POLLA-NESC, Resonance Parameter R-Matrix to S-Matrix Conversion by Reich-Moore Method

International Nuclear Information System (INIS)

Saussure, G. de; Perez, R.B.

1975-01-01

1 - Description of problem or function: The program transforms a set of r-matrix nuclear resonance parameters into a set of equivalent s-matrix (or Kapur-Peierls) resonance parameters. 2 - Method of solution: The program utilizes the multilevel formalism of Reich and Moore and avoids diagonalization of the level matrix. The parameters are obtained by a direct partial fraction expansion of the Reich-Moore expression of the collision matrix. This approach appears simpler and faster when the number of fission channels is known and small. The method is particularly useful when a large number of levels must be considered because it does not require diagonalization of a large level matrix. 3 - Restrictions on the complexity of the problem: By DIMENSION statements, the program is limited to maxima of 100 levels and 5 channels

Theoretical treatment of molecular photoionization based on the R-matrix method

International Nuclear Information System (INIS)

Tashiro, Motomichi

2012-01-01

The R-matrix method was implemented to treat molecular photoionization problem based on the UK R-matrix codes. This method was formulated to treat photoionization process long before, however, its application has been mostly limited to photoionization of atoms. Application of the method to valence photoionization as well as inner-shell photoionization process will be presented.

Rational top and its classical r-matrix

International Nuclear Information System (INIS)

Aminov, G; Arthamonov, S; Smirnov, A; Zotov, A

2014-01-01

We construct a rational integrable system (the rational top) on a co-adjoint orbit of SL N Lie group. It is described by the Lax operator with spectral parameter and classical non-dynamical skew-symmetric r-matrix. In the case of the orbit of minimal dimension the model is gauge equivalent to the rational Calogero–Moser (CM) system. To obtain the results we represent the Lax operator of the CM model in two different factorized forms—without spectral parameter (related to the spinless case) and another one with the spectral parameter. The latter gives rise to the rational top while the first one is related to generalized Cremmer–Gervais r-matrices. The gauge transformation relating the rational top and CM model provides the classical rational version of the IRF-Vertex correspondence. From the geometrical point of view it describes the modification of SL(N,C)-bundles over degenerated elliptic curve. In view of the Symplectic Hecke Correspondence the rational top is related to the rational spin CM model. Possible applications and generalizations of the suggested construction are discussed. In particular, the obtained r-matrix defines a class of KZB equations. (paper)

Recent progress in the application of R-matrix Floquet theory

International Nuclear Information System (INIS)

Hart van der, H.W.

2006-01-01

Complete test of publication follows. R-matrix Floquet theory was developed 15 years ago to describe the behaviour of real atomic systems in intense laser fields. The theory combines standard R-matrix theory to describe the atomic structure in detail and the Fourier-Floquet Ansatz to account for interactions due to the laser field. The theory can be employed for laser pulses with duration longer than 5 cycles, and has been applied with great success to a wide range of atoms. Recent developments in the application of R-matrix Floquet theory have focused on three different strands: noble-gas atoms subjected to laser light with near-optical wavelengths, double ionization, and multiphoton emission of inner-shell electrons. The interest in the first strand follows from the experimental and theoretical interest in the behaviour of He subjected to intense 390 nm laser light. We have recently established that the R-matrix Floquet approach can be used to determine He ionization rates at this wavelength for intensities up to 2.5 x 10 14 W/cm 2 , even though ionization requires absorption of at least 9 photons. The accuracy of the approach is excellent: a comparison with time-dependent calculations shows agreement well within 10%. Following this success, we extended the study to other noble-gas atoms of experimental interest, Ne and Ar. For these atoms, ionization requires absorption of at least 8 and 6 photons, respectively. The two other strands follow the experimental interest in the development of VUV and X-ray lasers, which will open up new avenues for investigation. Only outer electrons respond to a visible-light laser field, whereas all electrons cloud respond to an X-ray laser field. One example of such a multi-electron response is direct double ionisation of He, subjected to a laser field with photon energy of 45 eV. This process requires absorption of only two photons, one photon fewer than required for sequential double ionisation. This is due to the electron

Quasiclassical R-matrix theory of inelastic processes in collisions of electrons with HCl molecules

International Nuclear Information System (INIS)

Fabrikant, I.I.

1991-01-01

The R-matrix theory for the vibrational excitation and dissociative attachment in e-HCl collisions is developed. Only one pole in the R-matrix expansion is included. This allows for making a connection between the R-matrix and the nonlocal-complex-potential theories, and for obtaining the expression for the dissociative-attachment cross section without using the R-matrix radius in the internuclear coordinate. All matrix elements in the equation for the vibrational-excitation and dissociative-attachment amplitudes are calculated using the quasiclassical approach. We study how the results depend on the number of vibrational levels of the neutral molecule included in the theory and show how to exclude the vibrational continuum by a modification of the nonlocal-complex potential. The results for the vibrational-excitation cross sections are extremely sensitive to the behavior of the R-matrix potential curve near the point of crossing this curve with the potential curve of the neutral molecule. Particularly in some cases the cross section at the threshold peak exhibits the boomerang oscillations earlier found for HCl by Domcke [in Aspects of Electron-Molecule Scattering and Photoionization, edited by A. Herzenberg (AIP, New Haven, 1989), p. 169]. The dissociative-attachment cross sections are in reasonable agreement with experiment and with other theories

Use of shell model calculations in R-matrix studies of neutron-induced reactions

International Nuclear Information System (INIS)

Knox, H.D.

1986-01-01

R-matrix analyses of neutron-induced reactions for many of the lightest p-shell nuclei are difficult due to a lack of distinct resonance structure in the reaction cross sections. Initial values for the required R-matrix parameters, E,sub(lambda) and γsub(lambdac) for states in the compound system, can be obtained from shell model calculations. In the present work, the results of recent shell model calculations for the lithium isotopes have been used in R-matrix analyses of 6 Li+n and 7 Li+n reactions for E sub(n) 7 Li and 8 Li on the 6 Li+n and 7 Li+n reaction mechanisms and cross sections are discussed. (author)

R-matrix arising from affine Hecke algebras and its application to Macdonald's difference operators

International Nuclear Information System (INIS)

Kato, Shinichi

1994-01-01

We shall give a certain trigonometric R-matrix associated with each root system by using affine Hecke algebras. From this R-matrix, we derive a quantum Knizhnik-Zamolodchikov equation after Cherednik, and show that the solutions of this KZ equation yield eigenfunctions of Macdonald's difference operators. (orig.)

The Dirac operator on a finite domain and the R-matrix method

International Nuclear Information System (INIS)

Grant, I P

2008-01-01

Relativistic effects in electron-atom collisions and photo-excitation and -ionization processes increase in importance as the atomic number of the target atom grows and spin-dependent effects increase. A relativistic treatment in which electron motion is described using the Dirac Hamiltonian is then desirable. A version of the popular nonrelativistic R-matrix package incorporating terms from the Breit-Pauli Hamiltonian has been used for modelling such processes for some years. The fully relativistic Dirac R-matrix method has been less popular, but is becoming increasingly relevant for applications to heavy ion targets, where the need to use relativistic wavefunctions is more obvious. The Dirac R-matrix method has been controversial ever since it was first proposed by Goertzel (1948 Phys. Rev. 73 1463-6), and it is therefore important to confirm that recent elaborate and costly applications of the method, such as, Badnell et al (2004 J. Phys. B: At. Mol. Phys. 37 4589) and Ballance and Griffin (2007 J. Phys. B: At. Mol. Opt. Phys. 40 247-58), rest on secure foundations. The first part of this paper analyses the structure of the two-point boundary-value problem for the Dirac operator on a finite domain, from which we construct a unified derivation of the Schroedinger (nonrelativistic) and Dirac (relativistic) R-matrix methods. Suggestions that the usual relativistic theory is not well founded are shown to be without foundation

K-SHELL PHOTOIONIZATION OF NICKEL IONS USING R-MATRIX

International Nuclear Information System (INIS)

Witthoeft, M. C.; Bautista, M. A.; GarcIa, J.; Kallman, T. R.; Mendoza, C.; Palmeri, P.; Quinet, P.

2011-01-01

We present R-matrix calculations of photoabsorption and photoionization cross sections across the K edge of the Li-like to Ca-like ion stages of Ni. Level-resolved, Breit-Pauli calculations were performed for the Li-like to Na-like stages. Term-resolved calculations, which include the mass-velocity and Darwin relativistic corrections, were performed for the Mg-like to Ca-like ion stages. This data set is extended up to Fe-like Ni using the distorted wave approximation as implemented by AUTOSTRUCTURE. The R-matrix calculations include the effects of radiative and Auger dampings by means of an optical potential. The damping processes affect the absorption resonances converging to the K thresholds causing them to display symmetric profiles of constant width that smear the otherwise sharp edge at the K-shell photoionization threshold. These data are important for the modeling of features found in photoionized plasmas.

K-Shell Photoionization of Nickel Ions Using R-Matrix

Science.gov (United States)

Witthoeft, M. C.; Bautista, M. A.; Garcia, J.; Kallman, T. R.; Mendoza, C.; Palmeri, P.; Quinet, P.

2011-01-01

We present R-matrix calculations of photoabsorption and photoionization cross sections across the K edge of the Li-like to Ca-like ions stages of Ni. Level-resolved, Breit-Pauli calculations were performed for the Li-like to Na-like stages. Term-resolved calculations, which include the mass-velocity and Darwin relativistic corrections, were performed for the Mg-like to Ca-like ion stages. This data set is extended up to Fe-like Ni using the distorted wave approximation as implemented by AUTOSTRUCTURE. The R-matrix calculations include the effects of radiative and Auger dampings by means of an optical potential. The damping processes affect the absorption resonances converging to the K thresholds causing them to display symmetric profiles of constant width that smear the otherwise sharp edge at the K-shell photoionization threshold. These data are important for the modeling of features found in photoionized plasmas.

The classical trigonometric r-matrix for the quantum-deformed Hubbard chain

Energy Technology Data Exchange (ETDEWEB)

Beisert, Niklas, E-mail: nbeisert@aei.mpg.de [Max-Planck-Institut fuer Gravitationsphysik, Albert-Einstein-Institut, Am Muehlenberg 1, 14476 Potsdam (Germany)

2011-07-01

The one-dimensional Hubbard model is an exceptional integrable spin chain which is apparently based on a deformation of the Yangian for the superalgebra gl(2|2). Here we investigate the quantum deformation of the Hubbard model in the classical limit. This leads to a novel classical r-matrix of trigonometric kind. We derive the corresponding one-parameter family of Lie bialgebras as a deformation of the affine gl(2|2) Kac-Moody superalgebra. In particular, we discuss the affine extension as well as discrete symmetries, and we scan for simpler limiting cases, such as the rational r-matrix for the undeformed Hubbard model.

Ab initio R-matrix/Multi-channel Quantum Defect Theory applied to Molecular Core Excitation and Ionization

International Nuclear Information System (INIS)

Hiyama, M.; Kosugi, N.

2004-01-01

Full text: Ab initio R-matrix/MQDT approach, which is a combination of ab initio R-matrix techniques and the multi channel quantum defect theory (MQDT), has recently been developed by one of the present authors (MH) and Child, to successfully obtain the potential energy curves of Rydberg states converging to not only the lowest but also the higher ionized states. This approach is also applied to estimate the valence state interaction with Rydberg and continuum (ionization) channels. Very recently we have made an original ab initio polyatomic R-matrix/MQDT program package, GSCF4R based on Gaussian type basis functions for the bound and continuum states, to extensively study molecular excitation and ionization in the X-ray region as well as in the VUV region. We are going to report the results for core excitation and ionization of diatomic molecules such as NO and O 2 to show that the R-matrix/MQDT method is indispensable to describe the core-to-Rydberg states with the higher quantum number and the continuum states. These results lead us to the conclusion that the close-coupling approximation augmented with the correlation term within the R-matrix/MQDT formalism is powerful to calculate the Rydberg-valence mixing and the interchannel coupling between several core-ionized states

Recent R-matrix calculations and atomic data recommendations of relevance to iron impurities in fusion plasmas

International Nuclear Information System (INIS)

Berrington, K.A.

1991-01-01

A progress report on R-matrix calculations of electron impact excitation and opacity data for ionized Fe is given. This paper discusses aspects of modern calculations of the electron excitation process in atoms and ions. The Belfast Atomic Data Bank holds much data in this area, including data recommended in regular Atomic Data Workshops held to evaluate atomic data for the applications community: electron excitation data for Fe ions recommended at recent Workshops is summarised. The main R-matrix programs currently in use are described, and some recent R-matrix calculations on electron excitation in Fe ions are highlighted. Photoabsorption data for all elements up to Fe are also calculated using the R-matrix programs in the international Opacity Project, and a summary is given of the atomic data expected from the Project. Finally some possible future directions are outlined. (orig.)

Universal R-matrix for quantized (super) algebras

International Nuclear Information System (INIS)

Khoroshkin, S.M.; Tolstoj, V.N.

1991-01-01

For quantum deformations of finite-dimensional contragredient Lie (super)algebras an explicit formula for the universal R-matrix is given. This formula generalizes the analogous formulae for quantized semisimple Lie algebras obtained by M. Rosso, A.N. Kirillov and N. Reshetikhin, Yas.S. Soibelman and S.Z. Levendorskii. Approach is based on careful analysis of quantized rank 1 and 2 (super)algebras, a combinatorial structure of the root systems and algebraic properties of q-exponential functions. Quantum Weyl group is not used. 19 refs.; 2 tabs

Rate coefficients of open shell molecules and radicals: R-matrix ...

Indian Academy of Sciences (India)

2017-04-07

Apr 7, 2017 ... Rate coefficients of open shell molecules and radicals: R-matrix method. JASMEET SINGH1 ... lasers, study of structure of DNA and astrophysics which require a ..... [6] CCPForge, http://ccpforge.cse.rl.ac.uk/projects/ukrmol-in/.

Form factors in quantum integrable models with GL(3)-invariant R-matrix

Energy Technology Data Exchange (ETDEWEB)

Pakuliak, S., E-mail: pakuliak@theor.jinr.ru [Laboratory of Theoretical Physics, JINR, 141980 Dubna, Moscow Reg. (Russian Federation); Moscow Institute of Physics and Technology, 141700 Dolgoprudny, Moscow Reg. (Russian Federation); Institute of Theoretical and Experimental Physics, 117259 Moscow (Russian Federation); Ragoucy, E., E-mail: eric.ragoucy@lapth.cnrs.fr [Laboratoire de Physique Théorique LAPTH, CNRS and Université de Savoie, BP 110, 74941 Annecy-le-Vieux Cedex (France); Slavnov, N.A., E-mail: nslavnov@mi.ras.ru [Steklov Mathematical Institute, Moscow (Russian Federation)

2014-04-15

We study integrable models solvable by the nested algebraic Bethe ansatz and possessing GL(3)-invariant R-matrix. We obtain determinant representations for form factors of off-diagonal entries of the monodromy matrix. These representations can be used for the calculation of form factors and correlation functions of the XXX SU(3)-invariant Heisenberg chain.

On using of R-matrix approach for description of nucleon scattering by potential with diffuse edge

International Nuclear Information System (INIS)

Tertychnyj, G.Ya.; Yadrovskij, E.L.

1982-01-01

Problems of convergence of R-matrix method for calculation of scattering phases and bound states of neutrons in the Woods-Saxon potential are investigated. It is revealed that this convergence in respect to the number of R-matrix poles turns to be faster if the value of the parameter of boundary conditions bsub(ej)sup(0) is close to the value of logarithmic derivative of the function of continuous spectrum at given energy E and radius of joining a. Bound states are satisfactorily described in unipolar approximation in a wide range of energy and bsub(ej)sup(0) parameter variations. The conducted comparison of the R-matrix method with the method of numerical integration testifies to their equivalence irrespective of the choice of a and bsub(ej)sup(0) parameters, but under the condition that the R-matrix series comprises a large number of members

A 19-state R-matrix investigation of resonances in e--He scattering at low energies. Pt. 4

International Nuclear Information System (INIS)

Fon, W.C.; Lim, K.P.

1993-01-01

The authors have previously reported the 11-state and 19-state R-matrix calculations of 1 1 S-2 3,1 S and 1 1 S-2 3 P differential cross sections at low energies. In this paper, the same R-matrix calculations are extended to obtain the differential cross sections and the electron-photon coincidence parameters λ and |Χ| for the excitation of the ground state helium to the 2 1 P state. Convergence studies are carried out between the 11-state and 19-state R-matrix calculations. Only the 19-state R-matrix results are presented in full at scattering angles of 20 o , 30 o , 60 o , 90 o , 120 o and 140 o from the excitation threshold up to 23.8 eV. (author)

On the universal R-matrix for the Izergin-Korepin model

International Nuclear Information System (INIS)

Boos, Herman; Goehmann, Frank; Kluemper, Andreas; Nirov, Khazret S; Razumov, Alexander V

2011-01-01

We continue our exercises with the universal R-matrix based on the Khoroshkin and Tolstoy formula. Here we present our results for the case of the twisted affine Kac-Moody Lie algebra of type A (2) 2 . Our interest in this case is inspired by the fact that the Tzitzeica equation is associated with A (2) 2 in a similar way as the sine-Gordon equation is related to A (1) 1 . The fundamental spin-chain Hamiltonian is constructed systematically as the logarithmic derivative of the transfer matrix. L-operators of two types are obtained by using q-deformed oscillators. (paper)

R-matrix calculations for few-quark bound states

International Nuclear Information System (INIS)

Shalchi, M.A.; Hadizadeh, M.R.

2016-01-01

The R-matrix method is implemented to study the heavy charm and bottom diquark, triquark, tetraquark, and pentaquarks in configuration space, as the bound states of quark-antiquark, diquark-quark, diquark-antidiquark, and diquark-antitriquark systems, respectively. The mass spectrum and the size of these systems are calculated for different partial wave channels. The calculated masses are compared with recent theoretical results obtained by other methods in momentum and configuration spaces and also by available experimental data. (orig.)

R-matrix and q-covariant oscillators for Uq(sl(n|m))

International Nuclear Information System (INIS)

Leblanc, Y.; Wallet, J.C.

1993-02-01

An R-matrix formalism is used to construct covariant quantum oscillator algebras for U q (sl(n|m)). It is shown that the complete structure of the twisted oscillator algebras can be obtained from the properties of the intertwining matrix obeying a Hecke type relation, combined with covariance of the oscillators at the deformed level and associativity. The resulting twisted algebras, involving q-bosons and q-fermions, are invariant under natural q-transformations of the oscillators induced by the coproduct. (author) 11 refs

R-Matrix Theory of Atomic Collisions Application to Atomic, Molecular and Optical Processes

CERN Document Server

Burke, Philip George

2011-01-01

Commencing with a self-contained overview of atomic collision theory, this monograph presents recent developments of R-matrix theory and its applications to a wide-range of atomic molecular and optical processes. These developments include electron and photon collisions with atoms, ions and molecules required in the analysis of laboratory and astrophysical plasmas, multiphoton processes required in the analysis of superintense laser interactions with atoms and molecules and positron collisions with atoms and molecules required in antimatter studies of scientific and technologial importance. Basic mathematical results and general and widely used R-matrix computer programs are summarized in the appendices.

R-matrix calculations for electron impact excitation and their application in astrophysical plasmas

International Nuclear Information System (INIS)

Liang, G Y; Badnell, N R; Zhao, G; Del Zanna, G; Mason, H E; Storey, P J

2012-01-01

The large number of high-resolution spectra routinely recorded in the astrophysical and fusion communities leads to the need for an extensive set of accurate baseline atomic data. The advantages of the intermediate-coupling frame transformation (ICFT) R-matrix method make it feasible to provide excitation data along iso-electronic sequences (Z ≤ 36) at the high level of accuracy afforded by the R-matrix method. The resultant data helps to overcome the longstanding shortcomings in X-ray and EUV astronomy. This is one of the key goals of the UK Atomic Processes for Astrophysical Plasmas (APAP) network.

R-Matrix Codes for Charged-particle Induced Reactionsin the Resolved Resonance Region

Energy Technology Data Exchange (ETDEWEB)

Leeb, Helmut [Technical Univ. of Wien, Vienna (Austria); Dimitriou, Paraskevi [Intl Atomic Energy Agency (IAEA), Vienna (Austria); Thompson, Ian J. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

2017-01-01

A Consultant’s Meeting was held at the IAEA Headquarters, from 5 to 7 December 2016, to discuss the status of R-matrix codes currently used in calculations of charged-particle induced reaction cross sections at low energies. The meeting was a follow-up to the R-matrix Codes meeting held in December 2015, and served the purpose of monitoring progress in: the development of a translation code to enable exchange of input/output parameters between the various codes in different formats, fitting procedures and treatment of uncertainties, the evaluation methodology, and finally dissemination. The details of the presentations and technical discussions, as well as additional actions that were proposed to achieve all the goals of the meeting are summarized in this report.

Compilation and R-matrix analysis of Big Bang nuclear reaction rates

International Nuclear Information System (INIS)

Descouvemont, Pierre; Adahchour, Abderrahim; Angulo, Carmen; Coc, Alain; Vangioni-Flam, Elisabeth

2004-01-01

We use the R-matrix theory to fit low-energy data on nuclear reactions involved in Big Bang nucleosynthesis. Special attention is paid to the rate uncertainties which are evaluated on statistical grounds. We provide S factors and reaction rates in tabular and graphical formats

A flexible R package for nonnegative matrix factorization

Directory of Open Access Journals (Sweden)

Seoighe Cathal

2010-07-01

Full Text Available Abstract Background Nonnegative Matrix Factorization (NMF is an unsupervised learning technique that has been applied successfully in several fields, including signal processing, face recognition and text mining. Recent applications of NMF in bioinformatics have demonstrated its ability to extract meaningful information from high-dimensional data such as gene expression microarrays. Developments in NMF theory and applications have resulted in a variety of algorithms and methods. However, most NMF implementations have been on commercial platforms, while those that are freely available typically require programming skills. This limits their use by the wider research community. Results Our objective is to provide the bioinformatics community with an open-source, easy-to-use and unified interface to standard NMF algorithms, as well as with a simple framework to help implement and test new NMF methods. For that purpose, we have developed a package for the R/BioConductor platform. The package ports public code to R, and is structured to enable users to easily modify and/or add algorithms. It includes a number of published NMF algorithms and initialization methods and facilitates the combination of these to produce new NMF strategies. Commonly used benchmark data and visualization methods are provided to help in the comparison and interpretation of the results. Conclusions The NMF package helps realize the potential of Nonnegative Matrix Factorization, especially in bioinformatics, providing easy access to methods that have already yielded new insights in many applications. Documentation, source code and sample data are available from CRAN.

R-matrix and RR-matrix calculations for cross sections for photoionization of outermost subshell in nobile gas atoms

International Nuclear Information System (INIS)

Tiwary, S.N.

2000-02-01

Photon impact integral ionization cross section (σ) as well as photoelectron asymmetry parameter (β) for the reactions hν+Ne(1s 2 2s 2 2p 6 ) → Ne + (1s 2 2s 2 2p 5 ) + e - , hν+Ar(1s 2 2s 2 2p 6 3s 2 3p 6 ) → Ar + (1s 2 2s 2 2p 6 3s 2 3p 5 ) + e - , hν+Kr(1s 2 2s 2 2p 6 3s 2 3p 6 3d 10 4s 2 4p 6 ) → Kr + (1s 2 2s 2 2p 6 3s 2 3p 6 3d 10 4s 2 4p 5 ) + e - and hν+Xe(1s 2 2s 2 2p 6 3s 2 3p 6 3d 10 4s 2 4p 6 4d 10 5s 2 5p 6 ) → Xe + (1s 2 2s 2 2p 6 3s 2 3p 6 3d 10 4s 2 4p 6 4d 10 5s 2 5p 5 ) + e - have been calculated in the L-S and j-j coupling schemes using Hartree-Fock (HF) wavefunctions within the reliable non-relativistic R-matrix as well as relativistic R-matrix (RR-matrix) methods in both the length and velocity gauges in the energy range of experimental data available. Comparison is made with all available experimental data as well as other theoretical results. Our present theoretical investigation clearly demonstrates that there is a good agreement between our present R-matrix results and RR-matrix results as well as with other results in the case of neon which reflects that the correlation and relativity are not important in this case, in the energy range of present consideration. Whereas in the case of xenon (Z=54), the independent-particle approximation completely breaks down, i.e., HF cross sections are both qualitatively as well as quantitatively incorrect in the entire energy range which exhibit that the multielectron correlation as well as relativity are both important but interchannel interactions are more important than the intrachannel interaction and relativity for obtaining high precision results. (author)

Direct calculation of resonance energies and widths using an R-matrix approach

International Nuclear Information System (INIS)

Schneider, B.I.

1981-01-01

A modified R-matrix technique is presented which determines the eigenvalues and widths of resonant states by the direct diagonalization of a complex, non-Hermitian matrix. The method utilizes only real basis sets and requires a minimum of complex arithmetic. The method is applied to two problems, a set of coupled square wells and the Pi/sub g/ resonance of N 2 in the static-exchange approximation. The results of the calculation are in good agreement with other methods and converge very quickly with basis-set size

R-matrix analysis of the /sup 239/Pu neutron cross sections

Energy Technology Data Exchange (ETDEWEB)

Saussure, G. de; Perez, R.B.; Macklin, R.L.

1986-03-01

/sup 239/Pu neutron cross-section data in the resolved resonance region were analyzed with the R-Matrix Bayesian Program SAMMY. Below 30 eV the cross sections computed with the multilevel parameters are consistent with recent fission and transmission measurements as well as with older capture and alpha measurements. Above 30 eV no suitable transmission data were available and only fission cross-section measurements were analyzed. However, since the analysis conserves the complete covariance matrix, the analysis can be updated by the Bayes method as transmission measurements become available. To date, the analysis of the fission measurements has been completed up to 300 eV.

The R-matrix investigation of 8Li(α, n)11B reaction below 6 MeV

Science.gov (United States)

Kilic, Ali Ihsan; Muecher, Dennis; Garret, Paul; Svensson, Carl

2017-09-01

The investigation of cross sections for the 8Li(α, n)11B reaction has important impact for both primordial nucleosynthesis in the inhomogeneous models as well as constraining the physical conditions characterizing the r-process. However, there are large discrepancies existing between inclusive and exclusive measurements of the cross section below 3 MeV. The R-Matrix technique is a powerful tool for the analysis of the nuclear data for the purpose of extracting level information of compound nucleus 12B and extrapolation of the astrophysical S-Factor to Gamow energies. We have applied the R-matrix calculations for the 8Li(α, n)11B reaction and will present results for both the reaction rates and the partial S-factor. Combining the direct reaction contribution with the results from our R-matrix calculations, we can well describe the experimental data from the inclusive measurements. However, new experiments are needed in order to understand the role of neutron detection close to the threshold, for which we describe our experimental plans at ISAC, TRIUMF, using the newly developed DESCANT array.

User's guide for SAMMY: a computer model for multilevel r-matrix fits to neutron data using Bayes' equations

International Nuclear Information System (INIS)

Larson, N.M.; Perey, F.G.

1980-11-01

A method is described for determining the parameters of a model from experimental data based upon the utilization of Bayes' theorem. This method has several advantages over the least-squares method as it is commonly used; one important advantage is that the assumptions under which the parameter values have been determined are more clearly evident than in many results based upon least squares. Bayes' method has been used to develop a computer code which can be utilized to analyze neutron cross-section data by means of the R-matrix theory. The required formulae from the R-matrix theory are presented, and the computer implementation of both Bayes' equations and R-matrix theory is described. Details about the computer code and compelte input/output information are given

Forbidden transitions in excitation by electron impact in Co3+: an R-matrix approach

International Nuclear Information System (INIS)

Stancalie, V

2011-01-01

Collision strengths for the electron-impact excitation of forbidden transitions between 136 terms arising from 3d 6 , 3d 5 4s and 3d 5 4p configurations of Co 3+ have been calculated using the R-matrix method. The accuracy of a series of models for the target terms was considered, which form the basis for R-matrix collision calculations. The importance of including configuration interaction wave functions both in the target-state expansion and in the (N+1)-electron quadratically integrable function expansion is discussed. Collision strengths were calculated for incident electron energies up to 6 Ryd. These results are believed to be the first such values for this system and will be important for plasma modelling.

R-matrix parameters in reactor applications

International Nuclear Information System (INIS)

Hwang, R.N.

1992-01-01

The key role of the resonance phenomena in reactor applications manifests through the self-shielding effect. The basic issue involves the application of the microscopic cross sections in the macroscopic reactor lattices consisting of many nuclides that exhibit resonance behavior. To preserve the fidelity of such a effect requires the accurate calculations of the cross sections and the neutron flux in great detail. This clearly not possible without viable resonance data. Recently released ENDF/B VI resonance data in the resolved range especially reflect the dramatic improvement in two important areas; namely, the significant extension of the resolved resonance ranges accompanied by the availability of the R-matrix parameters of the Reich-Moore type. Aside from the obvious increase in computing time required for the significantly greater number of resonances, the main concern is the compatibility of the Riech-Moore representation to the existing reactor processing codes which, until now, are based on the traditional cross section formalisms. This purpose of this paper is to summarize our recent efforts to facilitate implementation of the proposed methods into the production codes at ANL

Application of R-matrix theory to resonant reactive electron-molecule scattering: Vibrational excitation and dissociative attachment of N2 and F2

International Nuclear Information System (INIS)

Wong, C.F.; Light, J.C.

1984-01-01

Based on the R-matrix approach of Schneider et al. [J. Phys. B 12, L 365 (1979)] to reactive electron-molecule scattering, a new propagative R-matrix method (PRMM) is presented which is more appropriate for polyatomic systems. The new method should be useful in other calculations where complicated integrals need to be propagated. We also introduce an effective R-matrix model (ERMM) in which the usual resonance parameters (potential and width) can be used as input in model R-matrix calculations. The PRMM and ERMM have been applied to the electron-N 2 system and the electron-F 2 system. The results agree very well with previous calculations for both vibrationally inelastic scattering and dissociative attachment when identical potentials and parameters are used

An R-matrix study of electron induced processes in BF3 plasma

Science.gov (United States)

Gupta, Dhanoj; Chakrabarti, Kalyan; Yoon, Jung-Sik; Song, Mi-Young

2017-12-01

An R-matrix formalism is used to study electron collision with the BF3 molecule using Quantemol-N, a computational system for electron molecule collisions which uses the molecular R-matrix method. Several target models are tested for BF3 in its equilibrium geometry, and the results are presented for the best model. Scattering calculations are then performed to yield resonance parameters, elastic, differential, excitation, and momentum transfer cross sections. The results for all the cross sections are compared with the experimental and theoretical data, and a good agreement is obtained. The resonances have been detected at 3.79 and 13.58 eV, with the ionization threshold being 15.7 eV. We have also estimated the absolute dissociative electron attachment (DEA) cross section for the F- ion production from BF3, which is a maiden attempt. The peak of the DEA is at around 13.5 eV, which is well supported by the resonance detected at 13.58 eV. The cross sections reported here find a variety of applications in the plasma technology.

miR-132 Regulates Dendritic Spine Structure by Direct Targeting of Matrix Metalloproteinase 9 mRNA.

Science.gov (United States)

Jasińska, Magdalena; Miłek, Jacek; Cymerman, Iwona A; Łęski, Szymon; Kaczmarek, Leszek; Dziembowska, Magdalena

2016-09-01

Mir-132 is a neuronal activity-regulated microRNA that controls the morphology of dendritic spines and neuronal transmission. Similar activities have recently been attributed to matrix metalloproteinase-9 (MMP-9), an extrasynaptic protease. In the present study, we provide evidence that miR-132 directly regulates MMP-9 mRNA in neurons to modulate synaptic plasticity. With the use of luciferase reporter system, we show that miR-132 binds to the 3'UTR of MMP-9 mRNA to regulate its expression in neurons. The overexpression of miR-132 in neurons reduces the level of endogenous MMP-9 protein secretion. In synaptoneurosomes, metabotropic glutamate receptor (mGluR)-induced signaling stimulates the dissociation of miR-132 from polyribosomal fractions and shifts it towards the messenger ribonucleoprotein (mRNP)-containing fraction. Furthermore, we demonstrate that the overexpression of miR-132 in the cultured hippocampal neurons from Fmr1 KO mice that have increased synaptic MMP-9 level provokes enlargement of the dendritic spine heads, a process previously implicated in enhanced synaptic plasticity. We propose that activity-dependent miR-132 regulates structural plasticity of dendritic spines through matrix metalloproteinase 9.

Models based on multichannel R-matrix theory for evaluating light element reactions

International Nuclear Information System (INIS)

Dodder, D.C.; Hale, G.M.; Nisley, R.A.; Witte, K.; Young, P.G.

1975-01-01

Multichannel R-matrix theory has been used as a basis for models for analysis and evaluation of light nuclear systems. These models have the characteristic that data predictions can be made utilizing information derived from other reactions related to the one of primary interest. Several examples are given where such an approach is valid and appropriate. (auth.)

