica rice cultivar Wuyujing 3 were evaluated. The yield components such as panicle number per square meter, grain number per panicle, and grain weight were measured. The quality traits such as percentage of chalky grains (PCG), brown rice yield (BRY), milled rice yield (MRY), degree of milling (DM), amylose content (AC), protein content (PC), and relationships among traits were inverstigated. Results showed that grain yield ranged from ...

  1. [Introduction of upland rice cultivars to eastern Keerqin sandy land and their biological characteristics].

    Science.gov (United States)

    Zeng, Dehui; Zhang, Chunxing; Wang, Guirong; Fan, Zhiping

    2004-10-01

    Developing water-saving rice cultivation is one important strategy for food security in China. This paper reported the experimental results of introducing six upland rice cultivars to eastern Keerqin sandy land. The field experiment results showed that under the condition of 60% water-saving, the yield of cultivars XH 95-13 and XH 95-13-6 was 10.2% and 5.5% higher than the control, respectively, while other four cultivars decreased by 6.7%-18.6%. Economically, all the cultivars except JP 121 had a higher income than the control, and the profitability of cultivars XH 95-13 and XH 95-13-6 reached 24.0% and 19.3%, respectively. The water productivity of all the six cultivars was over 0.566 kg x m(-3), increased by 59.89%-116.38%. Pot experiment showed that 12.1%-16.3% of soil moisture in 0-15 cm layer was beneficial to the growth of upland rice. In eastern Keerqin sandy land, effective tillers occurred before July 18. In brief, upland rice production could be extensively applicable in eastern Keerqin sandy land to gradually alternate the traditional lowland rice cultivation with continuous flooding, and save much underground water.

  2. Analysis of nucleotide diversity among alleles of the major bacterial blight resistance gene Xa27 in cultivars of rice (Oryza sativa) and its wild relatives.

    Science.gov (United States)

    Bimolata, Waikhom; Kumar, Anirudh; Sundaram, Raman Meenakshi; Laha, Gouri Shankar; Qureshi, Insaf Ahmed; Reddy, Gajjala Ashok; Ghazi, Irfan Ahmad

    2013-08-01

    Xa27 is one of the important R-genes, effective against bacterial blight disease of rice caused by Xanthomonas oryzae pv. oryzae (Xoo). Using natural population of Oryza, we analyzed the sequence variation in the functionally important domains of Xa27 across the Oryza species. DNA sequences of Xa27 alleles from 27 rice accessions revealed higher nucleotide diversity among the reported R-genes of rice. Sequence polymorphism analysis revealed synonymous and non-synonymous mutations in addition to a number of InDels in non-coding regions of the gene. High sequence variation was observed in the promoter region including the 5'UTR with 'π' value 0.00916 and 'θ w ' = 0.01785. Comparative analysis of the identified Xa27 alleles with that of IRBB27 and IR24 indicated the operation of both positive selection (Ka/Ks > 1) and neutral selection (Ka/Ks ≈ 0). The genetic distances of alleles of the gene from Oryza nivara were nearer to IRBB27 as compared to IR24. We also found the presence of conserved and null UPT (upregulated by transcriptional activator) box in the isolated alleles. Considerable amino acid polymorphism was localized in the trans-membrane domain for which the functional significance is yet to be elucidated. However, the absence of functional UPT box in all the alleles except IRBB27 suggests the maintenance of single resistant allele throughout the natural population.

  3. Performance of super hybrid rice cultivars grown under no-tillage and direct seeding

    Directory of Open Access Journals (Sweden)

    Min Huang

    2012-04-01

    Full Text Available Good progress has been made in the super hybrid rice (Oryza sativa L. breeding in China. However, rice yield not only depends on the genetic characteristics but also on the agronomic practices. No-tillage and direct seeding (NTDS is a simplified cultivation technology that greatly simplifies both land preparation and crop establishment. Aiming to determine the grain yield performance of super hybrid rice under NTDS and to identify critical factors that determine grain yield, field experiments were conducted in Nanxian, Hunan Province, China in 2009 and 2010. Two super hybrid cultivars, Liangyoupeijiu and Y-liangyou 1, were grown under conventional tillage and transplanting (CTTP and NTDS. Grain yield, yield components, biomass production, crop growth rate and biomass accumulation during sowing to heading (HD and HD to maturity were measured for each cultivar. There was no difference in grain yield under NTDS and CTTP. However, grain yield differed with cultivar and year. Y-liangyou 1 produced 4 % higher grain yield than Liangyoupeijiu in 2009, whereas in 2010 both cultivars yielded similarly. Grain yields of both cultivars were higher in 2009 than in 2010. Higher grain yield of Y-liangyou 1 in 2009 was associated with higher spikelet filling (spikelet filling percentage and grain weight, which resulted from higher biomass production. Crop growth rate after HD was critical for biomass production by the super hybrid rice. We suggest that increasing the crop growth rate after HD is an effective approach to increase grain yield of super hybrid rice under NTDS.

  4. Recovery of nitrogen fertilizer by traditional and improved rice cultivars in the Bhutan Highlands

    DEFF Research Database (Denmark)

    Ghaley, Bhim Bahadur; Jensen, Henning Høgh; Christiansen, Jørgen Lindskrog

    2010-01-01

    The recovery of soil derived nitrogen (NDFS) and fertilizer N (NDFF) was investigated in highland rice (Oryza sativa L.) fields in Bhutan, characterized by high inputs of farmyard manure (FYM). The effect of 60 kg N ha-1 (60 N) applied in two splits to a traditional and an improved cultivar......% respectively, with no difference between cultivars, but REN decreased with increasing FYM inputs. Fertilizer N recommendations that allow for previous FYM inputs combined with applications timed to coincide with maximum crop demand (45 DAT), and the use of improved cultivars, could enhance N fertilizer......, popular among the farmers, was investigated using the 15N isotope dilution technique. No differences were found between cultivars with respect to the uptake of NDFS and NDFF, but the improved cultivar yielded 27% more (P¿=¿0.05) grain compared with the traditional cultivar. This was largely due to its...

  5. Use of seed protein polymorphism for discrimination of improvement level and geographic origin of upland rice cultivars

    Directory of Open Access Journals (Sweden)

    Ricardo Montalván

    1998-12-01

    Full Text Available Grain proteins from 58 Brazilian and nine Japanese upland rice cultivars (Oryza sativa L. were electrophoretically separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE. Densitometric scanning of the electrophoretic profiles permitted the estimation of the relative concentration of 16 protein fractions, which were used as variables for the calculation of Fisher's canonical discriminating functions. Significant differences between mean values of protein fractions were useful in distinguishing Brazilian and Japanese cultivars, as well as improved and non-improved Brazilian rice cultivars in scattered plots. Electrophoretically detectable protein polymorphism in rice grain can indicate geographic origin as well as breeding improvement level of a cultivar. Improved cultivars were those released by plant breeding institutes.Proteínas de grão de 58 genótipos de arroz brasileiro e nove japoneses foram separadas por meio de eletroforese (SDS-PAGE. A observação densitométrica dos perfis eletroforéticos permitiu avaliar as concentrações relativas de 16 frações protéicas que foram usadas como variáveis para a estimativa de funções discriminantes de Fisher. Diferenças significantes foram encontradas entre as frações protéicas dos grupos brasileiros e japoneses, assim como entre os genótipos melhorados e não melhorados. O polimorfismo protéico detectável eletroforetica-mente nos grãos de arroz pode indicar a origem geográfica e o nível de melhoramento dos cultivares.

  6. Biochemical and physiological characterization of three rice cultivars under different daytime temperature conditions

    Directory of Open Access Journals (Sweden)

    Alefsi David Sanchez-Reinoso

    2014-12-01

    Full Text Available Heat stress due to high daytime temperatures is one of the main limiting factors in rice (Oryza sativa L. yield in Colombia. Thus, the objective of the present research was to analyze the effect of three different daytime temperatures (25, 35, and 40 °C on the physiological responses of three Colombian rice cultivars (F60, F733, and F473, thereby contributing to the knowledge of rice acclimation mechanisms. For 10 d, eight plants of each of the three cultivars were subjected daily to 5 h periods of 35 and 40 °C. The control treatment corresponded to normal growth conditions (25 °C. Thermal stress was assessed based on a series of physiological and biochemical parameters. The 35 °C treatment produced photosynthetic and respiratory differences in all three cultivars. At 40 °C, 'F60' displayed the lowest photosynthetic rate and the highest respiratory rate. Although this cultivar experienced particularly strong electrolyte leakage and changes in proline when subjected to the high-temperature treatments, similar trends were observed in 'F733' and 'F473'. At 40 °C, the concentration of malondialdehyde (MDA was lower in 'F473' than in the other cultivars. These results may explain the poor agronomic performance of 'F60' in the field under daytime heat stress. The methodologies employed in the present work may be useful in Colombian rice breeding programs, particularly for the selection of heat-tolerant breeding stocks.

  7. Boron application improves yield of rice cultivars under high temperature stress during vegetative and reproductive stages.

    Science.gov (United States)

    Shahid, Mohammad; Nayak, Amaresh Kumar; Tripathi, Rahul; Katara, Jawahar Lal; Bihari, Priyanka; Lal, Banwari; Gautam, Priyanka

    2018-04-12

    It is reported that high temperatures (HT) would cause a marked decrease in world rice production. In tropical regions, high temperatures are a constraint to rice production and the most damaging effect is on spikelet sterility. Boron (B) plays a very important role in the cell wall formation, sugar translocation, and reproduction of the rice crop and could play an important role in alleviating high temperature stress. A pot culture experiment was conducted to study the effect of B application on high temperature tolerance of rice cultivars in B-deficient soil. The treatments comprised of four boron application treatments viz. control (B0), soil application of 1 kg B ha -1 (B1), soil application of 2 kg B ha -1 (B2), and foliar spray of 0.2% B (Bfs); three rice cultivars viz. Annapurna (HT stress tolerant), Naveen, and Shatabdi (both HT stress susceptible); and three temperature regimes viz. ambient (AT), HT at vegetative stage (HTV), and HT at reproductive stage (HTR). The results revealed that high temperature stress during vegetative or flowering stage reduced grain yield of rice cultivars mainly because of low pollen viability and spikelet fertility. The effects of high temperature on the spikelet fertility and grain filling varied among cultivars and the growth stages of plant when exposed to the high temperature stress. Under high temperature stress, the tolerant cultivar displays higher cell membrane stability, less accumulation of osmolytes, more antioxidant enzyme activities, and higher pollen viability and spikelet fertility than the susceptible cultivars. In the present work, soil application of boron was effective in reducing the negative effects of high temperature both at vegetative and reproductive stages. Application of B results into higher grain yield under both ambient and high temperature condition over control for all the three cultivars; however, more increase was observed for the susceptible cultivar over the tolerant one. The results

  8. Boron application improves yield of rice cultivars under high temperature stress during vegetative and reproductive stages

    Science.gov (United States)

    Shahid, Mohammad; Nayak, Amaresh Kumar; Tripathi, Rahul; Katara, Jawahar Lal; Bihari, Priyanka; Lal, Banwari; Gautam, Priyanka

    2018-04-01

    It is reported that high temperatures (HT) would cause a marked decrease in world rice production. In tropical regions, high temperatures are a constraint to rice production and the most damaging effect is on spikelet sterility. Boron (B) plays a very important role in the cell wall formation, sugar translocation, and reproduction of the rice crop and could play an important role in alleviating high temperature stress. A pot culture experiment was conducted to study the effect of B application on high temperature tolerance of rice cultivars in B-deficient soil. The treatments comprised of four boron application treatments viz. control (B0), soil application of 1 kg B ha-1 (B1), soil application of 2 kg B ha-1 (B2), and foliar spray of 0.2% B (Bfs); three rice cultivars viz. Annapurna (HT stress tolerant), Naveen, and Shatabdi (both HT stress susceptible); and three temperature regimes viz. ambient (AT), HT at vegetative stage (HTV), and HT at reproductive stage (HTR). The results revealed that high temperature stress during vegetative or flowering stage reduced grain yield of rice cultivars mainly because of low pollen viability and spikelet fertility. The effects of high temperature on the spikelet fertility and grain filling varied among cultivars and the growth stages of plant when exposed to the high temperature stress. Under high temperature stress, the tolerant cultivar displays higher cell membrane stability, less accumulation of osmolytes, more antioxidant enzyme activities, and higher pollen viability and spikelet fertility than the susceptible cultivars. In the present work, soil application of boron was effective in reducing the negative effects of high temperature both at vegetative and reproductive stages. Application of B results into higher grain yield under both ambient and high temperature condition over control for all the three cultivars; however, more increase was observed for the susceptible cultivar over the tolerant one. The results suggest

  9. Genetic dissection of grain traits in Yamadanishiki, an excellent sake-brewing rice cultivar.

    Science.gov (United States)

    Okada, Satoshi; Suehiro, Miki; Ebana, Kaworu; Hori, Kiyosumi; Onogi, Akio; Iwata, Hiroyoshi; Yamasaki, Masanori

    2017-12-01

    The grain traits of Yamadanishiki, an excellent sake-brewing rice cultivar in Japan, are governed by multiple QTLs, namely, a total of 42 QTLs including six major QTLs. Japanese rice wine (sake) is produced using brewing rice (Oryza sativa L.) that carries traits desirable for sake-brewing, such as a larger grain size and higher white-core expression rate (WCE) compared to cooking rice cultivars. However, the genetic basis for these traits in brewing rice cultivars is still unclear. We performed analyses of quantitative trait locus (QTL) of grain and days to heading over 3 years on populations derived from crosses between Koshihikari, a cooking rice, and Yamadanishiki, an excellent sake-brewing rice. A total of 42 QTLs were detected for the grain traits, and the Yamadanishiki alleles at 16 QTLs contributed to larger grain size. Two major QTLs essential for regulating both 100-grain weight (GWt) and grain width (GWh) were harbored in the same regions on chromosomes 5 and 10. An interaction was noted between the environment and the QTL associated with WCE on chromosome 6, which was detected in two of 3 years. In addition, two QTLs for WCE on chromosomes 3 and 10 overlapped with the QTLs for GWt and GWh, suggesting that QTLs associated with grain size also play an important role in the formation of white-core. Despite differences in the rate of grain growth in both Koshihikari and Yamadanishiki across 2 years, the WCE in Yamadanishiki remained consistent, thus demonstrating that the formation of white-core does not depend on grain filling speed. These data can be informative for programs involved in breeding better cooking and brewing rice cultivars.

  10. Differences in phytoalexin response among rice cultivars of different resistance to blast

    International Nuclear Information System (INIS)

    Dillon, V.M.; Overton, J.; Grayer, R.J.; Harborne, J.B.

    1997-01-01

    he production of both flavonoid and diterpenoid phytoalexins after induction by UV irradiation was studied in five rice genotypes of different susceptibility to the rice blast fungus Pyricularia oryzae. Consistent qualitative and quatitative differences were found between the rice cultivars in the phytoalexins produced, and there was a strong correlation between the accumulation of the phytoalexins, sakuranetin, momilactone A and oryzalexin S, and rice resistance to blast. Production of phytoalexins was also investigated in rice genotype Tetep after inoculation with an incompatible race of P. oryzae. Similar levels of sakuranetin and oryzalexin E were formed 3 days after both inoculation and UV irradiation of the leaves, but there were different levels of momilactone A and the other oryzalexins. Although a given rice genotype may respond quite differently in its production of phytoalexins depending on whether it has been irradiated or inoculated with a fungus, and in the latter case on whether a compatible race of the pathogen has been used, the present results indicate that genetic differences in phytoalexin response between rice cultivars are likely to play an important role among the many factors that determine differences in blast resistance between different rice genotypes. (author)

  11. Effects of ozone on growth, yield and leaf gas exchange rates of four Bangladeshi cultivars of rice (Oryza sativa L.)

    International Nuclear Information System (INIS)

    Akhtar, Nahid; Yamaguchi, Masahiro; Inada, Hidetoshi; Hoshino, Daiki; Kondo, Taisuke; Fukami, Motohiro; Funada, Ryo; Izuta, Takeshi

    2010-01-01

    To assess the effects of tropospheric O 3 on rice cultivated in Bangladesh, four Bangladeshi cultivars (BR11, BR14, BR28 and BR29) of rice (Oryza sativa L.) were exposed daily to charcoal-filtered air or O 3 at 60 and 100 nl l -1 (10:00-17:00) from 1 July to 28 November 2008. The whole-plant dry mass and grain yield per plant of the four cultivars were significantly reduced by the exposure to O 3 . The exposure to O 3 significantly reduced net photosynthetic rate of the 12th and flag leaves of the four cultivars. The sensitivity to O 3 of growth, yield and leaf gas exchange rates was not significantly different among the four cultivars. The present study suggests that the sensitivity to O 3 of yield of the four Bangladeshi rice cultivars is greater than that of American rice cultivars and is similar to that of Japanese rice cultivars and that O 3 may detrimentally affect rice production in Bangladesh. - Bangladeshi cultivars of rice are sensitive to O 3 below 100 ppb.

  12. Physiological and biochemical parameters for evaluation and clustering of rice cultivars differing in salt tolerance at seedling stage

    Directory of Open Access Journals (Sweden)

    Sumitahnun Chunthaburee

    2016-07-01

    Full Text Available Salinity tolerance levels and physiological changes were evaluated for twelve rice cultivars, including four white rice and eight black glutinous rice cultivars, during their seedling stage in response to salinity stress at 100 mM NaCl. All the rice cultivars evaluated showed an apparent decrease in growth characteristics and chlorophyll accumulation under salinity stress. By contrast an increase in proline, hydrogen peroxide, peroxidase (POX activity and anthocyanins were observed for all cultivars. The K+/Na+ ratios evaluated for all rice cultivars were noted to be highly correlated with the salinity scores thus indicating that the K+/Na+ ratio serves as a reliable indicator of salt stress tolerance in rice. Principal component analysis (PCA based on physiological salt tolerance indexes could clearly distinguish rice cultivars into 4 salt tolerance clusters. Noteworthy, in comparison to the salt-sensitive ones, rice cultivars that possessed higher degrees of salt tolerance displayed more enhanced activity of catalase (CAT, a smaller increase in anthocyanin, hydrogen peroxide and proline content but a smaller drop in the K+/Na+ ratio and chlorophyll accumulation.

  13. Physiological and biochemical mechanisms of seed priming-induced chilling tolerance in rice cultivars

    Directory of Open Access Journals (Sweden)

    Saddam eHussain

    2016-02-01

    Full Text Available Rice belongs to tropical and subtropical environments and is extremely sensitive to chilling stress particularly during emergence and early stages of seedling development. Seed priming can be a good approach to enhance rice germination and stand establishment under chilling stress. The present study examined the role of different seed priming techniques viz., hydropriming, osmopriming, redox priming, chemical priming, and hormonal priming, in enhancing the chilling tolerance in rice. The most effective reagents and their pre-optimized concentrations based on preliminary experiments were used in this study. Two different rice cultivars were sown under chilling stress (18˚C and normal temperatures (28˚C in separate growth chambers. A non-primed control treatment was also maintained for comparison. Chilling stress caused erratic and delayed germination, poor seedling growth, reduced starch metabolism and lower respiration rate, while higher lipid peroxidation and hydrogen peroxide accumulation in rice seedlings of both cultivars. Nevertheless, all the seed priming treatments effectively alleviated the negative effects of chilling stress. In addition, seed priming treatments triggered the activities of superoxide dismutase, peroxidase, and catalase, and enhanced the accumulations of glutathione and free proline in rice seedlings, which suggests that these measures help prevent the rice seedlings from chilling induced oxidative stress. Chemical priming with selenium and hormonal priming with salicylic acid remained more effective treatments for both rice cultivars under chilling stress than all other priming treatments. The better performance and greater tolerance of primed rice seedlings was associated with enhanced starch metabolism, high respiration rate, lower lipid peroxidation, and strong antioxidative defense system under chilling stress.

  14. Can simulation models help design rice cultivars that are more competitive against weeds?

    NARCIS (Netherlands)

    Bastiaans, L.; Kropff, M.J.; Kempuchetty, N.; Rajan, A.; Migo, T.R.

    1997-01-01

    Differences in competitive ability between rice cultivars IR8 and Mahsuri, grown in well-fertilised irrigated conditions, were analysed by means of a mechanistic simulation model (INTERCOM) for crop-weed interaction. The analysis revealed that the greater competitive ability of Mahsuri was due

  15. Cultivar difference in physicochemical properties of starches and flours from temperate rice of Indian Himalayas.

    Science.gov (United States)

    Mir, Shabir Ahmad; Bosco, Sowriappan John Don

    2014-08-15

    Starch and flour of seven temperate rice cultivars grown in Himalayan region were evaluated for composition, granule structure, crystallinity, Raman spectrometry, turbidity, swelling power, solubility, pasting properties and textural properties. The rice cultivars showed medium to high amylose content for starch (24.69-32.76%) and flour (17.78-24.86%). SKAU-382 showed the highest amount of amylose (32.76%). Rice starch showed polyhedral granule shapes and differences in their mean granule size (2.3-6.5 μm) were noted among the samples. The starch and flour samples showed type A-pattern with strong reflection at 15, 18, and 23. Pasting profile and textural analysis of rice starch and flour showed that all the cultivars differences, probably due to variation in amylose content. The present study can be used for identifying differences between rice genotypes for starch and flour quality and could provide guidance to possible industries for their end use. Copyright © 2014 Elsevier Ltd. All rights reserved.

  16. Low uptake affinity cultivars with biochar to tackle Cd-tainted rice — A field study over four rice seasons in Hunan, China

    Energy Technology Data Exchange (ETDEWEB)

    Chen, De; Guo, Hu; Li, Ruiyue [Institute of Resources, Ecosystem and Environment of Agriculture, and Center of Biochar and Green Agriculture, Nanjing Agricultural University, 1 Weigang, Nanjing 210095 (China); Li, Lianqing, E-mail: lqli@njau.edu.cn [Institute of Resources, Ecosystem and Environment of Agriculture, and Center of Biochar and Green Agriculture, Nanjing Agricultural University, 1 Weigang, Nanjing 210095 (China); Pan, Genxing [Institute of Resources, Ecosystem and Environment of Agriculture, and Center of Biochar and Green Agriculture, Nanjing Agricultural University, 1 Weigang, Nanjing 210095 (China); Chang, Andrew [Department of Environmental Sciences, University of California, Riverside, CA 92521 (United States); Joseph, Stephen [Institute of Resources, Ecosystem and Environment of Agriculture, and Center of Biochar and Green Agriculture, Nanjing Agricultural University, 1 Weigang, Nanjing 210095 (China); School of Materials Science and Engineering, University of New South Wales, Sydney, NSW 2052 (Australia)

    2016-01-15

    Biochar is becoming an environmentally friendly material for remediation of heavy metal contaminated soils and improving food safety. A field trial over four rice seasons was conducted to investigate the use of biochar and low Cd accumulating cultivars on Cd uptake in a heavy metal contaminated soil. Wheat straw derived biochar was applied at 0, 20 and 40 t ha{sup −1}. Two rice cultivars with differing Cd accumulation abilities were selected in each season. The results showed that both biochar and low Cd affinity cultivars significantly reduced rice grain Cd accumulation. Biochar had no significant effect the first season but thereafter consistently reduced rice grain Cd by a maximum of 61, 86 and 57% over the next three seasons. Zn accumulation in the rice grains was not decreased by biochar application, although available soil Zn was sharply reduced (35–91%). Indica conventional rice cultivars had much lower Cd, but higher Zn and lower Cd/Zn ratios in the grain than indica hybrid cultivars. Biochar was more effective for mitigating grain Cd accumulation in low Cd affinity cultivars than in high affinity cultivars. Soil pH was sustainably increased (up to nearly 1 unit) while available Cd significantly decreased by a maximum of 85% after biochar addition. The translocation of Cd from rice roots to shoots was reduced from 20 to 80% by biochar. Low uptake affinity cultivars combined with biochar reduced late rice grain Cd concentration and Cd/Zn ratios by 69–80% and 72–80%, respectively. It indicated that the management of combining biochar and low Cd affinity cultivars should be an efficient way to remediate Cd contaminated rice paddies and reduce health risk associated with consuming rice from these soils. - Highlights: • Biochar sustainably reduced soil Cd availability and Cd translocation in rice plant. • Indica conventional cultivars had lower Cd but higher Zn in grains than hybrid ones. • Biochar significantly reduced grain Cd and Cd/Zn ratio

  17. Low uptake affinity cultivars with biochar to tackle Cd-tainted rice — A field study over four rice seasons in Hunan, China

    International Nuclear Information System (INIS)

    Chen, De; Guo, Hu; Li, Ruiyue; Li, Lianqing; Pan, Genxing; Chang, Andrew; Joseph, Stephen

    2016-01-01

    Biochar is becoming an environmentally friendly material for remediation of heavy metal contaminated soils and improving food safety. A field trial over four rice seasons was conducted to investigate the use of biochar and low Cd accumulating cultivars on Cd uptake in a heavy metal contaminated soil. Wheat straw derived biochar was applied at 0, 20 and 40 t ha"−"1. Two rice cultivars with differing Cd accumulation abilities were selected in each season. The results showed that both biochar and low Cd affinity cultivars significantly reduced rice grain Cd accumulation. Biochar had no significant effect the first season but thereafter consistently reduced rice grain Cd by a maximum of 61, 86 and 57% over the next three seasons. Zn accumulation in the rice grains was not decreased by biochar application, although available soil Zn was sharply reduced (35–91%). Indica conventional rice cultivars had much lower Cd, but higher Zn and lower Cd/Zn ratios in the grain than indica hybrid cultivars. Biochar was more effective for mitigating grain Cd accumulation in low Cd affinity cultivars than in high affinity cultivars. Soil pH was sustainably increased (up to nearly 1 unit) while available Cd significantly decreased by a maximum of 85% after biochar addition. The translocation of Cd from rice roots to shoots was reduced from 20 to 80% by biochar. Low uptake affinity cultivars combined with biochar reduced late rice grain Cd concentration and Cd/Zn ratios by 69–80% and 72–80%, respectively. It indicated that the management of combining biochar and low Cd affinity cultivars should be an efficient way to remediate Cd contaminated rice paddies and reduce health risk associated with consuming rice from these soils. - Highlights: • Biochar sustainably reduced soil Cd availability and Cd translocation in rice plant. • Indica conventional cultivars had lower Cd but higher Zn in grains than hybrid ones. • Biochar significantly reduced grain Cd and Cd/Zn ratio, though

  18. DNA methylation polymorphism in a set of elite rice cultivars and its possible contribution to inter-cultivar differential gene expression.

    Science.gov (United States)

    Wang, Yongming; Lin, Xiuyun; Dong, Bo; Wang, Yingdian; Liu, Bao

    2004-01-01

    RAPD (randomly amplified polymorphic DNA) and ISSR (inter-simple sequence repeat) fingerprinting on HpaII/MspI-digested genomic DNA of nine elite japonica rice cultivars implies inter-cultivar DNA methylation polymorphism. Using both DNA fragments isolated from RAPD or ISSR gels and selected low-copy sequences as probes, methylation-sensitive Southern blot analysis confirms the existence of extensive DNA methylation polymorphism in both genes and DNA repeats among the rice cultivars. The cultivar-specific methylation patterns are stably maintained, and can be used as reliable molecular markers. Transcriptional analysis of four selected sequences (RdRP, AC9, HSP90 and MMR) on leaves and roots from normal and 5-azacytidine-treated seedlings of three representative cultivars shows an association between the transcriptional activity of one of the genes, the mismatch repair (MMR) gene, and its CG methylation patterns.

  19. Divergent Responses of the Diazotrophic Microbiome to Elevated CO2 in Two Rice Cultivars

    Directory of Open Access Journals (Sweden)

    Yongjie Yu

    2018-06-01

    Full Text Available The species-specific responses of plant growth to elevated atmospheric CO2 concentration (eCO2 could lead to N limitation and potentially influence the sustainability of ecosystem. Questions remain unanswered with regards to the response of soil N2-fixing community to eCO2 when developing high-yielding agroecosystem to dampen the future rate of increase in CO2 levels and associated climate warming. This study demonstrates the divergent eCO2 influences on the paddy diazotrophic community between weak- and strong-responsive rice cultivars. In response to eCO2, the diazotrophic abundance increased more for the strong-responsive cultivar treatments than for the weak-responsive ones. Only the strong-responsive cultivars decreased the alpha diversity and separated the composition of diazotrophic communities in response to eCO2. The topological indices of the ecological networks further highlighted the different co-occurrence patterns of the diazotrophic microbiome in rice cultivars under eCO2. Strong-responsive cultivars destabilized the diazotrophic community by complicating and centralizing the co-occurrence network as well as by shifting the hub species from Bradyrhizobium to Dechloromonas in response to eCO2. On the contrary, the network pattern of the weak-responsive cultivars was simplified and decentralized in response to eCO2, with the hub species shifting from Halorhodospira under aCO2 to Sideroxydans under eCO2. Collectively, the above information indicates that the strong-responsive cultivars could potentially undermine the belowground ecosystem from the diazotrophs perspective in response to eCO2. This information highlights that more attention should be paid to the stability of the belowground ecosystem when developing agricultural strategies to adapt prospective climatic scenarios by growing high-yielding crop cultivars under eCO2.

  20. NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars.

    Science.gov (United States)

    Fujita, Daisuke; Trijatmiko, Kurniawan Rudi; Tagle, Analiza Grubanzo; Sapasap, Maria Veronica; Koide, Yohei; Sasaki, Kazuhiro; Tsakirpaloglou, Nikolaos; Gannaban, Ritchel Bueno; Nishimura, Takeshi; Yanagihara, Seiji; Fukuta, Yoshimichi; Koshiba, Tomokazu; Slamet-Loedin, Inez Hortense; Ishimaru, Tsutomu; Kobayashi, Nobuya

    2013-12-17

    Increasing crop production is essential for securing the future food supply in developing countries in Asia and Africa as economies and populations grow. However, although the Green Revolution led to increased grain production in the 1960s, no major advances have been made in increasing yield potential in rice since then. In this study, we identified a gene, SPIKELET NUMBER (SPIKE), from a tropical japonica rice landrace that enhances the grain productivity of indica cultivars through pleiotropic effects on plant architecture. Map-based cloning revealed that SPIKE was identical to NARROW LEAF1 (NAL1), which has been reported to control vein pattern in leaf. Phenotypic analyses of a near-isogenic line of a popular indica cultivar, IR64, and overexpressor lines revealed increases in spikelet number, leaf size, root system, and the number of vascular bundles, indicating the enhancement of source size and translocation capacity as well as sink size. The near-isogenic line achieved 13-36% yield increase without any negative effect on grain appearance. Expression analysis revealed that the gene was expressed in all cell types: panicles, leaves, roots, and culms supporting the pleiotropic effects on plant architecture. Furthermore, SPIKE increased grain yield by 18% in the recently released indica cultivar IRRI146, and increased spikelet number in the genetic background of other popular indica cultivars. The use of SPIKE in rice breeding could contribute to food security in indica-growing regions such as South and Southeast Asia.

  1. Genetic variation of 12 rice cultivars grown in Brunei Darussalam ...

    African Journals Online (AJOL)

    Dell

    2015-03-25

    Mar 25, 2015 ... Quantum yield for B. berminyak were unaffected and it showed the least reduction in growth parameters studied when expose to salinity stress. From both salinity tolerance and genetic variation investigations for these 12 cultivars, it may probably be better to intercross between Arat (moderately tolerant) ...

  2. Genetic analysis of basmati and non-basmati Pakistani rice (oryza sativa l.) cultivars using microsatellite markers

    International Nuclear Information System (INIS)

    Rabbani, M.A.; Masood, M.A.; Shinwari, Z.K.

    2010-01-01

    Information of genetic variability and relatedness among rice genotypes is essential for future breeding programmes and derivation of superior cultivars. The objective of the present study was to evaluate the genetic relationship among traditional and improved cultivars of Pakistani rice and to determine differences in the patterns of variation between two indica rice groups: basmati and nonbasmati. Forty-one cultivars were evaluated by means of 30 microsatellite markers distributed over the whole rice genome. A total of 104 alleles were detected by 30 markers, all of them (100%) were polymorphic. The number of alleles generated by each marker ranged from 2 to 6 with an average of 3.5 alleles marker-1. Polymorphism information content (PIC) varied from 0.259 to 0.782 with an average of 0.571. A significant positive correlation (r = 0.71) was found between the number of alleles at SSR locus and the PIC values. Pair-wise Nei and Li's similarity coefficients ranged from 0.10 to 0.99. A dendrogram based on cluster analysis by microsatellite polymorphism grouped 41 rice cultivars into 2 major groups effectively differentiating the late maturing, tall and slender-grain basmati and other aromatic rice cultivars from the early, short statured, short bold and long bold grain non-aromatic cultivars. Higher level of genetic diversity between basmati and non-basmati support the concept that former had a long history of independent evolution and diverged from nonbasmati rice a long time ago through human selection and patronage. Present investigation further indicated that genetically basmati rice is different from that of coarse indica and japonica type. The results suggested that microsatellite markers could efficiently be utilized for diversity analysis, and differentiation of basmati and non-basmati rice cultivars. In addition, marker-based identification of traditional basmati rice may help in maintaining the integrity of this high quality product to the benefit of both

  3. Relative competitiveness of soybean cultivars with barnyardgrass

    Directory of Open Access Journals (Sweden)

    Marlon Ouriques Bastiani

    Full Text Available ABSTRACT The aim of this work was to evaluate the competitiveness between soybean cultivars and barnyardgrass, based on morphological and physiological characteristics of species. The experiments were conducted in completely randomized experimental design, with 4 replications. In the first study, for both soybean and barnyardgrass, it was determined the population of plants in which shoot dry matter became constant and independent of the population (16 plants∙pot−1 or 400 plants∙m−2. In the second study, 2 experiments were conducted to evaluate the competitiveness of BMX Apolo RR and BMX Potência RR soybean cultivars with barnyardgrass plants, both carried out in replacement series under different proportions of plants∙pot−1 (100:0; 75:25; 50:50; 25:75 and 0:100 between the crop and the weed. The analysis of the species competitiveness was determined through diagrams applied to replacement series experiments and use of relative competitiveness indexes. At 44 days after the emergence of species, the physiological and morphological parameters of the crop and the weed were evaluated. The BMX Apolo RR and BMX Potência RR soybean cultivars show similar competitiveness when competing with the barnyardgrass; therefore, the ability of one species to interfere on another is equivalent. For plant height, barnyardgrass displays higher competitiveness compared to BMX Apolo RR, with early cycle and short height. The intraspecific competition is more important to barnyardgrass than interspecific competition with soybean cultivars, resulting in negative effects on the morphological and physiological characteristics of species.

  4. Differences in the Sensitivity to UVB Radiation of Two Cultivars of Rice (Oryza sativa L.)

    OpenAIRE

    Jun, Hidema; Hye-Sook, Kang; Tadashi, Kumagai; Institute of Genetic Ecology, Tohoku University; Institute of Genetic Ecology, Tohoku University; Institute of Genetic Ecology, Tohoku University

    1996-01-01

    The effects of UVB radiation on the growth of two cultivars of Japanese lowland rice (Oryza sativa L.), Sasanishiki and Norin 1, were examined in a phytotron. Supplementation of visible radiation with UVB radiation reduced plant length, tiller number, the fresh and dry weights of the aboveground parts of plants, and the amounts of total leaf nitrogen, chlorophyll, soluble protein and ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in the eighth leaf, the youngest fully expanded leaf...

  5. Ancient rice cultivar extensively replaces phospholipids with non-phosphorus glycolipid under phosphorus deficiency.

    Science.gov (United States)

    Tawaraya, Keitaro; Honda, Soichiro; Cheng, Weiguo; Chuba, Masaru; Okazaki, Yozo; Saito, Kazuki; Oikawa, Akira; Maruyama, Hayato; Wasaki, Jun; Wagatsuma, Tadao

    2018-02-07

    Recycling of phosphorus (P) from P-containing metabolites is an adaptive strategy of plants to overcome soil P deficiency. This study was aimed at demonstrating differences in lipid remodelling between low-P-tolerant and -sensitive rice cultivars using lipidome profiling. The rice cultivars Akamai (low-P-tolerant) and Koshihikari (low-P-sensitive) were grown in a culture solution with [2 mg l -1 (+P)] or without (-P) phosphate for 21 and 28 days after transplantation. Upper and lower leaves were collected. Lipids were extracted from the leaves and their composition was analysed by liquid chromatography/mass spectrometry (LC-MS). Phospholipids, namely phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylglycerol (PG) and phosphatidylinositol (PI), lysophosphatidylcholine (lysoPC), diacylglycerol (DAG), triacylglycerol (TAG) and glycolipids, namely sulfoquinovosyl diacylglycerol (SQDG), digalactosyldiacylglycerol (DGDG), monogalactosyldiacylglycerol (MGDG) and 1,2-diacyl-3-O-alpha-glucuronosyl glycerol (GlcADG), were detected. GlcADG level was higher in both cultivars grown in -P than in +P and the increase was larger in Akamai than in Koshihikari. DGDG, MGDG and SQDG levels were higher in Akamai grown in -P than in +P and the increase was larger in the upper leaves than in the lower leaves. PC, PE, PG and PI levels were lower in both cultivars grown in -P than in +P and the decrease was larger in the lower leaves than in the upper leaves and in Akamai than in Koshihikari. Akamai catabolised more phospholipids in older leaves and synthesised glycolipids in younger leaves. These results suggested that extensive phospholipid replacement with non-phosphorus glycolipids is a mechanism underlying low-P-tolerance in rice cultivars. © 2018 Scandinavian Plant Physiology Society.

  6. Comparative Phosphoproteomic Analysis of the Developing Seeds in Two Indica Rice ( Oryza sativa L.) Cultivars with Different Starch Quality.

    Science.gov (United States)

    Pang, Yuehan; Zhou, Xin; Chen, Yaling; Bao, Jinsong

    2018-03-21

    Protein phosphorylation plays important roles in regulation of various molecular events such as plant growth and seed development. However, its involvement in starch biosynthesis is less understood. Here, a comparative phosphoproteomic analysis of two indica rice cultivars during grain development was performed. A total of 2079 and 2434 phosphopeptides from 1273 and 1442 phosphoproteins were identified, covering 2441 and 2808 phosphosites in indica rice 9311 and Guangluai4 (GLA4), respectively. Comparative analysis identified 303 differentially phosphorylated peptides, and 120 and 258 specifically phosphorylated peptides in 9311 and GLA4, respectively. Phosphopeptides in starch biosynthesis related enzymes such as AGPase, SSIIa, SSIIIa, BEI, BEIIb, PUL, and Pho1were identified. GLA4 and 9311 had different amylose content, pasting viscosities, and gelatinization temperature, suggesting subtle difference in starch biosynthesis and regulation between GLA4 and 9311. Our study will give added impetus to further understanding the regulatory mechanism of starch biosynthesis at the phosphorylation level.

  7. Identification of rice cultivars with low brown rice mixed cadmium and lead contents and their interactions with the micronutrients iron, zinc, nickel and manganese.

    Science.gov (United States)

    Li, Bing; Wang, Xun; Qi, Xiaoli; Huang, Lu; Ye, Zhihong

    2012-01-01

    Paddy fields in mining areas are usually co-contaminated by a cocktail of mixed toxic heavy metals (e.g., Cd and Pb in Pb/Zn mines). However, previous studies on rice cultivars screened for effective metal exclusion have mostly focused on individual metals, and have been conducted under pot-trial or hydroponic solution conditions. This study identified rice cultivars with both low Cd and Pb accumulation under Cd- and Pb-contaminated field conditions, and the interactions of the toxic elements Cd and Pb with the micronutrient elements Fe, Zn, Mn and Ni were also studied. Among 32 rice cultivars tested, there were significant differences in Cd (0.06-0.59 mg/kg) and Pb (0.25-3.15 mg/kg) levels in their brown rice, and similar results were also found for the micronutrient elements. Significant decreases in concentrations of Fe and Mn were detected with increasing Cd concentrations and a significant elevation in Fe, Mn and Ni with increasing Pb concentrations. A similar result was also shown by Cd and Ni. Three cultivars were identified with a combination of low brown rice Cd and Pb, high micronutrient and grain yield (Wufengyou 2168, Tianyou 196 and Guinongzhan). Present results suggest that it is possible to breed rice cultivars with low mixed toxic element (Cd, Pb) and high micronutrient contents along with high grain yields, thus ensuring food safety and quality.

  8. Reaction of rice cultivars to a virulent Rice Yellow Mottle Virus strain ...

    African Journals Online (AJOL)

    Isolates of RYMV were collected from three “hot-spots” in Uganda (Lira, Luweero and Iganga). The isolate from Iganga was most virulent on RYMV susceptible cultivar (IR64), and thus used to constitute study treatment evaluated in the study. Cultivars were potted and raised in a screenhouse experiment arranged in a ...

  9. DNA tagging of blast resistant gene(s in three Brazilian rice cultivars

    Directory of Open Access Journals (Sweden)

    S.S. Sandhu

    2003-12-01

    Full Text Available Rice blast is the most important fungal disease of rice and is caused by Pyricularia oryzae Sacc. (Telomorph Magnoporthe grisea Barr.. Seven randomly amplified polymorphic DNA (RAPD markers OPA5, OPG17, OPG18, OPG19, OPF9, OPF17 and OPF19 showed very clear polymorphism in resistant cultivar lines which differed from susceptible lines. By comparing different susceptible lines, nine DNA amplifications of seven primers (OPA5(1000, OPA5(1200, OPG17(700, OPG18(850, OPG19(500, OPG19(600, OPF9(600, OPF17(1200 and OPF19(600 were identified as dominant markers for the blast resistant gene in resistant cultivar lines. These loci facilitate the indirect scoring of blast resistant and blast susceptible genotypes. The codomine RAPDs markers will facilitate marker-assisted selection of the blast resistant gene in two blast resistant genotypes of rice (Labelle and Line 11 and will be useful in rice breeding programs.

  10. Expression patterns of ABA and GA metabolism genes and hormone levels during rice seed development and imbibition: a comparison of dormant and non-dormant rice cultivars.

    Science.gov (United States)

    Liu, Yang; Fang, Jun; Xu, Fan; Chu, Jinfang; Yan, Cunyu; Schläppi, Michael R; Wang, Youping; Chu, Chengcai

    2014-06-20

    Seed dormancy is an important agronomic trait in cereals. Using deep dormant (N22), medium dormant (ZH11), and non-dormant (G46B) rice cultivars, we correlated seed dormancy phenotypes with abscisic acid (ABA) and gibberellin (GA) metabolism gene expression profiles and phytohormone levels during seed development and imbibition. A time course analysis of ABA and GA content during seed development showed that N22 had a high ABA level at early and middle seed developmental stages, while at late developmental stage it declined to the level of ZH11; however, its ABA/GA ratio maintained at a high level throughout seed development. By contrast, G46B had the lowest ABA content during seed development though at early developmental stage its ABA level was close to that of ZH11, and its ABA/GA ratio peaked at late developmental stage that was at the same level of ZH11. Compared with N22 and G46B, ZH11 had an even and medium ABA level during seed development and its ABA/GA ratio peaked at the middle developmental stage. Moreover, the seed development time-point having high ABA/GA ratio also had relatively high transcript levels for key genes in ABA and GA metabolism pathways across three cultivars. These indicated that the embryo-imposed dormancy has been induced before the late developmental stage and is determined by ABA/GA ratio. A similar analysis during seed imbibition showed that ABA was synthesized in different degrees for the three cultivars. In addition, water uptake assay for intact mature seeds suggested that water could permeate through husk barrier into seed embryo for all three cultivars; however, all three cultivars showed distinct colors by vanillin-staining indicative of the existence of flavans in their husks, which are dormancy inhibition compounds responsible for the husk-imposed dormancy. Copyright © 2014. Published by Elsevier Ltd.

  11. Identification of rice cultivar with exclusive characteristic to Cd using a field-polluted soil and its foreground application.

    Science.gov (United States)

    Zhan, Jie; Wei, Shuhe; Niu, Rongcheng; Li, Yunmeng; Wang, Shanshan; Zhu, Jiangong

    2013-04-01

    Using low-accumulative plant, especially excluder crop, to safely produce food is one of the very important technologies of phytoremediation, which is practical to safe production and long-term remediation of heavy metal-contaminated soil. A pot experiment using field cadmium (Cd)-contaminated soil (Cd concentration was 0.75 mg kg(-1)) was conducted to compare Cd accumulation differences among 39 normal rice cultivars (Japonica) in Shenyang region of China for food safety and high grain yield aim. The results showed that brown grain Cd concentration in 12 rice cultivars of a total of 39 tested cultivars was lower than 0.2 mg kg(-1) (Agricultural Trade Standard of Nonpollution Food for Rice of China, NY 5115-2008). In these 12 cultivars, Cd enrichment factors (Cd concentration ratio in shoot to that in soil) of nine cultivars were lower than 1. Likewise, Cd translocation factors (Cd concentration ratio in shoot to that in root) of eight cultivars were lower than the 0.28 average. Furthermore, grain yield per pot of seven cultivars were higher than the average 18.4 g pot(-1). Four cultivars, i.e., Shendao 5, Tianfu 1, Fuhe 90, and Yanfeng 47 showed Cd-exclusive characteristic and better foreground application.

  12. Variation in Yield and Physicochemical Quality Traits among Mutants of Japonica Rice Cultivar Wuyujing 3

    Directory of Open Access Journals (Sweden)

    Jose Daniel Abacar

    2016-01-01

    Full Text Available To select elite germplasms, 112 mutants derived from japonica rice cultivar Wuyujing 3 were evaluated. The yield components such as panicle number per square meter, grain number per panicle, and grain weight were measured. The quality traits such as percentage of chalky grains (PCG, brown rice yield (BRY, milled rice yield (MRY, degree of milling (DM, amylose content (AC, protein content (PC, and relationships among traits were inverstigated. Results showed that grain yield ranged from 2.15 to 12.49 t/hm2 with a mean of 6.4 t/hm2 and number of grains per square meter contributed for 94.64% in grain yield variation. For quality traits, all rice mutants had short size (grain length ≤ 5.5 mm and bold shape (grain length to width ratio = 1.10–2.00. Most of rice mutants (87.5% had PCG values below 20%. All mutants had MRY values above 50%, AC values below 20%, and PC values below 10%. Percentage of chalky grains was significantly negatively correlated with MRY and positively correlated with DM. BRY and MRY were significantly negatively correlated with DM. PC was significantly and positively correlated with MRY and negatively correlated with DM, while AC had no significant correlation with these quality traits. It was concluded that there were 25 rice mutants which fulfilled the major requirements of Jiangsu standard japonica rice such as low percentage of chalky grains, low amylose content, optimal protein content, and which could be used as elite germplasms. Thus the mutants identified may lead to significant progress in improvement of rice quality.

  13. Variation among conventional cultivars could be used as a criterion for environmental safety assessment of Bt rice on nontarget arthropods

    Science.gov (United States)

    Wang, Fang; Dang, Cong; Chang, Xuefei; Tian, Junce; Lu, Zengbin; Chen, Yang; Ye, Gongyin

    2017-02-01

    The current difficulty facing risk evaluations of Bacillus thuringiensis (Bt) crops on nontarget arthropods (NTAs) is the lack of criteria for determining what represents unacceptable risk. In this study, we investigated the biological parameters in the laboratory and field population abundance of Nilaparvata lugens (Hemiptera: Delphacidae) on two Bt rice lines and the non-Bt parent, together with 14 other conventional rice cultivars. Significant difference were found in nymphal duration and fecundity of N. lugens fed on Bt rice KMD2, as well as field population density on 12 October, compared with non-Bt parent. However, compared with the variation among conventional rice cultivars, the variation of each parameter between Bt rice and the non-Bt parent was much smaller, which can be easily seen from low-high bar graphs and also the coefficient of variation value (C.V). The variation among conventional cultivars is proposed to be used as a criterion for the safety assessment of Bt rice on NTAs, particularly when statistically significant differences in several parameters are found between Bt rice and its non-Bt parent. Coefficient of variation is suggested as a promising parameter for ecological risk judgement of IRGM rice on NTAs.

  14. Evaluation of methane emissions of some rice cultivars of Sri Lanka

    Energy Technology Data Exchange (ETDEWEB)

    Namaratne, S.Y.; Alwis, H.P.W. de [Institute of Fundamental Studies, Kandy (Sri Lanka)

    1996-12-31

    A field experiment on three local rice cultivars, namely BG 300, BG 304 and AT 303, showed no statistically significant difference (p<0.05) among them with-respect to the methane flux emitted. The methane flux profiles of all three varieties indicated a more or less constant emission during the vegetative and reproductive periods, a peak emission during late flowering/early ripening stage and a dramatic increase in the flux during the late ripening period. The seasonal methane flux of BG 300, BG 304 and AT 303 were 200 {+-} 48, 156 {+-} 52 and 129 {+-} 40 g m{sup {minus}2}, respectively for a 92 day cropping period.

  15. Performance of different rice cultivars and insecticides against tryporyza incertulas (walker) and cnaphalocrocis medinalis (guenee)

    International Nuclear Information System (INIS)

    Rashid, M.M.U.; Khattak, M.K.; Momin, A.; Amir, M.; Latif, A.

    2013-01-01

    Studies were conducted to determine the toxicity of Roll Up (7.2% G), Furadan (3G), Solomon (300-0-Teq), Belt (48% SC), Karuz (4% GR) and Shark Super (6% G) and relative resistance of rice varieties IRRI-6, KSK-282, DR-83, Basmati-370, Basmati-385 and Super Basmati against rice stem borer and rice leaf folder and their effect on yield ha/sup -1/. Roll Up and Shark Super ranked first in their efficacy against rice stem borer; as 0.64% and 0.63% dead hearts and 0.32 and 0.33% white heads were recorded, respectively, and which were significantly (P < 0.05) lower than control. Solomon with 0.73% infestation was the most effective insecticide against rice leaf folder. Rice varieties IRRI-6 and KSK-282 were the most resistant varieties against rice stem borer; as 14.73% and 18.34% dead hearts, and 4.33% and 4.77% white heads were significantly (P < 0.05) lower than the other tested varieties. Similarly IRRI-6, KSK-282 and DR-83 also showed resistance to rice leaf folder. Basmati-385 was the most susceptible variety against rice leaf folder. KSK-282 with 5656 kg ha/sup -1/ yield ranked first. Plots treated with shark super resulted in to highest (7014 kg ha/sup -1/) yield whereas; plots treated with Karuz resulted into lowest (5984 kg ha/sup -1/) yield. (author)

  16. Nitrogen fertilizer management for tidal submergence tolerant landrace rice (Oryza sativa L. cultivars

    Directory of Open Access Journals (Sweden)

    M.A.A. Mamun

    2017-12-01

    Full Text Available In tidal submergence ecosystem, nitrogen (N is a crucial nutrient for improved and sustainable rice production. Therefore, a series of on-farm and on-station field experiments were conducted to develop a suitable N management practice for tidal submergence tolerant landrace aman rice. In on-farm, urea deep placement (UDP through urea super granule before panicle initiation (PI stage was compared with no fertilizer application. Similarly, five N fertilizer management practices viz. (i. two splits of prilled urea (PU, (ii. UDP at 10 DAT, (iii. UDP before PI, (iv. full dose PU before PI and (v. No urea (control were compared at on-station trial. Tidal submergence tolerance aman rice varieties (Rajashail, Kutiagni, Sadamota and Lalmota were used as testing materials. In on farm experiment, aman cultivars produced 2.0–2.5 t ha−1 grain without N fertilizer. But, cultivated Rajashail, Kutiagni, Sadachikon, Sadapajam, Lalmota and Sadamota gave 3.0–3.5 t ha−1 grain yield with the UDP before PI in tidal prone areas. Though UDP required fertilizer and application cost but it gave profit upto 22,000 BDT ha−1 (Bangladeshi Taka. In on-station experiment, UDP before PI stage significantly increased rice yield and economic return although it was comparable to two splits of PU and top dressing of PU before PI stage. However, UDP at 10 DAT increased straw yield but failed to increase grain yield even compared to control. It could be concluded that UDP before PI stage of rice is an effective method for increasing rice yield and farm income in tidal prone areas.

  17. Response of rice cultivars to rates of nitrogen and potassium application in field and pot conditions.

    Science.gov (United States)

    Bahmaniar, M A; Ranjbar, G A

    2007-05-01

    Nitrogen and potassium are the yield-limiting nutrients in rice production regions of Iran. Use of N and K efficient cultivars is an important complementary strategy in improving rice yield, increasing the quality properties of rice grains and reducing cost of production. In order to consider the effects of different amounts of N and K application on rice (Oryza sativa L.) yield and yield components in pot and field conditions these experiments were undertaken in 2004 at Sari Agricultural Station, Iran. Four levels of N (0, 50, 100 and 150 Kg N ha(-1) in field and 0, 0.6, 1.2 and 1.8 g N pot(-1) in pot) corresponding with four levels of K (0, 75, 150 and 225 kg K2O ha(-1) in field and 0, 0.5, 1 and 1.5 g K2O pot(-1) in pot) were applied in a split-factorial plot design with three replications in both pot and field experiments, variously. Grain yield, number of grain per panicle, number of tiller, plant height, length of flag leaf, total and shoot dry matter, 1000 grain weight and harvest index have been increased by N application in field conditions. However, in pot conditions grain yield, number of grain per panicle, number of tiller, plant height, width of flag leaf, total and shoot dry matter, leaf nitrogen contents and harvest index have significantly been increased (p pot conditions (p < or = 0.05).

  18. Characterization and Assessment of Flavor Compounds and Some Allergens in Three Iranian Rice Cultivars during Gelatinization Process by HS-SPME/GC-MS

    Directory of Open Access Journals (Sweden)

    M. H. Givianrad

    2012-01-01

    Full Text Available A combined gas chromatography mass spectrometry with headspace solid-phase microextraction method has been utilized for the analysis of the flavor volatiles of three different rice cultivars including two modified Iranian rice cultivars and Hashemi rice cultivar during gelatinization. As a result, while gelatinization would progress, the amount of the volatile compounds would be also increased. Altogether, 74, 55 and 66 components were identified for Hashemi, HD5 and HD6 rice samples, respectively, which 56 unique compounds were not identified, previously. Subsequently, seven fragrance chemicals have been detected, which were most frequently reported as contact allergens in the European Union.

  19. Differential gene expression in an elite hybrid rice cultivar (Oryza sativa, L and its parental lines based on SAGE data

    Directory of Open Access Journals (Sweden)

    Chen Chen

    2007-09-01

    Full Text Available Abstract Background It was proposed that differentially-expressed genes, aside from genetic variations affecting protein processing and functioning, between hybrid and its parents provide essential candidates for studying heterosis or hybrid vigor. Based our serial analysis of gene expression (SAGE data from an elite Chinese super-hybrid rice (LYP9 and its parental cultivars (93-11 and PA64s in three major tissue types (leaves, roots and panicles at different developmental stages, we analyzed the transcriptome and looked for candidate genes related to rice heterosis. Results By using an improved strategy of tag-to-gene mapping and two recently annotated genome assemblies (93-11 and PA64s, we identified 10,268 additional high-quality tags, reaching a grand total of 20,595 together with our previous result. We further detected 8.5% and 5.9% physically-mapped genes that are differentially-expressed among the triad (in at least one of the three stages with P-values less than 0.05 and 0.01, respectively. These genes distributed in 12 major gene expression patterns; among them, 406 up-regulated and 469 down-regulated genes (P Conclusion We improved tag-to-gene mapping strategy by combining information from transcript sequences and rice genome annotation, and obtained a more comprehensive view on genes that related to rice heterosis. The candidates for heterosis-related genes among different genotypes provided new avenue for exploring the molecular mechanism underlying heterosis.

  20. Germination of several groundnut cultivars in relation to incidence of ...

    African Journals Online (AJOL)

    This experiment is concerned with the germination of nine cultivars of groundnut grown in Nigeria in relation to incidence of fungi. The cultivars were NHK 5V8, NUTII 288, Samnut 10, 11, 21, 22, 23, 24 and MK 373. Germination potential was assessed after 10 days of planting in petri-dishes. Parameters such as seedling ...

  1. Eficiência produtiva de cultivares de arroz com divergência fenotípica Production efficiency of rice cultivars with phenotypic diversity

    Directory of Open Access Journals (Sweden)

    Cleber M. Guimarães

    2008-10-01

    Full Text Available O objetivo do trabalho foi avaliar, fenotipicamente, as cultivares de arroz tradicionais Guarani e Caiapó, e as modernas, CIRAD L(-141, Maravilha, BR IRGA 409 e Metica 1, por meio da associação entre os vários componentes da produtividade de grãos, para prover base de seleção genética em populações de plantas. O estudo foi conduzido na estação chuvosa do ano agrícola de 2003-2004, na área experimental da Embrapa Arroz e Feijão, em Santo Antônio de Goiás, GO. Em condições de sequeiro, com suplementação hídrica, as cultivares de arroz de terras altas CIRAD L(-141, Guarani, Caiapó e Maravilha, apresentaram maiores índices de colheita e menores percentagens de esterilidade de espiguetas que as de arroz irrigado BR IRGA 409 e Metica 1. Concluiu-se que a maior produção de biomassa pelas cultivares de arroz irrigado não se refletiu na produtividade de grãos. A CIRAD L(-141 por apresentar alta área foliar, panículas densas com alto número de grãos e um comportamento intermediário em todos os componentes avaliados, como índice de colheita, massa dos grãos, fertilidade de perfilhos, perfilhamento, esterilidade de espiguetas e taxa de crescimento, produziu 12,5% a mais que a segunda mais produtiva. O aumento do índice de colheita e da massa dos grãos e a redução da esterilidade das espiguetas devido às suas altas correlações com a produtividade, são considerados prioritários em programas de melhoramento de arroz que visem obter cultivares mais produtivas.The objective of this study was to phenotypically evaluate the traditional rice cultivars Guarani and Caiapó, and the modern rice cultivars CIRAD L(-141, Maravilha, BR IRGA 409, and Metica 1 through association among various yield components to establish a genetic selection base in plant population. The study was conducted during the rainy season of 2003-2004, at the Embrapa Rice & Beans experimental station, in Santo Antônio de Goiás, Goiás, Brazil. With

  2. Analysis and comparison of fragrant gene sequence in some rice cultivars

    Directory of Open Access Journals (Sweden)

    Karami Noushafarin

    2016-01-01

    Full Text Available It is known that the fragrant trait in rice (Oryza sativa L. is largely controlled by fgr gene on chromosome 8 and it has been specified that the existence of an 8 bp deletion and three single nucleotide polymorphism (SNP in exon 7 is effective on this trait. In this study, sequence alignment analysis of fgr exon7 on chromosome 8 for 11 different fragrant and non-fragrant cultivars revealed that 5 aromatic rice cultivars carried 3 SNPs and 8 bp deletion in exon7 which terminates prematurely at a TAA stop codon. However, 5 of the non-aromatics showed a sequence identical to the published Nipponbare, being non-fragrant Japonica variety sequence. An exception among them was Bejar, which had 8 bp deletion and 3SNPs but it was non-aromatic. Sequencing can determine nucleotide alignment of a gene and give beneficial information about gene function. In silico prediction showed proteins sequences alignment of fgr gene for Khazar and Domsiah genotypes were different. Betaine aldehyde dehydrogenase complete enzyme belongs to Khazar non-fragrant genotype that has complete length and 503 amino acids while non-functional BADH2 enzyme for Domsiah fragrant genotype has 251 amino acids that result in accumulate 2-acetyl-1-pyrroline (2AP and produces aroma in fragrant genotypes.

  3. Tagging microsatellite marker to a blast resistance gene in the irrigated rice cultivar Cica-8

    Directory of Open Access Journals (Sweden)

    Thiago Martins Pinheiro

    2012-09-01

    Full Text Available The rice cultivar Cica-8 exhibit differential reaction to several pathotypes of Magnaporthe oryzae. The objective of the present investigation was to determine the number of alleles involved in the expression of resistance to leaf blast and identify microsatellite markers linked to these alleles. A cross between cultivar Metica-1 and Cica-8 susceptible and resistant, respectively, to pathotype IB-1 (Py1049 was made to obtain F1, F2, BC1:1 and BC1:2 progenies. Greenhouse tests for leaf blast reaction showed that resistance is controlled by a monogenic dominant gene. For testing microsatellite markers, DNA of both resistant and susceptible parents and F1 and F2 populations was extracted. As expected for single dominant gene the F2 populations segregated at a ratio of 3:1. Of the 11 microsatellite markers tested, one marker RM 7102 was found to be closely linked to the resistant allele at a distance of 2.7 cM, in the cultivar Cica-8 to pathotype IB-1.

  4. Differences in the sensitivity to UVB radiation of two cultivars of rice (Oryza sativa L.)

    International Nuclear Information System (INIS)

    Hidema, J.; Kang, H.S.; Kumagai, T.

    1996-01-01

    The effects of UVB radiation on the growth of two cultivars of Japanese lowland rice (Oryza sativa L.), Sasanishiki and Norin 1, were examined in a phytotron. Supplementation of visible radiation with UVB radiation reduced plant length, tiller number, the fresh and dry weights of the aboveground parts of plants, an the amounts of total leaf nitrogen, chlorophyll, soluble protein and ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in the eight leaf, the youngest fully expanded leaf. By contrast, UVB radiation significantly increased the accumulation of UV-absorbing compounds. There was a difference between the two cultivars in the resistance to the effects of UVB radiation. The reduction in the amounts of Rubisco was smaller in Sasanishiki, while the increase in the accumulation of UV-absorbing compounds was greater in Sasanishiki. Parameters of plant growth, with the exception of the amount of Rubisco, decreased in direct proportion to decreases in total leaf nitrogen in plants grown under lower or the Rubisco content of Norin 1 grown under a high dose of UVB radiation was exceptionally marked, and was not observed similarly in Sasanishiki. The results suggest that the remarkable reduction in rubisco content in NOrin 1 might have been due to the specific effects of UVB radiation. It is also suggested that the difference between cultivars in the resistance to UVB radiation might be due to the differences in the levels of Rubisco and in UV-absorbing compounds that are induced by UVB radiation

  5. Reactive oxygen species dynamics in roots of salt sensitive and salt tolerant cultivars of rice.

    Science.gov (United States)

    Saini, Shivani; Kaur, Navdeep; Pati, Pratap Kumar

    2018-06-01

    Salinity stress is one of the major constraints for growth and survival of plants that affects rice productivity worldwide. Hence, in the present study, roots of two contrasting salinity sensitive cultivars, IR64 (IR64, salt sensitive) and Luna Suvarna (LS, salt tolerant) were compared with regard to the levels of reactive oxygen species (ROS) to derive clues for their differential salt stress adaptation mechanisms. In our investigation, the tolerant cultivar exhibited longer primary roots, more lateral roots, higher root number leading to increased root biomass, with respect to IR64. It was observed that LS roots maintained higher level of H 2 O 2 in comparison to IR64. The activities of various enzymes involved in enzymatic antioxidant defense mechanism (SOD, CAT, GPX, DHAR and MDHAR) were found to be greater in LS roots. Further, the higher transcript level accumulation of genes encoding ROS generating (RbohA, RbohD and RbohE) and scavenging enzymes (Fe-SOD, Chloroplastic Cu/Zn-SOD, CAT and DHAR) were noticed in the roots of tolerant cultivar, LS. Moreover, the content of other stress markers such as total protein and proline were also elevated in LS roots. While, the expression of proline biosynthesis gene (P5CS) and proline catabolism gene (PDH) was observed to be lower in LS. Copyright © 2018. Published by Elsevier Inc.

  6. An improved protocol for efficient transformation and regeneration of diverse indica rice cultivars

    Directory of Open Access Journals (Sweden)

    Sahoo Khirod K

    2011-12-01

    Full Text Available Abstract Background Rice genome sequencing projects have generated remarkable amount of information about genes and genome architecture having tremendous potential to be utilized in both basic and applied research. Success in transgenics is paving the way for preparing a road map of functional genomics which is expected to correlate action of a gene to a trait in cellular and organismal context. However, the lack of a simple and efficient method for transformation and regeneration is a major constraint for such studies in this important cereal crop. Results In the present study, we have developed an easy, rapid and highly efficient transformation and regeneration protocol using mature seeds as explants and found its successful applicability to a choice of elite indica rice genotypes. We have optimized various steps of transformation and standardized different components of the regeneration medium including growth hormones and the gelling agent. The modified regeneration medium triggers production of large number of shoots from smaller number of calli and promotes their faster growth, hence significantly advantageous over the existing protocols where the regeneration step requires maximum time. Using this protocol, significantly higher transformation efficiency (up to 46% and regeneration frequency (up to 92% for the untransformed calli and 59% for the transformed calli were achieved for the four tested cultivars. We have used this protocol to produce hundreds of independent transgenic lines of different indica rice genotypes. Upon maturity, these transgenic lines were fertile thereby indicating that faster regeneration during tissue culture did not affect their reproductive potential. Conclusions This speedy, yet less labor-intensive, protocol overcomes major limitations associated with genetic manipulation in rice. Moreover, our protocol uses mature seeds as the explant, which can easily be obtained in quantity throughout the year and kept

  7. Characterization of 140 Japanese and world rice collections cultivated in Nihonmatsu-city in Fukushima in terms of radiocesium activity concentrations in seed grains and straws to explore rice cultivars with low radiocesium accumulation

    International Nuclear Information System (INIS)

    Katsuhiro Kojima; Djedidi Salem

    2017-01-01

    We studied varietal difference in radiocesium accumulation by using Japanese and World rice collection for future development of low accumulation varieties. As a result, the radiocesium activity concentration varied by 12- and 22-fold in seed grains and straws, respectively. When we examined the seed grain to straw ratio of radiocesium activity concentration, paddy rice cultivars of Japonica sub-species showed a lower result than Indica and Javanica paddy rice cultivars. These observations suggest that the Japonica paddy rice cultivars may have the property of repressing radioactive cesium translocation to edible parts. (author)

  8. Induction of resistance to rice tungro virus disease in rice cultivar Pusa 2-21 through irradiation

    International Nuclear Information System (INIS)

    Mathur, S.C.; Rao, M.; Prakash, Jitendra

    1979-01-01

    The dry seeds of Pusa 2-21, a moderately resistant rice cultivar, were subjected to 10, 15 and 20 Krad (dose rate 12.3 Krad/min) radiation dosages of gamma rays to induce resistance against rice tungro virus disease. The height of M 1 seedling was significantly reduced in 15 and 20 Krad treatments. However, there was no effect of gamma irradiation on seed germination. A limited population of M 2 and M 3 generation was screened at the rate of 3 viruliferous leafhoppers/seedling using single plant caging technique. In M 2 generation 22.0, 17.6 and 25.0 percent seedlings exhibited green colour (symptomless) representing resistant reaction to the disease in 10, 15 and 20 Krad treatments, respectively. Out of 1470 seedlings in M 3 generation, 2.7 percent seedlings showing no symptoms of tungro could be isolated indicating the possibility of inducing higher degree of resistance than that of the parent to RTV through irradiation for the first time. (auth.)

  9. Cultivar weed-competitiveness in aerobic rice : heritability, correlated traits, and the potential for indirect selection in weed-free environments

    NARCIS (Netherlands)

    Zhao, D.L.; Atlin, G.N.; Bastiaans, L.; Spiertz, J.H.J.

    2006-01-01

    Forty rice (Oryza sativa L.) cultivars and breeding lines used in the International Rice Research Institute (IRRI) upland rice breeding program were evaluated in adjacent weed-free and weedy trials in aerobic soil conditions during the wet seasons of 2001, 2002, and 2003. The objectives of this

  10. An improved Agrobacterium-mediated transformation of recalcitrant indica rice (Oryza sativa L.) cultivars.

    Science.gov (United States)

    Shri, Manju; Rai, Arti; Verma, Pankaj Kumar; Misra, Prashant; Dubey, Sonali; Kumar, Smita; Verma, Sikha; Gautam, Neelam; Tripathi, Rudra Deo; Trivedi, Prabodh Kumar; Chakrabarty, Debasis

    2013-04-01

    Agrobacterium-mediated transformation of indica rice varieties has been quite difficult as these are recalcitrant to in vitro responses. In the present study, we established a high-efficiency Agrobacterium tumefaciens-mediated transformation system of rice (Oryza sativa L. ssp. indica) cv. IR-64, Lalat, and IET-4786. Agrobacterium strain EHA-101 harboring binary vector pIG121-Hm, containing a gene encoding for β-glucuronidase (GUS) and hygromycin resistance, was used in the transformation experiments. Manipulation of different concentrations of acetosyringone, days of co-culture period, bacterial suspension of different optical densities (ODs), and the concentrations of L-cysteine in liquid followed by solid co-culture medium was done for establishing the protocol. Among the different co-culture periods, 5 days of co-culture with bacterial cells (OD600 nm = 0.5-0.8) promoted the highest frequency of transformation (83.04 %) in medium containing L-cysteine (400 mg l(-1)). Putative transformed plants were analyzed for the presence of a transgene through genomic PCR and GUS histochemical analyses. Our results also suggest that different cultural conditions and the addition of L-cysteine in the co-culture medium improve the Agrobacterium-mediated transformation frequencies from an average of 12.82 % to 33.33 % in different indica rice cultivars.

  11. Incorporation of Bacterial Blight Resistance Genes Into Lowland Rice Cultivar Through Marker-Assisted Backcross Breeding.

    Science.gov (United States)

    Pradhan, Sharat Kumar; Nayak, Deepak Kumar; Pandit, Elssa; Behera, Lambodar; Anandan, Annamalai; Mukherjee, Arup Kumar; Lenka, Srikanta; Barik, Durga Prasad

    2016-07-01

    Bacterial blight (BB) of rice caused by Xanthomonas oryzae pv. oryzae is a major disease of rice in many rice growing countries. Pyramided lines carrying two BB resistance gene combinations (Xa21+xa13 and Xa21+xa5) were developed in a lowland cultivar Jalmagna background through backcross breeding by integrating molecular markers. In each backcross generation, markers closely linked to the disease resistance genes were used to select plants possessing the target genes. Background selection was continued in those plants carrying resistant genes until BC(3) generation. Plants having the maximum contribution from the recurrent parent genome were selected in each generation and hybridized with the recipient parent. The BB-pyramided line having the maximum recipient parent genome recovery of 95% was selected among BC3F1 plants and selfed to isolate homozygous BC(3)F(2) plants with different combinations of BB resistance genes. Twenty pyramided lines with two resistance gene combinations exhibited high levels of tolerance against the BB pathogen. In order to confirm the resistance, the pyramided lines were inoculated with different X. oryzae pv. oryzae strains of Odisha for bioassay. The genotypes with combination of two BB resistance genes conferred high levels of resistance to the predominant X. oryzae pv. oryzae isolates prevalent in the region. The pyramided lines showed similarity with the recipient parent with respect to major agro-morphologic traits.

  12. Suscetibilidade de biótipos de arroz-vermelho e de cultivares de arroz irrigado ao herbicida imazethapyr Susceptibility of red rice biotypes and commercial rice cultivars to imazethapyr

    Directory of Open Access Journals (Sweden)

    S.H.B. Dornelles

    2010-01-01

    Full Text Available Para avaliar a suscetibilidade de biótipos de arroz-vermelho(Oryza sativa e cultivares comerciais de arroz ao herbicida imazethapyr, realizou-se um ensaio em casa de vegetação com cinco biótipos de arroz-vermelho (acessos Santa Maria 5, Pelotas 3, Rio Pardo 1, Manoel Viana 2 e Catuçaba 1, dois cultivares comerciais de arroz: Clearfield® (IRGA 422 CL e Puitá INTA CL e um cultivar convencional (IRGA 417. Utilizou-se a metodologia de curvas de dose-resposta proposta por Seefeldt et al. (1995. A metodologia de curvas de resposta foi gerada a partir dos parâmetros do modelo logístico e dos valores de I50. Os biótipos de arroz-vermelho e os cultivares foram submetidos a seis doses do herbicida imazethapyr (0; 33,12; 66,25; 132,5; 265,0; e 530,0 g i.a. ha-1. As plantas de arroz foram contadas e coletadas no 20º dia após a aplicação dos tratamentos. A análise do percentual de dano foi realizada através de avaliação visual da fitointoxicação (%, massa verde e massa seca das plantas. Analisando as curvas e os resultados da análise da variância, pode-se inferir que os cultivares Clearfield Irga 422 CL e Puitá INTA CL foram significativamente iguais ao biótipo de arroz-vermelho Catuçaba 1, resistindo a doses de imazethapyr superiores à recomendada em campo para o sistema Clearfield®. Os biótipos Manoel Viana 2, Santa Maria 5 e Pelotas 3 agruparam-se com o cultivar convencional IRGA 417, sendo suscetíveis à dose comercial do herbicida. O biótipo Rio Pardo 1 também é resistente ao herbicida imazethapyr, porém menos resistente que o biótipo Catuçaba 1.To evaluate the susceptibility of biotypes of red rice (Oryza sativa and commercial rice cultivars to the herbicide imazethapyr, a greenhouse assay was conducted with five red rice biotypes (accesses Santa Maria 5, Pelotas 3, Rio Pardo 1, 2 and Manoel Viana Catuçaba 1, two commercial rice cultivars: Clearfield ® (Irga CL 422 and CL Puit INTA, and a conventional cultivar (Irga

  13. Effects of Different Planting Times of Different Rice Cultivars on Control of the Striped Stem Borer (Chilo suppressalis (Lepidoptera: Pyralidae

    Directory of Open Access Journals (Sweden)

    T. Oskou

    2016-06-01

    Full Text Available Introduction: Rice (Oryza sativa L. is one of the world’s most important staple food crops. In Asia, it is the main item of the diet of 3.5 billion people. Rice stem borers are common insect pests in many rice growing countries. Striped stem borer (Chilo suppressalis Walker, belonging to Lepidoptera and family of Pyralidae is the most important rice pest in the Northern Iran. Stem borer larva damages rice stem and disturbs nutrient translocation from root to leaf. As the result, tillers in vegetative stage died, which is called dead heart. When larva infests generative stage, it causes empty panicle, which is called white head. Integrated pest management (IPM practices for controlling the stem borers in Iran have not been fully implemented because of limited control technologies which are available. Farmers often rely on heavily insecticide application, although many insecticide applications are not effective. Therefore, many physical and cultural practices have been suggested, including adjustment of planting time to escape the plant from heavy pest. Materials and Methods: The study was conducted in deputy of rice research institute in Amol, Mazandaran, Iran, during 2011-2012. The experiment was arranged in split plot design with planting time as main plot and cultivar as subplot and was replicated three times. Three planting times tested were the first planting time i.e. 15 days before farmers’ planting time, the second planting time (simultaneously with farmers’ planting time, and the third planting time (15days after farmers’ planting time. Six rice cultivars tested, representing three types of rice cultivar, Tarom and Kohsar (early maturity cultivars, Shirodi and Fajr (medium maturity cultivars, Neda and Nemat (late maturity cultivar. Rice seedlings were transplanted at 25 cm planting distance in a 3 m x 9 m plot size. Weeding and fertilization were done as recommended. No insecticide was applied. Dead hearts and white heads were

  14. Seasonal CH4 and N2O emissions and plant growth characteristics of several cultivars in direct seeded rice systems

    Science.gov (United States)

    Simmonds, M.; Anders, M. M.; Adviento-Borbe, M. A.; Van Kessel, C.; McClung, A.; Linquist, B.

    2014-12-01

    Understanding cultivar effects on field greenhouse gas (GHG) emissions in rice (Oryza sativa L.) systems is needed to improve the accuracy of predictive models used for estimating GHG emissions, and to determine to what extent choice of cultivar may have on GHG mitigation. We compared CH4 and N2O emissions, global warming potential (GWP = N2O + CH4), yield-scaled GWP (GWPY = GWP Mg-1 grain), and plant growth characteristics of 8 cultivars within 4 study sites in California and Arkansas. Seasonal CH4 emissions differed between cultivars by a factor of 2.1 and 1.3 at one California and one Arkansas site, respectively. Nitrous oxide emissions were negligible, comprised food security.

  15. Metabolite profiles of rice cultivars containing bacterial blight-resistant genes are distinctive from susceptible rice

    Institute of Scientific and Technical Information of China (English)

    Jiao Wu; Haichuan Yu; Haofu Dai; Wenli Mei; Xin Huang; Shuifang Zhu; Ming Peng

    2012-01-01

    The metabolic changes of bacterial blight-resistant line C418/Xa23 generated by molecular marker-assisted selection (n =12),transgenic variety C418-Xa21 generated by using the Agrobacterium-mediated system (n =12),and progenitor cultivar C418 (n =12) were monitored using gas chromatography/mass spectrometry.The validation,discrimination,and establishment of correlative relationships between metabolite signals were performed by cluster analysis,principal component analysis,and partial least squares-discriminant analysis.Significant and unintended changes were observed in 154 components in C418/Xa23 and 48 components in C418-Xa21 compared with C418 (P < 0.05,Fold change > 2.0).The most significant decreases detected (P< 0.001) in both C418/Xa23 and C418-Xa21 were in three amino acids: glycine,tyrosine,and alanine,and four identified metabolites: malic acid,ferulic acid,succinic acid,and glycerol.Linoleic acid was increased specifically in C418/Xa23 which was derived from traditional breeding.This line,possessing a distinctive metabolite profile as a positive control,shows more differences vs.the parental than the transgenic line.Only succinic acid that falls outside the boundaries of natural variability between the two non-transgenic varieties C418 and C418/Xa23 should be further investigated with respect to safety or nutritional impact.

  16. The cadmium and lead content of the grain produced by leading Chinese rice cultivars.

    Science.gov (United States)

    Xie, L H; Tang, S Q; Wei, X J; Shao, G N; Jiao, G A; Sheng, Z H; Luo, J; Hu, P S

    2017-02-15

    The cadmium (Cd) and lead (Pb) content in both white and wholemeal flour milled from 110 leading rice cultivars was assessed. The white flour Cd content ranged from <0.0025 to 0.2530mg/kg (geometric mean (GM)=0.0150mg/kg), while its Pb content ranged from <0.0250 to 0.3830mg/kg (GM=0.0210mg/kg). The indica types took up higher amounts of Cd and Pb than did the japonica types. Although the heavy metal content of wholemeal flour tended to higher than that of white flour, nevertheless 84.5% (Cd) and 95.4% (Pb) of the entries were compliant with the national maximum allowable concentration of 0.2000mg/kg of each contaminant. An analysis of the Cd content in the white flour of three indica type cultivars grown in two consecutive years at two locations indicated that Cd content may be significantly affected by the conditions prevailing in the growing season. Copyright © 2016 Elsevier Ltd. All rights reserved.

  17. Rice varieties in relation to rice bread quality.

    Science.gov (United States)

    Han, Hye Min; Cho, Jun Hyeon; Kang, Hang Won; Koh, Bong Kyung

    2012-05-01

    It is difficult to predict rice bread quality only from the amylose content (AC) or dough characteristics of new lines produced by rice breeding programmes. This study investigated the AC relative to bread baking quality of rice varieties developed in Korea, and identified specific characteristics that contribute to rice bread quality. Manmibyeo, Jinsumi, Seolgaeng and Hanareumbyeo were classified as low AC, YR24088 Acp9, Suweon517, Chenmaai and Goamibyeo as intermediate AC and Milyang261 as high AC. Suweon517, Milyang261 and Manmibyeo had a high water absorption index (WAI), while Goamibyeo, YR24088 Acp9, Jinsumi, Seolgaeng, Hanareumbyeo and Chenmaai had a low WAI. The gelatinisation enthalpy of flour varied from 9.2 J g(-1) in Milyang261 to 14.8 J g(-1) in YR24088 Acp9. After 7 days of storage the rate of flour retrogradation and crumb firmness were weakly correlated, with the exception of Jinsumi. Bread volumes of Jinsumi, Chenmaai, YR24088 Acp9 and Goamibyeo were comparable to that of wheat flour, but the rest were unsuited to bread making because of their low volume and hard crumb texture. Based on volume, texture and crumb firmness ratio, Chenmaai and Goamibyeo were the most appropriate varieties for making bread. An intermediate AC and low WAI were the primary indicators of rice bread flour quality. Copyright © 2011 Society of Chemical Industry.

  18. Isolation and characterization of plant growth promoting endophytic diazotrophic bacteria from Korean rice cultivars.

    Science.gov (United States)

    Ji, Sang Hye; Gururani, Mayank Anand; Chun, Se-Chul

    2014-01-20

    We have isolated 576 endophytic bacteria from the leaves, stems, and roots of 10 rice cultivars and identified 12 of them as diazotrophic bacteria using a specific primer set of nif gene. Through 16S rDNA sequence analysis, nifH genes were confirmed in the two species of Penibacillus, three species of Microbacterium, three Bacillus species, and four species of Klebsiella. Rice seeds treated with these plant growth-promoting bacteria (PGPB) showed improved plant growth, increased height and dry weight and antagonistic effects against fungal pathogens. In addition, auxin and siderophore producing ability, and phosphate solubilizing activity were studied for the possible mechanisms of plant growth promotion. Among 12 isolates tested, 10 strains have shown higher auxin producing activity, 6 isolates were confirmed as strains with high siderophore producing activity while 4 isolates turned out to have high phosphate-solubilizing activity. These results strongly suggest that the endophytic diazotrophic bacteria characterized in this study could be successfully used to promote plant growth and inducing fungal resistance in plants. Copyright © 2013 Elsevier GmbH. All rights reserved.

  19. Influence and interaction of iron and cadmium on photosynthesis and antioxidative enzymes in two rice cultivars.

    Science.gov (United States)

    Liu, Houjun; Zhang, Chengxin; Wang, Junmei; Zhou, Chongjun; Feng, Huan; Mahajan, Manoj D; Han, Xiaori

    2017-03-01

    In this study, a soil pot experiment was conducted to investigate the changes in photosynthesis and antioxidative enzymes in two rice varieties (Shendao 6 and Shennong 265) supplied with iron (Fe), cadmium (Cd), and Fe and Cd together. The concentrations of Fe and Cd in the soil were 0, 1.0 g Fe·kg -1 and 0, 2.0 mg Cd·kg -1 , respectively. Photosynthetic indices and antioxidative enzyme activities were recorded at different rice growth stages. At the early stage, Cd showed a transient stimulatory effect on the photosynthetic rate of Shennong 265. For Shendao 6, however, Cd showed a transient stimulatory effect on photosynthetic rate, intercellular CO 2 concentration, stomatal conductance and transpiration efficiency. In addition, the results show that Cd can also enhance the superoxide dismutase (SOD) and peroxidase (POD) activities, but reduce the malondialdehyde (MDA) and soluble protein contents in the two rice cultivars. Subsequently, Cd starts to inhibit photosynthesis and SOD activity until the ripening stage, causing the lowest photosynthetic rate and SOD activity at this stage. In contrast, Fe alleviates the Cd-induced changes at earlier or later growth stage. Notably at the later growth stage, the results show that the interaction between Fe and Cd increases the SOD and catalase (CAT) activities, while decreasing the lipid peroxidation and promoting photosynthesis. As a result, it ultimately increases the biomass. The results from this study suggest that Fe (as Fe fertilizer) is a promising alternative for agricultural use to enhance the plant development and, simultaneously, to reduce Cd toxicity in extensively polluted soils. Copyright © 2016 Elsevier Ltd. All rights reserved.

  20. Preliminary report on the rice blast resistance of space-induced mutants derived from rice cultivar 'Taihang-68'

    International Nuclear Information System (INIS)

    Zhang Jingxin; Sun Dayuan; Wang Hui; Liu Yongzhu; Guo Tao; Chen Zhiqiang; Yang Qiyun; Zhu Xiaoyuan

    2012-01-01

    To screen the blast resistance mutants, the resistance of SP 1 progenies derived from rice variety Taihang-68 were evaluated after satellite flight by representative blast isolate GD0193 which had a broad pathogenic spectra, and then primary genetic analysis of resistant mutants and mapping of resistance gene, as well as resistance spectra at seedling and neck blast resistance at maturity were performed. The results showed that space-mutation was effective method to change the blast resistance of Taihang-68. The screened resistant mutants TH1 and TH2 showed that resistance to isolate GD0193 no disjunction and separation respectively, and the resistance separation ratio of TH2 indicated that its resistance was controlled by one pair of major genes, which was preliminary mapped on the long arm of chromosome 11. In blast resistance spectra and neck blast resistance, TH1 and TH2 were both enhanced remarkable compared with the wild-type at seedling and maturity, and their resistance could be inherited, the blast resistance of these two mutants were also increased comparing with several main cultivars in South China. (authors)

  1. Induction of bacterial blight resistance in elite Indian rice cultivars using gamma-rays and ethyl methanesulfonate

    International Nuclear Information System (INIS)

    Agrawal, P.K.; Gosal, S.S.; Sidhu, G.S.

    2001-01-01

    Rice is the most important cereal crop in the world feeding more than 50 percent of the human population. During the last 30 years, induced mutation breeding has played a significant role in rice breeding programmes. Rice mutants with higher yield, greater tolerance to diseases and pests and other agronomic qualities have been released for commercial cultivation in many countries. Bacterial blight (BB) caused by Xanthomonas oryzae pv. oryzae is the second important disease in Southeast Asia. In the Basmati field sometime the yield loss is up to 100%. Moreover, there is no resistance source available. In Basmati rice, which is known for its quality and aroma. Induction of bacterial blight resistance in Basmati will help in developing high yielding Basmati type cultivars without compromising the quality

  2. Introgression from cultivated rice alters genetic structures of wild relative populations: implications for in situ conservation

    Science.gov (United States)

    Jin, Xin; Chen, Yu; Liu, Ping; Li, Chen; Cai, Xingxing; Rong, Jun

    2018-01-01

    Abstract Maintaining genetic integrity is essential for in situ and ex situ conservation of crop wild relative (CWR) species. However, introgression of crop alleles into CWR species/populations may change their genetic structure and diversity, resulting in more invasive weeds or, in contrast, the extinction of endangered populations. To determine crop-wild introgression and its consequences, we examined the genetic structure and diversity of six wild rice (Oryza rufipogon) populations under in situ conservation in China. Thirty-four simple sequence repeat (SSR) and 34 insertion/deletion markers were used to genotype the wild rice populations and two sets of rice cultivars (O. sativa), corresponding to the two types of molecular markers. Shared alleles and STRUCTURE analyses suggested a variable level of crop-wild introgression and admixture. Principal coordinates and cluster analyses indicated differentiation of wild rice populations, which was associated with the spatial distances to cultivated rice fields. The level of overall genetic diversity was comparable between wild rice populations and rice cultivars, but a great number of wild-specific alleles was detected in the wild populations. We conclude based on the results that crop-wild introgression can considerably alter the pattern of genetic structure and relationships of CWR populations. Appropriate measures should be taken for effective in situ conservation of CWR species under the scenario of crop-wild introgression. PMID:29308123

  3. Genealogy of wine grape cultivars: "Pinot" is related to "Syrah".

    Science.gov (United States)

    Vouillamoz, J F; Grando, M S

    2006-08-01

    Since the domestication of wild grapes ca 6000 years ago, numerous cultivars have been generated by spontaneous or deliberate crosses, and up to 10 000 are still in existence today. Just as in human paternity analysis, DNA typing can reveal unexpected parentage of grape cultivars. In this study, we have analysed 89 grape cultivars with 60 microsatellite markers in order to accurately calculate the identity-by-descent (IBD) and relatedness (r) coefficients among six putatively related cultivars from France ("Pinot", "Syrah" and "Dureza") and northern Italy ("Teroldego", "Lagrein" and "Marzemino"). Using a recently developed likelihood-based approach to analyse kinship in grapes, we provide the first evidence of a genetic link between grapes across the Alps: "Dureza" and "Teroldego" turn out to be full-siblings (FS). For the first time in grapevine genetics we were able to detect FS without knowing one of the parents and identify unexpected second-degree relatives. We reconstructed the most likely pedigree that revealed a third-degree relationship between the worldwide-cultivated "Pinot" from Burgundy and "Syrah" from the Rhone Valley. Our finding was totally unsuspected by classical ampelography and it challenges the commonly assumed independent origins of these grape cultivars. Our results and this new approach in grape genetics will (a) help grape breeders to avoid choosing closely related varieties for new crosses, (b) provide pedigrees of cultivars in order to detect inheritance of disease-resistance genes and (c) open the way for future discoveries of first- and second-degree relationships between grape cultivars in order to better understand viticultural migrations.

  4. Polyamine biosynthesis in rice cultivars under salt stress and comparison with observations under drought stress

    Directory of Open Access Journals (Sweden)

    Phuc Thi Do

    2014-05-01

    Full Text Available Soil salinity affects a large proportion of rural area and limits agricultural productivity. To investigate differential adaptation to soil salinity, we studied salt tolerance of 18 varieties of Oryza sativa using a hydroponic culture system. Based on visual inspection and photosynthetic parameters, cultivars were classified according to their tolerance level. Additionally, biomass parameters were correlated with salt tolerance. Polyamines have frequently been demonstrated to be involved in plant stress responses and therefore soluble leaf polyamines were measured. Under salinity, putrescine (Put content was unchanged or increased in tolerant, while dropped in sensitive cultivars. Spermidine (Spd content was unchanged at lower NaCl concentrations in all, while reduced at 100 mM NaCl in sensitive cultivars. Spermine (Spm content was increased in all cultivars. A comparison with data from 21 cultivars under long-term, moderate drought stress revealed an increase of Spm under both stress conditions. While Spm became the most prominent polyamine under drought, levels of all three polyamines were relatively similar under salt stress. Put levels were reduced under both, drought and salt stress, while changes in Spd were different under drought (decrease or salt (unchanged conditions. Regulation of polyamine metabolism at the transcript level during exposure to salinity was studied for genes encoding enzymes involved in the biosynthesis of polyamines and compared to expression under drought stress. Based on expression profiles, investigated genes were divided into generally stress-induced genes (ADC2, SPD/SPM2, SPD/SPM3, one generally stress-repressed gene (ADC1, constitutively expressed genes (CPA1, CPA2, CPA4, SAMDC1, SPD/SPM1, specifically drought-induced genes (SAMDC2, AIH, one specifically drought-repressed gene (CPA3 and one specifically salt-stress repressed gene (SAMDC4, revealing both overlapping and specific stress responses under these

  5. Induction of resistance to blast disease in an elite rice cultivar 'IR 50'

    International Nuclear Information System (INIS)

    Sarma, N.P.; Rao, G.J.N.; Row, K.V.S.R.K.

    2001-01-01

    to total susceptibility of the parent to the disease. The mutants were tested at different 'hot spot' locations of blast like Hazaribag in Bihar, Maruteru in Andhra Pradesh and Jagdalpur in Madhya Pradesh. In addition, they were also screened under greenhouse conditions at the Directorate of Rice Research, Hyderabad. Experimental data from all these centers support the earlier finding that variation for tolerance to blast exist in these mutant lines. The relatively highly tolerant mutant lines were further evaluated under artificial screening at CRRI and highly tolerant individual plants with individual scores of 1 and 2 as against the parent variety score of 7 to 9 (in the IRRI disease score scale of 1 to 9) were selected. After seed multiplication, yield evaluation trials were conducted on fourteen different individual plant derived lines. The field evaluation data on the selected fourteen mutant lines i.e. CRM 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54 and 58) indicate that all these mutant lines yielded either at par or higher than the parent. The mutants were further tested for their suitability in the replacement of the parent variety in the State of Assam. In the yield evaluation and adaptation trials conducted at Kokilabari Farm, Assam, the mutants performed consistently with a yield of over 3 t/ha. Further evaluation of CRM mutant lines over a four year period at Regional Agricultural Research Station, Assam Agricultural University, Diphu, Assam revealed that three mutant selections, i.e. CRM 49, 51 and 53, consistently yielded double that of the parent (2.5t/ha in comparison to 1.25t/ha for parent). Further, in the trials conducted at Zonal Agricultural Research Station of Indira Gandhi Krishi Viswa Vidyalaya, Jagdalpur, the CRM mutants performed well for both yield and the disease scores. Based on the performance of these mutants, the Government of Assam is proposing the release of three mutants namely, CRM 49, 51 and 53 and wishes to replace the

  6. Cultivars

    Directory of Open Access Journals (Sweden)

    Oleg Blum

    2011-01-01

    Full Text Available Some modern agrochemicals with antioxidant potential were tested for their protective effect against ozone injury using clover and tobacco ozone-sensitive cultivars as model plants subjected to ambient ozone at two sites (Kyiv city in Ukraine and Szarów village in Poland. All used agrochemicals showed partial protective effects against ozone injury on clover and tobacco. Conducted studies confirmed the effectiveness of modern fungicides belonging to strobilurin group as protectants of sensitive crops against ozone damage. The effectiveness of new growth regulators “Emistym C” and “Agrostymulin” was showed for the first time. Out of the studied agrochemicals, fungicide “Strobi” and natural growth regulator “Emistym C” demonstrated the best protective effects. These agrochemicals present promise for further studies of their possible utilization for enhancement of ozone tolerance of sensitive crops.

  7. Enzyme expression in indica and japonica rice cultivars under saline stress=Expressão de enzimas em cultivares de arroz indica e japonica sob estresse salino

    Directory of Open Access Journals (Sweden)

    Cristina Rodrigues Mendes

    2012-10-01

    Full Text Available The southern State of Rio Grande do Sul (RS is the main rice producer in Brazil with a 60% participation of the national production and 86% participation of the region. Rice culture irrigation system is done by flooding, which leads to soil salinization, a major environmental constraint to production since it alters the plants’ metabolism exposed to this type of stress. The indica cultivar, widely used in RS, has a higher sensitivity to salinity when compared to that of the japonica cultivar in other physiological aspects. Current research analyzes enzymes expression involved in salt-subjected indica and japonica rice cultivars’ respiration. Oryza sativa L. spp. japonica S.Kato (BRS Bojuru, IAS 12-9 Formosa and Goyakuman and Oryza sativa L. spp. indica S. Kato (BRS Taim-7, BRS Atalanta and BRS Querencia were the cultivars employed. Seedlings were transferred to 15 L basins containing 50% Hoagland nutrient solution increased by 0, 25, 50, 75 and 100 mM NaCl, and collected at 14, 28 and 42 days after transfer (DAT. Plant tissues were macerated and placed in eppendorf tubes with Scandálios extractor solution. Electrophoresis was performed in 7% of the polyacrylamide gels in vertical vats. Bands were revealed for the following enzymes systems: esterase, alcohol dehydrogenase, phosphoglucoisomerase, malate dehydrogenase, malic enzyme and alpha amylase. The enzymes expression was greater in subspecies japonica, with more intense bands in proportion to salinity increase. Results show that enzyme systems are involved in the salinity defense mechanisms in O. sativa spp. japonica cultivar.O Estado do Rio Grande do Sul (RS destaca-se como principal produtor de arroz, participando com 60% da produção nacional e 86% da regional. O sistema de irrigação da cultura é por inundação, que induz o solo à salinização, um dos maiores limitadores ambientais à produção, alterando o metabolismo da plantas expostas a este tipo de estresse. As cultivares

  8. Metagenomic of Actinomycetes Based on 16S rRNA and nifH Genes in Soil and Roots of Four Indonesian Rice Cultivars Using PCR-DGGE

    Directory of Open Access Journals (Sweden)

    Mahyarudin

    2015-07-01

    Full Text Available The research was conducted to study the metagenomic of actinomycetes based on 16S ribosomal RNA (rRNA and bacterial nifH genes in soil and roots of four rice cultivars. The denaturing gradient gel electrophoresis profile based on 16S rRNA gene showed that the diversity of actinomycetes in roots was higher than soil samples. The profile also showed that the diversity of actinomycetes was similar in four varieties of rice plant and three types of agroecosystem. The profile was partially sequenced and compared to GenBank database indicating their identity with closely related microbes. The blast results showed that 17 bands were closely related ranging from 93% to 100% of maximum identity with five genera of actinomycetes, which is Geodermatophilus, Actinokineospora, Actinoplanes, Streptomyces and Kocuria. Our study found that Streptomyces species in soil and roots of rice plants were more varied than other genera, with a dominance of Streptomyces alboniger and Streptomyces acidiscabies in almost all the samples. Bacterial community analyses based on nifH gene denaturing gradient gel electrophoresis showed that diversity of bacteria in soils which have nifH gene was higher than that in rice plant roots. The profile also showed that the diversity of those bacteria was similar in four varieties of rice plant and three types of agroecosystem. Five bands were closely related with nifH gene from uncultured bacterium clone J50, uncultured bacterium clone clod-38, and uncultured bacterium clone BG2.37 with maximum identity 99%, 98%, and 92%, respectively. The diversity analysis based on 16S rRNA gene differed from nifH gene and may not correlate with each other. The findings indicated the diversity of actinomycetes and several bacterial genomes analyzed here have an ability to fix nitrogen in soil and roots of rice plant.

  9. Relative abundance of Delta(5)-sterols in plasma membrane lipids of root-tip cells correlates with aluminum tolerance of rice.

    Science.gov (United States)

    Khan, M Shahadat Hossain; Tawaraya, Keitarou; Sekimoto, Hiroshi; Koyama, Hiroyuki; Kobayashi, Yuriko; Murayama, Tetsuya; Chuba, Masaru; Kambayashi, Mihoko; Shiono, Yoshihito; Uemura, Matsuo; Ishikawa, Satoru; Wagatsuma, Tadao

    2009-01-01

    We investigated variations in aluminum (Al) tolerance among rice plants, using ancestor cultivars from the family line of the Al-tolerant and widely cultivated Japonica cultivar, Sasanishiki. The cultivar Rikuu-20 was Al sensitive, whereas a closely related cultivar that is a descendant of Rikuu-20, Rikuu-132, was Al tolerant. These two cultivars were compared to determine mechanisms underlying variations in Al tolerance. The sensitive cultivar Rikuu-20 showed increased permeability of the plasma membrane (PM) and greater Al uptake within 1 h of Al treatment. This could not be explained by organic acid release. Lipid composition of the PM differed between these cultivars, and may account for the difference in Al tolerance. The tolerant cultivar Rikuu-132 had a lower ratio of phospholipids to Delta(5)-sterols than the sensitive cultivar Rikuu-20, suggesting that the PM of Rikuu-132 is less negatively charged and less permeabilized than that of Rikuu-20. We used inhibitors of Delta(5)-sterol synthesis to alter the ratio of phospholipids to Delta(5)-sterols in both cultivars. These inhibitors reduced Al tolerance in Rikuu-132 and its Al-tolerant ancestor cultivars Kamenoo and Kyoku. In addition, Rikuu-132 showed a similar level of Al sensitivity when the ratio of phospholipids to Delta(5)-sterols was increased to match that of Rikuu-20 after treatment with uniconazole-P, an inhibitor of obtusifoliol-14alpha-demethylase. These results indicate that PM lipid composition is a factor underlying variations in Al tolerance among rice cultivars.

  10. Mapping and pyramiding of two major genes for resistance to the brown planthopper (Nilaparvata lugens [Stål]) in the rice cultivar ADR52.

    Science.gov (United States)

    Myint, Khin Khin Marlar; Fujita, Daisuke; Matsumura, Masaya; Sonoda, Tomohiro; Yoshimura, Atsushi; Yasui, Hideshi

    2012-02-01

    The brown planthopper (BPH), Nilaparvata lugens (Stål), is one of the most serious and destructive pests of rice, and can be found throughout the rice-growing areas of Asia. To date, more than 24 major BPH-resistance genes have been reported in several Oryza sativa ssp. indica cultivars and wild relatives. Here, we report the genetic basis of the high level of BPH resistance derived from an Indian rice cultivar, ADR52, which was previously identified as resistant to the whitebacked planthopper (Sogatella furcifera [Horváth]). An F(2) population derived from a cross between ADR52 and a susceptible cultivar, Taichung 65 (T65), was used for quantitative trait locus (QTL) analysis. Antibiosis testing showed that multiple loci controlled the high level of BPH resistance in this F(2) population. Further linkage analysis using backcross populations resulted in the identification of BPH-resistance (antibiosis) gene loci from ADR52. BPH25 co-segregated with marker S00310 on the distal end of the short arm of chromosome 6, and BPH26 co-segregated with marker RM5479 on the long arm of chromosome 12. To characterize the virulence of the most recently migrated BPH strain in Japan, preliminary near-isogenic lines (pre-NILs) and a preliminary pyramided line (pre-PYL) carrying BPH25 and BPH26 were evaluated. Although both pre-NILs were susceptible to the virulent BPH strain, the pre-PYL exhibited a high level of resistance. The pyramiding of resistance genes is therefore likely to be effective for increasing the durability of resistance against the new virulent BPH strain in Japan.

  11. Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions.

    Science.gov (United States)

    Singh, Kamal Krishna; Ghosh, Shilpi

    2013-02-01

    KEY MESSAGE : The regulation of GS isoforms by WD was organ specific. Two GS isoforms i.e. OsGS1;1 and OsGS2 were differentially regulated in IR-64 (drought-sensitive) and Khitish (drought-tolerant) cultivars of rice. Water deficit (WD) has adverse effect on rice (Oryza sativa L.) and acclimation requires essential reactions of primary metabolism to continue. Rice plants utilize ammonium as major nitrogen source, which is assimilated into glutamine by the reaction of Glutamine synthetase (GS, EC 6.3.1.2). Rice plants possess one gene (OsGS2) for chloroplastic GS2 and three genes (OsGS1;1, OsGS1;2 and OsGS1;3) for cytosolic GS1. Here, we report the effect of WD on regulation of GS isoforms in drought-sensitive (cv. IR-64) and drought-tolerant (cv. Khitish) rice cultivars. Under WD, total GS activity in root and leaf decreased significantly in IR-64 seedlings in comparison to Khitish seedlings. The reduced GS activity in IR-64 leaf was mainly due to decrease in GS2 activity, which correlated with decrease in corresponding transcript and polypeptide contents. GS1 transcript and polypeptide accumulated in leaf during WD, however, GS1 activity was maintained at a constant level. Total GS activity in stem of both the varieties was insensitive to WD. Among GS1 genes, OsGS1;1 expression was differently regulated by WD in the two rice varieties. Its transcript accumulated more abundantly in IR-64 leaf than in Khitish leaf. Following WD, OsGS1;1 mRNA level in stem and root tissues declined in IR-64 and enhanced in Khitish. A steady OsGS1;2 expression patterns were noted in leaf, stem and root of both the cultivars. Results suggest that OsGS2 and OsGS1;1 expression may contribute to drought tolerance of Khitish cultivar under WD conditions.

  12. Selection of drought tolerant and high water use efficient rice cultivars through /sup 13/C isotope discrimination technique

    International Nuclear Information System (INIS)

    Akhtar, J.; Sabir, S.A.; Ashraf, M.Y.; Monneveux, P.; Serraj, R.

    2010-01-01

    Carbon isotope discrimination ('A') has been suggested as an indirect tool for selecting plants having higher water use efficiency (WUE) and yield potential. Enhancing WUE is an important breeding objective as water scarcity is increasing with every passing day. This study was undertaken to assess the genotypic variation and relationship between leaf, straw, grain 'A', grain yield and WUE in eight aromatic rice cultivars grown in lysimeters under three water regimes, in absence of drainage and runoff. Highly significant positive correlations were found between aboveground biomass and WUEB, and grain yield and WUEG, due to the low variation in water consumed by different cultivars. Leaf, straw and grain A showed a consistent variation across treatments and cultivars. Under water stress conditions, both leaf and straw 'A' were positively correlated to grain yield and WUEG. In all the water treatments, WUEG was positively correlated to harvest index and negatively to plant height. All the mutants from Basmati 385 had significantly higher 'A' values as compared to the mutants from Basmati 370. It was concluded that the new cultivar, Basmati 385, represents a better genetic source for 'A' improvement than the old cultivar, Basmati 370. (author)

  13. Examination of two lowland rice cultivars reveals that gibberellin-dependent early response to submergence is not necessarily mediated by ethylene.

    Science.gov (United States)

    Dubois, Vincent; Moritz, Thomas; García-Martínez, José L

    2011-01-01

    Using two lowland rice (Oryza sativa L.) cultivars we found that in both cases submerged-induced elongation early after germination depends on gibberellins (GAs). Submergence increases the content of the active GA 1 by enhancing the expression of GA biosynthesis genes, thus facilitating the seedlings to escape from the water and preventing asphyxiation. However, the two cultivars differ in their response to ethylene. The cultivar Senia (short), by contrast to cultivar Bomba (tall), does not elongate after ethylene application, and submerged-induced elongation is not negated by an inhibitor of ethylene perception. Also, while ethylene emanation in Senia is not altered by submergence, Bomba seedlings emanate more ethylene upon de-submergence, associated with enhanced expression of the ethylene biosynthesis gene OsACS5. The cultivar Senia thus allows the possibility of clarifying the role of ethylene and other factors as triggers of GA biosynthesis enhancement in rice seedlings under submergence.

  14. Identification of transcription factors potential related to brown planthopper resistance in rice via microarray expression profiling

    Directory of Open Access Journals (Sweden)

    Wang Yubing

    2012-12-01

    Full Text Available Abstract Background Brown planthopper (BPH, Nilaparvata lugens Stål, is one of the most destructive insect pests of rice. The molecular responses of plants to sucking insects resemble responses to pathogen infection. However, the molecular mechanism of BPH-resistance in rice remains unclear. Transcription factors (TF are up-stream regulators of various genes that bind to specific DNA sequences, thereby controlling the transcription from DNA to mRNA. They are key regulators for transcriptional expression in biological processes, and are probably involved in the BPH-induced pathways in resistant rice varieties. Results We conducted a microarray experiment to analyze TF genes related to BPH resistance in a Sri Lankan rice cultivar, Rathu Heenati (RHT. We compared the expression profiles of TF genes in RHT with those of the susceptible rice cultivar Taichun Native 1 (TN1. We detected 2038 TF genes showing differential expression signals between the two rice varieties. Of these, 442 TF genes were probably related to BPH-induced resistance in RHT and TN1, and 229 may be related to constitutive resistance only in RHT. These genes showed a fold change (FC of more than 2.0 (P10, there were 37 induced TF genes and 26 constitutive resistance TF genes. Of these, 13 were probably involved in BPH-induced resistance, and 8 in constitutive resistance to BPH in RHT. Conclusions We explored the molecular mechanism of resistance to BPH in rice by comparing expressions of TF genes between RHT and TN1. We speculate that the level of gene repression, especially for early TF genes, plays an important role in the defense response. The fundamental point of the resistance strategy is that plants protect themselves by reducing their metabolic level to inhibit feeding by BPH and prevent damage from water and nutrient loss. We have selected 21 TF genes related to BPH resistance for further analyses to understand the molecular responses to BPH feeding in rice.

  15. Impact of rice cultivar and organ on elemental composition of phytoliths and the release of bio-available silicon

    Directory of Open Access Journals (Sweden)

    Zimin eLi

    2014-10-01

    Full Text Available The continental bio-cycling of silicon (Si plays a key role in global Si cycle and as such partly controls global carbon (C budget through nutrition of marine and terrestrial biota, accumulation of phytolith-occluded organic carbon (PhytOC and weathering of silicate minerals. Despite the key role of elemental composition of phytoliths on their solubility in soils, the impact of plant cultivar and organ on the elemental composition of phytoliths in Si high-accumulator plants, such as rice (Oryza sativa is not yet fully understood. Here we show that rice cultivar significantly impacts the elemental composition of phytoliths (Si, Al, Fe and C in different organs of the shoot system (grains, sheath, leaf and stem. The amount of occluded OC within phytoliths is affected by contents of Si, Al and Fe in plants, while independent of the element composition of phytoliths. Our data document, for different cultivars, higher bio-available Si release from phytoliths of leaves and sheaths, which are characterized by higher enrichment with Al and Fe (i.e., lower Si/Al and Si/Fe ratios, compared to grains and stems. We indicate that phytolith solubility in soils may be controlled by rice cultivar and type of organs. Our results highlight that the role of the morphology, the hydration rate and the chemical composition in the solubility of phytoliths and the kinetic release of Si in soil solution needs to be studied further. This is central to a better understanding of the impact of soil amendment with different plant organs and cultivars on soil OC stock and on the delivery of dissolved Si as we show that sheath and leaf rice organs are both characterized by higher content of OC occluded in phytolith and higher phytolith solubility compared to grains and stems. Our study shows the importance of studying the impact of the agro-management on the evolution of sinks and sources of Si and C in soils used for Si-high accumulator plants.

  16. Assessing the impact of ambient ozone on growth and yield of a rice (Oryza sativa L.) and a wheat (Triticum aestivum L.) cultivar grown in the Yangtze Delta, China, using three rates of application of ethylenediurea (EDU)

    International Nuclear Information System (INIS)

    Wang Xiaoke; Zheng Qiwei; Yao Fangfang; Chen Zhan; Feng Zhaozhong; Manning, W.J.

    2007-01-01

    Foliar applications of ethylenediurea (abbreviated as EDU) were made at 0, 150, 300 or 450 ppm to field-grown rice and wheat in the Yangtze Delta in China. Rice and wheat responded differently to ambient ozone and EDU applications. For wheat, some growth characteristics, such as yield, seed number per plant, seed set rate and harvest index, increased significantly at 300 ppm EDU treatment, while for rice no parameters measured were statistically different regarding EDU application. The reason may be that the wheat cultivar used may be more sensitive to ozone than the rice cultivar. EDU was effective in demonstrating ozone effects on the wheat cultivar, but not on the rice cultivar. Cultivar sensitivity might be an important consideration when assessing the effects of ambient ozone on plants. - Cultivar sensitivity should be considered when using protective chemical to assess the effects of ambient ozone on plants

  17. Compositional analyses of white, brown and germinated forms of popular Malaysian rice to offer insight into the growing diet-related diseases

    OpenAIRE

    Bilyaminu Abubakar; Hafeez Muhammad Yakasai; Norhasnida Zawawi; Maznah Ismail

    2018-01-01

    Diet-related metabolic diseases, and especially obesity, are metabolic disorders with multifactorial aetiologies. Diet has been a cornerstone in both the aetiology and management of this metabolic disorders. Rice, a staple food for over half of the world's population, could be exploited as part of the solution to check this menace which has been skyrocketing in the last decade. The present study investigated nine forms of rice from three widely grown Malaysian rice cultivars for in vitro and ...

  18. Soil Texture and Cultivar Effects on Rice (Oryza sativa, L. Grain Yield, Yield Components and Water Productivity in Three Water Regimes.

    Directory of Open Access Journals (Sweden)

    Fugen Dou

    Full Text Available The objective of this study was to determine the effects of water regime/soil condition (continuous flooding, saturated, and aerobic, cultivar ('Cocodrie' and 'Rondo', and soil texture (clay and sandy loam on rice grain yield, yield components and water productivity using a greenhouse trial. Rice grain yield was significantly affected by soil texture and the interaction between water regime and cultivar. Significantly higher yield was obtained in continuous flooding than in aerobic and saturated soil conditions but the latter treatments were comparable to each other. For Rondo, its grain yield has decreased with soil water regimes in the order of continuous flooding, saturated and aerobic treatments. The rice grain yield in clay soil was 46% higher than in sandy loam soil averaged across cultivar and water regime. Compared to aerobic condition, saturated and continuous flooding treatments had greater panicle numbers. In addition, panicle number in clay soil was 25% higher than in sandy loam soil. The spikelet number of Cocodrie was 29% greater than that of Rondo, indicating that rice cultivar had greater effect on spikelet number than soil type and water management. Water productivity was significantly affected by the interaction of water regime and cultivar. Compared to sandy loam soil, clay soil was 25% higher in water productivity. Our results indicated that cultivar selection and soil texture are important factors in deciding what water management option to practice.

  19. Identification of heterotic loci associated with yield-related traits in Chinese common wild rice (Oryza rufipogon Griff.).

    Science.gov (United States)

    Luo, Xiaojin; Wu, Shuang; Tian, Feng; Xin, Xiaoyun; Zha, Xiaojun; Dong, Xianxin; Fu, Yongcai; Wang, Xiangkun; Yang, Jinshui; Sun, Chuanqing

    2011-07-01

    Many rice breeding programs have currently reached yield plateaus as a result of limited genetic variability in parental strains. Dongxiang common wild rice (Oryza rufipogon Griff.) is the progenitor of cultivated rice (Oryza sativa L.) and serves as an important gene pool for the genetic improvement of rice cultivars. In this study, heterotic loci (HLs) associated with six yield-related traits were identified in wild and cultivated rice and investigated using a set of 265 introgression lines (ILs) of O. rufipogon Griff. in the background of the Indica high-yielding cultivar Guichao 2 (O. sativa L.). Forty-two HLs were detected by a single point analysis of mid-parent heterosis values from test cross F(1) offspring, and 30 (71.5%) of these HLs showed significantly positive effects, consistent with the superiority shown by the F(1) test cross population in the six yield-related traits under study. Genetic mapping of hsp11, a locus responsible for the number of spikelets per panicle, confirmed the utility of these HLs. The results indicate that favorable HLs capable of improving agronomic traits are available. The identification of HLs between wild rice and cultivated rice could lead to a new strategy for the application of heterosis in rice breeding. Copyright © 2011. Published by Elsevier Ireland Ltd.

  20. Cadmium remobilization from shoot to grain is related to pH of vascular bundle in rice.

    Science.gov (United States)

    Zhang, Bing-Lin; Ouyang, You-Nan; Xu, Jun-Ying; Liu, Ke

    2018-01-01

    The remobilization of cadmium (Cd) from shoots to grain is the key process to determine the Cd accumulation in grain. The apoplastic pH of plants is an important factor and signal in influencing on plant responding to environmental variation and inorganic elements uptake. It is proposed that pH of rice plants responds and influences on Cd remobilization from shoots to grain when rice is exposed to Cd stress. The results of hydroponic experiment showed that: pH of the rice leaf vascular bundles among 3 cultivars was almost increased, pH value of 1 cultivar was slightly increasing when rice plants were treated with Cd. The decrease degree of H + concentration in leaf vascular bundles was different among cultivars. The cultivar with higher decreasing in H + concentration, showed higher Cd transfer efficiency from shoots to grain. The H + concentration of leaf vascular bundles under normal condition was negatively correlated to cadmium accumulation in leaf. Moreover, pH change was related to Cd accumulation in shots and remobilization from shoots to grain. Uncovering the role of pH response is a key component for the understanding Cd uptake and remobilization mechanism for rice production. Copyright © 2017 Elsevier Inc. All rights reserved.

  1. Relative susceptibility of banana cultivars to Xanthomonas ...

    African Journals Online (AJOL)

    STORAGESEVER

    2009-10-19

    Oct 19, 2009 ... African Journal of Biotechnology Vol. 8 (20), pp. 5343-5350, 19 ... and Central Africa. The disease was first reported about. 40 years ago in Ethiopia on Ensete, which is closely related to banana (Yirgou et al., 1968). Outside Ethiopia,. BXW was ... Economic impact of the disease is manifested as result of ...

  2. Tolerância de cultivares de arroz a diferentes níveis de alumínio em solução nutritiva Rice cultivars tolerance to different levels of aluminum in nutrient solution

    Directory of Open Access Journals (Sweden)

    Carlos Eduardo de Oliveira Camargo

    1983-01-01

    relation to their tolerance to aluminum toxicity, at temperature of 25 ± 1°C and 30 ± 1°C using five different aluminum levels in 8.3 liter pots with 330 seedlings/pot, under controlled growth conditions. The tolerance was measured taking into account the root growth in an aluminum-free complete nutrient solution after a previous aluminum treatment. With an excessive amount of Al3+, the primary roots did not grow at all and remained thickened at the tip, showing a typical aluminum injury. In nutrient solutions at a temperature of 25 ± 1°C the rice cultivars IAC-899 and IR-841 were sensitive to the Al3+ concentration of 10mg/l of Al3+; IR-43, IR-45 and IR-8 were sensitive to 20mg/l and the cultivars IR-42 and CICA-4 were sensitive to 40mg/l; IAC-435, IAC-164, Pérola, Batatais, Pratão Precoce, Blue Bonnet, IAC-120, IAC-47, IAC-1246, IAC-25, IAC-165, Pratão, Dou-ado Precoce and CICA-8 showed tolerance to 40mg/l. In nutrient solutions at a temperature of 30 ± 1°C all cultivars presented tolerance to the Al3+ concentrations of 5, 10 and 20mg/l of Al+3. The cultivars Dourado Precoce, CICA-4, IR-42, IR-43, IR-45, IR-8, IAC-899, IR-665-4-5-5 and IR-841 were sensitive to 40mg/l of Al3+. Under the same conditions the following cultivars were considered tolerant to aluminum concentration of 40mg/l: IAC-47, Blue Bonnet, IAC-1246, IAC-164, Pratão, Pratão Precoce, CICA-8, IAC-435, IAC-120, IAC-25, IAC-165, Pérola and Batatais. The rice cultivars under study were ranked into classes of aluminum tolerance: tolerant: IAC-435, IAC-120, IAC-47, IAC-1246, IAC-25, IAC-165, IAC-164, Pérola, Batatais, Pratão Precoce, Blue Bonnet; moderately tolerant: Pratão, Dourado Precoce and CICA-8; and sensitive: CICA-4, IR-42, IR-43, IR-45, IR-8, IAC-899, IR-665-4-5-5 and IR-841.

  3. Release of a new lodging-resistant mutant cultivar produced by gamma-rays in glutinous rice

    International Nuclear Information System (INIS)

    Yamaguchi, Hikoyuki; Igarashi, Isao; Sato, Takeshi

    2001-01-01

    To obtain short culm mutants with lodging resistance, while retaining the other desirable traits, such as an excellent quality of the original variety, dry seeds of a glutinous rice cultivar Mezuru were exposed to gamma-rays. In M3, thirty plants were selected from 4020 plants, based on the short culm length. From the results of the subsequent yield and adaptability tests, a promising mutant line was called by the name of Sakata-Mezuru as a new cultivar in 1996. This mutant variety was mainly characterized by shortening of each internode, especially the lowest internode, and at harvest it was more adaptable to mechanical work due to the lodging resistance than its parent. It was demonstrated that the grain quality of the mutant equals to or slightly surpasses that of the parent. Sakata-Mezuru has been registered in February of 2001 and officially released. (author)

  4. Compositional analyses of white, brown and germinated forms of popular Malaysian rice to offer insight into the growing diet-related diseases

    Directory of Open Access Journals (Sweden)

    Bilyaminu Abubakar

    2018-04-01

    Full Text Available Diet-related metabolic diseases, and especially obesity, are metabolic disorders with multifactorial aetiologies. Diet has been a cornerstone in both the aetiology and management of this metabolic disorders. Rice, a staple food for over half of the world's population, could be exploited as part of the solution to check this menace which has been skyrocketing in the last decade. The present study investigated nine forms of rice from three widely grown Malaysian rice cultivars for in vitro and in vivo (glycaemic index and load properties that could translate clinically into a lower predisposition to diet-related diseases. The germinated brown forms of MRQ 74 and MR 84 rice cultivars had high amylose content percentages (25.7% and 25.0%, high relative percentage antioxidant scavenging abilities of 85.0% and 91.7%, relatively low glycaemic indices (67.6 and 64.3 and glycaemic load (32.3 and 30.1 values, and modest glucose uptake capabilities of 33.69% and 31.25%, respectively. The results show that all things being equal, rice cultivars that are germinated and high in amylose content when compared to their white and low amylose counterparts could translate into a lower predisposition to diet-related diseases from the dietary point of view in individuals who consume this cereal as a staple food. Keywords: Brown rice, Diet-related metabolic diseases, Germinated brown rice, White rice

  5. A New High Yielding and Lodging-Tolerant Rice Cultivar, 'Woncheongbyeo' Mutated from Chucheongbyeo

    International Nuclear Information System (INIS)

    Kang, S.Y.; Shin, I.C.; Lee, Y.I.; Song, H.S.; Lee, S.J.; Kim, D.S.; Lee, G.J.; Cho, Y.C.

    2006-01-01

    'Woncheongbyeo' is a new japonica rice (Oryza sativa L.) cultivar developed by mutation techniques from Chucheongbyeo. Chucheongbyeo seeds were irradiated with 300 Gy gamma ray (83.3 rad/min) emitted from ∨60Co at a radiation facility of the Korea Atomic Energy Research Institute (KAERI) in 1992. Compared to Chucheongbyeo, 'Woncheongbyeo' has a short stature as 64 cm in culm length, resistance to lodging and 3-days-earlier heading date. It has considerably erect pubescent leaf blades and a tough culm with a good canopy architecture

  6. Economics of weed suppressive rice cultivars in flood- and furrow-irrigated systems

    Science.gov (United States)

    Weeds are a major constraint to rice production. In the U.S, weeds in rice are controlled primarily with synthetic herbicides. Intensive herbicide application in rice also has many potential drawbacks, resulting in environmental pollution, human health concerns, and development of weed resistance. B...

  7. Response of the leaf photosynthetic rate to available nitrogen in erect panicle-type rice (Oryza sativa L. cultivar, Shennong265

    Directory of Open Access Journals (Sweden)

    Chihiro Urairi

    2016-07-01

    Full Text Available Increasing the yield of rice per unit area is important because of the demand from the growing human population in Asia. A group of varieties called erect panicle-type rice (EP achieves very high yields under conditions of high nitrogen availability. Little is known, however, regarding the leaf photosynthetic capacity of EP, which may be one of the physiological causes of high yield. We analyzed the factors contributing to leaf photosynthetic rate (Pn and leaf mesophyll anatomy of Nipponbare, Takanari, and Shennong265 (a EP type rice cultivar varieties subjected to different nitrogen treatments. In the field experiment, Pn of Shennong265 was 33.8 μmol m−2 s−1 in the high-N treatment, and was higher than that of the other two cultivars because of its high leaf nitrogen content (LNC and a large number of mesophyll cells between the small vascular bundles per unit length. In Takanari, the relatively high value of Pn (31.5 μmol m−2 s−1 was caused by the high stomatal conductance (gs; .72 mol m−2 s−1 in the high-N treatment. In the pot experiment, the ratio of Pn/Ci to LNC, which may reflect mesophyll conductance (gm, was 20–30% higher in Nipponbare than in Takanari or Shennong265 in the high N availability treatment. The photosynthetic performance of Shennong265 might be improved by introducing the greater ratio of Pn/Ci to LNC found in Nipponbare and greater stomatal conductance found in Takanari.

  8. Dissipation of phenanthrene and pyrene at the aerobic-anaerobic soil interface: differentiation induced by the rhizosphere of PAH-tolerant and PAH-sensitive rice (Oryza sativa L.) cultivars.

    Science.gov (United States)

    He, Yan; Xia, Wen; Li, Xinfeng; Lin, Jiajiang; Wu, Jianjun; Xu, Jianming

    2015-03-01

    A pot experiment was conducted to reveal the removal of two polycyclic aromatic hydrocarbons (PAHs) (phenanthrene, PHE, and pyrene, PYR) during rice cultivation in a paddy field. The rhizosphere effect on facilitating dissipation of PAHs varied simultaneously as a function of soil properties, PAH types, cultivation time, and genotypes within rice cultivars, with differences performed for PYR but not PHE. Changes in soil PLFA profiles evidenced that the growth of rice roots modified the dominant species within rhizosphere microbial communities and induced a selective enrichment of Gram-negative aerobic bacteria capable of degrading, thereby resulting in the differentiated dissipation of PYR. While the insignificant differences in PHE dissipation might be attributed to its higher solubility and availability under flooded condition that concealed the differences in improvement of bioavailability for microorganisms between rhizosphere and non-rhizosphere, and between both soils and both rice cultivars. Our findings illustrate that the removal of PAHs in paddy soils was more complex relative to those in dryland soils. This was possibly due to the specialty of rice roots for oxygen secretion that provides development of redox heterogeneous microbial habitats at root-soil interface under flooded condition.

  9. Single rice growth period was prolonged by cultivars shifts, but yield was damaged by climate change during 1981-2009 in China, and late rice was just opposite.

    Science.gov (United States)

    Tao, Fulu; Zhang, Zhao; Shi, Wenjiao; Liu, Yujie; Xiao, Dengpan; Zhang, Shuai; Zhu, Zhu; Wang, Meng; Liu, Fengshan

    2013-10-01

    Based on the crop trial data during 1981-2009 at 57 agricultural experimental stations across the North Eastern China Plain (NECP) and the middle and lower reaches of Yangtze River (MLRYR), we investigated how major climate variables had changed and how the climate change had affected crop growth and yield in a setting in which agronomic management practices were taken based on actual weather. We found a significant warming trend during rice growing season, and a general decreasing trend in solar radiation (SRD) in the MLRYR during 1981-2009. Rice transplanting, heading, and maturity dates were generally advanced, but the heading and maturity dates of single rice in the MLRYR (YZ_SR) and NECP (NE_SR) were delayed. Climate warming had a negative impact on growth period lengths at about 80% of the investigated stations. Nevertheless, the actual growth period lengths of YZ_SR and NE_SR, as well as the actual length of reproductive growth period (RGP) of early rice in the MLRYR (YZ_ER), were generally prolonged due to adoption of cultivars with longer growth period to obtain higher yield. In contrast, the actual growth period length of late rice in the MLRYR (YZ_LR) was shortened by both climate warming and adoption of early mature cultivars to prevent cold damage and obtain higher yield. During 1981-2009, climate warming and decrease in SRD changed the yield of YZ_ER by -0.59 to 2.4%; climate warming during RGP increased the yield of YZ_LR by 8.38-9.56%; climate warming and decrease in SRD jointly reduced yield of YZ_SR by 7.14-9.68%; climate warming and increase in SRD jointly increased the yield of NE_SR by 1.01-3.29%. Our study suggests that rice production in China has been affected by climate change, yet at the same time changes in varieties continue to be the major factor driving yield and growing period trends. © 2013 John Wiley & Sons Ltd.

  10. Analysis of QTLs for yield-related traits in Yuanjiang common wild rice (Oryza rufipogon Griff.).

    Science.gov (United States)

    Fu, Qiang; Zhang, Peijiang; Tan, Lubin; Zhu, Zuofeng; Ma, Dan; Fu, Yongcai; Zhan, Xinchun; Cai, Hongwei; Sun, Chuanqing

    2010-02-01

    Using an accession of common wild rice (Oryza rufipogon Griff.) collected from Yuanjiang County, Yunnan Province, China, as the donor and an elite cultivar 93-11, widely used in two-line indica hybrid rice production in China, as the recurrent parent, an advanced backcross populations were developed. Through genotyping of 187 SSR markers and investigation of six yield-related traits of two generations (BC(4)F(2) and BC(4)F(4)), a total of 26 QTLs were detected by employing single point analysis and interval mapping in both generations. Of the 26 QTLs, the alleles of 10 (38.5%) QTLs originating from O. rufipogon had shown a beneficial effect for yield-related traits in the 93-11 genetic background. In addition, five QTLs controlling yield and its components were newly identified, indicating that there are potentially novel alleles in Yuanjiang common wild rice. Three regions underling significant QTLs for several yield-related traits were detected on chromosome 1, 7 and 12. The QTL clusters were founded and corresponding agronomic traits of those QTLs showed highly significant correlation, suggesting the pleiotropism or tight linkage. Fine-mapping and cloning of these yield-related QTLs from wild rice would be helpful to elucidating molecular mechanism of rice domestication and rice breeding in the future. Copyright 2010 Institute of Genetics and Developmental Biology and the Genetics Society of China. Published by Elsevier Ltd. All rights reserved.

  11. [Effects of Rice Cultivar and Typical Soil Improvement Measures on the Uptake of Cd in Rice Grains].

    Science.gov (United States)

    Wang, Mei-e; Peng, Chi; Chen, Wei-ping

    2015-11-01

    Cadmium pollution of rice is a big problem in agricultural food safety. The accident "Cd rice" occurred last year in Youxian County, Hunan Province caused serious social panic. In this study, trials on "Cd rice" controlling techniques specific to the Cd pollution in paddy soil in Youxian were investigated. It was suggested that the average Cd contents in rice grains of the rice variety "Zhu Liang You 06" in Datongqiao and Wangling were 0.167 and 0.127 mg x kg(-1), respectively, which were only equal to 20% of the contents of other varieties. The trials for stabilizing agents revealed that treatments of lime and mineral fertilizer decreased Cd contents in rice grains to 20-30% of the control. Plastic film-mulched treatment decreased the rice grain Cd to 50%. And combined treatment of plastic film-mulched and biochar and silicon foliar-fertilizer decreased 80% of rice Cd content. Single treatments of silicon foliar-fertilizer and combined treatment of silicon foliar-fertilizer and topdressing fertilizer decreased more than 90% of Cd content. Results of BCR revealed that the percentage of cationic exchangeable and/or carbonate associated Cd fraction was more than 55% for most of the soil samples. Lime treatment significantly decreased the percentage of cationic exchangeable and/or carbonate and oxides of Fe and Mn associated Cd and increased the crystalline structure of clay minerals associated Cd. The change rate reached about 20%. Our results suggested concentration of soil Cd and pH were the two significant factors impacting the uptake of Cd by rice grains.

  12. Somatic embryogenesis and in-vitro regeneration of rice (Oryza sativa L.) cultivars under one-step and multiple-step salinity stresses

    DEFF Research Database (Denmark)

    Khattak, Mohammad S. K.; Abiri, Rambod; Valdiani, Alireza

    2017-01-01

    The present study aimed to examine the effect of one-step and multiple-step salinity stress on the somatic embryogenesis of rice cultivars within the solid and liquid (cell suspension) culture media conditions. Five rice cultivars, including Puteh Perak, Mahsuri, Basmati-370, Nona Bokra and Khari......, and significant morphological changes were observed. In contrast, the multiple-step NaCl treatment of the calli and cell suspensions led to higher growth of the cultures in the presence of NaCl compared to the controls. The solid MS media, containing 3 μM IAA and 40 μM Kinetin performed as the best media...

  13. Factors affecting variation in CH4 emission from paddy soils grown with different rice cultivars: A pot experiment

    Science.gov (United States)

    Watanabe, Akira; Kimura, Makoto

    1998-08-01

    The growth of rice plants greatly influences CH4 emission from paddy fields through the supply of organic materials such as root exudates and sloughed tissues, the release of oxygen to the root environment, and the transfer of CH4 from the rhizosphere into the atmosphere through the aerenchyma. In the present pot experiments, the effects of the release of water-soluble organic substances from roots, the air space in roots, and the CH4-oxidizing capacity of roots on intervarietal differences in CH4 emission were examined using three Japonica type cultivars (Norin 25, Nipponbare, and Aoinokaze), which differ in morphological properties. The CH4 emission rates varied among the cultivars from mid-July (tillering stage) to the beginning of September (heading stage).Total CH4 emission throughout the rice growth period was largest for Norin 25, followed by Nipponbare, and Aoinokaze. In August, the rate of release of water-soluble organic substances from roots was largest for Norin 25. The air space in roots was also largest in Norin 25 and least in Aoinokaze. The stable carbon isotopic ratios (δ13C) of CH4 in roots were 3-10‰ higher than those in soil in August. The difference in δ13C values of CH4 between roots and soil was largest for Aoinokaze and smallest for Norin 25. In September, the difference in δ13C values of CH4 between roots and soil became small (2-3‰). These findings suggest that the proportion of CH4 oxidation in the rhizosphere was largest in the cultivar which emitted the smallest amount of CH4 and that the proportion became smaller with continued plant growth.

  14. Seed Germination Behaviors Of Some Aerobic Rice Cultivars Oryza Sativa L After Priming With Polyethylene Glycol-8000 Peg-8000

    Directory of Open Access Journals (Sweden)

    Elkheir H.A

    2015-08-01

    Full Text Available Seed Priming Is Famous Technique To Accelerate Seed Germination Behaviors. This Experiment Was Conducted To Study The Effect Of Polyethylene Glycol-8000 Peg-8000 As Priming Agent On Seed Germination Behavior Of Some Aerobic Rice Cultivars Oryza Sativa L. Experiment Was Carried Out By Using Two-Factor Three Aerobic Rice Cultivars And Peg With Four Replications Which Arranged In Factorial System Design And Conducted With Completely Randomized Design. The Factor Was Varieties Which Were Inpago 8 V1 Ir64 V2 And Situbagendit V3 Combine With 4 Levels Of Peg Concentrations 0100 And 200 Gl-1 And Control With No Treatment. Experiment Was Repeated 4 Times So Total Number Of Experimental Units Were 48. Germination Parameters Measured Were Germination Percentage Germination Index Days Of 50 Germination Seedling Fresh Weight Mg Seedling Shoot Fresh Weight And Root Fresh Weight Mg Seedling Dry Weigh Mg Seedling Shoot Dry Weight And Root Dry Weight Mg ShootRoot Ratio Seedling Length Cm Seedling Root Length Cm And Shoot Length Cm And Seed Vigor Index. The Results Indicated That Seed Priming Significantly Affected Germination Behaviors Compared With Control Depending Upon Varieties. The Highest Germination Was Obtained Under Laboratory And Greenhouse Condition By The Treatment Of Peg 200 G L-1 On The Situbagendit And Ir-64 Variety 90.25 And 93.33 Respectively Compared To Control In Inpago-8 In Both Laboratory 75.75 And Greenhouse 80 . As Implementation To Increase Seed And Seedling Vigor Of Rice It Is A Best Practice To Use Peg Priming With 200 Gl-1 Solutions Depend Upon Varietal Response And We Suggest That More Research About The Effect Of Peg As Seed Priming Techniques On Seed Germination Behavior Of Many Grain Crops Is Needed To Confirm The Methodology.

  15. Cultivares de arroz irrigado e nutrientes na água de drenagem em diferentes sistemas de cultivos Irrigated rice cultivars and drainnage water nutrient under differnt managements systems

    Directory of Open Access Journals (Sweden)

    Lauro Weber

    2003-02-01

    components of four irrigated rice cultivars under different management systems, as well as, to measure the concentration of nutrients in the initial drainage water. The research was conducted during the 1998/99 growing season on a lowland area on a PLANOSOIL located at the Federal University of Santa Maria-RS, Brazil. The rice cultivars were IRGA 417, EL PASO 144, BRS TAIM and EPAGRI 108. The management systems were: conventional and minimum tillage and pre-germinated and "mix" of pre-germinated and seedlings transplants. The experimental design was a randomized aplit block with four replications. The conventional and minimum tillage were seeded in November 01st, 1998 and the pre-germinated and mix of pre-germinated and seedlings transplants were estabhished in November 18th, 1998. Seed yield was affected by management system except for the cultivar EL PASO 144 that had the same yield regardless treatments. EPAGRI 108 had the highest average yields, 8349kg ha-1. The highest number of panicles per square meter was observed in the pre-germinated and mix pre-germinated systems. The transplanted seedlings had the highest number of seeds per panicles. Regardless the management systems, EL PASO 144 presented thehighest number of seeds per panicle and EPAGRI 108 the heavier seeds. Nutrient concentration in the initial dreinage water was similar in all systems with average N, P, K, Ca, Mg and Fe concentrations of 5.02, 2.06, 10.33, 6.38, 3.51 and 2.56 mg l-1, respectively.

  16. Eficiência do uso e resposta à aplicação de fósforo de cultivares de arroz em solos de terras altas Use efficiency and response to phosphorus of application rice cultivars in highlands soils

    Directory of Open Access Journals (Sweden)

    Eliane Aparecida Rotili

    2010-01-01

    Full Text Available Objetivou-se com este trabalho estudar a eficiência e resposta quanto ao uso de fósforo de cultivares de arroz em solos de terras altas no sul do Estado de Tocantins. Os tratamentos envolveram seis cultivares comerciais de arroz (BRS-Bonança BRS-Caiapó, BRS-Sertaneja, BRSMG-Curinga, BRSMG-Conai e BRS-Primavera, que foram cultivadas em dois ambientes distintos. Para simular ambientes com baixo e alto nível de fósforo, foram utilizadas as doses 20 e 120 kg ha-1 de P2O5. O delineamento experimental utilizado foi o de blocos casualizados, com quatro repetições. Através da produtividade de grãos, classificaram-se as cultivares quanto à eficiência no uso e resposta à aplicação do fósforo. A cultivar BRS-Bonança foi mais eficiente quanto ao uso de fósforo e responsiva à sua aplicação.This research's objective was to study the efficiency in the usage of phosphorus by rice cultivars in highland soils in the South of Tocantins State. The experiments evaluated six commercial cultivars of rice (BRS-Bonança BRS-Caiapó, BRS-Sertaneja, BRSMG-Curinga, BRSMG-Conai and BRS-Primavera, grown in areas with high and low phosphorus application: 20 and 120 kg ha-1 of P2O5. The experiments were carried out in a completely randomized blocks design, with four replicates. Based on grain yield, cultivars were classified in respect to the efficiency and response to phosphorus fertilization. The cultivar BRS-Bonança presented the highest phosphorus use efficiency and was the most responsive.

  17. Effect of elevated [CO2 ] on yield, intra-plant nutrient dynamics, and grain quality of rice cultivars in Eastern India.

    Science.gov (United States)

    Jena, Usha Rani; Swain, Dillip Kumar; Hazra, K K; Maity, Mrinal K

    2018-05-16

    Climate models predict an increase in global temperature in response to a doubling of atmospheric [CO 2 ] that may impact future rice production and quality. In this study, the effect of elevated [CO 2 ] on yield, nutrient acquisition and utilization, and grain quality of rice genotypes was investigated in subtropical climate of eastern India (Kharagpur). Three environments (open field, ambient, and elevated [CO 2 ]) were tested using four rice cultivars of eastern India. Under elevated [CO 2 ] (25% higher), yield of high yielding cultivars (HYCs) viz. IR 36, Swarna, and Swarna sub1 was significantly reduced (11-13%), whereas the yield increased (6-9%) for Badshabhog, a low-yielding aromatic cultivar. Elevated [CO 2 ] significantly enhanced K uptake (14-21%), but did not influence the uptake of total N and P. The nutrient harvest index and use efficiency values in HYCs were reduced under elevated [CO 2 ] indicating that nutrients translocation from source to sink (grain) was significantly reduced. An increase in alkali spreading value (10%) and reduction in grain protein (2-3%) and iron (5-6%) was also observed upon [CO 2 ] elevation. The study highlights the importance of nutrient management (increasing N rate for HYCs) and selective breeding of tolerant cultivar in minimizing the adverse effect of elevated [CO 2 ] on rice yield and quality. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

  18. Induction of Xa10-like Genes in Rice Cultivar Nipponbare Confers Disease Resistance to Rice Bacterial Blight.

    Science.gov (United States)

    Wang, Jun; Tian, Dongsheng; Gu, Keyu; Yang, Xiaobei; Wang, Lanlan; Zeng, Xuan; Yin, Zhongchao

    2017-06-01

    Bacterial blight of rice, caused by Xanthomonas oryzae pv. oryzae, is one of the most destructive bacterial diseases throughout the major rice-growing regions in the world. The rice disease resistance (R) gene Xa10 confers race-specific disease resistance to X. oryzae pv. oryzae strains that deliver the corresponding transcription activator-like (TAL) effector AvrXa10. Upon bacterial infection, AvrXa10 binds specifically to the effector binding element in the promoter of the R gene and activates its expression. Xa10 encodes an executor R protein that triggers hypersensitive response and activates disease resistance. 'Nipponbare' rice carries two Xa10-like genes in its genome, of which one is the susceptible allele of the Xa23 gene, a Xa10-like TAL effector-dependent executor R gene isolated recently from 'CBB23' rice. However, the function of the two Xa10-like genes in disease resistance to X. oryzae pv. oryzae strains has not been investigated. Here, we designated the two Xa10-like genes as Xa10-Ni and Xa23-Ni and characterized their function for disease resistance to rice bacterial blight. Both Xa10-Ni and Xa23-Ni provided disease resistance to X. oryzae pv. oryzae strains that deliver the matching artificially designed TAL effectors (dTALE). Transgenic rice plants containing Xa10-Ni and Xa23-Ni under the Xa10 promoter provided specific disease resistance to X. oryzae pv. oryzae strains that deliver AvrXa10. Xa10-Ni and Xa23-Ni knock-out mutants abolished dTALE-dependent disease resistance to X. oryzae pv. oryzae. Heterologous expression of Xa10-Ni and Xa23-Ni in Nicotiana benthamiana triggered cell death. The 19-amino-acid residues at the N-terminal regions of XA10 or XA10-Ni are dispensable for their function in inducing cell death in N. benthamiana and the C-terminal regions of XA10, XA10-Ni, and XA23-Ni are interchangeable among each other without affecting their function. Like XA10, both XA10-Ni and XA23-Ni locate to the endoplasmic reticulum (ER) membrane

  19. Pigment and Lovastatin content on the Red Rice cultivar Bah Butong and BP 1804 IF 9 which Fermented by Monascus purpureus Jmba

    Directory of Open Access Journals (Sweden)

    ERNAWATI KASIM

    2006-01-01

    Full Text Available Research on the red rice fermented by Monascus purpureus had been done. The rice consisted of 2 cultivars such as Bah Butong and BP 1804 IF 9. The aim of the research was to know the content of the pigment and lovastatin of the fermentation result/ angkak. Angkak was powdered by using blender. To measure the content of pigment, the powder was extracted by methanol. By using spectrophotometer the content of the pigment could be measured with 390 nm wave lengths for yellow pigment and 500 nm for the red pigment. For lovastatin the powder was extracted by acetonitrile and H2SO4. By using HPLC the content of lovastatin could be measured. The results showed that the highest pigment content for yellow pigment was on the PB 1804 IF 9 cultivar, and red pigment was on the Bah Butong cultivar. The highest lovastatin content was on the BP 1804 IF 9.