Efficient diagonalization of the sparse matrices produced within the framework of the UK R-matrix molecular codes

Science.gov (United States)

Galiatsatos, P. G.; Tennyson, J.

2012-11-01

The most time consuming step within the framework of the UK R-matrix molecular codes is that of the diagonalization of the inner region Hamiltonian matrix (IRHM). Here we present the method that we follow to speed up this step. We use shared memory machines (SMM), distributed memory machines (DMM), the OpenMP directive based parallel language, the MPI function based parallel language, the sparse matrix diagonalizers ARPACK and PARPACK, a variation for real symmetric matrices of the official coordinate sparse matrix format and finally a parallel sparse matrix-vector product (PSMV). The efficient application of the previous techniques rely on two important facts: the sparsity of the matrix is large enough (more than 98%) and in order to get back converged results we need a small only part of the matrix spectrum.

Construction of the R-matrix for three-dimensional, reactive atom--diatom scattering: application to H+H2

International Nuclear Information System (INIS)

Stechel, E.B.; Walker, R.B.; Light, J.C.

1977-01-01

In an extension of previous work (R.B. Walker, J.C. Light and A. Altenberger-Siczek, J. Chem. Phys. 64, 1166(1976)), equations for the accurate quantum mechanical treatment of three body rearrangement collisions are presented in the R-matrix language. These equations describe how the solutions to Schrodinger's equation in three separate regions of configuration space (each containing one asymptotic atom + diatom arrangement) are matched smoothly to each other. The symmetry of the matching equations is discussed in detail. Within the R-matrix formalism, unitary S-matrices may be constructed for arbitrary atom-diatom mass combinations and for small target wave function basis expansions. Applications of this method to the three dimensional H + H 2 (labelled nuclei) exchange reaction are reported, and comparison is made to prior work

Estimation of neutron cross-sections for 16O up to 5.2 MeV through R-matrix analysis

International Nuclear Information System (INIS)

Kunieda, Satoshi; Kawano, Toshihiko; Shibata, Keiichi; Fukahori, Tokio; Paris, Mark; Hale, Gerry

2014-01-01

There are differences among experimental cross-sections for 16 O, which make the evaluated data still uncertain. R-matrix is rigorous and straightforward to the quantum mechanical theory. We estimate the neutron cross-sections for 16 O up to 5.2 MeV through R-matrix analysis. In this work, particular attention is paid to issues in the scale of (n,α) reaction cross-sections and hydrogen contents in some of the experimental total cross-sections. Our preliminary results suggest that those problems could be solved/reduced due to the physical constraints imposed by the theory. (authors)

Implementation of the CCGM approximation for surface diffraction using Wigner R-matrix theory

International Nuclear Information System (INIS)

Lauderdale, J.G.; McCurdy, C.W.

1983-01-01

The CCGM approximation for surface scattering proposed by Cabrera, Celli, Goodman, and Manson [Surf. Sci. 19, 67 (1970)] is implemented for realistic surface interaction potentials using Wigner R-matrix theory. The resulting procedure is highly efficient computationally and is in no way limited to hard wall or purely repulsive potentials. Comparison is made with the results of close-coupling calculations of other workers which include the same diffraction channels in order to fairly evaluate the CCGM approximation which is an approximation to the coupled channels Lippman--Schwinger equation for the T matrix. The shapes of selective adsorption features, whether maxima or minima, in the scattered intensity are well represented in this approach for cases in which the surface corrugation is not too strong

The matrix elements of the potential energy operator between the Sp(2,R) basis generating functions. Near-magic nuclei

International Nuclear Information System (INIS)

Filippov, G.F.; Ovcharenko, V.I.; Teryoshin, Yu.V.

1980-01-01

For near-magnetic nuclei, the matrix elements of the central exchange nucleon-nucleon interaction potential energy operator between the generating functions of the total basis of the Sn are obtained. The basis states are highest weigt vectorsp(2,R) irreducible representatio of the SO(3) irredicible representation and in addition, have a definite O(A-1) symmetry. The Sp(2,R) basis generating matrix elements simplify essentially the problem of calculating the spectrum of collective excitations of the atomic nucleus over an intrinsic function of definite O(A-1) symmetry

R-Matrix Evaluation of 16O neutron cross sections up to 6.3 MeV

International Nuclear Information System (INIS)

Sayer, R.O.; Leal, L.C.; Larson, N.M.; Spencer, R.R.; Wright, R.Q.

2000-01-01

In this paper the authors describe an evaluation of 16 O neutron cross sections in the resolved resonance region with the multilevel Reich-Moore R-matrix formalism. Resonance analyses were performed with the computer code SAMMY [LA98] which utilizes Bayes' method, a generalized least squares technique

Computing wave functions in multichannel collisions with non-local potentials using the R-matrix method

Science.gov (United States)

Bonitati, Joey; Slimmer, Ben; Li, Weichuan; Potel, Gregory; Nunes, Filomena

2017-09-01

The calculable form of the R-matrix method has been previously shown to be a useful tool in approximately solving the Schrodinger equation in nuclear scattering problems. We use this technique combined with the Gauss quadrature for the Lagrange-mesh method to efficiently solve for the wave functions of projectile nuclei in low energy collisions (1-100 MeV) involving an arbitrary number of channels. We include the local Woods-Saxon potential, the non-local potential of Perey and Buck, a Coulomb potential, and a coupling potential to computationally solve for the wave function of two nuclei at short distances. Object oriented programming is used to increase modularity, and parallel programming techniques are introduced to reduce computation time. We conclude that the R-matrix method is an effective method to predict the wave functions of nuclei in scattering problems involving both multiple channels and non-local potentials. Michigan State University iCER ACRES REU.

Application of R-Matrix with Time-dependence Theory to Double Ionisation Using a 2-electron Outer Region

International Nuclear Information System (INIS)

Wragg, Jack; Parker, J S; Van der Hart, H W

2015-01-01

R-Matrix with Time-dependence (RMT) theory has been extended to cover double-ionisation processes. An application to photoionisation of He is demonstrated, with an emphasis on double-ionisation cross sections. (paper)

The R-matrix of the Uq(d4(3)) algebra and g2(1) affine Toda field theory

International Nuclear Information System (INIS)

Takacs, G.

1997-01-01

The R-matrix of the U q (d 4 (3) ) algebra is constructed in the 8-dimensional fundamental representation. Using this result, an exact S-matrix is conjectured for the imaginary coupled g 2 (1) affine Toda field theory, the structure of which is found to be very similar to the previously investigated S-matrix of d 4 (3) Toda theory. It is shown that this S-matrix is consistent with the results for the case of real coupling using the breather-particle correspondence. For q a root of unity it is argued that the theory can be restricted to yield Φ(11 vertical stroke 12) perturbations of WA 2 minimal models. (orig.)

R-matrix analysis of the 239Pu cross sections up to 1 keV

International Nuclear Information System (INIS)

Derrien, H.; de Saussure, G.; Perez, R.B.; Larson, N.M.; Macklin, R.L.

1986-06-01

The results are reported of an R-matrix resonance analysis of the 239 Pu neutron cross sections up to 1 keV. After a description of the method of analysis the nearly 1600 resonance parameters obtained are listed and extensive graphical and numerical comparisons between calculated and measured cross-section and transmission date are presented. 47 refs., 47 figs., 8 tabs

Spermidine promotes Bacillus subtilis biofilm formation by activating expression of the matrix regulator slrR.

Science.gov (United States)

Hobley, Laura; Li, Bin; Wood, Jennifer L; Kim, Sok Ho; Naidoo, Jacinth; Ferreira, Ana Sofia; Khomutov, Maxim; Khomutov, Alexey; Stanley-Wall, Nicola R; Michael, Anthony J

2017-07-21

Ubiquitous polyamine spermidine is not required for normal planktonic growth of Bacillus subtilis but is essential for robust biofilm formation. However, the structural features of spermidine required for B. subtilis biofilm formation are unknown and so are the molecular mechanisms of spermidine-stimulated biofilm development. We report here that in a spermidine-deficient B. subtilis mutant, the structural analogue norspermidine, but not homospermidine, restored biofilm formation. Intracellular biosynthesis of another spermidine analogue, aminopropylcadaverine, from exogenously supplied homoagmatine also restored biofilm formation. The differential ability of C-methylated spermidine analogues to functionally replace spermidine in biofilm formation indicated that the aminopropyl moiety of spermidine is more sensitive to C -methylation, which it is essential for biofilm formation, but that the length and symmetry of the molecule is not critical. Transcriptomic analysis of a spermidine-depleted B. subtilis speD mutant uncovered a nitrogen-, methionine-, and S -adenosylmethionine-sufficiency response, resulting in repression of gene expression related to purine catabolism, methionine and S -adenosylmethionine biosynthesis and methionine salvage, and signs of altered membrane status. Consistent with the spermidine requirement in biofilm formation, single-cell analysis of this mutant indicated reduced expression of the operons for production of the exopolysaccharide and TasA protein biofilm matrix components and SinR antagonist slrR Deletion of sinR or ectopic expression of slrR in the spermidine-deficient Δ speD background restored biofilm formation, indicating that spermidine is required for expression of the biofilm regulator slrR Our results indicate that spermidine functions in biofilm development by activating transcription of the biofilm matrix exopolysaccharide and TasA operons through the regulator slrR . © 2017 by The American Society for Biochemistry and

Risk Measures and Contagion Matrix: an Application of CoVaR for the Brazilian Financial Market

Directory of Open Access Journals (Sweden)

Aléssio Tony Cavalcanti de Almeida

2012-12-01

Full Text Available The main point of this work is to assess how a financial distress in return series of the major Brazilian companies assets and relevant domestic market (Ibovespa and main international index (Dow Jones interact with each other, in an attempt to capture spillover effects. We try to capture the systemic risk, the contagion effect and the stress test. This paper uses the methodology CoVaR, described in the Adrian and Brunnermeier (2011 which use quantile regression. The main innovation of this work is the construction and estimation of the contagion matrix to domestic capital market. The results show that there is no relationship between risk measurements given by Value at Risk (VaR and CoVaR, moreover the systemic risk shows those assets that generate more negative externalities for the domestic financial market. The stress test indicates that a distress in domestic market indicator returns have more spillover effects on domestic papers than a distress in the international market returns. Finally, the contagion matrix reveals that the interrelationships of contagion between the firms’ returns are relevant sectorial evidence for assessment and management of risks.

Updated users' guide for SAMMY: multilevel R-matrix fits to neutron data using Bayes' equations. Revision 1

International Nuclear Information System (INIS)

Larson, N.M.

1985-04-01

In 1980 the multilevel multichannel R-matrix code SAMMY was released for use in analysis of neutron data at the Oak Ridge Electron Linear Accelerator. Since that time, SAMMY has undergone significant modifications: (1) User-friendly options have been incorporated to streamline common operations and to protect a run from common user errors. (2) The Reich-Moore formalism has been extended to include an optional logarithmic parameterization of the external R-matrix, for which any or all parameters may be varied. (3) The ability to vary sample thickness, effective temperature, matching radius, and/or resolution-broadening parameters has been incorporated. (4) To avoid loss of information (i.e., computer round-off errors) between runs, the ''covariance file'' now includes precise values for all variables. (5) Unused but correlated variables may be included in the analysis. Because of these and earlier changes, the 1980 SAMMY manual is now obsolete. This report is intended to be complete documentation for the current version of SAMMY. In August of 1984 the users' guide for version P of the multilevel multichannel R-matrix code SAMMY was published. Recently, major changes within SAMMY have led to the creation of version O, which is documented in this report. Among these changes are: (1) an alternative matrix-manipulation method for use in certain special cases; (2) division of theoretical cross-section generation and broadening operations into separate segments of the code; (3) an option to use the multilevel Breit-Wigner approximation to generate theoretical cross sections; (4) new input options; (5) renaming all temporary files as SAM...DAT; (6) more sophisticated use of temporary files to maximize the number of data points that may be analyzed in a single run; and (7) significant internal restructing of the code in preparation for changes described here and for planned future changes

Photo double-ionization of helium: a new approach combining R matrix and semiclassical techniques in an hyperspherical framework

International Nuclear Information System (INIS)

Malegat, L.; Kazansky, A.; Selles, P.

1999-01-01

We introduce a new method for computing photo double ionization (PDI) cross sections for two electron atoms. It is formulated in terms of the hyperspherical radius R and relies upon a combination of R matrix techniques in the inner region R≤R 0 with a semiclassical approximation for the R motion in the outer region. We present a first application of this method to the PDI of He within a model of reduced dimensionality where r 1 =r 2 . It demonstrates the validity of our numerical scheme and provides a first quantitative estimate of the energy domain of validity of the Wannier mechanism. (orig.)

beachmat: A Bioconductor C++ API for accessing high-throughput biological data from a variety of R matrix types.

Directory of Open Access Journals (Sweden)

Aaron T L Lun

2018-05-01

Full Text Available Biological experiments involving genomics or other high-throughput assays typically yield a data matrix that can be explored and analyzed using the R programming language with packages from the Bioconductor project. Improvements in the throughput of these assays have resulted in an explosion of data even from routine experiments, which poses a challenge to the existing computational infrastructure for statistical data analysis. For example, single-cell RNA sequencing (scRNA-seq experiments frequently generate large matrices containing expression values for each gene in each cell, requiring sparse or file-backed representations for memory-efficient manipulation in R. These alternative representations are not easily compatible with high-performance C++ code used for computationally intensive tasks in existing R/Bioconductor packages. Here, we describe a C++ interface named beachmat, which enables agnostic data access from various matrix representations. This allows package developers to write efficient C++ code that is interoperable with dense, sparse and file-backed matrices, amongst others. We evaluated the performance of beachmat for accessing data from each matrix representation using both simulated and real scRNA-seq data, and defined a clear memory/speed trade-off to motivate the choice of an appropriate representation. We also demonstrate how beachmat can be incorporated into the code of other packages to drive analyses of a very large scRNA-seq data set.

beachmat: A Bioconductor C++ API for accessing high-throughput biological data from a variety of R matrix types.

Science.gov (United States)

Lun, Aaron T L; Pagès, Hervé; Smith, Mike L

2018-05-01

Biological experiments involving genomics or other high-throughput assays typically yield a data matrix that can be explored and analyzed using the R programming language with packages from the Bioconductor project. Improvements in the throughput of these assays have resulted in an explosion of data even from routine experiments, which poses a challenge to the existing computational infrastructure for statistical data analysis. For example, single-cell RNA sequencing (scRNA-seq) experiments frequently generate large matrices containing expression values for each gene in each cell, requiring sparse or file-backed representations for memory-efficient manipulation in R. These alternative representations are not easily compatible with high-performance C++ code used for computationally intensive tasks in existing R/Bioconductor packages. Here, we describe a C++ interface named beachmat, which enables agnostic data access from various matrix representations. This allows package developers to write efficient C++ code that is interoperable with dense, sparse and file-backed matrices, amongst others. We evaluated the performance of beachmat for accessing data from each matrix representation using both simulated and real scRNA-seq data, and defined a clear memory/speed trade-off to motivate the choice of an appropriate representation. We also demonstrate how beachmat can be incorporated into the code of other packages to drive analyses of a very large scRNA-seq data set.

beachmat: A Bioconductor C++ API for accessing high-throughput biological data from a variety of R matrix types

Science.gov (United States)

Pagès, Hervé

2018-01-01

Biological experiments involving genomics or other high-throughput assays typically yield a data matrix that can be explored and analyzed using the R programming language with packages from the Bioconductor project. Improvements in the throughput of these assays have resulted in an explosion of data even from routine experiments, which poses a challenge to the existing computational infrastructure for statistical data analysis. For example, single-cell RNA sequencing (scRNA-seq) experiments frequently generate large matrices containing expression values for each gene in each cell, requiring sparse or file-backed representations for memory-efficient manipulation in R. These alternative representations are not easily compatible with high-performance C++ code used for computationally intensive tasks in existing R/Bioconductor packages. Here, we describe a C++ interface named beachmat, which enables agnostic data access from various matrix representations. This allows package developers to write efficient C++ code that is interoperable with dense, sparse and file-backed matrices, amongst others. We evaluated the performance of beachmat for accessing data from each matrix representation using both simulated and real scRNA-seq data, and defined a clear memory/speed trade-off to motivate the choice of an appropriate representation. We also demonstrate how beachmat can be incorporated into the code of other packages to drive analyses of a very large scRNA-seq data set. PMID:29723188

The Fourier-grid formalism: philosophy and application to scattering problems using R-matrix theory

International Nuclear Information System (INIS)

Layton, E.G.

1993-01-01

The Fourier-grid (FG) method is a recent L 2 variational treatment of the quantum mechanical eigenvalue problem that does not require the use of a set of basis functions; it is rather a discrete variable representation approach. In this article we restate the FG philosophy in more general terms, examine and compare this method with other approaches to the eigenvalue problem, and begin the development of an FG R-matrix method for scattering. The philosophy of the FG method is to use the simplest representation for each of the kinetic and potential energy operators of the Hamiltonian, and use a generalized Fourier transform to put the matrix elements of one of the above operators in the same representation as the other, so the Hamiltonian has a single representation. (author)

Updated users' guide for SAMMY: Multilevel R-matrix fits to neutron data using Bayes' equation

International Nuclear Information System (INIS)

Larson, N.M.

1989-06-01

In 1980 the multilevel multichannel R-matrix code SAMMY was released for use in analysis of neutron data at the Oak Ridge Electron Linear Accelerator. Since that time, SAMMY has undergone significant modifications: user-friendly options have been incorporated to streamline common operations and to protect a run from common user errors; the Reich-Moore formalism has been extended to include an optional logarithmic parameterization of the external R-matrix, for which any or all parameters may be varied; the ability to vary sample thickness, effective temperature, matching radius, and/or resolution-broadening parameters has been incorporated; to avoid loss of information (i.e., computer round-off errors) between runs, the ''covariance file'' now includes precise values for all variables; and unused but correlated variables may be included in the analysis. Because of these and earlier changes, the 1980 SAMMY manual is now hopelessly obsolete. This report is intended to be complete documentation for the current version of SAMMY. Its publication in looseleaf form will permit updates to the manual to be made concurrently with updates to the code itself, thus eliminating most of the time lag between update and documentation. 28 refs., 54 tabs

Updated user's guide for SAMMY: multilevel R-matrix fits to neutron data using Bayes' equation

International Nuclear Information System (INIS)

Larson, N.M.

1996-01-01

In 1980 the multilevel multichannel R-matrix code SAMMY was released for use in analysis of neutron data at the Oak Ridge Electron Linear Accelerator. Since that time, SAMMY has undergone significant modifications: (1) User-friendly options have been incorporated to streamline common operations and to protect a run from common user errors, (2) The Reich-Moore formalism has been extended to include an optional logarithmic parameterization of the external R-matrix, for which any or all parameters may be varied, (3) the ability to vary sample thickness, effective temperature, matching radius, and/or resolution-broadening parameters has been incorporated, (4) to avoid loss of information (i.e. computer round-off errors) between runs, the ''covariance file'' now includes precise values for al variables, (5) Unused but correlated variables may be included in the analysis. Because of these and earlier changes, the 1980 SAMMY manual is now hopelessly obsolete. This report is intended to be complete documentation for the current version of SAMMY. Its publication in looseleaf form will permit updates to the manual to be made concurrently with updates to the code itself, thus eliminating most of the time lag between update and documentation

R-matrix study of ionization in barium via two-photon interfering routes

International Nuclear Information System (INIS)

Aymar, M.; Luc-Koenig, E.; Lecomte, J. M.; Millet, M.; Lyras, A.

2000-01-01

A quantitative analysis of part of the experimental data reported by Wang, Chen and Elliott [1,3] who studied in barium coherent control through two-color resonant interfering paths is reported. Dynamics of the two-color photoionization process, described as an adiabatic process in the rotating wave approximation, is governed by the coherent excitation of the 6s6p and 6s7p 1 P 1 intermediate states. Interference effects are found to play a minor role. The required atomic parameters are obtained from a theoretical approach based on a combination of jj-coupled eigenchannel R-matrix and Multichannel Quantum Defect Theory

R&D of MCFC matrix for long term operation

Energy Technology Data Exchange (ETDEWEB)

Nishimura, Takashi; Fujita, Yoji; Urushibata, Hiroaki; Sasaki, Akira [Mitsubishi Electric Corp., Hyogo (Japan)

1996-12-31

Long term operation is an essential subject in the commercialization of the Molten Carbonate Fuel Cell (MCFC). Material stability is important for the development of the MCFC. particularly for long term operation. In this paper, the specification and the stabilization of MCFC matrix arc investigated, with the aim of producing 40000 hours of operation. It is common knowledge that matrix thickness has a large influence on shorting time, as shorting is caused by the dissolution of the nickel oxide cathodes. Therefore, the optimum thickness of a matrix designed for 40000 hours operation without the nickel shorting was sought. The influences of different electrolytes and matrix specifications on the shorting time were measured with accelerated cell tests. The internal resistance of the matrix was also estimated. Gamma( {gamma} )-lithium aluminate (LiAlO{sub 2}) powder with a sub-micron particle diameter is commonly used for a raw material of matrix to retain molten carbonate electrolytes. This is because most researchers found that {gamma}-LiA1O{sub 2} was the most stable material in the MCFC environment among the three allotropic forms alpha ( {alpha} ), beta ( {beta} ), and {gamma}. However. two problems with the stability of {gamma} -LiAlO{sub 2} are being vigorously discussed. especially in Japan: particle growth causes decreasing electrolyte retention, and the transformation of {gamma} to {alpha}. This transformation contradicts the accepted opinion that {gamma} is the most stable form. In this paper, the particle growth and the phase transformation of LiAlO{sub 2} are examined with post-test analyses. The influence of matrix degradation on cell performance is also considered.

R-Matrix Analysis of Structures in Economic Indices: from Nuclear Reactions to High-Frequency Trading

International Nuclear Information System (INIS)

Firk, Frank W K

2014-01-01

It is shown that the R-matrix theory of nuclear reactions is a viable mathematical theory for the description of the fine, intermediate and gross structure observed in the time-dependence of economic indices in general, and the daily Dow Jones Industrial Average in particular. A Lorentzian approximation to R-matrix theory is used to analyze the complex structures observed in the Dow Jones Industrial Average on a typical trading day. Resonant structures in excited nuclei are characterized by the values of their fundamental strength function, (average total width of the states)/(average spacing between adjacent states). Here, values of the ratios (average lifetime of individual states of a given component of the daily Dow Jones Industrial Average)/(average interval between the adjacent states) are determined. The ratios for the observed fine and intermediate structure of the index are found to be essentially constant throughout the trading day. These quantitative findings are characteristic of the highly statistical nature of many-body, strongly interacting systems, typified by daily trading. It is therefore proposed that the values of these ratios, determined in the first hour-or-so of trading, be used to provide valuable information concerning the likely performance of the fine and intermediate components of the index for the remainder of the trading day

Dirac R-matrix calculations of electron-impact excitation of neon-like krypton

Energy Technology Data Exchange (ETDEWEB)

Griffin, D C; Ballance, C P [Department of Physics, Rollins College, Winter Park, FL 32789 (United States); Mitnik, D M [Instituto de Astronomia y Fisica del Espacio, and Departamento de Fisica, Universidad de Buenos Aires (Argentina); Berengut, J C [School of Physics, University of New South Wales, Sydney 2052 (Australia)

2008-11-14

We have employed the Dirac R-matrix method to determine electron-impact excitation cross sections and effective collision strengths in Ne-like Kr{sup 26+}. Both the configuration-interaction expansion of the target and the close-coupling expansion employed in the scattering calculation included 139 levels up through n = 5. Many of the cross sections are found to exhibit very strong resonances, yet the effects of radiation damping on the resonance contributions are relatively small. Using these collisional data along with multi-configuration Dirac-Fock radiative rates, we have performed collisional-radiative modeling calculations to determine line-intensity ratios for various radiative transitions that have been employed for diagnostics of other Ne-like ions.

R-matrix analysis of the 235U neutron cross sections

International Nuclear Information System (INIS)

Leal, L.C.; de Saussure, G.; Perez, R.B.

1988-01-01

The ENDFB-V representation of the 235 U neutron cross sections in the resolved resonance region is unsatisfactory: below 1 eV the cross sections are given by ''smooth files'' (file 3) rather than by resonance parameters; above 1 eV the single-level formalism used by ENDFB-V necessitates a structured file 3 contribution consisting of more than 1300 energy points; furthermore, information on level-spins has not been included. Indeed the ENDFB-V 235 U resonance region is based on an analysis done in 1970 for ENDFB-III and therefore does not include the results of high quality measurements done in the past 18 years. The present paper presents the result of an R-matrix multilevel analysis of recent measurements as well as older data. The analysis also extends the resolved resonance region from its ENDFB-V upper limit of 81 eV to 110 eV. 13 refs., 2 figs., 1 tab

Subthreshold resonances and resonances in the R -matrix method for binary reactions and in the Trojan horse method

Science.gov (United States)

Mukhamedzhanov, A. M.; Shubhchintak, Bertulani, C. A.

2017-08-01

In this paper we discuss the R -matrix approach to treat the subthreshold resonances for the single-level and one-channel and for the single-level and two-channel cases. In particular, the expression relating the asymptotic normalization coefficient (ANC) with the observable reduced width, when the subthreshold bound state is the only channel or coupled with an open channel, which is a resonance, is formulated. Since the ANC plays a very important role in nuclear astrophysics, these relations significantly enhance the power of the derived equations. We present the relationship between the resonance width and the ANC for the general case and consider two limiting cases: wide and narrow resonances. Different equations for the astrophysical S factors in the R -matrix approach are presented. After that we discuss the Trojan horse method (THM) formalism. The developed equations are obtained using the surface-integral formalism and the generalized R -matrix approach for the three-body resonant reactions. It is shown how the Trojan horse (TH) double-differential cross section can be expressed in terms of the on-the-energy-shell astrophysical S factor for the binary subreaction. Finally, we demonstrate how the THM can be used to calculate the astrophysical S factor for the neutron generator 13C(α ,n )16O in low-mass AGB stars. At astrophysically relevant energies this astrophysical S factor is controlled by the threshold level 1 /2+,Ex=6356 keV. Here, we reanalyzed recent TH data taking into account more accurately the three-body effects and using both assumptions that the threshold level is a subthreshold bound state or it is a resonance state.

The tensor hypercontracted parametric reduced density matrix algorithm: coupled-cluster accuracy with O(r(4)) scaling.

Science.gov (United States)

Shenvi, Neil; van Aggelen, Helen; Yang, Yang; Yang, Weitao; Schwerdtfeger, Christine; Mazziotti, David

2013-08-07

Tensor hypercontraction is a method that allows the representation of a high-rank tensor as a product of lower-rank tensors. In this paper, we show how tensor hypercontraction can be applied to both the electron repulsion integral tensor and the two-particle excitation amplitudes used in the parametric 2-electron reduced density matrix (p2RDM) algorithm. Because only O(r) auxiliary functions are needed in both of these approximations, our overall algorithm can be shown to scale as O(r(4)), where r is the number of single-particle basis functions. We apply our algorithm to several small molecules, hydrogen chains, and alkanes to demonstrate its low formal scaling and practical utility. Provided we use enough auxiliary functions, we obtain accuracy similar to that of the standard p2RDM algorithm, somewhere between that of CCSD and CCSD(T).

Separation of variables in anisotropic models and non-skew-symmetric elliptic r-matrix

Science.gov (United States)

Skrypnyk, Taras

2017-05-01

We solve a problem of separation of variables for the classical integrable hamiltonian systems possessing Lax matrices satisfying linear Poisson brackets with the non-skew-symmetric, non-dynamical elliptic so(3)⊗ so(3)-valued classical r-matrix. Using the corresponding Lax matrices, we present a general form of the "separating functions" B( u) and A( u) that generate the coordinates and the momenta of separation for the associated models. We consider several examples and perform the separation of variables for the classical anisotropic Euler's top, Steklov-Lyapunov model of the motion of anisotropic rigid body in the liquid, two-spin generalized Gaudin model and "spin" generalization of Steklov-Lyapunov model.

Inverse Interval Matrix: A Survey

Czech Academy of Sciences Publication Activity Database

Rohn, Jiří; Farhadsefat, R.

2011-01-01

Roč. 22, - (2011), s. 704-719 E-ISSN 1081-3810 R&D Projects: GA ČR GA201/09/1957; GA ČR GC201/08/J020 Institutional research plan: CEZ:AV0Z10300504 Keywords : interval matrix * inverse interval matrix * NP-hardness * enclosure * unit midpoint * inverse sign stability * nonnegative invertibility * absolute value equation * algorithm Subject RIV: BA - General Mathematics Impact factor: 0.808, year: 2010 http://www.math.technion.ac.il/iic/ ela / ela -articles/articles/vol22_pp704-719.pdf

Matrix models as non-commutative field theories on R3

International Nuclear Information System (INIS)

Livine, Etera R

2009-01-01

In the context of spin foam models for quantum gravity, group field theories are a useful tool allowing on the one hand a non-perturbative formulation of the partition function and on the other hand admitting an interpretation as generalized matrix models. Focusing on 2d group field theories, we review their explicit relation to matrix models and show their link to a class of non-commutative field theories invariant under a quantum-deformed 3d Poincare symmetry. This provides a simple relation between matrix models and non-commutative geometry. Moreover, we review the derivation of effective 2d group field theories with non-trivial propagators from Boulatov's group field theory for 3d quantum gravity. Besides the fact that this gives a simple and direct derivation of non-commutative field theories for the matter dynamics coupled to (3d) quantum gravity, these effective field theories can be expressed as multi-matrix models with a non-trivial coupling between matrices of different sizes. It should be interesting to analyze this new class of theories, both from the point of view of matrix models as integrable systems and for the study of non-commutative field theories.

Differentiation of Clinically Relevant mucorales Rhizopus microsporus and R. arrhizus by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS)

NARCIS (Netherlands)

Dolatabadi, S.; Kolecka, A.; Versteeg, Matthijs; de Hoog, Sybren G; Boekhout, Teun

This study addresses the usefulness of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) for reliable identification of the two most frequently occuring clinical species of Rhizopus, namely R. arrhizus with its two varieties arrhizus and delemar and R.

miR-346 and miR-582-3p-regulated EG-VEGF expression and trophoblast invasion via matrix metalloproteinases 2 and 9.

Science.gov (United States)

Su, Mei-Tsz; Tsai, Pei-Yin; Tsai, Hui-Ling; Chen, Yi-Chi; Kuo, Pao-Lin

2017-03-01

Endocrine gland-derived vascular endothelial growth factor (EG-VEGF) is an important regulator for embryo implantation and placental development, and is clinically associated with several obstetric disorders related to insufficient or inappropriate trophoblast invasion, such as recurrent abortion, preeclampsia, and intrauterine fetal growth restriction. This study was performed to identify the microRNAs targeting EG-VEGF, and evaluate the regulatory effect on trophoblast biology. miR-346 and miR-582-3p were initially identified via bioinformatic tools, and their specific binding sites on the EG-VEGF 3'UTR were further confirmed using dual luciferase and a co-transfection assays. miR-346 and miR-582-3p were demonstrated not only to suppress EG-VEGF expression, but also inhibit trophoblast invasion and migration in the JAR and HTR-8/SVneo cell lines. We further evaluated the effect of microRNAs in HTR-8/SVneo cells coexpressing EG-VEGF and miR-346 or miR-582-3p on matrix metalloproteinase (MMP 2 and MMP 9) and the tissue inhibitors of metalloproteinase (TIMP 1 and TIMP 2) using RT-PCR, western blotting and gelatin zymography. TIMP 1 and TIMP 2 were not affected by the two microRNAs, whereas the expressions and activities of MMP 2 and MMP 9 were significantly downregulated, which in turn inhibited the invasion ability of trophoblasts. In conclusion, miR-346 and miR-582-3p regulate EG-VEGF-induced trophoblast invasion through repressing MMP 2 and MMP 9, and may become novel diagnostic biomarkers or therapeutic targets for EG-VEGF-related obstetric disorders. © 2016 BioFactors, 43(2):210-219, 2017. © 2016 International Union of Biochemistry and Molecular Biology.

Time-dependent B-spline R-matrix approach to double ionization of atoms by XUV laser pulses

Energy Technology Data Exchange (ETDEWEB)

Guan Xiaoxu; Zatsarinny, Oleg; Bartschat, Klaus [Department of Physics and Astronomy, Drake University, Des Moines, Iowa 50311 (United States); Noble, Clifford J [Computational Science and Engineering Department, Daresbury Laboratory, Warrington WA4 4AD (United Kingdom); Schneider, Barry I, E-mail: xiaoxu.guan@drake.ed, E-mail: klaus.bartschat@drake.ed, E-mail: bschneid@nsf.go [Physics Division, National Science Foundation, Arlington, Virgina 22230 (United States)

2009-11-01

We present an ab initio and non-perturbative time-dependent approach to the problem of double ionization of a general atom driven by intense XUV laser pulses. After using a highly flexible B-spline R-matrix method to generate field-free Hamiltonian and electric dipole matrices, the initial state is propagated in time using an efficient Arnoldi-Lanczos scheme. Example results for momentum and energy distributions of the two outgoing electrons in two-color pump-probe processes of He are presented.