  20. Antixenosis and Antibiosis Resistance in Rice Cultivars against Chilo suppressalis (Walker) (Lepidoptera: Crambidae).

    Science.gov (United States)

    Tabari, M A; Fathi, S A A; Nouri-Ganbalani, G; Moumeni, A; Razmjou, J

    2017-08-01

    The striped stem borer, Chilo suppressalis (Walker) (Lepidoptera: Crambidae), is an important pest afflicting rice in most rice-growing countries in the world. Deliniating the categories of resistance in rice genotypes under field conditions could be helpful in managment of this pest. Two categories of resistance, antixenosis and antibiosis, were examined in ten popular and diverse rice genotypes of different origin that had been selected for their resistance to the striped stem borer in a previous study. Significant differences were found between genotypes for the number of egg masses, number of eggs, preference index, larval and pupal weight, larval development time, larval survival rate, larval mine length, and leaf trichome density. It was found that the rice genotypes Novator, A7801, and Nemat had the more pronounced antixenosis-type resistance, whereas AB1 and Shirodi had better antiobiosis-type resistance. Interestingly, the rice genotype AN-74 for which Nemat is the parental line showed both types of resistance and could be effectively used in an integrated pest management of the rice striped stem borer.

  1. Identification of transcription factors potential related to brown planthopper resistance in rice via microarray expression profiling.

    Science.gov (United States)

    Wang, Yubing; Guo, Huimin; Li, Haichao; Zhang, Hao; Miao, Xuexia

    2012-12-10

    Brown planthopper (BPH), Nilaparvata lugens Stål, is one of the most destructive insect pests of rice. The molecular responses of plants to sucking insects resemble responses to pathogen infection. However, the molecular mechanism of BPH-resistance in rice remains unclear. Transcription factors (TF) are up-stream regulators of various genes that bind to specific DNA sequences, thereby controlling the transcription from DNA to mRNA. They are key regulators for transcriptional expression in biological processes, and are probably involved in the BPH-induced pathways in resistant rice varieties. We conducted a microarray experiment to analyze TF genes related to BPH resistance in a Sri Lankan rice cultivar, Rathu Heenati (RHT). We compared the expression profiles of TF genes in RHT with those of the susceptible rice cultivar Taichun Native 1 (TN1). We detected 2038 TF genes showing differential expression signals between the two rice varieties. Of these, 442 TF genes were probably related to BPH-induced resistance in RHT and TN1, and 229 may be related to constitutive resistance only in RHT. These genes showed a fold change (FC) of more than 2.0 (Pgenes related to BPH-induced resistance, most of them were readily induced in TN1 than in RHT by BPH feeding, for instance, 154 TF genes were up-regulated in TN1, but only 31 TF genes were up-regulated in RHT at 24 hours after BPH infestation; 2-4 times more TF genes were induced in TN1 than in RHT by BPH. At an FC threshold of >10, there were 37 induced TF genes and 26 constitutive resistance TF genes. Of these, 13 were probably involved in BPH-induced resistance, and 8 in constitutive resistance to BPH in RHT. We explored the molecular mechanism of resistance to BPH in rice by comparing expressions of TF genes between RHT and TN1. We speculate that the level of gene repression, especially for early TF genes, plays an important role in the defense response. The fundamental point of the resistance strategy is that plants

  2. Identification and Characterization of Differentially Expressed Genes in Inferior and Superior Spikelets of Rice Cultivars with Contrasting Panicle-Compactness and Grain-Filling Properties.

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    Sudhanshu Sekhar

    Full Text Available Breeding programs for increasing spikelet number in rice have resulted in compactness of the panicle, accompanied by poor grain filling in inferior spikelets. Although the inefficient utilization of assimilate has been indicated as responsible for this poor grain filling, the underlying cause remains elusive. The current study utilized the suppression subtractive hybridization technique to identify 57 and 79 genes that overexpressed in the superior and inferior spikelets (with respect to each other, respectively, of the compact-panicle rice cultivar Mahalaxmi. Functional categorization of these differentially expressed genes revealed a marked metabolic difference between the spikelets according to their spatial location on the panicle. The expression of genes encoding seed storage proteins was dominant in inferior spikelets, whereas genes encoding regulatory proteins, such as serine-threonine kinase, zinc finger protein and E3 ligase, were highly expressed in superior spikelets. The expression patterns of these genes in the inferior and superior spikelets of Mahalaxmi were similar to those observed in another compact-panicle cultivar, OR-1918, but differed from those obtained in two lax-panicle cultivars, Upahar and Lalat. The results first suggest that the regulatory proteins abundantly expressed in the superior spikelets of compact-panicle cultivars and in both the superior and inferior spikelets of lax-panicle cultivars but poorly expressed in the inferior spikelets of compact-panicle cultivars promote grain filling. Second, the high expression of seed-storage proteins observed in the inferior spikelets of compact-panicle cultivars appears to inhibit the grain filling process. Third, the low expression of enzymes of the Krebs cycle in inferior spikelets compared with superior spikelets of compact-panicle cultivars is bound to lead to poor ATP generation in the former and consequently limit starch biosynthesis, an ATP-consuming process

  3. Influence of plant species and environmental conditions on epiphytic and endophytic pink-pigmented facultative methylotrophic bacterial populations associated with field-grown rice cultivars.

    Science.gov (United States)

    Madhaiyan, Munusamy; Poonguzhali, Selvaraj; Sa, Tongmin

    2007-10-01

    The total methylotrophic population associated with rice plants from different cultivars was enumerated at three different stages: vegetative, flowering, and harvesting. The bacterial population in the leaf, rhizosphere soil, endophytic in the stem and roots, and epiphytic in the florets and grains were determined from four rice cultivars, Il-mi, Nam-pyeoung, O-dae, and Dong-jin, sampled from three different field sites. The methylotrophic bacteria isolated on AMS media containing 0.5% methanol as the sole carbon source uniformly showed three distinct morphologies, which were recorded as separate groups and their distribution among the various samples was determined using the ecophysiological index. The growth stage at the time of sampling had a more significant effect on the methylotrophic population and their distribution than the field site or cultivar. A similar effect was also observed for the PPFMs, where their population in different plant parts increased from V10 to R4 and then decreased towards stage R9. A canonical discriminant analysis of the PPFM population from different parts of rice showed clear variations among the cultivars, sampled sites, and growth stages, although the variations were more prominent among the growth stages.

  4. Allelopathy of weed extracts on yield and its components in four cultivars of rice (Oryza sativa L.

    Directory of Open Access Journals (Sweden)

    Ali MOHADESI

    2011-07-01

    Full Text Available Weeds are enemies to the crop plants and have harmful effects on agricultural crops due to several factors such as competition for space, light and nutrients. Allelopathic effects of weed extracts were studied on grain yield and yield components of rice. The experiment was carried out in the Rice Research Institute of Chaparsar, in 2006- 2007, in Tonekabon, Iran (latitude 36°54’ N, longitude 50° 40’E, level -20 m altitude, split plot on basis of randomized completely block design (RCBD with 4 replications. Results showed highly significant differences suggesting substantial to moderate phenotypic variability in most parameters evaluated except number of empty grain and 1000 -grain weight. Also, most yield of single plant obtained from umbrella sedge extract (28.5 g. It seems that umbrella sedge had least minerals in water; it could be affected positively on important factors such as yield of single plant compared to other treatments. Correlation coefficient analysis revealed significant and negative correlation between number of empty grain and yield of single plant (r=-0.42***. It’s implies that grain yield magnitude of Nemat cultivar exhibiting the least number of empty grain. Although yield of single plant was not affected neither by plant height nor number of tiller. In addition, irrigation water due to existence of high mineral and chemical pesticides in upstream of station farms severely was reduced yield. Also, results of this research showed that weed extracts haven’t very allelopathic effect on rice and in end of growing season, that’s better, plant leftover return and remain in field.

  5. Effects of water management on arsenic and cadmium speciation and accumulation in an upland rice cultivar.

    Science.gov (United States)

    Hu, Pengjie; Ouyang, Younan; Wu, Longhua; Shen, Libo; Luo, Yongming; Christie, Peter

    2015-01-01

    Pot and field experiments were conducted to investigate the effects of water regimes on the speciation and accumulation of arsenic (As) and cadmium (Cd) in Brazilian upland rice growing in soils polluted with both As and Cd. In the pot experiment constant and intermittent flooding treatments gave 3-16 times higher As concentrations in soil solution than did aerobic conditions but Cd showed the opposite trend. Compared to arsenate, there were more marked changes in the arsenite concentrations in the soil solution as water management shifted, and therefore arsenite concentrations dominated the As speciation and bioavailability in the soil. In the field experiment As concentrations in the rice grains increased from 0.14 to 0.21 mg/kg while Cd concentrations decreased from 0.21 to 0.02 mg/kg with increasing irrigation ranging from aerobic to constantly flooding conditions. Among the various water regimes the conventional irrigation treatment produced the highest rice grain yield of 6.29 tons/ha. The As speciation analysis reveals that the accumulation of dimethylarsinic acid (from 11.3% to 61.7%) made a greater contribution to the increase in total As in brown rice in the intermittent and constant flooding treatments compared to the intermittent-aerobic treatment. Thus, water management exerted opposite effects on Cd and As speciation and bioavailability in the soil and consequently on their accumulation in the upland rice. Special care is required when irrigation regime methods are employed to mitigate the accumulation of metal(loid)s in the grain of rice grown in soils polluted with both As and Cd. Copyright © 2014. Published by Elsevier B.V.

  6. sativa L.) Cultivars

    African Journals Online (AJOL)

    Abstract. Ten rice cultivars from the International Rice Germplasm Centre originating from Bangladesh were analysedfor the~r genetics of resistance to bacterial blight. The test cultivars were selected on the basis of their high level ofresistance to races IV & VI ofXanthomonas oryzae pv. oryzae. The mode ofinheri- tance was ...

  7. Cyclobutyl pyrimidine dimer accumulation in relation to UV-B sensitivity in mung bean cultivars

    International Nuclear Information System (INIS)

    He Junmin; Wang Ruibin; Meng Zhaoni

    2006-01-01

    The purpose of the experiment is to reveal the relationship between cyclobutyl pyrimidine dimers (CPDs) accumulation and UV-B sensitivity in mung bean cultivars. Two mung bean cultivars (Phaseolus raditus L. cv. Qindou -2 0 and Zhonglü -1 ) were grown in greenhouse with treatment or without treatment of UV-B radiation (0.4 W * m -2 ) for four days. The UV-B-induced CPDs in mung bean DNA were quantified by enzyme-linked immunosorbent assay (ELISA) with specific monoclonal antibody and the relationship between CPDs accumulation and the UV-B sensitivity of mung bean seedlings were discussed. The UV-B-induced inhibition of the biomass and net photosynthetic rate of the primary leaves of cultivar Zhonglü -1 were respectively lower than that of cultivar Qindou -2 0, so that the cultivar Zhonglü -1 was more tolerant to UV-B than the cultivar Qindou -2 0. Meanwhile, the cultivar Zhonglü -1 had lower CPD accumulation and susceptibility to CPD induction, higher photorepair capacity and same dark repair capacity as compared with the cultivar Qindou -2 0. Different UV-B sensitivities between two mung bean cultivars may be mainly caused by the differences in CPD accumulation, which are caused by the different susceptibility to CPD induction and the different photorepair capacities. In addition, the different susceptibility to CPD induction between two mung bean cultivars is related to the different levels of UV-absorbing compounds

  8. Comportamento de cultivares de arroz irrigado em relação a fungos manchadores de sementes Performance of lowland rice cultivam to seed discoloration fungi

    Directory of Open Access Journals (Sweden)

    Jaciro Soave

    1985-01-01

    , pois foram superiores ou iguais ao controle em todos os parâmetros analisados.Aiming to detect rice seed discoloration fungi, the behavior of 37 lowland rice cultivars to each of them was determined in two field trials carried out with three replications in two sites of the State of São Paulo (Tremembé and Pindamonhangaba, Brazil, in 1980/81. Seed samples were drawn from the whole yield of each experimental plot. Spotted and spotless seeds were visually separated and discolored seed (DS% and weight loss percentages (WL% calculated. From each treatment 50 spotted and 50 spotless seeds were plated separately in Petri dishes and incubated by the blotter method. The following fungi species were detected: Alternaria sp., Cephalosporium sp., Cladosportum spp., Corynespora sp., Curvularia spp., Epicoccum spp., Fusarium moniliforme, Helminthosporium oryzae, Phoma spp., Pyricularia oryzae, Rhizoctonia solani, Rhynchosporium oryzae, Trichoconiella padwickii, Trichoderma sp. e Trichothecium sp. In relation to the number of seeds infected with each fungus, highly significant statistical differences between spotted and spotless seeds were detected for H. oryzae, Phoma spp., R. oryae and T. padwickii. They were considered as causal agents of the spots. The statistical analysis of ihe data related to each parameter showed that a variable number of cultivars out performed the commercial control, as to each respective parameter studied: 32 as to DS%; 4 as to WL%; 24 as to H. oryzae; 6 as to Phoma spp.; all cultivars as to R. oryzae and 11 as to P. padwickii. The statistical analysis of all parameters in the two sites showed the cultivars PI-1291, PI-1356, PI-1377, IR-1544, P2-S1-78, L-17-72, P2-48, P2-S2 and GI-6904-6 as the best ones when compared with the commercial control IAC-899.

  9. Rice root-associated bacteria: insights into community structures across 10 cultivars

    NARCIS (Netherlands)

    Hardoim, P.R.; Andreote, F.D.; Reinhold-Hurek, B.; Sessitsch, A.; Overbeek, van L.S.; Elsas, van J.D.

    2011-01-01

    In this study, the effects of plant genotype, soil type and nutrient use efficiency on the composition of different bacterial communities associated with rice roots were investigated. Thus, total bacteria, Alpha- and Betaproteobacteria, Pseudomonas and Actinobacteria were studied using PCR, followed

  10. Rice root-associated bacteria : insights into community structures across 10 cultivars

    NARCIS (Netherlands)

    Hardoim, P. R.; Andreote, F. D.; Reinhold-Hurek, B.; Sessitsch, A.; van Overbeek, L. S.; van Elsas, J. D.

    In this study, the effects of plant genotype, soil type and nutrient use efficiency on the composition of different bacterial communities associated with rice roots were investigated. Thus, total bacteria, Alpha- and Betaproteobacteria, Pseudomonas and Actinobacteria were studied using PCR, followed

  11. DIFFERENCES BETWEEN WHEAT CULTIVARS IN GRAIN PARAMETERS RELATED TO ETHANOL PRODUCTION

    Directory of Open Access Journals (Sweden)

    Daniela Mikulíková

    2011-12-01

    Full Text Available Wheat grain samples from sixteen winter cultivars originated from four localities were evaluated and compared in traits related to ethanol production as grain yield, grain hardness, content of protein, starch and amylose, and α-amylase activity. Results obtained indicate significant differences between cultivars in amylose content, α-amylase activity, and grain hardness compared to grain yield, protein content, and starch content where differences were not significant. The amylose content, α-amylase activity, and grain hardness were affected by cultivar. Both testing methods for starch fermentation - separated hydrolysis and fermentation (SHF and simultaneous saccharification and fermentation (SSF revealed difference between cultivars in ethanol yield.

  12. Blast resistance of space-induced variants derived from rice cultivar Hanghui 7

    International Nuclear Information System (INIS)

    Zhang Jingxin; Yang Qiyun; Zhu Xiaoyuan; Wang Hui; Zeng Liexian; Liu Yongzhu; Guo Tao; Chen Zhiqiang

    2010-01-01

    To screen the resistance lines to rice blast, the blast resistance of SP 3 and SP 4 progenies derived from rice variety Hanghui 7 were evaluated after satellite flight, and the genomic DNA polymorphism of the resistant variants selected from SP 3 was compared with the wild type by microsatellite markers. The results indicated that the SP 3 Variant line H24, which was selected from the 250 space-induced lines ( SP 3 ) with excellent agronomic and economical characters, showed resistance segregation (119R : 108S) against blast isolate GD3286. It was demonstrated that the resistance of H24 might be controlled by two dominant and complementary resistance genes. The resistance of H24 was still segregated in SP 4 , but the resistance spectrum of H24 was 84. 4% in SP 5 , much higher than the wild type, 40. 6%, and H24 especially showed resistant against some blast isolates of broad pathogenic spectrum or specialized pathogenicity; further more, the DNA polymorphism wasn't detected between H24 and its wild type by 229 SSR (simple sequence repeat) markers covering the rice genome equally. (authors)

  13. Compositional analyses of white, brown and germinated forms of popular Malaysian rice to offer insight into the growing diet-related diseases.

    Science.gov (United States)

    Abubakar, Bilyaminu; Yakasai, Hafeez Muhammad; Zawawi, Norhasnida; Ismail, Maznah

    2018-04-01

    Diet-related metabolic diseases, and especially obesity, are metabolic disorders with multifactorial aetiologies. Diet has been a cornerstone in both the aetiology and management of this metabolic disorders. Rice, a staple food for over half of the world's population, could be exploited as part of the solution to check this menace which has been skyrocketing in the last decade. The present study investigated nine forms of rice from three widely grown Malaysian rice cultivars for in vitro and in vivo (glycaemic index and load) properties that could translate clinically into a lower predisposition to diet-related diseases. The germinated brown forms of MRQ 74 and MR 84 rice cultivars had high amylose content percentages (25.7% and 25.0%), high relative percentage antioxidant scavenging abilities of 85.0% and 91.7%, relatively low glycaemic indices (67.6 and 64.3) and glycaemic load (32.3 and 30.1) values, and modest glucose uptake capabilities of 33.69% and 31.25%, respectively. The results show that all things being equal, rice cultivars that are germinated and high in amylose content when compared to their white and low amylose counterparts could translate into a lower predisposition to diet-related diseases from the dietary point of view in individuals who consume this cereal as a staple food. Copyright © 2017. Published by Elsevier B.V.

  14. Changes of tocopherols, tocotrienols, γ-oryzanol, and γ-aminobutyric acid levels in the germinated brown rice of pigmented and nonpigmented cultivars.

    Science.gov (United States)

    Ng, Lean-Teik; Huang, Shao-Hua; Chen, Yen-Ting; Su, Chun-Han

    2013-12-26

    This study examined the changes of tocopherols (Toc), tocotrienols (T3), γ-oryzanol (GO), and γ-aminobutyric acid (GABA) contents in germinated brown rice (GBR) of pigmented and nonpigmented cultivars under different germination conditions. Results showed that the Toc and T3 contents in GBR were significantly different between treatments in both rice cultivars. The pigmented GBR possessed higher total vitamin E, total Toc, total T3, and GO contents than the nonpigmented GBR; however, its level of GABA was lower. The order of the three highest vitamin E homologues in pigmented and nonpigmented GBR was γ-T3 > γ-Toc > α-Toc and α-Toc > γ-T3 > α-T3, respectively; β-Toc, β-T3, δ-Toc, and δ-T3 were present in only small amounts (≤1.0 mg/kg) in GBR of both cultivars. Although both cultivars showed an increase in GABA contents with increasing germination time, the GABA content in nonpigmented GBR was higher.

  15. Clustering of 18 Local Black Rice Base on Total Anthocyanin

    Directory of Open Access Journals (Sweden)

    Kristamtini Kristamtini

    2017-10-01

    Full Text Available Black rice has a high anthocyanin content in the pericarp layer, which provides a dark purple color. Anthocyanin serve as an antioxidant that control cholesterol level in the blood, prevent anemia, potentially improve the body's resistance to disease, improve damage to liver cells (hepatitis and chirrosis, prevent impaired kidney function, prevent cancer/tumors, slows down antiaging, and prevent atherosclerosis and cardiovascular disease. Exploration results at AIAT Yogyakarta, Indonesia from 2011 to 2014 obtained 18 cultivar of local black rice Indonesia. The names of the rice are related to the color (black, red or purple formed by anthocyanin deposits in the pericarp layer, seed coat or aleuron. The objective of the study was to classify several types of local black rice from explorations based on the total anthocyanin content. The study was conducted by clustering analyzing the total anthocyanin content of 18 local black rice cultivars in Indonesia. Cluster analysis of total anthocyanin content were done using SAS ver. 9.2. Clustering dendogram shows that there were 4 groups of black rice cultivars based on the total anthocyanin content. Group I consists of Melik black rice, Patalan black rice, Yunianto black rice, Muharjo black rice, Ngatijo black rice, short life of Tugiyo black rice, Andel hitam 1, Jlitheng, and Sragen black rice. Group II consists of Pari ireng, Magelang black hairy rice, Banjarnegara-Wonosobo black rice, and Banjarnegara black rice. Group III consists of NTT black rice, Magelang non hairy black rice, Sembada hitam, and longevity Tugiyo black rice. Group IV consist only one type of black rice namely Cempo ireng. The grouping result indicate the existence of duplicate names among the black rice namely Patalan with Yunianto black rice, and short life Tugiyo with Andel hitam 1 black rice.

  16. Crescimento radicular e aéreo de cultivares de arroz de terras altas em função da calagem Root and shoot growth of upland rice cultivars as affected by lime application

    Directory of Open Access Journals (Sweden)

    Carlos Alexandre Costa Crusciol

    2012-01-01

    Full Text Available O presente trabalho teve como objetivo avaliar o crescimento radicular e da parte aérea, além da eficiência de absorção de nutrientes pelas cultivares de arroz Caiapó e Maravilha, em função da calagem. O experimento foi desenvolvido em casa de vegetação, sendo os tratamentos constituídos pelas cultivares Caiapó e Maravilha combinadas com os índices de saturação por bases (V% de 10, 40 e 70. O delineamento experimental utilizado foi inteiramente casualizado, com quatro repetições. Foram avaliados o número de perfilhos, comprimento radicular, matéria seca de raízes, folhas e colmos, o teor foliar e a eficiência de absorção dos macronutrientes. De forma geral, observou-se que a cultivar moderna superou a tradicional em matéria seca de raízes, comprimento radicular, número de colmos, matéria seca de colmos e da parte aérea, além de acumular mais nutrientes a cultivar tradicional, mesmo nas condições de maior acidez. No entanto, os teores de nutrientes foram maiores na cultivar Caiapó. A cultivar Maravilha possui maior crescimento radicular e da parte aérea, nos diversos níveis de acidez, enquanto a Caiapó tem maior eficiência de absorção dos nutrientes do solo. A V% de 40 é a mais efetiva para ambas as cultivares.This work aimed to evaluate root growth, shoot development and nutrient absorption efficiency by rice cultivars Caiapó and Maravilha as affected by lime application. The experiment was carried out in a greenhouse, with treatments set up by Caiapó and Maravilha cultivars in combination with the base saturation (V% of 10%, 40% and 70%. The experiment was in a randomized complete block design, with four replications. The number of tillers, root length, root dry matter, leaves and stems, leaf content and macronutrients absorption efficiency were evaluated. Comparing cultivars, Maravilha cultivar presented higher root dry weight, root length, number of stems, dry matter of stems and shoot than Caiap

  17. Cultivar Differences in Plant Transpiration Rate at High Relative Air Humidity Are Not Related to Genotypic Variation in Stomatal Responsiveness

    DEFF Research Database (Denmark)

    Gebraegziabher, Habtamu Giday; Kjær, Katrine Heinsvig; Ottosen, Carl-Otto

    2015-01-01

    Plants grown at high relative air humidity (RH) often show disturbed water relations due to less responsive stomata. The attenuation of stomatal responsiveness as a result of high RH during leaf expansion depends on the cultivar. We hypothesized that tolerant cultivars to high RH experience a low...

  18. Identification of a new locus conferring antixenosis to the brown planthopper in rice cultivar Swarnalata (Oryza sativa L.).

    Science.gov (United States)

    Qiu, Y F; Cheng, L; Liu, F; Li, R B

    2013-08-29

    The brown planthopper [Nilaparvata lugens (Stål); BPH] has caused severe damage to rice production. The identification of resistance genes and the development of BPH-resistant varieties are economical and effective ways to manage this pest. Using an F2 population from a cross between the Indica cultivars 93-11 and Swarnalata, we mapped the Qbph-8 locus to a 7.3-cM region on chromosome 8 in two tests, flanked by the markers RM339 and RM515. In this population, Qbph-8 explained 7.7 and 6.6% of the phenotypic variance of BPH preference in both tests. In the BPH host choice test, the average number of settled BPHs on the Qbph-8 plants was less than that on the 93-11 plants over the 24- to 120-h observation period. Furthermore, less BPH insects were observed on the BPH6+Qbph-8 plant compared with the BPH6 plant or Qbph-8 plant, indicating a stronger antixenotic effect shown in the gene pyramiding plants. Hence, this locus can be pyramided with other BPH resistance genes and applied to breed-resistant varieties, which possibly can improve the resistance level and durable resistance to the BPH.

  19. Germination of Several Groundnut Cultivars in Relation to Incidence

    African Journals Online (AJOL)

    Ahmed et al.

    In Nigeria, it has good potential as a legume crop due to its ability to add nitrogen to the ... The germination index (GI) was calculated as number of seedling emerging in .... isolated from all cultivars and this agreed with the work of. Mohammed ...

  20. Enzyme expression in indica and japonica rice cultivars under saline stress - doi: 10.4025/actascibiolsci.v34i4.8535

    Directory of Open Access Journals (Sweden)

    Luciano do Amarante

    2012-09-01

    Full Text Available The southern State of Rio Grande do Sul (RS is the main rice producer in Brazil with a 60% participation of the national production and 86% participation of the region. Rice culture irrigation system is done by flooding, which leads to soil salinization, a major environmental constraint to production since it alters the plants’ metabolism exposed to this type of stress. The indica cultivar, widely used in RS, has a higher sensitivity to salinity when compared to that of the japonica cultivar in other physiological aspects. Current research analyzes enzymes expression involved in salt-subjected indica and japonica rice cultivars’ respiration. Oryza sativa L. spp. japonica S.Kato (BRS Bojuru, IAS 12-9 Formosa and Goyakuman and Oryza sativa L. spp. indica S. Kato (BRS Taim-7, BRS Atalanta and BRS Querencia were the cultivars employed. Seedlings were transferred to 15 L basins containing 50% Hoagland nutrient solution increased by 0, 25, 50, 75 and 100 mM NaCl, and collected at 14, 28 and 42 days after transfer (DAT. Plant tissues were macerated and placed in eppendorf tubes with Scandálios extractor solution. Electrophoresis was performed in 7% of the polyacrylamide gels in vertical vats. Bands were revealed for the following enzymes systems: esterase, alcohol dehydrogenase, phosphoglucoisomerase, malate dehydrogenase, malic enzyme and alpha amylase. The enzymes expression was greater in subspecies japonica, with more intense bands in proportion to salinity increase. Results show that enzyme systems are involved in the salinity defense mechanisms in O. sativa spp. japonica cultivar.  

  1. Genetic basis of yield and some yield related traits in basmati rice

    International Nuclear Information System (INIS)

    Saleem, M.Y.; Haq, M.A.; Mirza, J.I.

    2010-01-01

    Additive, dominance and epistasis components of genetic variation for yield and some yield related traits were assessed through modified triple test cross technique in Basmati rice. Epistasis was found an important part of genetic variation for plant height, tillers per plant, secondary branches per panicle, grains per panicle, 1000-grain weight and yield per plant except primary branches per panicle and panicle length. Bifurcation of epistasis showed that additive x additive (i) type and additive x dominance + dominance x dominance (j + l) types of non-allelic interactions were involved in the expression of these traits. Additive and dominance type of gene action influenced the expression of primary branches per panicle and panicle length. No evidence of directional dominance was observed for these two traits. For plant height, tillers per plant, secondary branches per panicle, grains per panicle, 1000-grain weight and yield per plant, recurrent selection or bi parental mating may be exercised in F2 and following generations however, selection of desired plants may be postponed till F5 or F6 generations to permit maximum obsession of epistatic effects to develop desired cultivar(s) in Basmati rice.(author)

  2. Genetic parameters estimation on functional dryness traits of crossed black paddy rice "Baas Selem Cultivar X Situ Patenggang” variety

    Directory of Open Access Journals (Sweden)

    I.G.P.M. Aryana

    2014-07-01

    Full Text Available The aims of this study were to elucidate heritability and the role of drought traits genes of black paddy rice for determination base of the selection method to obtain drought tolerant and high yield potential of black paddy rice. The study was conducted through two experiments during February-November 2013. The first experiment was the establishment of populations from crosses carried out in the hybridization room. The second trial was evaluation of the genetic diversity of drought properties held in the greenhouse of the Faculty of Agriculture, University of Mataram. Planting was carried out in pots without experiment design. Population of P1 (parental-Situ Patenggang, P2 (parental-Baas Selem were 50 plants of each; population of F1, F1BC.1.2, and F1BC.1.1 were 25 plants of each, and 250 plants of F2, as well as control of drought susceptible variety (IR20 was 10 plants. To determine the heritability and the role of genes controlling drought traits were used index of bud dry and cure of IRRI standard. The results showed that crossing of black paddy rice "Baas Selem x Situ Patenggang” had relatively moderate heritability in broad sense and low heritability in narrow sense. In the crossed F1 population was found that gene action of drought trait was not perfectly dominant

  3. Physiological analysis of leaf senescence of two rice cultivars with different yield potential Análise fisiológica da senescência foliar de duas cultivares de arroz com diferentes potenciais de produtividade

    Directory of Open Access Journals (Sweden)

    Antelmo Ralph Falqueto

    2009-07-01

    Full Text Available The objective of this work was to evaluate the physiological changes that occur in different leaves during the early and late grain-filling stages of two rice genotypes (Oryza sativa subsp. indica , BRS Pelota cultivar, and O. sativa subsp. japonica , BRS Firmeza cultivar, which present differences in grain yield potential. The plants were cultivated in greenhouse. Pigment content, chlorophyll fluorescence, electron transport and oxygen evolution rate were determined in the grain-filling stage, from the first to the forth leaf (top to bottom. Pigment content, photochemical efficiency of photosystem II and electron transport decreased significantly according to the position of leaves in 'BRS Pelota'. The BRS Firmeza cultivar shows higher pigment content and higher activity of the photosynthetic apparatus in comparison to 'BRS Pelota' during the grain-filling stage.O objetivo deste trabalho foi avaliar as mudanças fisiológicas que ocorrem em diferentes folhas durante o início e o final do estádio de enchimento de grãos em dois genótipos de arroz (Oryza sativa subsp. indica cultivar BRS Pelota e O. sativa subsp. japonica cultivar BRS Firmeza que apresentam diferenças no potencial de produção de grãos. As plantas foram cultivadas em casa de vegetação. Os teores de pigmentos, a fluorescência da clorofila e a taxa de liberação de oxigênio foram determinados no estádio de enchimento de grão da primeira à quarta folha (do topo à base. O teor de pigmentos, a eficiência fotoquímica do fotossistema II e o transporte de elétrons decresceram significativamente de acordo com a posição das folhas na cultivar BRS Pelota. A cultivar BRS Firmeza apresentou maior teor de pigmentos e maior atividade do aparato fotossintético em comparação à 'BRS Pelota' durante o estádio de enchimento de grão.

  4. Acúmulo de massa seca em três cultivares de arroz irrigado com diferentes arquiteturas de plantas Dry matter accumulation by three flooded rice cultivars with different plant canopy

    Directory of Open Access Journals (Sweden)

    Juçara Terezinha Paranhos

    1995-01-01

    Full Text Available O experimento foi conduzido em Planossolo da Unidade de Mapeamento Vacacaí, com o ohjetivo de estudar o acúmulo de massa seca nos diversos órgãos da planta de três cultivares de arroz irrigado (EEA 406, Bluebelle e BR-IRGA 409, utilizando-se delineamento de blocos ao acaso com cinco repetições. A massa seca foi obtida em sete estádios fenológicos da cultura. Desconsiderando os grãos e panículas, a EEA 406 possui maior capacidade produtiva de fitomassa, sendo a Bluebelle menos produtiva. Na maturação, a cultivar BR-IRGA 409 apresentou maior massa seca total, demonstrando maior capacidade de alocar assimilados nos grãos e maior eficiência de conversão de energia solar em fitomassa, sendo a Bluebelle menos eficiente. Para as três cultivares, até a floração, o colmo acumulou a maior percentagem de massa seca sendo, a partir daí, substituído pelas panículas e grãos. O máximo acúmulo de massa seca nas raízes ocorreu por ocasião da floração, cerca de 80 dias após a emergência.This experiment was carried out in an Halbaqualf soil to study the dry matter accumulation of three flooded rice cultivars. A complete randomized block design was used, with tive replication. Plant dry matter was measured in seven different growth stages. The cultivar EEA 406 had a higherdry matter accumulation than the cultivar Bluebelle without including grain and panicle. At maturity, the BR-IRGA 409 cultivar showed higher total dry matter. This demonstrate a better capacity of this variety in alocating assimilates into grains a higher effíciency in converting solar energy into plant biomass. The Bluebelle had lower efficiency. The dry matter accumulation increased for the three varieties from seeding to flowering into colm and, from flowering to harvest into panicles and grain. The maximum dry matter accumulation in roots was observed at flowering, eighty days after emergency.

  5. Aluminium localization and toxicity symptoms related to root growth ...

    Indian Academy of Sciences (India)

    2012-10-26

    Oct 26, 2012 ... Aluminium localization and toxicity symptoms related to root growth inhibition in rice (Oryza sativa ... growth of this cultivar when submitted to Al3+ stress. Moreover ..... Caiapó. Previous work has shown the IAC cultivar to be.

  6. Reduced arsenic accumulation in indica rice (Oryza sativa L.) cultivar with ferromanganese oxide impregnated biochar composites amendments.

    Science.gov (United States)

    Lin, Lina; Gao, Minling; Qiu, Weiwen; Wang, Di; Huang, Qing; Song, Zhengguo

    2017-12-01

    The effects of biochar (BC) and ferromanganese oxide biochar composites (FMBC 1 and FMBC 2 ) on As (Arsenic) accumulation in rice were determined using a pot experiment. Treatments with BC or FMBC improved the dry weights of rice roots, stems, leaves, and grains in soils containing different As contamination levels. Compared to BC treatment, FMBC treatments significantly reduced As accumulation in different parts of the rice plants (P rice can be attributed to As(III) to As(V) oxidation by ferro - manganese binary oxide, which increased the As adsorbed by FMBC. Furthermore, Fe and Mn plaques on the rice root surface decreased the transport of As in rice. Taken together, our results demonstrated the applicability of FMBC as a potential measure for reducing As accumulation in rice, improving the amino acid content of rice grains, and effectively remediating As-polluted soil. Copyright © 2017 Elsevier Ltd. All rights reserved.

  7. Plant-water relations and productivity of date palm (Phoenix dactyliferaL.) Cultivars

    International Nuclear Information System (INIS)

    Al-Khalifah, N.S.; Khan, P.R.

    2006-01-01

    The present investigation deals with the plant-water relation and itseffect on chlorophyll content and productivity in six date palm cultivars.Growth and yield of date palm cultivars differed at the expense of same levelof relative water content. Maktoomi showed a significantly higher leafletarea coupled with a higher amount of chlorophyll pigments that led to higheryield per tree. Koweriah recorded a poor yield by having significantly lowerchlorophyll content and leaflet area. Relative Water Content (RWC) had noeffect on the fruit quality. Correlation among the relative water content,chlorophyll content, leaf specific mass and yield was also analyzed. Most ofthe pairs of parameters exhibited a highly significant correlation for thesix cultivars. Apart from physiological parameters, the effect of malepollinator with suitable combination of female variety had a great effect onthe fruit set and yield of date palm. (author)

  8. Stomatal conductance, mesophyll conductance, and transpiration efficiency in relation to leaf anatomy in rice and wheat genotypes under drought.

    Science.gov (United States)

    Ouyang, Wenjing; Struik, Paul C; Yin, Xinyou; Yang, Jianchang

    2017-11-02

    Increasing leaf transpiration efficiency (TE) may provide leads for growing rice like dryland cereals such as wheat (Triticum aestivum). To explore avenues for improving TE in rice, variations in stomatal conductance (gs) and mesophyll conductance (gm) and their anatomical determinants were evaluated in two cultivars from each of lowland, aerobic, and upland groups of Oryza sativa, one cultivar of O. glaberrima, and two cultivars of T. aestivum, under three water regimes. The TE of upland rice, O. glaberrima, and wheat was more responsive to the gm/gs ratio than that of lowland and aerobic rice. Overall, the explanatory power of the particular anatomical trait varied among species. Low stomatal density mostly explained the low gs in drought-tolerant rice, whereas rice genotypes with smaller stomata generally responded more strongly to drought. Compared with rice, wheat had a higher gm, which was associated with thicker mesophyll tissue, mesophyll and chloroplasts more exposed to intercellular spaces, and thinner cell walls. Upland rice, O. glaberrima, and wheat cultivars minimized the decrease in gm under drought by maintaining high ratios of chloroplasts to exposed mesophyll cell walls. Rice TE could be improved by increasing the gm/gs ratio via modifying anatomical traits. © The Author 2017. Published by Oxford University Press on behalf of the Society for Experimental Biology.

  9. Biomass saccharification is largely enhanced by altering wall polymer features and reducing silicon accumulation in rice cultivars harvested from nitrogen fertilizer supply.

    Science.gov (United States)

    Zahoor; Sun, Dan; Li, Ying; Wang, Jing; Tu, Yuanyuan; Wang, Yanting; Hu, Zhen; Zhou, Shiguang; Wang, Lingqiang; Xie, Guosheng; Huang, Jianliang; Alam, Aftab; Peng, Liangcai

    2017-11-01

    In this study, two rice cultivars were collected from experimental fields with seven nitrogen fertilizer treatments. All biomass samples contained significantly increased cellulose contents and reduced silica levels, with variable amounts of hemicellulose and lignin from different nitrogen treatments. Under chemical (NaOH, CaO, H 2 SO 4 ) and physical (hot water) pretreatments, biomass samples exhibited much enhanced hexoses yields from enzymatic hydrolysis, with high bioethanol production from yeast fermentation. Notably, both degree of polymerization (DP) of cellulose and xylose/arabinose (Xyl/Ara) ratio of hemicellulose were reduced in biomass residues, whereas other wall polymer features (cellulose crystallinity and monolignol proportion) were variable. Integrative analysis indicated that cellulose DP, hemicellulosic Xyl/Ara and silica are the major factors that significantly affect cellulose crystallinity and biomass saccharification. Hence, this study has demonstrated that nitrogen fertilizer supply could largely enhance biomass saccharification in rice cultivars, mainly by reducing cellulose DP, hemicellulosic Xyl/Ara and silica in cell walls. Copyright © 2017 Elsevier Ltd. All rights reserved.

  10. A novel two T-DNA binary vector allows efficient generation of marker-free transgenic plants in three elite cultivars of rice (Oryza sativa L.).

    Science.gov (United States)

    Breitler, Jean-Christophe; Meynard, Donaldo; Van Boxtel, Jos; Royer, Monique; Bonnot, François; Cambillau, Laurence; Guiderdoni, Emmanuel

    2004-06-01

    A pilot binary vector was constructed to assess the potential of the 2 T-DNA system for generating selectable marker-free progeny plants in three elite rice cultivars (ZhongZuo321, Ariete and Khao Dawk Mali 105) known to exhibit contrasting amenabilities to transformation. The first T-DNA of the vector, delimited by Agrobacterium tumefaciens borders, contains the hygromycin phosphotransferase (hpt) selectable gene and the green fluorescent protein (gfp) reporter gene while the second T-DNA, delimited by Agrobacterium rhizogenes borders, bears the phosphinothricin acetyl transferase (bar) gene, featuring the gene of interest. 82-90% of the hygromycin-resistant primary transformants exhibited tolerance to ammonium glufosinate mediated by the bar gene suggesting very high co-transformation frequency in the three cultivars. All of the regenerated plants were analyzed by Southern blot which confirmed co-integration of the T-DNAs at frequencies consistent with those of co-expression and allowed determination of copy number for each gene as well as detection of two different vector backbone fragments extending between the two T-DNAs. Hygromycin susceptible, ammonium glufosinate tolerant phenotypes represented 14.4, 17.4 and 14.3% of the plants in T1 progenies of ZZ321, Ariete and KDML105 primary transformants, respectively. We developed a statistical model for deducing from the observed copy number of each T-DNA in T0 plants and phenotypic segregations in T1 progenies the most likely constitution and linkage of the T-DNA integration locus. Statistical analysis identified in 40 out of 42 lines a most likely linkage configuration theoretically allowing genetic separation of the two T-DNA types and out segregation of the T-DNA bearing the bar gene. Overall, though improvements of the technology would be beneficial, the 2 T-DNA system appeared to be a useful approach to generate selectable marker-free rice plants with a consistent frequency among cultivars.

  11. Resposta de cultivares de arroz a doses de nitrogênio e do regulador de crescimento cloreto de clormequat Response of rice cultivars to nitrogen and growth regulator chlormequat chloride

    Directory of Open Access Journals (Sweden)

    Salatiér Buzetti

    2006-12-01

    Full Text Available O objetivo deste trabalho foi avaliar os efeitos de doses de nitrogênio (0, 50, 100 e 150 kg ha-1 e do regulador de crescimento cloreto de clormequat (0, 1 e 2 L ha-1, em algumas características agronômicas de cultivares de arroz IAC 201 e IAC 202. O delineamento experimental foi o de blocos ao acaso, com quatro repetições. O N foi aplicado em cobertura, no estádio da diferenciação floral, e o regulador de crescimento foi aplicado parceladamente, aos 20 e 30 dias após a emergência das plântulas de arroz (perfilhamento. Na safra 2001/2002, houve efeito significativo de N para altura de plantas, comprimento da panícula, espiguetas por panícula, massa de 100 grãos e produtividade de grãos. Houve efeito do regulador de crescimento sobre o comprimento da panícula e espiguetas por panícula. A maior produtividade foi a da cultivar IAC 202. Na safra 2002/2003, houve efeito de N para altura de plantas, massa de 100 grãos, fertilidade das espiguetas e produtividade de grãos. O regulador de crescimento não exerceu efeito nas características testadas, e a cultivar IAC 202 foi novamente a mais produtiva.The objective of this work was to evaluate N rates (0, 50, 100 and 150 kg ha-1 and the growth regulator chlormequat chloride effect (0, 1 e 2 L ha-1 on some agronomic characteristics of rice cultivars IAC 201 and IAC 202. The experimental design was a randomized block with four replicates. Nitrogen was applied as side-dressing at flower differentiation and the growth regulator was split in two times and applied at 20 and 30 days after seedlings emergency (tillering. In the harvests of 2001/2002, there was no significant effect of N rates on plant height, panicle length, spikelet per panicle, 100-grain mass and grain yield. The growth regulator rates were significant for panicle length and spikelet per panicle. IAC 202 presented higher grain yield. In the harvest of 2002/2003 there was no effect of N rates on plant height, spikelet

  12. Evaluation of low light intensity at three phenological stages in the agronomic and physiological responses of two rice (Oryza sativa L. cultivars

    Directory of Open Access Journals (Sweden)

    Hermann Restrepo

    2013-08-01

    Full Text Available A study was carried out to assess the effect of two irradiance levels (100 and 50% natural light at three different growth stages on yield and physiological characteristics of two rice cultivars (Fedearroz 50 and Fedearroz 733. The plants were exposed to low irradiance for 5 days consecutive by using black net cloth (about 50% of normal at the panicle primordium, flowering and grain filling stages. The obtained results showed that the leaf chlorophyll content (SPAD readings was higher in rice leaves under low irradiance. The chlorophyll content from the shade treatment apparently remained constant until the grain filling phase, then decreased slightly in the 'F50' rice plants and remarkably in the 'F733' plants. Stomatal conductance (gs was negatively affected by shading, with the effect being more adverse in the 'F733' plants. At the flowering and grain filling phases, grain yield was reduced by the low light treatments by around ~20% in the 'F50' plants. While, in 'F733', they were only affected by shading at the grain filling stage, causing a decrease of around 25%. These results seem to indicate that "F773" may have a better capacity for partitioning dry matter than "F50" in spite of the fact that the gas exchange characteristics were conditioned by low irradiance conditions at the reproductive and ripening phases

  13. Novel QTLs affecting rice kernel fissure resistance discovered in the cultivar ‘Saber’ augment those from ‘Cybonnet’

    Science.gov (United States)

    Kernel fissures in rice (Oryza sativa L.) caused by pre- or post-harvest stresses are the leading cause of breakage among milled rice. Such breakage causes economic losses for producers, millers, and marketers. Five QTLs for kernel fissure resistance (FR) were identified among a set of 275 RILs de...

  14. Mapping and validation of QTLs for cold tolerance at seedling stage in rice from an indica cultivar Habiganj Boro VI (Hbj.BVI).

    Science.gov (United States)

    Biswas, Partha S; Khatun, Hasina; Das, Nomita; Sarker, Md Mahathir; Anisuzzaman, M

    2017-12-01

    Yellowing, stunting, and seedling death associated with cold stress is a common problem in many Asian countries for winter rice cultivation. Improvement of cultivars through marker-assisted selection of QTLs for cold tolerance at seedling stage from locally adapted germplasm/cultivar is the most effective and sustainable strategy to resolve this problem. A study was undertaken to map QTLs from 151 F 2:3 progenies of a cross between a cold susceptible variety, BR1 and a locally adapted traditional indica cultivar, Hbj.BVI. A total of six significant QTLs were identified for two cold tolerance indices-cold-induced leaf discoloration and survival rate after a recovery period of seven days on chromosomes 6, 8, 11, and 12. Among these QTLs, qCTSL - 8 - 1 and qCTSS - 8 - 1 being co-localized into RM7027-RM339 on chromosome 8 and qCTSL - 12 - 1 and qCTSS - 12 - 1 into RM247-RM2529 on chromosome 12 showed 12.78 and 14.96% contribution, respectively, to the total phenotypic variation for cold tolerance. Validation of QTL effect in BC 1 F 3 population derived a cross between a cold susceptible BRRI dhan28 and Hbj.BVI showed dominating effect of qCTSL - 12 - 1 on cold tolerance at seedling stage and it became stronger when one or more other QTLs were co-segregated with it. These results suggest that the QTLs identified in this study are stable and effective on other genetic background also, which warrant the use of these QTLs for further study aiming to cultivar development for seedling stage cold tolerance.

  15. Changes in Lignin and Polysaccharide Components in 13 Cultivars of Rice Straw following Dilute Acid Pretreatment as Studied by Solution-State 2D 1H-13C NMR

    Science.gov (United States)

    Teramura, Hiroshi; Sasaki, Kengo; Oshima, Tomoko; Aikawa, Shimpei; Matsuda, Fumio; Okamoto, Mami; Shirai, Tomokazu; Kawaguchi, Hideo; Ogino, Chiaki; Yamasaki, Masanori; Kikuchi, Jun; Kondo, Akihiko

    2015-01-01

    A renewable raw material, rice straw is pretreated for biorefinery usage. Solution-state two-dimensional (2D) 1H-13 C hetero-nuclear single quantum coherence (HSQC) nuclear magnetic resonance (NMR) spectroscopy, was used to analyze 13 cultivars of rice straw before and after dilute acid pretreatment, to characterize general changes in the lignin and polysaccharide components. Intensities of most (15 of 16) peaks related to lignin aromatic regions, such as p-coumarate, guaiacyl, syringyl, p-hydroxyphenyl, and cinnamyl alcohol, and methoxyl, increased or remained unchanged after pretreatment. In contrast, intensities of most (11 of 13) peaks related to lignin aliphatic linkages or ferulate decreased. Decreased heterogeneity in the intensities of three peaks related to cellulose components in acid-insoluble residues resulted in similar glucose yield (0.45–0.59 g/g-dry biomass). Starch-derived components showed positive correlations (r = 0.71 to 0.96) with glucose, 5-hydroxymethylfurfural (5-HMF), and formate concentrations in the liquid hydrolysates, and negative correlations (r = –0.95 to –0.97) with xylose concentration and acid-insoluble residue yield. These results showed the fate of lignin and polysaccharide components by pretreatment, suggesting that lignin aromatic regions and cellulose components were retained in the acid insoluble residues and starch-derived components were transformed into glucose, 5-HMF, and formate in the liquid hydrolysate. PMID:26083431

  16. Switchgrass cultivar EG1102

    Science.gov (United States)

    Bouton, Joseph H; Wood, Donald T

    2012-11-20

    A switchgrass cultivar designated EG1102 is disclosed. The invention relates to the seeds of switchgrass cultivar EG1102, to the plants of switchgrass EG1102, to plant parts of switchgrass cultivar EG1102 and to methods for producing a switchgrass plant produced by crossing switchgrass cultivar EG1102 with itself or with another switchgrass variety. The invention also relates to methods for producing a switchgrass plant containing in its genetic material one or more transgenes and to the transgenic switchgrass plants and plant parts produced by those methods. This invention also relates to switchgrass cultivars or breeding cultivars and plant parts derived from switchgrass variety EG1102, to methods for producing other switchgrass cultivars, lines or plant parts derived from switchgrass cultivar EG1102 and to the switchgrass plants, varieties, and their parts derived from use of those methods. The invention further relates to hybrid switchgrass seeds, plants and plant parts produced by crossing the cultivar EG1102 with another switchgrass cultivar.

  17. Involvement of CAT in the detoxification of HT-induced ROS burst in rice anther and its relation to pollen fertility.

    Science.gov (United States)

    Zhao, Qian; Zhou, Lujian; Liu, Jianchao; Cao, Zhenzhen; Du, Xiaoxia; Huang, Fudeng; Pan, Gang; Cheng, Fangmin

    2018-05-01

    HT-induced ROS burst in developing anther is closely related to the lowered CAT activity as the result of the markedly suppressed OsCATB transcript, thereby causing severe fertility injury for rice plants exposed to HT at meiosis stage. The reproductive stage of rice plants is highly sensitive to heat stress. In this paper, different rice cultivars were used to investigate the relationship of HT-induced floret sterility with reactive oxygen species (ROS) detoxification in rice anthers under well-controlled climatic conditions. Results showed that high temperature (HT) exposure significantly enhanced the ROS level and malondialdehyde (MDA) content in developing anther, and the increase in ROS amount in rice anther under HT exposure was closely associated with HT-induced decline in the activities of several antioxidant enzymes. For various antioxidant enzymes, SOD and CAT were more susceptible to the ROS burst in rice anther induced by HT exposure than APX and POD, in which SOD and CAT activity in developing anther decreased significantly by HT exposure, whereas APX activity was relatively stable among different temperature regimes. HT-induced decrease in CAT activity was attributable to the suppressed transcript of OsCATB. This occurrence was strongly responsible for HT-induced increase in ROS level and oxidative-damage in rice anther, thereby it finally caused significant reduction in pollen viability and floret fertility for the rice plants exposed to HT during meiosis. Exogenous application of 1000 µM salicylic acid (SA) may alleviate HT-induced reduction in pollen viability and floret fertility, concomitantly with the increased CAT activity and reduced ROS level in rice anther.

  18. Screening and Expression of a Silicon Transporter Gene (Lsi1) in Wild-Type Indica Rice Cultivars

    Science.gov (United States)

    Abiri, Rambod; Kalhori, Nahid; Atabaki, Narges

    2017-01-01

    Silicon (Si) is one of the most prevalent elements in the soil. It is beneficial for plant growth and development, and it contributes to plant defense against different stresses. The Lsi1 gene encodes a Si transporter that was identified in a mutant Japonica rice variety. This gene was not identified in fourteen Malaysian rice varieties during screening. Then, a mutant version of Lsi1 was substituted for the native version in the three most common Malaysian rice varieties, MR219, MR220, and MR276, to evaluate the function of the transgene. Real-time PCR was used to explore the differential expression of Lsi1 in the three transgenic rice varieties. Silicon concentrations in the roots and leaves of transgenic plants were significantly higher than in wild-type plants. Transgenic varieties showed significant increases in the activities of the enzymes SOD, POD, APX, and CAT; photosynthesis; and chlorophyll content; however, the highest chlorophyll A and B levels were observed in transgenic MR276. Transgenic varieties have shown a stronger root and leaf structure, as well as hairier roots, compared to the wild-type plants. This suggests that Lsi1 plays a key role in rice, increasing the absorption and accumulation of Si, then alters antioxidant activities, and improves morphological properties. PMID:28191468

  19. Screening and Expression of a Silicon Transporter Gene (Lsi1 in Wild-Type Indica Rice Cultivars

    Directory of Open Access Journals (Sweden)

    Mahbod Sahebi

    2017-01-01

    Full Text Available Silicon (Si is one of the most prevalent elements in the soil. It is beneficial for plant growth and development, and it contributes to plant defense against different stresses. The Lsi1 gene encodes a Si transporter that was identified in a mutant Japonica rice variety. This gene was not identified in fourteen Malaysian rice varieties during screening. Then, a mutant version of Lsi1 was substituted for the native version in the three most common Malaysian rice varieties, MR219, MR220, and MR276, to evaluate the function of the transgene. Real-time PCR was used to explore the differential expression of Lsi1 in the three transgenic rice varieties. Silicon concentrations in the roots and leaves of transgenic plants were significantly higher than in wild-type plants. Transgenic varieties showed significant increases in the activities of the enzymes SOD, POD, APX, and CAT; photosynthesis; and chlorophyll content; however, the highest chlorophyll A and B levels were observed in transgenic MR276. Transgenic varieties have shown a stronger root and leaf structure, as well as hairier roots, compared to the wild-type plants. This suggests that Lsi1 plays a key role in rice, increasing the absorption and accumulation of Si, then alters antioxidant activities, and improves morphological properties.

  20. Screening and Expression of a Silicon Transporter Gene (Lsi1) in Wild-Type Indica Rice Cultivars.

    Science.gov (United States)

    Sahebi, Mahbod; Hanafi, Mohamed M; Rafii, M Y; Azizi, Parisa; Abiri, Rambod; Kalhori, Nahid; Atabaki, Narges

    2017-01-01

    Silicon (Si) is one of the most prevalent elements in the soil. It is beneficial for plant growth and development, and it contributes to plant defense against different stresses. The Lsi1 gene encodes a Si transporter that was identified in a mutant Japonica rice variety. This gene was not identified in fourteen Malaysian rice varieties during screening. Then, a mutant version of Lsi1 was substituted for the native version in the three most common Malaysian rice varieties, MR219, MR220, and MR276, to evaluate the function of the transgene. Real-time PCR was used to explore the differential expression of Lsi1 in the three transgenic rice varieties. Silicon concentrations in the roots and leaves of transgenic plants were significantly higher than in wild-type plants. Transgenic varieties showed significant increases in the activities of the enzymes SOD, POD, APX, and CAT; photosynthesis; and chlorophyll content; however, the highest chlorophyll A and B levels were observed in transgenic MR276. Transgenic varieties have shown a stronger root and leaf structure, as well as hairier roots, compared to the wild-type plants. This suggests that Lsi1 plays a key role in rice, increasing the absorption and accumulation of Si, then alters antioxidant activities, and improves morphological properties.

  1. Ethylene production and constitutive expression of ethylene receptors and ethylene signal transduction during grain filling in apical and basal spikelets of compact-and lax-panicle rice (Oryza sativa cultivars

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    Sudhanshu Sekhar

    2017-12-01

    Full Text Available Grain yields in modern super rice cultivars do not always meet the expectations because many spikelets are located on secondary branches in closely packed homogeneous distribution in these plants, and they do not fill properly. The factors limiting grain filling of such spikelets, especially in the lower panicle branches, are elusive. Two long-duration rice cultivars differing in panicle density, Mahalaxmi (compact and Upahar (lax were cultivated in an open field plot. Grain filling, ethylene production and constitutive expression of ethylene receptors and ethylene signal transducers in apical and basal spikelets of the panicle were compared during the early post-anthesis stage, which is the most critical period for grain development. In another experiment, a similar assessment was made for the medium-duration cultivars compact-panicle OR-1918 and lax-panicle Lalat. Grain weight of the apical spikelets was always higher than that of the basal spikelets. This gradient of grain weight was wide in the compact-panicle cultivars and narrow in the lax-panicle cultivars. Compared to apical spikelets, the basal spikelets produced more ethylene at anthesis and retained the capacity for post-anthesis expression of ethylene receptors and ethylene signal transducers longer. High ethylene production enhanced the expression of the RSR1 gene, but reduced expression of the GBSS1 gene. Ethylene inhibited the partitioning of assimilates of developing grains resulting in low starch biosynthesis and high accumulation of soluble carbohydrates. It is concluded that an increase in grain/spikelet density in rice panicles reduces apical dominance to the detriment of grain filling by production of ethylene and/or enhanced perception of the ethylene signal. Ethylene could be a second messenger for apical dominance in grain filling. The manipulation of the ethylene signal would possibly improve rice grain yield.

  2. The effectiveness of preplant seed bio-invigoration techniques using Bacillus sp. CKD061 to improving seed viability and vigor of several local upland rice cultivars of Southeast Sulawesi

    Science.gov (United States)

    Sutariati, G. A. K.; Bande, L. O. S.; Khaeruni, A.; Muhidin; Mudi, L.; Savitri, R. M.

    2018-02-01

    Research was aimed to evaluate the bio-invigoration techniques using Bacillus sp. CKD061 in improving seed viability and vigor of local upland rice. The research is arranged in factorial with completely randomized design (CRD). The different upland rice cultivars as first factor that consists of 11 cultivars, namely: Pae Tinangge, Pae Rowu, Pae Uwa, Pae Tanta, Pae Waburi-Buri, Pae Mornene, Pae Indalibana, Pae Lawarangka, Pae Huko, Pae Wagamba and Pae Momea. The second factor is the seed bio-invigoration technique, consists of 5 treatments, namely: without seed bio-invigoration (B0), NaCl + Bacillus sp. CKD061 (B1), KNO3 + Bacillus sp. CKD061 (B2), Ground burned-rice husk + Bacillus sp. CKD061 (B3), and Ground brick + Bacillus sp. CKD061 (B4). The results showed that seed bio-invigoration using Bacillus sp. CKD061 gave effect on the seed viability and vigor. Interaction of the seed bio-invigoration and upland rice cultivars were able to improve seed viability and vigor. Seed bio-invigoration ttreatment using ground brick + Bacillus sp. CKD061 was the best treatment, which could improve the viability and vigor of Pae Waburi-Buri, Pae Mornene and Pae Indalibana. The treatment increased vigor index by 133% in Pae Waburi-Buri and 127% in Pae Mornene, and Pae Indalibana compared with control.

  3. Rice production in relation to soil quality under different rice-based cropping systems

    Science.gov (United States)

    Tran Ba, Linh; Sleutel, Steven; Nguyen Van, Qui; Thi, Guong Vo; Le Van, Khoa; Cornelis, Wim

    2016-04-01

    Soil quality of shallow paddy soils may be improved by introducing upland crops and thus a more diverse crop cultivation pattern. Yet, the causal relationship between crop performance and enhanced soil traits in rice-upland crop rotations remains elusive. The objectives of this study were to (i) find correlations among soil properties under different rice-upland crop systems and link selected soil properties to rice growth and yield, (ii) present appropriate values of soil parameters for sustainable rice productivity in heavy clay soil, (iii) evaluate the effect of rotating rice with upland crops on rice yield and economic benefit in a long-term experiment. A rice-upland crop rotational field experiment in the Vietnamese Mekong delta was conducted for 10 years using a randomized complete block design with four treatments and four replications. Treatments were: (i) rice-rice-rice (control - conventional system as farmers' practice), (ii) rice-maize-rice, (iii) rice-mung bean-rice, and (iv) rice-mung bean-maize. Soil and plant sampling were performed after harvest of the rice crop at the end of the final winter-spring cropping season (i.e. year 10). Results show differences in rice growth and yield, and economic benefit as an effect of the crop rotation system. These differences were linked with changes in bulk density, soil porosity, soil aggregate stability index, soil penetration resistance, soil macro-porosity, soil organic carbon, acid hydrolysable soil C and soil nutrient elements, especially at soil depth of 20-30 cm. This is evidenced by the strong correlation (P < 0.01) between rice plant parameters, rice yield and soil properties such as bulk density, porosity, penetration resistance, soil organic carbon and Chydrolysable. It turned out that good rice root growth and rice yield corresponded to bulk density values lower than 1.3 Mg m-3, soil porosity higher than 50%, penetration resistance below 1.0 MPa, and soil organic carbon above 25 g kg-1. The optimal

  4. Marker-Assisted Selection of Xa21 Conferring Resistance to Bacterial Leaf Blight in indica Rice Cultivar LT2

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    Hue Thi Nguyen

    2018-01-01

    Full Text Available Bacterial leaf blight of rice (BLB, caused by Xanthomonas oryzae pv. oryzae, is one of the most destructive diseases in Asian rice fields. A high-quality rice variety, LT2, was used as the recipient parent. IRBB21, which carries the Xa21 gene, was used as the donor parent. The resistance gene Xa21 was introduced into LT2 by marker-assisted backcrossing. Three Xoo races were used to inoculate the improved lines following the clipping method. Eleven BC3F3 lines carrying Xa21 were obtained based on molecular markers and agronomic performance. The 11 lines were then inoculated with the three Xoo races. All the 11 improved lines showed better resistance to BLB than the recipient parent LT2. Based on the level of resistance to BLB and their agronomic performance, five lines (BC3F3 5.1.5.1, BC3F3 5.1.5.12, BC3F3 8.5.6.44, BC3F3 9.5.4.1 and BC3F3 9.5.4.23 were selected as the most promising for commercial release. These improved lines could contribute to rice production in terms of food security.

  5. Marker-Assisted Selection of Xa21 Conferring Resistance to Bacterial Leaf Blight in indica Rice Cultivar LT2

    Institute of Scientific and Technical Information of China (English)

    Hue Thi NGUYEN; Trung Nguyen DINH; Nakano TOSHITSUGU; Liet Van VU; Quang Hong VU; Tan Van MAI; Thu Thi NGUYEN; Lam Duc VU; Tung Thanh NGUYEN; Long Viet NGUYEN; Hien Thu Thi VU; Hue Thi NONG

    2018-01-01

    Bacterial leaf blight of rice (BLB), caused by Xanthomonas oryzae pv. oryzae, is one of the most destructive diseases in Asian rice fields. A high-quality rice variety, LT2, was used as the recipient parent. IRBB21, which carries the Xa21 gene, was used as the donor parent. The resistance gene Xa21 was introduced into LT2 by marker-assisted backcrossing. Three Xoo races were used to inoculate the improved lines following the clipping method. Eleven BC3F3lines carrying Xa21 were obtained based on molecular markers and agronomic performance. The 11 lines were then inoculated with the three Xoo races. All the 11 improved lines showed better resistance to BLB than the recipient parent LT2. Based on the level of resistance to BLB and their agronomic performance, five lines (BC3F35.1.5.1, BC3F35.1.5.12, BC3F38.5.6.44, BC3F3 9.5.4.1 and BC3F39.5.4.23) were selected as the most promising for commercial release. These improved lines could contribute to rice production in terms of food security.

  6. Cultivar specific plant-soil feedback overrules soil legacy effects of elevated ozone in a rice-wheat rotation system

    NARCIS (Netherlands)

    Li, Qi; Yang, Yue; Bao, Xuelian; Zhu, Jianguo; Liang, Wenju; Bezemer, T. Martijn

    2016-01-01

    Abstract Tropospheric ozone has been recognized as one of the most important air pollutants. Many studies have shown that elevated ozone negatively impacts yields of important crops such as wheat or rice, but how ozone influences soil ecosystems of these crops and plant growth in rotation systems is

  7. Doses de boro e crescimento radicular e da parte aérea de cultivares de arroz de terras altas Influence of boron addition on growth of roots and shoot of upland rice crops

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    Juliano Corulli Corrêa

    2006-12-01

    Full Text Available O crescimento radicular é favorecido em condições adequadas de disponibilidade de boro no solo e, por isto, a aplicação da dose correta desse micronutriente é de grande importância, para que não ocorra prejuízo no desenvolvimento e na produtividade da cultura de arroz de terras altas, de acordo com a variedade e tipo de solo. O presente trabalho teve como objetivo avaliar a influência das doses de boro no crescimento radicular e da parte aérea, em três cultivares de arroz de terras altas. O experimento foi realizado em casa de vegetação, em vaso com capacidade de 10 L, que continha 8 dm³ de solo Latossolo Vermelho distrófico, sendo o delineamento experimental inteiramente casualizado, em esquema fatorial 3 x 3, com quatro repetições. Os tratamentos consistiram de três cultivares (Caiapó, Primavera e Maravilha e três doses de boro (0, 3 e 6 mg dm-3, usando, como fonte, o bórax. A dose de 6 mg dm-3 foi prejudicial tanto à produção de matéria seca da parte aérea como de raiz para o arroz de terras altas. Além de apresentar maior capacidade de absorção de boro, o cultivar Maravilha apresentou-se mais tolerante à elevação da disponibilidade de B no solo, não ocorrendo alterações de comprimento, diâmetro e superfície radicular.Appropriate boron (B availability in soils favors root growth, and a sufficient supply of this micronutrient is very important for adequate rice development and yield in upland fields, depending on the cultivars and soil type. This study aimed at evaluating the influence of B addition on growth of roots and shoot of three upland rice cultivars. The experiment was carried out in a greenhouse, in 10 L pots containing 8 kg of an Hapludox; the experiment was in a completely random 3 x 3 factorial design, with four replications. The treatments consisted of three rice cultivars (Caiapó, Primavera, and Maravilha and three B rates (0, 3 and 6 mg dm-3, as borax. The B rate of 6 mg dm-3 boron was

  8. Soma térmica de algumas fases do ciclo de desenvolvimento da escala de COUNCE para cultivares Sul-Brasileiras de arroz irrigado Thermal time of some developmental phases of the COUNCE scale for irrigated rice cultivars grown in Southern Brazil

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    Nereu Augusto Streck

    2007-01-01

    Full Text Available A escala de COUNCE é uma escala de desenvolvimento de arroz recente que vem sendo gradativamente adotada no Brasil. No entanto, a duração das fases em ºC dia dessa escala ainda não está disponível para as cultivares brasileiras de arroz irrigado. Sendo assim, o objetivo deste trabalho foi determinar a soma térmica de algumas fases do ciclo de desenvolvimento da escala de COUNCE para cultivares Sul-Brasileiras de arroz irrigado, utilizando-se diversos métodos de cálculo e diferentes temperaturas cardinais ao longo do ciclo de desenvolvimento. Um experimento a campo foi desenvolvido em Santa Maria, RS, durante dois anos agrícolas (2003/2004 e 2004/2005 e com cinco épocas de semeadura em cada um deles. O delineamento experimental foi o inteiramente casualizado com quatro repetições. Cada repetição consistia de um vaso de 12 litros com 10 plantas. As datas dos estágios de desenvolvimento R2 (aparecimento do colar da folha bandeira e R9 (todos os grãos com casca marrom da escala de COUNCE foram registradas no colmo principal de cinco plantas por vaso. As cultivares utilizadas foram IRGA 421, IRGA 416, IRGA 417, IRGA 420, BR-IRGA 409, BRS 7 TAIM e EPAGRI 109. Considerando-se as temperaturas cardinais de 11 °C, 28 °C e 40 °C, a soma térmica para completar a fase emergência-R2 foi de 700-800 °C dia na cultivar muito precoce, 1000-1400 °C dia nas cultivares precoces e 1300-1700 °C dia nas cultivares médias e tardia, e a soma térmica para completar a fase R2-R9 foi de 400-700 °C dia e sem relação com o ciclo da cultivar.The COUNCE scale is a developmental scale recently proposed for rice and that is being used in Brazil. However, the duration of developmental phases of this scale in degree-days is not available for Brazilian irrigated rice cultivars. Thus, the objective of this study was to determine the thermal time of some developmental phases of the COUNCE scale in irrigated rice cultivars grown in Southern Brazil using

  9. Transcriptome and Cell Physiological Analyses in Different Rice Cultivars Provide New Insights Into Adaptive and Salinity Stress Responses

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    Elide Formentin

    2018-03-01

    Full Text Available Salinity tolerance has been extensively investigated in recent years due to its agricultural importance. Several features, such as the regulation of ionic transporters and metabolic adjustments, have been identified as salt tolerance hallmarks. Nevertheless, due to the complexity of the trait, the results achieved to date have met with limited success in improving the salt tolerance of rice plants when tested in the field, thus suggesting that a better understanding of the tolerance mechanisms is still required. In this work, differences between two varieties of rice with contrasting salt sensitivities were revealed by the imaging of photosynthetic parameters, ion content analysis and a transcriptomic approach. The transcriptomic analysis conducted on tolerant plants supported the setting up of an adaptive program consisting of sodium distribution preferentially limited to the roots and older leaves, and in the activation of regulatory mechanisms of photosynthesis in the new leaves. As a result, plants resumed grow even under prolonged saline stress. In contrast, in the sensitive variety, RNA-seq analysis revealed a misleading response, ending in senescence and cell death. The physiological response at the cellular level was investigated by measuring the intracellular profile of H2O2 in the roots, using a fluorescent probe. In the roots of tolerant plants, a quick response was observed with an increase in H2O2 production within 5 min after salt treatment. The expression analysis of some of the genes involved in perception, signal transduction and salt stress response confirmed their early induction in the roots of tolerant plants compared to sensitive ones. By inhibiting the synthesis of apoplastic H2O2, a reduction in the expression of these genes was detected. Our results indicate that quick H2O2 signaling in the roots is part of a coordinated response that leads to adaptation instead of senescence in salt-treated rice plants.