A large-scale R-matrix calculation for electron-impact excitation of the Ne2 +, O-like ion

OpenAIRE

McLaughlin , B M; Lee , Teck-Ghee; Ludlow , J A; Landi , E; Loch , S D; Pindzola , M S; Ballance , C P

2011-01-01

Abstract The five J? levels within a np2 or np4 ground state complex provide an excellent testing ground for the comparison of theoretical line ratios with astrophysically observed values, in addition to providing valuable electron temperature and density diagnostics. The low temperature nature of the line ratios ensure that the theoretically derived values are sensitive to the underlying atomic structure and electron-impact excitation rates. Previous R- matrix calculations for the O-like ...

Inequalities Involving Upper Bounds for Certain Matrix Operators

Indian Academy of Sciences (India)

Home; Journals; Proceedings – Mathematical Sciences; Volume 116; Issue 3. Inequalities Involving Upper Bounds for Certain Matrix Operators. R Lashkaripour D Foroutannia. Volume ... Keywords. Inequality; norm; summability matrix; Hausdorff matrix; Hilbert matrix; weighted sequence space; Lorentz sequence space.

Matrix orderings and their associated skew fields

International Nuclear Information System (INIS)

Mahdavi-Hezavehi, M.

1990-08-01

Matrix orderings on rings are investigated. It is shown that in the commutative case they are essentially positive cones. This is proved by reducing it to the field case; similarly one can show that on a skew field, matrix positive cones can be reduced to positive cones by using the Dieudonne determinant. Our main result shows that there is a natural bijection between the matrix positive cones on a ring R and the ordered epic R-fields. (author). 7 refs

Extracellular matrix organization in developing muscle: correlation with acetylcholine receptor aggregates.

Science.gov (United States)

Bayne, E K; Anderson, M J; Fambrough, D M

1984-10-01

Monoclonal antibodies recognizing laminin, heparan sulfate proteoglycan, fibronectin, and two apparently novel connective tissue components have been used to examine the organization of extracellular matrix of skeletal muscle in vivo and in vitro. Four of the five monoclonal antibodies are described for the first time here. Immunocytochemical experiments with frozen-sectioned muscle demonstrated that both the heparan sulfate proteoglycan and laminin exhibited staining patterns identical to that expected for components of the basal lamina. In contrast, the remaining matrix constituents were detected in all regions of muscle connective tissue: the endomysium, perimysium, and epimysium. Embryonic muscle cells developing in culture elaborated an extracellular matrix, each antigen exhibiting a unique distribution. Of particular interest was the organization of extracellular matrix on myotubes: the build-up of matrix components was most apparent in plaques overlying clusters of an integral membrane protein, the acetylcholine receptor (AChR). The heparan sulfate proteoglycan was concentrated at virtually all AChR clusters and showed a remarkable level of congruence with receptor organization; laminin was detected at 70-95% of AChR clusters but often was not completely co-distributed with AChR within the cluster; fibronectin and the two other extracellular matrix antigens occurred at approximately 20, 8, and 2% of the AChR clusters, respectively, and showed little or no congruence with AChR. From observations on the distribution of extracellular matrix components in tissue cultured fibroblasts and myogenic cells, several ideas about the organization of extracellular matrix are suggested. (a) Congruence between AChR clusters and heparan sulfate proteoglycan suggests the existence of some linkage between the two molecules, possibly important for regulation of AChR distribution within the muscle membrane. (b) The qualitatively different patterns of extracellular matrix

R-matrix calculations for electron-impact excitation of C(+), N(2+), and O(3+) including fine structure

Science.gov (United States)

Luo, D.; Pradhan, A. K.

1990-01-01

The new R-matrix package for comprehensive close-coupling calculations for electron scattering with the first three ions in the boron isoelectronic sequence, the astrophysically significant C(+), N(2+), and O(3+), is presented. The collision strengths are calculated in the LS coupling approximation, as well as in pair-coupling scheme, for the transitions among the fine-structure sublevels. Calculations are carried out at a large number of energies in order to study the detailed effects of autoionizing resonances.

Matrix precipitation: a general strategy to eliminate matrix interference for pharmaceutical toxic impurities analysis.

Science.gov (United States)

Yang, Xiaojing; Xiong, Xuewu; Cao, Ji; Luan, Baolei; Liu, Yongjun; Liu, Guozhu; Zhang, Lei

2015-01-30

Matrix interference, which can lead to false positive/negative results, contamination of injector or separation column, incompatibility between sample solution and the selected analytical instrument, and response inhibition or even quenching, is commonly suffered for the analysis of trace level toxic impurities in drug substance. In this study, a simple matrix precipitation strategy is proposed to eliminate or minimize the above stated matrix interference problems. Generally, a sample of active pharmaceutical ingredients (APIs) is dissolved in an appropriate solvent to achieve the desired high concentration and then an anti-solvent is added to precipitate the matrix substance. As a result, the target analyte is extracted into the mixed solution with very less residual of APIs. This strategy has the characteristics of simple manipulation, high recovery and excellent anti-interference capability. It was found that the precipitation ratio (R, representing the ability to remove matrix substance) and the proportion of solvent (the one used to dissolve APIs) in final solution (P, affecting R and also affecting the method sensitivity) are two important factors of the precipitation process. The correlation between R and P was investigated by performing precipitation with various APIs in different solvent/anti-solvent systems. After a detailed mathematical reasoning process, P=20% was proved to be an effective and robust condition to perform the precipitation strategy. The precipitation method with P=20% can be used as a general strategy for toxic impurity analysis in APIs. Finally, several typical examples are described in this article, where the challenging matrix interference issues have been resolved successfully. Copyright © 2014 Elsevier B.V. All rights reserved.

Assignment of 1H, 13C, and 15N resonances of WT matrix protein and its R55F mutant from Mason-Pfizer monkey virus

Czech Academy of Sciences Publication Activity Database

Vlach, J.; Lipov, J.; Veverka, V.; Rumlová, Michaela; Ruml, T.; Hrabal, R.

2005-01-01

Roč. 31, - (2005), s. 381-382 ISSN 0925-2738 R&D Projects: GA ČR GA203/03/0490 Institutional research plan: CEZ:AV0Z4055905 Keywords : Mason-Pfizer monkey virus * NMR resonance assignment * matrix protein Subject RIV: CE - Biochemistry Impact factor: 2.180, year: 2005

The Involvement of miR-29b-3p in Arterial Calcification by Targeting Matrix Metalloproteinase-2

Directory of Open Access Journals (Sweden)

Wenhong Jiang

2017-01-01

Full Text Available Vascular calcification is a risk predictor and common pathological change in cardiovascular diseases that are associated with elastin degradation and phenotypic transformation of vascular smooth muscle cells via gelatinase matrix metalloproteinase-2 (MMP2. However, the mechanisms involved in this process remain unclear. In this study, we investigated the relationships between miR-29b-3p and MMP2, to confirm miR-29b-3p-mediated MMP2 expression at the posttranscriptional level in arterial calcification. In male Sprague Dawley rats, arterial calcification was induced by subcutaneous injection of a toxic dose of cholecalciferol. In vivo, the quantitative real-time polymerase chain reaction (qRT-PCR showed that MMP2 expression was upregulated in calcified arterial tissues, and miR-29b-3p expression was downregulated. There was a negative correlation between MMP2 mRNA expression and miR-29b-3p levels (P=0.0014, R2=0.481. Western blotting showed that MMP2 expression was significantly increased in rats treated with cholecalciferol. In vitro, overexpression of miR-29b-3p led to decreased MMP2 expression in rat vascular smooth muscle cells, while downregulation of miR-29b-3p expression led to increased MMP2 expression. Moreover, the luciferase reporter assay confirmed that MMP2 is the direct target of miR-29b-3p. Together, our results demonstrated that a role of miR-29b-3p in vascular calcification involves targeting MMP2.

Structure of 14C via elastic and inelastic neutron scattering from 13C: Measurement, R-matrix analysis, and shell model calculations

International Nuclear Information System (INIS)

Resler, D.A.

1987-03-01

The specific purpose of this work is to provide a better understanding of the 14 C level structure; the general purpose is to provide the details for using shell model calculations in R-matrix analyses. Using the TOF facilities of the Ohio University Accelerator Laboratory, the elastic and first 3 inelastic differential scattering cross sections for 13 C + n were measured at 69 energies for 4.5 ≤ E/sub n/ ≤ 11 MeV. A multiple scattering code was developed which provided a simulation of the experimental scattering process allowing accurate corrections to the small inelastic data. The integrated 13 C(n,α) 10 Be cross section is estimated. The sequential 2n-decay of 14 C states populated by 13 C + n was observed. A shell model code was developed. Normal and nonnormal parity calculations were made for the lithium isotopes using a new two-body interaction. The results for 5 Li predict the 2s/sub 1/2/ and 1d/sub 5/2/ single-particle states to be located below the 3/2 + state. Similar calculations were made for 13 C, 13 N, and 14 C. Results for 13 C and 13 N show for E/sub x/ 7 Li and 14 C, 2 h-barω calculations were done. Shell model calculations generated the R-matrix parameters for the elastic and first 3 inelastic channels of 13 C + n. After adjusting some energies, the predicted structure generally agrees with experiment for E/sub n/ 13 C + n data were refit to replace R 0 background terms by more realistic broad states and to get better agreement with model calculations. R-matrix fitting of the full data set produced new 14 C level information. For E/sub n/ > 4 MeV (E/sub x/ > 12 MeV), 5 states are given definite J/sup π/ assignments; 3, tentative assignments. 122 refs., 91 figs., 30 tabs

P-matrix in the quark compound bag model

International Nuclear Information System (INIS)

Kalashnikova, Yu.S.; Narodetskij, I.M.; Veselov, A.I.

1983-01-01

Meaning of the P-matrix analysis is discussed within the quark compound bag (QCB) model. The most general version of this model is considered including the arbitrary coupling between quark and hadronic channels and the arbitrary smearipg of the surface interection region. The behaviour of P-matrix poles as functions of matching radius r,L0 is discussed for r 0 > + . In conclusion are presented the parameters of an illustrative set of NN potentials that has been obtained from the P-matrix fit to experimental data

Dysregulated miR-127-5p contributes to type II collagen degradation by targeting matrix metalloproteinase-13 in human intervertebral disc degeneration.

Science.gov (United States)

Hua, Wen-Bin; Wu, Xing-Huo; Zhang, Yu-Kun; Song, Yu; Tu, Ji; Kang, Liang; Zhao, Kang-Cheng; Li, Shuai; Wang, Kun; Liu, Wei; Shao, Zeng-Wu; Yang, Shu-Hua; Yang, Cao

2017-08-01

Intervertebral disc degeneration (IDD) is a chronic disease associated with the degradation of extracellular matrix (ECM). Matrix metalloproteinase (MMP)-13 is a major enzyme that mediates the degradation of ECM components. MMP-13 has been predicted to be a potential target of miR-127-5p. However, the exact function of miR-127-5p in IDD is still unclear. We designed this study to evaluate the correlation between miR-127-5p level and the degeneration of human intervertebral discs and explore the potential mechanisms. miR-127-5p levels and MMP-13 mRNA levels were detected by quantitative real-time polymerase chain reaction (qPCR). To determine whether MMP-13 is a target of miR-127-5p, dual luciferase reporter assays were performed. miR-127-5p mimic and miR-127-5p inhibitor were used to overexpress or downregulate miR-127-5p expression in human NP cells, respectively. Small interfering RNA (siRNA) was used to knock down MMP-13 expression in human NP cells. Type II collagen expression in human NP cells was detected by qPCR, western blotting, and immunofluorescence staining. We confirmed that miR-127-5p was significantly downregulated in nucleus pulposus (NP) tissue of degenerative discs and its expression was inversely correlated with MMP-13 mRNA levels. We reveal that MMP-13 may act as a target of miR-127-5p. Expression of miR-127-5p was inversely correlated with type II collagen expression in human NP cells. Moreover, suppression of MMP-13 expression by siRNA blocked downstream signaling and increased type II collagen expression. Dysregulated miR-127-5p contributed to the degradation of type II collagen by targeting MMP-13 in human IDD. Our findings highlight that miR-127-5p may serve as a new therapeutic target in IDD. Copyright © 2017 Elsevier B.V. and Société Française de Biochimie et Biologie Moléculaire (SFBBM). All rights reserved.

Electron-impact study of PO2 using the R-matrix method

Science.gov (United States)

Bharadvaja, Anand; Kaur, Savinder; Baluja, K. L.

2013-06-01

The R-matrix approach is used to study the electron scattering from PO2 radical at low electron impact energies. The elastic scattering phenomenon is studied in static-exchange, one-state and many-states close-coupling approximation. The elastic differential cross sections, corresponding momentum-transfer cross sections, and collision frequency are calculated in the one-state configuration interaction approximation only. Calculations reveal a stable bound state of PO2- having symmetry 1A1, a configuration of ⋯8a12,⋯2b12,⋯5b22,⋯1a22, and vertical electron affinity of 2.94 eV. The excited state of anion PO2- having symmetry 3B1 is also just bound relative to the ground state of PO2 at its equilibrium geometry. The shape, core-excited, and Feshbach resonances are analyzed in different symmetries up to 7 eV. The partial waves up to l=4 are used to represent continuum electron. The converged cross sections are obtained for the partial waves having l greater than 4 by applying Born correction. Certain interesting spectroscopic properties of radical are also reported.

The fastclime Package for Linear Programming and Large-Scale Precision Matrix Estimation in R.

Science.gov (United States)

Pang, Haotian; Liu, Han; Vanderbei, Robert

2014-02-01

We develop an R package fastclime for solving a family of regularized linear programming (LP) problems. Our package efficiently implements the parametric simplex algorithm, which provides a scalable and sophisticated tool for solving large-scale linear programs. As an illustrative example, one use of our LP solver is to implement an important sparse precision matrix estimation method called CLIME (Constrained L 1 Minimization Estimator). Compared with existing packages for this problem such as clime and flare, our package has three advantages: (1) it efficiently calculates the full piecewise-linear regularization path; (2) it provides an accurate dual certificate as stopping criterion; (3) it is completely coded in C and is highly portable. This package is designed to be useful to statisticians and machine learning researchers for solving a wide range of problems.

Extracellular matrix component signaling in cancer

DEFF Research Database (Denmark)

Multhaupt, Hinke A. B.; Leitinger, Birgit; Gullberg, Donald

2016-01-01

Cell responses to the extracellular matrix depend on specific signaling events. These are important from early development, through differentiation and tissue homeostasis, immune surveillance, and disease pathogenesis. Signaling not only regulates cell adhesion cytoskeletal organization and motil...... as well as matrix constitution and protein crosslinking. Here we summarize roles of the three major matrix receptor types, with emphasis on how they function in tumor progression. [on SciFinder(R)]...

Optimising parallel R correlation matrix calculations on gene expression data using MapReduce.

Science.gov (United States)

Wang, Shicai; Pandis, Ioannis; Johnson, David; Emam, Ibrahim; Guitton, Florian; Oehmichen, Axel; Guo, Yike

2014-11-05

High-throughput molecular profiling data has been used to improve clinical decision making by stratifying subjects based on their molecular profiles. Unsupervised clustering algorithms can be used for stratification purposes. However, the current speed of the clustering algorithms cannot meet the requirement of large-scale molecular data due to poor performance of the correlation matrix calculation. With high-throughput sequencing technologies promising to produce even larger datasets per subject, we expect the performance of the state-of-the-art statistical algorithms to be further impacted unless efforts towards optimisation are carried out. MapReduce is a widely used high performance parallel framework that can solve the problem. In this paper, we evaluate the current parallel modes for correlation calculation methods and introduce an efficient data distribution and parallel calculation algorithm based on MapReduce to optimise the correlation calculation. We studied the performance of our algorithm using two gene expression benchmarks. In the micro-benchmark, our implementation using MapReduce, based on the R package RHIPE, demonstrates a 3.26-5.83 fold increase compared to the default Snowfall and 1.56-1.64 fold increase compared to the basic RHIPE in the Euclidean, Pearson and Spearman correlations. Though vanilla R and the optimised Snowfall outperforms our optimised RHIPE in the micro-benchmark, they do not scale well with the macro-benchmark. In the macro-benchmark the optimised RHIPE performs 2.03-16.56 times faster than vanilla R. Benefiting from the 3.30-5.13 times faster data preparation, the optimised RHIPE performs 1.22-1.71 times faster than the optimised Snowfall. Both the optimised RHIPE and the optimised Snowfall successfully performs the Kendall correlation with TCGA dataset within 7 hours. Both of them conduct more than 30 times faster than the estimated vanilla R. The performance evaluation found that the new MapReduce algorithm and its

Matrix-isolation studies on alkali-metal phosphates

International Nuclear Information System (INIS)

Jenny, S.N.; Ogden, J.S.

1979-01-01

This paper describes the results of a matrix-isolation i.r. study on the vaporisation of trisodium orthophosphate. When this material is heated in vacuo to ca. 1600 K, and the products condensed in a low-temperature argon matrix, the i.r. spectrum obtained is shown to be due to a trapped species NaPO 3 . With the aid of 18 O-enrichment, this molecule is shown to have a Csub(2v) bidentate structure with characteristic i.r. bands at 1 341.7, 1 211.1, 1 004.0, 536.6, 474.0 and 287.0 cm -1 . (author)

Explicit Inverse of an Interval Matrix with Unit Midpoint

Czech Academy of Sciences Publication Activity Database

Rohn, Jiří

2011-01-01

Roč. 22, - (2011), s. 138-150 E-ISSN 1081-3810 R&D Projects: GA ČR GA201/09/1957; GA ČR GC201/08/J020 Institutional research plan: CEZ:AV0Z10300504 Keywords : interval matrix * unit midpoint * inverse interval matrix * regularity Subject RIV: BA - General Mathematics Impact factor: 0.808, year: 2010 http://www.math.technion.ac.il/iic/ ela / ela -articles/articles/vol22_pp138-150.pdf

Distributively generated matrix near rings

International Nuclear Information System (INIS)

Abbasi, S.J.

1993-04-01

It is known that if R is a near ring with identity then (I,+) is abelian if (I + ,+) is abelian and (I,+) is abelian if (I*,+) is abelian [S.J. Abbasi, J.D.P. Meldrum, 1991]. This paper extends these results. We show that if R is a distributively generated near ring with identity then (I,+) is included in Z(R), the center of R, if (I + ,+) is included in Z(M n (R)), the center of matrix near ring M n (R). Furthermore (I,+) is included in Z(R) if (I*,+) is included in Z(M n (R)). (author). 5 refs

Associative Yang-Baxter equation for quantum (semi-)dynamical R-matrices

International Nuclear Information System (INIS)

Sechin, Ivan; Zotov, Andrei

2016-01-01

In this paper we propose versions of the associative Yang-Baxter equation and higher order R-matrix identities which can be applied to quantum dynamical R-matrices. As is known quantum non-dynamical R-matrices of Baxter-Belavin type satisfy this equation. Together with unitarity condition and skew-symmetry it provides the quantum Yang-Baxter equation and a set of identities useful for different applications in integrable systems. The dynamical R-matrices satisfy the Gervais-Neveu-Felder (or dynamical Yang-Baxter) equation. Relation between the dynamical and non-dynamical cases is described by the IRF (interaction-round-a-face)-Vertex transformation. An alternative approach to quantum (semi-)dynamical R-matrices and related quantum algebras was suggested by Arutyunov, Chekhov, and Frolov (ACF) in their study of the quantum Ruijsenaars-Schneider model. The purpose of this paper is twofold. First, we prove that the ACF elliptic R-matrix satisfies the associative Yang-Baxter equation with shifted spectral parameters. Second, we directly prove a simple relation of the IRF-Vertex type between the Baxter-Belavin and the ACF elliptic R-matrices predicted previously by Avan and Rollet. It provides the higher order R-matrix identities and an explanation of the obtained equations through those for non-dynamical R-matrices. As a by-product we also get an interpretation of the intertwining transformation as matrix extension of scalar theta function likewise R-matrix is interpreted as matrix extension of the Kronecker function. Relations to the Gervais-Neveu-Felder equation and identities for the Felder’s elliptic R-matrix are also discussed.

On Best Approximations of Polynomials in Matrices in the Matrix 2-Norm

Czech Academy of Sciences Publication Activity Database

Liesen, J.; Tichý, Petr

2009-01-01

Roč. 31, č. 2 (2009), s. 853-863 ISSN 0895-4798 R&D Projects: GA AV ČR IAA100300802 Institutional research plan: CEZ:AV0Z10300504 Keywords : matrix approximation problems * polynomials in matrices * matrix functions * matrix 2-norm * GMRES * Arnoldi's method Subject RIV: BA - General Mathematics Impact factor: 2.411, year: 2009

Self-consistent ab initio Calculations for Photoionization and Electron-Ion Recombination Using the R-Matrix Method

Science.gov (United States)

Nahar, S. N.

2003-01-01

Most astrophysical plasmas entail a balance between ionization and recombination. We present new results from a unified method for self-consistent and ab initio calculations for the inverse processes of photoionization and (e + ion) recombination. The treatment for (e + ion) recombination subsumes the non-resonant radiative recombination and the resonant dielectronic recombination processes in a unified scheme (S.N. Nahar and A.K. Pradhan, Phys. Rev. A 49, 1816 (1994);H.L. Zhang, S.N. Nahar, and A.K. Pradhan, J.Phys.B, 32,1459 (1999)). Calculations are carried out using the R-matrix method in the close coupling approximation using an identical wavefunction expansion for both processes to ensure self-consistency. The results for photoionization and recombination cross sections may also be compared with state-of-the-art experiments on synchrotron radiation sources for photoionization, and on heavy ion storage rings for recombination. The new experiments display heretofore unprecedented detail in terms of resonances and background cross sections and thereby calibrate the theoretical data precisely. We find a level of agreement between theory and experiment at about 10% for not only the ground state but also the metastable states. The recent experiments therefore verify the estimated accuracy of the vast amount of photoionization data computed under the OP, IP and related works. features. Present work also reports photoionization cross sections including relativistic effects in the Breit-Pauli R-matrix (BPRM) approximation. Detailed features in the calculated cross sections exhibit the missing resonances due to fine structure. Self-consistent datasets for photoionization and recombination have so far been computed for approximately 45 atoms and ions. These are being reported in a continuing series of publications in Astrophysical J. Supplements (e.g. references below). These data will also be available from the electronic database TIPTOPBASE (http://heasarc.gsfc.nasa.gov)

R matrix analysis of 239Pu neutron cross sections in the energy range up to 1000 eV

International Nuclear Information System (INIS)

de Saussure, G.; Perez, R.B.

1990-01-01

This paper reports on the results of an R matrix analysis of the 239 Pu neutron cross sections up to 1000-eV neutron energy. The analysis was performed with the multilevel multichannel Reich-Moore code SAMMY. The method of analysis is describe, and the selection of experimental data is discussed. Some tabular and graphical comparisons between calculated and measured cross sections and transmissions are presented. The statistical properties of the resonance parameters are examined. The resonance parameters are proposed for the new evaluated data files ENDF/B-VI and JEF2

A time-dependent B-spline R-matrix approach to double ionization of atoms by XUV laser pulses

Energy Technology Data Exchange (ETDEWEB)

Guan Xiaoxu; Zatsarinny, O; Noble, C J; Bartschat, K [Department of Physics and Astronomy, Drake University, Des Moines, IA 50311 (United States); Schneider, B I [Physics Division, National Science Foundation, Arlington, Virgina 22230 (United States)], E-mail: xiaoxu.guan@drake.edu, E-mail: oleg.zatsarinny@drake.edu, E-mail: cjn@maxnet.co.nz, E-mail: klaus.bartschat@drake.edu, E-mail: bschneid@nsf.gov

2009-07-14

We present an ab initio and non-perturbative time-dependent approach to the problem of double ionization of a general atom driven by intense XUV laser pulses. After using a highly flexible B-spline R-matrix method to generate field-free Hamiltonian and electric dipole matrices, the initial state is propagated in time using an efficient Arnoldi-Lanczos scheme. Test calculations for double ionization of He by a single laser pulse yield good agreement with benchmark results obtained with other methods. The method is then applied to two-colour pump-probe processes, for which momentum and energy distributions of the two outgoing electrons are presented.

MiR-34a/miR-93 target c-Ski to modulate the proliferaton of rat cardiac fibroblasts and extracellular matrix deposition in vivo and in vitro.

Science.gov (United States)

Zhang, Chengliang; Zhang, Yanfeng; Zhu, Hong; Hu, Jiajia; Xie, Zhongshang

2018-06-01

Cardiac fibrosis is associated with diverse heart diseases. In response to different pathological irritants, cardiac fibroblasts may be induced to proliferate and differentiate into cardiac myofibroblasts, thus contributing to cardiac fibrosis. TGF-β signaling is implicated in the development of heart failure through the induction of cardiac fibrosis. C-Ski, an inhibitory regulator of TGF-β signaling, has been reported to suppress TGF-β1-induced human cardiac fibroblasts' proliferation and ECM protein increase; however, the underlying molecular mechanism needs further investigation. In the present study, we demonstrated that c-Ski could ameliorate isoproterenol (ISO)-induced rat myocardial fibrosis model and TGF-β1-induced primary rat cardiac fibroblasts' proliferation, as well as extracellular matrix (ECM) deposition. The protein level of c-Ski was dramatically decreased in cardiac fibrosis and TGF-β1-stimulated primary rat cardiac fibroblasts. In recent decades, a family of small non-coding RNA, namely miRNAs, has been reported to regulate gene expression by interacting with diverse mRNAs and inducing either translational suppression or mRNA degradation. Herein, we selected miR-34a and miR-93 as candidate miRNAs that might target to regulate c-Ski expression. After confirming that miR-34a/miR-93 targeted c-Ski to inhibit its expression, we also revealed that miR-34a/miR-93 affected TGF-β1-induced fibroblasts' proliferation and ECM deposition through c-Ski. Taken together, we demonstrated a miR-34a/miR-93-c-Ski axis which modulates TGF-β1- and ISO-induced cardiac fibrosis in vitro and in vivo; targeting the inhibitory factors of c-Ski to rescue its expression may be a promising strategy for the treatment of cardiac fibrosis. Copyright © 2018 Elsevier Inc. All rights reserved.

H∞ /H2 model reduction through dilated linear matrix inequalities

DEFF Research Database (Denmark)

Adegas, Fabiano Daher; Stoustrup, Jakob

2012-01-01

This paper presents sufficient dilated linear matrix inequalities (LMI) conditions to the $H_{infty}$ and $H_{2}$ model reduction problem. A special structure of the auxiliary (slack) variables allows the original model of order $n$ to be reduced to an order $r=n/s$ where $n,r,s in field{N}$. Arb......This paper presents sufficient dilated linear matrix inequalities (LMI) conditions to the $H_{infty}$ and $H_{2}$ model reduction problem. A special structure of the auxiliary (slack) variables allows the original model of order $n$ to be reduced to an order $r=n/s$ where $n,r,s in field...

An additive matrix preconditioning method with application for domain decomposition and two-level matrix partitionings

Czech Academy of Sciences Publication Activity Database

Axelsson, Owe

2010-01-01

Roč. 5910, - (2010), s. 76-83 ISSN 0302-9743. [International Conference on Large-Scale Scientific Computations, LSSC 2009 /7./. Sozopol, 04.06.2009-08.06.2009] R&D Projects: GA AV ČR 1ET400300415 Institutional research plan: CEZ:AV0Z30860518 Keywords : additive matrix * condition number * domain decomposition Subject RIV: BA - General Mathematics www.springerlink.com

Gamow-Jordan vectors and non-reducible density operators from higher-order S-matrix poles

International Nuclear Information System (INIS)

Bohm, A.; Loewe, M.; Maxson, S.; Patuleanu, P.; Puentmann, C.; Gadella, M.

1997-01-01

In analogy to Gamow vectors that are obtained from first-order resonance poles of the S-matrix, one can also define higher-order Gamow vectors which are derived from higher-order poles of the S-matrix. An S-matrix pole of r-th order at z R =E R -iΓ/2 leads to r generalized eigenvectors of order k=0,1,hor-ellipsis,r-1, which are also Jordan vectors of degree (k+1) with generalized eigenvalue (E R -iΓ/2). The Gamow-Jordan vectors are elements of a generalized complex eigenvector expansion, whose form suggests the definition of a state operator (density matrix) for the microphysical decaying state of this higher-order pole. This microphysical state is a mixture of non-reducible components. In spite of the fact that the k-th order Gamow-Jordan vectors has the polynomial time-dependence which one always associates with higher-order poles, the microphysical state obeys a purely exponential decay law. copyright 1997 American Institute of Physics

Study of electron-molecule collisions via the finite-element method and R-matrix propagation technique: Model exchange

International Nuclear Information System (INIS)

Abdolsalami, F.; Abdolsalami, M.; Gomez, P.

1994-01-01

We have applied the finite-element method to electron-molecule collisions. All the calculations are done in the body frame within the fixed-nuclei approximation. A model potential, which is added to the static and polarization potential, has been used to represent the exchange effect. The method is applied to electron-H 2 scattering and the eigenphase sums and the cross sections obtained are in very good agreement with the corresponding results from the linear-algebraic approach. Finite-element calculations of the R matrix in the region where the static and exchange interactions are strong, however, has about one-half to one-fourth of the memory requirement of the linear-algebraic technique

Determination of insoluble avian eggshell matrix proteins

Czech Academy of Sciences Publication Activity Database

Mikšík, Ivan; Sedláková, Pavla; Lacinová, Kateřina; Pataridis, Statis; Eckhardt, Adam

2010-01-01

Roč. 397, č. 1 (2010), s. 205-214 ISSN 1618-2642 R&D Projects: GA MŠk(CZ) 1M0510; GA ČR(CZ) GA203/09/0675; GA ČR(CZ) GA203/08/1428 Institutional research plan: CEZ:AV0Z50110509 Keywords : eggshell proteins * insoluble proteins * matrix proteins Subject RIV: CE - Biochemistry Impact factor: 3.841, year: 2010

Self-consistent T-matrix theory of superconductivity

Czech Academy of Sciences Publication Activity Database

Šopík, B.; Lipavský, Pavel; Männel, M.; Morawetz, K.; Matlock, P.

2011-01-01

Roč. 84, č. 9 (2011), 094529/1-094529/13 ISSN 1098-0121 R&D Projects: GA ČR GAP204/10/0212; GA ČR(CZ) GAP204/11/0015 Institutional research plan: CEZ:AV0Z10100521 Keywords : superconductivity * T-matrix * superconducting gap * restricted self-consistency Subject RIV: BM - Solid Matter Physics ; Magnetism Impact factor: 3.691, year: 2011

Retrieving the correlation matrix from a truncated PCA solution : The inverse principal component problem

NARCIS (Netherlands)

ten Berge, Jos M.F.; Kiers, Henk A.L.

When r Principal Components are available for k variables, the correlation matrix is approximated in the least squares sense by the loading matrix times its transpose. The approximation is generally not perfect unless r = k. In the present paper it is shown that, when r is at or above the Ledermann

Random matrix analysis of human EEG data

Czech Academy of Sciences Publication Activity Database

Šeba, Petr

2003-01-01

Roč. 91, - (2003), s. 198104-1 - 198104-4 ISSN 0031-9007 R&D Projects: GA ČR GA202/02/0088 Institutional research plan: CEZ:AV0Z1010914 Keywords : random matrix theory * EEG signal Subject RIV: BE - Theoretical Physics Impact factor: 7.035, year: 2003

Spin Calogero Particles and Bispectral Solutions of the Matrix KP Hierarchy

International Nuclear Information System (INIS)

Bergvelt, Maarten; Gekhtman, Michael; Kasman, Alex

2009-01-01

Pairs of nxn matrices whose commutator differ from the identity by a matrix of rank r are used to construct bispectral differential operators with rxr matrix coefficients satisfying the Lax equations of the Matrix KP hierarchy. Moreover, the bispectral involution on these operators has dynamical significance for the spin Calogero particles system whose phase space such pairs represent. In the case r = 1, this reproduces well-known results of Wilson and others from the 1990's relating (spinless) Calogero-Moser systems to the bispectrality of (scalar) differential operators

Matrix Metalloproteinases in Myasthenia Gravis

NARCIS (Netherlands)

Helgeland, G.; Petzold, A.F.S.; Luckman, S.P.; Gilhus, N.E.; Plant, G.T.; Romi, F.R.

2011-01-01

Introduction: Myasthenia gravis (MG) is an autoimmune disease with weakness in striated musculature due to anti-acetylcholine receptor (AChR) antibodies or muscle specific kinase at the neuromuscular junction. A subgroup of patients has periocular symptoms only; ocular MG (OMG). Matrix

Effectiveness of Matrix Organizations at the TACOM LCMC

Science.gov (United States)

2013-04-05

those in the TARDEC 91% 9% Matrix Employee who think Supvr can Resolve issues at their level Yes No UNCLASSIFIED Effectiveness of Matrix...Journal, 51-54. Randolph, W. A., & Blackburn , R. S. (1989). Managing organizational behavior. Homewood: Irwin. Randolph, W. A., & Dess, G. G. (1984...engine performance. PERSONAL:  Golf, Skiing, Fatherhood (two boys Jordan and Simon ), Spouse Anne

Molecular events in matrix protein metabolism in the aging kidney

Science.gov (United States)

Sataranatarajan, Kavithalakshmi; Feliers, Denis; Mariappan, Meenalakshmi M.; Lee, Hak Joo; Lee, Myung Ja; Day, Robert T.; Yalamanchili, Hima Bindu; Choudhury, Goutam G.; Barnes, Jeffrey L.; Van Remmen, Holly; Richardson, Arlan; Kasinath, Balakuntalam S.

2018-01-01

Summary We explored molecular events associated with aging-induced matrix changes in the kidney. C57BL6 mice were studied in youth, middle age, and old age. Albuminuria and serum cystatin C level (an index of glomerular filtration) increased with aging. Renal hypertrophy was evident in middle-aged and old mice and was associated with glomerulomegaly and increase in mesangial fraction occupied by extracellular matrix. Content of collagen types I and III and fibronectin was increased with aging; increment in their mRNA varied with the phase of aging. The content of ZEB1 and ZEB2, collagen type I transcription inhibitors, and their binding to the collagen type Iα2 promoter by ChIP assay also showed age-phase-specific changes. Lack of increase in mRNA and data from polysome assay suggested decreased degradation as a potential mechanism for kidney collagen type I accumulation in the middle-aged mice. These changes occurred with increment in TGFβ mRNA and protein and activation of its SMAD3 pathway; SMAD3 binding to the collagen type Iα2 promoter was also increased. TGFβ-regulated microRNAs (miRs) exhibited selective regulation. The renal cortical content of miR-21 and miR-200c, but not miR-192, miR-200a, or miR-200b, was increased with aging. Increased miR-21 and miR-200c contents were associated with reduced expression of their targets, Sprouty-1 and ZEB2, respectively. These data show that aging is associated with complex molecular events in the kidney that are already evident in the middle age and progress to old age. Agephase-specific regulation of matrix protein synthesis occurs and involves matrix protein-specific transcriptional and post-transcriptional mechanisms. PMID:23020145

On the equilibrium state of a small system with random matrix coupling to its environment

Science.gov (United States)

Lebowitz, J. L.; Pastur, L.

2015-07-01

We consider a random matrix model of interaction between a small n-level system, S, and its environment, a N-level heat reservoir, R. The interaction between S and R is modeled by a tensor product of a fixed n× n matrix and a N× N Hermitian random matrix. We show that under certain ‘macroscopicity’ conditions on R, the reduced density matrix of the system {{ρ }S}=T{{r}R}ρ S\\cup R(eq), is given by ρ S(c)˜ exp \\{-β {{H}S}\\}, where HS is the Hamiltonian of the isolated system. This holds for all strengths of the interaction and thus gives some justification for using ρ S(c) to describe some nano-systems, like biopolymers, in equilibrium with their environment (Seifert 2012 Rep. Prog. Phys. 75 126001). Our results extend those obtained previously in (Lebowitz and Pastur 2004 J. Phys. A: Math. Gen. 37 1517-34) (Lebowitz et al 2007 Contemporary Mathematics (Providence RI: American Mathematical Society) pp 199-218) for a special two-level system.

Matrix Elements in Fermion Dynamical Symmetry Model

Institute of Scientific and Technical Information of China (English)

LIU Guang-Zhou; LIU Wei

2002-01-01

In a neutron-proton system, the matrix elements of the generators for SO(8) × SO(8) symmetry areconstructed explicitly, and with these matrix elements the low-lying excitation spectra obtained by diagonalization arepresented. The excitation spectra for SO(7) nuclei Pd and Ru isotopes and SO(6) r-soft rotational nuclei Xe, Ba, andCe isotopes are calculated, and comparison with the experimental results is carried out.

Matrix Elements in Fermion Dynamical Symmetry Model

Institute of Scientific and Technical Information of China (English)

LIUGuang－Zhou; LIUWei

2002-01-01

In a neutron-proton system,the matrix elements of the generators for SO(8)×SO(8) symmetry are constructed exp;icitly,and with these matrix elements the low-lying excitation spsectra obtained by diagonalization are presented.The excitation spectra for SO(7) nuclei Pd and Ru isotopes and SO(6) r-soft rotational nuclei Xe,Ba,and Ce isotopes are calculated,and comparison with the experimental results is carried out.

Integrable Floquet dynamics, generalized exclusion processes and "fused" matrix ansatz

Science.gov (United States)

Vanicat, Matthieu

2018-04-01

We present a general method for constructing integrable stochastic processes, with two-step discrete time Floquet dynamics, from the transfer matrix formalism. The models can be interpreted as a discrete time parallel update. The method can be applied for both periodic and open boundary conditions. We also show how the stationary distribution can be built as a matrix product state. As an illustration we construct parallel discrete time dynamics associated with the R-matrix of the SSEP and of the ASEP, and provide the associated stationary distributions in a matrix product form. We use this general framework to introduce new integrable generalized exclusion processes, where a fixed number of particles is allowed on each lattice site in opposition to the (single particle) exclusion process models. They are constructed using the fusion procedure of R-matrices (and K-matrices for open boundary conditions) for the SSEP and ASEP. We develop a new method, that we named "fused" matrix ansatz, to build explicitly the stationary distribution in a matrix product form. We use this algebraic structure to compute physical observables such as the correlation functions and the mean particle current.

Convergent j-matrix calculation of electron-helium resonances

International Nuclear Information System (INIS)

Konovalov, D.A.; McCarthy, I.E.

1994-12-01

Resonance structures in n=2 and n=3 electron-helium excitation cross sections are calculated using the J-matrix method. The number of close-coupled helium bound and continuum states is taken to convergence, e.g. about 100 channels are coupled for each total spin and angular momentum. It is found that the present J-matrix results are in good shape agreement with recent 29-state R-matrix calculations. However the J-matrix absolute cross sections are slightly lower due to the influence of continuum channels included in the present method. Experiment and theory agree on the positions of n=2 and n=3 resonances. 22 refs., 1 tab.; 3 figs

An interpolation problem for completely positive maps on matrix algebras: solvability and parametrization

Czech Academy of Sciences Publication Activity Database

Ambrozie, Calin-Grigore; Gheondea, A.

2015-01-01

Roč. 63, č. 4 (2015), s. 826-851 ISSN 0308-1087 R&D Projects: GA AV ČR IAA100190903 Institutional support: RVO:67985840 Keywords : Choi matrix * completely positive * density matrix Subject RIV: BA - General Mathematics Impact factor: 0.761, year: 2015 http://www.tandfonline.com/doi/abs/10.1080/03081087.2014.903253

Successive Over Relaxation Method Which Uses Matrix Norms for ...

African Journals Online (AJOL)

An algorithm for S.O.R functional iteration which uses matrix norms for the Jacobi iteration matrices rather than the usual Power method, feasible in Newton Operator for the solution of nonlinear system of equations is proposed. We modified the S.O.R. iterative method known as Multiphase S.O.R. method for Newton ...

TVEDIM, 2-D Homogeneous and Inhomogeneous Neutron Diffusion for X-Y, R-Z, R-Theta Geometry

International Nuclear Information System (INIS)

Kristiansen, G.K.

1987-01-01

1 - Nature of physical problem solved: The two-dimensional neutron diffusion equation (x-y, r-z, or r-theta geometry is solved, either in the inhomogeneous (source calculation) or the homogeneous form (K eff calculation or absorber adjustment). The boundary conditions specify each group current as a linear homogeneous function of the group fluxes (gamma matrix concept). For each material, the fission matrix is assumed to by dyadic. 2 - Method of solution: Finite difference formulation (5 point scheme, mesh corner variant) is used. Solution technique: multi-line SOR. Eigenvalue estimate by neutron balance

A reduced-scaling density matrix-based method for the computation of the vibrational Hessian matrix at the self-consistent field level

International Nuclear Information System (INIS)

Kussmann, Jörg; Luenser, Arne; Beer, Matthias; Ochsenfeld, Christian

2015-01-01

An analytical method to calculate the molecular vibrational Hessian matrix at the self-consistent field level is presented. By analysis of the multipole expansions of the relevant derivatives of Coulomb-type two-electron integral contractions, we show that the effect of the perturbation on the electronic structure due to the displacement of nuclei decays at least as r −2 instead of r −1 . The perturbation is asymptotically local, and the computation of the Hessian matrix can, in principle, be performed with O(N) complexity. Our implementation exhibits linear scaling in all time-determining steps, with some rapid but quadratic-complexity steps remaining. Sample calculations illustrate linear or near-linear scaling in the construction of the complete nuclear Hessian matrix for sparse systems. For more demanding systems, scaling is still considerably sub-quadratic to quadratic, depending on the density of the underlying electronic structure

Fracture behaviour of brittle (glass) matrix composites

Czech Academy of Sciences Publication Activity Database

Dlouhý, Ivo; Chlup, Zdeněk; Boccaccini, A. R.

2005-01-01

Roč. 482, - (2005), s. 115-122 ISSN 0255-5476. [International Conference on Materials Structure and Micromechanics of Fracture /4./. Brno, 23.06.2004-25.06.2004] R&D Projects: GA AV ČR(CZ) IAA2041003; GA ČR(CZ) GA101/02/0683 Institutional research plan: CEZ:AV0Z2041904 Keywords : Ceramic matrix composites * fracture toughness * toughening effects Subject RIV: JH - Ceramic s, Fire-Resistant Materials and Glass Impact factor: 0.399, year: 2005

Muscle contractures in patients with cerebral palsy and acquired brain injury are associated with extracellular matrix expansion, pro-inflammatory gene expression, and reduced rRNA synthesis.

Science.gov (United States)

von Walden, Ferdinand; Gantelius, Stefan; Liu, Chang; Borgström, Hanna; Björk, Lars; Gremark, Ola; Stål, Per; Nader, Gustavo A; Pontén, Eva

2018-03-23

Children with cerebral palsy (CP) and acquired brain injury (ABI) commonly develop muscle contractures with advancing age. An underlying growth defect contributing to skeletal muscle contracture formation in CP/ABI has been suggested. The biceps muscles of children and adolescents with CP/ABI (n=20) and typically developing controls (n=10) were investigated. We used immunohistochemistry, qRT-PCR and western blotting to assess gene expression relevant to growth and size homeostasis. Classical pro-inflammatory cytokines and genes involved in extracellular matrix production were elevated in skeletal muscle of children with CP/ABI. Intramuscular collagen content was increased and satellite cell number decreased and this was associated with reduced levels of RNA polymerase (POL) I transcription factors, 45s pre-rRNA and 28S rRNA. The present study provides novel data suggesting a role for pro-inflammatory cytokines and reduced ribosomal production in the development/maintenance of muscle contractures; possibly underlying stunted growth and perimysial extracellular matrix expansion. This article is protected by copyright. All rights reserved. © 2018 Wiley Periodicals, Inc.

A collagen-based scaffold delivering exogenous microrna-29B to modulate extracellular matrix remodeling.

Science.gov (United States)

Monaghan, Michael; Browne, Shane; Schenke-Layland, Katja; Pandit, Abhay

2014-04-01

Directing appropriate extracellular matrix remodeling is a key aim of regenerative medicine strategies. Thus, antifibrotic interfering RNA (RNAi) therapy with exogenous microRNA (miR)-29B was proposed as a method to modulate extracellular matrix remodeling following cutaneous injury. It was hypothesized that delivery of miR-29B from a collagen scaffold will efficiently modulate the extracellular matrix remodeling response and reduce maladaptive remodeling such as aggressive deposition of collagen type I after injury. The release of RNA from the scaffold was assessed and its ability to silence collagen type I and collagen type III expression was evaluated in vitro. When primary fibroblasts were cultured with scaffolds doped with miR-29B, reduced levels of collagen type I and collagen type III mRNA expression were observed for up to 2 weeks of culture. When the scaffolds were applied to full thickness wounds in vivo, reduced wound contraction, improved collagen type III/I ratios and a significantly higher matrix metalloproteinase (MMP)-8: tissue inhibitor of metalloproteinase (TIMP)-1 ratio were detected when the scaffolds were functionalized with miR-29B. Furthermore, these effects were significantly influenced by the dose of miR-29B in the collagen scaffold (0.5 versus 5 μg). This study shows a potential of combining exogenous miRs with collagen scaffolds to improve extracellular matrix remodeling following injury.

Fracture behaviour of mullite fibre reinforced-mullite matrix composites under quasi-static and ballistic impact loading

Czech Academy of Sciences Publication Activity Database

Boccaccini, A. R.; Atiq, S.; Boccaccini, D. N.; Dlouhý, Ivo; Kaya, C.

č. 65 (2005), s. 325-333 ISSN 0266-3538 R&D Projects: GA AV ČR IAA2041003 Keywords : ceramic matrix composites * mullite matrix * toughness Subject RIV: JL - Materials Fatigue, Friction Mechanics Impact factor: 2.184, year: 2005

On bounded rank positive semidefinite matrix completions of extreme partial correlation matrices.

NARCIS (Netherlands)

M. Eisenberg-Nagy (Marianna); M. Laurent (Monique); A. Varvitsiotis (Antonios)

2012-01-01

textabstractWe study a new geometric graph parameter $egd(G)$, defined as the smallest integer $r\\ge 1$ for which any partial symmetric matrix which is completable to a correlation matrix and whose entries are specified at the positions of the edges of $G$, can be completed to a matrix in the convex

A Collagen-based Scaffold Delivering Exogenous MicroRNA-29B to Modulate Extracellular Matrix Remodeling

OpenAIRE

Monaghan, Michael; Browne, Shane; Schenke-Layland, Katja; Pandit, Abhay

2014-01-01

Directing appropriate extracellular matrix remodeling is a key aim of regenerative medicine strategies. Thus, antifibrotic interfering RNA (RNAi) therapy with exogenous microRNA (miR)-29B was proposed as a method to modulate extracellular matrix remodeling following cutaneous injury. It was hypothesized that delivery of miR-29B from a collagen scaffold will efficiently modulate the extracellular matrix remodeling response and reduce maladaptive remodeling such as aggressive deposition of coll...

A two-loop test of M(atrix) theory

International Nuclear Information System (INIS)

Becker, K.

1997-01-01

We consider the scattering of two Dirichlet zero-branes in M(atrix) theory. Using the formulation of M(atrix) theory in terms of ten-dimensional super Yang-Mills theory dimensionally reduced to (0+1) dimensions, we obtain the effective (velocity-dependent) potential describing these particles. At one loop we obtain the well-known result for the leading order of the effective potential V eff ∝v 4 /r 7 , where v and r are the relative velocity and distance between the two zero-branes, respectively. A calculation of the effective potential at two loops shows that no renormalizations of the v 4 term of the effective potential occur at this order. (orig.)

On bounded rank positive semidefinite matrix completions of extreme partial correlation matrices.

NARCIS (Netherlands)

M. Eisenberg-Nagy (Marianna); M. Laurent (Monique); A. Varvitsiotis (Antonios)

2012-01-01

htmlabstractWe study a new geometric graph parameter egd(G), defined as the smallest integer r ≥ 1 for which any partial symmetric matrix which is completable to a correlation matrix and whose entries are specified at the positions of the edges of G, can be completed to a matrix in the convex hull

Efficiency criterion for teleportation via channel matrix, measurement matrix and collapsed matrix

Directory of Open Access Journals (Sweden)

Xin-Wei Zha

Full Text Available In this paper, three kinds of coefficient matrixes (channel matrix, measurement matrix, collapsed matrix associated with the pure state for teleportation are presented, the general relation among channel matrix, measurement matrix and collapsed matrix is obtained. In addition, a criterion for judging whether a state can be teleported successfully is given, depending on the relation between the number of parameter of an unknown state and the rank of the collapsed matrix. Keywords: Channel matrix, Measurement matrix, Collapsed matrix, Teleportation

A 9 x 9 Matrix Representation of Birman-Wenzl-Murakami Algebra and Berry Phase in Yang-Baxter System

International Nuclear Information System (INIS)

Gou Lidan; Xue Kang; Wang Gangcheng

2011-01-01

We present a 9 x 9 S-matrix and E-matrix. A representation of specialized Birman-Wenzl-Murakami algebra is obtained. Starting from the given braid group representation S-matrix, we obtain the trigonometric solution of Yang-Baxter equation. A unitary matrix R(x, φ 1 ,φ 2 ) is generated via the Yang-Baxterization approach. Then we construct a Yang-Baxter Hamiltonian through the unitary matrix R(x, φ 1 ,φ 2 ). Berry phase of this Yang-Baxter system is investigated in detail. (general)

Distance matrix-based approach to protein structure prediction.

Science.gov (United States)

Kloczkowski, Andrzej; Jernigan, Robert L; Wu, Zhijun; Song, Guang; Yang, Lei; Kolinski, Andrzej; Pokarowski, Piotr

2009-03-01

Much structural information is encoded in the internal distances; a distance matrix-based approach can be used to predict protein structure and dynamics, and for structural refinement. Our approach is based on the square distance matrix D = [r(ij)(2)] containing all square distances between residues in proteins. This distance matrix contains more information than the contact matrix C, that has elements of either 0 or 1 depending on whether the distance r (ij) is greater or less than a cutoff value r (cutoff). We have performed spectral decomposition of the distance matrices D = sigma lambda(k)V(k)V(kT), in terms of eigenvalues lambda kappa and the corresponding eigenvectors v kappa and found that it contains at most five nonzero terms. A dominant eigenvector is proportional to r (2)--the square distance of points from the center of mass, with the next three being the principal components of the system of points. By predicting r (2) from the sequence we can approximate a distance matrix of a protein with an expected RMSD value of about 7.3 A, and by combining it with the prediction of the first principal component we can improve this approximation to 4.0 A. We can also explain the role of hydrophobic interactions for the protein structure, because r is highly correlated with the hydrophobic profile of the sequence. Moreover, r is highly correlated with several sequence profiles which are useful in protein structure prediction, such as contact number, the residue-wise contact order (RWCO) or mean square fluctuations (i.e. crystallographic temperature factors). We have also shown that the next three components are related to spatial directionality of the secondary structure elements, and they may be also predicted from the sequence, improving overall structure prediction. We have also shown that the large number of available HIV-1 protease structures provides a remarkable sampling of conformations, which can be viewed as direct structural information about the

45 CFR Appendix A to Subpart C of... - Security Standards: Matrix

Science.gov (United States)

2010-10-01

... 45 Public Welfare 1 2010-10-01 2010-10-01 false Security Standards: Matrix A Appendix A to Subpart C of Part 164 Public Welfare DEPARTMENT OF HEALTH AND HUMAN SERVICES ADMINISTRATIVE DATA STANDARDS... Standards: Matrix Standards Sections Implementation Specifications (R)=Required, (A)=Addressable...

Fracture Resistance Evaluation of Fibre Reinforced Brittle Matrix Composites

Czech Academy of Sciences Publication Activity Database

Dlouhý, Ivo; Chlup, Zdeněk

2005-01-01

Roč. 290, - (2005), s. 167-174 ISSN 1013-9826. [Fractography of Advanced Ceramic s /2./. Stará Lesná, 03.10.2004-06.10.2004] R&D Projects: GA AV ČR(CZ) IAA2041003; GA ČR(CZ) GA101/02/0683 Keywords : fibre-reinforced ceramic s * glass matrix composites * chevron notch Subject RIV: JL - Materials Fatigue, Friction Mechanics Impact factor: 0.224, year: 2005

The linear parameters and the decoupling matrix for linearly coupled motion in 6 dimensional phase space

International Nuclear Information System (INIS)

Parzen, G.

1997-01-01

It will be shown that starting from a coordinate system where the 6 phase space coordinates are linearly coupled, one can go to a new coordinate system, where the motion is uncoupled, by means of a linear transformation. The original coupled coordinates and the new uncoupled coordinates are related by a 6 x 6 matrix, R. It will be shown that of the 36 elements of the 6 x 6 decoupling matrix R, only 12 elements are independent. A set of equations is given from which the 12 elements of R can be computed form the one period transfer matrix. This set of equations also allows the linear parameters, the β i , α i , i = 1, 3, for the uncoupled coordinates, to be computed from the one period transfer matrix

Contribution of 194.1 keV Resonance to 17O(p, alpha) 14N Reaction Rate using R Matrix Code

International Nuclear Information System (INIS)

Chafa, A.; Messili, F.Z.; Barhoumi, S.

2009-01-01

Knowledge of the 17 O(p, alpha ) 14 N reaction rates is required for evaluating elemental abundances in a number of hydrogen - burning stellar sites. This reaction is specifically very important for nucleosynthesis of the rare oxygen isotope 17 O. Classical novae are thought to be a major source of 17 O in the Galaxy and produce the short-live radioisotope 18 F whose + decay is followed by a gamma ray emission which could be observed with satellites such as the Integral observatory. As the 17 O(p, alpha) 14 N and 17 O(p, alpha ) 18 F reactions govern the destruction of 17 O and the formation of 1 '8F, their rates are decisive in determining the final abundances of these isotopes. Stellar temperatures of primary importance for nucleosynthesis are typically in the ranges T = 0.01-0.1 GK for red giant, AGB, and massive stars, and T 0.01-0.4 GK for classical nova explosions In recent work, we observed, for the first time, a resonance a 183.3 keV corresponding to level in 18 F at Ex 5789.8 ± 0.3 keV. A new astrophysical parameters of this resonance are found. In this work we study this reaction using numerical code based on R matrix method including the new values of level energy and parameters of 183.3 keV resonance in order to show his contribution to 17 O(p, alpha) 14 N reaction rates. We also use old parameters values of this resonance given in Keiser work for comparison. We show that this resonance predominate the reaction rates in all range of stellar temperature for classical nova explosions. This is in good agreement with our work with experimental method. We also study cross section and differential cross section 17 O(p, alpha ) 14 N reaction with R matrix method

Effects of β-irradiation in multicomponent glasses simulating the matrix of the French nuclear waste glass (R7T7)

International Nuclear Information System (INIS)

Boizot, B.; Ghaleb, D.; Petite, G.

2001-01-01

4-, 5- and 6-oxide components alumino-borosilicate glasses, with compositions closed to the matrix of the french nuclear glass 'R7T7' have been irradiated with electrons (β) at 2.5 MeV with a Van de Graff accelerator. These glasses have been studied after irradiation with different spectroscopic methods: Electron Paramagnetic Resonance for the study of defects, Raman Micro-spectroscopy for the study of amorphous network evolution under irradiation, and by 11 B MAS NMR. The results of these studies are presented here. It shows in particular a great sensibility to the irradiation conditions like dose rate and irradiation temperature, who are therefore important parameters for the representativeness of such experiments. (authors)

An Ar threesome: Matrix models, 2d conformal field theories, and 4dN=2 gauge theories

International Nuclear Information System (INIS)

Schiappa, Ricardo; Wyllard, Niclas

2010-01-01

We explore the connections between three classes of theories: A r quiver matrix models, d=2 conformal A r Toda field theories, and d=4N=2 supersymmetric conformal A r quiver gauge theories. In particular, we analyze the quiver matrix models recently introduced by Dijkgraaf and Vafa (unpublished) and make detailed comparisons with the corresponding quantities in the Toda field theories and the N=2 quiver gauge theories. We also make a speculative proposal for how the matrix models should be modified in order for them to reproduce the instanton partition functions in quiver gauge theories in five dimensions.

Cloning and characterization of pre-miR159a and pre-miR1123 from ...

African Journals Online (AJOL)

Although many miRNA genes are conserved across the plant species, the same gene family varies significantly in size and genomic organization in different species. ... Sequence identity matrix suggests 43-82% variation in precursor of Tae AL pre-miR159a (Tae Agra local pre-miR159a) across the species. On the other ...

Dirac R -matrix calculations for the electron-impact excitation of neutral tungsten providing noninvasive diagnostics for magnetic confinement fusion

Science.gov (United States)

Smyth, R. T.; Ballance, C. P.; Ramsbottom, C. A.; Johnson, C. A.; Ennis, D. A.; Loch, S. D.

2018-05-01

Neutral tungsten is the primary candidate as a wall material in the divertor region of the International Thermonuclear Experimental Reactor (ITER). The efficient operation of ITER depends heavily on precise atomic physics calculations for the determination of reliable erosion diagnostics, helping to characterize the influx of tungsten impurities into the core plasma. The following paper presents detailed calculations of the atomic structure of neutral tungsten using the multiconfigurational Dirac-Fock method, drawing comparisons with experimental measurements where available, and includes a critical assessment of existing atomic structure data. We investigate the electron-impact excitation of neutral tungsten using the Dirac R -matrix method, and by employing collisional-radiative models, we benchmark our results with recent Compact Toroidal Hybrid measurements. The resulting comparisons highlight alternative diagnostic lines to the widely used 400.88-nm line.

SparseM: A Sparse Matrix Package for R *

Directory of Open Access Journals (Sweden)

Roger Koenker

2003-02-01

Full Text Available SparseM provides some basic R functionality for linear algebra with sparse matrices. Use of the package is illustrated by a family of linear model fitting functions that implement least squares methods for problems with sparse design matrices. Significant performance improvements in memory utilization and computational speed are possible for applications involving large sparse matrices.

On functional determinants of matrix differential operators with multiple zero modes

NARCIS (Netherlands)

Falco, G.M.; Fedorenko, Andrey A; Gruzberg, Ilya A

2017-01-01

We generalize the method of computing functional determinants with a single excluded zero eigenvalue developed by McKane and Tarlie to differential operators with multiple zero eigenvalues. We derive general formulas for such functional determinants of $r\\times r$ matrix second order differential

Random matrix theories and chaotic dynamics

International Nuclear Information System (INIS)

Bohigas, O.

1991-01-01

A review of some of the main ideas, assumptions and results of the Wigner-Dyson type random matrix theories (RMT) which are relevant in the general context of 'Chaos and Quantum Physics' is presented. RMT are providing interesting and unexpected clues to connect classical dynamics with quantum phenomena. It is this aspect which will be emphasised and, concerning the main body of RMT, the author will restrict himself to a minimum. However, emphasis will be put on some generalizations of the 'canonical' random matrix ensembles that increase their flexibility, rendering the incorporation of relevant physical constraints possible. (R.P.) 112 refs., 35 figs., 5 tabs

SAMMY, Multilevel R-Matrix Fits to Neutron and Charged-Particle Cross-Section Data Using Bayes' Equations

International Nuclear Information System (INIS)

Larson, Nancy M.

2007-01-01

1 - Description of problem or function: The purpose of the code is to analyze time-of-flight cross section data in the resolved and unresolved resonance regions, where the incident particle is either a neutron or a charged particle (p, alpha, d,...). Energy-differential cross sections and angular-distribution data are treated, as are certain forms of energy-integrated data. In the resolved resonance region (RRR), theoretical cross sections are generated using the Reich-Moore approximation to R-matrix theory (and extensions thereof). Sophisticated models are used to describe the experimental situation: Data-reduction parameters (e.g. normalization, background, sample thickness) are included. Several options are available for both resolution and Doppler broadening, including a crystal-lattice model for Doppler broadening. Self-shielding and multiple-scattering correction options are available for analysis of capture cross sections. Multiple isotopes and impurities within a sample are handled accurately. Cross sections in the unresolved resonance region (URR) can also be analyzed using SAMMY. The capability was borrowed from Froehner's FITACS code; SAMMY modifications for the URR include more exact calculation of partial derivatives, normalization options for the experimental data, increased flexibility for input of experimental data, introduction of user-friendly input options. In both energy regions, values for resonance parameters and for data-related parameters (such as normalization, sample thickness, effective temperature, resolution parameters) are determined via fits to the experimental data using Bayes' method (see below). Final results may be reported in ENDF format for inclusion in the evaluated nuclear data files. The manner in which SAMMY 7 (released in 2006) differs from the previous version (SAMMY-M6) is itemized in Section I.A of the SAMMY users' manual. Details of the 7.0.1 update are documented in an errata SAMMY 7.0.1 Errata (http

Strategy BMT Al-Ittihad Using Matrix IE, Matrix SWOT 8K, Matrix SPACE and Matrix TWOS

Directory of Open Access Journals (Sweden)

Nofrizal Nofrizal

2018-03-01

Full Text Available This research aims to formulate and select BMT Al-Ittihad Rumbai strategy to face the changing of business environment both from internal environment such as organization resources, finance, member and external business such as competitor, economy, politics and others. This research method used Analysis of EFAS, IFAS, IE Matrix, SWOT-8K Matrix, SPACE Matrix and TWOS Matrix. our hope from this research it can assist BMT Al-Ittihad in formulating and selecting strategies for the sustainability of BMT Al-Ittihad in the future. The sample in this research is using purposive sampling technique that is the manager and leader of BMT Al-IttihadRumbaiPekanbaru. The result of this research shows that the position of BMT Al-Ittihad using IE Matrix, SWOT-8K Matrix and SPACE Matrix is in growth position, stabilization and aggressive. The choice of strategy after using TWOS Matrix is market penetration, market development, vertical integration, horizontal integration, and stabilization (careful.

A major protein component of the Bacillus subtilis biofilm matrix.

Science.gov (United States)

Branda, Steven S; Chu, Frances; Kearns, Daniel B; Losick, Richard; Kolter, Roberto

2006-02-01

Microbes construct structurally complex multicellular communities (biofilms) through production of an extracellular matrix. Here we present evidence from scanning electron microscopy showing that a wild strain of the Gram positive bacterium Bacillus subtilis builds such a matrix. Genetic, biochemical and cytological evidence indicates that the matrix is composed predominantly of a protein component, TasA, and an exopolysaccharide component. The absence of TasA or the exopolysaccharide resulted in a residual matrix, while the absence of both components led to complete failure to form complex multicellular communities. Extracellular complementation experiments revealed that a functional matrix can be assembled even when TasA and the exopolysaccharide are produced by different cells, reinforcing the view that the components contribute to matrix formation in an extracellular manner. Having defined the major components of the biofilm matrix and the control of their synthesis by the global regulator SinR, we present a working model for how B. subtilis switches between nomadic and sedentary lifestyles.

Matrix Optical Absorption in UV-MALDI MS.

Science.gov (United States)

Robinson, Kenneth N; Steven, Rory T; Bunch, Josephine

2018-03-01

In ultraviolet matrix-assisted laser desorption/ionization mass spectrometry (UV-MALDI MS) matrix compound optical absorption governs the uptake of laser energy, which in turn has a strong influence on experimental results. Despite this, quantitative absorption measurements are lacking for most matrix compounds. Furthermore, despite the use of UV-MALDI MS to detect a vast range of compounds, investigations into the effects of laser energy have been primarily restricted to single classes of analytes. We report the absolute solid state absorption spectra of the matrix compounds α-cyano-4-hydroxycinnamic acid (CHCA), para-nitroaniline (PNA), 2-mercaptobenzothiazole (MBT), 2,5-dihydroxybenzoic acid (2,5-DHB), and 2,4,6-trihydroxyacetophenone (THAP). The desorption/ionization characteristics of these matrix compounds with respect to laser fluence was investigated using mixed systems of matrix with either angiotensin II, PC(34:1) lipid standard, or haloperidol, acting as representatives for typical classes of analyte encountered in UV-MALDI MS. The first absolute solid phase spectra for PNA, MBT, and THAP are reported; additionally, inconsistencies between previously published spectra for CHCA are resolved. In light of these findings, suggestions are made for experimental optimization with regards to matrix and laser wavelength selection. The relationship between matrix optical cross-section and wavelength-dependant threshold fluence, fluence of maximum ion yield, and R, a new descriptor for the change in ion intensity with fluence, are described. A matrix cross-section of 1.3 × 10 -17 cm -2 was identified as a potential minimum for desorption/ionization of analytes. Graphical Abstract ᅟ.

One-step separation of myristoylated and nonmyristoylated retroviral matrix proteins

Czech Academy of Sciences Publication Activity Database

Doležal, Michal; Zábranský, Aleš; Hrabal, R.; Ruml, T.; Pichová, Iva; Rumlová, Michaela

2013-01-01

Roč. 92, č. 1 (2013), s. 94-99 ISSN 1046-5928 R&D Projects: GA ČR GA204/09/1388 Institutional support: RVO:61388963 Keywords : matrix protein * mouse mammary tumor virus * murine leukemia virus * myristoylation * N-myristoyltransferase * retrovirus Subject RIV: CE - Biochemistry Impact factor: 1.508, year: 2013

Collisional excitation of neon-like Ni XIX using the Breit–Pauli R ...

Indian Academy of Sciences (India)

Abstract. Collision strength for the transition within the first five fine-structure levels in Ni XIX are calculated using the Breit–Pauli R-matrix method. Configuration inter- action wave functions are used to represent the target states included in the R-matrix expansion. The relativistic effects are incorporated in the Breit–Pauli ...