  10. Absorção e redução de nitrato em duas cultivares de arroz na presença de alumínio Uptake and reduction of nitrate in two rice cultivars in the presence of aluminum

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    Gilberto Costa Justino

    2006-08-01

    Full Text Available O objetivo deste trabalho foi estudar os efeitos do alumínio (Al sobre a absorção e a redução de nitrato, em duas cultivares de arroz: Fernandes (tolerante e Maravilha (sensível, expostas a 0 e 500 µM de Al. Depois de 21 dias de crescimento, foram determinados o comprimento, a produção de matéria seca, os teores de Al e de nitrato e a atividade in vitro da redutase do nitrato (RN, nas raízes e na parte aérea, bem como as constantes cinéticas de absorção de nitrato pelas raízes. O Al reduziu o crescimento em comprimento e a produção de matéria seca, nas duas partes das plantas, apenas da cultivar Maravilha. Os teores de Al aumentaram nas raízes e parte aérea das plantas nas duas cultivares, enquanto o teor de nitrato sofreu redução apenas nas raízes da cultivar Maravilha. A Vmax não se modificou, enquanto o Km da absorção de nitrato diminuiu cerca de 11% na cultivar Fernandes e aumentou 310% na Maravilha. Em presença de Al, houve redução na atividade da RN nas raízes das duas cultivares, e na parte aérea apenas da cultivar Maravilha. A cultivar tolerante foi mais eficiente na absorção e na redução de nitrato, o que indica que esses processos são importantes componentes da tolerância ao Al em arroz.The objective of this work was to evaluate the effects of Al on the nitrate uptake and reduction in two rice cultivars, Fernandes (Al tolerant and Maravilha (Al sensitive, exposed to 0 and 500 µM Al. After 21 days of Al treatment, growth in size and dry matter yield, Al and nitrate contents and in vitro nitrate reductase activity (NR in the tops and roots, and the kinetic constants of root nitrate uptake were determined. Aluminum reduced the growth and dry matter yield of both plant parts only in the Maravilha cultivar. Aluminum content increased in the tops and roots of both cultivars, while nitrate content decreased only in the roots of Maravilha cultivar. Vmax did not change, while Km of the nitrate uptake

  11. Effects of nitrogen fertilization strategies on nitrogen use efficiency in physiology, recovery, and agronomy and redistribution of dry matter accumulation and nitrogen accumulation in two typical rice cultivars in Zhejiang, China.

    Science.gov (United States)

    Xie, Wen-xia; Wang, Guang-huo; Zhang, Qi-chun; Guo, Hai-chao

    2007-03-01

    Field experiments were conducted in farmers' rice fields in 2001 and 2002 to study the effects of nitrogen (N) management strategies on N use efficiency in recovery (RE), agronomy (AE) and physiology (PE) and redistribution of dry matter accumulation (DMA) and nitrogen accumulation (NA) in two typical rice cultivars in Jinhua, Zhejiang Province. This study aimed mainly at identifying the possible causes of poor fertilizer N use efficiency (NUE) of rice in Zhejiang by comparing farmers' fertilizer practice (FFP) with advanced site-specific nutrient management (SSNM) and real-time N management (RTNM). The results showed that compared to FFP, SSNM and RTNM reduced DMA and NA before panicle initiation and increased DMA and NA at post-flowering. There is no significant difference between SSNM and FFP in post-flowering dry matter redistribution (post-DMR) and post-flowering nitrogen redistribution (post-NR). These results suggest that high input rate of fertilizer N and improper fertilizer N timing are the main factors causing low NUE of irrigated rice in the farmer's routine practice of Zhejiang. With SSNM, about 15% of the current total N input in direct-seeding early rice and 45% in single rice could be reduced without yield loss in Zhejiang, China.

  12. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.

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    Wenfei Wang

    2014-03-01

    Full Text Available Unlike many wild grasses, domesticated rice cultivars have uniform culm height and panicle size among tillers and the main shoot, which is an important trait for grain yield. However, the genetic basis of this trait remains unknown. Here, we report that Dwarf Tiller1 (DWT1 controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa. Most dwt1 mutant plants develop main shoots with normal height and larger panicles, but dwarf tillers bearing smaller panicles compared with those of the wild type. In addition, dwt1 tillers have shorter internodes with fewer and un-elongated cells compared with the wild type, indicating that DWT1 affects cell division and cell elongation. Map-based cloning revealed that DWT1 encodes a Wuschel-related homeobox (WOX transcription factor homologous to the Arabidopsis WOX8 and WOX9. The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Transcriptomic analysis revealed altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling in dwt1 shorter internodes. Moreover, the non-elongating internodes of dwt1 are insensitive to exogenous gibberellin (GA treatment, and some of the slender rice1 (slr1 dwt1 double mutant exhibits defective internodes similar to the dwt1 single mutant, suggesting that the DWT1 activity in the internode elongation is directly or indirectly associated with GA signaling. This study reveals a genetic pathway synchronizing the development of tillers and the main shoot, and a new function of WOX genes in balancing branch growth in rice.

  13. DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice

    Science.gov (United States)

    Wang, Wenfei; Li, Gang; Zhao, Jun; Chu, Huangwei; Lin, Wenhui; Zhang, Dabing; Wang, Zhiyong; Liang, Wanqi

    2014-01-01

    Unlike many wild grasses, domesticated rice cultivars have uniform culm height and panicle size among tillers and the main shoot, which is an important trait for grain yield. However, the genetic basis of this trait remains unknown. Here, we report that DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa). Most dwt1 mutant plants develop main shoots with normal height and larger panicles, but dwarf tillers bearing smaller panicles compared with those of the wild type. In addition, dwt1 tillers have shorter internodes with fewer and un-elongated cells compared with the wild type, indicating that DWT1 affects cell division and cell elongation. Map-based cloning revealed that DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9. The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Transcriptomic analysis revealed altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling in dwt1 shorter internodes. Moreover, the non-elongating internodes of dwt1 are insensitive to exogenous gibberellin (GA) treatment, and some of the slender rice1 (slr1) dwt1 double mutant exhibits defective internodes similar to the dwt1 single mutant, suggesting that the DWT1 activity in the internode elongation is directly or indirectly associated with GA signaling. This study reveals a genetic pathway synchronizing the development of tillers and the main shoot, and a new function of WOX genes in balancing branch growth in rice. PMID:24625559

  14. Amplifying the benefits of agroecology by using the right cultivars.

    Science.gov (United States)

    Noguera, D; Laossi, K-R; Lavelle, P; De Carvalho, M H Cruz; Asakawa, N; Botero, C; Barot, S

    2011-10-01

    Tropical soils are particularly vulnerable to fertility losses due to their low capacity to retain organic matter and mineral nutrients. This urges the development of new agricultural practices to manage mineral nutrients and organic matter in a more sustainable way while relying less on fertilizer inputs. Two methods pertaining to ecological engineering and agroecology have been tested with some success: (1) the addition of biochar to the soil, and (2) the maintenance of higher earthworm densities. However, modern crop varieties have been selected to be adapted to agricultural practices and to the soil conditions they lead to and common cultivars might not be adapted to new practices. Using rice as a model plant, we compared the responsiveness to biochar and earthworms of five rice cultivars with contrasted selection histories. These cultivars had contrasted responsivenesses to earthworms, biochar, and the combination of both. The mean relative increase in grain biomass, among all treatments and cultivars, was 94% and 32%, respectively, with and without fertilization. Choosing the best combination of cultivar and treatment led to a more than fourfold increase in this mean benefit (a 437% and a 353% relative increase in grain biomass, respectively, with and without fertilization). Besides, the more rustic cultivar, a local landrace adapted to diverse and difficult conditions, responded the best to earthworms in terms of total biomass, while a modern common cultivar responded the best in term of grain biomass. This suggests that cultivars could be selected to amplify the benefit of biochar- and earthworm-based practices. Overall, selecting new cultivars interacting more closely with soil organisms and soil heterogeneity could increase agriculture sustainability, fostering the positive feedback loop between soils and plants that has evolved in natural ecosystems.

  15. Identification of Floral Scent in Chrysanthemum Cultivars and Wild Relatives by Gas Chromatography-Mass Spectrometry

    Directory of Open Access Journals (Sweden)

    Hainan Sun

    2015-03-01

    Full Text Available The objective of this study was to identify the major volatile compounds and their relative concentrations in flowers of different chrysanthemum cultivars and their wild relatives. The volatile organic components of fresh flowers were analyzed using a headspace solid-phase microextraction coupled with gas chromatography-mass spectrometry. In total, 193 volatile organic components were detected; the major scent components were monoterpenoids and oxygenated monoterpenoids, which accounted for 68.59%–99.93% of the total volatiles in all tested materials except for Chrysanthemum indicum collected from Huangshan, in which they accounted for only 37.45% of total volatiles. The major volatile compounds were camphor, α-pinene, chrysanthenone, safranal, myrcene, eucalyptol, 2,4,5,6,7,7ab-hexahydro-1H-indene, verbenone, β-phellandrene and camphene. In a hierarchical cluster analysis, 39 accessions of Chrysanthemum and its relatives formed six clusters based on their floral volatile compounds. In a principal component analysis, only spider type flowers were located closely on the score plot. The results of this study provide a basis for breeding chrysanthemum cultivars which desirable floral scents.

  16. Comparison of the role of gibberellins and ethylene in response to submergence of two lowland rice cultivars, Senia and Bomba.

    Science.gov (United States)

    Dubois, Vincent; Moritz, Thomas; García-Martínez, José L

    2011-02-15

    We examined the gibberellin (GA) and ethylene regulation of submergence-induced elongation in seedlings of the submergence-tolerant lowland rice (Oryza sativa L.) cvs Senia and Bomba. Elongation was enhanced after germination to facilitate water escape and reach air. We found that submergence-induced elongation depends on GA because it was counteracted by paclobutrazol (an inhibitor of GA biosynthesis), an effect that was negated by GA(3). Moreover, in the cv Senia, submergence increased the content of active GA(1) and its immediate precursors (GA(53), GA(19) and GA(20)) by enhancing expression of several GA biosynthesis genes (OsGA20ox1 and -2, and OsGA3ox2), but not by decreasing expression of several OsGA2ox (GA inactivating genes). Senia seedlings, in contrast to Bomba seedlings, did not elongate in response to ethylene or 1-aminocyclopropane-1-carboxylic-acid (ACC; an ethylene precursor) application, and submergence-induced elongation was not reduced in the presence of 1-methylcyclopropene (1-MCP; an ethylene perception inhibitor). Ethylene emanation was similar in Senia seedlings grown in air and in submerged-grown seedlings following de-submergence, while it increased in Bomba. The expression of ethylene biosynthesis genes (OsACS1, -2 and -3, and OsACO1) was not affected in Senia, but expression of OsACS5 was rapidly enhanced in Bomba upon submergence. Our results support the conclusion that submergence elongation enhancement of lowland rice is due to alteration of GA metabolism leading to an increase in active GA (GA(1)) content. Interestingly, in the cv Senia, in contrast to cv Bomba, this was triggered through an ethylene-independent mechanism. Copyright © 2010 Elsevier GmbH. All rights reserved.

  17. Similar traits, different genes? Examining convergent evolution in related weedy rice populations.

    Science.gov (United States)

    Thurber, Carrie S; Jia, Melissa H; Jia, Yulin; Caicedo, Ana L

    2013-02-01

    Convergent phenotypic evolution may or may not be associated with convergent genotypic evolution. Agricultural weeds have repeatedly been selected for weed-adaptive traits such as rapid growth, increased seed dispersal and dormancy, thus providing an ideal system for the study of convergent evolution. Here, we identify QTL underlying weedy traits and compare their genetic architecture to assess the potential for convergent genetic evolution in two distinct populations of weedy rice. F(2) offspring from crosses between an indica cultivar and two individuals from genetically differentiated U.S. weedy rice populations were used to map QTL for four quantitative (heading date, seed shattering, plant height and growth rate) and two qualitative traits. We identified QTL on nine of the twelve rice chromosomes, yet most QTL locations do not overlap between the two populations. Shared QTL among weed groups were only seen for heading date, a trait for which weedy groups have diverged from their cultivated ancestors and from each other. Sharing of some QTL with wild rice also suggests a possible role in weed evolution for genes under selection during domestication. The lack of overlapping QTL for the remaining traits suggests that, despite a close evolutionary relationship, weedy rice groups have adapted to the same agricultural environment through different genetic mechanisms. © 2012 Blackwell Publishing Ltd.

  18. Mosquitoes of the rice agroecosystem of Malaysia: species composition and their abundance in relation to rice farming

    International Nuclear Information System (INIS)

    Abu Hassan Ahmad; Che Salmah Md Rawi

    2002-01-01

    Mosquito abundance in relation to rice farming was studied in the Muda and the Kerian Irrigation Schemes. Mosquito larvae were collected using dippers for several growing seasons. Adult mosquitoes were collected by using human bait and cow bait and net trap at nights. Culex, Mansonia and Anopheles were the three genera of mosquito found in the rice agroecosystem. Four species of Mansonia were found biting on human bait. Culex mosquitoes were caught biting on human and cow baits. Culex tritaeniorhynchus, C pseudovishnui, C vishnui, C gelidus and C bitaeniorhynchus were the most common Culex mosquitoes found. Anoheles sinensis and A. peditaeniatus were the most dominant panopheline mosquitoes. High abundance of larvae and adult mosquitoes were observed during ploughing, planting, and tillering stages of rice farming. (Author)

  19. Variation in the Abundance of OsHAK1 Transcript Underlies the Differential Salinity Tolerance of an indica and a japonica Rice Cultivar

    Directory of Open Access Journals (Sweden)

    Guang Chen

    2018-01-01

    Full Text Available Salinity imposes a major constraint over the productivity of rice. A set of chromosome segment substitution lines (CSSLs, derived from a cross between the japonica type cultivar (cv. Nipponbare (salinity sensitive and the indica type cv. 9311 (moderately tolerant, was scored using a hydroponics system for their salinity tolerance at the seedling stage. Two of the CSSLs, which share a ∼1.2 Mbp stretch of chromosome 4 derived from cv. Nipponbare, were as sensitive to the stress as cv. Nipponbare itself. Fine mapping based on an F2 population bred from a backcross between one of these CSSLs and cv. 9311 narrowed this region to 95 Kbp, within which only one gene (OsHAK1 exhibited a differential (lower transcript abundance in cv. Nipponbare and the two CSSLs compared to in cv. 9311. The gene was up-regulated by exposure to salinity stress both in the root and the shoot, while a knockout mutant proved to be more salinity sensitive than its wild type with respect to its growth at both the vegetative and reproductive stages. Seedlings over-expressing OsHAK1 were more tolerant than wild type, displaying a superior photosynthetic rate, a higher leaf chlorophyll content, an enhanced accumulation of proline and a reduced level of lipid peroxidation. At the transcriptome level, the over-expression of OsHAK1 stimulated a number of stress-responsive genes as well as four genes known to be involved in Na+ homeostasis and the salinity response (OsHKT1;5, OsSOS1, OsLti6a and OsLti6b. When the stress was applied at booting through to maturity, the OsHAK1 over-expressors out-yielded wild type by 25%, and no negative pleiotropic effects were expressed in plants gown under non-saline conditions. The level of expression of OsHAK1 was correlated with Na+/K+ homeostasis, which implies that the gene should be explored a target for molecular approaches to the improvement of salinity tolerance in rice.

  20. Estimation of rice yield affected by drought and relation between rice yield and TVDI

    Science.gov (United States)

    Hongo, C.; Tamura, E.; Sigit, G.

    2016-12-01

    Impact of climate change is not only seen on food production but also on food security and sustainable development of society. Adaptation to climate change is a pressing issue throughout the world to reduce the risks along with the plans and strategies for food security and sustainable development. As a key adaptation to the climate change, agricultural insurance is expected to play an important role in stabilizing agricultural production through compensating the losses caused by the climate change. As the adaptation, the Government of Indonesia has launched agricultural insurance program for damage of rice by drought, flood and pest and disease. The Government started a pilot project in 2013 and this year the pilot project has been extended to 22 provinces. Having the above as background, we conducted research on development of new damage assessment method for rice using remote sensing data which could be used for evaluation of damage ratio caused by drought in West Java, Indonesia. For assessment of the damage ratio, estimation of rice yield is a key. As the result of our study, rice yield affected by drought in dry season could be estimated at level of 1 % significance using SPOT 7 data taken in 2015, and the validation result was 0.8t/ha. Then, the decrease ratio in rice yield about each individual paddy field was calculated using data of the estimated result and the average yield of the past 10 years. In addition, TVDI (Temperature Vegetation Dryness Index) which was calculated from Landsat8 data in heading season indicated the dryness in low yield area. The result suggests that rice yield was affected by irrigation water shortage around heading season as a result of the decreased precipitation by El Nino. Through our study, it becomes clear that the utilization of remote sensing data can be promising for assessment of the damage ratio of rice production precisely, quickly and quantitatively, and also it can be incorporated into the insurance procedures.

  1. Heavy metals screening of rice bran oils and its relation to composition

    Science.gov (United States)

    Rice bran oil contains beneficial compounds that contribute to the high stability of the oil itself, as well as the health of consumers. As a result, rice bran oil has been growing in popularity and is now widely used in many countries. However, concerns have surfaced in recent years related to the ...

  2. Relative expression of genes related with cold tolerance in ...

    African Journals Online (AJOL)

    Low temperature is one of the main abiotic stresses affecting rice yield in Chile. Alterations in phenology and physiology of the crop are observed after a cold event. The objective of this work was to study the relative expression of genes related with cold stress in Chilean cultivars of rice. For this, we analyzed the expression ...

  3. Genotypes analysis of ten genes related to eating quality of 22 Shanghai important rice varieties by molecular marker

    Directory of Open Access Journals (Sweden)

    XIE Mixue

    2013-08-01

    Full Text Available The improvement of rice eating quality is a very important direction of rice breeding.Clearing the different genotype of rice eating quality provides the basis for the parent selection on breeding good eating quality rice.Using molecular marker detection technology,genotypes of ten genes related to eating quality of 22 Shanghai important rice varieties,including conventional rice and hybrid parents were detected.The results showed that "Zixiangnuo 861" rice contained many poor genotypes which might affect rice eating quality.The genotypes of 3 male parents,"Xiangqin","R44" and "Fan14" for three kinds of hybrid rice,"Hannyouxiangqing","Qiuyoujinfeng" and "Huayou14",respectively,were not as good as their corresponding female parents,"HanfengA","JinfengA" and "Shen9A" and another conventional rice varieties.Wx polymorphism analysis showed that there were two glutinous rice,four soft rice japonica and 16 non-soft rice japonica."Baonong34","Jinfeng" and "Yinxiang18" had relatively better genotypes of the genes controlling eating quality among the 16 non-soft rice japonica.

  4. Compared leaf anatomy and water relations of commercial and traditional Prunus dulcis (Mill.) cultivars under rain-fed conditions

    DEFF Research Database (Denmark)

    Oliveira, I.; Meyer, A.; Afonso, S.

    2018-01-01

    Leaf anatomy and water relations of seven almond (Prunus dulcis Mill.) cultivars, traditional (Bonita, Casanova, Parada, Pegarinhos and Verdeal) and commercial (Ferragnès and Glorieta), grown under rain-fed conditions, were studied. The performed measurements included thickness of leaf tissues...... cuticle thickness, while Pegarinhos adds a thicker epidermis and palisade parenchyma to increase protection to water loss. These data is one of the first comparative approaches to the leaf characterization of these cultivars, and should now be combined with physiological and biochemical studies...

  5. Genomic diversity among Basmati rice ( Oryza sativa L) mutants ...

    African Journals Online (AJOL)

    Mutation breeding can be considered successful in obtaining new cultivars and broadening the genetic base of rice crop. In order to obtain new varieties of rice with improved agronomic and grain characteristics, gamma radiation (60Co) has been used to generate novel mutants of the Basmati rice. In this study rice cultivars ...

  6. Evaluation and Exploration of Favorable QTL Alleles for Salt Stress Related Traits in Cotton Cultivars (G. hirsutum L.)

    Science.gov (United States)

    Du, Lei; Cai, Caiping; Wu, Shuang; Zhang, Fang; Hou, Sen; Guo, Wangzhen

    2016-01-01

    Soil salinization is one of the major problems in global agricultural production. Cotton is a pioneer crop with regard to salt stress tolerance, and can be used for saline-alkali land improvement. The large-scale detection of salt tolerance traits in cotton accessions, and the identification of elite quantitative trait loci (QTLs)/genes for salt-tolerance have been very important in salt tolerance breeding. Here, 43 advanced salt-tolerant and 31 highly salt-sensitive cultivars were detected by analyzing ten salt tolerance related traits in 304 upland cotton cultivars. Among them, 11 advanced salt-tolerance and eight highly salt-sensitive cultivars were consistent with previously reported results. Association analysis of ten salt-tolerance related traits and 145 SSRs was performed, and a total of 95 significant associations were detected; 17, 41, and 37 of which were associated with germinative index, seedling stage physiological index, and four seedling stage biochemical indexes, respectively. Of these associations, 20 SSR loci were simultaneously associated with two or more traits. Furthermore, we detected 117 elite alleles associated with salt-tolerance traits, 4 of which were reported previously. Among these loci, 44 (37.60%) were rare alleles with a frequency of less than 5%, 6 only existed in advanced salt-tolerant cultivars, and 2 only in highly salt-sensitive cultivars. As a result, 13 advanced salt-tolerant cultivars were selected to assemble the optimal cross combinations by computer simulation for the development of salt-tolerant accessions. This study lays solid foundations for further improvements in cotton salt-tolerance by referencing elite germplasms, alleles associated with salt-tolerance traits, and optimal crosses. PMID:26943816

  7. Actual and potential salt-related soil degradation in an irrigated rice scheme in the Sahelian zone of Mauritania

    NARCIS (Netherlands)

    Asten, van P.J.A.; Barbi'ro, L.; Wopereis, M.C.S.; Maeght, J.L.; Zee, van der S.E.A.T.M.

    2003-01-01

    Salt-related soil degradation due to irrigation activities is considered a major threat to the sustainability of rice cropping under semi-arid conditions in West Africa. Rice productivity problems related to soil salinity, alkalinity and topographic position were observed in an irrigated rice scheme

  8. Produção de matéria seca, teor e acúmulo de silício em cultivares de arroz sob doses de silício Dry matter production, content and accumulation of silicon in cultivars of rice (Oryza sativa L. under levels of silicon

    Directory of Open Access Journals (Sweden)

    Leilson Antônio de Faria Júnior

    2009-08-01

    Full Text Available O efeito do silício (Si na produção de matéria seca de arroz, teor e acúmulo de Si foi avaliado sob condições de casa-de-vegetação. O delineamento experimental foi o inteiramente casualizado em esquema fatorial 5 x 2 com 4 repetições. Os tratamentos foram 5 doses de Si (0; 0,25; 0,50; 0,75 e 1,00 g dm-3 e 2 cultivares de arroz (Conai e Curinga. A aplicação de Si não afetou os componentes de crescimento e produção, com exceção da matéria seca de raiz. Houve um acréscimo da matéria seca de raiz sob aplicação de Si com uma produção máxima de 33,57 g vaso-1 na dose ajustada de 0,38 g dm-3 de Si. O acúmulo e os teores de Si variaram entre os cultivares, os quais responderam de forma linear ao aumento das doses de Si. Já para o acúmulo de Si na parte aérea não houve diferenças significativas entre cultivares.The effect of silicon (Si application on dry matter production of rice, as well as on the content and accumulation of silicon was evaluated under greenhouse conditions. The experimental design was a completely randomized design arranged in a 5 x 2 factorial structure with four replicates. The treatments consisted of a combination of five Si levels (0, 0.25, 0.50, 0.75, and 1.00 g dm-3 and two rice cultivars (Conai and Curinga. The Si application did not affect the growth and production components except the root dry matter. There was an increase in the root dry matter under Si application with a maximum production of 33.57 g pot-1 in the dose of 0.38 g dm-3 Si. The content and accumulation of Si varied between the cultivars, increasing linearly with the Si levels, except for Si accumulated in the shoot, where no significant differences were observed between the cultivars.

  9. Proposal of a growth chamber for growing Super-Dwarf Rice in Space Agriculture

    Science.gov (United States)

    Hirai, Hiroaki; Kitaya, Yoshiaki; Tsukamoto, Koya; Yamashita, Youichirou; Hirai, Takehiro

    Space agriculture needs to be considered to supply food for space crew who stay in space over an extended time period. So far crops such as wheat, onion, oat, pea and lettuce grew to explore the possibility of space agriculture. Although rice is a staple food for most of the world, research on rice cultivation in space has not been done much. Rice grains are nutrient-rich with carbohydrate, protein and dietary fiber. Moreover, rice is a high yield crop and harvested grains have a long shelf life. However, the plant height of standard rice cultivars is relatively long, requiring much space. In addition, rice plants require higher light intensities for greater yield. For these reasons, it is difficult to establish facilities for rice culture in a limited space with a low cost. We propose to employee a super-dwarf cultivar and a small growth chamber with a new type of LEDs. The super-dwarf rice is a short-grain japonica variety and the plant height is approximately 20 cm that is one-fifth as tall as standard cultivars. The LED light used as a light source for this study can provide full spectrum of 380 nm to 750 nm. Air temperature and humidity were controlled by a Peltier device equipped in the chamber. The characteristics of the new type of LEDs and other equipments of the chamber and the ground based performance of super-dwarf rice plants grown in the chamber will be reported.

  10. Water relation response to soil chilling of six olive (Olea europaea L.) cultivars with different frost resistance

    Energy Technology Data Exchange (ETDEWEB)

    Perez-Lopez, D.; Gijon, M. C.; Marino, J.; Moriana, A.

    2010-07-01

    The relationship between the water relations of six olive cultivars exposed to different soil temperatures (14 0.1, 9.9 0.1 and 5.8 0.2 degree centigrade) and their inherent frost resistance (as determined by two different methods) was investigated. Soil chilling was achieved by introducing pots of olive plants into water baths. The water relations of these plants were compared to those of plants kept under conditions of room temperature. The cultivars Frantoio, Picual and Changlot Real began to show significant dehydration below 14 degree centigrade, while Cornicabra, Arbequina and Ascolana Tenera showed this below 10 degree centigrade. This response is probably due to delayed stomatal closure. Only Cornicabra and Picual showed a significant reduction in leaf conductance (below 10 degree centigrade and 6 degree centigrade respectively). This absence of stomatal control led to a significantly greater dehydration in Ascolana Tenera. These variations in response to the soil chilling temperature suggest that different mechanisms may be at work, and indicate that would be necessary to study the influence of rootstock in the frost resistance of olive plants. The variations recorded grouped the cultivars as either resistant (Cornicabra), tolerant (Picual, Ascolana Tenera and Arbequina), or sensitive (Frantoio and Changlot Real). This classification is in line with the frost resistance reported for these cultivars in the literature, and with the results obtained in the present work using the stomatal density and ion leakage methods of determining such resistance. (Author) 40 refs.

  11. Relative availability of crop residue-N in rice cultivation

    International Nuclear Information System (INIS)

    Sirwando, H; Abdullah, N.

    1988-01-01

    The use of plant residues for soil amendment will reduce the use of chemical fertilizers. The experiment to study the uptake of N from various plant residues by rice crop. Three kinds of plant residue of soybean labelled with 15-N. Four levels of urea (0, 15, 30, 40 kg N/ha) were applied to aluvial soil from Pusakanegara. The factorial experiment was conducted in fully randomize design, with plant residues as the main treatment, and rate of urea as substreatment. The results obtained from this experiment showed that plant dry weight, N content of grain, straw, and the whole plant of Atomita I rice treated with soybean strow seens to be higher than those treated with the straw of rice or corn. (author). 6 refs.; 7 tabs

  12. Analysis of QTLs Associated with the Rice Quality Related Gene by Double Haploid Populations

    Science.gov (United States)

    Lee, Gyu-Ho; Yun, Byung-Wook

    2014-01-01

    We investigated the growth characteristics and analyzed the physicochemical properties of a doubled haploid population derived from a cross between “Cheongcheong” and “Nagdong” to breed a rice variety that tastes good after cooking and to detect quantitative trait loci (QTLs) associated with the taste of cooked rice. The results showed that these compounds also represent a normal distribution. Correlation analysis of the amylose, protein, and lipid contents indicated that each compound is related to the taste of cooked rice. The QTLs related to amylose content were 4 QTLs, protein content was 2 QTLs, and lipid content was 2 QTLs. Four of the QTLs associated with amylose content were detected on chromosomes 7 and 11. The index of coincidence for the QTLs related to amylose, protein, and lipid content was 70%, respectively. These markers showing high percentage of coincidence can be useful to select desirable lines for rice breeding. PMID:25478566

  13. Analysis of QTLs Associated with the Rice Quality Related Gene by Double Haploid Populations

    Directory of Open Access Journals (Sweden)

    Gyu-Ho Lee

    2014-01-01

    Full Text Available We investigated the growth characteristics and analyzed the physicochemical properties of a doubled haploid population derived from a cross between “Cheongcheong” and “Nagdong” to breed a rice variety that tastes good after cooking and to detect quantitative trait loci (QTLs associated with the taste of cooked rice. The results showed that these compounds also represent a normal distribution. Correlation analysis of the amylose, protein, and lipid contents indicated that each compound is related to the taste of cooked rice. The QTLs related to amylose content were 4 QTLs, protein content was 2 QTLs, and lipid content was 2 QTLs. Four of the QTLs associated with amylose content were detected on chromosomes 7 and 11. The index of coincidence for the QTLs related to amylose, protein, and lipid content was 70%, respectively. These markers showing high percentage of coincidence can be useful to select desirable lines for rice breeding.

  14. Cadmium-induced ultramorphological and physiological changes in leaves of two transgenic cotton cultivars and their wild relative

    International Nuclear Information System (INIS)

    Daud, M.K.; Variath, M.T.; Ali, Shafaqat; Najeeb, U.; Jamil, Muhammad; Hayat, Y.; Dawood, M.; Khan, Muhammad Imran; Zaffar, M.; Cheema, Sardar Alam; Tong, X.H.; Zhu Shuijin

    2009-01-01

    The present study describes cadmium-induced alterations in the leaves as well as at the whole plant level in two transgenic cotton cultivars (BR001 and GK30) and their wild relative (Coker 312) using both ultramorphological and physiological indices. With elevated levels of Cd (i.e. 10, 100, 1000 μM), the mean lengths of root, stem and leaf and leaf width as well as their fresh and dry biomasses linearly decreased over their respective controls. Moreover, root, stem and leaf water absorption capacities progressively stimulated, which were high in leaves followed by roots and stems. BR001 accumulated more cadmium followed by GK30 and Coker 312. Root and shoot cadmium uptakes were significantly and directly correlated with each other as well as with leaf, stem and root water absorption capacities. The ultrastructural modifications in leaf mesophyll cells were triggered with increase in Cd stress regime. They were more obvious in BR001 followed by GK30 and Coker 312. Changes in morphology of chloroplast, increase in number and size of starch grains as well as increase in number of plastoglobuli were the noticed qualitative effects of Cd on photosynthetic organ. Cd in the form of electron dense granules could be seen inside the vacuoles and attached to the cell walls in all these cultivars. From the present experiment, it can be well established that both apoplastic and symplastic bindings are involved in Cd detoxification in these cultivars. Absence of tonoplast invagination reveals that Cd toxic levels did not cause water stress in any cultivars. Additionally, these cultivars possess differential capabilities towards Cd accumulation and its sequestration.

  15. Analysis of methylated patterns and quality-related genes in tobacco (Nicotiana tabacum) cultivars.

    Science.gov (United States)

    Jiao, Junna; Jia, Yanlong; Lv, Zhuangwei; Sun, Chuanfei; Gao, Lijie; Yan, Xiaoxiao; Cui, Liusu; Tang, Zongxiang; Yan, Benju

    2014-08-01

    Methylation-sensitive amplified polymorphism was used in this study to investigate epigenetic information of four tobacco cultivars: Yunyan 85, NC89, K326, and Yunyan 87. The DNA fragments with methylated information were cloned by reamplified PCR and sequenced. The results of Blast alignments showed that the genes with methylation information included chitinase, nitrate reductase, chloroplast DNA, mitochondrial DNA, ornithine decarboxylase, ribulose carboxylase, and promoter sequences. Homologous comparison in three cloned gene sequences (nitrate reductase, ornithine decarboxylase, and ribulose decarboxylase) indicated that geographic factors had significant influence on the whole genome methylation. Introns also contained different information in different tobacco cultivars. These findings suggest that synthetic mechanisms for tobacco aromatic components could be affected by different environmental factors leading to variation of noncoding regions in the genome, which finally results in different fragrance and taste in different tobacco cultivars.

  16. Do the rich always become richer? Characterizing the leaf physiological response of the high-yielding rice cultivar Takanari to free-air CO2 enrichment.

    Science.gov (United States)

    Chen, Charles P; Sakai, Hidemitsu; Tokida, Takeshi; Usui, Yasuhiro; Nakamura, Hirofumi; Hasegawa, Toshihiro

    2014-02-01

    The development of crops which are well suited to growth under future environmental conditions such as higher atmospheric CO2 concentrations ([CO2]) is essential to meeting the challenge of ensuring food security in the face of the growing human population and changing climate. A high-yielding indica rice variety (Oryza sativa L. cv. Takanari) has been recently identified as a potential candidate for such breeding, due to its high productivity in present [CO2]. To test if it could further increase its productivity under elevated [CO2] (eCO2), Takanari was grown in the paddy field under season-long free-air CO2 enrichment (FACE, approximately 200 µmol mol(-1) above ambient [CO2]) and its leaf physiology was compared with the representative japonica variety 'Koshihikari'. Takanari showed consistently higher midday photosynthesis and stomatal conductance than Koshihikari under both ambient and FACE growth conditions over 2 years. Maximum ribulose-1,5-bisphosphate carboxylation and electron transport rates were higher for Takanari at the mid-grain filling stage in both years. Mesophyll conductance was higher in Takanari than in Koshihikari at the late grain-filling stage. In contrast to Koshihikari, Takanari grown under FACE conditions showed no decrease in total leaf nitrogen on an area basis relative to ambient-grown plants. Chl content was higher in Takanari than in Koshihikari at the same leaf nitrogen level. These results indicate that Takanari maintains its superiority over Koshihikari in regards to its leaf-level productivity when grown in elevated [CO2] and it may be a valuable resource for rice breeding programs which seek to increase crop productivity under current and future [CO2].

  17. Black rice as a functional food in Indonesia

    Directory of Open Access Journals (Sweden)

    Rarastoeti Pratiwi

    2017-03-01

    Full Text Available There are many local black rice cultivars in Indonesia, yet only a few of these are formally describedin the literature.It has been reportedthat black rice has many phytochemicalvariants which may contribute to its use as a functional food, including nutraceuticals andsecondary metabolites such as anthocyanin, oryzanol,and more.The purpose of this article wasto review literature describing black rice cultivars from Indonesia, with a particular focuson its potential use as a functional food.Our literature search revealed several articles that describe black rice in relation to its nutraceuticalproperties and its role in reducing non-communicable diseases. Other studies describe the diversity of local pigmented rice and its potentialfor lowering the risk of hyperlipidemia,hyperglycemia,and for cancer prevention. Black rice has been described as a functional food in several countries;however,there is great diversity among cultivars and further research on Indonesian varieties will determine whether local variants are candidates as well for the development of functional foods.

  18. Dietary supplementation of germinated pigmented rice (Oryza sativa L. lowers dyslipidemia risk in ovariectomized Sprague–Dawley rats

    Directory of Open Access Journals (Sweden)

    Lara Marie Pangan Lo

    2016-03-01

    Full Text Available Background: In the recent years, cases of elderly women suffering from metabolic diseases such as dyslipidemias brought about by hormonal imbalance after menopause are continuously increasing. In this regard, a continuous and escalating demand to develop a more functional and highly nutritional food product as an adjunct supplement that can help alleviate these diseases is still being sought. Objective: This study investigated the effects of germinated blackish-purple rice cultivars Keunnunjami, Superjami, and reddish-brown cultivar Superhongmi in the lipid metabolism of ovariectomized Sprague–Dawley rats. Method: The animals were randomly divided into nine groups (n=5 and were supplemented with either non-germinated or germinated rice for 9 weeks. Then the plasma, liver, and fat samples were collected for the lipid metabolism effects analyses. Results: Animals fed with germinated rice cultivars had improved lipid profile levels relative to the groups supplemented with non-germinated rice cultivars. The germinated rice groups, Keununjami and Superjami in particular, showed a low total cholesterol levels, high levels of high-density lipoproteins-cholesterol, high fecal lipid output, low hepatic lipid values, and low hepatic adipocyte accumulation. There was also an increase in the rate of lipolysis and decrease in lipogenesis based on the lipid-regulating enzyme activity profiles obtained for the groups that fed on germinated rice. Also, results revealed that pigmented rice cultivars had superior effects in improving the lipid metabolism relative to the non-pigmented normal brown rice variety. Conclusion: Based on the results, this study suggests that germinated pigmented rice consumption can confer better lipid metabolism than ordinary white rice and constitutes as an effective functional food in alleviating the risk of having dyslipidemias like those suffering from menopausal co-morbidities.

  19. Profundidade da amostragem de solo e de raízes e índice de infestação de Oryzophagus oryzae (Costa Lima, 1936 (Coleoptera: Curculionidae em cultivares de arroz Sampling depth of soil and roots and Oryzophagus oryzae (Costa Lima, 1936 (Coleoptera: Curculionidae infestation index in rice cultivars

    Directory of Open Access Journals (Sweden)

    Márcio Bartz das Neves

    2011-12-01

    . Concluiu-se que, num Planossolo Háplico, amostras de solo e de raízes de arroz retiradas à profundidade de 6cm são mais apropriadas à captura e à visualização de larvas de O. oryzae, na suspensão (solo e água formada nas peneiras usadas para a sua contagem, e à obtenção de adultos desse inseto.Oryzophagus oryzae is the key insect pest in flooded rice fields in southern Brazil. Their larvae, known as rice water weevil cause significant yield losses when they cut the roots of rice plants. For the monitoring and survey of the larval population of O. oryzae, on rice fields and rice trials, respectively, are currently used standard samples of soil and roots, with 8.5cm deep and 10cm wide, blown away by submersion and shaking in a sieve with water for the counting of larvae. The visualization of larvae, especially the 1st and 2nd instars, becomes difficult in the suspension formed by the soil samples with these dimensions and the water inside the sieves. Thus, an experiment was conducted in a Typic Albaqualf soil according to the Latin square design to determine a sampling depth of soil and roots that makes possible the capture and display a larger number of larvae in a smallest possible volume of soil, in different rice cultivars. The treatments consisted of six rice cultivars ('BRS Atalanta'; 'BRS Firmeza'; 'BRS Ligeirinho'; 'BRS Querência'; 'BRS Sinuelo CL'; 'IRGA 417' and three depths (3, 6 and 9cm for removing samples of soil and roots, every 10cm diameter. In the immediate withdrawal of samples, it was announced the number of larvae. Subsequently, in periodic evaluations, it was announced the number of adults emerged from samples kept intact in plastic buckets with water depth of 13, 16 and 19cm, covered by screened mesh fabric. It was detected a significant interaction between sampling depths and the rice cultivars 'BRS Sinuelo CL' and 'BRS Querência' in the rate of infestation of larvae and adults of O. oryzae, respectively. In the case of both variables

  20. Improvement of rice starch by gamma irradiation

    International Nuclear Information System (INIS)

    Duan Zhiying; Wu Dianxing; Shen Shengquan; Han Juanying; Xia Yingwu

    2003-01-01

    Three types of rice cultivars, Indica, Japonica and hybrid rice, with similar intermediate apparent amylose content (AAC) as well as early Indica rice cultivars with different amounts of AAC were selected for studying the effects of gamma irradiation on starch viscosity, physico-chemical properties and starch granule structure. Four major parameters of RVA profile, peak viscosity (PKV), hot paste viscosity (HPV), cool paste viscosity (CPV), setback viscosity (SBV) and consistence viscosity (CSV) were considerably decreased with increasing dose levels. Gamma irradiation reduced the amylose contents in the cultivars with low AAC, intermediate AAC, and glutinous rice, but had no effects on the high AAC cultivar. No visible changes in alkali spreading value (ASV) were detected after irradiation, but the peak time (PKT) were reduced with the dose level. Gel consistency (GC) were significantly increased in the tested cultivars, especially in the high AAC Indica rice, suggesting that it is promising to use gamma irradiation to improve eating and cooking quality of rice

  1. Rainfed Rice Production and there Germplasm Development in Kenya

    International Nuclear Information System (INIS)

    Onyango, J.C.; Onyango, M.O.A.

    1999-01-01

    Rice (Oryza Sativa L.) has been grown in Kenya for several centuries and during this time has been locally selected by farmers for adaptation in the dry climate of Kenya highlands and coastal region. this history of selection by farmers has led to the concentration of genetic information for performance under drought conditions in locally-adapted rice types. Since water availability affects many processes in plants, drought tolerance is a complex character and due to the complex nature of the drought tolerance limited progress has been made in breeding for drought tolerance using simple screening methods. To produce drought tolerant cultivars, characters can used as parents in a breeding program, this is a two step process. Obviously, the root system is central to drought tolerance. The root system must be able to remove water efficiently from soils with low moisture and withstand the dynamics of soil during drought conditions will prevent stomata closure and maximise photosynthesis which is essential for high crop production. Over 365 cultivars of rainfed rice have been identified in Kenya and can be used in the two step process as source material for identifying characters related to drought tolerance and as parental lines. To advance the first step, research was conducted to identify drought tolerance characters in rainfed cultivars from Kenya. The study had a total of 580 mm of rainfall which was below the mean precipitation requirement of 750 mm. The drought sensitive variety IR20 was compared with drought tolerant IR52 and five KR (Kenya Rice) KR21, KR22, KR35,KR108 and KR135 cultivars. Plant biomass, plant height, leaf area, leaf length, protein: chlorophyll content ratio and grain yield were affected by limiting water availability and differences between cultivars were noted. The protein to chlorophyll ratio in leaves in the KR. cultivars increase from 18.4 to 28.0 as water deficient increases from -0.8 mpa to -1.4 Mpa allowing these cultivars to maintain

  2. Relative Susceptibility of Quince, Pear, and Apple Cultivars to Fire Blight Following Greenhouse Inoculation

    Science.gov (United States)

    Fire blight caused by Erwinia amylovora (EA) is one of the most serious diseases of plants in the family Rosaceae, and Quince (Cydonia oblonga Mill.) is considered one of the most susceptible host genera. Apple (Malus sp.) and pear (Pyrus sp.) cultivars ranging from most susceptible to most resistan...

  3. Analysis on Factors Affecting Seedling Establishment in Rice

    Directory of Open Access Journals (Sweden)

    Ju LUO

    2007-03-01

    Full Text Available Elongations of coleoptile and mesocotyl are related directly to rice seedling establishment in soil and height of plant is related to lodging in rice production. Twelve typical rice cultivars with different lengths of coleoptile and mesocotyl (long, medium and short were selected by screening the lengths of coleoptile and mesocotyl in 1500 accessions. The seedling establishments of these typical cultivars were compared under the combinations of different sowing depths and flooding durations, and two semi-dwarf varieties (G140, Zhong 96–21 with good seedling establishments and optimum mesocotyl lengths were found. The length of mesocotyl was completely fitted negative binomial distribution and the length of coleoptile was nearly fitted lognormal distribution. Analysis of the relationships among mesocotyl, coleoptile, seeding depth, flooding duration, and their interactions to seedling establishment percentage showed that there existed significant relations among mesocotyl, coleoptile, mesocotyl × coleoptile, seeding depth, flooding duration and mesocotyl × sowing depth in the experiment for seedling establishment.

  4. Molecular evolution of shattering loci in U.S. weedy rice.

    Science.gov (United States)

    Thurber, Carrie S; Reagon, Michael; Gross, Briana L; Olsen, Kenneth M; Jia, Yulin; Caicedo, Ana L

    2010-08-01

    Cultivated rice fields worldwide are plagued with weedy rice, a conspecific weed of cultivated rice (Oryza sativa L.). The persistence of weedy rice has been attributed, in part, to its ability to shatter (disperse) seed prior to crop harvesting. In the United States, separately evolved weedy rice groups have been shown to share genomic identity with exotic domesticated cultivars. Here, we investigate the shattering phenotype in a collection of U.S. weedy rice accessions, as well as wild and cultivated relatives. We find that all U.S. weedy rice groups shatter seeds easily, despite multiple origins, and in contrast to a decrease in shattering ability seen in cultivated groups. We assessed allelic identity and diversity at the major shattering locus, sh4, in weedy rice; we find that all cultivated and weedy rice, regardless of population, share similar haplotypes at sh4, and all contain a single derived mutation associated with decreased seed shattering. Our data constitute the strongest evidence to date of an evolution of weeds from domesticated backgrounds. The combination of a shared cultivar sh4 allele and a highly shattering phenotype, suggests that U.S. weedy rice have re-acquired the shattering trait after divergence from their progenitors through alternative genetic mechanisms.

  5. Uncooked rice of relatively low gelatinization degree resulted in lower metabolic glucose and insulin responses compared with cooked rice in female college students.

    Science.gov (United States)

    Jung, Eun Young; Suh, Hyung Joo; Hong, Wan Soo; Kim, Dong Geon; Hong, Yang Hee; Hong, In Sun; Chang, Un Jae

    2009-07-01

    Cooking processes that gelatinize granules or disrupt structure might increase the glucose and insulin responses because a disruption of the structure of starch by gelatinization increases its availability for digestion and absorption in the small intestine. We hypothesized that the uncooked form of rice, which has a relatively low degree of gelatinization even though in powder form, would result in lower metabolic glucose and insulin responses compared with cooked rice (CR). To assess the effects of the gelatinization of rice on metabolic response of glucose and insulin, we investigated the glucose and insulin responses to 3 rice meals of different gelatinization degree in female college students (n = 12): CR (76.9% gelatinized), uncooked rice powder (UP; 3.5% gelatinized), and uncooked freeze-dried rice powder (UFP; 5.4% gelatinized). Uncooked rice powders (UP and UFP) induced lower glucose and insulin responses compared with CR. The relatively low gelatinization degree of UPs resulted in low metabolic responses in terms of the glycemic index (CR: 72.4% vs UP: 49.7%, UFP: 59.8%) and insulin index (CR: 94.8% vs UP: 74.4%, UFP: 68.0%). In summary, UPs that were less gelatinized than CR induced low postprandial glucose and insulin responses.

  6. Steam-blanched highbush blueberry (Vaccinium corymbosum L.) juice: phenolic profile and antioxidant capacity in relation to cultivar selection.

    Science.gov (United States)

    Brambilla, Ada; Lo Scalzo, Roberto; Bertolo, Gianni; Torreggiani, Danila

    2008-04-23

    High-quality standards in blueberry juice can be obtained only taking into account fruit compositional variability and its preservation along the processing chain. In this work, five highbush blueberry cultivars from the same environmental growing conditions were individually processed into juice after an initial blanching step and the influence was studied of the cultivar on juice phenolic content, distribution and relative antioxidant activity, measured as scavenging capacity on the artificial free-radical 2,2-diphenyl-1-picrylhydrazyl (DPPH*). A chromatographic protocol was developed to separate all main phenolic compounds in berries. A total of 15 glycosylated anthocyanins, catechin, galactoside, glucoside, and rhamnoside quercetin 3-derivatives, and main benzoic and cinnamic acids were identified. The total content and relative distribution in anthocyanins, chlorogenic acid, and quercetin of each juice were dependent upon cultivar, and the total content was highly correlated (rxy=0.97) to the antioxidant capacity. A selective protective effect of berry blanching in juice processing can be observed on more labile anthocyanin compounds.

  7. Effects of manganese oxide-modified biochar composites on arsenic speciation and accumulation in an indica rice (Oryza sativa L.) cultivar.

    Science.gov (United States)

    Yu, Zhihong; Qiu, Weiwen; Wang, Fei; Lei, Ming; Wang, Di; Song, Zhengguo

    2017-02-01

    A pot experiment was used to investigate arsenic (As) speciation and accumulation in rice, as well as its concentration in both heavily contaminated and moderately contaminated soils amended with manganese oxide-modified biochar composites (MBC) and biochar alone (BC). In heavily As-contaminated soil, application of BC and MBC improved the weight of above-ground part and rice root, whereas in moderately As-contaminated soil, the application of MBC and low rate BC amendment increased rice root, grain weight and the biomass of the plant. Arsenic reduction in different parts of rice grown in MBC-amended soils was greater than that in plants cultivated in BC-amended soils. Such reduction can be attributed to the oxidation of arsenite, As(III), to arsenate, As(V), by Mn-oxides, which also had a strong adsorptive capacity for As(V). MBC amended to As-contaminated soil had a positive effect on amino acids. The Fe and Mn levels in the iron-manganese plaque that formed on the rice root surface differed among the treatments. MBC addition significantly increased Mn content (p rice. Copyright © 2016 Elsevier Ltd. All rights reserved.

  8. Introgression of Blast Resistance Genes (Putative Pi-b and Pi-kh) into Elite Rice Cultivar MR219 through Marker-Assisted Selection

    Science.gov (United States)

    Tanweer, Fatah A.; Rafii, Mohd Y.; Sijam, Kamaruzaman; Rahim, Harun A.; Ahmed, Fahim; Ashkani, Sadegh; Latif, Mohammad A.

    2015-01-01

    Blast is the most common biotic stress leading to the reduction of rice yield in many rice-growing areas of the world, including Malaysia. Improvement of blast resistance of rice varieties cultivated in blast endemic areas is one of the most important objectives of rice breeding programs. In this study, the marker-assisted backcrossing strategy was applied to improve the blast resistance of the most popular Malaysian rice variety MR219 by introgressing blast resistance genes from the Pongsu Seribu 2 variety. Two blast resistance genes, Pi-b and Pi-kh, were pyramided into MR219. Foreground selection coupled with stringent phenotypic selection identified 15 plants homozygous for the Pi-b and Pi-kh genes, and background selection revealed more than 95% genome recovery of MR219 in advanced blast resistant lines. Phenotypic screening against blast disease indicated that advanced homozygous blast resistant lines were strongly resistant against pathotype P7.2 in the blast disease endemic areas. The morphological, yield, grain quality, and yield-contributing characteristics were significantly similar to those of MR219. The newly developed blast resistant improved lines will retain the high adoptability of MR219 by farmers. The present results will also play an important role in sustaining the rice production of Malaysia. PMID:26734013

  9. INFLUENCE OF TEMPERATURE AND RELATIVE HUMIDITY ON GRAIN MOISTURE, GERMINATION AND VIGOUR OF THREE WHEAT CULTIVARS DURING ONE YEAR STORAGE

    Directory of Open Access Journals (Sweden)

    Ivica Strelec

    2010-12-01

    Full Text Available Changes in grain moisture, germination and vigour of three wheat cultivars packed in paper bags and stored for one year under four different conditions of environmental temperature and relative humidity (RH were investigated. During the first ninety days of storage significant reduction in grain moisture content of 4, 2.5 and 0.9 %, respectively, under 40 °C, 25 °C and 4 °C and RH of 45 % occurred. Subsequently grain moisture remained constant until the end of storage. Seeds of examined cultivars lost their germination ability and vigour only under elevated storage temperatures. Germination and vigour loss after one year of storage differed between cultivars being higher for seeds kept under 40°C, RH = 45% (35-85 % and 55-94 %, respectively, than under 25°C, RH = 45 % (10-20 % and 15-22 %, respectively. Obtained data indicate significant influence of storage conditions on moisture content, germination and vigour changes during storage of wheat seeds, as well as varietal dependence of seed viability.

  10. Relative resistance or susceptibility of maple (Acer) species, hybrids and cultivars to six arthropod pests of production nurseries.

    Science.gov (United States)

    Seagraves, Bonny L; Redmond, Carl T; Potter, Daniel A

    2013-01-01

    Maples (Acer spp.) in production nurseries are vulnerable to numerous arthropod pests that can stunt or even kill the young trees. Seventeen cultivars representing various Acer species and hybrids were evaluated for extent of infestation or injury by shoot and trunk borers (Proteoteras aesculana, Chrysobothris femorata), potato leafhopper (Empoasca fabae), Japanese beetle (Popillia japonica), maple spider mite (Oligonychus aceris) and calico scale (Eulecanium cerasorum). Evaluations were done in replicated field plots in central and western Kentucky. All of the maples were susceptible, to varying degrees, to one or more key pest(s). Red maples (A. rubrum) were relatively vulnerable to potato leafhopper injury and borers but nearly free of Japanese beetle feeding and spider mites. Sugar maples sustained conspicuous Japanese beetle damage but had very low mite populations, whereas the opposite was true for Freeman maples (A. × freemanii). A. campestre was heavily infested by calico scale. Within each species or hybrid there were cultivar differences in degree of infestation or damage by particular pests. The results should help growers to focus pest management efforts on those plantings at greatest risk from particular pests, and to choose cultivars requiring fewer insecticide inputs to produce a quality tree. Copyright © 2012 Society of Chemical Industry.

  11. Expression Analysis of Genes Related to Rice Resistance Against Brown Planthopper, Nilaparvata lugens

    Directory of Open Access Journals (Sweden)

    Panatda Jannoey

    2017-05-01

    Full Text Available Brown planthopper (BPH is an insect species that feeds on the vascular system of rice plants. To examine the defence mechanism of rice plants against BPH, the pathogenesis-related genes (PR1a, PR2, PR3, PR4, PR6, PR9, PR10a, PR13, PR15 and PRpha, signaling molecule synthesis genes (AOS, AXR, ACO and LOX, antioxidant-related genes (CAT, TRX, GST and SOD and lignin biosynthesis-related genes (CHS, CHI and C4H were investigated in a resistant rice variety. AOS, PR6, PR9 and PR15 genes showed significantly increased relative expression levels at 24.38-, 19.17-, 14.71-, and 12.74-fold compared to the control. Moderate increased relative expression levels of lignin biosynthesis-related gene (C4H, pathogenesis-related genes (PR4, PR10a and PRpha, and antioxidant-related gene (GST were found, while CHI, LOX, SOD, TRX1 and AXR showed decreased relative expression levels. It was thus clearly shown that wound-induced response genes were activated in rice plants after BPH attacks through AOS activation. Jasmonic acid signaling molecule may activate PR6, PR15, GST and CAT subsequently increasing their expression for H2O2 detoxification. PR6 were expressed at the highest relative level among the PR genes. These genes therefore have also a considerable synergistic role with the other genes against BPH by interfered their digestion tract system.

  12. Field trial of GABA-fortified rice plants and oral administration of milled rice in spontaneously hypertensive rats.

    Science.gov (United States)

    Kowaka, Emi; Shimajiri, Yasuka; Kawakami, Kouhei; Tongu, Miki; Akama, Kazuhito

    2015-06-01

    Hypertension is one of the most critical risk factors accompanying cardiovascular diseases. γ-Aminobutyric acid (GABA) is a non-protein amino acid that functions as a major neurotransmitter in mammals and also as a blood-pressure lowering agent. We previously produced GABA-fortified rice lines of a popular Japonica rice cultivar 'Koshihikari' by genetic manipulation of GABA shunt-related genes. In the study reported here, we grew these same novel rice lines in a field trial and administered the milled rice orally to rats. The yield parameters of the transgenic rice plants were almost unchanged compared to those of untransformed cv. 'Koshihikari' plants, while the rice grains of the transgenic plants contained a high GABA content (3.5 g GABA/kg brown rice; 0.75-0.85 GABA g/kg milled rice) in a greenhouse trial. Oral administration of a diet containing 2.5% GABA-fortified rice, with a daily intake for 8 weeks, had an approximately 20 mmHg anti-hypertensive effect in spontaneous hypertensive rats but not in normotensive Wistar-Kyoto rats. These results suggest that GABA-fortified rice may be applicable as a staple food to control or prevent hypertension.

  13. Flavour Characters of Wines from Cool-Climate Grape Cultivars in Relation to Different Fermentation Approaches

    DEFF Research Database (Denmark)

    Liu, Jing

    -climate grape cultivars have been grown. However there is little knowledge on the flavour properties and potential of Danish wines. The overall aim of this project was to investigate the sensory characters and chemical composition of wines from different cool-climate grape cultivars and co-fermentations...... caused by inadequate sulphite management, which resulted in accelerated aging, oxidation and/or spontaneous malolactic fermentation. These findings indicated that producers in Denmark should be more cautious in their use and management of sulphite in wine making. To develop a rapid methodology...... for evaluating sensory properties of wines, different variations of Napping and Flash Profile methods were tested using model wines. It turned out that conducting Napping with panel training on either the method (training on how to arrange samples on the sheet) or the product (familiarization with the sensory...

  14. Physiology and productivity of rice crop influenced by drought stress ...

    African Journals Online (AJOL)

    Rice is sensitive to moisture stress and in view of the water scarcity in the coming years, it is imperative to evaluate the performance of rice cultivar under moisture deficit. The present study aimed to evaluate the physiological responses of two rice cultivars under drought stress induced at panicle initiation and soft dough ...

  15. Temperature-dependent respiration-growth relations in ancestral maize cultivars

    Science.gov (United States)

    Bruce N. Smith; Jillian L. Walker; Rebekka L. Stone; Angela R. Jones; Lee D. Hansen

    2001-01-01

    Shoots from 4- to 6-day old seedlings of seven ancestral or old cultivars of Zea mays L. were placed in a calorimeter. Dark metabolic heat rate (q) and CO2 production rate (RCO2) were measured at nine temperatures (5, 10, 15, 20, 25, 30, 35, 40, and 45 °C). Temperature dependencies of q and RCO2 were used to model response of both growth and substrate carbon conversion...

  16. Meiotic analysis and FISH with rDNA and rice BAC probes of the Thai KPS 01-01-25 sugarcane cultivar

    NARCIS (Netherlands)

    Thumjamras, Sarut; Iamtham, Siriluck; Prammanee, Siripatr; Jong, de Hans

    2016-01-01

    The interspecific sugarcane hybrid “KPS 01-01-25” is one of Thailand’s most successful cultivars, but its genetics and genomic constitution are greatly complicated due to the highly polyploid nature of this crop. Here we analyzed the crop’s karyotype, studied chromosome pairing at meiosis I and

  17. Effects of Surface Charge and Functional Groups on the Adsorption and Binding Forms of Cu and Cd on Roots of indica and japonica Rice Cultivars

    Directory of Open Access Journals (Sweden)

    Zhao-Dong Liu

    2017-08-01

    Full Text Available This work was designed to understand the mechanisms of adsorption of copper (Cu and cadmium (Cd on roots of indica and japonica varieties of rice. Six varieties each of indica and japonica rice were grown in hydroponics and the chemical properties of the root surface were analyzed, including surface charges and functional groups (-COO- groups as measured by the streaming potential and attenuated total reflectance-Fourier transform infrared spectroscopy (ATR-FTIR. Binding forms of heavy metals adsorbed on rice roots were identified using sequential extraction methods. In rice roots exposed to Cu and Cd solutions, Cu existed mainly in both exchangeable and complexed forms, whereas Cd existed mainly in the exchangeable form. The amounts of exchangeable Cu and Cd and total adsorbed metal cations on the roots of indica varieties were significantly greater than those on the roots of japonica varieties, and the higher negative charges and the larger number of functional groups on the roots of indica varieties were responsible for their higher adsorption capacity and greater binding strength for Cu and Cd. Surface charge and functional groups on roots play an important role in the adsorption of Cu and Cd on the rice roots.

  18. Dolce Vita in the Rice Paddy - Characterization of weedy rice groups in Northern Italy and investigation of their evolutionary origins

    OpenAIRE

    Grimm, Annabelle

    2014-01-01

    The thesis deals with the topic of the invasive rice form called weedy rice or red rice. Studies focused on the geographical area of Italy. Different populations of weedy rice in Italy were genetically characterized. The evolutionary origins of different weedy rice groups were investigated using molecular, morphological and physiological methods. Invasion of wild rice as well as de-domestication of cultivars could be identified as evolutionary sources of weedy rice in Northern Italy.

  19. Períodos de interferência das plantas daninhas na cultura do arroz de terras altas. II - cultivar Caiapó Interference periods of weeds in the upland rice - Caiapó variety

    Directory of Open Access Journals (Sweden)

    Maria Rosangela Malheiros Silva

    2009-01-01

    Full Text Available Os experimentos foram desenvolvidos nos anos agrícolas 2003/2004 e 2004/2005, em área experimental da Universidade Estadual Paulista, Campus de Jaboticabal (SP, com o objetivo de se determinarem os períodos de interferência das plantas daninhas na cultura do arroz de terras altas, cultivar Caiapó. O delineamento experimental foi em blocos ao acaso com quatro repetições e 16 tratamentos. Os tratamentos foram constituídos por períodos crescentes de controle ou de convivência das plantas daninhas após a emergência da cultura: 0-10, 0-20, 0-30, 0-40, 0-50, 0-60, 0-70 dias e 0-colheita. Nos dois anos, as famílias predominantes eram Poaceae, Asteraceae, Amaranthaceae e Malvaceae e as principais plantas daninhas presentes foram: Cyperus rotundus L., Cenchrus echinatus L., Digitaria spp Heist., Echinochloa crus-galli (L. P. Beauv., Brachiaria decumbens Stapf., Eleusine indica Gaertn e Alternanthera tenella Colla. A cultivar de arroz de terras altas Caiapó deve ser mantida sem plantas daninhas nos 30 dias após a emergência.The experiments were carried out in two growing seasons (2003/04 and 2004/05 in an experimental area at São Paulo State University - UNESP, Jaboticabal Campus, to evaluate the weed interference periods on the upland Caiapó rice variety. The experimental design was randomized blocks with 4 replicates and 16 treatments. The treatments consisted of increasing periods of control or coexistence after emergence of the culture: 0-10; 0-20; 0-30; 0-40; 0-50; 0-60; 0-70 days; 0-harvest. The predominant families were Poaceae, Asteraceae, Amaranthaceae and Malvaceae, and the main weeds present were Cyperus rotundus L., Cenchrus echinatus L., Digitaria spp Heist., Echinochloa crus-galli (L. P. Beauv., Brachiaria decumbens Stapf., Eleusine indica Gaertn e Alternanthera tenella Colla for both years. The upland rice cultivar Caiapó is to be kept free of weeds for 30 days after emergence.

  20. Genetic and biochemical basis of Gall Midge resistance in some cultivars of Indica Rice. Final report for the period 1 October 1980 - 30 November 1986

    International Nuclear Information System (INIS)

    Reddy, G.M.

    1986-01-01

    The stability of high productivity of modern rice varieties is greatly affected by insect pests. Rice gall midge is a serious insect pest of rice that is prevalent in several south eastern asian countries. Gall midge resistance has been mainly attributed to antibiosis. No progress has so far been made in identifying the exact biochemical nature of resistance. In Indica subspecies the understanding of chemical nature of disease would be helpful in the control of the disease and also in breeding programme aimed at developing resistance varieties. Studies were undertaken to establish the biochemical basis of resistance. Biochemical characterization of resistant and susceptible varieties were carried out. The parameters considered were: total sugar and reducing sugar content, total phenol content, amino acid profile, post infectional changes in sugar and phenol, isozyme studies. 2 figs, 6 tabs

  1. Genetic and biochemical basis of Gall Midge resistance in some cultivars of Indica Rice. Final report for the period 1 October 1980 - 30 November 1986

    Energy Technology Data Exchange (ETDEWEB)

    Reddy, G M [Osmania Univ., Hyderabad (India). Dept. of Genetics

    1987-12-31

    The stability of high productivity of modern rice varieties is greatly affected by insect pests. Rice gall midge is a serious insect pest of rice that is prevalent in several south eastern asian countries. Gall midge resistance has been mainly attributed to antibiosis. No progress has so far been made in identifying the exact biochemical nature of resistance. In Indica subspecies the understanding of chemical nature of disease would be helpful in the control of the disease and also in breeding programme aimed at developing resistance varieties. Studies were undertaken to establish the biochemical basis of resistance. Biochemical characterization of resistant and susceptible varieties were carried out. The parameters considered were: total sugar and reducing sugar content, total phenol content, amino acid profile, post infectional changes in sugar and phenol, isozyme studies. 2 figs, 6 tabs.

  2. Investigation of Polymorphisms in Coding Region of OsHKT1 in Relation to Salinity in Rice

    Directory of Open Access Journals (Sweden)

    Pham Quynh-Hoa

    2016-11-01

    Full Text Available Rice (Oryza sativa is sensitive to salinity, but the salt tolerance level differs among cultivars, which might result from natural variations in the genes that are responsible for salt tolerance. High-affinity potassium transporter (HKTs has been proven to be involved in salt tolerance in plants. Therefore, we screened for natural nucleotide polymorphism in the coding sequence of OsHKT1, which encodes the HKT protein in eight Vietnamese rice cultivars differing in salt tolerance level. In total, seven nucleotide substitutions in coding sequence of OsHKT1 were found, including two non-synonymous and five synonymous substitutions. Further analysis revealed that these two non-synonymous nucleotide substitutions (G50T and T1209A caused changes in amino acids (Gly17Val and Asp403Glu at signal peptide and the loop of the sixth transmembrane domain, respectively. To assess the potential effect of these substitutions on the protein function, the 3D structure of HKT protein variants was modelled by using PHYRE2 webserver. The results showed that no difference was observed when compared those predicted 3D structure of HKT protein variants with each other. In addition, the codon bias of synonymous substitutions cannot clearly show correlation with salt tolerance level. It might be interesting to further investigate the functional roles of detected non-synonymous substitutions as it might correlate to salt tolerance in rice.

  3. The Evolution of Scientific Trajectories in Rice: Mapping the Relation between Research and Societal Priorities

    Energy Technology Data Exchange (ETDEWEB)

    Ciarli, T.; Rafols, I.

    2016-07-01

    How do specific technologies emerge? How is the scientific research related to technologies prioritised, in governments, firms, universities, and other actors involved in research? Related to these questions is the question of how we investigate trajectories of science and technologies, and how to model their relation. In this paper we aim to answer the initial question for a case study, rice, proposing to use new data, methods, and indicators. We discuss a number of insights on the evolution of the research trajectory on rice since the 1980’s, worldwide and for a number of countries which dominate the world rankings in rice production and/or in rice publications. Using a number of socio-economic indicators at the country level, we relate priorities on the research side (publication topics) and on the societal side finding limited relations between supply and demand of research. In the paper we also discuss the combination of scientometric and socio-economic indicators, suggesting that they may be useful for future research on the relation between societal needs and research priorities. (Author)

  4. Field experiment for determining lead accumulation in rice grains of different genotypes and correlation with iron oxides deposited on rhizosphere soil.

    Science.gov (United States)

    Lai, Yu-Cheng; Syu, Chien-Hui; Wang, Pin-Jie; Lee, Dar-Yuan; Fan, Chihhao; Juang, Kai-Wei

    2018-01-01

    Paddy rice (Oryza sativa L.) is a major staple crop in Asia. However, heavy metal accumulation in paddy soil poses a health risk for rice consumption. Although plant uptake of Pb is usually low, Pb concentrations in rice plants have been increasing with Pb contamination in paddy fields. It is known that iron oxide deposits in the rhizosphere influence the absorption of soil Pb by rice plants. In this study, 14 rice cultivars bred in Taiwan, including ten japonica cultivars (HL21, KH145, TC192, TK9, TK14, TK16, TN11, TNG71, TNG84, and TY3) and four indica cultivars (TCS10, TCS17, TCSW2, and TNGS22), were used in a field experiment. We investigated the genotypic variation in rice plant Pb in relation to iron oxides deposited in the rhizosphere, as seen in a suspiciously contaminated site in central Taiwan. The results showed that the cultivars TCSW2, TN11, TNG71, and TNG84 accumulated brown rice Pb exceeding the tolerable level of 0.2mgkg -1 . In contrast, the cultivars TNGS22, TK9, TK14, and TY3 accumulated much lower brown rice Pb (iron oxides deposited on the rhizosphere soil show stronger affinity to soil-available Pb than those on the root surface to form iron plaque. The relative tendency of Pb sequestration toward rhizosphere soil was negatively correlated with the Pb concentrations in brown rice. The iron oxides deposited on the rhizosphere soil but not on the root surface to form iron plaque dominate Pb sequestration in the rhizosphere. Therefore, the enhancement of iron oxide deposits on the rhizosphere soil could serve as a barrier preventing soil Pb on the root surface and result in reduced Pb accumulation in brown rice. Copyright © 2017 Elsevier B.V. All rights reserved.

  5. Molecular phylogenomic study and the role of exogenous spermidine in the metabolic adjustment of endogenous polyamine in two rice cultivars under salt stress.

    Science.gov (United States)

    Saha, Jayita; Giri, Kalyan

    2017-04-20

    Compelling evidences anticipated the well acclamation of involvement of exogenous and endogenous polyamines (PAs) in conferring salt tolerance in plants. Intracellular PA's anabolism and catabolism should have contributed to maintain endogenous PAs homeostasis to induce stress signal networks. In this report, the evolutionary study has been conducted to reveal the phylogenetic relationship of genes encoding enzymes of the anabolic and catabolic pathway of PAs among the five plant lineages including green algae, moss, lycophyte, dicot and monocot along with their respective exon-intron structural patterns. Our results indicated that natural selection pressure had considerable influence on the ancestral PA metabolic pathway coding genes of land plants. PA metabolic genes have undergone gradual evolution by duplication and diversification process leading to subsequent structural modification through exon-intron gain and loss events to acquire specific function under environmental stress conditions. We have illuminated on the potential regulation of both the pathways by investigating the real-time expression analyses of PA metabolic pathway related enzyme coding genes at the transcriptional level in root and shoot tissues of two indica rice varieties, namely IR 36 (salt sensitive) and Nonabokra (salt-tolerant) in response to salinity in presence or absence of exogenous spermidine (Spd) treatment. Additionally, we have performed tissue specific quantification of the intracellular PAs and tried to draw probable connection between the PA metabolic pathway activation and endogenous PAs accumulation. Our results successfully enlighten the fact that how exogenous Spd in presence or absence of salt stress adjust the intracellular PA pathways to equilibrate the cellular PAs that would have been attributed to plant salt tolerance. Copyright © 2017 Elsevier B.V. All rights reserved.

  6. Ozone Effects on Fruit Productivity and Photosynthetic Response of Two Tomato Cultivars in Relation to Stomatal Fluxes

    Directory of Open Access Journals (Sweden)

    Giacomo Gerosa

    Full Text Available An Open-Top Chamber experiment on two tomato cultivars (cv. Oxheart and cv. San Marzano was carried out in Curno (Northern Italy between June and September 2007. Two ozone treatments were applied for a 3.5 months period: Non-Filtered OTC (NF-OTC, 95% of ambient ozone and Charcoal-Filtered OTC (CF-OTC, 50% of ambient ozone. Diurnal cycles of porometry measurements were performed during the season and allowed to draw a stomatal conductance model for each cultivar in order to calculate the ozone stomatal fluxes taken up by plants. Assessments on fruits yield were performed during the season, taking into account the number of fruits, their fresh weight and their marketability. In addition, measurements on the chlorophyll fluorescence of photosystems were carried out to assess possible negative effects on photosynthetic efficiency. Despite the two cultivars absorbed a similar ozone stomatal dose during the season (with an 8% difference, their responses to ozone treatments were totally divergent in relation to both fruits yield and photosynthetic efficiency. Plants of cv. Oxheart grown in NF-OTCs showed significant yield loss in the total weight of fruits (-35.9% which is exclusively related to a decrease in the number of fruits produced (-35.7% of total fruits; -30.6% of marketable fruits, since mean fresh weight of fruits remained unaffected. Moreover the same plants displayed low values (in comparison to CF-OTCs plants of the photosynthetic efficiency index (PIabs during the most intense period of ozone stress (July occurred in the flowering stage of plants and at the beginning of fructification. Plants of the cv. San Marzano had an opposite response behaviour with an increase of the mean fresh weight of fruits in plants grown in NF-OTC (even if not statistically significant and no difference in the number of fruits produced and in the values of photosynthetic efficiency.

  7. Evaluation of Rice Resistance to Southern Rice Black-Streaked Dwarf Virus and Rice Ragged Stunt Virus through Combined Field Tests, Quantitative Real-Time PCR, and Proteome Analysis.

    Science.gov (United States)

    Wang, Zhenchao; Yu, Lu; Jin, Linhong; Wang, Wenli; Zhao, Qi; Ran, Longlu; Li, Xiangyang; Chen, Zhuo; Guo, Rong; Wei, Yongtian; Yang, Zhongcheng; Liu, Enlong; Hu, Deyu; Song, Baoan

    2017-02-22

    Diseases caused by southern rice black-streaked dwarf virus (SRBSDV) and rice ragged stunt virus (RRSV) considerably decrease grain yield. Therefore, determining rice cultivars with high resistance to SRBSDV and RRSV is necessary. In this study, rice cultivars with high resistance to SRBSDV and RRSV were evaluated through field trials in Shidian and Mangshi county, Yunnan province, China. SYBR Green I-based quantitative real-time polymerase chain reaction (qRT-PCR) analysis was used to quantitatively detect virus gene expression levels in different rice varieties. The following parameters were applied to evaluate rice resistance: acre yield (A.Y.), incidence of infected plants (I.I.P.), virus load (V.L.), disease index (D.I.), and insect quantity (I.Q.) per 100 clusters. Zhongzheyou1 (Z1) and Liangyou2186 (L2186) were considered the most suitable varieties with integrated higher A.Y., lower I.I.P., V.L., D.I. and I.Q. In order to investigate the mechanism of rice resistance, comparative label-free shotgun liquid chromatography tandem-mass spectrometry (LC-MS/MS) proteomic approaches were applied to comprehensively describe the proteomics of rice varieties' SRBSDV tolerance. Systemic acquired resistance (SAR)-related proteins in Z1 and L2186 may result in the superior resistance of these varieties compared with Fengyouxiangzhan (FYXZ).

  8. Starch Hydrolysis and Vessel Occlusion Related to Wilt Symptoms in Olive Stems of Susceptible Cultivars Infected by Verticillium dahliae

    Science.gov (United States)

    Trapero, Carlos; Alcántara, Esteban; Jiménez, Jaime; Amaro-Ventura, María C.; Romero, Joaquín; Koopmann, Birger; Karlovsky, Petr; von Tiedemann, Andreas; Pérez-Rodríguez, Mario; López-Escudero, Francisco J.

    2018-01-01

    This study investigated starch content, amount of pathogen DNA and density of occluded vessels in healthy and Verticillium dahliae infected olive shoots and stems. Starch hydrolysis is considered a mechanism to refill xylem vessels that suffered cavitation by either, drought conditions or pathogen infections. The main objective of this work was to evaluate this mechanism in olive plants subjected to V. dahliae infection or to drought conditions, in order to know the importance of cavitation in the development of wilting symptoms. In initial experiments starch content in the shoots was studied in trees of cultivars differing in the level of resistance growing in fields naturally infested with V. dahliae. The starch content, esteemed by microscopic observation of stem transversal sections stained with lugol, decreased with the level of symptom severity. Results were confirmed in a new experiment developed with young plants of cultivars ‘Picual’ (highly susceptible), ‘Arbequina’ (moderately susceptible) and ‘Frantoio’ (resistant), growing in pots under greenhouse conditions, either inoculated or not with V. dahliae. In this experiment, the pathogen DNA content, quantified by real-time PCR, and the density of occluded vessels, recorded by microscopic observations of transversal sections stained with toluidine blue, were related to the symptoms severity caused by the pathogen. Finally, a drought experiment was established with young plants of the cultivar ‘Picual’ grown in pots under greenhouse conditions in order to compare the effects caused by water deficit with those caused by the pathogen infection. In both cases, results show that starch hydrolysis occurred, what indirectly evidence the importance of xylem cavitation in the development of the symptoms caused by V. dahliae but in the water stressed plants no vessel occlusion was detected. PMID:29445388

  9. Starch Hydrolysis and Vessel Occlusion Related to Wilt Symptoms in Olive Stems of Susceptible Cultivars Infected by Verticillium dahliae

    Directory of Open Access Journals (Sweden)

    Carlos Trapero

    2018-01-01

    Full Text Available This study investigated starch content, amount of pathogen DNA and density of occluded vessels in healthy and Verticillium dahliae infected olive shoots and stems. Starch hydrolysis is considered a mechanism to refill xylem vessels that suffered cavitation by either, drought conditions or pathogen infections. The main objective of this work was to evaluate this mechanism in olive plants subjected to V. dahliae infection or to drought conditions, in order to know the importance of cavitation in the development of wilting symptoms. In initial experiments starch content in the shoots was studied in trees of cultivars differing in the level of resistance growing in fields naturally infested with V. dahliae. The starch content, esteemed by microscopic observation of stem transversal sections stained with lugol, decreased with the level of symptom severity. Results were confirmed in a new experiment developed with young plants of cultivars ‘Picual’ (highly susceptible, ‘Arbequina’ (moderately susceptible and ‘Frantoio’ (resistant, growing in pots under greenhouse conditions, either inoculated or not with V. dahliae. In this experiment, the pathogen DNA content, quantified by real-time PCR, and the density of occluded vessels, recorded by microscopic observations of transversal sections stained with toluidine blue, were related to the symptoms severity caused by the pathogen. Finally, a drought experiment was established with young plants of the cultivar ‘Picual’ grown in pots under greenhouse conditions in order to compare the effects caused by water deficit with those caused by the pathogen infection. In both cases, results show that starch hydrolysis occurred, what indirectly evidence the importance of xylem cavitation in the development of the symptoms caused by V. dahliae but in the water stressed plants no vessel occlusion was detected.

  10. Lead (Pb) Toxicity; Physio-Biochemical Mechanisms, Grain Yield, Quality, and Pb Distribution Proportions in Scented Rice.

    Science.gov (United States)

    Ashraf, Umair; Kanu, Adam S; Deng, Quanquan; Mo, Zhaowen; Pan, Shenggang; Tian, Hua; Tang, Xiangru

    2017-01-01

    Lead (Pb) caused interruptions with normal plant metabolism, crop yield losses and quality issues are of great concern. This study assessed the physio-biochemical responses, yield and grain quality traits and Pb distribution proportions in three different fragrant rice cultivars i.e., Meixiangzhan-2, Xinagyaxiangzhan and Basmati-385. Plants were exposed to 400, 800, and 1,200 ppm of Pb while pots without Pb were taken as control (0 ppm). Our results showed that Pb toxicity significantly ( P production of hydrogen peroxide (H 2 O 2 ), malanodialdehyde (MDA) and leaves leachates; while such effects were more apparent in Xinagyaxiangzhan than other two rice cultivars. Pb stress differentially affected the production protein, proline and soluble sugars; however the production rates were higher at heading stage (HS) than maturity stage (MS). Furthermore, Pb stress altered superoxide dismutase (SOD), peroxidases (POD), catalases (CAT) and ascorbate peroxidases (APX) activities and glutathione (GSH) and oxidized glutathione (GSSG) production in all rice cultivars at both HS and MS. All Pb levels reduced the yield and yield components of all rice cultivars; nonetheless such reductions were observed highest in Xinagyaxiangzhan (69.12%) than Meixiangzhan-2 (58.05%) and Basmati-385 (46.27%) and resulted in grain quality deterioration. Significant and positive correlations among rice yields with productive tillers/pot and grains per panicle while negative with sterility percentage were also observed. In addition, all rice cultivars readily taken up the Pb contents from soil to roots and transported upward in different proportions with maximum in roots followed by stemss, leaves, ears and grains. Higher proportions of Pb contents in above ground plant parts in Xinagyaxiangzhan possibly lead to maximum losses in this cultivar than other two cultivars; while less damage in Basmati-385 might be related to strong anti-oxidative defense system and lower proportions of Pb contents in

  11. Adição de molibdênio ao inoculante turfoso com bactérias diazotróficas usado em duas cultivares de arroz irrigado Addition of molybdenum in peat innoculum with diazotrophic bacteria used in two rice cultivars

    Directory of Open Access Journals (Sweden)

    Salomão Lima Guimarães

    2007-03-01

    Full Text Available O objetivo deste trabalho foi avaliar o efeito da utilização de bactérias diazotróficas com ou sem molibdênio em duas cultivares de arroz com diferentes potenciais de fixação biológica de nitrogênio. Dois experimentos foram montados: o primeiro foi conduzido em condições gnotobióticas, com utilização das estirpes BR 11417 (ZAE94 - Herbaspirillum seropedicae e BR 11340 (M130 - Burkholderia sp., duas doses de molibdênio, 1,12 e 2,25 g, e duas fontes, molibdato de sódio e molibdato de amônio. As sementes foram peletizadas com inoculante turfoso com bactérias diazotróficas e o molibdênio. Em seguida as cultivares foram plantadas em tubos de ensaio com capacidade para 120 mL com 60 mL da solução de Hoagland sem nitrogênio por 30 dias. Foi avaliada a matéria seca das plantas. O segundo experimento foi conduzido em vasos em casa de vegetação, com as mesmas estirpes e dosagens de molibdênio. Foram avaliados a produção e o N total dos grãos. O delineamento estatístico foi inteiramente casualizado com quatro repetições e quatro plantas por vaso. Foram observados aumentos na produção de grãos nas cultivares IR42 e IAC4440 de 88 e 57%, respectivamente, com a adição ao inoculante turfoso, das estirpes ZAE94 e M130 com molibdênio.The objective of this work was to evaluate the effect of the inoculation of diazotrophic bacteria associated with the molybdenum in two rice cultivars. Two experiments were performed: the first one was lead under gnotobiotics conditions, using Herbaspirillum seropedicae, strain BR 11417 and Burkholderia sp., strain BR 11340, two doses of molybdenum (1.12 and 2.25 g and two different sources of Mo - sodium molybdate and ammonium molybdate. The seeds were pelleted with peat containing diazotrophic bacteria and molybdenum. After inoculations were seeds planted in to test tubes with capacity for 120 mL content 60 mL Hoagland solution without nitrogen. Seedlings were harvested after 30 days and plant

  12. (Lilium) cultivar

    African Journals Online (AJOL)

    Yomi

    2012-08-30

    Aug 30, 2012 ... 2National Engineering Research Center for Floriculture, Beijing, China. Accepted 6 August, 2012 ... hybrids lily cultivar 'eyeliner' was selected as the materials. By using the ... of sterilization was not ideal which led to higher.

  13. Could abiotic stress tolerance in wild relatives of rice be used to improve Oryza sativa?

    Science.gov (United States)

    Atwell, Brian J; Wang, Han; Scafaro, Andrew P

    2014-02-01

    Oryza sativa and Oryza glaberrima have been selected to acquire and partition resources efficiently as part of the process of domestication. However, genetic diversity in cultivated rice is limited compared to wild Oryza species, in spite of 120,000 genotypes being held in gene banks. By contrast, there is untapped diversity in the more than 20 wild species of Oryza, some having been collected from just a few coastal locations (e.g. Oryza schlechteri), while others are widely distributed (e.g. Oryza nivara and Oryza rufipogon). The extent of DNA sequence diversity and phenotypic variation is still being established in wild Oryza, with genetic barriers suggesting a vast range of morphologies and function even within species, such as has been demonstrated for Oryza meridionalis. With increasing climate variability and attempts to make more marginal land arable, abiotic and biotic stresses will be managed over the coming decades by tapping into the genetic diversity of wild relatives of O. sativa. To help create a more targeted approach to sourcing wild rice germplasm for abiotic stress tolerance, we have created a climate distribution map by plotting the natural occurrence of all Oryza species against corresponding temperature and moisture data. We then discuss interspecific variation in phenotype and its significance for rice, followed by a discussion of ways to integrate germplasm from wild relatives into domesticated rice. Crown Copyright © 2013. Published by Elsevier Ireland Ltd. All rights reserved.

  14. The enhancement by arbuscular mycorrhizal fungi of the Cd remediation ability and bioenergy quality-related factors of five switchgrass cultivars in Cd-contaminated soil

    Directory of Open Access Journals (Sweden)

    Hong Sun

    2018-03-01

    Full Text Available A greenhouse experiment was carried out to investigate the effects of arbuscular mycorrhizal fungi (AMF on the growth, P and Cd concentrations and bioenergy quality-related factors of five cultivars of switchgrass, including three lowland cultivars (Alamo (Ala, Kanlow (Kan, Performer (Per and two highland cultivars (Blackwell (Bw, Summer (Sum, with 0, 1 and 10 mg/kg Cd addition levels. The results showed that AMF inoculation notably increased the biomass and P concentrations of all the cultivars. The Cd concentrations in the roots were higher than those in the shoots of all cultivars irrespective of inoculation, but the AMF had different effects on Cd accumulation in highland and lowland cultivars. AMF inoculation decreased the shoot and root concentrations in Ala and Kan, increased the shoot and root concentrations of Cd in Bw and Sum, and increased shoot Cd concentrations and decreased root Cd concentrations in Per. The highest Cd concentrations were detected in the roots of Bw and in the shoots of Sum with AMF symbiosis. Bw contained the highest total extracted Cd which was primarily in the roots. Ala had the second highest extracted Cd in the shoots, reaching 32% with 1 mg/kg of added Cd, whereas Sum had the lowest extracted Cd. AMF symbiosis had varied effects on bioenergy quality-related factors: for example, AMF decreased the ash lignin content in Ala and the C/N in Sum, increased the nitrogen, gross calorie values, and maintained the hemicellulose and cellulose contents in all cultivars with all tested concentrations of Cd. A principal component analysis (PCA showed that AMF inoculation could enhance, weaken or transform (positive-negative, PC1-PC2 the correlations of these factors with the principle components under Cd stress. Therefore, AMF symbiosis enhanced the growth of different cultivars of switchgrass, increased/decreased Cd accumulation, promoted Cd extraction, and regulated the bioenergy quality-related factors in Cd

  15. Study on homologous series of induced early mutants in Indica rice Ⅱ. the relationship between the homologous series of early mutants induced and the ecotype in Indica rice

    International Nuclear Information System (INIS)

    Chen Xiulan; Yang Hefeng; He Zhentian; Han Yuepeng; Liu Xueyu

    2001-01-01

    The induced mutation in light sensitivity of the Indica rice leads to induction of the homologous series of early mutants along with the variation of ecological character and the ecoclimate. The induction of mutants was closely related to the ecotype of Indica rice, the homologous series of early mutants in different level were derived from the different ecotype of the Indica rice, otherwise, the similar homologous series of early mutants were derived from the same ecotypic variety. The induction of the early ecotypic variety derived from the homologous series of early mutants provides the basis and possibility for accelerating the development of the new cultivars. (authors)

  16. Phenolic composition and free radical scavenging activity of different apple varieties in relation to the cultivar, tissue type and storage.

    Science.gov (United States)

    Carbone, K; Giannini, B; Picchi, V; Lo Scalzo, R; Cecchini, F

    2011-07-15

    The aim of this research was to evaluate the influence of genotype, tissue type and cold storage on the bioactive compounds content and on the antiradical activity (AA) of different apple cultivars (Golden cl. B, Fuji cl. Kiku8, Braeburn cl. Hillwell). The content of analysed phyto-compounds depended on the clone, on the part of fruit, and to a minor extent, on the storage. For EC(50) data, the cultivar represented the main source of variation and the interaction with the type of tissue, was significant. The AA of apples, measured by means of the DPPH test, was highly correlated to the flavan-3-ols content, which represents a good predictor of the apple antiradical power. The new Braeburn's clone, the Hillwell, had the worst AA related to a minor phyto-chemical content. Also, its phenolic content was dramatically reduced after cold storage (flesh: -50%; peels: -20%; papples, which is important to improve their quality and consumption benefits, suggesting to the breeders to pay more attention to the potential healthy compounds in the development of new hybrids. Copyright © 2011 Elsevier Ltd. All rights reserved.

  17. Quantitative proteomic analysis of CMS-related changes in Honglian CMS rice anther.

    Science.gov (United States)

    Sun, Qingping; Hu, Chaofeng; Hu, Jun; Li, Shaoqing; Zhu, Yingguo

    2009-10-01

    Honglian (HL) cytoplasmic male sterility (CMS) is one of the rice CMS types and has been widely used in hybrid rice production in China. The CMS line (Yuetai A, YTA) has a Yuetai B (maintainer line, YTB) nuclear genome, but has a rearranged mitochondrial (mt) genome consisting of Yuetai B. The fertility of hybrid (HL-6) was restored by restorer gene in nuclear genome of restorer line (9311). We used isotope-code affinity tag (ICAT) technology to perform the protein profiling of uninucleate stage rice anther and identify the CMS-HL related proteins. Two separate ICAT analyses were performed in this study: (1) anthers from YTA versus anthers from YTB, and (2) anthers from YTA versus anthers from HL-6. Based on the two analyses, a total of 97 unique proteins were identified and quantified in uninucleate stage rice anther under the error rate of less than 10%, of which eight proteins showed abundance changes of at least twofold between YTA and YTB. Triosephosphate isomerase, fructokinase II, DNA-binding protein GBP16 and ribosomal protein L3B were over-expressed in YTB, while oligopeptide transporter, floral organ regulator 1, kinase and S-adenosyl-L: -methionine synthetase were over-expressed in YTA. Reduction of the proteins associated with energy production and lesser ATP equivalents detected in CMS anther indicated that the low level of energy production played an important role in inducing CMS-HL.

  18. Assessment of genetic variability in rice (oryza sativa l.) germplasm from Pakistan using rapd markers

    International Nuclear Information System (INIS)

    Pervaiz, Z.H.; Rabbani, M.A.; Shinwar, Z.K.; Masood, M.S.; Malik, S.A.

    2010-01-01

    Information on genetic diversity and relationships among rice genotypes from Pakistan is currently very limited. Molecular marker analysis can truly be beneficial in analyzing the diversity of rice germplasm providing useful information to broaden the genetic base of modern rice cultivars. The objective of this study was to evaluate the genetic polymorphism of 75 rice accessions and improved cultivars using random amplified polymorphic DNA (RAPD) technique. Twenty-eight decamer-primers generated a total of 145 RAPD fragments, of which 116 (80%) were polymorphic. The number of amplification products produced by each primer varied from 3 to 9 with an average of 5.2 alleles primer-1. The size of amplified fragments ranged from 250 to 4000bp. A dendrogram was generated from minimal variance algorithm using Ward method. All the 75 genotypes were grouped into two main groups corresponding to aromatic and non-aromatic types of indica rice. Clustering of accessions did not show any significant pattern of association between the RAPD fingerprints and collection sites. This type of analysis grouping different rice accessions in relation to fragrance, a major rice quality determinant, and varietal group is extremely useful to develop a core collection and gene bank management. Further more, the information revealed by the RAPDs regarding genetic variation is helpful to the plant breeder in selecting diverse parents and for future orientation of rice breeding program. (author)

  19. Does African catfish ( Clarias gariepinus ) affect rice in integrated ...

    African Journals Online (AJOL)

    An experiment was conducted for 98 days in the Lake Victoria Basin to investigate the interactions of fish and rice growth performance in rice paddies. The experiment was laid out in a split-plot design, with rice cultivar as the main plot and method of rice-fish culture as the sub-plot. Treatments consisted of two levels of ...

  20. Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice

    Directory of Open Access Journals (Sweden)

    Jingni Wu

    2016-12-01

    Full Text Available Pathogenesis-related proteins play multiple roles in plant development and biotic and abiotic stress tolerance. Here, we characterize a rice defense related gene named “jasmonic acid inducible pathogenesis-related class 10” (JIOsPR10 to gain an insight into its functional properties. Semi-quantitative RT-PCR analysis showed up-regulation of JIOsPR10 under salt and drought stress conditions. Constitutive over-expression JIOsPR10 in rice promoted shoot and root development in transgenic plants, however, their productivity was unaltered. Further experiments exhibited that the transgenic plants showed reduced susceptibility to rice blast fungus, and enhanced salt and drought stress tolerance as compared to the wild type. A comparative proteomic profiling of wild type and transgenic plants showed that overexpression of JIOsPR10 led to the differential modulation of several proteins mainly related with oxidative stresses, carbohydrate metabolism, and plant defense. Taken together, our findings suggest that JIOsPR10 plays important roles in biotic and abiotic stresses tolerance probably by activation of stress related proteins.

  1. Aluminium tolerance in rice is antagonistic with nitrate preference and synergistic with ammonium preference.

    Science.gov (United States)

    Zhao, Xue Qiang; Guo, Shi Wei; Shinmachi, Fumie; Sunairi, Michio; Noguchi, Akira; Hasegawa, Isao; Shen, Ren Fang

    2013-01-01

    Acidic soils are dominated chemically by more ammonium and more available, so more potentially toxic, aluminium compared with neutral to calcareous soils, which are characterized by more nitrate and less available, so less toxic, aluminium. However, it is not known whether aluminium tolerance and nitrogen source preference are linked in plants. This question was investigated by comparing the responses of 30 rice (Oryza sativa) varieties (15 subsp. japonica cultivars and 15 subsp. indica cultivars) to aluminium, various ammonium/nitrate ratios and their combinations under acidic solution conditions. indica rice plants were generally found to be aluminium-sensitive and nitrate-preferring, while japonica cultivars were aluminium-tolerant and relatively ammonium-preferring. Aluminium tolerance of different rice varieties was significantly negatively correlated with their nitrate preference. Furthermore, aluminium enhanced ammonium-fed rice growth but inhibited nitrate-fed rice growth. The results suggest that aluminium tolerance in rice is antagonistic with nitrate preference and synergistic with ammonium preference under acidic solution conditions. A schematic diagram summarizing the interactions of aluminium and nitrogen in soil-plant ecosystems is presented and provides a new basis for the integrated management of acidic soils.

  2. Effect of temperature and time immersion of stage soaking on color grains of upland rice parboiled cultivars/ Efeito da temperatura e do tempo de imersão da etapa de encharcamento sobre a cor dos grãos de arroz parboilizado de cultivares de terras altas

    Directory of Open Access Journals (Sweden)

    Priscila Zaczuk Bassinelo

    Full Text Available The parboiling is the hydrothermal treatment of paddy before processing. The objective of this study was to evaluate the influence of the temperature and immersion time step of soaking (independent variables on the color of the grain parboiled (dependent variable cultivars of upland rice (BRS Primavera and BRS Sertaneja. A central composite rotational design (DCCR was used, which includes a 22 full factorial, three replicates at the center point and four axial points, making eleven treatments. It was considered for the selection of hydrothermal conditions to be studied, the criterion of water absorption in the age group from 28% - 32%. In extreme conditions of soaking (high temperature and immersion time was observed in general that the grains of parboiled rice had higher color difference for the samples of grains of white rice. Therefore, the use of temperatures below 65 °C during the soaking tend to have grains with milder browning. After parboiling under different conditions of temperature and time of soaking, the change of color (?E* was greater in cv. BRS Sertaneja. It is possible to produce grains with different shades, depending on the conditions used. The choice will depend on the application that is intended or products in wich the rice will be employed.A parboilização consiste no tratamento hidrotérmico do arroz em casca antes do beneficiamento. O objetivo deste estudo foi avaliar a influência das variáveis temperatura e tempo de imersão da etapa de encharcamento sobre a cor dos grãos parboilizados de cultivares de arroz de terras altas (BRS Primavera e BRS Sertaneja. Utilizou-se um delineamento composto central rotacional (DCCR, que inclui um fatorial completo 22, mais três repetições no ponto central e quatro pontos axiais, totalizando onze tratamentos. Considerou-se para seleção das condições hidrotérmicas, o critério de absorção de água na faixa de 28% – 32%. Nas condições extremas do encharcamento (elevada

  3. Manganese-induced regulations in growth, yield formation, quality characters, rice aroma and enzyme involved in 2-acetyl-1-pyrroline biosynthesis in fragrant rice.

    Science.gov (United States)

    Li, Meijuan; Ashraf, Umair; Tian, Hua; Mo, Zhaowen; Pan, Shenggang; Anjum, Shakeel Ahmad; Duan, Meiyang; Tang, Xiangru

    2016-06-01

    Micro-nutrient application is essential for normal plant growth while a little is known about manganese (Mn)-induced regulations in morpho-physiological attributes, aroma formation and enzyme involved in 2-acetyl-1-pyrroline (2-AP) biosynthesis in aromatic rice. Present study aimed to examine the influence of four levels of Mn i.e., Mn1 (100 mg MnSO4 pot(-1)), Mn2 (150 mg MnSO4 pot(-1)), Mn3 (200 mg MnSO4 pot(-1)), and Mn4 (250 mg MnSO4 pot(-1)) on the growth, yield formation, quality characters, rice aroma and enzyme involved in 2-acetyl-1-pyrroline biosynthesis in two fragrant rice cultivars i.e., Meixiangzhan and Nongxiang 18. Pots without Mn application were served as control (Ck). Each pot contained 15 kg of soil. Effects on agronomic characters, quality attributes, 2-AP contents and enzymes involved in 2-AP biosynthesis have been studied in early and late season rice. Results depicted that Mn improved rice growth, yield and related characters, and some quality attributes significantly. It further up-regulated proline, pyrroline-5-carboxylic acid (P5C) (precursors of 2-AP), soluble proteins and activities of proline dehydrogenase (ProDH), Δ(1) pyrroline-5-carboxylic acid synthetase (P5CS) ornithine aminotransferase (OAT) that led to enhanced 2-AP production in rice grains. Moreover, higher Mn levels resulted in increased grain Mn contents in both rice cultivars. Along with growth and yield improvement, Mn application significantly improved rice aromatic contents. Overall, Nongxiang 18 accumulated more 2-AP contents than Meixiangzhan in both seasons under Mn application. This study further explored the importance of Mn in rice aroma formation and signifies that micro-nutrients can play significant roles in rice aroma synthesis; however, intensive studies at molecular levels are still needed to understand the exact mechanisms of Mn to improve rice aroma formation. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

  4. Modeling the leaf angle dynamics in rice plant.

    Directory of Open Access Journals (Sweden)

    Yonghui Zhang

    Full Text Available The leaf angle between stem and sheath (SSA is an important rice morphological trait. The objective of this study was to develop and validate a dynamic SSA model under different nitrogen (N rates for selected rice cultivars. The time-course data of SSA were collected in three years, and a dynamic SSA model was developed for different main stem leaf ranks under different N rates for two selected rice cultivars. SSA increased with tiller age. The SSA of the same leaf rank increased with increase in N rate. The maximum SSA increased with leaf rank from the first to the third leaf, then decreased from the third to the final leaf. The relationship between the maximum SSA and leaf rank on main stem could be described with a linear piecewise function. The change of SSA with thermal time (TT was described by a logistic equation. A variety parameter (the maximum SSA of the 3rd leaf on main stem and a nitrogen factor were introduced to quantify the effect of cultivar and N rate on SSA. The model was validated against data collected from both pot and field experiments. The relative root mean square error (RRMSE was 11.56% and 14.05%, respectively. The resulting models could be used for virtual rice plant modeling and plant-type design.

  5. Root morphology, hydraulic conductivity and plant water relations of high-yielding rice grown under aerobic conditions.

    Science.gov (United States)

    Kato, Yoichiro; Okami, Midori

    2011-09-01

    Increasing physical water scarcity is a major constraint for irrigated rice (Oryza sativa) production. 'Aerobic rice culture' aims to maximize yield per unit water input by growing plants in aerobic soil without flooding or puddling. The objective was to determine (a) the effect of water management on root morphology and hydraulic conductance, and (b) their roles in plant-water relationships and stomatal conductance in aerobic culture. Root system development, stomatal conductance (g(s)) and leaf water potential (Ψ(leaf)) were monitored in a high-yielding rice cultivar ('Takanari') under flooded and aerobic conditions at two soil moisture levels [nearly saturated (> -10 kPa) and mildly dry (> -30 kPa)] over 2 years. In an ancillary pot experiment, whole-plant hydraulic conductivity (soil-leaf hydraulic conductance; K(pa)) was measured under flooded and aerobic conditions. Adventitious root emergence and lateral root proliferation were restricted even under nearly saturated conditions, resulting in a 72-85 % reduction in total root length under aerobic culture conditions. Because of their reduced rooting size, plants grown under aerobic conditions tended to have lower K(pa) than plants grown under flooded conditions. Ψ(leaf) was always significantly lower in aerobic culture than in flooded culture, while g(s) was unchanged when the soil moisture was at around field capacity. g(s) was inevitably reduced when the soil water potential at 20-cm depth reached -20 kPa. Unstable performance of rice in water-saving cultivations is often associated with reduction in Ψ(leaf). Ψ(leaf) may reduce even if K(pa) is not significantly changed, but the lower Ψ(leaf) would certainly occur in case K(pa) reduces as a result of lower water-uptake capacity under aerobic conditions. Rice performance in aerobic culture might be improved through genetic manipulation that promotes lateral root branching and rhizogenesis as well as deep rooting.

  6. Rice Yellow Mottle Virus stress responsive genes from susceptible and tolerant rice genotypes

    Directory of Open Access Journals (Sweden)

    Siré Christelle

    2008-03-01

    Full Text Available Abstract Background The effects of viral infection involve concomitant plant gene variations and cellular changes. A simple system is required to assess the complexity of host responses to viral infection. The genome of the Rice yellow mottle virus (RYMV is a single-stranded RNA with a simple organisation. It is the most well-known monocotyledon virus model. Several studies on its biology, structure and phylogeography have provided a suitable background for further genetic studies. 12 rice chromosome sequences are now available and provide strong support for genomic studies, particularly physical mapping and gene identification. Results The present data, obtained through the cDNA-AFLP technique, demonstrate differential responses to RYMV of two different rice cultivars, i.e. susceptible IR64 (Oryza sativa indica, and partially resistant Azucena (O. s. japonica. This RNA profiling provides a new original dataset that will enable us to gain greater insight into the RYMV/rice interaction and the specificity of the host response. Using the SIM4 subroutine, we took the intron/exon structure of the gene into account and mapped 281 RYMV stress responsive (RSR transcripts on 12 rice chromosomes corresponding to 234 RSR genes. We also mapped previously identified deregulated proteins and genes involved in partial resistance and thus constructed the first global physical map of the RYMV/rice interaction. RSR transcripts on rice chromosomes 4 and 10 were found to be not randomly distributed. Seven genes were identified in the susceptible and partially resistant cultivars, and transcripts were colocalized for these seven genes in both cultivars. During virus infection, many concomitant plant gene expression changes may be associated with host changes caused by the infection process, general stress or defence responses. We noted that some genes (e.g. ABC transporters were regulated throughout the kinetics of infection and differentiated susceptible and

  7. Response of three broccoli cultivars to salt stress, in relation to water status and expression of two leaf aquaporins.

    Science.gov (United States)

    Muries, Beatriz; Carvajal, Micaela; Martínez-Ballesta, María Del Carmen

    2013-05-01

    The aim of this study was to compare differences in water relations in the leaves of three broccoli cultivars and differential induction of the expression of PIP2 aquaporin isoforms under salt stress. Although broccoli is known to be moderately tolerant to salinity, scarce information exists about the involvement of leaf aquaporins in its adaptation to salinity. Thus, leaf water relations, leaf cell hydraulic conductivity (Lpc), gas exchange parameters and the PIP2 expression pattern were determined for short- (15 h) and long- (15 days) term NaCl treatments. In the long term, the lower half-time of water exchange in the cells of cv. Naxos, compared with Parthenon and Chronos, and its increased PIP2 abundance may have contributed to its Lpc maintenance. This unmodified Lpc in cv. Naxos under prolonged salinity may have diluted NaCl in the leaves, as suggested by lower Na(+) concentrations in the leaf sap. By contrast, the increase in the half-time of water exchange and the lower PIP2 abundance in cvs. Chronos and Parthenon would have contributed to the reduced Lpc values. In cv. Parthenon, there were no differences between the ε values of control and salt-stressed plants; in consequence, cell turgor was enhanced. Also, the increases in BoPIP2;2 and BoPIP2;3 expression in cv. Chronos for the short-term NaCl treatment suggest that these isoforms are involved in osmotic regulation as downstream factors in this cultivar, in fact, in the short-term, Chronos had a significantly reduced osmotic potential and higher PIP2 isoforms expression.

  8. Comparing Relationships among Yield and Its Related Traits in Mycorrhizal and Nonmycorrhizal Inoculated Wheat Cultivars under Different Water Regimes Using Multivariate Statistics

    Directory of Open Access Journals (Sweden)

    Armin Saed-Moucheshi

    2013-01-01

    Full Text Available Multivariate statistical techniques were used to compare the relationship between yield and its related traits under noninoculated and inoculated cultivars with mycorrhizal fungus (Glomus intraradices; each one consisted of three wheat cultivars and four water regimes. Results showed that, under inoculation conditions, spike weight per plant and total chlorophyll content of the flag leaf were the most important variables contributing to wheat grain yield variation, while, under noninoculated condition, in addition to two mentioned traits, grain weight per spike and leaf area were also important variables accounting for wheat grain yield variation. Therefore, spike weight per plant and chlorophyll content of flag leaf can be used as selection criteria in breeding programs for both inoculated and noninoculated wheat cultivars under different water regimes, and also grain weight per spike and leaf area can be considered for noninoculated condition. Furthermore, inoculation of wheat cultivars showed higher value in the most measured traits, and the results indicated that inoculation treatment could change the relationship among morphological traits of wheat cultivars under drought stress. Also, it seems that the results of stepwise regression as a selecting method together with principal component and factor analysis are stronger methods to be applied in breeding programs for screening important traits.

  9. Broken rice kernels and the kinetics of rice hydration and texture during cooking.

    Science.gov (United States)

    Saleh, Mohammed; Meullenet, Jean-Francois

    2013-05-01

    During rice milling and processing, broken kernels are inevitably present, although to date it has been unclear as to how the presence of broken kernels affects rice hydration and cooked rice texture. Therefore, this work intended to study the effect of broken kernels in a rice sample on rice hydration and texture during cooking. Two medium-grain and two long-grain rice cultivars were harvested, dried and milled, and the broken kernels were separated from unbroken kernels. Broken rice kernels were subsequently combined with unbroken rice kernels forming treatments of 0, 40, 150, 350 or 1000 g kg(-1) broken kernels ratio. Rice samples were then cooked and the moisture content of the cooked rice, the moisture uptake rate, and rice hardness and stickiness were measured. As the amount of broken rice kernels increased, rice sample texture became increasingly softer (P hardness was negatively correlated to the percentage of broken kernels in rice samples. Differences in the proportions of broken rice in a milled rice sample play a major role in determining the texture properties of cooked rice. Variations in the moisture migration kinetics between broken and unbroken kernels caused faster hydration of the cores of broken rice kernels, with greater starch leach-out during cooking affecting the texture of the cooked rice. The texture of cooked rice can be controlled, to some extent, by varying the proportion of broken kernels in milled rice. © 2012 Society of Chemical Industry.

  10. A Study on soybean cultivar and rhizobium strain interaction related to biological nitrogen fixation in different soils

    International Nuclear Information System (INIS)

    Pirvali Biranvand, N.

    1999-01-01

    Since, symbiotic effectiveness is affected by three important factors such as bacteria genotype, plant cultivar and environmental conditions (e.g. soil properties). In this research, simple and interaction effects of the first two factors about symbiosis of three soybean cultivar, which are most commonly cultivated soybean, with several commercial strain of bacteria with three different soils is investigated. For this purpose five Bradyrhizobium japonicum commercial strains (Rhizoking, Helinitro, Goldoat, Biodoz and CB 1809) were taken from soil and water rea search institute. Based on assurance of bacteria strains purity and ineffectiveness with cultivars, for comparison of strains symbiotic effectiveness with soybean cultivars and the best strain selection performed a factorial experiment with RCBD in 24 treatments and 4 replication. The seeds of soybean cultivars were cultivated in Growth chamber under Leonard jar system. The treatment used were 3 levels of soybean cultivar, 5 levels of Bradyrhizobium strains and 3 levels of Nitrogen (0, 35 and 70 PPM). Plants were fed with Brought on and Dil worth solution (1970) for 75 days. Then, plants were harvested and dried. Selective parameters were analysed by MSTATC program. The results indicated that, all bacteria stains were highly effective as far as symbiotic effectiveness is concerned. Eventually Rhizoking, Gold coat and Helinitro stains selected for soybean inoculation. Provided for pot culture, two soil samples from soybean original planting area (in the subregion of Gorgan and Sari cities) and another sample from Karaj countryside were taken with moderate, high and zero symbiont indigenous bacteria levels respectively. For study of interaction and simple effects of Bacteria strain and soybean cultivar in each soil; a factorial experiment with RCBD in 4 replication performed. Factors were contained soybean cultivar (three levels) and three Bacteria strain with a blank treatment for inoculation. In this respect

  11. Physiological studies on photochemical oxidants injury in rice plants. I. Varietal difference of abscisic acid content and its relation to the resistance to ozone

    Energy Technology Data Exchange (ETDEWEB)

    Jeong, Y.H.; Nakamura, H.; Ota, Y.

    1980-01-01

    In order to determine the abscisic acid relationships in the resistance of the rice plants to ozone, endogeneous abscisic acid content in varieties with different sensitivity to ozone was examined. The cultivars differed in their visible injury to ozone fumigation. Nipponbare and Jinheung were more sensitive than Tongil, Milyang No. 23 and Te-tep. Endogeneous abscisic acid content in the resistant variety (Tongil) was higher than in the sensitive one (Nipponbare). Visible injury caused by ozone fumigation was decreased by application of abscisic acid. Abscisic acid content in rice cultivars was found to increase differently depending on varieties response to ozone fumigation (0.3 ppM for 3 hours). The increase of abscisic acid content caused by ozone fumigation was higher in Nipponbare than in Tongil, although the endogeneous level of abscisic acid was higher in Tongil than Nipponbare.

  12. Fusarium head blight incidence and mycotoxin accumulation in three durum wheat cultivars in relation to sowing date and density

    Science.gov (United States)

    Gorczyca, Anna; Oleksy, Andrzej; Gala-Czekaj, Dorota; Urbaniak, Monika; Laskowska, Magdalena; Waśkiewicz, Agnieszka; Stępień, Łukasz

    2018-02-01

    Durum wheat ( Triticum turgidum var. durum) is an important crop in Europe, particularly in the Mediterranean countries. Fusarium head blight (FHB) is considered as one of the most damaging diseases, resulting in yield and quality reduction as well as contamination of grain with mycotoxins. Three winter durum wheat cultivars originating from Austria, Slovakia, and Poland were analyzed during 2012-2014 seasons for FHB incidence and Fusarium mycotoxin accumulation in harvested grain. Moreover, the effects of sowing density and delayed sowing date were evaluated in the climatic conditions of Southern Poland. Low disease severity was observed in 2011/2012 in all durum wheat cultivars analyzed, and high FHB occurrence was recorded in 2012/2013 and 2013/2014 seasons. Fusarium graminearum was the most abundant pathogen, followed by Fusarium avenaceum. Through all three seasons, cultivar Komnata was the most susceptible to FHB and to mycotoxin accumulation, while cultivars Auradur and IS Pentadur showed less symptoms. High susceptibility of cv. Komnata was reflected by the number of Fusarium isolates and elevated mycotoxin (deoxynivalenol, zearalenone, and moniliformin) content in the grain of this cultivar across all three seasons. Nivalenol was identified in the samples of cv. Komnata only. Genotype-dependent differences in FHB susceptibility were observed for the plants sown at optimal date but not at delayed sowing date. It can be hypothesized that cultivars bred in Austria and Slovakia show less susceptibility towards FHB than the cultivar from Poland because of the environmental conditions allowing for more efficient selection of breeding materials.

  13. Yield gap analysis in long-term experiments with intensive rice cultivation

    International Nuclear Information System (INIS)

    Laureles, E.V.; Correa, T. Jr.; Buresh, R.J.

    2007-01-01

    The long-term continuous cropping experiment at IRRI is cultivated with three rice crops in a year, making it the world's most intensively cropped long-term rice experiment. The availability of comprehensive rice production records, compiled weather data, and tested crop models provides a means to evaluate long-term trends in measured and potential yields and yield gaps in this rice production system. Yield trends were assessed using the highest yielding cultivar in each cropping season from 1979 to 2005. Potential yield of the highest yielding cultivar in each season was determined using three rice models (ORYZA, TERM, and CERES) run with the actual transplanting and harvest dates for the cultivar. The yield gap was determined from the difference between the simulated potential grain yield and the measured grain yield. Measured and potential yields and the yield gap varied across seasons and years. Measured yields were higher in the dry season than in the early and late wet seasons. The yield gap tended to be higher in the wet season than in the dry season. Climatic parameters, particularly solar radiation, influenced the performance of rice cultivars. The relatively larger yield gaps in the late wet season than in the dry season were associated with increased spikelet sterility. The cumulative measured yield for the three annual rice crop was near 80 percent of the annual yield potential in years with best practices for fertilizer N and crop management. The long term trends suggest that effective timing and rates of N fertilization and effective control of diseases were critical in achieving 80 percent of the annual yield potential

  14. All roads lead to weediness: Patterns of genomic divergence reveal extensive recurrent weedy rice origins from South Asian Oryza.

    Science.gov (United States)

    Huang, Zhongyun; Young, Nelson D; Reagon, Michael; Hyma, Katie E; Olsen, Kenneth M; Jia, Yulin; Caicedo, Ana L

    2017-06-01

    Weedy rice (Oryza spp.), a weedy relative of cultivated rice (O. sativa), infests and persists in cultivated rice fields worldwide. Many weedy rice populations have evolved similar adaptive traits, considered part of the 'agricultural weed syndrome', making this an ideal model to study the genetic basis of parallel evolution. Understanding parallel evolution hinges on accurate knowledge of the genetic background and origins of existing weedy rice groups. Using population structure analyses of South Asian and US weedy rice, we show that weeds in South Asia have highly heterogeneous genetic backgrounds, with ancestry contributions both from cultivated varieties (aus and indica) and wild rice. Moreover, the two main groups of weedy rice in the USA, which are also related to aus and indica cultivars, constitute a separate origin from that of Asian weeds. Weedy rice populations in South Asia largely converge on presence of red pericarps and awns and on ease of shattering. Genomewide divergence scans between weed groups from the USA and South Asia, and their crop relatives are enriched for loci involved in metabolic processes. Some candidate genes related to iconic weedy traits and competitiveness are highly divergent between some weed-crop pairs, but are not shared among all weed-crop comparisons. Our results show that weedy rice is an extreme example of recurrent evolution, and suggest that most populations are evolving their weedy traits through different genetic mechanisms. © 2017 John Wiley & Sons Ltd.

  15. Chemometric classification of pigmented rice varieties based on antioxidative properties in relation to color

    Directory of Open Access Journals (Sweden)

    Phaiwan Pramai

    2016-10-01

    Full Text Available The pigmented Thai rice varieties including red and black color and non-pigmented rice (white collected from different growth sites in the north of Thailand and were determined for color and antioxidant properties. Anthocyanins were the major compound in group of black rice (21.15-441.96 mg/100 g rice. Total phenolic, flavonoid, and -tocopherol contents were highest in the black rice followed by red rice and antioxidant capacities were predominant in pigmented varieties. Black rice grown in mountainous area presented the highest antioxidant activity compared to the other growing locations. The color parameters, especially L* value presented the negative correlations with antioxidant parameters, while the antioxidant contents, excepted -oryzanol content had significant correlation with antioxidant capacities. Pigmented rice varieties could be clearly classified into 4 groups using PCA and HCA, which provided a good indicator to classify pigmented rice varieties based on color and antioxidative properties.

  16. RESPOSTA DE DUAS CULTIVARES DE ARROZ DE TERRAS ALTAS EM CONVIVÊNCIA COM Brachiaria brizantha

    Directory of Open Access Journals (Sweden)

    Abdias Alves De Oliveira

    2009-01-01

    Full Text Available The objective of this work was to evaluate to the sowing time of the Brachiaria brizantha forage intercrop with two upland rice cultivars on the agronomics characteristics of both species. It was used randomized blocks in experimental design arranged in factorial scheme 2x2+4, with four replicates. The first factor was constituted by the upland rice cultivars (BRS Primavera e BRSMG Curinga and the second factor by two sowing times of B. brizantha forage (simultaneous sowing between rice and forage and sowing of the forage in the flowering of the rice. The additional treatments consisted of the sole crops upland rice cultivars and B. brizantha forage for each sowing time. In rice was evaluated the height of the plants, bedding, difficulty of the harvest, the number of panicles per area, grain per panicles, percentage of full and empty grains, 100-grain mass and grain yield. In the B. brizantha forage was evaluated the height of the tillers, the total dry mass and the rate of cultural growth. It was observed that the B. brizantha forage interfered in the productivity components of both upland rice cultivars and difficult significantly the harvest of the rice. The upland rice cultivars showed small competitive capacity with the B. brizantha forage when the establishment of the forage occurred simultaneously to the rice. However, to the measure that the sowing was occurred with the established rice already, the B. brizantha forage had his growth suppressed.

  17. Mitochondrial Genome Analysis of Wild Rice (Oryza minuta) and Its Comparison with Other Related Species.

    Science.gov (United States)

    Asaf, Sajjad; Khan, Abdul Latif; Khan, Abdur Rahim; Waqas, Muhammad; Kang, Sang-Mo; Khan, Muhammad Aaqil; Shahzad, Raheem; Seo, Chang-Woo; Shin, Jae-Ho; Lee, In-Jung

    2016-01-01

    Oryza minuta (Poaceae family) is a tetraploid wild relative of cultivated rice with a BBCC genome. O. minuta has the potential to resist against various pathogenic diseases such as bacterial blight (BB), white backed planthopper (WBPH) and brown plant hopper (BPH). Here, we sequenced and annotated the complete mitochondrial genome of O. minuta. The mtDNA genome is 515,022 bp, containing 60 protein coding genes, 31 tRNA genes and two rRNA genes. The mitochondrial genome organization and the gene content at the nucleotide level are highly similar (89%) to that of O. rufipogon. Comparison with other related species revealed that most of the genes with known function are conserved among the Poaceae members. Similarly, O. minuta mt genome shared 24 protein-coding genes, 15 tRNA genes and 1 ribosomal RNA gene with other rice species (indica and japonica). The evolutionary relationship and phylogenetic analysis revealed that O. minuta is more closely related to O. rufipogon than to any other related species. Such studies are essential to understand the evolutionary divergence among species and analyze common gene pools to combat risks in the current scenario of a changing environment.

  18. Jasmonic Acid, Abscisic Acid, and Salicylic Acid Are Involved in the Phytoalexin Responses of Rice to Fusarium fujikuroi, a High Gibberellin Producer Pathogen.

    Science.gov (United States)

    Siciliano, Ilenia; Amaral Carneiro, Greice; Spadaro, Davide; Garibaldi, Angelo; Gullino, Maria Lodovica

    2015-09-23

    Fusarium fujikuroi, the causal agent of bakanae disease, is the main seedborne pathogen on rice. To understand the basis of rice resistance, a quantitative method to simultaneously detect phytohormones and phytoalexins was developed by using HPLC-MS/MS. With this method dynamic profiles and possible interactions of defense-related phytohormones and phytoalexins were investigated on two rice cultivars, inoculated or not with F. fujikuroi. In the resistant cultivar Selenio, the presence of pathogen induced high production of phytoalexins, mainly sakuranetin, and symptoms of bakanae were not observed. On the contrary, in the susceptible genotype Dorella, the pathogen induced the production of gibberellin and abscisic acid and inhibited jasmonic acid production, phytoalexins were very low, and bakanae symptoms were observed. The results suggested that a wide range of secondary metabolites are involved in plant defense against pathogens and phytoalexin synthesis could be an important factor for rice resistance against bakanae disease.

  19. Canopy structure and physiology related to rootstock vigour in early-ripening peach cultivar Flordastar

    International Nuclear Information System (INIS)

    Motisi, A.; Grutta, I.; Pernice, F.; Caruso, T.

    2005-01-01

    Canopy architectural and eco-physiological traits were measured on five-year-old early-ripening peach cv Flordastar trees grafted on GF 677 and MrS 2/5 rootstocks. Data are reported both on measurements performed directly on the trees, for branches and twigs characters, and on the fractal dimension (D), estimated by the 'box counting' method taken from digital images of Winter-dormant trees, adopted as an indicator of canopy complexity. Results are discussed in relation to the modification of the canopy microclimate as a consequence of the effects of rootstock on tree architecture and water consumption, the latter measured by using sap flow (HPV) probes. A lower degree of canopy complexity was observed in trees grafted onto MrS 2/5 and this, in turn, was related to a higher degree of aerodynamic contact of the tree with the atmosphere (expressed in terms of leaf boundary conductance) and to a higher solar radiation intensity along the canopy profile. These differences did not affect fruit quality in terms of size, red skin over-colour and soluble solid content. In MrS 2/5, the higher light availability at all levels along canopy profile was related to a moderate water deficit status, even under full-irrigation conditions, as evidenced by the lower stem water potential (below -1.3 MPa) and by a lower transpiration rate (about one-half of the values observed on GF 677). At tree-level, MrS 2/5 had a daily water consumption that, also in relation to the lower leaf area per tree, resulted as low as 25% of the values observed on GF 677. The latter, even carrying a significantly higher leaf area and higher water consumption, never showed apparent symptoms of water deficit [it

  20. Survey of rice blast race identity for blast resistance gene identification in the USA and Puerto Rico

    Science.gov (United States)

    Rice blast disease is a significant threat to stable rice production in the USA and worldwide. The major resistance gene (Pi-ta) located within a cluster of resistance genes on rice chromosome 12 has been demonstrated to confer resistance to the rice blast disease. Katy, a rice cultivar released in ...

  1. Physiological characteristics and related gene expression of after-ripening on seed dormancy release in rice.

    Science.gov (United States)

    Du, W; Cheng, J; Cheng, Y; Wang, L; He, Y; Wang, Z; Zhang, H

    2015-11-01

    After-ripening is a common method used for dormancy release in rice. In this study, the rice variety Jiucaiqing (Oryza sativa L. subsp. japonica) was used to determine dormancy release following different after-ripening times (1, 2 and 3 months). Germination speed, germination percentage and seedling emergence increased with after-ripening; more than 95% germination and 85% seedling emergence were observed following 1 month of after-ripening within 10 days of imbibition, compared with rice dormancy release. Dormancy release by after-ripening is mainly correlated with a rapid decline in ABA content and increase in IAA content during imbibition. Subsequently, GA(1)/ABA, GA(7)/ABA, GA(12)/ABA, GA(20)/ABA and IAA/ABA ratios significantly increased, while GA(3)/ABA, GA(4)/ABA and GAs/IAA ratio significantly decreased in imbibed seeds following 3 months of after-ripening, thereby altering α-amylase activity during seed germination. Peak α-amylase activity occurred at an earlier germination stage in after-ripened seeds than in freshly harvested seeds. Expression of ABA, GA and IAA metabolism genes and dormancy-related genes was regulated by after-ripening time upon imbibition. Expression of OsCYP707A5, OsGA2ox1, OsGA2ox2, OsGA2ox3, OsILR1, OsGH3-2, qLTG3-1 and OsVP1 increased, while expression of Sdr4 decreased in imbibed seeds following 3 months of after-ripening. Dormancy release through after-ripening might be involved in weakening tissues covering the embryo via qLTG3-1 and decreased ABA signalling and sensitivity via Sdr4 and OsVP1. © 2015 German Botanical Society and The Royal Botanical Society of the Netherlands.

  2. Effects of the inoculation of Burkholderia vietnamensis and related endophytic diazotrophic bacteria on grain yield of rice.

    Science.gov (United States)

    Govindarajan, Munusamy; Balandreau, Jacques; Kwon, Soon-Wo; Weon, Hang-Yeon; Lakshminarasimhan, Cunthipuram

    2008-01-01

    During a survey of endophytic diazotrophic bacteria associated with different rice varieties in Tamilnadu, some "endophytes" were obtained. Thirteen bacterial isolates from surface-sterilized roots and shoots were obtained in pure culture, which produced indole acetic acid (IAA) and reduced acetylene to ethylene. Polymerase chain reaction (PCR) amplification confirmed the presence of nif-H gene in all the isolates. Morphological, biochemical, and molecular characteristics indicated that all of them belonged to the genus Burkholderia One of them, MGK3, was consistently more active in reducing acetylene, and 16S rDNA sequences of isolate MGK3 confirmed its identification as Burkholderia vietnamiensis. Colonization of rice root was confirmed by strain MGK3 marked with gusA gene. The inoculated roots showed a blue color, which was most intense at the points of lateral root emergence and at the root tip. Transverse sections of roots, 15 days after inoculation, revealed beta-glucuronidase (GUS) activity within many of the cortical intercellular spaces next to the stele and within the aerenchyma. Nitrogen fixation was quantified by using (15)N isotope dilution method with two different cultivars grown in pot and field experiments. Higher nitrogen fixation was observed in variety Ponni than in ADT-43, where nearly 42% (field) and 40% (pot) of the nitrogen was derived from the atmosphere (% Ndfa). Isolate MGK3 was used to inoculate rice seedlings in a comparison with four other diazotrophs, viz., Gluconacetobacter diazotrophicus LMG7603, Herbaspirillum seropedicae LMG6513, Azospirillum lipoferum 4B LMG4348, and B. vietnamiensis LMG10929. They were used to conduct two pot and four field inoculation experiments. MGK3 alone, and combined with other diazotrophs, performed best under both pot and field conditions: combined inoculation produced yield increases between 9.5 and 23.6%, while MGK3 alone increased yield by 5.6 to 12.16% over the uninoculated control treatment.

  3. Genetic divergence of common bean cultivars.

    Science.gov (United States)

    Veloso, J S; Silva, W; Pinheiro, L R; Dos Santos, J B; Fonseca, N S; Euzebio, M P

    2015-09-22

    The aim of this study was to evaluate genetic divergence in the 'Carioca' (beige with brown stripes) common bean cultivar used by different institutions and in 16 other common bean cultivars used in the Rede Cooperativa de Pesquisa de Feijão (Cooperative Network of Common Bean Research), by using simple sequence repeats associated with agronomic traits that are highly distributed in the common bean genome. We evaluated 22 polymorphic loci using bulks containing DNA from 30 plants. There was genetic divergence among the Carioca cultivar provided by the institutions. Nevertheless, there was lower divergence among them than among the other cultivars. The cultivar used by Instituto Agronômico do Paraná was the most divergent in relation to the Carioca samples. The least divergence was observed among the samples used by Universidade Federal de Lavras and by Embrapa Arroz e Feijão. Of all the cultivars, 'CNFP 10104' and 'BRSMG Realce' showed the greatest dissimilarity. The cultivars were separated in two groups of greatest similarity using the Structure software. Genetic variation among cultivars was greater than the variation within or between the groups formed. This fact, together with the high estimate of heterozygosity observed and the genetic divergence of the samples of the Carioca cultivar in relation to the original provided by Instituto Agronômico de Campinas, indicates a mixture of cultivars. The high divergence among cultivars provides potential for the utilization of this genetic variability in plant breeding.

  4. Health effects related to pesticide use among rice farmers of the MUDA area

    International Nuclear Information System (INIS)

    Jamal Hisham Hashim; Noor Hassim Ismail; Syarif Husin Lubis; Syed Mohd Syed Alwee; Noraziah Daud

    2002-01-01

    The objectives of this study were to assess the knowledge and practices related to pesticide handling and use among rice farmers; the types of pesticides most often associated with exposure symptoms; the types of exposure symptoms experienced by the farmers; and the neurological effect among farmers as shown by serum cholinesterase inhibition, as a result of exposure to carbarnate and organophosphate pesticides. Results indicate that farmers knowledge is still inadequate with respect to the need for proper storage of pesticides, the danger of pesticide exposure during mixing, proper disposal of pesticide containers, early symptoms of pesticide poisoning, and the possibility of pesticide absorption through the skin. Both farmers' knowledge and practices on the use of personal protective equipment (PPE) are unsatisfactory. Improper practices include the use of increased dosages and mixing of pesticides. The prevalence of pesticide exposure symptoms increased from 1991 to 1993. A majority of the health effects are due to exposure to herbicides. Among the farmers examined, 29% had below normal serum cholinesterase level. In conclusion, indiscriminate use of pesticides in rice farming has resulted in recognisable impact on the farmers' state of health even though the situation is not alarming. (Author)

  5. Developing selection protocols for weed competitiveness in aerobic rice

    NARCIS (Netherlands)

    Zhao, D.L.; Atlin, G.N.; Bastiaans, L.; Spiertz, J.H.J.

    2006-01-01

    Aerobic rice production systems, wherein rice is dry-sown in non-puddled soil and grown as an upland crop, offer large water savings but are subject to severe weed infestation. Weed-competitive cultivars will be critical to the adoption of aerobic rice production by farmers. Breeding

  6. A bell pepper cultivar tolerant to chilling enhanced nitrogen allocation and stress-related metabolite accumulation in the roots in response to low root-zone temperature.

    Science.gov (United States)

    Aidoo, Moses Kwame; Sherman, Tal; Lazarovitch, Naftali; Fait, Aaron; Rachmilevitch, Shimon

    2017-10-01

    Two bell pepper (Capsicum annuum) cultivars, differing in their response to chilling, were exposed to three levels of root-zone temperatures. Gas exchange, shoot and root phenology, and the pattern of change of the central metabolites and secondary metabolites caffeate and benzoate in the leaves and roots were profiled. Low root-zone temperature significantly inhibited gaseous exchange, with a greater effect on the sensitive commercial pepper hybrid (Canon) than on the new hybrid bred to enhance abiotic stress tolerance (S103). The latter was less affected by the treatment with respect to plant height, shoot dry mass, root maximum length, root projected area, number of root tips and root dry mass. More carbon was allocated to the leaves of S103 than nitrogen at 17°C, while in the roots at 17°C, more nitrogen was allocated and the ratio between C/N decreased. Metabolite profiling showed greater increase in the root than in the leaves. Leaf response between the two cultivars differed significantly. The roots accumulated stress-related metabolites including γ-aminobutyric acid (GABA), proline, galactinol and raffinose and at chilling (7°C) resulted in an increase of sugars in both cultivars. Our results suggest that the enhanced tolerance of S103 to root cold stress, reflected in the relative maintenance of shoot and root growth, is likely linked to a more effective regulation of photosynthesis facilitated by the induction of stress-related metabolism. © 2017 Scandinavian Plant Physiology Society.

  7. Shading effect on generative characters of upland red rice of Southeast Sulawesi, Indonesia

    Science.gov (United States)

    Muhidin; Syam’un, E.; Kaimuddin; Musa, Y.; Sadimantara, G. R.; Usman; Leomo, S.; Rakian, T. C.

    2018-05-01

    Upland red rice (Oryza sativa) contains anthocyanin, a phenolic compounds that can act as antioxidants and functional food for human dietary. The content of functional food on upland red rice is influenced by shading condition, but the production is also influenced by environmental condition, especially the availability of light. The study aims is to assess and analyze the effect of shade on the growth and production of upland red rice. The research was conducted using the quantitative method to obtain the optimal shading condition that can increase the rice anthocyanin content and relatively high production. The research was arranged in split plot design, with shade as main plot and the different of cultivar as sub plot with three replications. The shading treatment consist of 4 levels as follows: n1=shade level 75%. The cultivar tested were (v1) = Labandiri, (v2) = Jangkobembe, (v3) = Ranggohitam, and (v4) = Paedara. The rice planted in between teak wood trees with different age and level of canopy. The research reveals that shades had an effect in decreasing plant production (the higher level of shade, the higher the decrease level of production), but the shades can improve the quality of red rice through the increase of anthocyanin content.

  8. A rare sugar, d-allose, confers resistance to rice bacterial blight with upregulation of defense-related genes in Oryza sativa.

    Science.gov (United States)

    Kano, Akihito; Gomi, Kenji; Yamasaki-Kokudo, Yumiko; Satoh, Masaru; Fukumoto, Takeshi; Ohtani, Kouhei; Tajima, Shigeyuki; Izumori, Ken; Tanaka, Keiji; Ishida, Yutaka; Tada, Yasuomi; Nishizawa, Yoko; Akimitsu, Kazuya

    2010-01-01

    We investigated responses of rice plant to three rare sugars, d-altrose, d-sorbose, and d-allose, due to establishment of mass production methods for these rare sugars. Root growth and shoot growth were significantly inhibited by d-allose but not by the other rare sugars. A large-scale gene expression analysis using a rice microarray revealed that d-allose treatment causes a high upregulation of many defense-related, pathogenesis-related (PR) protein genes in rice. The PR protein genes were not upregulated by other rare sugars. Furthermore, d-allose treatment of rice plants conferred limited resistance of the rice against the pathogen Xanthomonas oryzae pv. oryzae but the other tested sugars did not. These results indicate that d-allose has a growth inhibitory effect but might prove to be a candidate elicitor for reducing disease development in rice.

  9. Diurnal patterns of photosynthesis and water relations for four orchard-grown pomegranate (Punica granatum L.) cultivars

    Science.gov (United States)

    Long-term drought, coupled with tighter regulations on limited water resources have caused growers to seek drought tolerant cultivars of common tree crops in California. Yet information on pomegranate physiology is lacking, even though it is grown throughout the world in various climates. The purpos...

  10. Analysis of DNA methylation related to rice adult plant resistance to bacterial blight based on methylation-sensitive AFLP (MSAP) analysis.

    Science.gov (United States)

    Sha, A H; Lin, X H; Huang, J B; Zhang, D P

    2005-07-01

    DNA methylation is known to play an important role in the regulation of gene expression in eukaryotes. The rice cultivar Wase Aikoku 3 becomes resistant to the blight pathogen Xanthomonas oryzae pv. oryzae at the adult stage. Using methylation-sensitive amplified polymorphism (MSAP) analysis, we compared the patterns of cytosine methylation in seedlings and adult plants of the rice cultivar Wase Aikoku 3 that had been inoculated with the pathogen Xanthomonas oryzae pv. oryzae, subjected to mock inoculation or left untreated. In all, 2000 DNA fragments, each representing a recognition site cleaved by either or both of two isoschizomers, were amplified using 60 pairs of selective primers. A total of 380 sites were found to be methylated. Of these, 45 showed differential cytosine methylation among the seedlings and adult plants subjected to different treatments, and overall levels of methylation were higher in adult plants than in seedlings. All polymorphic fragments were sequenced, and six showed homology to genes that code for products of known function. Northern analysis of three fragments indicated that their expression varied with methylation pattern, with hypermethylation being correlated with repression of transcription, as expected. The results suggest that significant differences in cytosine methylation exist between seedlings and adult plants, and that hypermethylation or hypomethylation of specific genes may be involved in the development of adult plant resistance (APR) in rice plants.

  11. Genetic diversity of Iranian rice germplasm based on morphological traits

    Directory of Open Access Journals (Sweden)

    nade ali bagheri

    2009-06-01

    Full Text Available Study of genetic diversity of rice is very important for rice breeders. In this study 64 genotypes for 14 agronomic traits were evaluated. Phenotypic variation coefficients of some of traits were high which showed essential variation in this traits. Principal component analysis detected 6 components which explained 74.66 percent of the total variations. The first component was related to generative traits such as number of spiklet per panicle, number of full grain per panicle, date of 50% flowering and length of panicle. In the third component, the date of complete maturity with -0.730 has negative effects on yield. Correlation analysis of morphological traits indicated a negative and significant relationship between early maturity and plant height, which showed early maturity cultivars had higher plant type. Results of stepwise regression analysis for early maturity, indicated that three traits such as date of 50% flowering, number of full grain per panicle and plant height showed higher variation and explained 54.3 percent of total early maturity variations. All traits were classified into 2 groups, by cluster analysis and traits belonged to early maturity classified as a sub-group. Genotypes were classified into 4 groups by using method of Ward,s minimum variance and squared Euclidean distance. Native cultivars from the view point of early maturity and yield components had useful information for rice breeding. Key words: Genetic diversity, rice, morphological traits.

  12. Influence of cooking method on arsenic retention in cooked rice related to dietary exposure.

    Science.gov (United States)

    Rahman, M Azizur; Hasegawa, H; Rahman, M Arifur; Rahman, M Mahfuzur; Miah, M A Majid

    2006-10-15

    Arsenic concentration in raw rice is not only the determinant in actual dietary exposure. Though there have been many reports on arsenic content in raw rice and different tissues of rice plant, little is known about arsenic content retained in cooked rice after being cooked following the traditional cooking methods employed by the people of arsenic epidemic areas. A field level experiment was conducted in Bangladesh to investigate the influence of cooking methods on arsenic retention in cooked rice. Rice samples were collected directly from a severely arsenic affected area and also from an unaffected area, to compare the results. Rice was cooked according to the traditional methods employed by the population of subjected areas. Arsenic concentrations were 0.40+/-0.03 and 0.58+/-0.12 mg/kg in parboiled rice of arsenic affected area, cooked with excess water and 1.35+/-0.04 and 1.59+/-0.07 mg/kg in gruel for BRRI dhan28 and BRRI hybrid dhan1, respectively. In non-parboiled rice, arsenic concentrations were 0.39+/-0.04 and 0.44+/-0.03 mg/kg in rice cooked with excess water and 1.62+/-0.07 and 1.74+/-0.05 mg/kg in gruel for BRRI dhan28 and BRRI hybrid dhan1, respectively. Total arsenic content in rice, cooked with limited water (therefore gruel was absorbed completely by rice) were 0.89+/-0.07 and 1.08+/-0.06 mg/kg (parboiled) and 0.75+/-0.04 and 1.09+/-0.06 mg/kg (non-parboiled) for BRRI dhan28 and BRRI hybrid dhan1, respectively. Water used for cooking rice contained 0.13 and 0.01 mg of As/l for contaminated and non-contaminated areas, respectively. Arsenic concentrations in cooked parboiled and non-parboiled rice and gruel of non-contaminated area were significantly lower (p<0.01) than that of contaminated area. The results imply that cooking of arsenic contaminated rice with arsenic contaminated water increases its concentration in cooked rice.