Reduced density matrix functional theory via a wave function based approach

Energy Technology Data Exchange (ETDEWEB)

Schade, Robert; Bloechl, Peter [Institute for Theoretical Physics, Clausthal University of Technology, Clausthal (Germany); Pruschke, Thomas [Institute for Theoretical Physics, University of Goettingen, Goettingen (Germany)

2016-07-01

We propose a new method for the calculation of the electronic and atomic structure of correlated electron systems based on reduced density matrix functional theory (rDMFT). The density-matrix functional is evaluated on the fly using Levy's constrained search formalism. The present implementation rests on a local approximation of the interaction reminiscent to that of dynamical mean field theory (DMFT). We focus here on additional approximations to the exact density-matrix functional in the local approximation and evaluate their performance.

On The Determinant of q-Distance Matrix of a Graph

Directory of Open Access Journals (Sweden)

Li Hong-Hai

2014-02-01

Full Text Available In this note, we show how the determinant of the q-distance matrix Dq(T of a weighted directed graph G can be expressed in terms of the corresponding determinants for the blocks of G, and thus generalize the results obtained by Graham et al. [R.L. Graham, A.J. Hoffman and H. Hosoya, On the distance matrix of a directed graph, J. Graph Theory 1 (1977 85-88]. Further, by means of the result, we determine the determinant of the q-distance matrix of the graph obtained from a connected weighted graph G by adding the weighted branches to G, and so generalize in part the results obtained by Bapat et al. [R.B. Bapat, S. Kirkland and M. Neumann, On distance matrices and Laplacians, Linear Algebra Appl. 401 (2005 193- 209]. In particular, as a consequence, determinantal formulae of q-distance matrices for unicyclic graphs and one class of bicyclic graphs are presented.

Evaluation of the implementation of the R-matrix formalism with reference to the astrophysically important {sup 18}F(p,α){sup 15}O reaction

Energy Technology Data Exchange (ETDEWEB)

Mountford, D.J., E-mail: d.j.mountford86@gmail.com [SUPA, School of Physics and Astronomy, University of Edinburgh, EH9 3JZ (United Kingdom); Boer, R.J. de [Department of Physics, University of Notre Dame, Notre Dame, Indiana 46556 (United States); Descouvemont, P. [Physique Nucléaire Théorique et Physique Mathématique, C.P. 229, Université Libre de Bruxelles (ULB), B 1050 Brussels (Belgium); Murphy, A. St. J. [SUPA, School of Physics and Astronomy, University of Edinburgh, EH9 3JZ (United Kingdom); Uberseder, E.; Wiescher, M. [Department of Physics, University of Notre Dame, Notre Dame, Indiana 46556 (United States)

2014-12-11

Background. The R-Matrix formalism is a crucial tool in the study of nuclear astrophysics reactions, and many codes have been written to implement the relevant mathematics. One such code makes use of Visual Basic macros. A further open-source code, AZURE, written in the FORTRAN programming language is available from the JINA collaboration and a C++ version, AZURE2, has recently become available. Purpose The detailed mathematics and extensive programming required to implement broadly applicable R-Matrix codes make comparisons between different codes highly desirable in order to check for errors. This paper presents a comparison of the three codes based around data and recent results of the astrophysically important {sup 18}F(p,α){sup 15}O reaction. Methods Using the same analysis techniques as in the work of Mountford et al. parameters are extracted from the two JINA codes, and the resulting cross-sections are compared. This includes both refitting data with each code and making low-energy extrapolations. Results All extracted parameters are shown to be broadly consistent between the three codes and the resulting calculations are in good agreement barring a known low-energy problem in the original AZURE code. Conclusion The three codes are shown to be broadly consistent with each other and equally valid in the study of astrophysical reactions, although one must be careful when considering low lying, narrow resonances which can be problematic when integrating.

HPLC-MS/MS method optimisation for matrix metalloproteinase 3 and matrix metalloproteinase 9 determination in human blood serum using target analysis.

Science.gov (United States)

Kotnik, Petra; Krajnc, Metka Koren; Pahor, Artur; Finšgar, Matjaž; Knez, Željko

2018-02-20

A quantitative analysis of zinc endopeptidases matrix metalloproteinase 9 (MMP9) and matrix metalloproteinase 3 (MMP3) from human blood serum are presented. Both matrix metalloproteinases (MMP) are present in human blood serum and can be used as biomarkers for different diseases. The analysis was performed using LC-MS/MS with a triple quadrupole mass spectrometer, based on two specific peptides of each MMP in comparison with an enzyme-linked immunosorbent assay (ELISA). While the conditions for the LC-MS/MS analysis of MMP9 peptides were previously reported for bronchoalveolar lavage fluid, the analysis of MMP3 peptides was newly quantified for human blood serum herein for the first time. For MMP3, the linear behaviour was determined in the concentration range from 1.0-200.0ng/mL (R 2 =0.997) with an LLOD of 0.5ng/mL. For MMP9, linearity was determined in the concentration range from 6.5-65.0ng/mL (R 2 =0.995) with an LLOD of 2.0ng/mL. Copyright © 2017 Elsevier B.V. All rights reserved.

Higher order spin-dependent terms in D0-brane scattering from the matrix model

International Nuclear Information System (INIS)

McArthur, I.N.

1998-01-01

The potential describing long-range interactions between D0-branes contains spin-dependent terms. In the matrix model, these should be reproduced by the one-loop effective action computed in the presence of a non-trivial fermionic background ψ. The v 3 ψ 2 /r 8 term in the effective action has been computed by Kraus and shown to correspond to a spin-orbit interaction between D0-branes, and the ψ 8 /r 11 term in the static potential has been obtained by Barrio et al. In this paper, the v 2 ψ 4 /r 9 term is computing in the matrix model and compared with the corresponding results of Morales et al. obtained using string theoretic methods. The technique employed is adapted to the underlying supersymmetry of the matrix model, and should be useful in the calculation of spin-dependent effects in more general Dp-brane scatterings. (orig.)

[Evaluation of the Peusner's coefficients matrix for polymeric membrane and ternary non-electrolyte solutions].

Science.gov (United States)

Jasik-Slęzak, Jolanta; Slęzak-Prochazka, Izabella; Slęzak, Andrzej

2014-01-01

A system of network forms of Kedem-Katchalsky (K-K) equations for ternary non-electrolyte solutions is made of eight matrix equations containing Peusner's coefficients R(ij), L(ij), H(ij), W(ij), K(ij), N(ij), S(ij) or P(ij) (i, j ∈ {1, 2, 3}). The equations are the result of symmetric or hybrid transformation of the classic form of K-K equations by the use of methods of Peusner's network thermodynamics (PNT). Calculating concentration dependences of the determinant of Peusner's coefficients matrixes R(ij), L(ij), H(ij), W(ij), S(ij), N(ij), K(ij) and P(ij) (i, j ∈ {1, 2, 3}). The material used in the experiment was a hemodialysis Nephrophan membrane with specified transport properties (L(p), σ, Ω) in aqueous glucose and ethanol solution. The method involved equations for determinants of the matrixes coefficients R(ij), L(ij), H(ij), W(ij), S(ij), N(ij), K(ij) or P(ij) (i, j ∈ {1, 2, 3}). The objective of calculations were dependences of determinants of Peusner's coeffcients matrixes R(ij), L(ij), H(ij), W(ij), S(ij), N(ij), K(ij) or P(ij) (i, j ∈ {1, 2, 3}) within the conditions of solution homogeneity upon an average concentration of one component of solution in the membrane (C1) with a determined value of the second component (C2). The method of calculating the determinants of Peusner's coeffcients matrixes R(ij), L(ij), H(ij), W(ij), S(ij), N(ij), K(ij) or P(ij) (i, j ∈ {1, 2, 3}) is a new tool that may be applicable in studies on membrane transport. Calculations showed that the coefficients are sensitive to concentration and composition of solutions separated by a polymeric membrane.

Thrombospondin-2 promotes prostate cancer bone metastasis by the up-regulation of matrix metalloproteinase-2 through down-regulating miR-376c expression

Directory of Open Access Journals (Sweden)

Po-Chun Chen

2017-01-01

Full Text Available Abstract Background Thrombospondin-2 (TSP-2 is a secreted matricellular glycoprotein that is found to mediate cell-to-extracellular matrix attachment and participates in many physiological and pathological processes. The expression profile of TSP-2 on tumors is controversial, and it up-regulates in some cancers, whereas it down-regulates in others, suggesting that the functional role of TSP-2 on tumors is still uncertain. Methods The expression of TSP-2 on prostate cancer progression was determined in the tissue array by the immunohistochemistry. The molecular mechanism of TSP-2 on prostate cancer (PCa metastasis was investigated through pharmaceutical inhibitors, siRNAs, and miRNAs analyses. The role of TSP-2 on PCa metastasis in vivo was verified through xenograft in vivo imaging system. Results Based on the gene expression omnibus database and immunohistochemistry, we found that TSP-2 increased with the progression of PCa, especially in metastatic PCa and is correlated with the matrix metalloproteinase-2 (MMP-2 expression. Additionally, through binding to CD36 and integrin ανβ3, TSP-2 increased cell migration and MMP-2 expression. With inhibition of p38, ERK, and JNK, the TSP-2-induced cell migration and MMP-2 expression were abolished, indicating that the TSP-2’s effect on PCa is MAPK dependent. Moreover, the microRNA-376c (miR-376c was significantly decreased by the TSP-2 treatment. Furthermore, the TSP-2-induced MMP-2 expression and the subsequent cell motility were suppressed upon miR-376c mimic stimulation. On the other hand, the animal studies revealed that the bone metastasis was abolished when TSP-2 was stably knocked down in PCa cells. Conclusions Taken together, our results indicate that TSP-2 enhances the migration of PCa cells by increasing MMP-2 expression through down-regulation of miR-376c expression. Therefore, TSP-2 may represent a promising new target for treating PCa.

An Investigation of the Distribution of Power and Leader Effectiveness in Matrix Organizations

Science.gov (United States)

1989-09-01

Administrative Sciences, 5: 113-129 (No. 1 1974). Vasconcellos , Eduardo . "A Model for a Better Understanding of the Matrix Structure," IEEE Transactions on...Engineering Management, EM-26: 56-64 (August 1979). Vasconcellos , Eduardo and James Hemsley. "The Design of the Matrix Structure for R&D Organizations...research on project and matrix management (Leclaire, 1977; Melhart, 1976; Moyer, 1974; Peterson, 1986; Tesch, 1970; Tsukamoto, 1973; Vasconcellos , 1979

Bral1: "Superglue" for the extracellular matrix in the brain white matter.

Czech Academy of Sciences Publication Activity Database

Cicanič, Michal; Syková, Eva; Vargová, Lýdia

2012-01-01

Roč. 44, č. 4 (2012), s. 596-599 ISSN 1357-2725 R&D Projects: GA ČR GA309/09/1597; GA ČR(CZ) GAP304/11/0184 Institutional research plan: CEZ:AV0Z50390703 Institutional support: RVO:68378041 Keywords : extracellular matrix * link proteins * signal transmission Subject RIV: FH - Neurology Impact factor: 4.152, year: 2012

Numerical Modeling of Macroscopic Behavior of Particulate Composite with Crosslinked Polymer Matrix

Czech Academy of Sciences Publication Activity Database

Náhlík, Luboš; Máša, B.; Hutař, Pavel

2011-01-01

Roč. 465, - (2011), s. 129-132 ISSN 1013-9826 R&D Projects: GA ČR GA106/08/1409 Institutional research plan: CEZ:AV0Z20410507 Keywords : Particle reinforced composites * polymer matrix composite * mechanical response Subject RIV: JI - Composite Materials

Corrosion of Graphite Aluminum Metal Matrix Composites

Science.gov (United States)

1991-02-01

cathodic protection of G/AI MMCs resulted in overprotection 13. Overprotection resulted from a local increase in pH near cathodic sites during...34Cathodic Overprotection of SiC/6061-T6 and G/6061- T6 Aluminum Alloy Metal Matrix Composites," Scripta Metallurgica, 22 (1988) 413-418. 14. R

Comment on "Electron impact excitation of N-like ions from the ICFT R-matrix calculation" by HB Wang, G Jiang, XF Li, and ZC He in At. Data Nucl. Data Tables 120 (2018) 373-429

Science.gov (United States)

Aggarwal, Kanti M.

2018-03-01

The paper "Electron impact excitation of N-like ions from the ICFT R-matrix calculation" by Wang et al. [1] lacks details of calculations, presents only limited data, and has a few anomalies, as listed below.

Cheese Matrix Microstructure Studied by Advanced Microscopic Techniques

Czech Academy of Sciences Publication Activity Database

Burdiková, Z.; Hickey, C.; Auty, M. A. E.; Pala, J.; Švindrych, Z.; Steinmetz, I.; Krzyžánek, Vladislav; Hrubanová, Kamila; Sheehan, J. J.

2014-01-01

Roč. 20, S3 (2014), s. 1336-1337 ISSN 1431-9276 R&D Projects: GA MŠk(CZ) LO1212 Institutional support: RVO:68081731 Keywords : cheese matrix * cryo-SEM * confocal laser scanning microscopy Subject RIV: EA - Cell Biology Impact factor: 1.877, year: 2014

Postsynaptic density protein 95 in the striosome and matrix compartments of the human neostriatum.

Directory of Open Access Journals (Sweden)

Ryoma eMorigaki

2015-11-01

Full Text Available The human neostriatum consists of two functional subdivisions referred to as the striosome (patch and matrix compartments. The striosome-matrix dopamine systems play a central role in cortico-thalamo-basal ganglia circuits, and their involvement is thought to underlie the genesis of multiple movement and behavioral disorders, and of drug addiction. Human neuropathology also has shown that striosomes and matrix have differential vulnerability patterns in several striatal neurodegenerative diseases. Postsynaptic density protein 95 (PSD-95, also known as DLG4, is a major scaffolding protein in the postsynaptic densities of dendritic spines. PSD-95 is now known to negatively regulate not only N-methyl-D-aspartate glutamate signaling, but also dopamine D1 signals at sites of postsynaptic transmission. Accordingly, a neuroprotective role for PSD-95 against dopamine D1 receptor (D1R-mediated neurotoxicity in striatal neurodegeneration also has been suggested. Here, we used a highly sensitive immunohistochemistry technique to show that in the human neostriatum, PSD-95 is differentially concentrated in the striosome and matrix compartments, with a higher density of PSD-95 labeling in the matrix compartment than in the striosomes. This compartment-specific distribution of PSD-95 was strikingly complementary to that of D1R. In addition to the possible involvement of PSD-95-mediated synaptic function in compartment-specific dopamine signals, we suggest that the striosomes might be more susceptible to D1R-mediated neurotoxicity than the matrix compartment. This notion may provide new insight into the compartment-specific vulnerability of MSNs in striatal neurodegeneration.

Spectroscopy of lithium atoms sublimated from isolation matrix of solid Ne.

Science.gov (United States)

Sacramento, R L; Scudeller, L A; Lambo, R; Crivelli, P; Cesar, C L

2011-10-07

We have studied, via laser absorption spectroscopy, the velocity distribution of (7)Li atoms released from a solid neon matrix at cryogenic temperatures. The Li atoms are implanted into the Ne matrix by laser ablation of a solid Li precursor. A heat pulse is then applied to the sapphire substrate sublimating the matrix together with the isolated atoms at around 12 K. We find interesting differences in the velocity distribution of the released Li atoms from the model developed for our previous experiment with Cr [R. Lambo, C. C. Rodegheri, D. M. Silveira, and C. L. Cesar, Phys. Rev. A 76, 061401(R) (2007)]. This may be due to the sublimation regime, which is at much lower flux for the Li experiment than for the Cr experiment, as well as to the different collisional cross sections between those species to the Ne gas. We find a drift velocity compatible with Li being thermally sublimated at 11-13 K, while the velocity dispersion around this drift velocity is low, around 5-7 K. With a slow sublimation of the matrix we can determine the penetration depth of the laser ablated Li atoms into the Ne matrix, an important information that is not usually available in most matrix isolation spectroscopy setups. The present results with Li, together with the previous results with Cr suggest this to be a general technique for obtaining cryogenic atoms, for spectroscopic studies, as well as for trap loading. The release of the isolated atoms is also a useful tool to study and confirm details of the matrix isolated atoms which are masked or poorly understood in the solid. © 2011 American Institute of Physics

Effects of the hydraulic conductivity of the matrix/macropore interface on cumulative infiltrations into dual-permeability media

Science.gov (United States)

Lassabatere, L.; Peyrard, X.; Angulo-Jaramillo, R.; Simunek, J.

2009-12-01

Modeling of water infiltration into the vadose zone is important for better understanding of movement of water-transported contaminants. There is a great need to take into account the soil heterogeneity and, in particular, the presence of macropores or cracks that could generate preferential flow. Several mathematical models have been proposed to describe unsaturated flow through heterogeneous soils. The dual-permeability model (referred to as the 2K model) assumes that flow is governed by Richards equation in both porous regions (matrix and macropores). Water can be exchanged between the two regions following a first-order rate law. Although several studies have dealt with such modeling, no study has evaluated the influence of the hydraulic conductivity of the matrix/macropore interface on water cumulative infiltration. And this is the focus of this study. An analytical scaling method reveals the role of the following main parameters for given boundary and initial conditions: the saturated hydraulic conductivity ratio (R_Ks), the water pressure scale parameter ratio (R_hg), the saturated volumetric water content ratio (R_θs), and the shape parameters of the water retention and hydraulic conductivity functions. The last essential parameter is related to the interfacial hydraulic conductivity (Ka) between the macropore and matrix regions. The scaled 2K flow equations were solved using HYDRUS-1D 4.09 for the specific case of water infiltrating into an initially uniform soil profile and a zero pressure head at the soil surface. A sensitivity of water infiltration was studied for different sets of scale parameters (R_Ks, R_hg, R_θs, and shape parameters) and the scaled interfacial conductivity (Ka). Numerical results illustrate two extreme behaviors. When the interfacial conductivity is zero (i.e., no water exchange), water infiltrates separately into matrix and macropore regions, producing a much deeper moisture front in the macropore domain. In the opposite case

Efficient Tridiagonal Preconditioner for the Matrix-Free Truncated Newton Method

Czech Academy of Sciences Publication Activity Database

Lukšan, Ladislav; Vlček, Jan

2014-01-01

Roč. 235, 25 May (2014), s. 394-407 ISSN 0096-3003 R&D Projects: GA ČR GA13-06684S Institutional support: RVO:67985807 Keywords : unconstrained optimization * large scale optimization * matrix-free truncated Newton method * preconditioned conjugate gradient method * preconditioners obtained by the directional differentiation * numerical algorithms Subject RIV: BA - General Mathematics Impact factor: 1.551, year: 2014

Matrix completion by deep matrix factorization.

Science.gov (United States)

Fan, Jicong; Cheng, Jieyu

2018-02-01

Conventional methods of matrix completion are linear methods that are not effective in handling data of nonlinear structures. Recently a few researchers attempted to incorporate nonlinear techniques into matrix completion but there still exists considerable limitations. In this paper, a novel method called deep matrix factorization (DMF) is proposed for nonlinear matrix completion. Different from conventional matrix completion methods that are based on linear latent variable models, DMF is on the basis of a nonlinear latent variable model. DMF is formulated as a deep-structure neural network, in which the inputs are the low-dimensional unknown latent variables and the outputs are the partially observed variables. In DMF, the inputs and the parameters of the multilayer neural network are simultaneously optimized to minimize the reconstruction errors for the observed entries. Then the missing entries can be readily recovered by propagating the latent variables to the output layer. DMF is compared with state-of-the-art methods of linear and nonlinear matrix completion in the tasks of toy matrix completion, image inpainting and collaborative filtering. The experimental results verify that DMF is able to provide higher matrix completion accuracy than existing methods do and DMF is applicable to large matrices. Copyright © 2017 Elsevier Ltd. All rights reserved.

Analytical development of disturbed matrix eigenvalue problem applied to mixed convection stability analysis in Darcy media

Science.gov (United States)

Hamed, Haikel Ben; Bennacer, Rachid

2008-08-01

This work consists in evaluating algebraically and numerically the influence of a disturbance on the spectral values of a diagonalizable matrix. Thus, two approaches will be possible; to use the theorem of disturbances of a matrix depending on a parameter, due to Lidskii and primarily based on the structure of Jordan of the no disturbed matrix. The second approach consists in factorizing the matrix system, and then carrying out a numerical calculation of the roots of the disturbances matrix characteristic polynomial. This problem can be a standard model in the equations of the continuous media mechanics. During this work, we chose to use the second approach and in order to illustrate the application, we choose the Rayleigh-Bénard problem in Darcy media, disturbed by a filtering through flow. The matrix form of the problem is calculated starting from a linear stability analysis by a finite elements method. We show that it is possible to break up the general phenomenon into other elementary ones described respectively by a disturbed matrix and a disturbance. A good agreement between the two methods was seen. To cite this article: H.B. Hamed, R. Bennacer, C. R. Mecanique 336 (2008).

Mixed matrix membranes based on polyamide/montmorillonite for pervaporation of methanol-toluene mixture

Czech Academy of Sciences Publication Activity Database

Avagimova, N.; Polotskaya, G.; Saprykina, N.; Toikka, A.; Pientka, Zbyněk

2013-01-01

Roč. 48, č. 17 (2013), s. 2513-2523 ISSN 0149-6395 R&D Projects: GA ČR GA104/09/1165 Institutional support: RVO:61389013 Keywords : membranes * pervaporation * mixed matrix Subject RIV: CD - Macromolecular Chemistry Impact factor: 1.200, year: 2013

Classical r-matrices for the generalised Chern–Simons formulation of 3d gravity

Science.gov (United States)

Osei, Prince K.; Schroers, Bernd J.

2018-04-01

We study the conditions for classical r-matrices to be compatible with the generalised Chern–Simons action for 3d gravity. Compatibility means solving the classical Yang–Baxter equations with a prescribed symmetric part for each of the real Lie algebras and bilinear pairings arising in the generalised Chern–Simons action. We give a new construction of r-matrices via a generalised complexification and derive a non-linear set of matrix equations determining the most general compatible r-matrix. We exhibit new families of solutions and show that they contain some known r-matrices for special parameter values.

The extracellular matrix and altered diffusion in focal cortical dysplasia

Czech Academy of Sciences Publication Activity Database

Homola, Aleš; Vargová, Lýdia; Cicanič, Michal; Zámečník, J.; Marusič, P.; Kršek, P.; Syková, Eva

2011-01-01

Roč. 59, S1 (2011), S106-S106 ISSN 0894-1491. [European meeting on Glia l Cells in Health and Disease /10./. 13.09.2011-17.09.2011, Prague] R&D Projects: GA MŠk 1M0538; GA ČR GA309/09/1597 Institutional research plan: CEZ:AV0Z50390703 Keywords : focal cortical dysplasia * diffusion * extracellular matrix Subject RIV: FH - Neurology

Extracellular Matrix Hydrogel Derived from Human Umbilical Cord as a Scaffold for Neural Tissue Repair and Its Comparison with Extracellular Matrix from Porcine Tissues

Czech Academy of Sciences Publication Activity Database

Kočí, Zuzana; Výborný, Karel; Dubišová, Jana; Vacková, Irena; Jäger, Aleš; Lunov, Oleg; Jiráková, Klára; Kubinová, Šárka

2017-01-01

Roč. 23, č. 6 (2017), s. 333-345 ISSN 1937-3384 R&D Projects: GA ČR(CZ) GA15-01396S; GA MŠk(CZ) LO1309; GA MŠk(CZ) ED1.1.00/02.0109; GA MŠk(CZ) EF15_003/0000419 Grant - others:AV ČR(CZ) Fellowship J. E. Purkyně Institutional support: RVO:68378041 ; RVO:68378271 Keywords : extracellular matrix * hydrogel * umbilical cord Subject RIV: FH - Neurology; EB - Genetics ; Molecular Biology (FZU-D) OBOR OECD: Neurosciences (including psychophysiology; Biophysics (FZU-D)

Updated User's Guide for Sammy: Multilevel R-Matrix Fits to Neutron Data Using Bayes' Equations

Energy Technology Data Exchange (ETDEWEB)

Larson, Nancy M [ORNL

2008-10-01

In 1980 the multilevel multichannel R-matrix code SAMMY was released for use in analysis of neutron-induced cross section data at the Oak Ridge Electron Linear Accelerator. Since that time, SAMMY has evolved to the point where it is now in use around the world for analysis of many different types of data. SAMMY is not limited to incident neutrons but can also be used for incident protons, alpha particles, or other charged particles; likewise, Coulomb exit hannels can be included. Corrections for a wide variety of experimental conditions are available in the code: Doppler and resolution broadening, multiple-scattering corrections for capture or reaction yields, normalizations and backgrounds, to name but a few. The fitting procedure is Bayes' method, and data and parameter covariance matrices are properly treated within the code. Pre- and post-processing capabilities are also available, including (but not limited to) connections with the Evaluated Nuclear Data Files. Though originally designed for use in the resolved resonance region, SAMMY also includes a treatment for data analysis in the unresolved resonance region.

Development and optimization of manufacture process for heat resistant fibre reinforced ceramic matrix composites

Czech Academy of Sciences Publication Activity Database

Glogar, Petr; Hron, P.; Burian, M.; Balík, Karel; Černý, Martin; Sucharda, Zbyněk; Vymazalová, Z.; Červencl, J.; Pivoňka, M.

-, č. 14 (2005), 25-32 ISSN 1214-9691 R&D Projects: GA ČR(CZ) GA106/02/0177 Institutional research plan: CEZ:AV0Z30460519 Keywords : polysiloxane resin * pyrolysis * ceramic matrix composite Subject RIV: JI - Composite Materials

From polymers to quantum gravity: Triple-scaling in rectangular random matrix models

International Nuclear Information System (INIS)

Myers, R.C.; Periwal, V.

1993-01-01

Rectangular NxM matrix models can be solved in several qualitatively distinct large-N limits, since two independent parameters govern the size of the matrix. Regarded as models of random surfaces, these matrix models interpolate between branched polymer behaviour and two-dimensional quantum gravity. We solve such models in a 'triple-scaling' regime in this paper, with N and M becoming large independently. A correspondence between phase transitions and singularities of mappings from R 2 to R 2 is indicated. At different critical points, the scaling behaviour is determined by (i) two decoupled ordinary differential equations; (ii) an ordinary differential equation and a finite-difference equation; or (iii) two coupled partial differential equations. The Painleve II equation arises (in conjunction with a difference equation) at a point associated with branched polymers. For critical points described by partial differential equations, there are dual weak-coupling/strong-coupling expansions. It is conjectured that the new physics is related to microscopic topology fluctuations. (orig.)

Preconditioner Updates for Solving Sequences of Linear Systems in Matrix-Free Environment

Czech Academy of Sciences Publication Activity Database

Duintjer Tebbens, Jurjen; Tůma, Miroslav

2010-01-01

Roč. 17, č. 6 (2010), s. 997-1019 ISSN 1070-5325 R&D Projects: GA AV ČR IAA100300802; GA AV ČR KJB100300703 Grant - others:GA AV ČR(CZ) M100300902 Institutional research plan: CEZ:AV0Z10300504 Source of funding: I - inštitucionálna podpora na rozvoj VO Keywords : preconditioned iterative methods * matrix-free environment * factorization updates * inexact Newton-Krylov methods * incomplete factorizations Subject RIV: BA - General Mathematics Impact factor: 1.163, year: 2010

Inverse mass matrix via the method of localized lagrange multipliers

Czech Academy of Sciences Publication Activity Database

González, José A.; Kolman, Radek; Cho, S.S.; Felippa, C.A.; Park, K.C.

2018-01-01

Roč. 113, č. 2 (2018), s. 277-295 ISSN 0029-5981 R&D Projects: GA MŠk(CZ) EF15_003/0000493; GA ČR GA17-22615S Institutional support: RVO:61388998 Keywords : explicit time integration * inverse mass matrix * localized Lagrange multipliers * partitioned analysis Subject RIV: BI - Acoustics OBOR OECD: Applied mechanics Impact factor: 2.162, year: 2016 https://onlinelibrary.wiley.com/doi/10.1002/nme.5613

Regulation of extracellular matrix vesicles via rapid responses to steroid hormones during endochondral bone formation.

Science.gov (United States)

Asmussen, Niels; Lin, Zhao; McClure, Michael J; Schwartz, Zvi; Boyan, Barbara D

2017-12-09

Endochondral bone formation is a precise and highly ordered process whose exact regulatory framework is still being elucidated. Multiple regulatory pathways are known to be involved. In some cases, regulation impacts gene expression, resulting in changes in chondrocyte phenotypic expression and extracellular matrix synthesis. Rapid regulatory mechanisms are also involved, resulting in release of enzymes, factors and micro RNAs stored in extracellular matrisomes called matrix vesicles. Vitamin D metabolites modulate endochondral development via both genomic and rapid membrane-associated signaling pathways. 1α,25-dihydroxyvitamin D3 [1α,25(OH) 2 D 3 ] acts through the vitamin D receptor (VDR) and a membrane associated receptor, protein disulfide isomerase A3 (PDIA3). 24R,25-dihydroxyvitamin D3 [24R,25(OH) 2 D 3 ] affects primarily chondrocytes in the resting zone (RC) of the growth plate, whereas 1α,25(OH) 2 D 3 affects cells in the prehypertrophic and upper hypertrophic cell zones (GC). This includes genomically directing the cells to produce matrix vesicles with zone specific characteristics. In addition, vitamin D metabolites produced by the cells interact directly with the matrix vesicle membrane via rapid signal transduction pathways, modulating their activity in the matrix. The matrix vesicle payload is able to rapidly impact the extracellular matrix via matrix processing enzymes as well as providing a feedback mechanism to the cells themselves via the contained micro RNAs. Copyright © 2017. Published by Elsevier Inc.

Orthogonal and symplectic Yangians and Yang–Baxter R-operators

International Nuclear Information System (INIS)

Isaev, A.P.; Karakhanyan, D.; Kirschner, R.

2016-01-01

Yang–Baxter R operators symmetric with respect to the orthogonal and symplectic algebras are considered in an uniform way. Explicit forms for the spinorial and metaplectic R operators are obtained. L operators, obeying the RLL relation with the orthogonal or symplectic fundamental R matrix, are considered in the interesting cases, where their expansion in inverse powers of the spectral parameter is truncated. Unlike the case of special linear algebra symmetry the truncation results in additional conditions on the Lie algebra generators of which the L operators is built and which can be fulfilled in distinguished representations only. Further, generalized L operators, obeying the modified RLL relation with the fundamental R matrix replaced by the spinorial or metaplectic one, are considered in the particular case of linear dependence on the spectral parameter. It is shown how by fusion with respect to the spinorial or metaplectic representation these first order spinorial L operators reproduce the ordinary L operators with second order truncation.

Orthogonal and symplectic Yangians and Yang–Baxter R-operators

Energy Technology Data Exchange (ETDEWEB)

Isaev, A.P., E-mail: isaevap@theor.jinr.ru [Bogoliubov Lab., Joint Institute of Nuclear Research, Dubna (Russian Federation); Karakhanyan, D., E-mail: karakhan@yerphi.am [Yerevan Physics Institute, 2 Alikhanyan br., 0036 Yerevan (Armenia); Kirschner, R., E-mail: Roland.Kirschner@itp.uni-leipzig.de [Institut für Theoretische Physik, Universität Leipzig, PF 100 920, D-04009 Leipzig (Germany)

2016-03-15

Yang–Baxter R operators symmetric with respect to the orthogonal and symplectic algebras are considered in an uniform way. Explicit forms for the spinorial and metaplectic R operators are obtained. L operators, obeying the RLL relation with the orthogonal or symplectic fundamental R matrix, are considered in the interesting cases, where their expansion in inverse powers of the spectral parameter is truncated. Unlike the case of special linear algebra symmetry the truncation results in additional conditions on the Lie algebra generators of which the L operators is built and which can be fulfilled in distinguished representations only. Further, generalized L operators, obeying the modified RLL relation with the fundamental R matrix replaced by the spinorial or metaplectic one, are considered in the particular case of linear dependence on the spectral parameter. It is shown how by fusion with respect to the spinorial or metaplectic representation these first order spinorial L operators reproduce the ordinary L operators with second order truncation.

Orthogonal and symplectic Yangians and Yang–Baxter R-operators

Directory of Open Access Journals (Sweden)

A.P. Isaev

2016-03-01

Full Text Available Yang–Baxter R operators symmetric with respect to the orthogonal and symplectic algebras are considered in an uniform way. Explicit forms for the spinorial and metaplectic R operators are obtained. L operators, obeying the RLL relation with the orthogonal or symplectic fundamental R matrix, are considered in the interesting cases, where their expansion in inverse powers of the spectral parameter is truncated. Unlike the case of special linear algebra symmetry the truncation results in additional conditions on the Lie algebra generators of which the L operators is built and which can be fulfilled in distinguished representations only. Further, generalized L operators, obeying the modified RLL relation with the fundamental R matrix replaced by the spinorial or metaplectic one, are considered in the particular case of linear dependence on the spectral parameter. It is shown how by fusion with respect to the spinorial or metaplectic representation these first order spinorial L operators reproduce the ordinary L operators with second order truncation.