  13. Domesticated, Genetically Engineered, and Wild Plant Relatives Exhibit Unintended Phenotypic Differences: A Comparative Meta-Analysis Profiling Rice, Canola, Maize, Sunflower, and Pumpkin

    Directory of Open Access Journals (Sweden)

    Alejandra Hernández-Terán

    2017-12-01

    Full Text Available Agronomic management of plants is a powerful evolutionary force acting on their populations. The management of cultivated plants is carried out by the traditional process of human selection or plant breeding and, more recently, by the technologies used in genetic engineering (GE. Even though crop modification through GE is aimed at specific traits, it is possible that other non-target traits can be affected by genetic modification due to the complex regulatory processes of plant metabolism and development. In this study, we conducted a meta-analysis profiling the phenotypic consequences of plant breeding and GE, and compared modified cultivars with wild relatives in five crops of global economic and cultural importance: rice, maize, canola, sunflower, and pumpkin. For these five species, we analyzed the literature with documentation of phenotypic traits that are potentially related to fitness for the same species in comparable conditions. The information was analyzed to evaluate whether the different processes of modification had influenced the phenotype in such a way as to cause statistical differences in the state of specific phenotypic traits or grouping of the organisms depending on their genetic origin [wild, domesticated with genetic engineering (domGE, and domesticated without genetic engineering (domNGE]. In addition, we tested the hypothesis that, given that transgenic plants are a construct designed to impact, in many cases, a single trait of the plant (e.g., lepidopteran resistance, the phenotypic differences between domGE and domNGE would be either less (or inexistent than between the wild and domesticated relatives (either domGE or domNGE. We conclude that (1 genetic modification (either by selective breeding or GE can be traced phenotypically when comparing wild relatives with their domesticated relatives (domGE and domNGE and (2 the existence and the magnitude of the phenotypic differences between domGE and domNGE of the same crop

  14. The Tyrosine Aminomutase TAM1 Is Required for β-Tyrosine Biosynthesis in Rice

    Science.gov (United States)

    Yan, Jian; Aboshi, Takako; Teraishi, Masayoshi; Strickler, Susan R.; Spindel, Jennifer E.; Tung, Chih-Wei; Takata, Ryo; Matsumoto, Fuka; Maesaka, Yoshihiro; McCouch, Susan R.; Okumoto, Yutaka; Mori, Naoki; Jander, Georg

    2015-01-01

    Non-protein amino acids, often isomers of the standard 20 protein amino acids, have defense-related functions in many plant species. A targeted search for jasmonate-induced metabolites in cultivated rice (Oryza sativa) identified (R)-β-tyrosine, an isomer of the common amino acid (S)-α-tyrosine in the seeds, leaves, roots, and root exudates of the Nipponbare cultivar. Assays with 119 diverse cultivars showed a distinct presence/absence polymorphism, with β-tyrosine being most prevalent in temperate japonica cultivars. Genetic mapping identified a candidate gene on chromosome 12, which was confirmed to encode a tyrosine aminomutase (TAM1) by transient expression in Nicotiana benthamiana and in vitro enzyme assays. A point mutation in TAM1 eliminated β-tyrosine production in Nipponbare. Rice cultivars that do not produce β-tyrosine have a chromosome 12 deletion that encompasses TAM1. Although β-tyrosine accumulation was induced by the plant defense signaling molecule jasmonic acid, bioassays with hemipteran and lepidopteran herbivores showed no negative effects at physiologically relevant β-tyrosine concentrations. In contrast, root growth of Arabidopsis thaliana and other tested dicot plants was inhibited by concentrations as low as 1 μM. As β-tyrosine is exuded into hydroponic medium at higher concentrations, it may contribute to the allelopathic potential of rice. PMID:25901084

  15. Switchgrass cultivar EG1101

    Science.gov (United States)

    Bouton, Joseph H; Wood, Donald T

    2012-11-27

    A switchgrass cultivar designated EG1101 is disclosed. Also disclosed are seeds of switchgrass cultivar EG1101, plants of switchgrass EG1101, plant parts of switchgrass cultivar EG1101 and methods for producing a switchgrass plant produced by crossing switchgrass cultivar EG1101 with itself or with another switchgrass variety. Methods are also described for producing a switchgrass plant containing in its genetic material one or more transgenes and to the transgenic switchgrass plants and plant parts produced by those methods. Switchgrass cultivars or breeding cultivars and plant parts derived from switchgrass variety EG1101, methods for producing other switchgrass cultivars, lines or plant parts derived from switchgrass cultivar EG1101 and the switchgrass plants, varieties, and their parts derived from use of those methods are described herein. Hybrid switchgrass seeds, plants and plant parts produced by crossing the cultivar EG1101 with another switchgrass cultivar are also described.

  16. Abscisic acid content and the expression of genes related to its metabolism during maturation of triticale grains of cultivars differing in pre-harvest sprouting susceptibility.

    Science.gov (United States)

    Fidler, Justyna; Zdunek-Zastocka, Edyta; Prabucka, Beata; Bielawski, Wiesław

    2016-12-01

    Abscisic acid (ABA) is a plant hormone that plays a predominant role in the onset and maintenance of primary dormancy. Peak ABA accumulation in embryos of triticale grains was observed before any significant loss of water and was higher in Fredro, a cultivar less susceptible to pre-harvest sprouting (PHS), than in Leontino, a cultivar more sensitive to PHS. At full maturity, embryonic ABA content in Fredro was twice as high as in Leontino. Two full-length cDNAs of 9-cis-epoxycarotenoid dioxygenase (TsNCED1, TsNCED2), an enzyme involved in ABA biosynthesis, and two full-length cDNAs of ABA 8'-hydroxylase (TsABA8'OH1 and TsABA8'OH2), an enzyme involved in ABA catabolism, were identified in triticale grains and characterized. The maximum transcript level of both TsNCED1 and TsNCED2 preceded the peak of ABA accumulation, suggesting that both TsNCEDs contribute to reach this peak, although the expression of TsNCED1 was significantly higher in Fredro than in Leontino. High expression of TsABA8'OH2 and TsABA8'OH1 was observed long before and at the end of the ABA accumulation peak, respectively, but no differences were observed between cultivars. The obtained results suggest that mainly TsNCED1 might be related to the higher ABA content and higher resistance of Fredro to PHS. However, Fredro embryos not only have higher ABA content, but also exhibit greater sensitivity to ABA, which may also have a significant effect on grain dormancy and lower susceptibility to PHS for grains of this cultivar. Copyright © 2016 Elsevier GmbH. All rights reserved.

  17. Sorghum and rice: Mali

    International Nuclear Information System (INIS)

    2003-01-01

    Agriculture is the mainstay of the Malian economy and yet cereal imports absorb 6.5% of GDP. Food self-sufficiency is therefore a national priority. The Joint FAO/IAEA Division is supporting a programme to improve local varieties of sorghum and rice by using nuclear techniques to develop new cultivars that will produce higher yields under Mali's semi-arid climatic conditions. (IAEA)

  18. LABA1, a Domestication Gene Associated with Long, Barbed Awns in Wild Rice.

    Science.gov (United States)

    Hua, Lei; Wang, Diane R; Tan, Lubin; Fu, Yongcai; Liu, Fengxia; Xiao, Langtao; Zhu, Zuofeng; Fu, Qiang; Sun, Xianyou; Gu, Ping; Cai, Hongwei; McCouch, Susan R; Sun, Chuanqing

    2015-07-01

    Common wild rice (Oryza rufipogon), the wild relative of Asian cultivated rice (Oryza sativa), flaunts long, barbed awns, which are necessary for efficient propagation and dissemination of seeds. By contrast, O. sativa cultivars have been selected to be awnless or to harbor short, barbless awns, which facilitate seed processing and storage. The transition from long, barbed awns to short, barbless awns was a crucial event in rice domestication. Here, we show that the presence of long, barbed awns in wild rice is controlled by a major gene on chromosome 4, LONG AND BARBED AWN1 (LABA1), which encodes a cytokinin-activating enzyme. A frame-shift deletion in LABA1 of cultivated rice reduces the cytokinin concentration in awn primordia, disrupting barb formation and awn elongation. Sequencing analysis demonstrated low nucleotide diversity and a selective sweep encompassing an ∼800-kb region around the derived laba1 allele in cultivated rice. Haplotype analysis revealed that the laba1 allele originated in the japonica subspecies and moved into the indica gene pool via introgression, suggesting that humans selected for this locus in early rice domestication. Identification of LABA1 provides new insights into rice domestication and also sheds light on the molecular mechanism underlying awn development. © 2015 American Society of Plant Biologists. All rights reserved.

  19. LABA1, a Domestication Gene Associated with Long, Barbed Awns in Wild Rice[OPEN

    Science.gov (United States)

    Hua, Lei; Wang, Diane R.; Tan, Lubin; Fu, Yongcai; Liu, Fengxia; Xiao, Langtao; Zhu, Zuofeng; Fu, Qiang; Sun, Xianyou; Gu, Ping; Cai, Hongwei; McCouch, Susan R.; Sun, Chuanqing

    2015-01-01

    Common wild rice (Oryza rufipogon), the wild relative of Asian cultivated rice (Oryza sativa), flaunts long, barbed awns, which are necessary for efficient propagation and dissemination of seeds. By contrast, O. sativa cultivars have been selected to be awnless or to harbor short, barbless awns, which facilitate seed processing and storage. The transition from long, barbed awns to short, barbless awns was a crucial event in rice domestication. Here, we show that the presence of long, barbed awns in wild rice is controlled by a major gene on chromosome 4, LONG AND BARBED AWN1 (LABA1), which encodes a cytokinin-activating enzyme. A frame-shift deletion in LABA1 of cultivated rice reduces the cytokinin concentration in awn primordia, disrupting barb formation and awn elongation. Sequencing analysis demonstrated low nucleotide diversity and a selective sweep encompassing an ∼800-kb region around the derived laba1 allele in cultivated rice. Haplotype analysis revealed that the laba1 allele originated in the japonica subspecies and moved into the indica gene pool via introgression, suggesting that humans selected for this locus in early rice domestication. Identification of LABA1 provides new insights into rice domestication and also sheds light on the molecular mechanism underlying awn development. PMID:26082172

  20. Engineering the lodging resistance mechanism of post-Green Revolution rice to meet future demands.

    Science.gov (United States)

    Hirano, Ko; Ordonio, Reynante Lacsamana; Matsuoka, Makoto

    2017-01-01

    Traditional breeding for high-yielding rice has been dependent on the widespread cultivation of gibberellin (GA)-deficient semi-dwarf varieties. Dwarfism lowers the "center of gravity" of the plant body, which increases resistance against lodging and enables plants to support high grain yield. Although this approach was successful in latter half of the 20th century in rice and wheat breeding, this may no longer be enough to sustain rice with even higher yields. This is because relying solely on the semi-dwarf trait is subject to certain limitations, making it necessary to use other important traits to reinforce it. In this review, we present an alternative approach to increase lodging resistance by improving the quality of the culm by identifying genes related to culm quality and introducing these genes into high-yielding rice cultivars through molecular breeding technique.

  1. The role of tolerant genotypes and plant nutrients in the management of acid soil infertility in upland rice

    International Nuclear Information System (INIS)

    Sahrawat, K.L.; Jones, M.P.; Diatta, S.

    2000-01-01

    As in other parts of the humid tropics, acid-related problems are the major constraint to crop production on low-activity clay soils in the humid and sub-humid zones of West Africa. The upland ecosystem of West Africa is very important to rice production. About 70% of upland rice is grown in the humid zone of the sub-region. To increase and stabilize rice productivity of the acid uplands at reasonable levels, a strategy is needed that integrates the use of tolerant cultivars with soil and plant-nutrient management. Research conducted on Alfisols and Ultisols of the humid-forest and savannah zones in West Africa showed that upland rice is a robust crop, possessing a wide range of tolerance to acid-soil conditions. Recent research at WARDA showed also that acid-soil tolerance can be enhanced through interspecific Oryza sativa x O. glaberrima progenies, which not only possess increased tolerance of acid-soil conditions, but also have superior overall adaptability to diverse upland environments in the sub-region. Our research on the diagnosis of acid-soil infertility problems on the Ultisols and Alfisols of the humid savannah and forest zones indicates that P deficiency is the most important nutrient disorder for upland rice. In the forest zone, response to N depended on the application of P. In the savannah and forest-savannah transition zones, N deficiency was more important than P deficiency. Among other plant nutrients, the application of Ca and Mg (as plant nutrients) did not appear initially to improve the performance of acid-tolerant upland rice cultivars. The results from a long-term study on an Ultisol with four acid-tolerant rice cultivars, revealed that they differed in agronomic and physiological P efficiencies, and the efficiencies were higher at lower rates of P. The amounts of total P removed in three successive crops were similar for all four cultivars although P-harvest index was 10 to 12% higher in the P-efficient than the inefficient cultivars. The

  2. Carambola Cultivar, Fruit Ripeness, and Damage by Conspecific Larvae Influence the Host-Related Behaviors of Anastrepha obliqua (Diptera: Tephritidae).

    Science.gov (United States)

    López-Ley, Jorge Ulises; Toledo, Jorge; Malo, Edi A; Gomez, Jaime; Santiesteban, Antonio; Rojas, Julio C

    2016-02-01

    In this study, we investigated the influence of cultivar type, fruit ripeness, and damage by conspecific larvae on the attraction of Anastrepha obliqua (Macquart) (Diptera: Tephritidae) to and oviposition on carambola fruit (Averroha carambola L.). The attraction of both sexes of A. obliqua to fruit of different quality was evaluated through cage experiments in the field, and the oviposition preferences of mated females were examined in laboratory tests. Both sexes, mated or virgin, were more attracted to the "Maha" fruit than to the "Golden Star" fruit, and the females oviposited more frequently on the Maha cultivar than the Golden Star cultivar. Both sexes were more attracted to ripe and half-ripe Maha fruits than to mature green fruit, and although females did not show a preference for ovipositing on half-ripe or ripe fruits, they did not oviposit on mature green fruits. Males did not show a preference for the volatiles from uninfested, artificially damaged, or infested Maha fruits, but females were more attracted to uninfested fruits than to artificially damaged and infested Maha fruits. Furthermore, females preferred to oviposit on uninfested fruits compared with artificially damaged fruit, and they did not oviposit on infested fruits. © The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  3. Chloroplast DNA polymorphism and evolutional relationships between Asian cultivated rice (Oryza sativa) and its wild relatives (O. rufipogon).

    Science.gov (United States)

    Li, W J; Zhang, B; Huang, G W; Kang, G P; Liang, M Z; Chen, L B

    2012-12-17

    We analyzed chloroplast DNA (cpDNA) polymorphism and phylogenic relationships between 6 typical indica rice, 4 japonica rice, 8 javanica rice, and 12 Asian common wild rice (Oryza rufipogon) strains collected from different latitudes in China by comparing polymorphism at 9 highly variable regions. One hundred and forty-four polymorphic bases were detected. The O. rufipogon samples had 117 polymorphic bases, showing rich genetic diversity. One hundred and thirty-one bases at 13 sites were identified with indica/japonica characteristics; they showed differences between the indica and japonica subspecies at these sites. The javanica strains and japonica shared similar bases at these 131 polymorphic sites, suggesting that javanica is closely related to japonica. On the basis of length analyses of the open reading frame (ORF)100 and (ORF)29-tRNA-Cys(GCA) (TrnC(GCA)) fragments, the O. rufipogon strains were classified into indica/japonica subgroups, which was consistent with the results of the phylogenic tree assay based on concatenated datasets. These results indicated that differences in indica and japonica also exist in the cpDNA genome of the O. rufipogon strains. However, these differences demonstrated a certain degree of primitiveness and incompleteness, as an O. rufipogon line may show different indica/ japonica attributes at different sites. Consequently, O. rufipogon cannot be simply classified into the indica/japonica types as O. sativa. Our data support the hypothesis that Asian cultivated rice, O. indica and O. japonica, separately evolved from Asian common wild rice (O. rufipogon) strains, which have different indica-japonica differentiation trends.

  4. Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice.

    Science.gov (United States)

    Kim, HyunJung; Jung, Janelle; Singh, Namrata; Greenberg, Anthony; Doyle, Jeff J; Tyagi, Wricha; Chung, Jong-Wook; Kimball, Jennifer; Hamilton, Ruaraidh Sackville; McCouch, Susan R

    2016-12-01

    Understanding population structure of the wild progenitor of Asian cultivated rice (O. sativa), the Oryza rufipogon species complex (ORSC), is of interest to plant breeders and contributes to our understanding of rice domestication. A collection of 286 diverse ORSC accessions was evaluated for nuclear variation using genotyping-by-sequencing (113,739 SNPs) and for chloroplast variation using Sanger sequencing (25 polymorphic sites). Six wild subpopulations were identified, with 25 % of accessions classified as admixed. Three of the wild groups were genetically and geographically closely related to the O. sativa subpopulations, indica, aus and japonica, and carried O. sativa introgressions; the other three wild groups were genetically divergent, had unique chloroplast haplotypes, and were located at the geographical extremes of the species range. The genetic subpopulations were significantly correlated (r 2  = 0.562) with traditional species designations, O. rufipogon (perennial) and O. nivara (annual), differentiated based on morphology and life history. A wild diversity panel of 95 purified (inbred) accessions was developed for future genetic studies. Our results suggest that the cultivated aus subpopulation is most closely related to an annual wild relative, japonica to a perennial wild relative, and indica to an admixed population of diverse annual and perennial wild ancestors. Gene flow between ORSC and O. sativa is common in regions where rice is cultivated, threatening the identity and diversity of wild ORSC populations. The three geographically isolated ORSC populations harbor variation rarely seen in cultivated rice and provide a unique window into the genetic composition of ancient rice subpopulations.

  5. Plant root transcriptome profiling reveals a strain-dependent response during Azospirillum-rice cooperation

    Directory of Open Access Journals (Sweden)

    Benoît eDrogue

    2014-11-01

    Full Text Available Cooperation involving Plant Growth-Promoting Rhizobacteria results in improvements of plant growth and health. While pathogenic and symbiotic interactions are known to induce transcriptional changes for genes related to plant defence and development, little is known about the impact of phytostimulating rhizobacteria on plant gene expression. This study aims at identifying genes significantly regulated in rice roots upon Azospirillum inoculation, considering possible favored interaction between a strain and its original host cultivar. Genome-wide analyses of Oryza sativa japonica cultivars Cigalon and Nipponbare were performed, by using microarrays, seven days post inoculation with A. lipoferum 4B (isolated from Cigalon or Azospirillum sp. B510 (isolated from Nipponbare and compared to the respective non-inoculated condition. A total of 7,384 genes were significantly regulated, which represent about 16 % of total rice genes. A set of 34 genes is regulated by both Azospirillum strains in both cultivars, including a gene orthologous to PR10 of Brachypodium, and these could represent plant markers of Azospirillum-rice interactions. The results highlight a strain-dependent response of rice, with 83 % of the differentially expressed genes being classified as combination-specific. Whatever the combination, most of the differentially expressed genes are involved in primary metabolism, transport, regulation of transcription and protein fate. When considering genes involved in response to stress and plant defence, it appears that strain B510, a strain displaying endophytic properties, leads to the repression of a wider set of genes than strain 4B. Individual genotypic variations could be the most important driving force of rice roots gene expression upon Azospirillum inoculation. Strain-dependent transcriptional changes observed for genes related to auxin and ethylene signalling highlight the complexity of hormone signalling networks in the Azospirillum-rice

  6. A study on compatibilities on transgenic herbicide-resistant rice with wild relatives by using autoradiography of 32P labeled pollen

    International Nuclear Information System (INIS)

    Liu Linli; Qiang Sheng; Song Xiaoling

    2004-01-01

    To evaluate the possibility of gene flow through observation of the sexual compatibilities of transgenic herbicide-resistant rice with wild relative by using isotope tracer to label pollen grains, the experiments on radioactivity, tracer mode, autoradiography film and time were conducted. Better procedure was to label pollen grains of transgenic herbicide-resistant rice by culturing the rice in a 1.48 x 10 7 Bq/L 32 P nutrient liquid, to pollinate the labelled pollen grains on the stigmas of barnyard grass (Echinochloa crusgalli var. mitis), Oryza officinalis and weedy rice (Oryza sativa) respectively, and then 3 hour later, to fix these pistils on a piece of glass plate and cover the film of Luck 400 on it for autoradiography. The autoradiographs show that the tube of the transgenic rice's pollens cannot penetrate the stigma of barnyard grass and arrive at embryo sacs to fertilize, so that the possibility of gene flow between them is the lowest; the tube of the labelled pollens can penetrate the stigma of O officinalis and enter the style but can not arrive at embryo sacs to fertilize, so the possibility of gene flow between them is relatively low; and the pollen tube can arrive at the embryo sacs of the weedy rice, so that the possibility of gene flow is relatively high from transgenic herbicide-resistant rice to weedy rice. (authors)

  7. The Complete Chloroplast Genome of Wild Rice (Oryza minuta) and Its Comparison to Related Species.

    Science.gov (United States)

    Asaf, Sajjad; Waqas, Muhammad; Khan, Abdul L; Khan, Muhammad A; Kang, Sang-Mo; Imran, Qari M; Shahzad, Raheem; Bilal, Saqib; Yun, Byung-Wook; Lee, In-Jung

    2017-01-01

    Oryza minuta , a tetraploid wild relative of cultivated rice (family Poaceae), possesses a BBCC genome and contains genes that confer resistance to bacterial blight (BB) and white-backed (WBPH) and brown (BPH) plant hoppers. Based on the importance of this wild species, this study aimed to understand the phylogenetic relationships of O. minuta with other Oryza species through an in-depth analysis of the composition and diversity of the chloroplast (cp) genome. The analysis revealed a cp genome size of 135,094 bp with a typical quadripartite structure and consisting of a pair of inverted repeats separated by small and large single copies, 139 representative genes, and 419 randomly distributed microsatellites. The genomic organization, gene order, GC content and codon usage are similar to those of typical angiosperm cp genomes. Approximately 30 forward, 28 tandem and 20 palindromic repeats were detected in the O . minuta cp genome. Comparison of the complete O. minuta cp genome with another eleven Oryza species showed a high degree of sequence similarity and relatively high divergence of intergenic spacers. Phylogenetic analyses were conducted based on the complete genome sequence, 65 shared genes and matK gene showed same topologies and O. minuta forms a single clade with parental O. punctata . Thus, the complete O . minuta cp genome provides interesting insights and valuable information that can be used to identify related species and reconstruct its phylogeny.

  8. Transcriptional changes of rice in response to rice black-streaked dwarf virus.

    Science.gov (United States)

    Ahmed, Mohamed M S; Ji, Wen; Wang, Muyue; Bian, Shiquan; Xu, Meng; Wang, Weiyun; Zhang, Jiangxiang; Xu, Zhihao; Yu, Meimei; Liu, Qiaoquan; Zhang, Changquan; Zhang, Honggen; Tang, Shuzhu; Gu, Minghong; Yu, Hengxiu

    2017-09-10

    Rice black-streaked dwarf virus (RBSDV), a member of the genus Fijivirus in the family Reoviridae, causes significant economic losses in rice production in China and many other Asian countries. Although a great deal of effort has been made to elucidate the interactions among the virus, insect vectors, host and environmental conditions, few RBSDV proteins involved in pathogenesis have been identified, and the biological basis of disease development in rice remains largely unknown. Transcriptomic information associated with the disease development in rice would be helpful to unravel the biological mechanism. To determine how the rice transcriptome changes in response to RBSDV infection, we carried out RNA-Seq to perform a genome-wide gene expression analysis of a susceptible rice cultivar KTWYJ3. The transcriptomes of RBSDV-infected samples were compared to those of RBSDV-free (healthy) at two time points (time points are represented by group I and II). The results derived from the differential expression analysis in RBSDV-infected libraries vs. healthy ones in group I revealed that 102 out of a total of 281 significant differentially expressed genes (DEGs) were up-regulated and 179 DEGs were down-regulated. Of the 2592 identified DEGs in group II, 1588 DEGs were up-regulated and 1004 DEGs were down-regulated. A total of 66 DEGs were commonly identified in both groups. Of these 66 DEGs, expression patterns for 36 DEGs were similar in both groups. Our analysis demonstrated that some genes related to disease defense and stress resistance were up-regulated while genes associated with chloroplast were down-regulated in response to RBSDV infection. In addition, some genes associated with plant-height were differentially expressed. This result indicates those genes might be involved in dwarf symptoms caused by RBSDV. Taken together, our results provide a genome-wide transcriptome analysis for rice plants in response to RBSDV infection which may contribute to the

  9. Comparative proteomics and protein profile related to phenolic compounds and antioxidant activity in germinated Oryza sativa 'KDML105' and Thai brown rice 'Mali Daeng' for better nutritional value.

    Science.gov (United States)

    Maksup, Sarunyaporn; Pongpakpian, Sarintip; Roytrakul, Sittiruk; Cha-Um, Suriyan; Supaibulwatana, Kanyaratt

    2018-01-01

    Brown rice (BR) and germinated brown rice (GBR) are considered as prime sources of carbohydrate and bioactive compounds for more than half of the populations worldwide. Several studies have reported on the proteomics of BR and GBR; however, the proteomic profiles related to the synthesis of bioactive compounds are less well documented. In the present study, BR and GBR were used in a comparative analysis of the proteomic and bioactive compound profiles for two famous Thai rice varieties: Khao Dawk Mali 105 (KDML) and Mali Daeng (MD). The proteomes of KDML and MD revealed differences in the expression patterns of proteins after germination. Total phenolic compound content, anthocyanin contents and antioxidant activity of red rice MD was approximately 2.6-, 2.2- and 9.2-fold higher, respectively, compared to that of the white rice KDML. Moreover, GBR of MD showed higher total anthocyanin content and greater antioxidant activity, which is consistent with the increase expression of several proteins involved in the biosynthesis of phenolic compounds and protection against oxidative stress. Red rice MD exhibits higher nutrient values compared to white rice KDML and the appropriate germination of brown rice could represent a method for improving health-related benefits. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

  10. Pathogenicity of Heterodera daverti, H. zeae, and Meloidogyne incognita on rice

    Science.gov (United States)

    The reactions of five rice cultivars to the cyst nematodes Heterodera daverti and H. zeae and the root-knot nematode Meloidogyne incognita were determined in the greenhouse. The results showed that both H. daverti and H. zeae infected and reproduced successfully on some of the tested rice cultivars....

  11. a study on light trap catches of some rice pests in relation

    African Journals Online (AJOL)

    Preferred Customer

    2 Crop Research Station, Masodha, N.D.U.A. and Technology, Faizabad 224133, India. ABSTRACT: The effect of meteorological factors on the population build up of green leafhopper ... green leafhopper and rice gundhi bug, besides evening ...

  12. Evaluation of strategies for utilizing rice husk based on life cycle cost analysis in relation to Greenhouse Gas emissions in An Giang province, Vietnam

    International Nuclear Information System (INIS)

    Mai Thao, Pham Thi; Kurisu, Kiyo H.; Hanaki, Keisuke

    2012-01-01

    To evaluate the cost effectiveness of rice husk utilization, a life cycle cost analysis was conducted for 18 scenarios developed in a previous study. The allocation of fuels other than rice husks was decided on the basis of current demand for and supply of rice husks. The production of rice husk briquettes is also discussed as a means of circumventing problems arising from the bulk of the material. In the power generation scenarios, differences between two generating capacities (5 and 30 MW) were analyzed. Costs savings are possible by using rice husk to replace fossil fuels for cooking. With regard to power generation, operation on a 30-MW scale by combustion of all available rice husk was identified as the most economically efficient scenario, followed by small-scale gasification scenarios (5 MW). The combustion of rice husk briquettes for power generation appeared to be less cost-efficient than direct combustion, whereas large-scale gasification scenarios and pyrolysis scenarios give rise to increases in cost compared with the baseline. When both GHG abatement and costs are taken into consideration, suitable scenarios that are practicable involve the use of rice husk for cooking, for large-scale combustion power generation, and for small-scale gasification. -- Highlights: ► Life cycle cost analysis was conducted to evaluate potentiality of rice husk use. ► The scenarios used rice husk for cooking showed a better cost effectiveness. ► While large-scale gasification and pyrolysis is less. ► In relation to GHG emission, the win–win scenarios are to use rice husk for cooking. ► Large-scale combustion and small-scale gasification also showed practical scenarios.

  13. Identification and functional analysis of flowering related microRNAs in common wild rice (Oryza rufipogon Griff.).

    Science.gov (United States)

    Chen, Zongxiang; Li, Fuli; Yang, Songnan; Dong, Yibo; Yuan, Qianhua; Wang, Feng; Li, Weimin; Jiang, Ying; Jia, Shirong; Pei, Xinwu

    2013-01-01

    MicroRNAs (miRNAs) is a class of non-coding RNAs involved in post- transcriptional control of gene expression, via degradation and/or translational inhibition. Six-hundred sixty-one rice miRNAs are known that are important in plant development. However, flowering-related miRNAs have not been characterized in Oryza rufipogon Griff. It was approved by supervision department of Guangdong wild rice protection. We analyzed flowering-related miRNAs in O. rufipogon using high-throughput sequencing (deep sequencing) to understand the changes that occurred during rice domestication, and to elucidate their functions in flowering. Three O. rufipogon sRNA libraries, two vegetative stage (CWR-V1 and CWR-V2) and one flowering stage (CWR-F2) were sequenced using Illumina deep sequencing. A total of 20,156,098, 21,531,511 and 20,995,942 high quality sRNA reads were obtained from CWR-V1, CWR-V2 and CWR-F2, respectively, of which 3,448,185, 4,265,048 and 2,833,527 reads matched known miRNAs. We identified 512 known rice miRNAs in 214 miRNA families and predicted 290 new miRNAs. Targeted functional annotation, GO and KEGG pathway analyses predicted that 187 miRNAs regulate expression of flowering-related genes. Differential expression analysis of flowering-related miRNAs showed that: expression of 95 miRNAs varied significantly between the libraries, 66 are flowering-related miRNAs, such as oru-miR97, oru-miR117, oru-miR135, oru-miR137, et al. 17 are early-flowering -related miRNAs, including osa-miR160f, osa-miR164d, osa-miR167d, osa-miR169a, osa-miR172b, oru-miR4, et al., induced during the floral transition. Real-time PCR revealed the same expression patterns as deep sequencing. miRNAs targets were confirmed for cleavage by 5'-RACE in vivo, and were negatively regulated by miRNAs. This is the first investigation of flowering miRNAs in wild rice. The result indicates that variation in miRNAs occurred during rice domestication and lays a foundation for further study of phase change

  14. Identification and functional analysis of flowering related microRNAs in common wild rice (Oryza rufipogon Griff..

    Directory of Open Access Journals (Sweden)

    Zongxiang Chen

    Full Text Available BACKGROUND: MicroRNAs (miRNAs is a class of non-coding RNAs involved in post- transcriptional control of gene expression, via degradation and/or translational inhibition. Six-hundred sixty-one rice miRNAs are known that are important in plant development. However, flowering-related miRNAs have not been characterized in Oryza rufipogon Griff. It was approved by supervision department of Guangdong wild rice protection. We analyzed flowering-related miRNAs in O. rufipogon using high-throughput sequencing (deep sequencing to understand the changes that occurred during rice domestication, and to elucidate their functions in flowering. RESULTS: Three O. rufipogon sRNA libraries, two vegetative stage (CWR-V1 and CWR-V2 and one flowering stage (CWR-F2 were sequenced using Illumina deep sequencing. A total of 20,156,098, 21,531,511 and 20,995,942 high quality sRNA reads were obtained from CWR-V1, CWR-V2 and CWR-F2, respectively, of which 3,448,185, 4,265,048 and 2,833,527 reads matched known miRNAs. We identified 512 known rice miRNAs in 214 miRNA families and predicted 290 new miRNAs. Targeted functional annotation, GO and KEGG pathway analyses predicted that 187 miRNAs regulate expression of flowering-related genes. Differential expression analysis of flowering-related miRNAs showed that: expression of 95 miRNAs varied significantly between the libraries, 66 are flowering-related miRNAs, such as oru-miR97, oru-miR117, oru-miR135, oru-miR137, et al. 17 are early-flowering -related miRNAs, including osa-miR160f, osa-miR164d, osa-miR167d, osa-miR169a, osa-miR172b, oru-miR4, et al., induced during the floral transition. Real-time PCR revealed the same expression patterns as deep sequencing. miRNAs targets were confirmed for cleavage by 5'-RACE in vivo, and were negatively regulated by miRNAs. CONCLUSIONS: This is the first investigation of flowering miRNAs in wild rice. The result indicates that variation in miRNAs occurred during rice domestication and

  15. Technological, physicochemical and sensory changes of upland rice in soaking step of the parboiling process

    Directory of Open Access Journals (Sweden)

    Flávia de Araújo Fonseca

    2014-09-01

    Full Text Available The aim of this study was to evaluate the effect of combinations of soaking temperature and time during the parboiling on the technological, physicochemical and sensory quality of two upland rice cultivars. The milling degree for BRS Primavera and BRS Sertaneja cultivars ranged from 7.11 to 8.89 g100 g-1 and 7.62 to 8.91 g 100 g-1and the head yield from 63.77 to 69.26 g 100 g-1 and from 73.22 to 75.40 g 100 g-1, respectively. The ash content for parboiled BRS Sertaneja increased up to 68%; regarding protein, the content increased up to 10% and for lipids, the values increased up to 86%, approximately, after processing. The higher the soaking temperature, the lower the milling degree and head yield. The parboiled rice BRS Primavera achieved higher contents of ash and lipid in relation to non-parboiled milled rice, while the BRS Sertaneja obtained higher ash, protein, lipid, and crude fiber contents. Parboiled rice samples had higher yield and cooking time than milled rice samples. The condition of soaking at 65°C for 60 min. and 60oC for 112 min. was sufficient for the acceptance of all sensory attributes evaluated in BRS Primavera, and 65oC for 420 min. in BRS Sertaneja.

  16. Authenticity of rice (Oryza sativa L.) geographical origin based on analysis of C, N, O and S stable isotope ratios: a preliminary case report in Korea, China and Philippine.

    Science.gov (United States)

    Chung, Ill-Min; Kim, Jae-Kwang; Prabakaran, Mayakrishnan; Yang, Jin-Hee; Kim, Seung-Hyun

    2016-05-01

    Although rice (Oryza sativa L.) is the third largest food crop, relatively fewer studies have been reported on rice geographical origin based on light element isotope ratios in comparison with other foods such as wine, beef, juice, oil and milk. Therefore this study tries to discriminate the geographical origin of the same rice cultivars grown in different Asian countries using the analysis of C, N, O and S stable isotope ratios and chemometrics. The δ(15) NAIR , δ(18) OVSMOW and δ(34) SVCDT values of brown rice were more markedly influenced by geographical origin than was the δ(13) CVPDB value. In particular, the combination of δ(18) OVSMOW and δ(34) SVCDT more efficiently discriminated rice geographical origin than did the remaining combinations. Principal component analysis (PCA) revealed a clear discrimination between different rice geographical origins but not between rice genotypes. In particular, the first components of PCA discriminated rice cultivated in the Philippines from rice cultivated in China and Korea. The present findings suggest that analysis of the light element isotope composition combined with chemometrics can be potentially applicable to discriminate rice geographical origin and also may provide a valuable insight into the control of improper or fraudulent labeling regarding the geographical origin of rice worldwide. © 2015 Society of Chemical Industry. © 2015 Society of Chemical Industry.

  17. Comparative Study of Phenolic Profile, Antioxidant Capacity, and Color-composition Relation of Roselle Cultivars with Contrasting Pigmentation.

    Science.gov (United States)

    Camelo-Méndez, Gustavo A; Jara-Palacios, M José; Escudero-Gilete, M Luisa; Gordillo, Belén; Hernanz, Dolores; Paredes-López, Octavio; Vanegas-Espinoza, Pablo E; Del Villar-Martínez, Alma A; Heredia, Francisco J

    2016-03-01

    Roselle is a plant that accumulates anthocyanins significantly, hence its importance as food coloring and as a source of antioxidant compounds for human health. This study was aimed to determine phenolic composition and antioxidant capacity of methanolic extracts, and beverages obtained from native roselle cultivars in Mexico (Negra, Sudan, Rosa and Blanca) with different degrees of pigmentation, and to establish the color-composition relationship. Chromatographic methods were used to determine phenolic compounds: flavanols, flavonols, benzoic, hibiscus and phenolic acids as well as two main anthocyanins (cyanidin 3-sambubioside and delphinidin 3-sambubioside). The antioxidant capacity was evaluated by ABTS and FRAP assays. Tristimulus colorimetry showed to be a useful technique to determine the color-composition relationship, leading to equations that allowed to predict anthocyanin content of roselle (R > 0.84). Also, a stepwise linear discriminant analysis (SLDA) was developed in order to classify roselle cultivars. The obtained mathematical model could be an important tool to be used in colorimetric characterization of functional compounds used in food processing.

  18. Changes in Activities of Glutamine Synthetase during Grain Filling and Their Relation to Rice Quality

    Directory of Open Access Journals (Sweden)

    Zheng-xun JIN

    2007-09-01

    Full Text Available Four japonica rice varieties differed in cooking and eating qualities were used in a pot experiment to study the relationship between the activities of glutamine synthetase during grain filling and rice quality. The activities of glutamine synthetase gradually increased and then declined as a single peak curve in the course of grain filling. The 15th day after heading was a turning point, before which the enzymatic activities in the inferior rice varieties with high protein content were higher than those in the superior rice varietie with low protein content, and after which it was converse. The activity of glutamine synthetase in grain was correlated with the taste meter value, peak viscosity and breakdown negatively at the early stage of grain filling whereas positively at the middle and late stages. Moreover, it was correlated with the protein content of rice grain and setback positively at the early stage and negatively at the middle and late stages. The correlation degree varied with the course of grain filling. From 15 days to 20 days after heading was a critical stage, in which the direction of correlation between the activity of glutamine synthetase and taste meter value and RVA properties of rice changed.

  19. Fate of N and relative efficiency of 15N-labeled organic materials applied to transplanted rice in northern Kyushu region of Japan

    International Nuclear Information System (INIS)

    Nishida, Mizuhiko; Tsuchiya, Kazunari; Yamamuro, Shigekazu

    2004-01-01

    Seven kinds of 15 N-labeled organic materials were applied to transplanted rice to investigate their N fate and relative efficiency in the northern Kyushu region of Japan. The 15 N-labeled organic materials examined in a micro-plot experiment were cattle manure compost, poultry manure compost, swine feces, rice straw compost, rice bran, rice straw, and wheat straw. Regarding swine feces, rice bran, and wheat straw, the direct evaluation of their N fate in paddy fields using 15 N organic materials has not been reported. A significant difference in the N fate in response to the type of organic materials was observed in the uptake rate by rice plants. The uptake rate at the maturity stage was significantly higher in poultry manure (29%), swine feces (25%), and rice bran (26%) than for the other organic materials (6-13%). Cattle manure compost showed the lowest value, namely 6-7%. Using the uptake rate of ( 15 NH 4 ) 2 SO 4 observed earlier, the relative efficiency of organ nic materials (relative uptake rate of organic material N to chemical fertilizer N) was calculated as the index of the organic material N efficiency. These relative efficiencies of organic materials derived from animal wastes were 16-19, 81, 72, and 71% for cattle manure compost, poultry manure compost, poultry manure compost without inherent NH 4 -H, and swine feces, respectively, and were similar to those estimated by indirect way. The relative efficiencies of organic materials derived from plant residues were 25-31, 73, 33 and 34% for rice straw compost, rice bran, rice straw, and wheat straw, respectively. The N uptake from the organic materials (OM-N uptake) in swine feces and cattle manure compost continued throughout the rice growth period, whereas the OM-N uptake of the other organic materials declined remarkably after 54 DAT. No significant difference was observed in the residual rate and the loss rate among the organic materials. However, some tendencies that might be related to the

  20. Characteristics of bread prepared from wheat flours blended with various kinds of newly developed rice flours.

    Science.gov (United States)

    Nakamura, S; Suzuki, K; Ohtsubo, K

    2009-04-01

    Characteristics of the bread prepared from wheat flour blended with the flour of various kinds of newly developed rice cultivars were investigated. Qualities of the bread made from wheat flour blended with rice flour have been reported to be inferior to those from 100% wheat flour bread. To improve its qualities, we searched for the new-characteristic rice flours among the various kinds of newly developed rice cultivars to blend with the wheat flour for the bread preparation. The most suitable new characteristic rices are combination of purple waxy rice, high-amylose rice, and sugary rice. Specific volume of the bread from the combination of wheat and these 3 kinds of rice flours showed higher specific volume (3.93) compared with the traditional wheat/rice bread (3.58). We adopted the novel method, continuous progressive compression test, to measure the physical properties of the dough and the bread in addition to the sensory evaluation. As a result of the selection of the most suitable rice cultivars and blending ratio with the wheat flour, we could develop the novel wheat/rice bread, of which loaf volume, physical properties, and tastes are acceptable and resistant to firming on even 4 d after the bread preparation. To increase the ratio of rice to wheat, we tried to add a part of rice as cooked rice grains. The specific volume and qualities of the bread were maintained well although the rice content of total flour increased from 30% to 40%.

  1. Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions.

    Science.gov (United States)

    Uga, Yusaku; Sugimoto, Kazuhiko; Ogawa, Satoshi; Rane, Jagadish; Ishitani, Manabu; Hara, Naho; Kitomi, Yuka; Inukai, Yoshiaki; Ono, Kazuko; Kanno, Noriko; Inoue, Haruhiko; Takehisa, Hinako; Motoyama, Ritsuko; Nagamura, Yoshiaki; Wu, Jianzhong; Matsumoto, Takashi; Takai, Toshiyuki; Okuno, Kazutoshi; Yano, Masahiro

    2013-09-01

    The genetic improvement of drought resistance is essential for stable and adequate crop production in drought-prone areas. Here we demonstrate that alteration of root system architecture improves drought avoidance through the cloning and characterization of DEEPER ROOTING 1 (DRO1), a rice quantitative trait locus controlling root growth angle. DRO1 is negatively regulated by auxin and is involved in cell elongation in the root tip that causes asymmetric root growth and downward bending of the root in response to gravity. Higher expression of DRO1 increases the root growth angle, whereby roots grow in a more downward direction. Introducing DRO1 into a shallow-rooting rice cultivar by backcrossing enabled the resulting line to avoid drought by increasing deep rooting, which maintained high yield performance under drought conditions relative to the recipient cultivar. Our experiments suggest that control of root system architecture will contribute to drought avoidance in crops.

  2. Exogenously applied plant growth regulators enhance the morpho-physiological growth and yield of rice under high temperature

    Directory of Open Access Journals (Sweden)

    Shah Fahad

    2016-08-01

    Full Text Available A two-year experiment was conducted to ascertain the effects of exogenously applied plant growth regulators (PGR on rice growth and yield attributes under high day (HDT and high night temperature (HNT. Two rice cultivars (IR-64 and Huanghuazhan were subjected to temperature treatments in controlled growth chambers and four different combinations of ascorbic acid (Vc, alpha-tocopherol (Ve, brassinosteroids (Br, methyl jasmonates (MeJA and triazoles (Tr were applied. High temperature severely affected rice morphology, and also reduced leaf area, above- and below-ground biomass, photosynthesis, and water use efficiency, while increased the leaf water potential of both rice cultivars. Grain yield and its related attributes except number of panicles, were reduced under high temperature. The HDT posed more negative effects on rice physiological attributes, while HNT was more detrimental for grain formation and yield. The Huanghuazhan performed better than IR-64 under high temperature stress with better growth and higher grain yield. Exogenous application of PGRs was helpful in alleviating the adverse effects of high temperature. Among PGR combinations, the Vc+Ve+MejA+Br was the most effective treatment for both cultivars under high temperature stress. The highest grain production by Vc+Ve+MejA+Br treated plants was due to enhanced photosynthesis, spikelet fertility and grain filling, which compensated the adversities of high temperature stress. Taken together, these results will be of worth for further understanding the adaptation and survival mechanisms of rice to high temperature and will assist in developing heat-resistant rice germplasm in future.

  3. Crop response of aerobic rice and winter wheat to nitrogen, phosphorus and potassium in a double cropping system

    NARCIS (Netherlands)

    Dai, X.Q.; Zhang, H.Y.; Spiertz, J.H.J.; Yu, J.; Xie, G.H.; Bouman, B.A.M.

    2010-01-01

    In the aerobic rice system, adapted rice cultivars are grown in non-flooded moist soil. Aerobic rice may be suitable for double cropping with winter wheat in the Huai River Basin, northern China plain. Field experiments in 2005 and 2006 were conducted to study the response of aerobic rice and winter

  4. physico-chemical and grain cooking characteristics of selected rice

    African Journals Online (AJOL)

    Mgina

    Sokoine University of Agriculture, Department of Food Science and Technology,. P.O. Box 3006 ... improve the cooking quality parameters, improve production of the local rice cultivars and increase the ... Sample collection and preparation.

  5. Determination of genetic variability of Asian rice (Oryza sativa L ...

    African Journals Online (AJOL)

    PRECIOUS

    2009-11-02

    Nov 2, 2009 ... diversity and relationship among thirty-five Asian cultivars of rice including 19 aromatic, 13 non- ... are promising and effective tools for measuring genetic .... efficients were employed by using Simqual sub-program in similarity.

  6. Use of gamma-rays sensitivity for discrimination of upland cultivars of groups Indican and Japonica

    International Nuclear Information System (INIS)

    Rodrigues, Luis Roberto Franco

    2003-01-01

    Sixty-five upland rice cultivars (Oryza sativa L.) were evaluated in relation to gamma-ray sensitivity. Seeds were subjected to seven doses of gamma-radiation and sown in wooden boxes in randomised complete block design with three replications. The experiment was conducted in greenhouse during the year of 1992. Physiological effects caused by radiation in the M 1 generation, were evaluated. The results showed that the sensitivity to the radiation at doses 300 and 360 Gy was useful for distinguishing Indican and Japonica groups. (author)

  7. Short communication. A spontaneous mutant of L-202 rice

    Energy Technology Data Exchange (ETDEWEB)

    Garcia-Yzaguire, A.; Padrones, T.

    2009-07-01

    A new spontaneous phenotype of the rice cultivar L-202 was found. Mendelian analysis indicates that it is a monogenic, recessive mutant. Its distinguishing features are: dark blue-green colour, short and narrow leaves, high tillering and relatively short height. The objectives of this study were: to characterize it, to determine if it is heritable and if so, its genetic basis. Its distinguishing features are: dark blue-green colour, short and narrow leaves, high tillering and relatively short height. Selfing the new phenotype resulted in a uniform progeny, with the traits of the parent plant (wild type). Crossing the new phenotype with the normal L-202 cultivar resulted in a uniform F1 hybrid generation, with the wild type. The F2 generation showed a mendelian segregation which did not depart significantly from three normal plants : one new phenotype. It is concluded that it is a monogenic, recessive mutant. (Author) 3 refs.

  8. A walk on the wild side: Oryza species as source for rice abiotic stress tolerance.

    Science.gov (United States)

    Menguer, Paloma Koprovski; Sperotto, Raul Antonio; Ricachenevsky, Felipe Klein

    2017-01-01

    Oryza sativa, the common cultivated rice, is one of the most important crops for human consumption, but production is increasingly threatened by abiotic stresses. Although many efforts have resulted in breeding rice cultivars that are relatively tolerant to their local environments, climate changes and population increase are expected to soon call for new, fast generation of stress tolerant rice germplasm, and current within-species rice diversity might not be enough to overcome such needs. The Oryza genus contains other 23 wild species, with only Oryza glaberrima being also domesticated. Rice domestication was performed with a narrow genetic diversity, and the other Oryza species are a virtually untapped genetic resource for rice stress tolerance improvement. Here we review the origin of domesticated Oryza sativa from wild progenitors, the ecological and genomic diversity of the Oryza genus, and the stress tolerance variation observed for wild Oryza species, including the genetic basis underlying the tolerance mechanisms found. The summary provided here is important to indicate how we should move forward to unlock the full potential of these germplasms for rice improvement.

  9. Transcriptome profiling confirmed correlations between symptoms and transcriptional changes in RDV infected rice and revealed nucleolus as a possible target of RDV manipulation.

    Science.gov (United States)

    Yang, Liang; Du, Zhenguo; Gao, Feng; Wu, Kangcheng; Xie, Lianhui; Li, Yi; Wu, Zujian; Wu, Jianguo

    2014-05-06

    Rice dwarf virus (RDV) is the causal agent of rice dwarf disease, which limits rice production in many areas of south East Asia. Transcriptional changes of rice in response to RDV infection have been characterized by Shimizu et al. and Satoh et al.. Both studies found induction of defense related genes and correlations between transcriptional changes and symptom development in RDV-infected rice. However, the same rice cultivar, namely Nipponbare belonging to the Japonic subspecies of rice was used in both studies. Gene expression changes of the indica subspecies of rice, namely Oryza sativa L. ssp. indica cv Yixiang2292 that show moderate resistance to RDV, in response to RDV infection were characterized using an Affymetrix Rice Genome Array. Differentially expressed genes (DEGs) were classified according to their Gene Ontology (GO) annotation. The effects of transient expression of Pns11 in Nicotiana benthaminana on the expression of nucleolar genes were studied using real-time PCR (RT-PCR). 856 genes involved in defense or other physiological processes were identified to be DEGs, most of which showed up-regulation. Ribosome- and nucleolus related genes were significantly enriched in the DEGs. Representative genes related to nucleolar function exhibited altered expression in N. benthaminana plants transiently expressing Pns11 of RDV. Induction of defense related genes is common for rice infected with RDV. There is a co-relation between symptom severity and transcriptional alteration in RDV infected rice. Besides ribosome, RDV may also target nucleolus to manipulate the translation machinery of rice. Given the tight links between nucleolus and ribosome, it is intriguing to speculate that RDV may enhance expression of ribosomal genes by targeting nucleolus through Pns11.

  10. Variability of Phenolic and Volatile Compounds in Virgin Olive Oil from Leccino and Istarska Bjelica Cultivars in Relation to Their Fruit Mixtures

    Directory of Open Access Journals (Sweden)

    Olivera Koprivnjak

    2012-01-01

    Full Text Available Phenolic and volatile compounds are closely related to valuable gastronomic and nutritional properties, as well as oxidative stability of virgin olive oil. Since biochemical synthesis and transformation of these compounds during olive processing depend on the activity of endogenous enzymes, which are partially influenced by genetic factors, mixtures of different cultivars could have either a synergistic or antagonistic effect on phenolic and volatile compounds in the resulting oil. In this context, two specific cultivars from the Istrian peninsula, Leccino (L and Istarska bjelica (B, were selected. Two monovarietal fruit samples (L100 and B100 and four mixtures in the following mass ratios: L/B=80:20, L/B=60:40, L/B=40:60 and L/B=20:80 were prepared. The mass fraction of total phenols was determined colourimetrically, while C6 and C5 volatiles from lipoxygenase pathway were determined by headspace solid-phase microextraction-gas chromatography. Mass fraction of total phenols in the oil samples from fruit mixtures changed linearly from (199.5±7.2 in Leccino to (642.0±61.7 mg/kg in Istarska bjelica, in a strict correlation with fruit mass ratio of the two cultivars. Leccino monovarietal samples had statistically higher values (p≤0.05 of C6 aldehydes ((15.32±1.69 vs. (10.91±0.62 mg/kg and C6 alcohols ((2.96±0.98 vs. (0.17±0.05 mg/kg, but lower values of C5 compounds ((0.77±0.12 vs. (0.96±0.05 mg/kg compared to Istarska bjelica samples. Volatiles having a direct contribution to the oil aroma (odour activity value >1.0 were 1-penten-3-one (84–201, E-2-hexenal (26–42, hexanal (1.8–2.4 and Z-2-penten-1-ol (1.3–2.6. A significant synergistic effect was observed for C6 aldehydes in the case of L/B=40:60 fruit mixture. The addition of Istarska bjelica to Leccino fruits caused a significant antagonistic effect on C6 alcohols, but no significant deviations from the expected values were found in the case of C6 esters and C5 compounds

  11. Transgene Flow from Glufosinate-Resistant Rice to Improved and Weedy Rice in China

    Directory of Open Access Journals (Sweden)

    Yong-liang LU

    2014-09-01

    Full Text Available The development of transgenic rice with novel traits in China can increase rice productivity, but transgene flow to improved or weedy rice has become a major concern. We aimed to evaluate the potential maximum frequencies of transgene flow from glufosinate-resistant rice to improved rice cultivars and weedy rice. Treatments were arranged in randomized complete blocks with three replicates. Experiments were conducted between 2009 and 2010 at the Center for Environmental Safety Supervision and Inspection for Genetically Modified Plants, China National Rice Research Institute, Hangzhou, China. Glufosinate-resistant japonica rice 99-1 was the pollen donor. The pollen recipients were two inbred japonica rice (Chunjiang 016 and Xiushui 09, two inbred indica rice (Zhongzu 14 and Zhongzao 22, two indica hybrid rice (Zhongzheyou 1 and Guodao 1, and one weedy indica rice (Taizhou weedy rice. The offspring of recipients were planted in the field and sprayed with a commercial dose of glufosinate. Leaf tissues of survivors were analyzed by polymerase chain reaction to detect the presence of the transgene. The frequency of gene flow ranged from 0 to 0.488%. In 2009, the order of gene flow frequency was as follows: weedy rice > Chunjiang 016 > Xiushui 09 and Zhongzu 14 > Guodao 1, Zhongzheyou 1 and Zhongzao 22. Gene flow frequencies were generally higher in 2009 than in 2010, but did not differ significantly among rice materials. Gene flow frequency was the highest in weedy rice followed by the inbred japonica rice. The risk of gene flow differed significantly between years and year-to-year variance could mask risk differences among pollen recipients. Gene flow was generally lesser in taller pollen recipients than in shorter ones, but plant height only accounted for about 30% of variation in gene flow. When flowering synchrony was maximized, as in this study, low frequencies of gene flow occurred from herbicide-resistant japonica rice to other cultivars and

  12. Chemical and sensory characterization of DOC red wines from Marche (Italy) related to vintage and grape cultivars.

    Science.gov (United States)

    Boselli, Emanuele; Boulton, Roger B; Thorngate, John H; Frega, Natale G

    2004-06-16

    Monomeric phenols, color and copigmentation parameters, pigments with different chemical structure, tannin, glucose, fructose, glycerol, ethanol, and organic acids were determined in DOC red wines from Marche (Italy), obtained during three different vintages ranging from 1996 to 2000. The intensity of the bitter and astringent tastes of the wines was determined with panel tastings. Lacrima di Morro and Vernaccia di Serrapetrona (obtained from local cultivars) were different from Rosso Piceno, Rosso Piceno Superiore, and Rosso Conero (produced from different percentages of Sangiovese and Montepulciano). Vernaccia, a red, sweet, "spumante" wine, was an outlier. Lacrima showed a low tannin content, a high content of small pigments and phenols, and a high ratio of copigmented color, which persisted after 3 years of aging. The chemical determinations accounted for a high percentage of variability of measured panel astringency, copigmented color, and measured wine absorbance at 520 nm. It was not possible to create a predictive model for bitterness.

  13. GS6, a member of the GRAS gene family, negatively regulates grain size in rice.

    Science.gov (United States)

    Sun, Lianjun; Li, Xiaojiao; Fu, Yongcai; Zhu, Zuofeng; Tan, Lubin; Liu, Fengxia; Sun, Xianyou; Sun, Xuewen; Sun, Chuanqing

    2013-10-01

    Grain size is an important yield-related trait in rice. Intensive artificial selection for grain size during domestication is evidenced by the larger grains of most of today's cultivars compared with their wild relatives. However, the molecular genetic control of rice grain size is still not well characterized. Here, we report the identification and cloning of Grain Size 6 (GS6), which plays an important role in reducing grain size in rice. A premature stop at the +348 position in the coding sequence (CDS) of GS6 increased grain width and weight significantly. Alignment of the CDS regions of GS6 in 90 rice materials revealed three GS6 alleles. Most japonica varieties (95%) harbor the Type I haplotype, and 62.9% of indica varieties harbor the Type II haplotype. Association analysis revealed that the Type I haplotype tends to increase the width and weight of grains more than either of the Type II or Type III haplotypes. Further investigation of genetic diversity and the evolutionary mechanisms of GS6 showed that the GS6 gene was strongly selected in japonica cultivars. In addition, a "ggc" repeat region identified in the region that encodes the GRAS domain of GS6 played an important historic role in the domestication of grain size in rice. Knowledge of the function of GS6 might aid efforts to elucidate the molecular mechanisms that control grain development and evolution in rice plants, and could facilitate the genetic improvement of rice yield. © 2013 Institute of Botany, Chinese Academy of Sciences.

  14. Competitive and Allelopathic Effects of Wild Rice Accessions (Oryza longistaminata) at Different Growth Stages.

    Science.gov (United States)

    Shen, Shicai; Xu, Gaofeng; Clements, David Roy; Jin, Guimei; Zhang, Fudou; Tao, Dayun; Xu, Peng

    2016-01-01

    The competitive and allelopathic effects of wild rice (Oryza longistaminata) accessions on barnyard grass at different growth stages determined by days after sowing (0, 30, 60 and 90 days) were studied in greenhouse pot experiments. Wild rice accession RL159 exhibited the greatest height and tillering. The weed suppression rates of wild rice accessions OL and F1 on barnyard grass were significantly higher than for other rice accessions, with the lowest being O. sativa cultivar RD23. The highest suppression rates of OL and F1 were 80.23 and 73.96% at barnyard grass growth stages of 90 days and 60 days. At a 90 growth stage, wild rice accessions RL159 and RL169 caused 61.33 and 54.51% inhibition in barnyard grass growth, respectively. Under the same conditions, the competitive inhibition rates of OL, F1, RL159, RL169 and RL219 against barnyard grass were markedly lower than their weed suppressive effects, but were relatively similar for RD23. The allelopathic inhibition of OL and F1 on barnyard grass was significantly higher than other rice accessions. The highest allelopathic rates of OL and F1 were 60.61 and 56.87% at the 0 day growth stage. It is concluded that wild rice accessions OL and F1 exhibited the highest allelopathic activity along with moderate competitive ability against barnyard grass; wild rice accession RL159 had the highest competitive ability and moderate allelopathic activity on barnyard grass. Thus, the three wild rice accessions OL, F1 and RL159 could be used as ideal breeding materials for cultivated rice improvement.

  15. Testing of Rice Stocks for Their Survival of Winter Cold

    Directory of Open Access Journals (Sweden)

    Hiroshi Ikehashi

    2018-03-01

    Full Text Available Rice cultivation is considered to be initiated by vegetative propagation of sprout from wild perennial stocks. To test whether any presently cultivated rice cultivar can survive the winter cold or not, rice stocks of several cultivars including indica and japonica types were placed in a shallow pool from October to April in 2015–2016 and 2016–2017. During the coldest period of the winter, the bases of the stocks were placed 5–6 cm below the surface of water, where temperatures ranged from 3 °C to 5 °C, while the surface was frozen for two or three times and covered with snow for a day. Only one cultivar, Nipponbare, a japonica type, survived the winter cold and regenerated sprouts in the end of April or early May. A possibility to develop perennial cultivation of rice or perennial hybrid rice is discussed.

  16. Phenological Variation and its Relation with Yield in several Wheat (Triticum aestivum L. Cultivars under Normal and Late Sowing Mediated Heat Stress Condition

    Directory of Open Access Journals (Sweden)

    Kamrun NAHAR

    2010-09-01

    Full Text Available Phenological performance in relation to yield of five modern varieties of wheat Sourav, Pradip, Sufi, Shatabdi and Bijoy were evaluated under two growing environments; one is normal growing environment (sowing at November 30 and the other is post anthesis heat stressed environment (sowing at December 30. In case of late seeding, the varieties phased a significant level of high temperature stress that also significantly affected the required days to germination, booting, anthesis, maturity of all varieties including the yield as compared to normal sowing treatment. The temperature during the grain filling or grain maturing period was near 23C in case of normal seeding and it was near about 28C to 30C and sometimes reached above this range in the later period of late seeded treatment. In the normal sowing treatment the germination period was lower than the late sowing treatment as during that time the temperature was higher as compared to late sowing condition where temperature was lower. Days to anthesis and booting decreased due to late sown heat stress condition regardless the cultivars. These phenological characteristics under heat stressed condition led the wheat cultivars to significantly lower the grain yield as compared to normal condition. Due to heat stress, the yield reduction was 69.53% in Sourav, 58.41% in Pradip, 73.01% in Sufi, 55.46% in Shatabdi and 53.42% in Bijoy.

  17. Isozymes variability in rice mutants induced by fast neutrons and gamma rays

    International Nuclear Information System (INIS)

    Fuentes, J.L.; Alvarez, A.; Gutierrez, L.; Deus, J.E.

    2001-01-01

    The isozyme variability of a group of rice mutants induced through gamma and fast neutron (14 MeV) irradiation was studied. Polymorphisms were detected using esterase, peroxidase, polyphenol oxidase and alcohol dehydrogenase systems. The mean value of genetic similarity among the different cultivars, which arose from isozymes, was 0.75. The dendrogram was constructed based on genetic similarity matrices, designed with isozyme data using the unweighed pair group method arithmetic average (UPGMA) method. The efficiency of the UPGMA model for the estimation of genetic relationship among cultivars was supported by cophenetic correlation coefficients. Such values indicate that the distortion degree for the estimated similarities was minimal. It was found that both gamma rays and fast neutrons generated a wide range of variability which can be detected by means of isozyme patterns, even in closely related cultivars. (author)

  18. Isozymes variability in rice mutants induced by fast neutrons and gamma rays

    Energy Technology Data Exchange (ETDEWEB)

    Fuentes, J L; Alvarez, A [Centro de Estudios Aplicados al Desarrollo Nuclear (CEADEN), Miramar, Playa, Havana (Cuba); Gutierrez, L; Deus, J E [Instituto de Investigaciones del Arroz, Bauta, Havana (Cuba)

    2001-05-01

    The isozyme variability of a group of rice mutants induced through gamma and fast neutron (14 MeV) irradiation was studied. Polymorphisms were detected using esterase, peroxidase, polyphenol oxidase and alcohol dehydrogenase systems. The mean value of genetic similarity among the different cultivars, which arose from isozymes, was 0.75. The dendrogram was constructed based on genetic similarity matrices, designed with isozyme data using the unweighed pair group method arithmetic average (UPGMA) method. The efficiency of the UPGMA model for the estimation of genetic relationship among cultivars was supported by cophenetic correlation coefficients. Such values indicate that the distortion degree for the estimated similarities was minimal. It was found that both gamma rays and fast neutrons generated a wide range of variability which can be detected by means of isozyme patterns, even in closely related cultivars. (author)

  19. Nicotianamine synthase overexpression positively modulates iron homeostasis-related genes in high iron rice

    Directory of Open Access Journals (Sweden)

    Meng eWang

    2013-05-01

    Full Text Available Nearly one-third of the world population, mostly women and children, suffer from iron malnutrition and its consequences, such as anemia or impaired mental development. Biofortification of rice, which is a staple crop for nearly half of the world’s population, can significantly contribute in alleviating iron deficiency. NFP rice (transgenic rice expressing nicotianamine synthase, ferritin and phytase genes has a more than six-fold increase in iron content in polished rice grains, resulting from the synergistic action of nicotianamine synthase (NAS and ferritin transgenes. We investigated iron homeostasis in NFP plants by analyzing the expression of 28 endogenous rice genes known to be involved in the homeostasis of iron and other metals, in iron-deficient and iron-sufficient conditions. RNA was collected from different tissues (roots, flag leaves, grains and at three developmental stages during grain filling. NFP plants showed increased sensitivity to iron-deficiency conditions and changes in the expression of endogenous genes involved in nicotianamine (NA metabolism, in comparison to their non-transgenic siblings. Elevated transcript levels were detected in NFP plants for several iron transporters. In contrast, expression of OsYSL2, which encodes a member of Yellow Stripe-like protein family, and a transporter of the NA-Fe(II complex was reduced in NFP plants under low iron conditions, indicating that expression of OsYSL2 is regulated by the endogenous iron status. Expression of the transgenes did not significantly affect overall iron homeostasis in NFP plants, which establishes the engineered push-pull mechanism as a suitable strategy to increase rice endosperm iron content.

  20. Resistência de soja a insetos: IV. Comportamento de cultivares e linhagens em relação a Hedilepta indicata (Fabr. Resistance of soybean to insects: IV. Performance of cultivars and lines in relation to Hedilepta indicata (Fabr.

    Directory of Open Access Journals (Sweden)

    André Luiz Lourenção

    1985-01-01

    Full Text Available Em condições de campo e de telado, estudou-se o comportamento das seguintes linhagens e cultivares de soja em relação à lagarta-enroladeira, Hedilepta indicata (Fabr., 1775: PI 227687, IAC 73-228, IAC 79-1823, 'Santa Rosa', IAC 80-596-2, 'IAC 12', 'IAC 8', IAC 78-2318, D 72-9601-1, PI 171451, 'IAC São Carlos' e PI 229358, quanto ao número de pontos de ataque do inseto. Tanto no campo como em telado, IAC 73-228 e PI 229358 apresentaram, respectivamente, o menor e o maior valor. Em condições de campo, PI 227687 e IAC 73-228 sofreram as menores perdas de área foliar devidas ao ataque de H. indicata, enquanto 'IAC São Carlos', PI 171451 e PI 229358 se mostraram como os mais suscetíveis. Em outro experimento conduzido em campo, utilizando-se PI 274454, PI 274453, IAC 73-228, 'IAC 12', IAC 80-596-2, 'UFV-1', IAC 78-2318 e 'Paraná', os dois primeiros apresentaram alto nível de resistência ao inseto, superior ao exibido por IAC 73-228, sendo que 'Paraná' teve a maior perda de área foliar. Ainda em condições de campo, em área de seleção de plantas F2 descendentes do cruzamento de 'Paraná' com PI 274453, foram avaliadas, individualmente, plantas quanto à área foliar comida: os resultados obtidos sugerem que a resistência da PI 274453 a H. indicata seja devida a um gene dominante.Performance of soybean cultivars and lines in relation to H. indicata was studied under field and screen house conditions. Differences in the number of points of attack (characterized by the rolling or junction of the folioles by means of silk secretion were evaluated in PI 227687, IAC 73-228, IAC 79-1823, 'Santa Rosa', IAC 80-596-2, 'IAC 12', 'IAC 8', IAC 78-2318, D 72-9601-1, PI 171451, 'IAC São Carlos' and PI 229358; in both, field and screen house conditions, IAC 73-228 and PI 229358 showed, respectively, the lowest and the highest values. In the field, PI 227687 and IAC 73-228 presented low defoliation, while 'IAC São Carlos', PI 171451 and PI

  1. Lowland rice yield estimates based on air temperature and solar radiation

    International Nuclear Information System (INIS)

    Pedro Júnior, M.J.; Sentelhas, P.C.; Moraes, A.V.C.; Villela, O.V.

    1995-01-01

    Two regression equations were developed to estimate lowland rice yield as a function of air temperature and incoming solar radiation, during the crop yield production period in Pindamonhangaba, SP, Brazil. The following rice cultivars were used: IAC-242, IAC-100, IAC-101 and IAC-102. The value of optimum air temperature obtained was 25.0°C and of optimum global solar radiation was 475 cal.cm -2 , day -1 . The best agrometeorological model was the one that related least deviation of air temperature and solar radiation in relation to the optimum value obtained through a multiple linear regression. The yield values estimated by the model showed good fit to actual yields of lowland rice (less than 10%). (author) [pt

  2. Coordination of Leaf Photosynthesis, Transpiration, and Structural Traits in Rice and Wild Relatives (Genus Oryza).

    Science.gov (United States)

    Giuliani, Rita; Koteyeva, Nuria; Voznesenskaya, Elena; Evans, Marc A; Cousins, Asaph B; Edwards, Gerald E

    2013-07-01

    The genus Oryza, which includes rice (Oryza sativa and Oryza glaberrima) and wild relatives, is a useful genus to study leaf properties in order to identify structural features that control CO(2) access to chloroplasts, photosynthesis, water use efficiency, and drought tolerance. Traits, 26 structural and 17 functional, associated with photosynthesis and transpiration were quantified on 24 accessions (representatives of 17 species and eight genomes). Hypotheses of associations within, and between, structure, photosynthesis, and transpiration were tested. Two main clusters of positively interrelated leaf traits were identified: in the first cluster were structural features, leaf thickness (Thick(leaf)), mesophyll (M) cell surface area exposed to intercellular air space per unit of leaf surface area (S(mes)), and M cell size; a second group included functional traits, net photosynthetic rate, transpiration rate, M conductance to CO(2) diffusion (g(m)), stomatal conductance to gas diffusion (g(s)), and the g(m)/g(s) ratio.While net photosynthetic rate was positively correlated with gm, neither was significantly linked with any individual structural traits. The results suggest that changes in gm depend on covariations of multiple leaf (S(mes)) and M cell (including cell wall thickness) structural traits. There was an inverse relationship between Thick(leaf) and transpiration rate and a significant positive association between Thick(leaf) and leaf transpiration efficiency. Interestingly, high g(m) together with high g(m)/g(s) and a low S(mes)/g(m) ratio (M resistance to CO(2) diffusion per unit of cell surface area exposed to intercellular air space) appear to be ideal for supporting leaf photosynthesis while preserving water; in addition, thick M cell walls may be beneficial for plant drought tolerance.

  3. Levels of infants' urinary arsenic metabolites related to formula feeding and weaning with rice products exceeding the EU inorganic arsenic standard.