On the Numerical Behavior of Matrix Splitting Iteration Methods for Solving Linear Systems

Czech Academy of Sciences Publication Activity Database

Bai, Z.-Z.; Rozložník, Miroslav

2015-01-01

Roč. 53, č. 4 (2015), s. 1716-1737 ISSN 0036-1429 R&D Projects: GA ČR GA13-06684S Institutional support: RVO:67985807 Keywords : matrix splitting * stationary iteration method * backward error * rounding error analysis Subject RIV: BA - General Mathematics Impact factor: 1.899, year: 2015

Supergravity duals of matrix string theory

International Nuclear Information System (INIS)

Morales, Jose F.; Samtleben, Henning

2002-01-01

We study holographic duals of type II and heterotic matrix string theories described by warped AdS 3 supergravities. By explicitly solving the linearized equations of motion around near horizon D-string geometries, we determine the spectrum of Kaluza-Klein primaries for type I, II supergravities on warped AdS 3 xS 7 . The results match those coming from the dual two-dimensional gauge theories living on the D-string worldvolumes. We briefly discuss the connections with the N=(8,8), N=(8,0) orbifold superconformal field theories to which type IIB/heterotic matrix strings flow in the infrared. In particular, we associate the dimension (h,h-bar) (32,32) twisted operator which brings the matrix string theories out from the conformal point (R; 8 ) N /S N with the dilaton profile in the supergravity background. The familiar dictionary between masses and 'scaling' dimensions of field and operators are modified by the presence of non-trivial warp factors and running dilatons. These modifications are worked out for the general case of domain wall/QFT correspondences between supergravities on warped AdS d+1 xS q geometries and super Yang-Mills theories with 16 supercharges. (author)

Theoretical Prediction of Vibrational Circular Dichroism Spectra of R- Glyceraldehyde, R-Erythrose, and R-Threose. 2. Development of a Procedure to Scale the Force Constant Matrix Expressed in Terms of Internal Coordinates

Science.gov (United States)

1993-11-01

IS PROGRAM NUMBER 1 OF THE COMPLETE VIBRATIONAL PACKAGE. C C BMAT ... WIL.riON B MATRIX ELDEMETS FOR INTERNAL COORDINATES C iVERSIONO JUL 28, 1977) C...MATRIX ISCAN=ISCAN+ 1 IER=O GO TO 30 210 WRITE(6,1120) STOP 1000 FORMAT(20A4/20A4/214) 1010 FORMAT(’l’,20A4,24X.’ BMAT (VERSIONO JUL 28. 1977)’/1X,20A4

Differential Expression and Processing of Matrix Metalloproteinase 19 Marks Progression of Gastrointestinal Diseases

Czech Academy of Sciences Publication Activity Database

Červinková, Monika; Horák, P.; Kanchev, Ivan; Matej, R.; Fanta, J.; Sequens, R.; Kašpárek, Petr; Sarnová, Lenka; Turečková, Jolana; Sedláček, Radislav

2014-01-01

Roč. 60, č. 3 (2014), s. 113-122 ISSN 0015-5500 R&D Projects: GA ČR GAP302/11/2048; GA ČR GAP303/10/2044; GA MŠk(CZ) ED1.1.00/02.0109; GA MŠk EE.2.3.20.0102 Institutional support: RVO:68378050 Keywords : matrix metalloproteinase 19 * macrophages * colon cancer Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 1.000, year: 2014

High-dimensional statistical inference: From vector to matrix

Science.gov (United States)

Zhang, Anru

Statistical inference for sparse signals or low-rank matrices in high-dimensional settings is of significant interest in a range of contemporary applications. It has attracted significant recent attention in many fields including statistics, applied mathematics and electrical engineering. In this thesis, we consider several problems in including sparse signal recovery (compressed sensing under restricted isometry) and low-rank matrix recovery (matrix recovery via rank-one projections and structured matrix completion). The first part of the thesis discusses compressed sensing and affine rank minimization in both noiseless and noisy cases and establishes sharp restricted isometry conditions for sparse signal and low-rank matrix recovery. The analysis relies on a key technical tool which represents points in a polytope by convex combinations of sparse vectors. The technique is elementary while leads to sharp results. It is shown that, in compressed sensing, delta kA 0, delta kA < 1/3 + epsilon, deltak A + thetak,kA < 1 + epsilon, or deltatkA< √(t - 1) / t + epsilon are not sufficient to guarantee the exact recovery of all k-sparse signals for large k. Similar result also holds for matrix recovery. In addition, the conditions delta kA<1/3, deltak A+ thetak,kA<1, delta tkA < √(t - 1)/t and deltarM<1/3, delta rM+ thetar,rM<1, delta trM< √(t - 1)/ t are also shown to be sufficient respectively for stable recovery of approximately sparse signals and low-rank matrices in the noisy case. For the second part of the thesis, we introduce a rank-one projection model for low-rank matrix recovery and propose a constrained nuclear norm minimization method for stable recovery of low-rank matrices in the noisy case. The procedure is adaptive to the rank and robust against small perturbations. Both upper and lower bounds for the estimation accuracy under the Frobenius norm loss are obtained. The proposed estimator is shown to be rate-optimal under certain conditions. The

Efficient Matrix Models for Relational Learning

Science.gov (United States)

2009-10-01

base learners and h1:r is the ensemble learner. For example, consider the case where h1, . . . , hr are linear discriminants. The weighted vote of...a multilinear form naturally leads one to consider tensor factorization: e.g., UAV T is a special case of Tucker decomposition [129] on a 2D- tensor , a...matrix. Our five modeling choices can also be used to differentiate tensor factorizations, but the choices may be subtler for tensors than for

On the q-exponential of matrix q-Lie algebras

Directory of Open Access Journals (Sweden)

Ernst Thomas

2017-01-01

Full Text Available In this paper, we define several new concepts in the borderline between linear algebra, Lie groups and q-calculus.We first introduce the ring epimorphism r, the set of all inversions of the basis q, and then the important q-determinant and corresponding q-scalar products from an earlier paper. Then we discuss matrix q-Lie algebras with a modified q-addition, and compute the matrix q-exponential to form the corresponding n × n matrix, a so-called q-Lie group, or manifold, usually with q-determinant 1. The corresponding matrix multiplication is twisted under τ, which makes it possible to draw diagrams similar to Lie group theory for the q-exponential, or the so-called q-morphism. There is no definition of letter multiplication in a general alphabet, but in this article we introduce new q-number systems, the biring of q-integers, and the extended q-rational numbers. Furthermore, we provide examples of matrices in suq(4, and its corresponding q-Lie group. We conclude with an example of system of equations with Ward number coeficients.

Organization of the expanded cumulus-extracellular matrix in preovulatory follicles: arole for inter-alpha-trypsin inhibitor.

Czech Academy of Sciences Publication Activity Database

Nagyová, Eva

2015-01-01

Roč. 49, č. 1 (2015), s. 37-45 ISSN 1210-0668 R&D Projects: GA ČR GA305/05/0960 Institutional support: RVO:67985904 Keywords : cumulus expansion * cumulus-extracellular matrix * hyaluronan Subject RIV: ED - Physiology

Solidification processing of monotectic alloy matrix composites

Science.gov (United States)

Frier, Nancy L.; Shiohara, Yuh; Russell, Kenneth C.

1989-01-01

Directionally solidified aluminum-indium alloys of the monotectic composition were found to form an in situ rod composite which obeys a lambda exp 2 R = constant relation. The experimental data shows good agreement with previously reported results. A theoretical boundary between cellular and dendritic growth conditions was derived and compared with experiments. The unique wetting characteristics of the monotectic alloys can be utilized to tailor the interface structure in metal matrix composites. Metal matrix composites with monotectic and hypermonotectic Al-In matrices were made by pressure infiltration, remelted and directionally solidified to observe the wetting characteristics of the alloys as well as the effect on structure of solidification in the constrained field of the fiber interstices. Models for monotectic growth are modified to take into account solidification in these constrained fields.

Matrix product operators, matrix product states, and ab initio density matrix renormalization group algorithms

Science.gov (United States)

Chan, Garnet Kin-Lic; Keselman, Anna; Nakatani, Naoki; Li, Zhendong; White, Steven R.

2016-07-01

Current descriptions of the ab initio density matrix renormalization group (DMRG) algorithm use two superficially different languages: an older language of the renormalization group and renormalized operators, and a more recent language of matrix product states and matrix product operators. The same algorithm can appear dramatically different when written in the two different vocabularies. In this work, we carefully describe the translation between the two languages in several contexts. First, we describe how to efficiently implement the ab initio DMRG sweep using a matrix product operator based code, and the equivalence to the original renormalized operator implementation. Next we describe how to implement the general matrix product operator/matrix product state algebra within a pure renormalized operator-based DMRG code. Finally, we discuss two improvements of the ab initio DMRG sweep algorithm motivated by matrix product operator language: Hamiltonian compression, and a sum over operators representation that allows for perfect computational parallelism. The connections and correspondences described here serve to link the future developments with the past and are important in the efficient implementation of continuing advances in ab initio DMRG and related algorithms.

Interplay of Matrix Stiffness and c-SRC in Hepatic Fibrosis

DEFF Research Database (Denmark)

Görtzen, Jan; Schierwagen, Robert; Bierwolf, Jeanette

2015-01-01

. This study investigated the interaction of c-SRC and RhoA under different matrix stiffness conditions. METHODS: Liver fibrosis was induced in rats using bile duct ligation (BDL), thioacetamide (TAA) or carbon tetrachloride (CCl4) models. mRNA levels of albumin, PDGF-R, RHOA, COL1A1, and αSMA were analyzed......INTRODUCTION: In liver fibrosis activation of hepatic stellate cells (HSC) comprises phenotypical change into profibrotic and myofibroplastic cells with increased contraction and secretion of extracellular matrix (ECM) proteins. The small GTPase RhoA orchestrates cytoskeleton formation, migration......, and mobility via non-receptor tyrosine-protein kinase c-SRC (cellular sarcoma) in different cells. Furthermore, RhoA and its downstream effector Rho-kinase also play a crucial role in hepatic stellate cells and hepatic fibrogenesis. Matrix stiffness promotes HSC activation via cytoskeleton modulation...

Application of mixture experimental design in the formulation and optimization of matrix tablets containing carbomer and hydroxy-propylmethylcellulose.

Science.gov (United States)

Petrovic, Aleksandra; Cvetkovic, Nebojsa; Ibric, Svetlana; Trajkovic, Svetlana; Djuric, Zorica; Popadic, Dragica; Popovic, Radmila

2009-12-01

Using mixture experimental design, the effect of carbomer (Carbopol((R)) 971P NF) and hydroxypropylmethylcellulose (Methocel((R)) K100M or Methocel((R)) K4M) combination on the release profile and on the mechanism of drug liberation from matrix tablet was investigated. The numerical optimization procedure was also applied to establish and obtain formulation with desired drug release. The amount of TP released, release rate and mechanism varied with carbomer ratio in total matrix and HPMC viscosity. Increasing carbomer fractions led to a decrease in drug release. Anomalous diffusion was found in all matrices containing carbomer, while Case - II transport was predominant for tablet based on HPMC only. The predicted and obtained profiles for optimized formulations showed similarity. Those results indicate that Simplex Lattice Mixture experimental design and numerical optimization procedure can be applied during development to obtain sustained release matrix formulation with desired release profile.

Metal particles constraint in glass matrix composites and its impact on fracture toughness enhancement

Czech Academy of Sciences Publication Activity Database

Kotoul, M.; Dlouhý, Ivo

387-389 (2004), s. 404-408 ISSN 0921-5093 R&D Projects: GA ČR GA101/02/0683 Institutional research plan: CEZ:AV0Z2041904 Keywords : brittle matrix composites * crack bridging * crack trapping Subject RIV: JH - Ceramics, Fire-Resistant Materials and Glass Impact factor: 1.445, year: 2004

New classical r-matrices from integrable non-linear sigma-models

International Nuclear Information System (INIS)

Laartz, J.; Bordemann, M.; Forger, M.; Schaper, U.

1993-01-01

Non-linear sigma models on Riemannian symmetric spaces constitute the most general class of classical non-linear sigma models which are known to be integrable. Using the current algebra structure of these models their canonical structure is analyzed and it is shown that their non-ultralocal fundamental Poisson bracket relation is governed by a field dependent non antisymmetric r-matrix obeying a dynamical Yang Baxter equation. The fundamental Poisson bracket relations and the r-matrix are derived explicitly and a new kind of algebra is found that is supposed to replace the classical Yang Baxter algebra governing the canonical structure of ultralocal models. (Author) 9 refs

Myristoylation drives dimerization of matrix protein from mouse mammary tumor virus

Czech Academy of Sciences Publication Activity Database

Doležal, Michal; Zábranský, Aleš; Dostál, Jiří; Vaněk, O.; Brynda, Jiří; Lepšík, Martin; Hadravová, Romana; Pichová, Iva

2016-01-01

Roč. 13, Jan 5 (2016), č. článku 2. ISSN 1742-4690 R&D Projects: GA MŠk LO1302; GA MŠk(CZ) LO1304; GA ČR GBP208/12/G016 Institutional support: RVO:61388963 Keywords : dimerization * matrix protein * MMTV * molecular dynamics * mouse mammary tumor virus * myristoylation Subject RIV: CE - Biochemistry Impact factor: 3.867, year: 2016 http://retrovirology.biomedcentral.com/articles/10.1186/s12977-015-0235-8

Solution of the scattering T matrix equation in discrete complex momentum space

International Nuclear Information System (INIS)

Rawitscher, G.H.; Delic, G.

1984-01-01

The scattering solution to the Lippmann-Schwinger equation is expanded into a set of spherical Bessel functions of complex wave numbers, K/sub j/, with j = 1,2 , . . . , M. The value of each K/sub j/ is determined from the condition that the spherical Bessel function smoothly matches onto an asymptotically outgoing spherical Hankel (or Coulomb) function of the correct physical wave number at a matching point R. The spherical Bessel functions thus determined are Sturmian functions, and they form a complete set in the interval 0 to R. The coefficients of the expansion of the scattering function are determined by matrix inversion of a linear set of algebraic equations, which are equivalent to the solution of the T-matrix equation in complex momentum space. In view of the presence of a matching radius, no singularities are encountered for the Green's functions, and the inclusion of Coulomb potentials offers no computational difficulties. Three numerical examples are performed in order to illustrate the convergence of the elastic scattering matrix S with M. One of these consists of a set of coupled equations which describe the breakup of a deuteron as it scatters from the nucleus on 58 Ni. A value of M of 15 or less is found sufficient to reproduce the exact S matrix element to an accuracy of four figures after the decimal point

Limit theorems for linear spectrum statistics of orthogonal polynomial ensembles and their applications in random matrix theory

Science.gov (United States)

Pan, Guangming; Wang, Shaochen; Zhou, Wang

2017-10-01

In this paper, we consider the asymptotic behavior of Xfn (n )≔∑i=1 nfn(xi ) , where xi,i =1 ,…,n form orthogonal polynomial ensembles and fn is a real-valued, bounded measurable function. Under the condition that Var Xfn (n )→∞ , the Berry-Esseen (BE) bound and Cramér type moderate deviation principle (MDP) for Xfn (n ) are obtained by using the method of cumulants. As two applications, we establish the BE bound and Cramér type MDP for linear spectrum statistics of Wigner matrix and sample covariance matrix in the complex cases. These results show that in the edge case (which means fn has a particular form f (x ) I (x ≥θn ) where θn is close to the right edge of equilibrium measure and f is a smooth function), Xfn (n ) behaves like the eigenvalues counting function of the corresponding Wigner matrix and sample covariance matrix, respectively.

Photoionization of Co+ and electron-impact excitation of Co2 + using the Dirac R-matrix method

Science.gov (United States)

Tyndall, N. B.; Ramsbottom, C. A.; Ballance, C. P.; Hibbert, A.

2016-11-01

Modelling of massive stars and supernovae (SNe) plays a crucial role in understanding galaxies. From this modelling we can derive fundamental constraints on stellar evolution, mass-loss processes, mixing, and the products of nucleosynthesis. Proper account must be taken of all important processes that populate and depopulate the levels (collisional excitation, de-excitation, ionization, recombination, photoionization, bound-bound processes). For the analysis of Type Ia SNe and core collapse SNe (Types Ib, Ic and II) Fe group elements are particularly important. Unfortunately little data is currently available and most noticeably absent are the photoionization cross-sections for the Fe-peaks which have high abundances in SNe. Important interactions for both photoionization and electron-impact excitation are calculated using the relativistic Dirac atomic R-matrix codes (DARC) for low-ionization stages of Cobalt. All results are calculated up to photon energies of 45 eV and electron energies up to 20 eV. The wavefunction representation of Co III has been generated using GRASP0 by including the dominant 3d7, 3d6[4s, 4p], 3p43d9 and 3p63d9 configurations, resulting in 292 fine structure levels. Electron-impact collision strengths and Maxwellian averaged effective collision strengths across a wide range of astrophysically relevant temperatures are computed for Co III. In addition, statistically weighted level-resolved ground and metastable photoionization cross-sections are presented for Co II and compared directly with existing work.

Mifepristone inhibits extracellular matrix formation in uterine leiomyoma.

Science.gov (United States)

Patel, Amrita; Malik, Minnie; Britten, Joy; Cox, Jeris; Catherino, William H

2016-04-01

To characterize the efficacy of mifepristone treatment on extracellular matrix (ECM) production in leiomyomas. Laboratory study. University research laboratory. None. Treatment of human immortalized two-dimensional (2D) and three-dimensional (3D) leiomyoma and myometrial cells with mifepristone and the progestin promegestone (R5020). Expression of COL1A1, fibronectin, versican variant V0, and dermatopontin in treated leiomyoma cells by Western blot analysis and confirmatory immunohistochemistry staining of treated 3D cultures. Treatment with progestin stimulated production of COL1A1, fibronectin, versican, and dermatopontin. Mifepristone treatment inhibited protein production of these genes, most notably with versican expression. Combination treatment with both the agonist and antagonist further inhibited protein expression of these genes. Immunohistochemistry performed on 3D cultures demonstrated generalized inhibition of ECM protein concentration. Our study demonstrated that the progesterone agonist R5020 directly stimulated extracellular matrix components COL1A1, fibronectin, versican, and dermatopontin production in human leiomyoma cells. Progesterone antagonist mifepristone decreased protein production of these genes to levels comparable with untreated leiomyoma cells. Published by Elsevier Inc.

Effect of static pre-loading on fracture toughness of Nicalon fibre glass matrix composite

Czech Academy of Sciences Publication Activity Database

Dlouhý, Ivo; Chlup, Zdeněk; Chawla, K. K.; Kulkarmi, R.; Koopman, M.; Boccaccini, A. R.

č. 367 (2004), s. 17-23 ISSN 0921-5093 R&D Projects: GA AV ČR IAA2041003; GA MŠk ME 491 Institutional research plan: CEZ:AV0Z2041904 Keywords : Nicalon fibre * glass matrix composite * fracture toughness Subject RIV: JL - Materials Fatigue, Friction Mechanics Impact factor: 1.445, year: 2004

R-Ras regulates migration through an interaction with filamin A in melanoma cells.

Directory of Open Access Journals (Sweden)

Joanna E Gawecka

2010-06-01

Full Text Available Changes in cell adhesion and migration in the tumor microenvironment are key in the initiation and progression of metastasis. R-Ras is one of several small GTPases that regulate cell adhesion and migration on the extracellular matrix, however the mechanism has not been completely elucidated. Using a yeast two-hybrid approach we sought to identify novel R-Ras binding proteins that might mediate its effects on integrins.We identified Filamin A (FLNa as a candidate interacting protein. FLNa is an actin-binding scaffold protein that also binds to integrin beta1, beta2 and beta7 tails and is associated with diverse cell processes including cell migration. Indeed, M2 melanoma cells require FLNa for motility. We further show that R-Ras and FLNa interact in co-immunoprecipitations and pull-down assays. Deletion of FLNa repeat 3 (FLNaDelta3 abrogated this interaction. In M2 melanoma cells active R-Ras co-localized with FLNa but did not co-localize with FLNa lacking repeat 3. Thus, activated R-Ras binds repeat 3 of FLNa. The functional consequence of this interaction was that active R-Ras and FLNa coordinately increased cell migration. In contrast, co-expression of R-Ras and FLNaDelta3 had a significantly reduced effect on migration. While there was enhancement of integrin activation and fibronectin matrix assembly, cell adhesion was not altered. Finally, siRNA knockdown of endogenous R-Ras impaired FLNa-dependent fibronectin matrix assembly.These data support a model in which R-Ras functionally associates with FLNa and thereby regulates integrin-dependent migration. Thus in melanoma cells R-Ras and FLNa may cooperatively promote metastasis by enhancing cell migration.

Acid-base-driven matrix-assisted mass spectrometry for targeted metabolomics

Czech Academy of Sciences Publication Activity Database

Shroff, R.; Rulíšek, Lubomír; Doubský, J.; Svatoš, Aleš

2009-01-01

Roč. 106, č. 25 (2009), s. 10092-10096 ISSN 0027-8424 R&D Projects: GA MŠk LC512 Institutional research plan: CEZ:AV0Z40550506 Keywords : clinical diagnostic * matrix design * positive/negative ions * MALDI Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 9.432, year: 2009

A Slater parameter optimisation interface for the CIV3 atomic structure code and its possible use with the R-matrix close coupling collision code

International Nuclear Information System (INIS)

Fawcett, B.C.; Hibbert, A.

1989-11-01

Details are here provided of amendments to the atomic structure code CIV3 which allow the optional adjustment of Slater parameters and average energies of configurations so that they result in improved energy levels and eigenvectors. It is also indicated how, in principle, the resultant improved eigenvectors can be utilised by the R-matrix collision code, thus providing an optimised target for close coupling collision strength calculations. An analogous computational method was recently reported for distorted wave collision strength calculations and applied to Fe XIII. The general method is suitable for the computation of collision strengths for complex ions and in some cases can then provide a basis for collision strength calculations in ions where ab initio computations break down or result in unnecessarily large errors. (author)

Exact solution of Chern-Simons-matter matrix models with characteristic/orthogonal polynomials

International Nuclear Information System (INIS)

Tierz, Miguel

2016-01-01

We solve for finite N the matrix model of supersymmetric U(N) Chern-Simons theory coupled to N f fundamental and N f anti-fundamental chiral multiplets of R-charge 1/2 and of mass m, by identifying it with an average of inverse characteristic polynomials in a Stieltjes-Wigert ensemble. This requires the computation of the Cauchy transform of the Stieltjes-Wigert polynomials, which we carry out, finding a relationship with Mordell integrals, and hence with previous analytical results on the matrix model. The semiclassical limit of the model is expressed, for arbitrary N f , in terms of a single Hermite polynomial. This result also holds for more general matter content, involving matrix models with double-sine functions.

Investigation of bar system modal characteristics using Dynamic Stiffness Matrix polynomial approximations

Czech Academy of Sciences Publication Activity Database

Náprstek, Jiří; Fischer, Cyril

2017-01-01

Roč. 180, February (2017), s. 3-12 ISSN 0045-7949 R&D Projects: GA ČR(CZ) GA15-01035S Institutional support: RVO:68378297 Keywords : Dynamic Stiffness Matrix * lambda matrices * self-adjoint operators * approximation in frequency domain * Wittrick-Williams algorithm Subject RIV: JM - Building Engineering OBOR OECD: Construction engineering, Municipal and structural engineering Impact factor: 2.847, year: 2016 http://www.sciencedirect.com/science/article/pii/S0045794916310495

An estimate on the purely imaginary poles of scattering matrix

International Nuclear Information System (INIS)

Bozhkov, Y.D.

1988-12-01

In this work we obtain two estimates (upper and lower) on the number of purely imaginary poles of the scattering matrix for the wave equation in the exterior of a compact smooth obstacle in R n , n ≥ 3 odd. The method of Lax and Phillips is used. (author). 5 refs

Oscillator strengths and transition probabilities from the Breit–Pauli R-matrix method: Ne IV

Energy Technology Data Exchange (ETDEWEB)

Nahar, Sultana N., E-mail: nahar@astronomy.ohio-state.edu

2014-09-15

The atomic parameters–oscillator strengths, line strengths, radiative decay rates (A), and lifetimes–for fine structure transitions of electric dipole (E1) type for the astrophysically abundant ion Ne IV are presented. The results include 868 fine structure levels with n≤ 10, l≤ 9, and 1/2≤J≤ 19/2 of even and odd parities, and the corresponding 83,767 E1 transitions. The calculations were carried out using the relativistic Breit–Pauli R-matrix method in the close coupling approximation. The transitions have been identified spectroscopically using an algorithm based on quantum defect analysis and other criteria. The calculated energies agree with the 103 observed and identified energies to within 3% or better for most of the levels. Some larger differences are also noted. The A-values show good to fair agreement with the very limited number of available transitions in the table compiled by NIST, but show very good agreement with the latest published multi-configuration Hartree–Fock calculations. The present transitions should be useful for diagnostics as well as for precise and complete spectral modeling in the soft X-ray to infra-red regions of astrophysical and laboratory plasmas. -- Highlights: •The first application of BPRM method for accurate E1 transitions in Ne IV is reported. •Amount of atomic data (n going up to 10) is complete for most practical applications. •The calculated energies are in very good agreement with most observed levels. •Very good agreement of A-values and lifetimes with other relativistic calculations. •The results should provide precise nebular abundances, chemical evolution etc.

A holographic view on matrix model of black hole

International Nuclear Information System (INIS)

Suyama, Takao; Yi Piljin

2004-01-01

We investigate a deformed matrix model proposed by Kazakov et.al. in relation to Witten's two-dimensional black hole. The existing conjectures assert the equivalence of the two by mapping each to a deformed c=1 theory called the sine-Liouville theory. We point out that the matrix theory in question may be naturally interpreted as a gauged quantum mechanics deformed by insertion of an exponentiated Wilson loop operator, which gives us more direct and holographic map between the two sides. The matrix model in the usual scaling limit must correspond to the bosonic SL(2,R)/U(1) theory in genus expansion but exact in α'. We successfully test this by computing the Wilson loop expectation value and comparing it against the bulk computation. For the latter, we employ the α'-exact geometry proposed by Dijkgraaf, Verlinde, and Verlinde, which was further advocated by Tseytlin. We close with comments on open problems. (author)

Diagrammatic technique for calculating matrix elements of collective operators in superradiance

International Nuclear Information System (INIS)

Lee, C.T.

1975-01-01

Adopting the so-called ''genealogical construction,'' one can express the eigenstates of collective operators corresponding to a specified mode for an N-atom system in terms of those for an (N-1) -atom system. Using these Dicke states as bases and using the Wigner-Eckart theorem, a matrix element of a collective operator of an arbitrary mode can be written as the product of an m-dependent factor and an m-independent reduced matrix element (RME). A set of recursion formulas for the RME is obtained. A graphical representation of the RME on the branching diagram for binary irreducible representations of permutation groups is then introduced. This gives a simple and systematic way of calculating the RME. This method is especially useful when the cooperation number r is close to N/2, where almost exact asymptotic expressions can be obtained easily. The result shows explicitly the geometry dependence of superradiance and the relative importance of r-conserving and r-nonconserving processes. This clears up the chief difficulty encountered in the Dicke-Schwendimann approach to the problem of N two-level atoms, spread over large regions, interacting with a multimode radiation field

Relation between the 2{nu}{beta}{beta} and 0{nu}{beta}{beta} nuclear matrix elements

Energy Technology Data Exchange (ETDEWEB)

Vogel, Petr [Kellogg Radiation Laboratory, Caltech, Pasadena, CA 91125 (United States); Simkovic, Fedor [Department of Nuclear Physics and Biophysics, Comenius University, Mlynska dolina F1, SK-84248 Bratislava (Slovakia)

2011-12-16

A formal relation between the GT part of the nuclear matrix elements M{sub GT}{sup 0{nu}} of 0{nu}{beta}{beta} decay and the closure matrix elements M{sub cl}{sup 2{nu}} of 2{nu}{beta}{beta} decay is established. This relation is based on the integral representation of these quantities in terms of their dependence on the distance r between the two nucleons undergoing transformation. We also discuss the difficulties in determining the correct values of the closure 2{nu}{beta}{beta} decay matrix elements.

Ceramic matrix composite article and process of fabricating a ceramic matrix composite article

Science.gov (United States)

Cairo, Ronald Robert; DiMascio, Paul Stephen; Parolini, Jason Robert

2016-01-12

A ceramic matrix composite article and a process of fabricating a ceramic matrix composite are disclosed. The ceramic matrix composite article includes a matrix distribution pattern formed by a manifold and ceramic matrix composite plies laid up on the matrix distribution pattern, includes the manifold, or a combination thereof. The manifold includes one or more matrix distribution channels operably connected to a delivery interface, the delivery interface configured for providing matrix material to one or more of the ceramic matrix composite plies. The process includes providing the manifold, forming the matrix distribution pattern by transporting the matrix material through the manifold, and contacting the ceramic matrix composite plies with the matrix material.

New aluminium-rich alkali slag matrix with clay minerals for immobilizing simulated radioactive Sr and Cs waste

International Nuclear Information System (INIS)

Qian Guangren; Sun, Darren Delai; Tay, Joo Hwa

2001-01-01

A new aluminium-rich alkali-activated slag matrix (M-AAS) with clay absorbents has been developed for immobilization of simulated radioactive Sr or Cs waste by introducing metakaolin, natural zeolite and NaOH-treated attapulgite clay minerals into alkali-activated slag matrix (AAS). The results revealed that the additions of metakaolin and clay absorbents into the cementitious matrixes would greatly enhance the distribution ratio, R d , of selective adsorption whether the matrix was OPC matrix or AAS matrix. The new immobilizing matrix M-AAS not only exhibited the strongest selective adsorption for both Sr and Cs ions, but also was characterized by lower porosity and small pore diameter so that it exhibited the lowest leaching rate. Hydration product analyses also demonstrated that (Na+Al)-substituted C-S-H(I) and self-generated zeolite were major hydration products in the M-AAS matrix, which provided this new immobilizing matrix with better selective adsorption on Sr and Cs and lower leaching rate

The determination of the Dirac density matrix of the d-dimensional harmonic oscillator for an arbitrary number of closed shells

International Nuclear Information System (INIS)

Howard, I.A.; March, N.H.; Nieto, L.M.

2002-01-01

In 1959, March and Young (Nucl. Phys. 12 237) rewrote the equation of motion for the Dirac density matrix γ(x, x 0 ) in terms of sum and difference variables. Here, γ(r-bar, r-bar 0 ) for the d-dimensional isotropic harmonic oscillator for an arbitrary number of closed shells is shown to satisfy, using the variables vertical bar r-bar + r-bar 0 vertical bar/2 and vertical bar r-bar - r-bar 0 vertical bar/2, a generalized partial differential equation embracing the March-Young equation for d=1. As applications, we take in turn the cases d=1, 2, 3 and 4, and obtain both the density matrix γ (r-bar, r-bar 0 ) and the diagonal density ρ(r)=γ(r-bar, r-bar 0 ) vertical bar r-bar 0 =r-bar, this diagonal element already being known to satisfy a third-order linear homogeneous differential equation for d=1 through 3. Some comments are finally made on the d-dimensional kinetic energy density, which is important for first-principles density functional theory in allowing one to bypass one-particle Schroedinger equations (the so-called Slater-Kohn-Sham equations). (author)

arXiv Supersymmetric gauged matrix models from dimensional reduction on a sphere

CERN Document Server

Closset, Cyril; Seong, Rak-Kyeong

2018-05-04

It was recently proposed that $ \\mathcal{N} $ = 1 supersymmetric gauged matrix models have a duality of order four — that is, a quadrality — reminiscent of infrared dualities of SQCD theories in higher dimensions. In this note, we show that the zero-dimensional quadrality proposal can be inferred from the two-dimensional Gadde-Gukov-Putrov triality. We consider two-dimensional $ \\mathcal{N} $ = (0, 2) SQCD compactified on a sphere with the half-topological twist. For a convenient choice of R-charge, the zero-mode sector on the sphere gives rise to a simple $ \\mathcal{N} $ = 1 gauged matrix model. Triality on the sphere then implies a triality relation for the supersymmetric matrix model, which can be completed to the full quadrality.

Cine e imperio tecnológico: de Blade Runner a Matrix

OpenAIRE

Gómez Tarín, Francisco Javier

2010-01-01

Las nuevas tecnologías digitales han disparado el fenómeno de los efectos especiales y cambiado significativamente la percepción espacio-temporal, fruto también de la moderna publicidad y las técnicas del vídeo-clip (acción inmediata, rápida, sin límite). Matrix (The Matrix), que realizan los hermanos LARRY Y ANDY WACHOWSKI en 1999, incorpora una trama argumental de indudable interés (confusión entre el mundo real y el virtual) y una brillante realización formal que responde en esencia a ese ...

Habitat or matrix: which is more relevant to predict road-kill of vertebrates?

OpenAIRE

Bueno,C.; Sousa,C. O. M.; Freitas,S. R.

2015-01-01

Abstract We believe that in tropics we need a community approach to evaluate road impacts on wildlife, and thus, suggest mitigation measures for groups of species instead a focal-species approach. Understanding which landscape characteristics indicate road-kill events may also provide models that can be applied in other regions. We intend to evaluate if habitat or matrix is more relevant to predict road-kill events for a group of species. Our hypothesis is: more permeable matrix is the most r...