    Directory of Open Access Journals (Sweden)

    Antonio J Signes-Pastor

    Full Text Available Early childhood inorganic arsenic (i-As exposure is of particular concern since it may adversely impact on lifetime health outcomes. Infants' urinary arsenic (As metabolites were analysed in 79 infants by inductively coupled plasma-mass spectrometric detection (IC-ICP-MS to evaluate i-As exposure pre- and post-weaning. Levels of i-As in rice-based weaning and infants' foods were also determined to relate to urinary As levels. Higher As levels, especially of monomethylarsonic acid (MMA and dimethylarsinic acid (DMA, were found in urine from formula fed infants compared to those breastfed. Urine from infants post-weaning consuming rice-products resulted in higher urinary MMA and DMA compared to the paired pre-weaning urine samples. The European Union (EU has regulated i-As in rice since 1st January 2016. Comparing infants' rice-based foods before and after this date, little change was found. Nearly ¾ of the rice-based products specifically marketed for infants and young children contained i-As over the 0.1 mg/kg EU limit. Efforts should be made to provide low i-As rice and rice-based products consumed by infants and young children that do not exceed the maximum i-As level to protect this vulnerable subpopulation.

  4. Cadmium accumulation in and tolerance of rice (Oryza sativa L.) varieties with different rates of radial oxygen loss

    International Nuclear Information System (INIS)

    Wang, M.Y.; Chen, A.K.; Wong, M.H.; Qiu, R.L.; Cheng, H.; Ye, Z.H.

    2011-01-01

    Cadmium (Cd) uptake and tolerance were investigated among 20 rice cultivars based on a field experiment (1.2 mg Cd kg -1 in soil) and a soil pot trial (control, 100 mg Cd kg -1 ), and rates of radial oxygen loss (ROL) were measured under a deoxygenated solution. Significant differences were found among the cultivars in: (1) brown rice Cd concentrations (0.11-0.29 mg kg -1 ) in a field soil, (2) grain Cd tolerance (34-113%) and concentrations (2.1-6.5 mg kg -1 ) in a pot trial, and (3) rates of ROL (15-31 mmol O 2 kg -1 root d.w. h -1 ). Target hazard quotients were calculated for the field experiment to assess potential Cd risk. Significant negative relationships were found between rates of ROL and concentrations of Cd in brown rice or straw under field and greenhouse conditions, indicating that rice cultivars with higher rates of ROL had higher capacities for limiting the transfer of Cd to rice and straw. - Highlights: → There are significant differences in brown rice Cd concentrations and rates of ROL among the rice cultivars. → The rates of ROL are significantly correlated with concentrations of Cd in brown rice. → Rice cultivars with higher rates of ROL have higher capacities for limiting the transfer of Cd to rice and straw. - Rice cultivars with high rates of ROL tended to accumulate low Cd in grains.

  5. A comparative study of competitiveness between different genotypes of weedy rice (Oryza sativa) and cultivated rice.

    Science.gov (United States)

    Dai, Lei; Dai, Weimin; Song, Xiaoling; Lu, Baorong; Qiang, Sheng

    2014-01-01

    Competition from weedy rice can cause serious yield losses to cultivated rice. However, key traits that facilitate competitiveness are still not well understood. To explore the mechanisms behind the strong growth and competitive ability, replacement series experiments were established with six genotypes of weedy rice from different regions and one cultivated rice cultivar. (1) Weedy rice from southern China had the greatest impact on growth and yield of cultivated rice throughout the entire growing season. Weedy rice from the northeast was very competitive during the early vegetative stage while the competitive effects of eastern weedy rice were more detrimental at later crop-growth stages. (2) As the proportion of weedy rice increased, plant height, tillers, above-ground biomass, and yield of cultivated rice significantly declined; the crop always being at disadvantage regardless of proportion. (3) Weedy biotypes with greater diversity as estimated by their Shannon indexes were more detrimental to the growth and yield of cultivated rice. Geographic origin (latitude) of weedy rice biotype, its mixture proportion under competition with the crop and its genetic diversity are determinant factors of the outcome of competition and the associated decline in the rice crop yield. © 2013 Society of Chemical Industry. © 2013 Society of Chemical Industry.

  6. Auxin and Cell Wall Invertase Related Signaling during Rice Grain Development

    Directory of Open Access Journals (Sweden)

    Sarah Russell French

    2014-02-01

    Full Text Available Indole-3-acetic acid (IAA synthesis is required for grain-fill in maize and appears to be regulated by cell-wall invertase (CWIN activity. OsYUC12 is one of three IAA biosynthesis genes we previously reported as expressed during early rice grain development, correlating with a large increase in IAA content of the grain. This work aimed to investigate further the role of OsYUC12 and its relationship to CWIN activity and invertase inhibitors (INVINH. The analysis shows a brief peak of OsYUC12 expression early in endosperm development. Meta-analysis of microarray data, confirmed by quantitative expression analysis, revealed that OsYUC12 is coexpressed with OsIAA29, which encodes an unusual AUX/IAA transcription factor previously reported as poorly expressed. Maximum expression of OsYUC12 and OsIAA29 coincided with maximum CWIN activity, but also with a peak in INVINH expression. Unlike ZmYUC1, OsYUC12 expression is not reduced in the rice CWIN mutant, gif1. Several reports have investigated CWIN expression in rice grains but none has reported on expression of INVINH in this species. We show that rice has 54 genes encoding putative invertase/pectin methylesterase inhibitors, seven of which are expressed exclusively during grain development. Our results suggest a more complex relationship between IAA, CWIN, and INVINH than previously proposed.

  7. Parasitic weed incidence and related economic losses in rice in Africa

    NARCIS (Netherlands)

    Rodenburg, Jonne; Demont, Matty; Zwart, Sander J.; Bastiaans, Lammert

    2016-01-01

    Parasitic weeds pose increasing threats to rain-fed rice production in Africa. Most important species are Striga asiatica, S. aspera and S. hermonthica in rain-fed uplands, and Rhamphicarpa fistulosa in rain-fed lowlands. Information on the regional spread and economic importance of parasitic weeds

  8. Identity and relative importance of egg predators of rice leaffolders (Lepidoptera:Pyralidae.)

    NARCIS (Netherlands)

    Kraker, de J.; Huis, van A.; Lenteren, van J.C.; Heong, K.L.; Rabbinge, R.

    2000-01-01

    Field andlaboratory studies on predation of rice leaffolder eggs (i.e., Cnaphalocrocis medinalis (Guenée) and Marasmia patnalis Bradley) were conducted to identify major predator species. Direct observations of predation on field-exposed eggs showed that in two seasons Metioche vittaticollis (Stål)

  9. Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice.

    Directory of Open Access Journals (Sweden)

    Eri Ogiso-Tanaka

    Full Text Available In rice (Oryza sativa L., there is a diversity in flowering time that is strictly genetically regulated. Some indica cultivars show extremely late flowering under long-day conditions, but little is known about the gene(s involved. Here, we demonstrate that functional defects in the florigen gene RFT1 are the main cause of late flowering in an indica cultivar, Nona Bokra. Mapping and complementation studies revealed that sequence polymorphisms in the RFT1 regulatory and coding regions are likely to cause late flowering under long-day conditions. We detected polymorphisms in the promoter region that lead to reduced expression levels of RFT1. We also identified an amino acid substitution (E105K that leads to a functional defect in Nona Bokra RFT1. Sequencing of the RFT1 region in rice accessions from a global collection showed that the E105K mutation is found only in indica, and indicated a strong association between the RFT1 haplotype and extremely late flowering in a functional Hd1 background. Furthermore, SNPs in the regulatory region of RFT1 and the E105K substitution in 1,397 accessions show strong linkage disequilibrium with a flowering time-associated SNP. Although the defective E105K allele of RFT1 (but not of another florigen gene, Hd3a is found in many cultivars, relative rate tests revealed no evidence for differential rate of evolution of these genes. The ratios of nonsynonymous to synonymous substitutions suggest that the E105K mutation resulting in the defect in RFT1 occurred relatively recently. These findings indicate that natural mutations in RFT1 provide flowering time divergence under long-day conditions.

  10. Rapid identification of red-flesh loquat cultivars using EST-SSR markers based on manual cultivar identification diagram strategy.

    Science.gov (United States)

    Li, X Y; Xu, H X; Chen, J W

    2014-04-29

    Manual cultivar identification diagram is a new strategy for plant cultivar identification based on DNA markers, providing information to efficiently separate cultivars. We tested 25 pairs of apple EST-SSR primers for amplification of PCR products from loquat cultivars. These EST-SSR primers provided clear amplification products from the loquat cultivars, with a relatively high transferability rate of 84% to loquat; 11 pairs of primers amplified polymorphic products. After analysis of 24 red-fleshed loquat accessions, we found that only 7 pairs of primers could clearly separate all of them. A cultivar identification diagram of the 24 cultivars was constructed using polymorphic bands from the DNA fingerprints and EST-SSR primers. Any two of the 24 cultivars could be rapidly separated from each other, according to the polymorphic bands from the cultivars; the corresponding primers were marked in the correct position on the cultivar identification diagram. This red-flesh loquat cultivar identification diagram can separate the 24 red-flesh loquat cultivars, which is of benefit for loquat cultivar identification for germplasm management and breeding programs.

  11. Using an Active-Optical Sensor to Develop an Optimal NDVI Dynamic Model for High-Yield Rice Production (Yangtze, China).

    Science.gov (United States)

    Liu, Xiaojun; Ferguson, Richard B; Zheng, Hengbiao; Cao, Qiang; Tian, Yongchao; Cao, Weixing; Zhu, Yan

    2017-03-24

    The successful development of an optimal canopy vegetation index dynamic model for obtaining higher yield can offer a technical approach for real-time and nondestructive diagnosis of rice (Oryza sativa L) growth and nitrogen (N) nutrition status. In this study, multiple rice cultivars and N treatments of experimental plots were carried out to obtain: normalized difference vegetation index (NDVI), leaf area index (LAI), above-ground dry matter (DM), and grain yield (GY) data. The quantitative relationships between NDVI and these growth indices (e.g., LAI, DM and GY) were analyzed, showing positive correlations. Using the normalized modeling method, an appropriate NDVI simulation model of rice was established based on the normalized NDVI (RNDVI) and relative accumulative growing degree days (RAGDD). The NDVI dynamic model for high-yield production in rice can be expressed by a double logistic model: RNDVI = ( 1 + e - 15.2829 × ( R A G D D i - 0.1944 ) ) - 1 - ( 1 + e - 11.6517 × ( R A G D D i - 1.0267 ) ) - 1 (R2 = 0.8577**), which can be used to accurately predict canopy NDVI dynamic changes during the entire growth period. Considering variation among rice cultivars, we constructed two relative NDVI (RNDVI) dynamic models for Japonica and Indica rice types, with R2 reaching 0.8764** and 0.8874**, respectively. Furthermore, independent experimental data were used to validate the RNDVI dynamic models. The results showed that during the entire growth period, the accuracy (k), precision (R2), and standard deviation of RNDVI dynamic models for the Japonica and Indica cultivars were 0.9991, 1.0170; 0.9084**, 0.8030**; and 0.0232, 0.0170, respectively. These results indicated that RNDVI dynamic models could accurately reflect crop growth and predict dynamic changes in high-yield crop populations, providing a rapid approach for monitoring rice growth status.

  12. Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia.

    Science.gov (United States)

    Thomas, Evert; Tovar, Eduardo; Villafañe, Carolina; Bocanegra, José Leonardo; Moreno, Rodrigo

    2017-12-01

    Crop wild relatives (CWRs) of rice hold important traits that can contribute to enhancing the ability of cultivated rice (Oryza sativa and O. glaberrima) to produce higher yields, cope with the effects of climate change, and resist attacks of pests and diseases, among others. However, the genetic resources of these species remain dramatically understudied, putting at risk their future availability from in situ and ex situ sources. Here we assess the distribution of genetic diversity of the four rice CWRs known to occur in Colombia (O. glumaepatula, O. alta, O. grandiglumis, and O. latifolia). Furthermore, we estimated the degree of overlap between areas with suitable habitat for cultivated and wild rice, both under current and predicted future climate conditions to assess the potential spatiotemporal scale of potential gene flow from GM rice to its CWRs. Our findings suggest that part of the observed genetic diversity and structure, at least of the most exhaustively sampled species, may be explained by their glacial and post-glacial range dynamics. Furthermore, in assessing the expected impact of climate change and the potential spatiotemporal scale of gene flow between populations of CWRs and GM rice we find significant overlap between present and future suitable areas for cultivated rice and its four CWRs. Climate change is expected to have relatively limited negative effects on the rice CWRs, with three species showing opportunities to expand their distribution ranges in the future. Given (i) the sparse presence of CWR populations in protected areas (ii) the strong suitability overlap between cultivated rice and its four CWRs; and (iii) the complexity of managing and regulating areas to prevent alien gene flow, the first priority should be to establish representative ex situ collections for all CWR species, which currently do not exist. In the absence of studies under field conditions on the scale and extent of gene flow between cultivated rice and its Colombian

  13. New hybrid rice cultivar 'Zhefuliangyou 12' with improved grain quality produced by leaf color marker-labeled male sterile line and mutant with enhanced tillers and improved grain quality

    International Nuclear Information System (INIS)

    Mei Shufang; Zhao Hua; Wang Yongqiang; Shu Xiaoli; Wu Dianxing

    2013-01-01

    In order to breed high yielding and good grain quality new variety with controllable seed purity, hybrid rice 'Zhefuliangyou 12' was produced by green-revertible albino leaf color marker-labeled two-line male sterile line 'NHR111S' and mutant 'ZF-2' with enhanced tillers and improved grain quality, which was characterized by improved grain quality, rice blast resistance and lodging resistance. Breeding protocol, characteristics, and high yielding cultivation techniques of 'Zhefuliangyou 12' were briefly introduced in the current paper. (authors)

  14. Cytological and transcriptional dynamics analysis of host plant revealed stage-specific biological processes related to compatible rice-Ustilaginoidea virens interaction.

    Directory of Open Access Journals (Sweden)

    Jinquan Chao

    Full Text Available Rice false smut, a fungal disease caused by Ustilaginoidea virens is becoming a severe detriment to rice production worldwide. However, little is known about the molecular response of rice to attacks by the smut pathogen. In this article, we define the initial infection process as having three stages: initial colonization on the pistil (stage 1, S1, amplification on the anther (stage 2, S2 and sporulation in the anther chambers (stage 3, S3. Based on the transcriptome of rice hosts in response to U. virens in two separate years, we identified 126, 204, and 580 specific regulated genes in their respective stages S1, S2, and S3, respectively, by excluding common expression patterns in other openly biotic/abiotic databases using bioinformatics. As the disease progresses, several stage-specific biological processes (BP terms were distinctively enriched: "Phosphorylation" in stage S1, "PCD" in S2, and "Cell wall biogenesis" in S3, implying a concise signal cascade indicative of the tactics that smut pathogens use to control host rice cells during infection. 113 regulated genes were coexpressed among the three stages. They shared highly conserved promoter cis-element in the promoters in response to the regulation of WRKY and Myb for up-regulation, and ABA and Ca2+ for down regulation, indicating their potentially critical roles in signal transduction during rice-U. virens interaction. We further analyzed seven highly regulated unique genes; four were specific to pollen development, implying that pollen-related genes play critical roles in the establishment of rice susceptibility to U. virens. To my knowledge, this is the first report about probing of molecular response of rice to smut pathogen infection, which will greatly expand our understanding of the molecular events surrounding infection by rice false smut.

  15. Comparing simple root phenotyping methods on a core set of rice genotypes.

    Science.gov (United States)

    Shrestha, R; Al-Shugeairy, Z; Al-Ogaidi, F; Munasinghe, M; Radermacher, M; Vandenhirtz, J; Price, A H

    2014-05-01

    Interest in belowground plant growth is increasing, especially in relation to arguments that shallow-rooted cultivars are efficient at exploiting soil phosphorus while deep-rooted ones will access water at depth. However, methods for assessing roots in large numbers of plants are diverse and direct comparisons of methods are rare. Three methods for measuring root growth traits were evaluated for utility in discriminating rice cultivars: soil-filled rhizotrons, hydroponics and soil-filled pots whose bottom was sealed with a non-woven fabric (a potential method for assessing root penetration ability). A set of 38 rice genotypes including the OryzaSNP set of 20 cultivars, additional parents of mapping populations and products of marker-assisted selection for root QTLs were assessed. A novel method of image analysis for assessing rooting angles from rhizotron photographs was employed. The non-woven fabric was the easiest yet least discriminatory method, while the rhizotron was highly discriminatory and allowed the most traits to be measured but required more than three times the labour of the other methods. The hydroponics was both easy and discriminatory, allowed temporal measurements, but is most likely to suffer from artefacts. Image analysis of rhizotrons compared favourably to manual methods for discriminating between cultivars. Previous observations that cultivars from the indica subpopulation have shallower rooting angles than aus or japonica cultivars were confirmed in the rhizotrons, and indica and temperate japonicas had lower maximum root lengths in rhizotrons and hydroponics. It is concluded that rhizotrons are the preferred method for root screening, particularly since root angles can be assessed. © 2013 German Botanical Society and The Royal Botanical Society of the Netherlands.

  16. Identification of the second mutation of BADH2 gene derived from rice mutant lines induced by gamma rays

    International Nuclear Information System (INIS)

    I Ishak

    2016-01-01

    The BADH2 gene acts as suppressor of 2-acetyl-1-pyrolline (2AP) biosynthesis in plants. 2AP is the volatile compound which provides fragrance in rice. Biosynthesis of 2AP occurs when BADH2 loses its function as suppressor gene. Aromatic rice cultivars naturally incur mutation of BADH2 gene at 8 bp. In this experiment, aromatic mutant rice lines derived from irradiation of Sintanur cultivar by gamma rays with dose of 100 Gy were studied in molecular level. These mutant lines were characterized at the M10 plantgeneration under the assumption that genetically these aromatic mutant rice lines were homozygotic. Several primers related to aroma in rice have been used for polymerase chain reaction (PCR) in a thermal cycler instrument. Gel electrophoreses were carried out using 1.5% agarose in TAE buffer. DNA fragments at 254 bp and 355 bp (base pair) were taken and amplified by primer for nucleotide sequencing of these fragments. Molecular identification and characterization after electrophoresis showed that the mutant line from AR1020 can be differentiated from AR.1080 at 254 bp. Nucleotide sequence data from of these DNA fragments showed that point mutations (deletions and substitutions) occurred at the BADH2 gene in exon 7; those are called second mutation and were caused by gamma rays effects. The Sintanur variety was used as check cultivar and its DNA sequence was compared to that of the AR.1020 mutant line. The results from both DNA sequences (from cv. Sintanur and AR.1020) derived from fragments at 254 bp show that point mutations occurred within exon 7 and earlier stop codon occurred in the AR.1020 mutant rice line. Further, the use of EA primer in PCR resulted in detection of deletion and substitution of nucleotides in the AR.1020 mutant line. (author)

  17. Danish apple cultivars

    DEFF Research Database (Denmark)

    Larsen, Bjarne; Pedersen, Carsten; Ørgaard, Marian

    2017-01-01

    Abstract We made a genetic analysis of about 500 apple cultivars, which either originate from Denmark or have been of greater importance in Denmark. To study the diversity and parentage among the cultivars, 15 SSR markers were used. A new PCR-based protocol for identification of S-alleles was dev......Abstract We made a genetic analysis of about 500 apple cultivars, which either originate from Denmark or have been of greater importance in Denmark. To study the diversity and parentage among the cultivars, 15 SSR markers were used. A new PCR-based protocol for identification of S...

  18. Rice paddy Nitrospirae encode and express genes related to sulfate respiration: proposal of the new genus Candidatus Sulfobium

    KAUST Repository

    Zecchin, Sarah

    2017-10-02

    Nitrospirae spp. distantly related to thermophilic, sulfate-reducing Thermodesulfovibrio species are regularly observed in environmental surveys of anoxic marine and freshwater habitats. However, little is known about their genetic make-up and physiology. Here, we present the draft genome of Nitrospirae bacterium Nbg-4 as a representative of this clade and analyzed its in situ protein expression under sulfate-enriched and sulfate-depleted conditions in rice paddy soil. The genome of Nbg-4 was assembled from replicated metagenomes of rice paddy soil that was used to grow rice plants in the presence and absence of gypsum (CaSO4x2H2O). Nbg-4 encoded the full pathway of dissimilatory sulfate reduction and showed expression thereof in gypsum-amended anoxic bulk soil as revealed by parallel metaproteomics. In addition, Nbg-4 encoded the full pathway of dissimilatory nitrate reduction to ammonia, which was expressed in bulk soil without gypsum amendment. The relative abundance of Nbg-4-related metagenome reads was similar under both treatments indicating that it maintained stable populations while shifting its energy metabolism. Further genome reconstruction revealed the potential to utilize butyrate, formate, H2, or acetate as electron donor, with the Wood-Ljungdahl pathway being expressed under both conditions. Comparison to publicly available Nitrospirae genome bins confirmed that the pathway for dissimilatory sulfate reduction is also present in related Nitrospirae recovered from groundwater. Subsequent phylogenomics showed that such microorganisms form a novel genus within the phylum Nitrospirae, with Nbg-4 as a representative species. Based on the widespread occurrence of this novel genus, we propose for Nbg 4 the name Candidatus Sulfobium mesophilum, gen. nov., spec. nov.

  19. Phenological Variation and its Relation with Yield in several Wheat (Triticum aestivum L. Cultivars under Normal and Late Sowing Mediated Heat Stress Condition

    Directory of Open Access Journals (Sweden)

    Kamrun NAHAR

    2010-09-01

    Full Text Available Phenological performance in relation to yield of five modern varieties of wheat �Sourav�, �Pradip�, �Sufi�, �Shatabdi� and �Bijoy� were evaluated under two growing environments; one is normal growing environment (sowing at November 30 and the other is post anthesis heat stressed environment (sowing at December 30. In case of late seeding, the varieties phased a significant level of high temperature stress that also significantly affected the required days to germination, booting, anthesis, maturity of all varieties including the yield as compared to normal sowing treatment. The temperature during the grain filling or grain maturing period was near 23�C in case of normal seeding and it was near about 28�C to 30�C and sometimes reached above this range in the later period of late seeded treatment. In the normal sowing treatment the germination period was lower than the late sowing treatment as during that time the temperature was higher as compared to late sowing condition where temperature was lower. Days to anthesis and booting decreased due to late sown heat stress condition regardless the cultivars. These phenological characteristics under heat stressed condition led the wheat cultivars to significantly lower the grain yield as compared to normal condition. Due to heat stress, the yield reduction was 69.53% in �Sourav�, 58.41% in �Pradip�, 73.01% in �Sufi�, 55.46% in �Shatabdi� and 53.42% in �Bijoy�.

  20. Low cadmium (LCD), a novel gene related to cadmium tolerance and accumulation in rice

    OpenAIRE

    Shimo, Hugo; Ishimaru, Yasuhiro; An, Gynheung; Yamakawa, Takashi; Nakanishi, Hiromi; Nishizawa, Naoko K.

    2011-01-01

    The contamination of food crops by cadmium (Cd) is a major concern in food production because it can reduce crop yields and threaten human health. In this study, knockout rice plants (Oryza sativa) tagged with the gene trap vector pGA2707 were screened for Cd tolerance, and the tolerant line lcd was obtained. The lcd mutant showed tolerance to Cd on agar plates and in hydroponic culture during early plant development. Metal concentration measurements in hydroponically grown plants revealed si...

  1. Quantitative trait loci for rice yield-related traits using recombinant ...

    Indian Academy of Sciences (India)

    2011-08-19

    Aug 19, 2011 ... lated by map-based cloning strategy (Ashikari et al. 2005). ... 2000; Kojima et al. 2002; Doi et al. 2004). ... and PH but also on rice yield (Xue et al. 2008; Yan et al. ..... Cho Y. C., Suh J. P., Choi I. S., Hong H. C., Baek M. K., Kang K. H. et al. .... Yan C. J., Liang G. H., Chen F., Li X., Tang S. Z., Yi C. D. et al.

  2. Genetically engineered Rice with transcription factor DREB genes for abiotic stress tolerance(abstract)

    International Nuclear Information System (INIS)

    Datta, S.K.; Datta, K.

    2005-01-01

    Water stress (drought and Salinity) is the most severe limitation to rice productivity. Several breeding approaches (MAS, QTL) applied to suitable genotypes are in place at IRRI and elsewhere. Phenotyping of water stress tolerance is in progress with potential predictability. Dr. Shinozaki's group has cloned a number of transcription factor genes, which have been shown to work in Arabidopsis to achieve drought, cold, and salinity tolerant plants. None of these genes have as yet displayed their potential functioning in rice. Genetic engineering aims at cross talk between different stress signaling pathways leading to stress tolerance. Osmotic Adjustment (OA) is an effective component of abiotic stress (drought and salinity) tolerance in many plants including rice. When plant experiences water stress, OA contributes to turgor maintenance of both shoots and roots. Conventional breeding could not achieve the OA in rice excepting a few rice cultivars, which are partially adapted to water-stress conditions. Several stress-related genes have now been cloned and transferred in to enhance the osmolytes and some transgenic lines showed increased tolerance to osmotic stress. A few strategies could be effectively deployed for a better understanding of water-stress tolerance in rice and to develop transgenic rice, which can survive for a critical period of water-stress conditions: 1) Switching on of transcription factor regulating the expression of several genes related to abiotic stress, 2) Use of a suitable stress inducible promoter driving the target gene for an efficient and directed expression in plants, 3) Understanding of phenotyping and GxE in a given environment, 4) Selection of a few adaptive rice cultivars suitable in drought/salinity prone areas, 5) Microarray, proteomics, QTL and MAS may expedite the cloning and characterizing the stress induced genes, and 6) Finally, the efficient transformation system for generating a large number of transgenic rice of different

  3. Fungal endophyte Phomopsis liquidambari affects nitrogen transformation processes and related microorganisms in the rice rhizosphere

    Directory of Open Access Journals (Sweden)

    Bo eYang

    2015-09-01

    Full Text Available The endophytic fungus Phomopsis liquidambari performs an important ecosystem service by assisting its host with acquiring soil nitrogen (N, but little is known regarding how this fungus influences soil N nutrient properties and microbial communities. In this study, we investigated the impact of P. liquidambari on N dynamics,the abundance and composition of N cycling genes in rhizosphere soil treated with three levels of N (urea. Ammonia-oxidizing archaea (AOA, ammonia-oxidizing bacteria (AOB and diazotrophs were assayed using quantitative real-time polymerase chain reaction and denaturing gradient gel electrophoresis at four rice growing stages (S0: before planting, S1: tillering stage, S2: grain filling stage, and S3: ripening stage. A significant increase in the available nitrate and ammonium contents was found in the rhizosphere soil of endophyte-infected rice under low N conditions. Moreover, P. liquidambari significantly increased the potential nitrification rates (PNR, affected the abundance and community structure of AOA, AOB and diazotrophs under low N conditions in the S1 and S2 stages. The root exudates were determined due to their important role in rhizosphere interactions. P. liquidambari colonization altered the exudation of organic compounds by rice roots and P. liquidambari increased the concentration of soluble saccharides, total free amino acids and organic acids

  4. Asian wild rice is a hybrid swarm with extensive gene flow and feralization from domesticated rice

    OpenAIRE

    Wang, Hongru; Garrett Vieira, Filipe Jorge; Crawford, Jacob E.; Chu, Chengcai; Nielsen, Rasmus

    2017-01-01

    The domestication history of rice remains controversial, with multiple studies reaching different conclusions regarding its origin(s). These studies have generally assumed that populations of living wild rice, O. rufipogon, are descendants of the ancestral population that gave rise to domesticated rice, but relatively little attention has been paid to the origins and history of wild rice itself. Here, we investigate the genetic ancestry of wild rice by analyzing a diverse panel of rice genome...

  5. Classificação de cultivares de brássicas com relação à resistência à traça-das-crucíferas e à presença de glucosinolatos Brassicas cultivars classification in relation to resistance to diamondback moth and to the presence of glucosinolates

    Directory of Open Access Journals (Sweden)

    Robson Thomaz Thuler

    2007-04-01

    Full Text Available O objetivo deste trabalho foi avaliar o efeito de cultivares de repolho e de couve na biologia da traça-das-crucíferas; analisar a composição química das plantas, em relação aos glucosinolatos e aplicar a análise multivariada na classificação das cultivares. Foram utilizadas as cultivares: de repolho verde Chato-de-quintal e o híbrido Midori; de repolho roxo Roxo precoce e o híbrido Roxo TPC00682; e de couve-manteiga Geórgia (padrão de suscetibilidade e Geórgia híbrido HS20. Foram avaliadas as características biológicas da praga: viabilidade e duração das fases larval e pupal, razão sexual, fecundidade das fêmeas, longevidade dos adultos e duração e viabilidade da fase de ovo, tendo-se calculado o potencial reprodutivo corrigido (PRC. Obtiveram-se as correlações entre os parâmetros pelo método de Pearson, e realizaram-se análises multivariadas de agrupamento e de componentes principais. Em cromatógrafo líquido, avaliaram-se a presença de sinigrina e de outros glucosinolatos nas plantas. A cultivar Geórgia e os híbridos HS20 e Roxo foram classificados como altamente suscetíveis; 'Roxo precoce' e 'Midori' como suscetíveis e, 'Chato-de-quintal' como moderadamente resistente à Plutella xylostella. As análises multivariadas proporcionam melhor classificação das cultivares, em razão do grau de resistência apresentado. Os materiais genéticos avaliados não apresentam a substância secundária sinigrina.The objective of this work was to evaluate the effect of cabbage and kale cultivars on the diamondback moth biology; to analyze the plant chemical composition in relation to glucosinolates and to apply the multivariate analysis to classify cultivar resistance. Trials were conduct using: green cabbage cultivar Chato-de-quintal and hybrid Midori; purple cabbage Roxo precoce and purple hybrid TPC00682; kale cultivar Georgia (susceptibility standard and hybrid HS20. The pest biological characteristics evaluated were

  6. 21 CFR 137.350 - Enriched rice.

    Science.gov (United States)

    2010-04-01

    ... 21 Food and Drugs 2 2010-04-01 2010-04-01 false Enriched rice. 137.350 Section 137.350 Food and... Related Products § 137.350 Enriched rice. (a) The foods for which definitions and standards of identity are prescribed by this section are forms of milled rice (except rice coated with talc and glucose and...

  7. Physiological changes and sHSPs genes relative transcription in relation to the acquisition of seed germination during maturation of hybrid rice seed.

    Science.gov (United States)

    Zhu, Li-Wei; Cao, Dong-Dong; Hu, Qi-Juan; Guan, Ya-Jing; Hu, Wei-Min; Nawaz, Aamir; Hu, Jin

    2016-03-30

    During the production of early hybrid rice seed, the seeds dehydrated slowly and retained high moisture levels when rainy weather lasted for a couple of days, and the rice seeds easily occurred pre-harvest sprouting (PHS) along with high temperature. Therefore it is necessary to harvest the seeds before the PHS occurred. The seeds of hybrid rice (Oryza sativa L. subsp. indica) cv. Qianyou No1 that harvests from 19 to 28 days after pollination (DAP) all had high seed vigour. The seed moisture content at 10 DAP was 36.1%, and declined to 28.6% at 19 DAP; the contents of soluble sugar and total starch increased significantly with the development of seeds. The soluble protein content, the level of abscisic acid (ABA) and gibberellin (GA3 ), and ascorbate peroxidase (APX) activity continued to decrease from 10 DAP to 19 DAP. The seeds at 19 DAP had the highest peroxidase (POD) activity and lowest catalase (CAT) activity while the superoxide dismutase (SOD) activity had no significant difference among the different developing periods. The relative expressions of genes 64S Hsp18.0 and Os03g0267200 transcripts increased significantly from 10 to 19 DAP, and then decreased. However, no significant change was recorded in soluble protein, sugar and GA3 after 16 DAP, and they all significantly correlated with seed viability and vigour during the process of seed maturity. The seeds of hybrid rice Qianyou No1 had a higher viability and vigour when harvested from 19 DAP to 28 DAP, the transcription levels of 64S Hsp18.0 and Os03g0267200 increased significantly from 10 DAP to 19 DAP and the highest value was recorded at 19 DAP. The seeds could be harvested as early as 19 DAP without negative influence on seed vigour and viability. © 2015 Society of Chemical Industry.

  8. Seedling vigor and genetic variability for rice seed, seedling emergence and seedling traits

    International Nuclear Information System (INIS)

    Ali, S.S.; Jafri, S.J.H.; Jamil, M.; Ijaz, M.

    1994-01-01

    Eleven local rice cultivars including Basmati 370 were evaluated for seedling vigor. Three groups of traits were evaluated viz; seed traits (Seed density, seed volume see weight, paddy length and grain length), seed emergence traits (emergence %, emergence index and emergence rate index), and seedling traits (fresh root length, dry root weight, emergence percentage, root length, dry root weight, seed weight and relative root weight were observed significant, respectively. Seed density, relative root weight, emergence rate index and root to shoot ratio were relatively more amenable to improvement. Relative expected genetic advance was the function of heritability and coefficient of phenotypic variability, latter being more important. (author)

  9. Detection of DNA fingerprints of cultivated rice by hybridization with a human minisatellite DNA probe

    International Nuclear Information System (INIS)

    Dallas, J.F.

    1988-01-01

    A human minisatellite DNA probe detects several restriction fragment length polymorphisms in cultivars of Asian and African rice. Certain fragments appear to be inherited in a Mendelian fashion and may represent unlinked loci. The hybridization patterns appear to be cultivar-specific and largely unchanged after the regeneration of plants from tissue culture. The results suggest that these regions of the rice genome may be used to generate cultivar-specific DNA fingerprints. The demonstration of similarity between a human minisatellite sequence and polymorphic regions in the rice genome suggests that such regions also occur in the genomes of many other plant species

  10. Production and accumulation of UV-B [ultra violet] absorbing compounds in UV-B irradiated leaves of rice, Oryza SativaL.: effects of varying UV-B doses on leaf damage, phenolic content and HPLC [high performance liquid chromatography] peak I area

    International Nuclear Information System (INIS)

    Caasi-Lit, M.T.

    2005-01-01

    The effects of varying UV-B doses on leaf damage, phenolic content and HPLC peak 1 area were studied using 65-d-old plants of the UV-B tolerant rice cultivar, M202, and the UV-B susceptible rice cultivar, Dular. Results showed that the production and accumulation of UV-B- absorbing compounds in rice leaves were affected by leaf position and levels (dose) of UV-B and time or duration of UV-B irradiation or exposure. The youngest terminal leaves showed the least damage when exposed to medium and high UV-B doses. The production of these absorptive compounds as represented by relative phenolic and HPLC peak 1 were significantly higher in younger leaves and lower in older or senescing leaves. M202 showed significantly higher amounts of peak 1 area and relative phenolic compared to UV-B susceptible rice cultivar, Dular. The results also confirmed the strong relationship of overall damage rating and area of HPLC peak 1. The development of UV-B symptoms in the susceptible cultivar was hastened when a high UV-B treatment was applied. Peak 1 area did not accumulate in the UV-B susceptible Dular at any given UV-B dose

  11. Comportamento das cultivares Cabernet Sauvignon e Syrah em diferentes porta-enxertos Yield-related performance of cv Cabernet Sauvingnon and Petite Syrah on different rootstocks

    Directory of Open Access Journals (Sweden)

    Tânia das Graças Silva Orlando

    2008-06-01

    Full Text Available As cultivares Cabernet Sauvignon e Syrah são destinadas à elaboração de vinhos tintos jovens ou de guarda bastante difundidas em diversas zonas vitivinícolas de todo o mundo. No Brasil, são utilizadas principalmente no Rio Grande do Sul e Vale do Rio São Francisco. Atualmente, produtores da região de Jundiaí, SP, têm demonstrado interesse na utilização de tais cultivares com intuito de obter vinhos de qualidade superior aos originários de cultivares americanas. Por isso, realizou-se o estudo do comportamento das cultivares Cabernet Sauvignon e Syrah em diferentes porta-enxertos, na região de Jundiaí, SP (23º06' S; 46º55' W, 715 m. Não houve influência dos diferentes porta-enxertos sobre o comportamento da cultivar Cabernet Sauvignon. O porta-enxerto IAC 571-6 'Jundiaí' tendeu a conferir colheita tardia na cultivar Syrah. Os porta-enxertos IAC 572 'Jales' e IAC 571-6 'Jundiaí' conferiram maior produção a cultivar Syrah. A cultivar Syrah apresentou-se como boa opção de plantio para obtenção de vinho de qualidade na região.Grapevines cv. Cabernet Sauvignon and Syrah are largely used for high quality vine making all around the world. In Brazil they are concentrated moreover, at the Rio Grande do Sul state and in the São Francisco Valley. Producers from Jundiaí region (São Paulo state have been interested in such cultivars for improved quality vine making as they generally use american cultivars for that propose. Aiming study the performance of cv Cabernet Sauvingnon and Syrah, cultivated over different rootstocks an experiment was conducted in the region of Jundiaí (SP (23º06' S; 46º55' W, 715 m. Results showed that there wasn't influence of different rootstocks on the performance of both analyzed cultivars. It was observed a trend of the rootstock IAC 571-6 'Jundiaí' to improve final yield of cv Syrah. The Rootstocks IAC 572 'Jales' and IAC 571-6 'Jundiaí' combined to Syrah resulted in the highest yield in the

  12. Impact of mutation breeding in rice

    International Nuclear Information System (INIS)

    Rutger, J.N.

    1992-01-01

    More cultivars have been developed in rice through the use of mutation breeding than in any other crop. Direct releases of mutants as cultivars began some 30 years ago, and now total 198 cultivars. During the last 20 years, increasing use has been made of induced mutants in cross-breeding programs, leading to 80 additional cultivars. Principal improvements through mutation breeding have been earlier maturity, short stature, and grain character modifications. Rice has been a popular subject of mutagenesis because it is the world's leading food crop, has diploid inheritance, and is highly self-pollinated. In recent years induced mutation has been exploited to develop breeding tool mutants, which are defined as mutants that in themselves may not have direct agronomic application but may be useful genetic tools for crop improvement. Examples include the eui gene, hull colour mutants, normal genetic male steriles, and environmentally sensitive genetic male steriles. The environmentally sensitive genetic male steriles, especially those in which male sterility can be turned on or off by different photoperiod lengths, show promise for simplifying hybrid rice seed production both in China and the USA. Future applications of mutation in rice include induction of unusual endosperm starch types, plant types with fewer but more productive tillers, dominant dwarfs, dominant genetic male steriles, extremely early maturing mutants, nutritional mutants, and in vitro-derived mutants for tolerance to herbicides or other growth stresses. Refs, 4 figs, 2 tabs

  13. Genetic control and combining ability of flag leaf area and relative water content traits of bread wheat cultivars under drought stress condition

    Directory of Open Access Journals (Sweden)

    Golparvar Ahmad Reza

    2013-01-01

    Full Text Available In order to compare mode of inheritance, combining ability, heterosis and gene action in genetic control of traits flag leaf area, relative water content and grain filling rate of bread wheat under drought stress, a study was conducted on 8 cultivars using of Griffing’s method2 in fixed model. Mean square of general combining ability was significant also for all traits and mean square of specific combining ability was significant also for all traits except relative water content of leaf which show importance of both additive and dominant effects of genes in heredity of these traits under stress. GCA to SCA mean square ratio was significant for none of traits. Results of this study showed that non additive effects of genes were more important than additive effect for all traits. According to results we can understand that genetic improvement of mentioned traits will have low genetic efficiency by selection from the best crosses of early generations. Then it is better to delay selection until advanced generations and increase in heritability of these traits.

  14. Cultivar identification and genetic relationship of pineapple (Ananas comosus) cultivars using SSR markers.

    Science.gov (United States)

    Lin, Y S; Kuan, C S; Weng, I S; Tsai, C C

    2015-11-25

    The genetic relationships among 27 pineapple [Ananas comosus (L.) Merr.] cultivars and lines were examined using 16 simple sequence repeat (SSR) markers. The number of alleles per locus of the SSR markers ranged from 2 to 6 (average 3.19), for a total of 51 alleles. Similarity coefficients were calculated on the basis of 51 amplified bands. A dendrogram was created according to the 16 SSR markers by the unweighted pair-group method. The banding patterns obtained from the SSR primers allowed most of the cultivars and lines to be distinguished, with the exception of vegetative clones. According to the dendrogram, the 27 pineapple cultivars and lines were clustered into three main clusters and four individual clusters. As expected, the dendrogram showed that derived cultivars and lines are closely related to their parental cultivars; the genetic relationships between pineapple cultivars agree with the genealogy of their breeding history. In addition, the analysis showed that there is no obvious correlation between SSR markers and morphological characters. In conclusion, SSR analysis is an efficient method for pineapple cultivar identification and can offer valuable informative characters to identify pineapple cultivars in Taiwan.

  15. Rice microstructure

    Science.gov (United States)

    An understanding of plant structure is desirable to obtain a clear idea of the overall impact of a crop. A mature rice plant consists of leafy components (left in the field post-harvest) and paddy rice (collected). The rice plant is supported by a hollow stem (culm) with leaf sheaths attached to nod...

  16. Discovery of global genomic re-organization based on comparison of two newly sequenced rice mitochondrial genomes with cytoplasmic male sterility-related genes

    Directory of Open Access Journals (Sweden)

    Yamada Mari

    2010-03-01

    Full Text Available Abstract Background Plant mitochondrial genomes are known for their complexity, and there is abundant evidence demonstrating that this organelle is important for plant sexual reproduction. Cytoplasmic male sterility (CMS is a phenomenon caused by incompatibility between the nucleus and mitochondria that has been discovered in various plant species. As the exact sequence of steps leading to CMS has not yet been revealed, efforts should be made to elucidate the factors underlying the mechanism of this important trait for crop breeding. Results Two CMS mitochondrial genomes, LD-CMS, derived from Oryza sativa L. ssp. indica (434,735 bp, and CW-CMS, derived from Oryza rufipogon Griff. (559,045 bp, were newly sequenced in this study. Compared to the previously sequenced Nipponbare (Oryza sativa L. ssp. japonica mitochondrial genome, the presence of 54 out of 56 protein-encoding genes (including pseudo-genes, 22 tRNA genes (including pseudo-tRNAs, and three rRNA genes was conserved. Two other genes were not present in the CW-CMS mitochondrial genome, and one of them was present as part of the newly identified chimeric ORF, CW-orf307. At least 12 genomic recombination events were predicted between the LD-CMS mitochondrial genome and Nipponbare, and 15 between the CW-CMS genome and Nipponbare, and novel genetic structures were formed by these genomic rearrangements in the two CMS lines. At least one of the genomic rearrangements was completely unique to each CMS line and not present in 69 rice cultivars or 9 accessions of O. rufipogon. Conclusion Our results demonstrate novel mitochondrial genomic rearrangements that are unique in CMS cytoplasm, and one of the genes that is unique in the CW mitochondrial genome, CW-orf307, appeared to be the candidate most likely responsible for the CW-CMS event. Genomic rearrangements were dynamic in the CMS lines in comparison with those of rice cultivars, suggesting that 'death' and possible 'birth' processes of the

  17. Patatin-related phospholipase A, pPLAIIIα, modulates the longitudinal growth of vegetative tissues and seeds in rice.

    Science.gov (United States)

    Liu, Guangmeng; Zhang, Ke; Ai, Jun; Deng, Xianjun; Hong, Yueyun; Wang, Xuemin

    2015-11-01

    Patatin-related phospholipase A (pPLA) hydrolyses glycerolipids to produce fatty acids and lysoglycerolipids. The Oryza sativa genome has 21 putative pPLAs that are grouped into five subfamilies. Overexpression of OspPLAIIIα resulted in a dwarf phenotype with decreased length of rice stems, roots, leaves, seeds, panicles, and seeds, whereas OspPLAIIIα-knockout plants had longer panicles and seeds. OspPLAIIIα-overexpressing plants were less sensitive than wild-type and knockout plants to gibberellin-promoted seedling elongation. OspPLAIIIα overexpression and knockout had an opposite effect on the expression of the growth repressor SLENDER1 in the gibberellin signalling process. OspPLAIIIα-overexpressing plants had decreased mechanical strength and cellulose content, but exhibited increases in the expression of several cellulose synthase genes. These results indicate that OspPLAIIIα plays a role in rice vegetative and reproductive growth and that the constitutive, high activity of OspPLAIIIα suppresses cell elongation. The decreased gibberellin response in overexpressing plants is probably a result of the decreased ability to make cellulose for anisotropic cell expansion. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.

  18. Effect of acetic acid on rice seeds coated with rice husk ash

    Directory of Open Access Journals (Sweden)

    Lizandro Ciciliano Tavares

    2013-06-01

    Full Text Available Flooded rice cultivation promotes anaerobic conditions, favoring the formation of short chain organic acids such as acetic acid, which may be toxic to the crop. The objective of this study was to evaluate the effect of acetic acid on rice seeds coated with rice husk ash. The experiment was arranged in a 2 x 5 x 5 factorial randomized design, with two cultivars (IRGA 424 and BRS Querência, five doses of coating material (0, 2, 3,4 e 5 g kg-1 seed and five concentrations of acetic acid (0, 3, 6, 9 and 12 mM, with 4 replications, totaling 50 treatments. The variables first count of germination, germination, shoot and root length, dry weight of shoots and roots were recorded. The results showed that coating rice seeds with rice husk ash up to 5 g kg-1 seed does not influence the performance of rice seeds of cultivars IRGA 424 and BRS Querência when exposed to concentrations of 12 mM acetic acid. The presence of acetic acid in the substrates used for seed germination reduced the vigor and viability of seeds of cultivars IRGA 424 and BRS Querência, as well as seedling development, affecting mainly the roots of BRS Querência.

  19. significance of rice sheath photosynthesis: yield determination by c ...

    African Journals Online (AJOL)

    ACSS

    1State Key Laboratory of Hybrid Rice, Hunan Hybrid Rice Research Center, Changsha 410125, P.R. China. 2School of ... for contribution rates of sheath photosynthesis to economical yield. ..... related processes during ripening in rice plants.

  20. Enhancing Contents of γ-Aminobutyric Acid (GABA) and Other Micronutrients in Dehulled Rice during Germination under Normoxic and Hypoxic Conditions.

    Science.gov (United States)

    Ding, Junzhou; Yang, Tewu; Feng, Hao; Dong, Mengyi; Slavin, Margaret; Xiong, Shanbai; Zhao, Siming

    2016-02-10

    Biofortification of staple grains with high contents of essential micronutrients is an important strategy to overcome micronutrient malnutrition. However, few attempts have targeted at γ-aminobutyric acid (GABA), a functional nutrient for aging populations. In this study, two rice cultivars, Heinuo and Xianhui 207, were used to investigate changes in GABA and other nutritional compounds of dehulled rice after germination under normoxic and hypoxic conditions. Forty-one metabolites were identified in both cultivars treated by normoxic germination, whereas the germinated dehulled rice of Heinuo and Xianhui 207 under hypoxic treatment had 43 and 41 metabolites identified, respectively. GABA increased in dehulled rice after germination, especially under hypoxia. Meanwhile, a number of other health-beneficial and/or flavor-related compounds such as lysine and d-mannose increased after the hypoxic treatment. The accumulation of GABA exhibited genotype-specific modes in both normoxic and hypoxic treatments. With regard to GABA production, Xianhui 207 was more responsive to the germination process than Heinuo, whereas Heinuo was more responsive to hypoxia than Xianhui 207. This study provides a promising approach to biofortify dehulled rice with increased GABA and other nutrients through metabolomic-based regulation.

  1. Response of Transplanted Aman Rice Varieties to Herbicides in Strip-Tilled Non-Puddled Soil

    Directory of Open Access Journals (Sweden)

    Taslima Zahan1

    2017-12-01

    Full Text Available BACKGROUND: Sensitivity of crop cultivars may vary to commonly used herbicides resulting in potential yield loss and reduce farm profit. Transplanting of rice seedlings in strip-tilled non-puddled field is a new practice for which herbicide tolerant varieties need to select. Therefore, a study was executed at the Agronomy Field Laboratory of Bangladesh Agricultural University, Mymensingh during 2013 to evaluate the response of some popular transplanted aman rice varieties to different herbicides at their recommended rate and to select most tolerant aman rice variety or varieties for strip-tilled non-puddled transplanting. METHODOLOGY: Twelve aman rice varieties (BR11, BRRI dhan33, BRRI dhan39, BRRI dhan44, BRRI dhan46, BRRI dhan49, BRRI dhan51, BRRI dhan52, BRRI dhan56, BRRI dhan57, BRRI hybrid dhan-4 and BINA dhan7 were examined in the study against six herbicides (2 pre-emergence: pyrazosulfuron-ethyl and butachlor; 1 early post-emergence: orthosulfamuron and 3 late post-emergence: acetochlor + bensulfuron methyl, butachlor + propanil and 2,4-D amine along with one untreated manually weed-free control. KEY FINDINGS: The study revealed that aman rice varieties responded differentially to different herbicides. All rice varieties performed better in pyrazosulfuron-ethyl treated plots relative to the other herbicide treated plots and even than the control plots. Pyrazosulfuron-ethyl increased grain yield of all aman rice varieties by 0.6-32.6% over control and butachlor + propanil provided increased grain yield in all rice varieties by 2.0-25.5% except BRRI hybrid dhan-4. The study also disclosed that BRRI dhan57 and BRRI hybrid dhan-4 gone through the yield loss by application of 2,4-D amine and BRRI dhan56 by application of butachlor and orthosulfamuron. Moreover, acetochlor + bensulfuron methyl produced shorter plants and caused yield loss by 7.8-27.1% in all aman rice varieties compared to the control and BRRI dhan39 was the most susceptible

  2. Altered cultivar resistance of kimchi cabbage seedlings mediated by salicylic Acid, jasmonic Acid and ethylene.

    Science.gov (United States)

    Lee, Young Hee; Kim, Sang Hee; Yun, Byung-Wook; Hong, Jeum Kyu

    2014-09-01

    Two cultivars Buram-3-ho (susceptible) and CR-Hagwang (moderate resistant) of kimchi cabbage seedlings showed differential defense responses to anthracnose (Colletotrichum higginsianum), black spot (Alternaria brassicicola) and black rot (Xanthomonas campestris pv. campestris, Xcc) diseases in our previous study. Defense-related hormones salicylic acid (SA), jasmonic acid (JA) and ethylene led to different transcriptional regulation of pathogenesis-related (PR) gene expression in both cultivars. In this study, exogenous application of SA suppressed basal defenses to C. higginsianum in the 1st leaves of the susceptible cultivar and cultivar resistance of the 2nd leaves of the resistant cultivar. SA also enhanced susceptibility of the susceptible cultivar to A. brassicicola. By contrast, SA elevated disease resistance to Xcc in the resistant cultivar, but not in the susceptible cultivar. Methyl jasmonate (MJ) treatment did not affect the disease resistance to C. higginsianum and Xcc in either cultivar, but it compromised the disease resistance to A. brassicicola in the resistant cultivar. Treatment with 1-aminocyclopropane-1-carboxylic acid (ACC) ethylene precursor did not change resistance of the either cultivar to C. higginsianum and Xcc. Effect of ACC pretreatment on the resistance to A. brassicicola was not distinguished between susceptible and resistant cultivars, because cultivar resistance of the resistant cultivar was lost by prolonged moist dark conditions. Taken together, exogenously applied SA, JA and ethylene altered defense signaling crosstalk to three diseases of anthracnose, black spot and black rot in a cultivar-dependent manner.

  3. Altered Cultivar Resistance of Kimchi Cabbage Seedlings Mediated by Salicylic Acid, Jasmonic Acid and Ethylene

    Directory of Open Access Journals (Sweden)

    Young Hee Lee

    2014-09-01

    Full Text Available Two cultivars Buram-3-ho (susceptible and CR-Hagwang (moderate resistant of kimchi cabbage seedlings showed differential defense responses to anthracnose (Colletotrichum higginsianum, black spot (Alternaria brassicicola and black rot (Xanthomonas campestris pv. campestris, Xcc diseases in our previous study. Defense-related hormones salicylic acid (SA, jasmonic acid (JA and ethylene led to different transcriptional regulation of pathogenesis-related (PR gene expression in both cultivars. In this study, exogenous application of SA suppressed basal defenses to C. higginsianum in the 1st leaves of the susceptible cultivar and cultivar resistance of the 2nd leaves of the resistant cultivar. SA also enhanced susceptibility of the susceptible cultivar to A. brassicicola. By contrast, SA elevated disease resistance to Xcc in the resistant cultivar, but not in the susceptible cultivar. Methyl jasmonate (MJ treatment did not affect the disease resistance to C. higginsianum and Xcc in either cultivar, but it compromised the disease resistance to A. brassicicola in the resistant cultivar. Treatment with 1-aminocyclopropane-1-carboxylic acid (ACC ethylene precursor did not change resistance of the either cultivar to C. higginsianum and Xcc. Effect of ACC pretreatment on the resistance to A. brassicicola was not distinguished between susceptible and resistant cultivars, because cultivar resistance of the resistant cultivar was lost by prolonged moist dark conditions. Taken together, exogenously applied SA, JA and ethylene altered defense signaling crosstalk to three diseases of anthracnose, black spot and black rot in a cultivar-dependent manner.

  4. Relative bioavailability of 13C5-folic acid in pectin-coated folate fortified rice in humans using stable isotope techniques.

    Science.gov (United States)

    de Ambrosis, A; Vishnumohan, S; Paterson, J; Haber, P; Arcot, J

    2017-01-01

    The aim of the study was to measure the relative bioavailability of labeled pteroylglutamic acid (13C5-PteGlu) from a pectin-coated fortified rice in vivo to measure any effect of the edible coating on folic acid bioavailability. Healthy volunteers (N=26) aged 18-39 years received three test meals in three randomized short-term cross-over trials: Trial 1: aqueous 400 μg 13C5-PteGlu, Trial 2: 200 g cooked white rice+400 μg 13C5-PteGlu,Trial 3: 200 g fortified cooked white rice with pectin-coated premix containing 400 μg 13C5-PteGlu. Blood samples were drawn at 0,1,2,5 and 8 h postprandial. The concentration of 13C5-5 methyl-tetrahydrofolate appearing in plasma was quantified using high performance liquid chromatography-mass spectrometry (MS)/MS. For 24 h before baseline estimation and during the area under the curve (AUC) study, the subjects were placed on a low folate diet (∼100 μg/day). The relative bioavailability of the folic acid following Trial 3 was measured by comparing the 13C5-5 methyl-tetrahydrofuran (THF) AUC with Trials 1 and 2. The bioavailability of folic acid in a pectin-coated rice premix was 68.7% (range 47-105) and 86.5% (range 65-115) in uncoated fortified rice relative to aqueous folic acid. This study is the first demonstration of the bioavailability of folate in pectin-coated fortified rice in humans.

  5. Physicochemical and antioxidative properties of black, brown and red rice varieties of northern Thailand

    Directory of Open Access Journals (Sweden)

    Noppawat Pengkumsri

    2015-06-01

    Full Text Available Rice, the seed of Oryza species, is the major cereal crop in most of the developing countries. Nearly 95% of global rice production is done in Asian countries, and about half of the world’s population consumes it. Some speciality rices are not commonly consumed. Colored rice is one of such variety. In these varieties, high amounts of anthocyanin pigment are deposited in the rice coat to form its black (also known as purple, brown and red colors. Minimum studies are there to explain the properties of these rice varieties of Thailand. Thus, the current study was aimed to assess the physicochemical and antioxidative properties of three rice varieties (Chiang Mai Black rice, Mali Red rice and Suphanburi-1 Brown rice of different cultivars of northern Thailand. Rice bran extracts of these three cultivars were prepared with different solvents (polar and non-polar for the evaluation of total phytochemical content and anti-oxidant free-radical-scavenging properties. Chiang Mai Black rice contained higher concentration of phenolic acid, flavonoids, and anthocyanins (Cyanidin 3-glucoside, peonidin 3-glucoside, cyanidin chloride. Chiang Mai Black rice is richer in free-radical-scavenging compounds and activities than the other tested varieties. Polar extractions of rice bran are high in anti-oxidative compounds and activities than non-polar extractions.

  6. Uptake, translocation and transformation of antimony in rice (Oryza sativa L.) seedlings.

    Science.gov (United States)

    Cai, Fei; Ren, Jinghua; Tao, Shu; Wang, Xilong

    2016-02-01

    Antimony (Sb), as a toxic metalloid, has been gaining increasing research concerns due mainly to its severe pollution in many places. Rice has been identified to be the dominant intake route of Sb by residents close to the Sb mining areas. A hydroponic experiment was conducted to investigate the difference in uptake, translocation and transformation of Sb in rice seedlings of four cultivars exposed to 0.2 or 1.0 mg/L of Sb(V). The results showed that mass concentration of iron plaque (mg/kg FW) formed at the root surfaces of cultivar N was the highest among all tested cultivars at both low and high exposure levels of Sb(V). The accumulated Sb concentration in iron plaque significantly increased with an increase in mass concentration of iron plaque formed at the rice root. The total amount of iron plaque (mg/pot) at rice root generally increased with increasing exposed Sb(V) concentration, which was closely associated with the increasing lipid peroxidation in roots. Concentration percentage of Sb in rice root significantly reduced as the corresponding value in the iron plaque increased, suggesting that iron plaque formation strongly suppressed uptake of Sb by rice root. Sb concentration in rice tissues followed an order: root > stem, leaf. The japonica rice (cultivars N and Z) exhibited a stronger translocation tendency of Sb from root to stem than indica hybrid rice (cultivars F and G). Translocation of Sb from root of cultivar F to its stem and leaf was sharply enhanced with increasing Sb exposure concentration. Sb(V) could be reduced to Sb(III) in rice tissues, especially in stems (10-26% of the total Sb). For the sake of food safety, the difference in uptake, translocation and transformation of Sb in rice species planted in Sb-contaminated soils should be taken into consideration. Copyright © 2015 Elsevier Ltd. All rights reserved.

  7. Combination of mass spectrometry-based targeted lipidomics and supervised machine learning algorithms in detecting adulterated admixtures of white rice.

    Science.gov (United States)

    Lim, Dong Kyu; Long, Nguyen Phuoc; Mo, Changyeun; Dong, Ziyuan; Cui, Lingmei; Kim, Giyoung; Kwon, Sung Won

    2017-10-01

    The mixing of extraneous ingredients with original products is a common adulteration practice in food and herbal medicines. In particular, authenticity of white rice and its corresponding blended products has become a key issue in food industry. Accordingly, our current study aimed to develop and evaluate a novel discrimination method by combining targeted lipidomics with powerful supervised learning methods, and eventually introduce a platform to verify the authenticity of white rice. A total of 30 cultivars were collected, and 330 representative samples of white rice from Korea and China as well as seven mixing ratios were examined. Random forests (RF), support vector machines (SVM) with a radial basis function kernel, C5.0, model averaged neural network, and k-nearest neighbor classifiers were used for the classification. We achieved desired results, and the classifiers effectively differentiated white rice from Korea to blended samples with high prediction accuracy for the contamination ratio as low as five percent. In addition, RF and SVM classifiers were generally superior to and more robust than the other techniques. Our approach demonstrated that the relative differences in lysoGPLs can be successfully utilized to detect the adulterated mixing of white rice originating from different countries. In conclusion, the present study introduces a novel and high-throughput platform that can be applied to authenticate adulterated admixtures from original white rice samples. Copyright © 2017 Elsevier Ltd. All rights reserved.

  8. Cytomorphological characterization of tea cultivars

    International Nuclear Information System (INIS)

    Rahman, H.; Khalil, I.H.; Shah, S.M.A.; Khanzada, T.Z.; Abbasi, F.M; Ahmad, H.; Shah, Z.

    2010-01-01

    Cytomorphological characterization was performed on tea cultivars, three each of Camellia sinensis and Camellia assamica species. For plant morphological study, one and a half year old healthy shoots were obtained from the selected mother bushes of the six tea cultivars. The field experiment conducted in randomized complete block design having four replications was aimed at evaluating plant height, number of leaves plant-l, number of branches plant-l, number of flowers plant-1, fresh and dry leaf weight plant-I. The data indicated significant difference between the two species with narrow leaved cultivars having increased plant height, number of leaves and branches plant-I than the broad leaved cultivars, but less number of flowers plant-l, fresh and dry leaf weight. Karyotype analysis indicated that both the groups are diploid with 2n = 30. On the basis of chromosome morphology, C. assamica had larger chromosomes (3-10.5 mu m) as compared to C. sinensis (3.9-8 mu m). C. assamica has relatively advanced features as compared to C. sinensis. However, both the groups possessed mostly median to sub-median centromeres with no secondary constrictions which possibly indicates that little or no evolutionary changes have taken place in tea and that the karyotype is still at a primitive stage, with C. sinensis being more primitive than C. assamica. Our results suggest that both the groups are different from each other in morphological as well as cytological attributes and could therefore generate more germplasm if the two species could be involved in tea breeding programs. (author)

  9. Uptake, translocation and transformation of antimony in rice (Oryza sativa L.) seedlings

    International Nuclear Information System (INIS)

    Cai, Fei; Ren, Jinghua; Tao, Shu; Wang, Xilong

    2016-01-01

    Antimony (Sb), as a toxic metalloid, has been gaining increasing research concerns due mainly to its severe pollution in many places. Rice has been identified to be the dominant intake route of Sb by residents close to the Sb mining areas. A hydroponic experiment was conducted to investigate the difference in uptake, translocation and transformation of Sb in rice seedlings of four cultivars exposed to 0.2 or 1.0 mg/L of Sb(V). The results showed that mass concentration of iron plaque (mg/kg FW) formed at the root surfaces of cultivar N was the highest among all tested cultivars at both low and high exposure levels of Sb(V). The accumulated Sb concentration in iron plaque significantly increased with an increase in mass concentration of iron plaque formed at the rice root. The total amount of iron plaque (mg/pot) at rice root generally increased with increasing exposed Sb(V) concentration, which was closely associated with the increasing lipid peroxidation in roots. Concentration percentage of Sb in rice root significantly reduced as the corresponding value in the iron plaque increased, suggesting that iron plaque formation strongly suppressed uptake of Sb by rice root. Sb concentration in rice tissues followed an order: root > stem, leaf. The japonica rice (cultivars N and Z) exhibited a stronger translocation tendency of Sb from root to stem than indica hybrid rice (cultivars F and G). Translocation of Sb from root of cultivar F to its stem and leaf was sharply enhanced with increasing Sb exposure concentration. Sb(V) could be reduced to Sb(III) in rice tissues, especially in stems (10–26% of the total Sb). For the sake of food safety, the difference in uptake, translocation and transformation of Sb in rice species planted in Sb-contaminated soils should be taken into consideration. - Highlights: • Sb(V) caused lipid peroxidation and increased iron plaque formation at root surface. • The iron plaque may suppress uptake of Sb by rice. • Cultivars

  10. In vitro solubility of calcium, iron and zinc in relation to phytic acid levels in rice-based consumer products in China

    NARCIS (Netherlands)

    Liang, J.; Han, B.Z.; Nout, M.J.R.; Hamer, R.J.

    2010-01-01

    In vitro solubility of calcium, iron and zinc in relation to phytic acid (PA) levels in 30 commercial rice-based foods from China was studied. Solubility of minerals and molar ratios of PA to minerals varied with degrees of processing. In primary products, [PA]/[Ca] values were less than 5 and

  11. Linkage relationship between semi-dwarfing gene sd-1 and gene for grain shattering in rice

    International Nuclear Information System (INIS)

    Oba, S.; Kikuchi, F.

    1990-01-01

    Full text: Most semidwarf rice cultivars carry the same gene sd-1. We observed an association between semi-dwarfness and grain shattering in isogenic lines carrying sd-1 from different sources in the background of the Japanese tall cultivar 'Norin 28'. The shattering was found to be caused by a single recessive gene, sh-2, linked to the sd-1 locus. The shattering gene seems to have been transmitted to many semi-dwarf cultivars together with sd-1, not only from 'Dee-geo-woo-gen' but also from the indica-cultivar 'Ai-jio-nan-te' and the japonica cultivar 'Shiranui'. (author)

  12. Effects of Residue Management on Decomposition in Irrigated Rice Fields Are Not Related to Changes in the Decomposer Community.

    Directory of Open Access Journals (Sweden)

    Anja Schmidt

    Full Text Available Decomposers provide an essential ecosystem service that contributes to sustainable production in rice ecosystems by driving the release of nutrients from organic crop residues. During a single rice crop cycle we examined the effects of four different crop residue management practices (rice straw or ash of burned straw scattered on the soil surface or incorporated into the soil on rice straw decomposition and on the abundance of aquatic and soil-dwelling invertebrates. Mass loss of rice straw in litterbags of two different mesh sizes that either prevented or allowed access of meso- and macro-invertebrates was used as a proxy for decomposition rates. Invertebrates significantly increased total loss of litter mass by up to 30%. Initially, the contribution of invertebrates to decomposition was significantly smaller in plots with rice straw scattered on the soil surface; however, this effect disappeared later in the season. We found no significant responses in microbial decomposition rates to management practices. The abundance of aquatic fauna was higher in fields with rice straw amendment, whereas the abundance of soil fauna fluctuated considerably. There was a clear separation between the overall invertebrate community structure in response to the ash and straw treatments. However, we found no correlation between litter mass loss and abundances of various lineages of invertebrates. Our results indicate that invertebrates can contribute to soil fertility in irrigated paddy fields by decomposing rice straw, and that their abundance as well as efficiency in decomposition may be promoted by crop residue management practices.

  13. Effects of Residue Management on Decomposition in Irrigated Rice Fields Are Not Related to Changes in the Decomposer Community.

    Science.gov (United States)

    Schmidt, Anja; John, Katharina; Arida, Gertrudo; Auge, Harald; Brandl, Roland; Horgan, Finbarr G; Hotes, Stefan; Marquez, Leonardo; Radermacher, Nico; Settele, Josef; Wolters, Volkmar; Schädler, Martin

    2015-01-01

    Decomposers provide an essential ecosystem service that contributes to sustainable production in rice ecosystems by driving the release of nutrients from organic crop residues. During a single rice crop cycle we examined the effects of four different crop residue management practices (rice straw or ash of burned straw scattered on the soil surface or incorporated into the soil) on rice straw decomposition and on the abundance of aquatic and soil-dwelling invertebrates. Mass loss of rice straw in litterbags of two different mesh sizes that either prevented or allowed access of meso- and macro-invertebrates was used as a proxy for decomposition rates. Invertebrates significantly increased total loss of litter mass by up to 30%. Initially, the contribution of invertebrates to decomposition was significantly smaller in plots with rice straw scattered on the soil surface; however, this effect disappeared later in the season. We found no significant responses in microbial decomposition rates to management practices. The abundance of aquatic fauna was higher in fields with rice straw amendment, whereas the abundance of soil fauna fluctuated considerably. There was a clear separation between the overall invertebrate community structure in response to the ash and straw treatments. However, we found no correlation between litter mass loss and abundances of various lineages of invertebrates. Our results indicate that invertebrates can contribute to soil fertility in irrigated paddy fields by decomposing rice straw, and that their abundance as well as efficiency in decomposition may be promoted by crop residue management practices.

  14. Stomatal conductance, mesophyll conductance, and trans piration efficiency in relation to leaf anatomy in rice and wheat genotypes under drought

    NARCIS (Netherlands)

    Ouyang, Wenjing; Struik, Paul C.; Yin, Xinyou; Yang, Jianchang

    2017-01-01

    Increasing leaf transpiration efficiency (TE) may provide leads for growing rice like dryland cereals such as wheat (Triticum aestivum). To explore avenues for improving TE in rice, variations in stomatal conductance (g s) and mesophyll conductance (g m) and their anatomical determinants were

  15. Massive gene losses in Asian cultivated rice unveiled by comparative genome analysis

    Directory of Open Access Journals (Sweden)

    Itoh Takeshi

    2010-02-01

    Full Text Available Abstract Background Rice is one of the most important food crops in the world. With increasing world demand for food crops, there is an urgent need to develop new cultivars that have enhanced performance with regard to yield, disease resistance, and so on. Wild rice is expected to provide useful genetic resources that could improve the present cultivated species. However, the quantity and quality of these unexplored resources remain unclear. Recent accumulation of the genomic information of both cultivated and wild rice species allows for their comparison at the molecular level. Here, we compared the genome sequence of Oryza sativa ssp. japonica with sets of bacterial artificial chromosome end sequences (BESs from two wild rice species, O. rufipogon and O. nivara, and an African rice species, O. glaberrima. Results We found that about four to five percent of the BESs of the two wild rice species and about seven percent of the African rice could not be mapped to the japonica genome, suggesting that a substantial number of genes have been lost in the japonica rice lineage; however, their close relatives still possess their counterpart genes. We estimated that during evolution, O. sativa has lost at least one thousand genes that are still preserved in the genomes of the other species. In addition, our BLASTX searches against the non-redundant protein sequence database showed that disease resistance-related proteins were significantly overrepresented in the close relative-specific genomic portions. In total, 235 unmapped BESs of the three relatives matched 83 non-redundant proteins that contained a disease resistance protein domain, most of which corresponded to an NBS-LRR domain. Conclusion We found that the O. sativa lineage appears to have recently experienced massive gene losses following divergence from its wild ancestor. Our results imply that the domestication process accelerated large-scale genomic deletions in the lineage of Asian

  16. Elucidation of rice rhizosphere metagenome in relation to methane and nitrogen metabolism under elevated carbon dioxide and temperature using whole genome metagenomic approach.