Ceramic matrix and resin matrix composites - A comparison

Science.gov (United States)

Hurwitz, Frances I.

1987-01-01

The underlying theory of continuous fiber reinforcement of ceramic matrix and resin matrix composites, their fabrication, microstructure, physical and mechanical properties are contrasted. The growing use of organometallic polymers as precursors to ceramic matrices is discussed as a means of providing low temperature processing capability without the fiber degradation encountered with more conventional ceramic processing techniques. Examples of ceramic matrix composites derived from particulate-filled, high char yield polymers and silsesquioxane precursors are provided.

Ceramic matrix and resin matrix composites: A comparison

Science.gov (United States)

Hurwitz, Frances I.

1987-01-01

The underlying theory of continuous fiber reinforcement of ceramic matrix and resin matrix composites, their fabrication, microstructure, physical and mechanical properties are contrasted. The growing use of organometallic polymers as precursors to ceramic matrices is discussed as a means of providing low temperature processing capability without the fiber degradation encountered with more conventional ceramic processing techniques. Examples of ceramic matrix composites derived from particulate-filled, high char yield polymers and silsesquioxane precursors are provided.

The semiclassical S-matrix theory of three body Coulomb break-up

International Nuclear Information System (INIS)

Chocian, P.

1999-01-01

Using semiclassical methods we investigate the threshold behaviour for 3-particle break-up of a system with one particle of charge Z and two other particles of charge -q. For the particular case where the ratio of the charges of the third particle to the wing particles is Z/q = 1/4, the Wannier exponent for break-up diverges and it is found that the threshold law changes from a power law to an exponential law of the form exp(-λ/√E) which is in agreement with other results. Wannier's threshold theory is extended analytically to above threshold energies and it is found that the classical law for the divergent case is identical to an analytical result from the quantal hidden crossing theory. Corrections to the threshold behaviour for hydrogen from the above-threshold derivation are compared with those predicted by a calculation from hidden crossing theory. Excellent agreement is found which confirms the success of our classical derivation. The threshold behaviour is tested using semiclassical S-matrix theory above the region of divergence and it is found that for Z/q - of the initial states in S-matrix theory translates to a uniform distribution of outgoing trajectories on the boundary of the reaction zone. Observations of classical trajectories suggest that the radius of the reaction zone (R b ) is dependent on the total energy of the system. R b is determined numerically from ionization trajectories. When the dependence on R b is included in half-collision calculations, cross sections are produced which are in excellent agreement with full-collision S-matrix results for all values of Z > 0.25. (author)

Upregulation of miR-222 in both Helicobacter pylori-infected and ...

Indian Academy of Sciences (India)

MINA NOORMOHAMMAD

of this study was to analyse the expression level of miR-222 in gastric cancer tissues, evaluating the relationship between. miR-222 ... using RT-qPCR and compared with 88 healthy samples. ... observed in some diseases; for instance, hepatocellular carci- noma .... cellular matrix proteins in stomach cells (Chun-Zhi et al.

General transfer matrix formalism to calculate DNA-protein-drug binding in gene regulation: application to OR operator of phage lambda.

Science.gov (United States)

Teif, Vladimir B

2007-01-01

The transfer matrix methodology is proposed as a systematic tool for the statistical-mechanical description of DNA-protein-drug binding involved in gene regulation. We show that a genetic system of several cis-regulatory modules is calculable using this method, considering explicitly the site-overlapping, competitive, cooperative binding of regulatory proteins, their multilayer assembly and DNA looping. In the methodological section, the matrix models are solved for the basic types of short- and long-range interactions between DNA-bound proteins, drugs and nucleosomes. We apply the matrix method to gene regulation at the O(R) operator of phage lambda. The transfer matrix formalism allowed the description of the lambda-switch at a single-nucleotide resolution, taking into account the effects of a range of inter-protein distances. Our calculations confirm previously established roles of the contact CI-Cro-RNAP interactions. Concerning long-range interactions, we show that while the DNA loop between the O(R) and O(L) operators is important at the lysogenic CI concentrations, the interference between the adjacent promoters P(R) and P(RM) becomes more important at small CI concentrations. A large change in the expression pattern may arise in this regime due to anticooperative interactions between DNA-bound RNA polymerases. The applicability of the matrix method to more complex systems is discussed.

AMP-Activated Protein Kinase Alleviates Extracellular Matrix Accumulation in High Glucose-Induced Renal Fibroblasts through mTOR Signaling Pathway

Directory of Open Access Journals (Sweden)

Xia Luo

2015-01-01

Full Text Available Background/Aims: Extracellular matrix accumulation contributes significantly to the pathogenesis of diabetic nephropathy. Although AMP-activated protein kinase (AMPK has been found to inhibit extracellular matrix synthesis by experiments in vivo and vitro, its role in alleviating the deposition of extracellular matrix in renal interstitial fibroblasts has not been well defined. Methods: Currently, we conducted this study to investigate the effects of AMPK on high glucose-induced extracellular matrix synthesis and involved intracellular signaling pathway by using western blot in the kidney fibroblast cell line (NRK-49f. Results: Collagen IV protein levels were significantly increased by high glucose in a time-dependent manner. This was associated with a decrease in Thr72 phosphorylation of AMPK and an increase in phosphorylation of mTOR on Ser2448. High glucose-induced extracellular matrix accumulation and mTOR activation were significantly inhibited by the co-treatment of rAAV-AMPKα1312 (encoding constitutively active AMPKα1 whereas activated by r-AAV-AMPKα1D157A (encoding dominant negative AMPKα1. In cultured renal fibroblasts, overexpression of AMPKα1D157A upregulated mTOR signaling and matrix synthesis, which were ameliorated by co-treatment with the inhibitor of mTOR, rapamycin. Conclusion: Collectively, these findings indicate that AMPK exerts renoprotective effects by inhibiting the accumulation of extracellular matrix through mTOR signaling pathway.

PULLOUT BEHAVIOR OF OXYGEN PLASMA TREATED POLYMER FIBERS FROM CEMENT MATRIX

Directory of Open Access Journals (Sweden)

Jan Trejbal

2017-11-01

Full Text Available The aim of this work is to describe bonding properties between surface treated polymer fibers and a cement matrix. In order to increase an interaction between the matrix and fiber surfaces, two fiber types having approx. 0.5 mm in diameter were modified by mean of oxygen plasma treatment. Surface physical changes of treated fibers were examined using SEM morphology observation and interfacial adhesion mechanical tests. The principle of mechanical tests rested on a single fiber pulling out from the matrix (cement paste, CEM I 42.5 R, w/c 0.4. The embedded length was equal to 50 % of original fiber length (50 mm, where the fiber free-end displacement and force resisting to the displacement were monitored. It was pointed out that interfacial shear stress needed to break the bond between the modified fibers and the matrix increased almost by 15–65 % if compared to reference fibers. When the fiber free-end displacement reached to 3.5 mm, the shear strength increased almost twice.

Extended biorthogonal matrix polynomials

Directory of Open Access Journals (Sweden)

Ayman Shehata

2017-01-01

Full Text Available The pair of biorthogonal matrix polynomials for commutative matrices were first introduced by Varma and Tasdelen in [22]. The main aim of this paper is to extend the properties of the pair of biorthogonal matrix polynomials of Varma and Tasdelen and certain generating matrix functions, finite series, some matrix recurrence relations, several important properties of matrix differential recurrence relations, biorthogonality relations and matrix differential equation for the pair of biorthogonal matrix polynomials J(A,B n (x, k and K(A,B n (x, k are discussed. For the matrix polynomials J(A,B n (x, k, various families of bilinear and bilateral generating matrix functions are constructed in the sequel.

Analytical Model of Water Flow in Coal with Active Matrix

Science.gov (United States)

Siemek, Jakub; Stopa, Jerzy

2014-12-01

This paper presents new analytical model of gas-water flow in coal seams in one dimension with emphasis on interactions between water flowing in cleats and coal matrix. Coal as a flowing system, can be viewed as a solid organic material consisting of two flow subsystems: a microporous matrix and a system of interconnected macropores and fractures. Most of gas is accumulated in the microporous matrix, where the primary flow mechanism is diffusion. Fractures and cleats existing in coal play an important role as a transportation system for macro scale flow of water and gas governed by Darcy's law. The coal matrix can imbibe water under capillary forces leading to exchange of mass between fractures and coal matrix. In this paper new partial differential equation for water saturation in fractures has been formulated, respecting mass exchange between coal matrix and fractures. Exact analytical solution has been obtained using the method of characteristics. The final solution has very simple form that may be useful for practical engineering calculations. It was observed that the rate of exchange of mass between the fractures and the coal matrix is governed by an expression which is analogous to the Newton cooling law known from theory of heat exchange, but in present case the mass transfer coefficient depends not only on coal and fluid properties but also on time and position. The constant term of mass transfer coefficient depends on relation between micro porosity and macro porosity of coal, capillary forces, and microporous structure of coal matrix. This term can be expressed theoretically or obtained experimentally. W artykule zaprezentowano nowy model matematyczny przepływu wody i gazu w jednowymiarowej warstwie węglowej z uwzględnieniem wymiany masy między systemem szczelin i matrycą węglową. Węgiel jako system przepływowy traktowany jest jako układ o podwójnej porowatości i przepuszczalności, składający się z mikroporowatej matrycy węglowej oraz z

Cross-linking in collagen by nonenzymatic glycation increases the matrix stiffness in rabbit achilles tendon.

Science.gov (United States)

Reddy, G Kesava

2004-01-01

Nonenzymatic glycation of connective tissue matrix proteins is a major contributor to the pathology of diabetes and aging. Previously the author and colleagues have shown that nonenzymatic glycation significantly enhances the matrix stability in the Achilles tendon (Reddy et al., 2002, Arch. Biochem. Biophys., 399, 174-180). The present study was designed to gain further insight into glycation-induced collagen cross-linking and its relationship to matrix stiffness in the rabbit Achilles tendon. The glycation process was initiated by incubating the Achilles tendons (n = 6) in phosphate-buffered saline containing ribose, whereas control tendons (n = 6) were incubated in phosphate-buffered saline without ribose. Eight weeks following glycation, the biomechanical attributes as well as the degree of collagen cross-linking were determined to examine the potential associations between matrix stiffness and molecular properties of collagen. Compared to nonglycated tendons, the glycated tendons showed increased maximum load, stress, strain, Young's modulus of elasticity, and toughness indicating that glycation increases the matrix stiffness in the tendons. Glycation of tendons resulted in a considerable decrease in soluble collagen content and a significant increase in insoluble collagen and pentosidine. Analysis of potential associations between the matrix stiffness and degree of collagen cross-linking showed that both insoluble collagen and pentosidine exhibited a significant positive correlation with the maximum load, stress, and strain, Young's modulus of elasticity, and toughness (r values ranging from.61 to.94) in the Achilles tendons. However, the soluble collagen content present in neutral salt buffer, acetate buffer, and acetate buffer containing pepsin showed an inverse relation with the various biomechanical attributes tested (r values ranging from.22 to.84) in the Achilles tendons. The results of the study demonstrate that glycation-induced collagen cross

M(atrix) theory: matrix quantum mechanics as a fundamental theory

International Nuclear Information System (INIS)

Taylor, Washington

2001-01-01

This article reviews the matrix model of M theory. M theory is an 11-dimensional quantum theory of gravity that is believed to underlie all superstring theories. M theory is currently the most plausible candidate for a theory of fundamental physics which reconciles gravity and quantum field theory in a realistic fashion. Evidence for M theory is still only circumstantial -- no complete background-independent formulation of the theory exists as yet. Matrix theory was first developed as a regularized theory of a supersymmetric quantum membrane. More recently, it has appeared in a different guise as the discrete light-cone quantization of M theory in flat space. These two approaches to matrix theory are described in detail and compared. It is shown that matrix theory is a well-defined quantum theory that reduces to a supersymmetric theory of gravity at low energies. Although its fundamental degrees of freedom are essentially pointlike, higher-dimensional fluctuating objects (branes) arise through the non-Abelian structure of the matrix degrees of freedom. The problem of formulating matrix theory in a general space-time background is discussed, and the connections between matrix theory and other related models are reviewed

Reduction of multipartite qubit density matrixes to bipartite qubit density matrixes and criteria of partial separability of multipartite qubit density matrixes

OpenAIRE

Zhong, Zai-Zhe

2004-01-01

The partial separability of multipartite qubit density matrixes is strictly defined. We give a reduction way from N-partite qubit density matrixes to bipartite qubit density matrixes, and prove a necessary condition that a N-partite qubit density matrix to be partially separable is its reduced density matrix to satisfy PPT condition.

Adiabatic potential-energy curves of long-range Rydberg molecules: Two-electron R -matrix approach

Czech Academy of Sciences Publication Activity Database

Tarana, Michal; Čurík, Roman

2016-01-01

Roč. 93, č. 1 (2016), 012515 ISSN 0556-2791 R&D Projects: GA ČR(CZ) GP14-15989P Institutional support: RVO:61388955 Keywords : adiabatic-potential- energy curves * Rydberg molecules * theoretical chemistry Subject RIV: CF - Physical ; Theoretical Chemistry

Adiabatic potential-energy curves of long-range Rydberg molecules: Two-electron R -matrix approach

Czech Academy of Sciences Publication Activity Database

Tarana, Michal; Čurík, Roman

2016-01-01

Roč. 93, č. 1 (2016), 012515 ISSN 0556-2791 R&D Projects: GA ČR(CZ) GP14-15989P Institutional support: RVO:61388955 Keywords : adiabatic-potential-energy curves * Rydberg molecules * theoretical chemistry Subject RIV: CF - Physical ; Theoretical Chemistry

Monotonicity of the von Neumann entropy expressed as a function of R\\'enyi entropies

OpenAIRE

Fannes, Mark

2013-01-01

The von Neumann entropy of a density matrix of dimension d, expressed in terms of the first d-1 integer order R\\'enyi entropies, is monotonically increasing in R\\'enyi entropies of even order and decreasing in those of odd order.

Random Matrix Theory and Econophysics

Science.gov (United States)

Rosenow, Bernd

2000-03-01

Random Matrix Theory (RMT) [1] is used in many branches of physics as a ``zero information hypothesis''. It describes generic behavior of different classes of systems, while deviations from its universal predictions allow to identify system specific properties. We use methods of RMT to analyze the cross-correlation matrix C of stock price changes [2] of the largest 1000 US companies. In addition to its scientific interest, the study of correlations between the returns of different stocks is also of practical relevance in quantifying the risk of a given stock portfolio. We find [3,4] that the statistics of most of the eigenvalues of the spectrum of C agree with the predictions of RMT, while there are deviations for some of the largest eigenvalues. We interpret these deviations as a system specific property, e.g. containing genuine information about correlations in the stock market. We demonstrate that C shares universal properties with the Gaussian orthogonal ensemble of random matrices. Furthermore, we analyze the eigenvectors of C through their inverse participation ratio and find eigenvectors with large ratios at both edges of the eigenvalue spectrum - a situation reminiscent of localization theory results. This work was done in collaboration with V. Plerou, P. Gopikrishnan, T. Guhr, L.A.N. Amaral, and H.E Stanley and is related to recent work of Laloux et al.. 1. T. Guhr, A. Müller Groeling, and H.A. Weidenmüller, ``Random Matrix Theories in Quantum Physics: Common Concepts'', Phys. Rep. 299, 190 (1998). 2. See, e.g. R.N. Mantegna and H.E. Stanley, Econophysics: Correlations and Complexity in Finance (Cambridge University Press, Cambridge, England, 1999). 3. V. Plerou, P. Gopikrishnan, B. Rosenow, L.A.N. Amaral, and H.E. Stanley, ``Universal and Nonuniversal Properties of Cross Correlations in Financial Time Series'', Phys. Rev. Lett. 83, 1471 (1999). 4. V. Plerou, P. Gopikrishnan, T. Guhr, B. Rosenow, L.A.N. Amaral, and H.E. Stanley, ``Random Matrix Theory

Serum matrix metalloproteinase-9 and tissue inhibitor of metalloproteinase-1 levels in patients with tick-borne encephalitis

Czech Academy of Sciences Publication Activity Database

Palus, Martin; Žampachová, E.; Elsterová, Jana; Růžek, Daniel

2014-01-01

Roč. 68, č. 2 (2014), s. 165-169 ISSN 0163-4453 R&D Projects: GA ČR GAP502/11/2116 Institutional support: RVO:60077344 Keywords : tick-borne encephalitis * matrix metalloproteinase-9 * tissue inhibitor of metalloproteinase-1 * bloodebrain barrier Subject RIV: EC - Immunology Impact factor: 4.441, year: 2014

Nonlinear behavior of matrix-inclusion composites under high confining pressure: application to concrete and mortar

Science.gov (United States)

Le, Tuan Hung; Dormieux, Luc; Jeannin, Laurent; Burlion, Nicolas; Barthélémy, Jean-François

2008-08-01

This paper is devoted to a micromechanics-based simulation of the response of concrete to hydrostatic and oedometric compressions. Concrete is described as a composite made up of a cement matrix in which rigid inclusions are embedded. The focus is put on the role of the interface between matrix and inclusion which represent the interfacial transition zone (ITZ). A plastic behavior is considered for both the matrix and the interfaces. The effective response of the composite is derived from the modified secant method adapted to the situation of imperfect interfaces. To cite this article: T.H. Le et al., C. R. Mecanique 336 (2008).

Center type performance of differentiable vector fields in R2

International Nuclear Information System (INIS)

Rabanal, Roland

2007-08-01

Let X : R 2 / D → R 2 be a differentiable vector field, where D is compact. If the eigenvalues of the jacobian matrix DX z are (nonzero) purely imaginary, for all z element of R 2 / D . Then, X + v has a center type performance at infinity, for some v element of R 2 . More precisely, X + v has a periodic trajectory Γ subset of R2/ D which is surrounding D such that in the unbounded component of (R 2 / D )/ Γ all the trajectories of X + v are nontrivial cycles. In the case of global vector fields Y : R 2 → R 2 with Y (0) = 0, we prove that such eigenvalue condition implies the topological equivalency of Y with the linear vector field (x, y) → (-y, x). (author)

Positron collisions with acetylene calculated using the R-matrix with pseudo-states method

Science.gov (United States)

Zhang, Rui; Galiatsatos, Pavlos G.; Tennyson, Jonathan

2011-10-01

Eigenphase sums, total cross sections and differential cross sections are calculated for low-energy collisions of positrons with C2H2. The calculations demonstrate that the use of appropriate pseudo-state expansions very significantly improves the representation of this process giving both realistic eigenphases and cross sections. Differential cross sections are strongly forward peaked in agreement with the measurements. These calculations are computationally very demanding; even with improved procedures for matrix diagonalization, fully converged calculations are too expensive with current computer resources. Nonetheless, the calculations show clear evidence for the formation of a virtual state but no indication that acetylene actually binds a positron at its equilibrium geometry.

Positron collisions with acetylene calculated using the R-matrix with pseudo-states method

Energy Technology Data Exchange (ETDEWEB)

Zhang Rui; Galiatsatos, Pavlos G; Tennyson, Jonathan, E-mail: j.tennyson@ucl.ac.uk [Department of Physics and Astronomy, University College London, Gower St., London WC1E 6BT (United Kingdom)

2011-10-14

Eigenphase sums, total cross sections and differential cross sections are calculated for low-energy collisions of positrons with C{sub 2}H{sub 2}. The calculations demonstrate that the use of appropriate pseudo-state expansions very significantly improves the representation of this process giving both realistic eigenphases and cross sections. Differential cross sections are strongly forward peaked in agreement with the measurements. These calculations are computationally very demanding; even with improved procedures for matrix diagonalization, fully converged calculations are too expensive with current computer resources. Nonetheless, the calculations show clear evidence for the formation of a virtual state but no indication that acetylene actually binds a positron at its equilibrium geometry.

Matrix theory

CERN Document Server

Franklin, Joel N

2003-01-01

Mathematically rigorous introduction covers vector and matrix norms, the condition-number of a matrix, positive and irreducible matrices, much more. Only elementary algebra and calculus required. Includes problem-solving exercises. 1968 edition.

Effect of clustering on the mechanical properties of SiC particulate-reinforced aluminum alloy 2024 metal matrix composites

International Nuclear Information System (INIS)

Hong, Soon-Jik; Kim, Hong-Moule; Huh, Dae; Suryanarayana, C.; Chun, Byong Sun

2003-01-01

Al 2024-SiC metal matrix composite (MMC) powders produced by centrifugal atomization were hot extruded to investigate the effect of clustering on their mechanical properties. Fracture toughness and tension tests were conducted on specimens reinforced with different volume fractions of SiC. A model was proposed to suggest that the strength of the MMCs could be estimated from the load transfer model approach that takes into consideration the extent of clustering. This model has been successful in predicting the experimentally observed strength and fracture toughness values of the Al 2024-SiC MMCs. On the basis of experimental observations, it is suggested that the strength of particulate-reinforced MMCs may be calculated from the relation: σ y =σ m V m +σ r (V r -V c )-σ r V c , where σ and V represent the yield strength and volume fraction, respectively, and the subscripts m, r, and c represent the matrix, reinforcement, and clusters, respectively

Fuzzy vulnerability matrix

International Nuclear Information System (INIS)

Baron, Jorge H.; Rivera, S.S.

2000-01-01

The so-called vulnerability matrix is used in the evaluation part of the probabilistic safety assessment for a nuclear power plant, during the containment event trees calculations. This matrix is established from what is knows as Numerical Categories for Engineering Judgement. This matrix is usually established with numerical values obtained with traditional arithmetic using the set theory. The representation of this matrix with fuzzy numbers is much more adequate, due to the fact that the Numerical Categories for Engineering Judgement are better represented with linguistic variables, such as 'highly probable', 'probable', 'impossible', etc. In the present paper a methodology to obtain a Fuzzy Vulnerability Matrix is presented, starting from the recommendations on the Numerical Categories for Engineering Judgement. (author)

Green's matrix for a second-order self-adjoint matrix differential operator

International Nuclear Information System (INIS)

Sisman, Tahsin Cagri; Tekin, Bayram

2010-01-01

A systematic construction of the Green's matrix for a second-order self-adjoint matrix differential operator from the linearly independent solutions of the corresponding homogeneous differential equation set is carried out. We follow the general approach of extracting the Green's matrix from the Green's matrix of the corresponding first-order system. This construction is required in the cases where the differential equation set cannot be turned to an algebraic equation set via transform techniques.

Binding of matrix metalloproteinase inhibitors to extracellular matrix: 3D-QSAR analysis.

Science.gov (United States)

Zhang, Yufen; Lukacova, Viera; Bartus, Vladimir; Nie, Xiaoping; Sun, Guorong; Manivannan, Ethirajan; Ghorpade, Sandeep R; Jin, Xiaomin; Manyem, Shankar; Sibi, Mukund P; Cook, Gregory R; Balaz, Stefan

2008-10-01

Binding to the extracellular matrix, one of the most abundant human protein complexes, significantly affects drug disposition. Specifically, the interactions with extracellular matrix determine the free concentrations of small molecules acting in tissues, including signaling peptides, inhibitors of tissue remodeling enzymes such as matrix metalloproteinases, and other drug candidates. The nature of extracellular matrix binding was elucidated for 63 matrix metalloproteinase inhibitors, for which the association constants to an extracellular matrix mimic were reported here. The data did not correlate with lipophilicity as a common determinant of structure-nonspecific, orientation-averaged binding. A hypothetical structure of the binding site of the solidified extracellular matrix surrogate was analyzed using the Comparative Molecular Field Analysis, which needed to be applied in our multi-mode variant. This fact indicates that the compounds bind to extracellular matrix in multiple modes, which cannot be considered as completely orientation-averaged and exhibit structural dependence. The novel comparative molecular field analysis models, exhibiting satisfactory descriptive and predictive abilities, are suitable for prediction of the extracellular matrix binding for the untested chemicals, which are within applicability domains. The results contribute to a better prediction of the pharmacokinetic parameters such as the distribution volume and the tissue-blood partition coefficients, in addition to a more imminent benefit for the development of more effective matrix metalloproteinase inhibitors.

Kinetic-energy matrix elements for atomic Hylleraas-CI wave functions

Energy Technology Data Exchange (ETDEWEB)

Harris, Frank E., E-mail: harris@qtp.ufl.edu [Department of Physics, University of Utah, Salt Lake City, Utah 84112, USA and Quantum Theory Project, University of Florida, P.O. Box 118435, Gainesville, Florida 32611 (United States)

2016-05-28

Hylleraas-CI is a superposition-of-configurations method in which each configuration is constructed from a Slater-type orbital (STO) product to which is appended (linearly) at most one interelectron distance r{sub ij}. Computations of the kinetic energy for atoms by this method have been difficult due to the lack of formulas expressing these matrix elements for general angular momentum in terms of overlap and potential-energy integrals. It is shown here that a strategic application of angular-momentum theory, including the use of vector spherical harmonics, enables the reduction of all atomic kinetic-energy integrals to overlap and potential-energy matrix elements. The new formulas are validated by showing that they yield correct results for a large number of integrals published by other investigators.

Explicit solutions of the cubic matrix nonlinear Schrödinger equation

International Nuclear Information System (INIS)

Demontis, Francesco; Mee, Cornelis van der

2008-01-01

In this paper, we derive a class of explicit solutions, global in (x, t) is an element of R 2 , of the focusing matrix nonlinear Schrödinger equation using straightforward linear algebra. We obtain both the usual and multiple pole multisoliton solutions as well as a new class of solutions exponentially decaying as x → ±∞

Experimental investigation of copper matrix longitudinal resistance in a composite Nb-Ti wire

International Nuclear Information System (INIS)

Gubkin, I.N.; Kozlenkova, N.I.; Nikulin, A.D.; Polikarpova, M.V.; Filkin, V.Ya.

1994-01-01

The longitudinal resistance of multifilamentary superconducting wires is among the major parameters used in design and optimization of superconducting magnetic systems. To enhance the conductivity of the copper matrix, it is made of pipes and rods of enhanced quality copper produced by electron beam melting (resistance ratio between two temperatures, 295 K and 4.2 K, R 295 /R 4.2 > 200). Yet for readily obtainable conductors this parameter is much lower. The reduction of the copper-matrix electrical conductivity may be attributed to wire-production technology involving processes such as extrusion, drawing and intermediate thermal processing, as well as to the size effect. Copper-matrix longitudinal resistance was studied as a function of wire diameter on specimens of multifilamentary Nb-Ti wire with filaments coated by a Nb layer. Experimental results are compared with the Sondheimer calculations for a monofilament conductor as well as with the Gavalloni calculations for an ideal wire with hexagonally located filaments. It has been shown that the best fit with the experiment is provided by the Sondheimer approximation. Comparison of the results of this work with other authors' data obtained for the specimens with no niobium barrier, allows the authors to single out the influence of a pure size effect and diffusion of Ti on the resistivity

A control volume scheme for three-dimensional transport: buffer and matrix effect on a decay chain transport in the repository

International Nuclear Information System (INIS)

Lee, Y. M.; Hwang, Y. S.; Kim, S. G.; Kang, C. H.

2002-01-01

Using a three-dimensional numerical code, B3R developed for nuclide transport of an arbitrary length of decay chain in the buffer between the canister and adjacent rock in a high-level radioactive waste repository by adopting a finite difference method utilizing the control-volume scheme, some illustrative calculations have been done. A linear sorption isotherm, nuclide transport due to diffusion in the buffer and the rock matrix, and advection and dispersion along thin rigid parallel fractures existing in a saturated porous rock matrix as well as diffusion through the fracture wall into the matrix is assumed. In such kind of repository, buffer and rock matrix are known to be important physico-chemical barriers in nuclide retardation. To show effects of buffer and rock matrix on nuclide transport in HLW repository and also to demonstrate usefulness of B3R, several cases of breakthrough curves as well as three-dimensional plots of concentration isopleths associated with these two barriers are introduced for a typical case of decay chain of 234 U→ 230 Th→ 226 Ra, which is the most important chain as far as the human environment is concerned

Matrix calculus

CERN Document Server

Bodewig, E

1959-01-01

Matrix Calculus, Second Revised and Enlarged Edition focuses on systematic calculation with the building blocks of a matrix and rows and columns, shunning the use of individual elements. The publication first offers information on vectors, matrices, further applications, measures of the magnitude of a matrix, and forms. The text then examines eigenvalues and exact solutions, including the characteristic equation, eigenrows, extremum properties of the eigenvalues, bounds for the eigenvalues, elementary divisors, and bounds for the determinant. The text ponders on approximate solutions, as well

Neutrino mass matrix

International Nuclear Information System (INIS)

Strobel, E.L.

1985-01-01

Given the many conflicting experimental results, examination is made of the neutrino mass matrix in order to determine possible masses and mixings. It is assumed that the Dirac mass matrix for the electron, muon, and tau neutrinos is similar in form to those of the quarks and charged leptons, and that the smallness of the observed neutrino masses results from the Gell-Mann-Ramond-Slansky mechanism. Analysis of masses and mixings for the neutrinos is performed using general structures for the Majorana mass matrix. It is shown that if certain tentative experimental results concerning the neutrino masses and mixing angles are confirmed, significant limitations may be placed on the Majorana mass matrix. The most satisfactory simple assumption concerning the Majorana mass matrix is that it is approximately proportional to the Dirac mass matrix. A very recent experimental neutrino mass result and its implications are discussed. Some general properties of matrices with structure similar to the Dirac mass matrices are discussed

STUDYING THE SECONDARY STRUCTURE OF ACCESSION NUMBER USING CETD MATRIX

Directory of Open Access Journals (Sweden)

Anamika Dutta

2016-10-01

Full Text Available This paper, we have tried to analyze about the Secondary Structure of nucleotide sequences of rice. The data have been collected from NCBI (National Centre for Biotechnology Information using Nucleotide as data base. All the programs were developed using R programming language using “sequinr” package. Here, we have used CETD matrix method to study the prediction. The conclusions are drawn accordingly.

Dynamical R Matrices of Elliptic Quantum Groups and Connection Matrices for the q-KZ Equations

Directory of Open Access Journals (Sweden)

Hitoshi Konno

2006-12-01

Full Text Available For any affine Lie algebra ${mathfrak g}$, we show that any finite dimensional representation of the universal dynamical $R$ matrix ${cal R}(lambda$ of the elliptic quantum group ${cal B}_{q,lambda}({mathfrak g}$ coincides with a corresponding connection matrix for the solutions of the $q$-KZ equation associated with $U_q({mathfrak g}$. This provides a general connection between ${cal B}_{q,lambda}({mathfrak g}$ and the elliptic face (IRF or SOS models. In particular, we construct vector representations of ${cal R}(lambda$ for ${mathfrak g}=A_n^{(1}$, $B_n^{(1}$, $C_n^{(1}$, $D_n^{(1}$, and show that they coincide with the face weights derived by Jimbo, Miwa and Okado. We hence confirm the conjecture by Frenkel and Reshetikhin.

Periodic matrix population models: growth rate, basic reproduction number, and entropy.

Science.gov (United States)

Bacaër, Nicolas

2009-10-01

This article considers three different aspects of periodic matrix population models. First, a formula for the sensitivity analysis of the growth rate lambda is obtained that is simpler than the one obtained by Caswell and Trevisan. Secondly, the formula for the basic reproduction number R0 in a constant environment is generalized to the case of a periodic environment. Some inequalities between lambda and R0 proved by Cushing and Zhou are also generalized to the periodic case. Finally, we add some remarks on Demetrius' notion of evolutionary entropy H and its relationship to the growth rate lambda in the periodic case.

Sparse matrix-vector multiplication on GPGPU clusters: A new storage format and a scalable implementation

OpenAIRE

Kreutzer, Moritz; Hager, Georg; Wellein, Gerhard; Fehske, Holger; Basermann, Achim; Bishop, Alan R.

2011-01-01

Sparse matrix-vector multiplication (spMVM) is the dominant operation in many sparse solvers. We investigate performance properties of spMVM with matrices of various sparsity patterns on the nVidia “Fermi” class of GPGPUs. A new “padded jagged diagonals storage” (pJDS) format is proposed which may substantially reduce the memory overhead intrinsic to the widespread ELLPACK-R scheme while making no assumptions about the matrix structure. In our test scenarios the pJDS format cuts the ...

Fuzzy risk matrix

International Nuclear Information System (INIS)

Markowski, Adam S.; Mannan, M. Sam

2008-01-01

A risk matrix is a mechanism to characterize and rank process risks that are typically identified through one or more multifunctional reviews (e.g., process hazard analysis, audits, or incident investigation). This paper describes a procedure for developing a fuzzy risk matrix that may be used for emerging fuzzy logic applications in different safety analyses (e.g., LOPA). The fuzzification of frequency and severity of the consequences of the incident scenario are described which are basic inputs for fuzzy risk matrix. Subsequently using different design of risk matrix, fuzzy rules are established enabling the development of fuzzy risk matrices. Three types of fuzzy risk matrix have been developed (low-cost, standard, and high-cost), and using a distillation column case study, the effect of the design on final defuzzified risk index is demonstrated

Effect of oxidation at elevated temperature on elastic and interface properties of ceramic matrix composites

Czech Academy of Sciences Publication Activity Database

Brandstetter, J.; Glogar, Petr; Loidl, D.; Kromp, K.