    Science.gov (United States)

    Bhattacharyya, P; Roy, K S; Das, M; Ray, S; Balachandar, D; Karthikeyan, S; Nayak, A K; Mohapatra, T

    2016-01-15

    Carbon (C) and nitrogen (N) mineralization is one of the key processes of biogeochemical cycling in terrestrial ecosystem in general and rice ecology in particular. Rice rhizosphere is a rich niche of microbial diversity influenced by change in atmospheric temperature and concentration of carbon dioxide (CO2). Structural changes in microbial communities in rhizosphere influence the nutrient cycling. In the present study, the bacterial diversity and population dynamics were studied under ambient CO2 (a-CO2) and elevated CO2+temperature (e-CO2T) in lowland rice rhizosphere using whole genome metagenomic approach. The whole genome metagenomic sequence data of lowland rice exhibited the dominance of bacterial communities including Proteobacteria, Firmicutes, Acidobacteria, Actinobacteria and Planctomycetes. Interestingly, four genera related to methane production namely, Methanobacterium, Methanosphaera, Methanothermus and Methanothermococcus were absent in a-CO2 but noticed under e-CO2T. The acetoclastic pathway was found as the predominant pathway for methanogenesis, whereas, the serine pathway was found as the principal metabolic pathway for CH4 oxidation in lowland rice. The abundances of reads of enzymes in the acetoclastic methanogenesis pathway and serine pathways of methanotrophy were much higher in e-CO2T (328 and 182, respectively) as compared with a-CO2 (118 and 98, respectively). Rice rhizosphere showed higher structural diversities and functional activities in relation to N metabolism involving nitrogen fixation, assimilatory and dissimilatory nitrate reduction and denitrification under e-CO2T than that of a-CO2. Among the three pathways of N metabolism, dissimilarity pathways were predominant in lowland rice rhizosphere and more so under e-CO2T. Consequently, under e-CO2T, CH4 emission, microbial biomass nitrogen (MBN) and dehydrogenase activities were 45%, 20% and 35% higher than a-CO2, respectively. Holistically, a high bacterial diversity and

  17. Association between sequence variants in panicle development genes and the number of spikelets per panicle in rice.

    Science.gov (United States)

    Jang, Su; Lee, Yunjoo; Lee, Gileung; Seo, Jeonghwan; Lee, Dongryung; Yu, Yoye; Chin, Joong Hyoun; Koh, Hee-Jong

    2018-01-15

    Balancing panicle-related traits such as panicle length and the numbers of primary and secondary branches per panicle, is key to improving the number of spikelets per panicle in rice. Identifying genetic information contributes to a broader understanding of the roles of gene and provides candidate alleles for use as DNA markers. Discovering relations between panicle-related traits and sequence variants allows opportunity for molecular application in rice breeding to improve the number of spikelets per panicle. In total, 142 polymorphic sites, which constructed 58 haplotypes, were detected in coding regions of ten panicle development gene and 35 sequence variants in six genes were significantly associated with panicle-related traits. Rice cultivars were clustered according to their sequence variant profiles. One of the four resultant clusters, which contained only indica and tong-il varieties, exhibited the largest average number of favorable alleles and highest average number of spikelets per panicle, suggesting that the favorable allele combination found in this cluster was beneficial in increasing the number of spikelets per panicle. Favorable alleles identified in this study can be used to develop functional markers for rice breeding programs. Furthermore, stacking several favorable alleles has the potential to substantially improve the number of spikelets per panicle in rice.

  18. Two novel transcriptional regulators are essential for infection-related morphogenesis and pathogenicity of the rice blast fungus Magnaporthe oryzae.

    Directory of Open Access Journals (Sweden)

    Xia Yan

    2011-12-01

    Full Text Available The cyclic AMP-dependent protein kinase A signaling pathway plays a major role in regulating plant infection by the rice blast fungus Magnaporthe oryzae. Here, we report the identification of two novel genes, MoSOM1 and MoCDTF1, which were discovered in an insertional mutagenesis screen for non-pathogenic mutants of M. oryzae. MoSOM1 or MoCDTF1 are both necessary for development of spores and appressoria by M. oryzae and play roles in cell wall differentiation, regulating melanin pigmentation and cell surface hydrophobicity during spore formation. MoSom1 strongly interacts with MoStu1 (Mstu1, an APSES transcription factor protein, and with MoCdtf1, while also interacting more weakly with the catalytic subunit of protein kinase A (CpkA in yeast two hybrid assays. Furthermore, the expression levels of MoSOM1 and MoCDTF1 were significantly reduced in both Δmac1 and ΔcpkA mutants, consistent with regulation by the cAMP/PKA signaling pathway. MoSom1-GFP and MoCdtf1-GFP fusion proteins localized to the nucleus of fungal cells. Site-directed mutagenesis confirmed that nuclear localization signal sequences in MoSom1 and MoCdtf1 are essential for their sub-cellular localization and biological functions. Transcriptional profiling revealed major changes in gene expression associated with loss of MoSOM1 during infection-related development. We conclude that MoSom1 and MoCdtf1 functions downstream of the cAMP/PKA signaling pathway and are novel transcriptional regulators associated with cellular differentiation during plant infection by the rice blast fungus.

  19. Effect of Drought Stress on Antioxidant Enzymes and Cell Death Related Traits in Resistant and Susceptible Wheat Cultivars at Grain Filling Stage

    Directory of Open Access Journals (Sweden)

    H. Hasheminasab

    2013-10-01

    Full Text Available Drought is one of the major factors limiting crop production in Iran. Twenty Iranian wheat cultivars with wide range of sensitivity to drought, including 18 varieties of bread wheat and two varieties of durum wheat were used in two separate field experiments in 2009-2010 at the Experimental Station of College of Agricultural in Shiraz University. Each experiment was conducted as a randomized complete block design with three replications. The moisture level in one of the experiments was optimum (100% field capacity while the second experiment was conducted under drought stress (45% field capacity. Several biochemical components including antioxidant enzymes and hydrogen peroxide and some physiological traits were analyzed in the two conditions. Drought stress significantly increased antioxidant activity at the grain filling stage. Superoxide dismutase activity showed the highest increase. Lipid peroxidation, hydrogen peroxide, electrolyte leakage and cell death increased significantly under drought condition, however membrane stability index decreased. Resistant cultivars showed the highest antioxidant activity and the lowest lipid peroxidation, hydrogen peroxide, and electrolyte leakage. This trend was reversed in the susceptible cultivars. Peroxidase and superoxide dismutase had a significant correlation with yield stability index. Hydrogen peroxide and cell membrane stability indices showed the highest correlation with yield stability index. Also Pishtaz and Alamut were selected respectively as the most resistance and susceptible cultivars.

  20. Rice methylmercury exposure and mitigation: a comprehensive review.

    Science.gov (United States)

    Rothenberg, Sarah E; Windham-Myers, Lisamarie; Creswell, Joel E

    2014-08-01

    Rice cultivation practices from field preparation to post-harvest transform rice paddies into hot spots for microbial mercury methylation, converting less-toxic inorganic mercury to more-toxic methylmercury, which is likely translocated to rice grain. This review includes 51 studies reporting rice total mercury and/or methylmercury concentrations, based on rice (Orzya sativa) cultivated or purchased in 15 countries. Not surprisingly, both rice total mercury and methylmercury levels were significantly higher in polluted sites compared to non-polluted sites (Wilcoxon rank sum, p<0.001). However, rice percent methylmercury (of total mercury) did not differ statistically between polluted and non-polluted sites (Wilcoxon rank sum, p=0.35), suggesting comparable mercury methylation rates in paddy soil across these sites and/or similar accumulation of mercury species for these rice cultivars. Studies characterizing the effects of rice cultivation under more aerobic conditions were reviewed to determine the mitigation potential of this practice. Rice management practices utilizing alternating wetting and drying (instead of continuous flooding) caused soil methylmercury levels to spike, resulting in a strong methylmercury pulse after fields were dried and reflooded; however, it is uncertain whether this led to increased translocation of methylmercury from paddy soil to rice grain. Due to the potential health risks, it is advisable to investigate this issue further, and to develop separate water management strategies for mercury polluted and non-polluted sites, in order to minimize methylmercury exposure through rice ingestion. Copyright © 2014 Elsevier Inc. All rights reserved.

  1. The effects of chilling stress after anthesis on the physicochemical properties of rice (Oryza sativa L) starch.

    Science.gov (United States)

    Zhu, Dawei; Wei, Haiyan; Guo, Baowei; Dai, Qigen; Wei, Cunxu; Gao, Hui; Hu, Yajie; Cui, Peiyuan; Li, Min; Huo, Zhongyang; Xu, Ke; Zhang, Hongcheng

    2017-12-15

    This study investigates the effect of chilling stress, over a period of three days after anthesis, on the physicochemical properties of starches derived from six rice cultivars. Chilling stress significantly affected the grain characteristics and physicochemical properties of rice starches, except for those of two varieties, NJ 9108 and ZD 18. In the other four rice cultivars subjected to chilling stress, the content of medium, and large sized granules showed a decrease, and an increase, respectively. Amylose content increased as a result of chilling stress, thereby resulting in starch with a lower swelling power, water solubility, and higher retrogradation enthalpy and gelatinization temperature. Chilling stress led to deterioration of cooked rice quality as determined by the pasting properties of starch. This study indicated that among the cultivars studied, the two rice varieties most resistant to chilling stress after rice anthesis were NJ 9108 and ZD 18. Copyright © 2017 Elsevier Ltd. All rights reserved.

  2. Combining ability analysis for yield and related traits in basmati rice (oryza sativa L.)

    International Nuclear Information System (INIS)

    Saleem, M.Y.; Haq, M.A.; Mirza, J.I.

    2010-01-01

    Line X tester experiment was conducted to evaluate the performance of 27 F1 hybrids along with 12 parents in Basmati rice. Analysis of variance revealed highly significant differences among treatments, parents, parents vs. crosses and crosses for number of tillers per plant, panicle length, number of grains per panicle, fertility percentage, 1000-grain weight and yield per plant. Lines were significant for number of tillers per plant, number of grains per panicle and 1000-grain weight while testers and lines X testers were significant for all the traits. The estimates of variance of specific combining ability effects, ratio of variance of general combining ability to specific combining ability and degree of dominance indicated preponderance of non-additive gene effects for each trait. On over all basis, role of testers in the expression of most of the yield components was more than lines and line X tester interaction. However, line X tester interaction contributed more than lines and testers for yield per plant. Three lines viz., Basmati 2000, Super Basmati and Kashmir Basmati and one tester Basmati-385 were identified as good general combiners based on their mean performance and GCA effects for yield and its various traits. Hybrids like Basmati Pak X Basmati-385, Super Basmati X Basmati-385, DM-107-4 X Basmati-385, Basmati 2000 X EL-30- 2-1, Basmati 2000 X DM-25, DM-16-5-1 X Basmati-385 and Kashmir Basmati X DM-25 showed high mean performance, SCA effects and heterobeltiosis for grain yield and are proposed for heterosis breeding. (author)

  3. analysis of the productivity of upland rice and cover crops in relay ...

    African Journals Online (AJOL)

    AISA

    system will be identified. MATERIALS AND METHODS. FIELD EXPERIMENT. Field experiments, comprising monocultures of two rice cultivars, two cover crop ..... Value of SLAnew of the cultivars fluctuated around 23 m2 kg-1, with the values for V4 slightly higher than for WAB56-50 during the first part of development (Table ...

  4. Pessegueiro: cultivar BRS kampai

    Directory of Open Access Journals (Sweden)

    Maria do Carmo Bassols Raseira

    2010-12-01

    Full Text Available RESUMO O programa de Melhoramento Genético de Pessegueiros da Embrapa Clima Temperado tem, entre seus objetivos, a obtenção de cultivares produtoras de frutas para consumo in natura, com características que satisfaçam às exigências dos consumidores. Alguns dos grandes centros consumidores, como é o caso de São Paulo e Curitiba, preferem pêssegos de polpa branca e sabor doce. A cultivar BRS Kampai, obtida de um cruzamento entre 'Chimarrita' e 'Flordaprince', alia a baixa necessidade em frio, o que é uma vantagem em regiões subtropicais, à boa aparência, com sabor superior a qualquer um dos parentais. A colheita dos frutos desta cultivar inicia-se geralmente, em meados de novembro, em Pelotas-RS (em Atibaia, São Paulo, inicia-se na segunda quinzena de outubro, poucos dias antes das cultivares Rubimel (polpa amarela e Premier (polpa branca, sendo ótima substituta para esta última.

  5. Dissecting rice polyamine metabolism under controlled long-term drought stress.

    Directory of Open Access Journals (Sweden)

    Phuc Thi Do

    Full Text Available A selection of 21 rice cultivars (Oryza sativa L. ssp. indica and japonica was characterized under moderate long-term drought stress by comprehensive physiological analyses and determination of the contents of polyamines and selected metabolites directly related to polyamine metabolism. To investigate the potential regulation of polyamine biosynthesis at the transcriptional level, the expression of 21 genes encoding enzymes involved in these pathways were analyzed by qRT-PCR. Analysis of the genomic loci revealed that 11 of these genes were located in drought-related QTL regions, in agreement with a proposed role of polyamine metabolism in rice drought tolerance. The cultivars differed widely in their drought tolerance and parameters such as biomass and photosynthetic quantum yield were significantly affected by drought treatment. Under optimal irrigation free putrescine was the predominant polyamine followed by free spermidine and spermine. When exposed to drought putrescine levels decreased markedly and spermine became predominant in all cultivars. There were no correlations between polyamine contents and drought tolerance. GC-MS analysis revealed drought-induced changes of the levels of ornithine/arginine (substrate, substrates of polyamine synthesis, proline, product of a competing pathway and GABA, a potential degradation product. Gene expression analysis indicated that ADC-dependent polyamine biosynthesis responded much more strongly to drought than the ODC-dependent pathway. Nevertheless the fold change in transcript abundance of ODC1 under drought stress was linearly correlated with the drought tolerance of the cultivars. Combining metabolite and gene expression data, we propose a model of the coordinate adjustment of polyamine biosynthesis for the accumulation of spermine under drought conditions.

  6. UV-irradiation enhances rice allelopathic potential in rhizosphere soil

    DEFF Research Database (Denmark)

    Mahmood, Khalid; Khan, Muhammad Bismillah; Song, Yuan Yuan

    2013-01-01

    Ultraviolet-B radiation is rising continuously due to stratospheric ozone depletion over temperate latitudes. This study investigated effects of UV exposure on rice allelopathic potentials. For this purpose, two rice (Oryza sativa L.) cultivars BR-41 (high allelopathic = able to inhibit neighboring...... grass and lettuce). These bioassays showed significant inhibition in lettuce and barnyard growth after UV in both rice cultivars. Interestingly, Huajingxian, which did not exhibit allelopathic potential in absence of UV showed significant inhibition after UV exposure. Phenolics, enzymes activities...... and genes responsible for biosynthesis of allelopathic compounds were examined after UV exposure. Phenolic compounds accumulated in rice leaves were quantified through HPLC analysis. They were significantly higher in BR-41 leaves after UV exposure. Enzyme activities (PAL and C4H) were significantly higher...

  7. Isotopic tracer studies to evaluate relative efficiency of different forms of P for growing rice on different soil types

    Energy Technology Data Exchange (ETDEWEB)

    Dash, R N; Mohanty, S K; Patnaik, S [Central Rice Research Inst., Cuttack (India)

    1977-12-01

    The relative efficiency of different forms of P in relation to their time of application for growing rice on different soil types has been studied by using /sup 32/P tagged mono-, di-, and tri-calcium phosphate, ammonium nitrate phosphate containing all the P in the citrate-soluble form and potassium meta-phosphate. P-deficient acid laterite soil from Burdwan, red loam soil from Peramanpur and calcareous black soil from Hyderabad were used in the study. The different P forms were found to be compatible in the acid, red and laterite soils when the phosphorus forms were primed to moist acid soils 2 weeks prior to flooding. On application at flooding, fertilizers containing citrate-soluble phosphate were found to be less effective as compared to those containing water-soluble phosphate. In the calcareous black soil, however, the fertilizers, containing insoluble or citrate-soluble phosphates were not as efficient as the water-soluble forms, possibly because of lack of dissolution process. Potassium meta-phosphate was found to be effective in all the soil types whether applied at flooding or primed to the moist soil.

  8. Isotopic tracer studies to evaluate relative efficiency of different forms of P for growing rice on different soil types

    International Nuclear Information System (INIS)

    Dash, R.N.; Mohanty, S.K.; Patnaik, S.

    1977-01-01

    The relative efficiency of different forms of P in relation to their time of application for growing rice on different soil types has been studied by using 32 P tagged mono-, di-, and tri-calcium phosphate, ammonium nitrate phosphate containing all the P in the citrate-soluble form and potassium meta-phosphate. P-deficient acid laterite soil from Burdwan, red loam soil from Peramanpur and calcareous black soil from Hyderabad were used in the study. The different P forms were found to be compatible in the acid, red and laterite soils when the phosphorus forms were primed to moist acid soils 2 weeks prior to flooding. On application at flooding, fertilizers containing citrate-soluble phosphate were found to be less effective as compared to those containing water-soluble phosphate. In the calcareous black soil, however, the fertilizers, containing insoluble or citrate-soluble phosphates were not as efficient as the water-soluble forms, possibly because of lack of dissolution process. Potassium meta-phosphate was found to be effective in all the soil types whether applied at flooding or primed to the moist soil. (M.G.B.)

  9. Evaluation of duck efficiency as a biocontrol agent on weed density and diversity in rice-duck farming (Oryza sativa L.

    Directory of Open Access Journals (Sweden)

    M. Mohammadi

    2016-05-01

    Full Text Available In order to evaluate the effect of ducks number on weeds diversity and density in paddy fields, an experiment was conducted at Sari Agricultural Sciences and Natural Resource University during growing season of 2011-2012. Experiment was arranged in split plot based on complete randomized block design with four replications. Main factors were duck number at three levels (consisting of control, 400 and 800 ducks.ha-1 and sub plots were three contrast cultivars (including Tarom as a traditional, and Shirodi and Ghaem as improved cultivars. Results of ANOVA showed highly significant differences between ducks, cultivars and ducks × cultivar interaction in terms of weeds density including nutsedge (Cyperus spp. L., common Water-plantain (Alisma plantago-aquatica L., barnyard grass (Echinochloa crus-galli L., duckweed (Lemna minor L., azolla (Azolla pinata R.Br. and paddy yield. Accordingly, the lowest weed density and diversity were recorded at 800 and 400 ducks.ha-1, respectively. Among rice cultivars Tarom and Ghaem had the minimum and the maximum weeds density and diversity. The highest nutsedge density (67 plant.m-2 was related to Ghaem cultivar in control (without duck plots as much as 97% higher than 800 ducks.ha-1. Maximum paddy yield was observed in 800 ducks.ha-1 in Shirodi (5.3 t.ha-1, Ghaem (4.3 t.ha-1 and Tarom (3.6 t.ha-1 as much as 23, 7 and 20% higher than those cultivars in 400 ducks.ha-1, respectively. Finally, in the current research conditions using 800 ducks.ha-1and Tarom cultivar resulted the best performance because of the lowest weed diversity and density as compared to other treatments.

  10. Analytical traceability of melon (Cucumis melo var reticulatus): proximate composition, bioactive compounds, and antioxidant capacity in relation to cultivar, plant physiology state, and seasonal variability.

    Science.gov (United States)

    Maietti, Annalisa; Tedeschi, Paola; Stagno, Caterina; Bordiga, Matteo; Travaglia, Fabiano; Locatelli, Monica; Arlorio, Marco; Brandolini, Vincenzo

    2012-06-01

    Two morphologically different cultivars of Italian melons (Baggio and Giusto) were characterized considering samples harvested in different times, at the beginning (BPP) and at the end of the physiological plant production period (EPP). Proximate composition, protein, minerals, pH, phenolic content, antioxidant capacity, ascorbic acid, carotenoids, condensed tannins, and flavonoids were measured, showing a significant decrease in EPP samples (phenolics, antioxidant capacity, condensed tannins, and flavonoids); ascorbic acid decreased in Giusto cv, carotenoids in Baggio cv. Mineral content increased in either the cultivars (EPP samples). Year-to-year difference was significantly highlighted; the plant growing cycle significantly affected the chemotype. Despite these effects, the Principal Component Analysis (PCA) permitted the discrimination of Baggio from Giusto cv, and the discrimination of BPP from EPP samples as well. © 2012 Institute of Food Technologists®

  11. Genetic diversity associated with conservation of endangered Dongxiang wild rice (Oryza rufipogon)

    Science.gov (United States)

    The wild progenitor species (Oryza rufipogon) of Asian cultivated rice (O. sativa) is located in Dongxiang county, China where it is considered the northernmost range worldwide. Nine ex situ and three in situ populations of the Dongxiang wild rice (DXWR) and four groups of modern cultivars were geno...

  12. Disentangling the effect of environmental factors on yield and nitrogen uptake of irrigated rice in Asia

    NARCIS (Netherlands)

    Jing, Q.; Bouman, B.A.M.; Keulen, van H.; Hengsdijk, H.; Cao, W.; Dai, T.

    2008-01-01

    Rice yield is the result of the interaction between genotype (cultivar characteristics), environment (climate and soil conditions), and management. Few studies have attempted to isolate the contribution of each of these factors. Here the rice growth model ORYZA2000 was used to analyse the variation

  13. Polishing and parboiling effect on the nutritional and technological properties of pigmented rice

    Science.gov (United States)

    This study aims to evaluate the effects of polishing and parboiling on proximate composition, structure, phenolic compounds, antioxidant activity, cooking time and hardness of IAC-600 black rice cultivar and MPB-10 red rice lineage. Proximate analysis and light micrographs revealed higher migration ...

  14. Effects of White Rice, Brown Rice and Germinated Brown Rice on Antioxidant Status of Type 2 Diabetic Rats

    OpenAIRE

    Imam, Mustapha Umar; Musa, Siti Nor Asma; Azmi, Nur Hanisah; Ismail, Maznah

    2012-01-01

    Oxidative stress is implicated in the pathogenesis of diabetic complications, and can be increased by diet like white rice (WR). Though brown rice (BR) and germinated brown rice (GBR) have high antioxidant potentials as a result of their bioactive compounds, reports of their effects on oxidative stress-related conditions such as type 2 diabetes are lacking. We hypothesized therefore that if BR and GBR were to improve antioxidant status, they would be better for rice consuming populations inst...

  15. Super Rice Cropping Will Enhance Rice Yield and Reduce CH4 Emission: A Case Study in Nanjing, China

    Directory of Open Access Journals (Sweden)

    Yu JIANG

    2013-11-01

    Full Text Available A pot experiment was performed to learn the differences in plant productivity and CH4 emission between two rice cultivars, super rice variety Ningjing 1 and traditional variety Zhendao 11, which were currently commercially applied in Nanjing, China. Similar seasonal changes of CH4 emission fluxes and soil solution CH4 contents were found between the tested cultivars. Although there was no significant difference in plant biomass production between the cultivars, the grain yield of Ningjing 1 was significantly higher by 35.0% (P < 0.05 than that of Zhendao 11, whereas the total CH4 emission from Ningjing 1 was 35.2% lower (P < 0.05. The main difference in the amounts of CH4 emission between the cultivars occurred in the period from the tillering stage to the heading stage. The biomass-scaled and yield-scaled CH4 emissions were respectively 3.8 and 5.2 mg/g for Ningjing 1, significantly lower than those for Zhendao 11 (7.4 and 12.8 mg/g, respectively. According to the relationships between the plant growth characteristics and the CH4 emission, a stronger root system contributed mainly to the lower CH4 emission of Ningjing 1, as compared with Zhendao 11. Our results demonstrated that super rice has advantages not only in grain productivity but also in CH4 emission mitigation. Further expansion of super rice cropping will enhance rice yield and reduce greenhouse gas emission in China.

  16. Asian wild rice is a hybrid swarm with extensive gene flow and feralization from domesticated rice.

    Science.gov (United States)

    Wang, Hongru; Vieira, Filipe G; Crawford, Jacob E; Chu, Chengcai; Nielsen, Rasmus

    2017-06-01

    The domestication history of rice remains controversial, with multiple studies reaching different conclusions regarding its origin(s). These studies have generally assumed that populations of living wild rice, O. rufipogon , are descendants of the ancestral population that gave rise to domesticated rice, but relatively little attention has been paid to the origins and history of wild rice itself. Here, we investigate the genetic ancestry of wild rice by analyzing a diverse panel of rice genomes consisting of 203 domesticated and 435 wild rice accessions. We show that most modern wild rice is heavily admixed with domesticated rice through both pollen- and seed-mediated gene flow. In fact, much presumed wild rice may simply represent different stages of feralized domesticated rice. In line with this hypothesis, many presumed wild rice varieties show remnants of the effects of selective sweeps in previously identified domestication genes, as well as evidence of recent selection in flowering genes possibly associated with the feralization process. Furthermore, there is a distinct geographical pattern of gene flow from aus , indica , and japonica varieties into colocated wild rice. We also show that admixture from aus and indica is more recent than gene flow from japonica , possibly consistent with an earlier spread of japonica varieties. We argue that wild rice populations should be considered a hybrid swarm, connected to domesticated rice by continuous and extensive gene flow. © 2017 Wang et al.; Published by Cold Spring Harbor Laboratory Press.

  17. Rice methylmercury exposure and mitigation: a comprehensive review

    Science.gov (United States)

    Rothenberg, Sarah E.; Windham-Myers, Lisamarie; Creswell, Joel E.

    2014-01-01

    Rice cultivation practices from field preparation to post-harvest transform rice paddies into hot spots for microbial mercury methylation, converting less-toxic inorganic mercury to more-toxic methylmercury, which is likely translocated to rice grain. This review includes 51 studies reporting rice total mercury and/or methylmercury concentrations, based on rice (Orzya sativa) cultivated or purchased in 15 countries. Not surprisingly, both rice total mercury and methylmercury levels were significantly higher in polluted sites compared to non-polluted sites (Wilcoxon rank sum, price percent methylmercury (of total mercury) did not differ statistically between polluted and non-polluted sites (Wilcoxon rank sum, p=0.35), suggesting comparable mercury methylation rates in paddy soil across these sites and/or similar accumulation of mercury species for these rice cultivars. Studies characterizing the effects of rice cultivation under more aerobic conditions were reviewed to determine the mitigation potential of this practice. Rice management practices utilizing alternating wetting and drying (instead of continuous flooding) caused soil methylmercury levels to spike, resulting in a strong methylmercury pulse after fields were dried and reflooded; however, it is uncertain whether this led to increased translocation of methylmercury from paddy soil to rice grain. Due to the potential health risks, it is advisable to investigate this issue further, and to develop separate water management strategies for mercury polluted and non-polluted sites, in order to minimize methylmercury exposure through rice ingestion.

  18. Response-based selection of barley cultivars and legume species for complementarity: Root morphology and exudation in relation to nutrient source.

    Science.gov (United States)

    Giles, Courtney D; Brown, Lawrie K; Adu, Michael O; Mezeli, Malika M; Sandral, Graeme A; Simpson, Richard J; Wendler, Renate; Shand, Charles A; Menezes-Blackburn, Daniel; Darch, Tegan; Stutter, Marc I; Lumsdon, David G; Zhang, Hao; Blackwell, Martin S A; Wearing, Catherine; Cooper, Patricia; Haygarth, Philip M; George, Timothy S

    2017-02-01

    Phosphorus (P) and nitrogen (N) use efficiency may be improved through increased biodiversity in agroecosystems. Phenotypic variation in plants' response to nutrient deficiency may influence positive complementarity in intercropping systems. A multicomponent screening approach was used to assess the influence of P supply and N source on the phenotypic plasticity of nutrient foraging traits in barley (H. vulgare L.) and legume species. Root morphology and exudation were determined in six plant nutrient treatments. A clear divergence in the response of barley and legumes to the nutrient treatments was observed. Root morphology varied most among legumes, whereas exudate citrate and phytase activity were most variable in barley. Changes in root morphology were minimized in plants provided with ammonium in comparison to nitrate but increased under P deficiency. Exudate phytase activity and pH varied with legume species, whereas citrate efflux, specific root length, and root diameter lengths were more variable among barley cultivars. Three legume species and four barley cultivars were identified as the most responsive to P deficiency and the most contrasting of the cultivars and species tested. Phenotypic response to nutrient availability may be a promising approach for the selection of plant combinations for minimal input cropping systems. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  19. Relação entre diferença mínima significativa e coeficiente de variação nos ensaios de competição de cultivares Relation among least significant difference and coefficient of variation in the cultivar competition trials

    Directory of Open Access Journals (Sweden)

    Alessandro Dal Col Lúcio

    1998-06-01

    Full Text Available O objetivo deste trabalho foi caracterizar ensaios de competição de cultivares de milho, trigo, soja, feijão, cevada, aveia, triticale e sorgo conduzidos no Estado do Rio Grande do Sul e estimar a relação entre a diferença mínima significativa (DMS e o coeficiente de variação (CV. Foram utilizadas as principais características estatísticas de 2014 ensaios: delineamento experimental, número de cultivares, número de repetições, número de graus de liberdade do erro, CV e a DMS obtida pelo método de Tukey em porcentagem da média dos ensaios. A estimativa da equação de regressão entre a DMS e o CV (variável independente, passando pela origem, resultou numa relação média de DMS = 2,72xCV, variando entre 2,47 (cevada e 3,05 (sorgo. Esta variação nas relações indicam que existe diferenças nos planos experimentais tradicionais usados pelos pesquisadores. A DMS é uma estatística adequada para o controle de qualidade dos ensaios de competição de cultivares. Ela é facilmente obtido a partir do CV e reflete, em termos do valor comercial da produção, a importância da sua magnitude.The objetive of this work was to study competition trials of maize, wheat, soybeans, drybeans, barley, oats, triticale and sorghum conducted in Rio Grande do Sul State and estimate relations between least significant difference and coefficient of variation. Statistics characteristics of 2014 trials were used, such as: experimental design, number of cultivars, replications, error degrees of freedom, coeffïcient of variation (CV and least significant difference (LSD obtained from Tukey's test by the porcentage of the experiment mean. The regression equation passing through the origin obtained between LSD and CV as the independent variable resulted in LSD = 2.72xCV, with the angular coeffïcient ranging from 2.47 (barley to 3.05 (sorghum. These difference indicate that there are deviations of the traditional experimental layouts used by field crop

  20. Tungsten (W) bioavailability in paddy rice soils and its accumulation in rice (Oryza sativa).

    Science.gov (United States)

    James, Blessing; Zhang, Weili; Sun, Pei; Wu, Mingyan; Li, Hong Hong; Khaliq, Muhammad Athar; Jayasuriya, Pathmamali; James, Swithin; Wang, Guo

    2017-12-01

    The aim of this study was to investigate the accumulation characteristics of tungsten (W) by different indica rice cultivars from the soil and to assess the potential risks to human health via dietary intake of W in rice consumption. A total of 153 rice (ear) samples of 15 cultivars and the corresponding surface soil samples were collected from 7 cities in Fujian Province of southeastern China. The available soil W were extracted using H 2 C 2 O 4 ·2H 2 O-(NH 4 ) 2 C 2 O 4 ·H 2 O at pH 3.3). Results showed that the total soil W ranged from 2.03 mg kg -1 to 15.34 mg kg -1  and available soil W ranged from 0.03 mg kg -1 to 1.61 mg kg -1 . The W concentration in brown rice varied from 7 μg kg -1 to 283 μg kg -1 and was significantly correlated with the available soil W. The highest mean TF avail (transfer factor based on available soil W) was 0.91 for Te-you 627 (hybrid, indica rice), whereas the lowest was 0.08 for Yi-you 673 (hybrid, indica rice). The TF avail decreased with the increase in available soil W, clay content, and cation exchange capacity. The consumption of the brown rice produced from the investigated areas in some cultivars by the present study may cause risks to human health.

  1. Application of space mutation on creation of rice new material and breeding of new variety

    International Nuclear Information System (INIS)

    Pu Zhigang; Zhang Zhiyong; Xiang Yuewu; Cai Pingzhong; Zhou Xianming; Zhang Zhixiong

    2008-01-01

    One rice material with quasi-aromatic and special color-glumes has been selected through space mutation. A new cytoplasmic male sterile line was transferred from the special rice material. The abortive fertility of sterility is stable, its restoring and combining ability is well. The rice quality of Huaxiang A reaches the third grade rice high-quality standard. A new high yielding hybrid rice cultivar (Huaxiang 7) was bred from the cytoplasmic male sterile line 'Huaxiang A' and restorer line 'Chuanhui 907', which already passed provincinal evaluation. (authors)

  2. Mitigation of Cd accumulation in paddy rice (Oryza sativa L.) by Fe fertilization.

    Science.gov (United States)

    Chen, Zhe; Tang, Ye-Tao; Yao, Ai-Jun; Cao, Jian; Wu, Zhuo-Hao; Peng, Zhe-Ran; Wang, Shi-Zhong; Xiao, Shi; Baker, Alan J M; Qiu, Rong-Liang

    2017-12-01

    Cadmium uptake in rice is believed to be mediated by the Fe transport system. Phyto-available Cd can be changed by Fe fertilization of substrates. This work investigated whether and how Fe fertilization affects mitigation of Cd accumulation in paddy rice. A 90-d soil column experiment was conducted to study the change of Cd and Fe availability in soil after Fe fertilization (ionic and chelated Fe). A low-Cd accumulating cultivar (TY116) and a high-Cd accumulating cultivar (JY841) were grown in two Cd-polluted paddy soils amended with chelated Fe fertilizers. Additionally, both cultivars were grown in hydroponics to compare Fe-related gene expression in EDDHAFe-deficient and EDDHAFe-sufficient roots. The column experiment showed that EDTANa 2 Fe(II) and EDDHAFe(III) fertilization had a better mitigation effect on soil Cd availability compared to FeSO 4 ·7H 2 O. Moreover, the field experiment demonstrated that these two chelated fertilizations could reduce Cd concentrations in brown rice by up to 80%. Iron concentrations in the brown rice were elevated by Fe chelates. Compared to EDDHAFe(III), EDTANa 2 Fe(II) fertilization had a stronger mitigation effect by generating more EDTANa 2 Cd(II) in the soil solution to decrease phyto-available Cd in the soil. While EDDHAFe(III) fertilization could increase soil pH and decrease soil Eh which contributed to decreasing phyto-available Cd in a contaminated soil. In the hydroponic experiment, Fe sufficiency significantly reduced Cd concentrations in above-ground organs. In some cases, the expression of OsIRT1, OsNRAMP1 and OsNRAMP5 was inhibited under Fe sufficiency relative to Fe deficiency conditions. These results suggest that mitigation of rice Cd by Fe chelate fertilization results from a decrease in available Cd in substrates and the inhibition of the expression of several Fe-related genes in the IRT and NRAMP families. Copyright © 2017 Elsevier Ltd. All rights reserved.

  3. Determination of genetic variability of traditional varieties of Brazilian rice using microsatellite markers

    Directory of Open Access Journals (Sweden)

    Claudio Brondani

    2006-01-01

    Full Text Available The rice (Oryza sativa breeding program of the Rice and Bean research center of the Brazilian agricultural company Empresa Brasileira de Pesquisa Agropecuária (Embrapa is well established and provides new cultivars every year to attend the demand for improved high yielding varieties with tolerance to biotic and abiotic stresses. However, the elite genitors used to compose new populations for selection are closely related, contributing to the yield plateau reached in the last 20 years. To overcome this limit, it is necessary to broaden the genetic basis of the cultivars using diverse germplasm such as wild relatives or traditional varieties, with the latter being more practical because they are more easily crossed with elite germplasm to accelerate the recovery of modern plant types in the breeding lines. The objective of our study was to characterize the allelic diversity of 192 traditional varieties of Brazilian rice using 12 simple sequence repeat (SSR or microsatellite markers. The germplasm was divided into 39 groups by common name similarity. A total of 176 alleles were detected, 30 of which (from 23 accessions were exclusive. The number of alleles per marker ranged from 6 to 22, with an average of 14.6 alleles per locus. We identified 16 accessions as a mixture of pure lines or heterozygous plants. Dendrogram analysis identified six clusters of identical accessions with different common names and just one cluster with identical accessions with the same common name, indicating that SSR markers are fundamental to determining the genetic relationship between landraces. A subset of 24 landraces, representatives of the 13 similarity groups plus the 11 accessions not grouped, was the most variable set of genotypes analyzed. These accessions can be used as genitors to increase the genetic variability available to rice breeding programs.

  4. Integrated physiological, biochemical and molecular analysis identifies important traits and mechanisms associated with differential response of rice genotypes to elevated temperature

    Directory of Open Access Journals (Sweden)

    Boghireddy eSailaja

    2015-11-01

    Full Text Available In changing climate, heat stress caused by high temperature poses a serious threat to rice cultivation. A multiple organizational analysis at physiological, biochemical and molecular level is required to fully understand the impact of elevated temperature in rice. This study was aimed at deciphering the elevated temperature response in eleven popular and mega rice cultivars widely grown in India. Physiological and biochemical traits specifically membrane thermostability (MTS, antioxidants, and photosynthesis were studied at vegetative and reproductive phases which were used to establish a correlation with grain yield under stress. Several useful traits in different genotypes were identified which will be important resource to develop high temperature tolerant rice cultivars. Interestingly, Nagina22 emerged as best performer in terms of yield as well as expression of physiological and biochemical traits at elevated temperature. It showed lesser relative injury, lesser reduction in chlorophyll content, increased super oxide dismutase, catalase and peroxidase activity, lesser reduction in net photosynthetic rate (PN, high transpiration rate (E and other photosynthetic/ fluorescence parameters contributing to least reduction in spikelet fertility and grain yield at elevated temperature. Further, expression of 14 genes including heat shock transcription factors and heat shock proteins was analyzed in Nagina22 (tolerant and Vandana (susceptible at flowering phase, strengthening the fact that N22 performs better at molecular level also during elevated temperature. This study shows that elevated temperature response is complex and involves multiple biological processes which are needed to be characterized to address the challenges of future climate extreme conditions.

  5. Processing Conditions, Rice Properties, Health and Environment

    Directory of Open Access Journals (Sweden)

    Nobutaka Nakamura

    2011-06-01

    Full Text Available Rice is the staple food for nearly two-thirds of the world’s population. Food components and environmental load of rice depends on the rice form that is resulted by different processing conditions. Brown rice (BR, germinated brown rice (GBR and partially-milled rice (PMR contains more health beneficial food components compared to the well milled rice (WMR. Although the arsenic concentration in cooked rice depends on the cooking methods, parboiled rice (PBR seems to be relatively prone to arsenic contamination compared to that of untreated rice, if contaminated water is used for parboiling and cooking. A change in consumption patterns from PBR to untreated rice (non-parboiled, and WMR to PMR or BR may conserve about 43–54 million tons of rice and reduce the risk from arsenic contamination in the arsenic prone area. This study also reveals that a change in rice consumption patterns not only supply more food components but also reduces environmental loads. A switch in production and consumption patterns would improve food security where food grains are scarce, and provide more health beneficial food components, may prevent some diseases and ease the burden on the Earth. However, motivation and awareness of the environment and health, and even a nominal incentive may require for a method switching which may help in building a sustainable society.

  6. Effectiveness of sodium azide alone compared to sodium azide in combination with methyl nitrosurea for rice mutagenesis

    Science.gov (United States)

    Rice seeds of the temperate japonica cultivar Kitaake were mutagenized with sodium azide alone and in combination with methyl nitrosourea. Using the reduced representation sequencing method Restriction Enzyme Sequence Comparative Analysis (RESCAN), the mutation densities, types and local sequence co...

  7. Stress-inducible expression of AtDREB1A transcription factor greatly improves drought stress tolerance in transgenic indica rice.

    Science.gov (United States)

    Ravikumar, G; Manimaran, P; Voleti, S R; Subrahmanyam, D; Sundaram, R M; Bansal, K C; Viraktamath, B C; Balachandran, S M

    2014-06-01

    The cultivation of rice (Oryza sativa L.), a major food crop, requires ample water (30 % of the fresh water available worldwide), and its productivity is greatly affected by drought, the most significant environmental factor. Much research has focussed on identifying quantitative trait loci, stress-regulated genes and transcription factors that will contribute towards the development of climate-resilient/tolerant crop plants in general and rice in particular. The transcription factor DREB1A, identified from the model plant Arabidopsis thaliana, has been reported to enhance stress tolerance against drought stress. We developed transgenic rice plants with AtDREB1A in the background of indica rice cultivar Samba Mahsuri through Agrobacterium-mediated transformation. The AtDREB1A gene was stably inherited and expressed in T1 and T2 plants and in subsequent generations, as indicated by the results of PCR, Southern blot and RT-PCR analyses. Expression of AtDREB1A was induced by drought stress in transgenic rice lines, which were highly tolerant to severe water deficit stress in both the vegetative and reproductive stages without affecting their morphological or agronomic traits. The physiological studies revealed that the expression of AtDREB1A was associated with an increased accumulation of the osmotic substance proline, maintenance of chlorophyll, increased relative water content and decreased ion leakage under drought stress. Most of the homozygous lines were highly tolerant to drought stress and showed significantly a higher grain yield and spikelet fertility relative to the nontransgenic control plants under both stressed and unstressed conditions. The improvement in drought stress tolerance in combination with agronomic traits is very essential in high premium indica rice cultivars, such as Samba Mahsuri, so that farmers can benefit in times of seasonal droughts and water scarcity.

  8. Multiple cold resistance loci confer the high cold tolerance adaptation of Dongxiang wild rice (Oryza rufipogon) to its high-latitude habitat.

    Science.gov (United States)

    Mao, Donghai; Yu, Li; Chen, Dazhou; Li, Lanying; Zhu, Yuxing; Xiao, Yeqing; Zhang, Dechun; Chen, Caiyan

    2015-07-01

    Dongxiang wild rice is phylogenetically close to temperate japonica and contains multiple cold resistance loci conferring its adaptation to high-latitude habitat. Understanding the nature of adaptation in wild populations will benefit crop breeding in the development of climate-resilient crop varieties. Dongxiang wild rice (DXWR), the northernmost common wild rice known, possesses a high degree of cold tolerance and can survive overwintering in its native habitat. However, to date, it is still unclear how DXWR evolved to cope with low-temperature environment, resulting in limited application of DXWR in rice breeding programs. In this study, we carried out both QTL mapping and phylogenetic analysis to discern the genetic mechanism underlying the strong cold resistance. Through a combination of interval mapping and single locus analysis in two genetic populations, at least 13 QTLs for seedling cold tolerance were identified in DXWR. A phylogenetic study using both genome-wide InDel markers and markers associated with cold tolerance loci reveals that DXWR belongs to the Or-III group, which is most closely related to cold-tolerant Japonica rice rather than to the Indica cultivars that are predominant in the habitat where DXWR grows. Our study paves the way toward an understanding of the nature of adaptation to a northern habitat in O. rufipogon. The QTLs identified in DXWR in this study will be useful for molecular breeding of cold-tolerant rice.

  9. Biology and reproductive capacity of Spodoptera eridania (Cramer) (Lepidoptera, Noctuidae) in different soybean cultivars

    OpenAIRE

    Favetti,Bruna Magda; Butnariu,Alessandra Regina; Foerster,Luís Amilton

    2015-01-01

    This study aimed to evaluate the development, survival and reproductive capacity of Spodoptera eridania in four soybean cultivars. The experiment was conducted in the laboratory, in a climatic chamber at 25 degrees C +/- C, 70 +/- 10% relative humidity and 12 h photophase. The cultivars used were: FMT Tabarana, BRS/MT Pintado, FMT Tucunare and Monsoy 8757, all conventional cultivars with medium cycles. All cultivars tested allowed the development of S. eridania. However, Monsoy 8757 was the c...

  10. Study on Analysis of Variance on the indigenous wild and cultivated rice species of Manipur Valley

    Science.gov (United States)

    Medhabati, K.; Rohinikumar, M.; Rajiv Das, K.; Henary, Ch.; Dikash, Th.

    2012-10-01

    The analysis of variance revealed considerable variation among the cultivars and the wild species for yield and other quantitative characters in both the years of investigation. The highly significant differences among the cultivars in year wise and pooled analysis of variance for all the 12 characters reveal that there are enough genetic variabilities for all the characters studied. The existence of genetic variability is of paramount importance for starting a judicious plant breeding programme. Since introduced high yielding rice cultivars usually do not perform well. Improvement of indigenous cultivars is a clear choice for increase of rice production. The genetic variability of 37 rice germplasms in 12 agronomic characters estimated in the present study can be used in breeding programme

  11. Radiation use efficiency of rice under different planting methods and environmental conditions

    International Nuclear Information System (INIS)

    Apakupakul, R.

    1995-01-01

    Radiation use efficiency is an important parameter which has often been used in many crop growth models to estimate total biomass and yield. Studies of the relationships between above-ground biomass and accumulative absorbed photosynthetically active radiation (PARa, MJ/square m) of rice were examined both on-farms and on-station in Phatthalung. Planting methods were wet-sown and transplanted rice for Suphanburi 90 in the 1993 dry season and Chieng in the 1993-94 wet season. Solar radiation of the two growing seasons were calculated from climatic data. The objectives of this experiment were (1) to know the pattern of relationship between above-ground biomass and accumulative absorbed PAR of rice cultivars grown in South Thailand, (2) to compare the radiation use efficiency of rice cultivars under different planting methods and (3) to obtain the primary data for rice growth modelling in the southern climate. Results presented that only the duration of first growing period up to stem elongation in both cultivars, above-ground biomass and leaf area index were higher in wet-sown than in transplanted rice. Relationship between above-ground biomass accumulation through growing period and accumulative absorbed PAR was in positive linear regression with R*[2)0.85. Erect leaf of Suphanburi 90 had a radiation use efficiency (RUE, g/MJ) higher than non-erect leaf of Chieng. A problem of weed infestation in wet-sown rice in both cultivars had an effect on the RUE which were highly significant lower than transplanted rice. The Rue of wet-sown and transplanted rice were 2.77 and 3.20 g/MJ, respectively for Suphanburi 90, 2.13 and 2.67 g/MJ for Chieng. These results suggest that when dealing with radiation use efficiency in the rice growth modelling the differences of cultivars and planting methods should be taken into consideration

  12. Temporal trends for dioxins-related agrochemicals in sediments in a large-scale rice-producing area, Niigata, Japan

    Energy Technology Data Exchange (ETDEWEB)

    Sakai, Mizuki; Hideo, Kajihara [Niigata Univ. (Japan). Graduate School of Science and Technology; Hiroaki, Muto; Yukio, Takahashi [Niigata Univ. (Japan). Faculty of Engineering

    2004-09-15

    Japanese people have historically eaten rice as the main grain constituent in their diet. In the past 50 years, a larger amount of agrochemicals have been applied to Japanese rice fields to increase rice production. Masunaga et al. reported that common Japanese agrochemicals such as pentachlorophenol (PCP) and chloronitrophen (CNP) used in rice fields in the past contain dioxins as impurities. Since Niigata Plain is the largest rice-producing area in Japan, the soil and/or sediment in the lower basin in Niigata Plain could be highly polluted. In the previous study, we measured the age of a sediment core and the amount of dioxins (PCDD/DFs) in Toyano Lagoon and estimated the historical trend and the sources of dioxin. Most of the sources of dioxin in Toyano Lagoon sediment were PCP and CNP. The aims of this work are to quantify the extent, clarify the historical trends of CNP and PCP pollution in the Toyano Lagoon sediment and consider the interrelation between them.

  13. Glufosinate herbicide-tolerant (LibertyLink) rice vs. conventional rice in diets for growing-finishing swine.

    Science.gov (United States)

    Cromwell, G L; Henry, B J; Scott, A L; Gerngross, M F; Dusek, D L; Fletcher, D W

    2005-05-01

    Genetically modified (GM) rice (LibertyLink, event LLRICE62) that is tolerant to glufosinate ammonium (Liberty) herbicide was compared with a near-isogenic (NI) conventional medium-grain brown rice (cultivar, Bengal) and a commercially milled long-grain brown rice in diets for growing-finishing pigs. The GM and NI rice were grown in 2000. The GM rice was from fields treated (GM+) or not treated (GM-) with glufosinate herbicide. The GM- and NI rice were grown using herbicide regimens typical of southern United States rice production practices. The four rice grains were similar in composition. Growing-finishing pigs (n = 96) were fed fortified rice-soybean meal diets containing the four different rice grains from 25 to 106 kg BW. Diets contained 0.99% lysine initially (growing phase), with lysine decreased to 0.80% (early finishing phase) and 0.65% (late finishing phase), when pigs reached 51 and 77 kg, respectively. The percentage of rice in the four diets was constant during each of the three phases (72.8, 80.0, and 85.8% for the growing, early-finishing, and late-finishing phases, respectively). There were six pen replicates (three pens of barrows and three pens of gilts) and four pigs per pen for each dietary treatment. All pigs were slaughtered at the termination of the study to collect carcass data. At the end of the 98-d experiment, BW gain, feed intake (as-fed basis), and feed:gain ratio did not differ (P > 0.05) for pigs fed the GM+ vs. conventional rice diets, but growth performance traits of pigs fed the GM+ rice diets were superior (P glufosinate herbicide-tolerant rice was similar in composition and nutritional value to conventional rice for growing-finishing pigs.

  14. Signatures of adaptation in the weedy rice genome

    Science.gov (United States)

    Weedy rice is a common problem of by product of domestication that has evolved multiple times from cultivated and wild rice relatives. Here we use whole genome sequences to examine the origin and adaptation of the two major US weedy red rice strains, with a comparison to Chinese weedy red rice. We f...

  15. Mapping of Novel QTL Regulating Grain Shattering Using Doubled Haploid Population in Rice (Oryza sativa L.

    Directory of Open Access Journals (Sweden)

    Gyu-Ho Lee

    2016-01-01

    Full Text Available The critical evolutionary step during domestication of major cereals was elimination of seed shattering because the easy-to-shatter trait in wild relatives results in a severe reduction in yield. In this study, we analyzed the QTLs associated with shattering employing a high-density genetic map in doubled haploid (DH population of rice (Oryza sativa L.. A genetic linkage map was generated with 217 microsatellite markers spanning 2082.4 cM and covering 12 rice chromosomes with an average interval of 9.6 cM between markers based on 120 DHLs derived from a cross between Cheongcheong indica type cultivar and Nagdong japonica type cultivar. In the QTL analysis, five QTLs pertaining to the breaking tensile strength (BTS were detected in 2013 and 2015. Two regions of the QTLs related to BTS on chromosome 1 and chromosome 6 were detected. Several important genes are distributed in 1 Mbp region of the QTL on chromosome 6 and they are related to the formation of abscission layer. We decide to name this QTL qSh6 and the candidate genes in the qSh6 region can be employed usefully in further research for cloning.

  16. Nutritive value evaluated on rats of new cultivars of common beans (Phaseolus vulgaris) released in Chile.

    Science.gov (United States)

    Yañez, E; Zacarias, I; Aguayo, M; Vasquez, M; Guzman, E

    1995-06-01

    Five new cultivars of common beans (Phaseolus vulgaris) recently released were analyzed for their proximate chemical composition and protein biological quality. The crude protein content in these cultivars ranged from 21.9 percent in cultivar Arroz 3 to 26.9 percent in cultivar Tórtola Diana (dry matter basis). Rats fed cultivar Tórtola INIA gained more weight, had a higher protein intake and registered higher PER and NPR than Tórtola corriente. On the other hand, rats consuming cultivars Arroz 3 and Fleetwood had lower weight gain, lower protein intake and lower PER and NPR than cultivar Coscorrón corriente. However, all these cultivars have a relatively good protein value as compared to other plant protein sources.

  17. Fine mapping and characterization of BPH27, a brown planthopper resistance gene from wild rice (Oryza rufipogon Griff.).

    Science.gov (United States)

    Huang, D; Qiu, Y; Zhang, Y; Huang, F; Meng, J; Wei, S; Li, R; Chen, B

    2013-01-01

    The brown planthopper (Nilaparvata lugens Stål; BPH) is one of the most serious rice pests worldwide. Growing resistant varieties is the most effective way to manage this insect, and wild rice species are a valuable source of resistance genes for developing resistant cultivars. BPH27 derived from an accession of Guangxi wild rice, Oryza rufipogon Griff. (Accession no. 2183, hereafter named GX2183), was primarily mapped to a 17-cM region on the long arm of the chromosome four. In this study, fine mapping of BPH27 was conducted using two BC(1)F(2) populations derived from introgression lines of GX2183. Insect resistance was evaluated in the BC(1)F(2) populations with 6,010 individual offsprings, and 346 resistance extremes were obtained and employed for fine mapping of BPH27. High-resolution linkage analysis defined the BPH27 locus to an 86.3-kb region in Nipponbare. Regarding the sequence information of rice cultivars, Nipponbare and 93-11, all predicted open reading frames (ORFs) in the fine-mapping region have been annotated as 11 types of proteins, and three ORFs encode disease-related proteins. Moreover, the average BPH numbers showed significant differences in 96-120 h after release in comparisons between the preliminary near-isogenic lines (pre-NILs, lines harboring resistance genes) and BaiR54. BPH growth and development were inhibited and survival rates were lower in the pre-NIL plants compared with the recurrent parent BaiR54. The pre-NIL exhibited 50.7% reductions in population growth rates (PGR) compared to BaiR54. The new development in fine mapping of BPH27 will facilitate the efforts to clone this important resistant gene and to use it in BPH-resistance rice breeding.

  18. Identification of Novel and Conserved miRNAs from Extreme Halophyte, Oryza coarctata, a Wild Relative of Rice.

    Science.gov (United States)

    Mondal, Tapan Kumar; Ganie, Showkat Ahmad; Debnath, Ananda Bhusan

    2015-01-01

    Oryza coarctata, a halophyte and wild relative of rice, is grown normally in saline water. MicroRNAs (miRNAs) are non-coding RNAs that play pivotal roles in every domain of life including stress response. There are very few reports on the discovery of salt-responsive miRNAs from halophytes. In this study, two small RNA libraries, one each from the control and salt-treated (450 mM NaCl for 24 h) leaves of O. coarctata were sequenced, which yielded 338 known and 95 novel miRNAs. Additionally, we used publicly available transcriptomics data of O. coarctata which led to the discovery of additional 48 conserved miRNAs along with their pre-miRNA sequences through in silico analysis. In total, 36 known and 7 novel miRNAs were up-regulated whereas, 12 known and 7 novel miRNAs were down-regulated under salinity stress. Further, 233 and 154 target genes were predicted for 48 known and 14 novel differentially regulated miRNAs respectively. These targets with the help of gene ontology analysis were found to be involved in several important biological processes that could be involved in salinity tolerance. Relative expression trends of majority of the miRNAs as detected by real time-PCR as well as predicted by Illumina sequencing were found to be coherent. Additionally, expression of most of the target genes was negatively correlated with their corresponding miRNAs. Thus, the present study provides an account of miRNA-target networking that is involved in salinity adaption of O. coarctata.

  19. Investigating the roles of MicroRNAs in biotic stress response induced by Rhizoctonia solani in rice

    Energy Technology Data Exchange (ETDEWEB)

    Syuhada, O. Nurfarahana; Kalaivani, N. [School of Environmental and Natural Resource Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor (Malaysia)

    2014-09-03

    Sheath blight disease, caused by Rhizoctonia solani 1802/KB was screened on two rice varieties, Oryza sativaindica cultivar MR219 and Oryza sativa indica cultivar UKMRC9. The disease symptom was severe in MR219 compared to UKMRC9. Total RNA from R. solani 1802/KB, infected rice leaves of MR219 and infected rice leaves of UKMRC9 were extracted using TRIzol reagent, purified and sent for small RNA sequencing. Three miRNA libraries were generated and analyzed. The libraries generated 65 805, 78 512 and 81 325 known miRNAs respectively. The structure of miRNA of these samples was predicted. The up-regulated and down-regulated of miRNAs target gene prediction and its target functions were discovered and were mainly related to the growth and development of metabolism, protein transport, transcriptional regulation, stress response, and hormone signaling and electron transfer. Sheath blight-induced differential expression of known miRNAs tends to targetMYB transcription factor, F-box proteins, NBS-LRR, leucine-rich repeat receptor protein kinases and zinc finger proteins. Detecting new miRNAs and measuring the expression profiles of known miRNAs is an important tasks required for a better understanding of various biological conditions. Therefore, further analysis using Gene Ontology Slim will be conducted to deduce some biological information from the datasets obtained.

  20. early maturing mutants in Indica rice and their traits

    International Nuclear Information System (INIS)

    Chen Xiulan; He Zhentian; Han Yuepeng; Liu Xueyu; Yang Hefeng; Xu Chenwu; Gu Shiliang

    1998-01-01

    The correlation and genetic parameters of eleven agronomic characters of 50 early mature lines induced from late mature cultivar, IR 1529-68-3-2 were studied by morphological classification and correlation and regression analysis. The results showed that: 1. The early mutants could be divided into two ecotype: early mature type and medium mature type of mid-maturity rice. 2. The 1000-grain weight of early mutants negatively correlated with the length of growing period. 3. According to direct path coefficients, the relation with heading period of early mutants was in order of 1000-grain-weight>plant height>seed sterility. 4.The higher heritability in broad sense were found in plant height, 1000 grain weight and heading period of the early mutants

  1. Gene expression and plant hormone levels in two contrasting rice genotypes responding to brown planthopper infestation.

    Science.gov (United States)

    Li, Changyan; Luo, Chao; Zhou, Zaihui; Wang, Rui; Ling, Fei; Xiao, Langtao; Lin, Yongjun; Chen, Hao

    2017-02-28

    The brown planthopper (BPH; Nilaparvata lugens Stål) is a destructive piercing-sucking insect pest of rice. The plant hormones salicylic acid (SA) and jasmonic acid (JA) play important roles in plant-pest interactions. Many isolated rice genes that modulate BPH resistance are involved in the metabolism or signaling pathways of SA, JA and ethylene. 'Rathu Heenati' (RH) is a rice cultivar with a high-level, broad-spectrum resistance to all BPH biotypes. Here, RH was used as the research material, while a BPH-susceptible rice cultivar 'Taichung Native 1' (TN1) was the control. A cDNA microarray analysis illuminated the resistance response at the genome level of RH under BPH infestation. The levels of SA and JA in RH and TN1 seedlings after BPH infestation were also determined. The expression pattern clustering indicated that 1467 differential probe sets may be associated with constitutive resistance and 67 with the BPH infestation-responsive resistance of RH. A Venn diagram analysis revealed 192 RH-specific and BPH-inducible probe sets. Finally, 23 BPH resistance-related gene candidates were selected based on the expression pattern clustering and Venn diagram analysis. In RH, the SA content significantly increased and the JA content significantly decreased after BPH infestation, with the former occurring prior to the latter. In RH, the differential genes in the SA pathway were synthesis-related and were up-regulated after BPH infestation. The differential genes in the JA pathway were also up-regulated. They were jasmonate ZIM-domain transcription factors, which are important negative regulators of the JA pathway. Comparatively, genes involved in the ET pathway were less affected by a BPH infestation in RH. DNA sequence analysis revealed that most BPH infestation-inducible genes may be regulated by the genetic background in a trans-acting manner, instead of by their promoters. We profiled the analysis of the global gene expression in RH and TN1 under BPH infestation

  2. Impact of bio-processing on rice

    Directory of Open Access Journals (Sweden)

    ANCA NICOLAU

    2011-07-01

    Full Text Available The usual way of preparing rice is boiling, thermal process that gives it a lower digestibility as compared to instantiation, extrusion or expandation. Having in view this fact, the possibility to biotechnologically improve the boiled rice digestibility was investigated in a laboratory study. In this respect, boiled rice wassolid state fermented using a strain of Saccharomycopsis fibuligera, an amylase producing yeast originating from ragi. Fermented rice was then analyzed from the point of view of its content in easily assimilable sugars, protein, amino-acids, phosphorus and vitamins from B group. Biochemical analyses revealed that the fermented rice has a ten times higher content of reducing sugars than boiled rice, due to starch hydrolysis, while chromatographic studies proved that the fermented rice contains glucose, maltose, maltotriose and maltotetrose that are easily assimilable carbohydrates.Fermented rice has a protein content that is two times higher than that of boiled rice because it contains the yeast biomass, and is enriched in vitamins from B group (B1, B2, and B6 that are synthesized by the yeast. Inorganic phosphorus present in rice doubles its concentration in fermented rice, which means thatphosphorus bioavailability is increased.The sensorial profile of boiled rice is also improved by fermentation.This study proves the possibility to have a processing method which is relatively cheap, practical and of which the resulting product has good nutritive qualities and does not pose safety problems due to pure culture utilization as starter.

  3. Dynamic changes in the distribution of minerals in relation to phytic acid accumulation during rice seed development.

    Science.gov (United States)

    Iwai, Toru; Takahashi, Michiko; Oda, Koshiro; Terada, Yasuko; Yoshida, Kaoru T

    2012-12-01

    Phytic acid (inositol hexakisphosphate [InsP(6)]) is the storage compound of phosphorus in seeds. As phytic acid binds strongly to metallic cations, it also acts as a storage compound of metals. To understand the mechanisms underlying metal accumulation and localization in relation to phytic acid storage, we applied synchrotron-based x-ray microfluorescence imaging analysis to characterize the simultaneous subcellular distribution of some mineral elements (phosphorus, calcium, potassium, iron, zinc, and copper) in immature and mature rice (Oryza sativa) seeds. This fine-imaging method can reveal whether these elements colocalize. We also determined their accumulation patterns and the changes in phosphate and InsP(6) contents during seed development. While the InsP(6) content in the outer parts of seeds rapidly increased during seed development, the phosphate contents of both the outer and inner parts of seeds remained low. Phosphorus, calcium, potassium, and iron were most abundant in the aleurone layer, and they colocalized throughout seed development. Zinc was broadly distributed from the aleurone layer to the inner endosperm. Copper localized outside the aleurone layer and did not colocalize with phosphorus. From these results, we suggest that phosphorus translocated from source organs was immediately converted to InsP(6) and accumulated in aleurone layer cells and that calcium, potassium, and iron accumulated as phytic acid salt (phytate) in the aleurone layer, whereas zinc bound loosely to InsP(6) and accumulated not only in phytate but also in another storage form. Copper accumulated in the endosperm and may exhibit a storage form other than phytate.

  4. Impact of mutation breeding in rice. A review

    Energy Technology Data Exchange (ETDEWEB)

    Rutger, J N [Department of Agriculture, Stoneville, MS (United States). Agricultural Research Service

    1992-07-01

    More cultivars have been developed in rice through the use of mutation breeding than in any other crop. Direct releases of mutants as cultivars began some 30 years ago, and now total 198 cultivars. During the last 20 years, increasing use has been made of induced mutants in cross-breeding programs, leading to 80 additional cultivars. Principal improvements through mutation breeding have been earlier maturity, short stature, and grain character modifications. Rice has been a popular subject of mutagenesis because it is the world`s leading food crop, has diploid inheritance, and is highly self-pollinated. In recent years induced mutation has been exploited to develop breeding tool mutants, which are defined as mutants that in themselves may not have direct agronomic application but may be useful genetic tools for crop improvement. Examples include the eui gene, hull colour mutants, normal genetic male steriles, and environmentally sensitive genetic male steriles. The environmentally sensitive genetic male steriles, especially those in which male sterility can be turned on or off by different photoperiod lengths, show promise for simplifying hybrid rice seed production both in China and the USA. Future applications of mutation in rice include induction of unusual endosperm starch types, plant types with fewer but more productive tillers, dominant dwarfs, dominant genetic male steriles, extremely early maturing mutants, nutritional mutants, and in vitro-derived mutants for tolerance to herbicides or other growth stresses. Refs, 4 figs, 2 tabs.

  5. Genetic analysis of Resistance to Rice Bacterial blight in Uganda ...

    African Journals Online (AJOL)

    A full-diallel mating design involving three resistant and three susceptible rice cultivars was used to produce F1 and F2 progenies in a screen-house at the National Crop Resources Research Institute (NaCRRI), Namulonge in Uganda. The parents and F2 populations were challenged with the Xanthomonas oryzae ...

  6. Reducing arsenic accumulation in rice grain through iron oxide amendment

    Science.gov (United States)

    In this research, we investigated the accumulation of arsenic (As), selenium (Se), molybdenum (Mo), and cadmium (Cd) in rice grain under different soil conditions in standard straighthead-resistant and straighthead-susceptible cultivars, Zhe 733 and Cocodrie, respectively. Results demonstrated that,...

  7. SSR marker based DNA fingerprinting and diversity study in rice ...

    African Journals Online (AJOL)

    The genetic diversity and DNA fingerprinting of 15 elite rice genotypes using 30 SSR primers on chromosome numbers 7-12 was investigated. The results revealed that all the primers showed distinct polymorphism among the cultivars studied indicating the robust nature of microsatellites in revealing polymorphism. Cluster ...

  8. Analysis of Stress-Responsive Gene Expression in Cultivated and Weedy Rice Differing in Cold Stress Tolerance.

    Directory of Open Access Journals (Sweden)

    Caroline Borges Bevilacqua

    Full Text Available Rice (Oryza sativa L. cultivars show impairment of growth in response to environmental stresses such as cold at the early seedling stage. Locally adapted weedy rice is able to survive under adverse environmental conditions, and can emerge in fields from greater soil depth. Cold-tolerant weedy rice can be a good genetic source for developing cold-tolerant, weed-competitive rice cultivars. An in-depth analysis is presented here of diverse indica and japonica rice genotypes, mostly weedy rice, for cold stress response to provide an understanding of different stress adaptive mechanisms towards improvement of the rice crop performance in the field. We have tested a collection of weedy rice genotypes to: 1 classify the subspecies (ssp. grouping (japonica or indica of 21 accessions; 2 evaluate their sensitivity to cold stress; and 3 analyze the expression of stress-responsive genes under cold stress and a combination of cold and depth stress. Seeds were germinated at 25°C at 1.5- and 10-cm sowing depth for 10d. Seedlings were then exposed to cold stress at 10°C for 6, 24 and 96h, and the expression of cold-, anoxia-, and submergence-inducible genes was analyzed. Control plants were seeded at 1.5cm depth and kept at 25°C. The analysis revealed that cold stress signaling in indica genotypes is more complex than that of japonica as it operates via both the CBF-dependent and CBF-independent pathways, implicated through induction of transcription factors including OsNAC2, OsMYB46 and OsF-BOX28. When plants were exposed to cold + sowing depth stress, a complex signaling network was induced that involved cross talk between stresses mediated by CBF-dependent and CBF-independent pathways to circumvent the detrimental effects of stresses. The experiments revealed the importance of the CBF regulon for tolerance to both stresses in japonica and indica ssp. The mechanisms for cold tolerance differed among weedy indica genotypes and also between weedy indica and

  9. Esterase polymorphism marking cultivars of Manihot esculenta, Crantz

    Directory of Open Access Journals (Sweden)

    Adriana Gazoli Resende

    2004-07-01

    Full Text Available Esterase isozymes were used to detected substrate-preference polymorphism in twenty cultivars of Manihot esculenta, and to show cultivar-specific variation of this species. A relatively complex extraction solution of proteins from leaves was needed to show a larger number of esterase isozymes. Similarity between cultivars from six groups ranged from 51 to 96%. The cultivars identified by the same name seemed to be biochemically different regarding esterase isozymes. Esterase isozyme electrophoretic patterns could, therefore, be used to discriminate the cultivars identified by the same name, and to monitor the vegetative propagation of cultivars maintained in the germplasm collection. In breeding strategies, isoesterase analysis could be used to avoid intercrossing between the similar genotypes.Isoenzimas esterases foram usadas no presente estudo, para detectar polimorfismos específicos para diferentes substratos em vinte cultivares de Manihot esculenta, e para mostrar variações específicas de cultivares nesta espécie. Os diferentes cultivares de M. esculenta tem sido mantidos na coleção de germoplasma do Departamento de Agronomia da Universidade Estadual de Maringá (Maringá, PR, e foram provenientes de cultivares tradicionais coletados nas regiões sudoeste e noroeste do Estado. Foi necessário a utilização de uma solução de extração de proteínas relativamente mais complexa, para evidenciar um maior número de isoenzimas esterases. A similaridade entre os cultivares variou de 51 a 96%. Cultivares identificados pelo mesmo nome parecem ser bioquimicamente diferentes para as isoenzimas esterases. Os padrões eletroforéticos das isoesterases podem, portanto, serem usados para discriminar os cultivares que são identificados pelo mesmo nome, e para monitorar a propagação vegetativa dos cultivares mantidos na coleção de germoplasma. A análise das isoesterases pode também ser usada para evitar cruzamentos entre genótipos mais

  10. Agricultural Innovation Systems (AIS): A Study of Stakeholders and Their Relations in System of Rice Intensification (SRI)

    Science.gov (United States)

    Suchiradipta, Bhattacharjee; Raj, Saravanan

    2015-01-01

    Purpose: This paper identifies the stakeholders of System of Rice Intensification (SRI), their roles and actions and the supporting and enabling environment of innovation in the state as the elements of the Agricultural Innovation Systems (AIS) in SRI in Tripura state of India and studies the relationship matrix among the stakeholders.…

  11. Cry1Ab expression rice does not influence expression of fecundity related genes in the wolf spider Pardosa pseudoannulata

    Science.gov (United States)

    The impact of Bacillus thuringiensis (Bt) toxin proteins on the arthropod assemblages in rice agroecosystems, including non-target predatory arthropods, has been well documented. However, the influence of Bt toxins on predators remains understudied at the cellular and molecular levels. Here, we inve...

  12. Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture

    DEFF Research Database (Denmark)

    Li, Lei; Wang, Xiangfeng; Xia, Mian

    2005-01-01

    BACKGROUND: Sequencing and annotation of the genome of rice (Oryza sativa) have generated gene models in numbers that top all other fully sequenced species, with many lacking recognizable sequence homology to known genes. Experimental evaluation of these gene models and identification of new mode...