2005-01-01

Roč. 290, - (2005), s. 340-343 ISSN 1013-9826. [International conference on fractography of advanced ceramics /2./. Stará Lesná, 03.10.2005-06.10.2005] R&D Projects: GA AV ČR(CZ) KSK2067107 Institutional research plan: CEZ:AV0Z30460519 Keywords : polysiloxane * ceramic matrix composite * shear modulus Subject RIV: JH - Ceramics, Fire-Resistant Materials and Glass Impact factor: 0.224, year: 2005

Molecular dynamics simulations of matrix assisted laser desorption ionization: Matrix-analyte interactions

International Nuclear Information System (INIS)

Nangia, Shivangi; Garrison, Barbara J.

2011-01-01

There is synergy between matrix assisted laser desorption ionization (MALDI) experiments and molecular dynamics (MD) simulations. To understand analyte ejection from the matrix, MD simulations have been employed. Prior calculations show that the ejected analyte molecules remain solvated by the matrix molecules in the ablated plume. In contrast, the experimental data show free analyte ions. The main idea of this work is that analyte molecule ejection may depend on the microscopic details of analyte interaction with the matrix. Intermolecular matrix-analyte interactions have been studied by focusing on 2,5-dihydroxybenzoic acid (DHB; matrix) and amino acids (AA; analyte) using Chemistry at HARvard Molecular Mechanics (CHARMM) force field. A series of AA molecules have been studied to analyze the DHB-AA interaction. A relative scale of AA molecule affinity towards DHB has been developed.

Carbon fibre reinforced copper matrix composites: processing routes and properties

Energy Technology Data Exchange (ETDEWEB)

Le Petitcorps, Y. [Bordeaux-1 Univ., 33 - Pessac (France). ICMCB; Poueylaud, J.M. [Bordeaux-1 Univ., 33 - Pessac (France). ICMCB; Albingre, L. [Bordeaux-1 Univ., 33 - Pessac (France). ICMCB; Berdeu, B. [L`Electrolyse, 33 - Latresne (France); Lobstein, P. [L`Electrolyse, 33 - Latresne (France); Silvain, J.F. [Bordeaux-1 Univ., 33 - Pessac (France). ICMCB

1997-06-01

Copper matrix composites are of interest for applications in the electronic field which requires materials with high thermal conductivity properties. The use of carbon fibres can (1) decrease the density and the coefficient of thermal expansion of the material and (2) increase the stiffness and strength to rupture of the resulting composite. In order to produce cheap materials, chemical plating and uniaxial hot pressing processing routes were chosen. 1D-C{sub (P55Thornel)} / Cu prepregs were hot pressed in an argon atmosphere at 750 C during 30 min. The volume fraction of the fibres within the composite was in the range of 10-35%. Physical (density and thermal expansion coefficient) and thermal conductivity properties of the composite were in good agreement with the predictions. However this material exhibits very poor mechanical properties (Young`s modulus and tensile strength). Scanning electron microscopy (SEM) observations of the surfaces of ruptures have shown that (1) a very weak bonding between the graphite fibres and the copper matrix was formed and (2) the rupture of the composite was initiated in the matrix at the copper grain boundaries. In order to overcome these two difficulties, the carbon fibres were pre-coated with a thin layer (100 nm) of cobalt. The aim of the cobalt was to react with the carbon to form carbide compounds and as a consequence to increase the bonding between the metal and the fibre. The tensile properties ({sigma}{sub c}{sup R} and E{sub c}) of this composite were then increased by 50% in comparison with the former material; however the strain to rupture was still too weak ({epsilon}{sub c}{sup R} = 0.5%). In order to explain the role of each constituents, X-ray profiles and TEM analyses were done at the fibre/matrix interface and at the grain boundaries. Some modifications of the chemical plating steps were done to improve the purity of the copper. (orig.)

Thermal and mechanical behavior of metal matrix and ceramic matrix composites

Science.gov (United States)

Kennedy, John M. (Editor); Moeller, Helen H. (Editor); Johnson, W. S. (Editor)

1990-01-01

The present conference discusses local stresses in metal-matrix composites (MMCs) subjected to thermal and mechanical loads, the computational simulation of high-temperature MMCs' cyclic behavior, an analysis of a ceramic-matrix composite (CMC) flexure specimen, and a plasticity analysis of fibrous composite laminates under thermomechanical loads. Also discussed are a comparison of methods for determining the fiber-matrix interface frictional stresses of CMCs, the monotonic and cyclic behavior of an SiC/calcium aluminosilicate CMC, the mechanical and thermal properties of an SiC particle-reinforced Al alloy MMC, the temperature-dependent tensile and shear response of a graphite-reinforced 6061 Al-alloy MMC, the fiber/matrix interface bonding strength of MMCs, and fatigue crack growth in an Al2O3 short fiber-reinforced Al-2Mg matrix MMC.

Study of ionization process of matrix molecules in matrix-assisted laser desorption ionization

Energy Technology Data Exchange (ETDEWEB)

Murakami, Kazumasa; Sato, Asami; Hashimoto, Kenro; Fujino, Tatsuya, E-mail: fujino@tmu.ac.jp

2013-06-20

Highlights: ► Proton transfer and adduction reaction of matrix in MALDI were studied. ► Hydroxyl group forming intramolecular hydrogen bond was related to the ionization. ► Intramolecular proton transfer in the electronic excited state was the initial step. ► Non-volatile analytes stabilized protonated matrix in the ground state. ► A possible mechanism, “analyte support mechanism”, has been proposed. - Abstract: Proton transfer and adduction reaction of matrix molecules in matrix-assisted laser desorption ionization were studied. By using 2,4,6-trihydroxyacetophenone (THAP), 2,5-dihydroxybenzoic acid (DHBA), and their related compounds in which the position of a hydroxyl group is different, it was clarified that a hydroxyl group forming an intramolecular hydrogen bond is related to the ionization of matrix molecules. Intramolecular proton transfer in the electronic excited state of the matrix and subsequent proton adduction from a surrounding solvent to the charge-separated matrix are the initial steps for the ionization of matrix molecules. Nanosecond pump–probe NIR–UV mass spectrometry confirmed that the existence of analyte molecules having large dipole moment in their structures is necessary for the stabilization of [matrix + H]{sup +} in the electronic ground state.

Investigation of metal-matrix composite containing liquid-phase dispersion

Czech Academy of Sciences Publication Activity Database

Strunz, Pavel; Mukherji, D.; Gilles, R.; Geue, T.; Rösler, J.

2012-01-01

Roč. 340, 012098 (2012), s. 1-15 ISSN 1742-6588. [5th European Conference on Neutron Scattering. Praha, 17.07.2011-21.07.2011] R&D Projects: GA MPO FR-TI1/378 Grant - others:European Commission(XE) RII3-CT-2003-505925 Program:FP6 Institutional support: RVO:61389005 Keywords : metal-matrix composite * liquid-phase dispersion * strengthening * neutron diffraction Subject RIV: BM - Solid Matter Physics ; Magnetism http://iopscience.iop.org/1742-6596/340/1/012098

Progress in the characterisation of structural oxide/oxide ceramic matrix composites fabricated by electrophoretic deposition (EPD)

Czech Academy of Sciences Publication Activity Database

Stoll, E.; Mahr, P.; Kruger, H. G.; Kern, H.; Dlouhý, Ivo; Boccaccini, A. R.

2006-01-01

Roč. 8, č. 4 (2006), s. 282-285 ISSN 1438-1656 R&D Projects: GA ČR(CZ) GA106/05/0495 Institutional research plan: CEZ:AV0Z20410507 Keywords : electorphoretic deposition * oxid/oxid ceramic matrix composites * flexural strength Subject RIV: JH - Ceramics, Fire-Resistant Materials and Glass Impact factor: 1.402, year: 2006 http://www3.interscience.wiley.com/cgi-bin/jissue/112579545

Two genetic loci produce distinct carbohydrate-rich structural components of the Pseudomonas aeruginosa biofilm matrix.

Science.gov (United States)

Friedman, Lisa; Kolter, Roberto

2004-07-01

Pseudomonas aeruginosa forms biofilms, which are cellular aggregates encased in an extracellular matrix. Molecular genetics studies of three common autoaggregative phenotypes, namely wrinkled colonies, pellicles, and solid-surface-associated biofilms, led to the identification of two loci, pel and psl, that are involved in the production of carbohydrate-rich components of the biofilm matrix. The pel gene cluster is involved in the production of a glucose-rich matrix material in P. aeruginosa strain PA14 (L. Friedman and R. Kolter, Mol. Microbiol. 51:675-690, 2004). Here we investigate the role of the pel gene cluster in P. aeruginosa strain ZK2870 and identify a second genetic locus, termed psl, involved in the production of a mannose-rich matrix material. The 11 predicted protein products of the psl genes are homologous to proteins involved in carbohydrate processing. P. aeruginosa is thus able to produce two distinct carbohydrate-rich matrix materials. Either carbohydrate-rich matrix component appears to be sufficient for mature biofilm formation, and at least one of them is required for mature biofilm formation in P. aeruginosa strains PA14 and ZK2870. Copyright 2004 American Society for Microbiology

Loss of Endothelial Barrier in Marfan Mice (mgR/mgR Results in Severe Inflammation after Adenoviral Gene Therapy.

Directory of Open Access Journals (Sweden)

Philipp Christian Seppelt

Full Text Available Marfan syndrome is an autosomal dominant inherited disorder of connective tissue. The vascular complications of Marfan syndrome have the biggest impact on life expectancy. The aorta of Marfan patients reveals degradation of elastin layers caused by increased proteolytic activity of matrix metalloproteinases (MMPs. In this study we performed adenoviral gene transfer of human tissue inhibitor of matrix metalloproteinases-1 (hTIMP-1 in aortic grafts of fibrillin-1 deficient Marfan mice (mgR/mgR in order to reduce elastolysis.We performed heterotopic infrarenal transplantation of the thoracic aorta in female mice (n = 7 per group. Before implantation, mgR/mgR and wild-type aortas (WT, C57BL/6 were transduced ex vivo with an adenoviral vector coding for human TIMP-1 (Ad.hTIMP-1 or β-galactosidase (Ad.β-Gal. As control mgR/mgR and wild-type aortas received no gene therapy. Thirty days after surgery, overexpression of the transgene was assessed by immunohistochemistry (IHC and collagen in situ zymography. Histologic staining was performed to investigate inflammation, the neointimal index (NI, and elastin breaks. Endothelial barrier function of native not virus-exposed aortas was evaluated by perfusion of fluorescent albumin and examinations of virus-exposed tissue were performed by transmission electron microscopy (TEM.IHC and ISZ revealed sufficient expression of the transgene. Severe cellular inflammation and intima hyperplasia were seen only in adenovirus treated mgR/mgR aortas (Ad.β-Gal, Ad.hTIMP-1 NI: 0.23; 0.43, but not in native and Ad.hTIMP-1 treated WT (NI: 0.01; 0.00. Compared to native mgR/mgR and Ad.hTIMP-1 treated WT aorta, the NI is highly significant greater in Ad.hTIMP-1 transduced mgR/mgR aorta (p = 0.001; p = 0.001. As expected, untreated Marfan grafts showed significant more elastolysis compared to WT (p = 0.001. However, elastolysis in Marfan aortas was not reduced by adenoviral overexpression of hTIMP-1 (compared to untreated

Determining the fracture resistance of fibre-reinforced glass matrix composites by means of the chevron-notch flexural technique

Czech Academy of Sciences Publication Activity Database

Boccaccini, A. R.; Kern, H.; Dlouhý, Ivo

2001-01-01

Roč. 308, 1/2 (2001), s. 111-117 ISSN 0921-5093 R&D Projects: GA ČR GV101/96/K264 Institutional research plan: CEZ:AV0Z2041904 Keywords : glass matrix composites * fracture toughness * chevron notch test Subject RIV: JH - Ceramics, Fire-Resistant Materials and Glass Impact factor: 0.978, year: 2001

P A M Dirac meets M G Krein: matrix orthogonal polynomials and Dirac's equation

International Nuclear Information System (INIS)

Duran, Antonio J; Gruenbaum, F Alberto

2006-01-01

The solution of several instances of the Schroedinger equation (1926) is made possible by using the well-known orthogonal polynomials associated with the names of Hermite, Legendre and Laguerre. A relativistic alternative to this equation was proposed by Dirac (1928) involving differential operators with matrix coefficients. In 1949 Krein developed a theory of matrix-valued orthogonal polynomials without any reference to differential equations. In Duran A J (1997 Matrix inner product having a matrix symmetric second order differential operator Rocky Mt. J. Math. 27 585-600), one of us raised the question of determining instances of these matrix-valued polynomials going along with second order differential operators with matrix coefficients. In Duran A J and Gruenbaum F A (2004 Orthogonal matrix polynomials satisfying second order differential equations Int. Math. Res. Not. 10 461-84), we developed a method to produce such examples and observed that in certain cases there is a connection with the instance of Dirac's equation with a central potential. We observe that the case of the central Coulomb potential discussed in the physics literature in Darwin C G (1928 Proc. R. Soc. A 118 654), Nikiforov A F and Uvarov V B (1988 Special Functions of Mathematical Physics (Basle: Birkhauser) and Rose M E 1961 Relativistic Electron Theory (New York: Wiley)), and its solution, gives rise to a matrix weight function whose orthogonal polynomials solve a second order differential equation. To the best of our knowledge this is the first instance of a connection between the solution of the first order matrix equation of Dirac and the theory of matrix-valued orthogonal polynomials initiated by M G Krein

Multi-threaded Sparse Matrix-Matrix Multiplication for Many-Core and GPU Architectures.

Energy Technology Data Exchange (ETDEWEB)

Deveci, Mehmet [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Rajamanickam, Sivasankaran [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Trott, Christian Robert [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

2017-12-01

Sparse Matrix-Matrix multiplication is a key kernel that has applications in several domains such as scienti c computing and graph analysis. Several algorithms have been studied in the past for this foundational kernel. In this paper, we develop parallel algorithms for sparse matrix-matrix multiplication with a focus on performance portability across different high performance computing architectures. The performance of these algorithms depend on the data structures used in them. We compare different types of accumulators in these algorithms and demonstrate the performance difference between these data structures. Furthermore, we develop a meta-algorithm, kkSpGEMM, to choose the right algorithm and data structure based on the characteristics of the problem. We show performance comparisons on three architectures and demonstrate the need for the community to develop two phase sparse matrix-matrix multiplication implementations for efficient reuse of the data structures involved.

The nuclear reaction matrix

International Nuclear Information System (INIS)

Krenciglowa, E.M.; Kung, C.L.; Kuo, T.T.S.; Osnes, E.; and Department of Physics, State University of New York at Stony Brook, Stony Brook, New York 11794)

1976-01-01

Different definitions of the reaction matrix G appropriate to the calculation of nuclear structure are reviewed and discussed. Qualitative physical arguments are presented in support of a two-step calculation of the G-matrix for finite nuclei. In the first step the high-energy excitations are included using orthogonalized plane-wave intermediate states, and in the second step the low-energy excitations are added in, using harmonic oscillator intermediate states. Accurate calculations of G-matrix elements for nuclear structure calculations in the Aapprox. =18 region are performed following this procedure and treating the Pauli exclusion operator Q 2 /sub p/ by the method of Tsai and Kuo. The treatment of Q 2 /sub p/, the effect of the intermediate-state spectrum and the energy dependence of the reaction matrix are investigated in detail. The present matrix elements are compared with various matrix elements given in the literature. In particular, close agreement is obtained with the matrix elements calculated by Kuo and Brown using approximate methods

Effects of Control Mode and R-Ratio on the Fatigue Behavior of a Metal Matrix Composite

Science.gov (United States)

2005-01-01

Composite Because of their high specific stiffness and strength at elevated temperatures, continuously reinforced metal matrix composites (MMC's) are under consideration for a future generation of aeropropulsion systems. Since components in aeropropulsion systems experience substantial cyclic thermal and mechanical loads, the fatigue behavior of MMC's is of great interest. Almost without exception, previous investigations of the fatigue behavior of MMC's have been conducted in a tension-tension, load-controlled mode. This has been due to the fact that available material is typically less than 2.5-mm thick and, therefore, unable to withstand high compressive loads without buckling. Since one possible use of MMC's is in aircraft skins, this type of testing mode may be appropriate. However, unlike aircraft skins, most engine components are thick. In addition, the transient thermal gradients experienced in an aircraft engine will impose tension-compression loading on engine components, requiring designers to understand how the MMC will behave under fully reversed loading conditions. The increased thickness of the MMC may also affect the fatigue life. Traditionally, low-cycle fatigue (LCF) tests on MMC's have been performed in load control. For monolithic alloys, low-cycle fatigue tests are more typically performed in strain control. Two reasons justify this choice: (1) the critical volume from which cracks initiate and grow is generally small and elastically constrained by the larger surrounding volume of material, and (2) load-controlled, low-cycle fatigue tests of monolithics invariably lead to unconstrained ratcheting and localized necking--an undesired material response because the failure mechanism is far more severe than, and unrelated to, the fatigue mechanism being studied. It is unknown if this is the proper approach to composite testing. However, there is a lack of strain-controlled data on which to base any decisions. Consequently, this study addresses the

Matrix-based autologous chondrocyte implantation for cartilage repair with Hyalograft(R)C: Two-year follow-up by magnetic resonance imaging

International Nuclear Information System (INIS)

Trattnig, S.; Pinker, K.; Krestan, C.; Plank, C.; Millington, S.; Marlovits, S.

2006-01-01

Objective: Monitoring of articular cartilage repair after matrix-associated autologous chondrocyte implantation with Hyalograft ( R)C by a new grading system based on non-invasive high-resolution magnetic resonance imaging. Patients and methods: In 23 patients, postoperative magnetic resonance imaging (MRI) was performed between 76 and 120 weeks. In nine of these patients, five MRI examinations were performed at 4, 12, 24, 52 and 104 weeks after Hyalograft ( R)C implant. The repair tissue was described with separate variables: degree of defect repair in width and length, signal intensity of the repair tissue and status of the subchondral bone. For these variables a grading system with point scale evaluation was applied. Results: A complete filling of the defect by repair tissue was found in 15 patients. A moderate hypertrophy of the repair tissue was found in two patients. An underfilling of the defect by repair tissue was observed in four patients. In one patient, a partial detachment of the implant with associated subchondral cyst and edema was seen, and in one patient, a complete detachment of the graft was observed. The filling of the defect parallel to cartilage surface (integration) was complete in 18 cases. A split-like incomplete integration was present in one patient. Incomplete integration was found in four patients. The signal intensity of the implant on FSE and on 3D-GRE+FS was isointense compared to native normal cartilage in all cases after 12 months. The subchondral bone was normal in 14 patients. An edema-like signal alteration was found in three cases. In six patients, a non-edema abnormality of the subchondral bone (granulation tissue, cysts or sclerosis) was present. On follow-up exams performed in nine patients at the same postoperative intervals dynamic processes such as filling of partial defects, vanishing of hypertrophies and change of signal intensity of implant to isointensity with native articular cartilage were observed. A comparison

Global unitary fixing and matrix-valued correlations in matrix models

International Nuclear Information System (INIS)

Adler, Stephen L.; Horwitz, Lawrence P.

2003-01-01

We consider the partition function for a matrix model with a global unitary invariant energy function. We show that the averages over the partition function of global unitary invariant trace polynomials of the matrix variables are the same when calculated with any choice of a global unitary fixing, while averages of such polynomials without a trace define matrix-valued correlation functions, that depend on the choice of unitary fixing. The unitary fixing is formulated within the standard Faddeev-Popov framework, in which the squared Vandermonde determinant emerges as a factor of the complete Faddeev-Popov determinant. We give the ghost representation for the FP determinant, and the corresponding BRST invariance of the unitary-fixed partition function. The formalism is relevant for deriving Ward identities obeyed by matrix-valued correlation functions

Connecting N-representability to Weyl's problem: the one-particle density matrix for N = 3 and R = 6

International Nuclear Information System (INIS)

Ruskai, Mary Beth

2007-01-01

An analytic proof of the necessity of the Borland-Dennis conditions for 3-representability of a one-particle density matrix with rank 6 is given. This may shed some light on Klyachko's recent use of Schubert calculus to find general conditions for N-representability. (fast track communication)

Matrix Information Geometry

CERN Document Server

Bhatia, Rajendra

2013-01-01

This book is an outcome of the Indo-French Workshop on Matrix Information Geometries (MIG): Applications in Sensor and Cognitive Systems Engineering, which was held in Ecole Polytechnique and Thales Research and Technology Center, Palaiseau, France, in February 23-25, 2011. The workshop was generously funded by the Indo-French Centre for the Promotion of Advanced Research (IFCPAR).  During the event, 22 renowned invited french or indian speakers gave lectures on their areas of expertise within the field of matrix analysis or processing. From these talks, a total of 17 original contribution or state-of-the-art chapters have been assembled in this volume. All articles were thoroughly peer-reviewed and improved, according to the suggestions of the international referees. The 17 contributions presented  are organized in three parts: (1) State-of-the-art surveys & original matrix theory work, (2) Advanced matrix theory for radar processing, and (3) Matrix-based signal processing applications.  

Engineering a collagen matrix that replicates the biological properties of native extracellular matrix.

Science.gov (United States)

Nam, Kwangwoo; Sakai, Yuuki; Funamoto, Seiichi; Kimura, Tsuyoshi; Kishida, Akio

2011-01-01

In this study, we aimed to replicate the function of native tissues that can be used in tissue engineering and regenerative medicine. The key to such replication is the preparation of an artificial collagen matrix that possesses a structure resembling that of the extracellular matrix. We, therefore, prepared a collagen matrix by fibrillogenesis in a NaCl/Na(2)HPO(4) aqueous solution using a dialysis cassette and investigated its biological behavior in vitro and in vivo. The in vitro cell adhesion and proliferation did not show any significant differences. The degradation rate in the living body could be controlled according to the preparation condition, where the collagen matrix with high water content (F-collagen matrix, >98%) showed fast degradation and collagen matrix with lower water content (T-collagen matrix, >80%) showed no degradation for 8 weeks. The degradation did not affect the inflammatory response at all and relatively faster wound healing response was observed. Comparing this result with that of collagen gel and decellularized cornea, it can be concluded that the structural factor is very important and no cell abnormal behavior would be observed for quaternary structured collagen matrix.

Carbonate fuel cell matrix

Science.gov (United States)

Farooque, Mohammad; Yuh, Chao-Yi

1996-01-01

A carbonate fuel cell matrix comprising support particles and crack attenuator particles which are made platelet in shape to increase the resistance of the matrix to through cracking. Also disclosed is a matrix having porous crack attenuator particles and a matrix whose crack attenuator particles have a thermal coefficient of expansion which is significantly different from that of the support particles, and a method of making platelet-shaped crack attenuator particles.

Method of forming a ceramic matrix composite and a ceramic matrix component

Science.gov (United States)

de Diego, Peter; Zhang, James

2017-05-30

A method of forming a ceramic matrix composite component includes providing a formed ceramic member having a cavity, filling at least a portion of the cavity with a ceramic foam. The ceramic foam is deposited on a barrier layer covering at least one internal passage of the cavity. The method includes processing the formed ceramic member and ceramic foam to obtain a ceramic matrix composite component. Also provided is a method of forming a ceramic matrix composite blade and a ceramic matrix composite component.

Mechanical and IL-1β Responsive miR-365 Contributes to Osteoarthritis Development by Targeting Histone Deacetylase 4

Directory of Open Access Journals (Sweden)

Xu Yang

2016-03-01

Full Text Available Mechanical stress plays an important role in the initiation and progression of osteoarthritis. Studies show that excessive mechanical stress can directly damage the cartilage extracellular matrix and shift the balance in chondrocytes to favor catabolic activity over anabolism. However, the underlying mechanism remains unknown. MicroRNAs (miRNAs are emerging as important regulators in osteoarthritis pathogenesis. We have found that mechanical loading up-regulated microRNA miR-365 in growth plate chondrocytes, which promotes chondrocyte differentiation. Here, we explored the role of the mechanical responsive microRNA miR-365 in pathogenesis of osteoarthritis (OA. We found that miR-365 was up-regulated by cyclic loading and IL-1β stimulation in articular chondrocytes through a mechanism that involved the transcription factor NF-κB. miR-365 expressed significant higher level in rat anterior cruciate ligament (ACL surgery induced OA cartilage as well as human OA cartilage from primary OA patients and traumatic OA Patients. Overexpression of miR-365 in chondrocytes increases gene expression of matrix degrading enzyme matrix metallopeptidase 13 (MMP13 and collagen type X (Col X. The increase in miR-365 expression in OA cartilage and in response to IL-1 may contribute to the abnormal gene expression pattern characteristic of OA. Inhibition of miR-365 down-regulated IL-1β induced MMP13 and Col X gene expression. We further showed histone deacetylase 4 (HDAC4 is a direct target of miR-365, which mediates mechanical stress and inflammation in OA pathogenesis. Thus, miR-365 is a critical regulator of mechanical stress and pro-inflammatory responses, which contributes cartilage catabolism. Manipulation of the expression of miR-365 in articular chondrocytes by miR-365 inhibitor may be a potent therapeutic target for the prevention and treatment of osteoarthritis.

Hamiltonian formalism, quantization and S matrix for supergravity. [S matrix, canonical constraints

Energy Technology Data Exchange (ETDEWEB)

Fradkin, E S; Vasiliev, M A [AN SSSR, Moscow. Fizicheskij Inst.

1977-12-05

The canonical formalism for supergravity is constructed. The algebra of canonical constraints is found. The correct expression for the S matrix is obtained. Usual 'covariant methods' lead to an incorrect S matrix in supergravity since a new four-particle interaction of ghostfields survives in the Lagrangian expression of the S matrix.

EvolQG - An R package for evolutionary quantitative genetics [version 2; referees: 1 approved, 2 approved with reservations

Directory of Open Access Journals (Sweden)

Diogo Melo

2016-06-01

Full Text Available We present an open source package for performing evolutionary quantitative genetics analyses in the R environment for statistical computing. Evolutionary theory shows that evolution depends critically on the available variation in a given population. When dealing with many quantitative traits this variation is expressed in the form of a covariance matrix, particularly the additive genetic covariance matrix or sometimes the phenotypic matrix, when the genetic matrix is unavailable and there is evidence the phenotypic matrix is sufficiently similar to the genetic matrix. Given this mathematical representation of available variation, the EvolQG package provides functions for calculation of relevant evolutionary statistics; estimation of sampling error; corrections for this error; matrix comparison via correlations, distances and matrix decomposition; analysis of modularity patterns; and functions for testing evolutionary hypotheses on taxa diversification.

Refined open intersection numbers and the Kontsevich-Penner matrix model

Energy Technology Data Exchange (ETDEWEB)

Alexandrov, Alexander [Center for Geometry and Physics, Institute for Basic Science (IBS),Pohang 37673 (Korea, Republic of); Centre de Recherches Mathématiques (CRM), Université de Montréal,Montréal (Canada); Department of Mathematics and Statistics, Concordia University,Montréal (Canada); Institute for Theoretical and Experimental Physics (ITEP),Moscow (Russian Federation); Buryak, Alexandr [Department of Mathematics, ETH Zurich, Zurich (Switzerland); Tessler, Ran J. [Institute for Theoretical Studies, ETH Zurich,Zurich (Switzerland)

2017-03-23

A study of the intersection theory on the moduli space of Riemann surfaces with boundary was recently initiated in a work of R. Pandharipande, J.P. Solomon and the third author, where they introduced open intersection numbers in genus 0. Their construction was later generalized to all genera by J.P. Solomon and the third author. In this paper we consider a refinement of the open intersection numbers by distinguishing contributions from surfaces with different numbers of boundary components, and we calculate all these numbers. We then construct a matrix model for the generating series of the refined open intersection numbers and conjecture that it is equivalent to the Kontsevich-Penner matrix model. An evidence for the conjecture is presented. Another refinement of the open intersection numbers, which describes the distribution of the boundary marked points on the boundary components, is also discussed.

Refined open intersection numbers and the Kontsevich-Penner matrix model

International Nuclear Information System (INIS)

Alexandrov, Alexander; Buryak, Alexandr; Tessler, Ran J.

2017-01-01

A study of the intersection theory on the moduli space of Riemann surfaces with boundary was recently initiated in a work of R. Pandharipande, J.P. Solomon and the third author, where they introduced open intersection numbers in genus 0. Their construction was later generalized to all genera by J.P. Solomon and the third author. In this paper we consider a refinement of the open intersection numbers by distinguishing contributions from surfaces with different numbers of boundary components, and we calculate all these numbers. We then construct a matrix model for the generating series of the refined open intersection numbers and conjecture that it is equivalent to the Kontsevich-Penner matrix model. An evidence for the conjecture is presented. Another refinement of the open intersection numbers, which describes the distribution of the boundary marked points on the boundary components, is also discussed.

A novel reduced graphene oxide decorated with halloysite nanotubes (HNTs-d-rGO hybrid composite and its flame-retardant application for polyamide 6

Directory of Open Access Journals (Sweden)

M. F. Zhu

2014-06-01

Full Text Available The improvement of flame-retardant properties of polyamide 6 (PA6 was achieved by using reduced graphene oxide decorated with halloysite nanotubes (HNTs-d-rGO hybrid composite as the additive in PA6 matrix. The intimate integration of reduced graphene oxide (rGO and halloysite nanotubes (HNTs through a three-step chemical functionalization, enabled the combination of their unique physical and chemical characteristics together. The nanostructure of HNTs-d-rGO was determined by Fourier transform infrared spectroscopy (FTIR, X-ray photoelectron spectroscopy (XPS and transmission electron microscopy (TEM. A morphological study revealed that HNTs-d-rGO was dispersed uniformly in PA6 matrix. From the results of cone calorimetry measurements, the fire retardant properties of PA6 were further improved with the addition of HNTs-d-rGO when compared with that of either HNTs, or GO, or a mixture of HNTs and GO (HNTs-m-GO used in PA6 matrix. The results indicate clearly that higher flame-retardant activity of the integrated HNTs-d-rGO nanostructures than that of the simple mixture verifies the importance of the intimate integration between HNTs and rGO, which ascribe to the combination of the stable silica layer created by HNT and the barrier effect of rGO.

The Matrix Cookbook

DEFF Research Database (Denmark)

Petersen, Kaare Brandt; Pedersen, Michael Syskind

Matrix identities, relations and approximations. A desktop reference for quick overview of mathematics of matrices.......Matrix identities, relations and approximations. A desktop reference for quick overview of mathematics of matrices....

Bibliography on Ceramic Matrix Composites and Reinforcing Whiskers, Platelets, and Fibers, 1970-1990

Science.gov (United States)

1993-08-01

Triphasic Sol-Gel Route 2.2.3.8 Srikanth, V. Ravindranathan, P. Crystallization of Gel-Derived Mullite-Zirconia Rani, L. Roy, R. Composites Metal and...179 9.8.1 ArmorMaterials 9.8.1.5 Ceramic Matrix Composite Reactor /Radiator 9.8.1.1 Armor Structures Development and Current Status of Armor Pacquette, E

R-matrix analysis of 235U neutron transmission and cross sections in the energy range 0 to 2.25 keV

International Nuclear Information System (INIS)

Leal, L.C.; Derrien, H.; Larson, N.M.; Wright, R.Q.

1997-11-01

This document describes a new R-matrix analysis of 235 U cross section data in the energy range from 0 to 2,250 eV. The analysis was performed with the computer code SAMMY, that has recently been updated to permit, for the first time, inclusion of both differential and integral data within the analysis process. Fourteen differential data sets and six integral quantities were used in this evaluation: two measurements of fission plus capture, one of fission plus absorption, six of fission alone, two of transmission, and one of eta, plus standard values of thermal cross sections for fission, capture, and scattering, and of K1 and the Westcott g-factors for both fission and absorption. An excellent representation was obtained for the high-resolution transmission, fission, and capture cross-section data as well as for the integral quantities. The result is a single set of resonance parameters spanning the entire range up to 2,250 eV, a decided improvement over the present ENDF/VI evaluation, in which eleven discrete resonance parameter sets are required to cover that same energy range. This new evaluation is expected to greatly improve predictability of the criticality safety margins for nuclear systems in which 235 U is present

Multi-threaded Sparse Matrix Sparse Matrix Multiplication for Many-Core and GPU Architectures.

Energy Technology Data Exchange (ETDEWEB)

Deveci, Mehmet [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Trott, Christian Robert [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Rajamanickam, Sivasankaran [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

2018-01-01

Sparse Matrix-Matrix multiplication is a key kernel that has applications in several domains such as scientific computing and graph analysis. Several algorithms have been studied in the past for this foundational kernel. In this paper, we develop parallel algorithms for sparse matrix- matrix multiplication with a focus on performance portability across different high performance computing architectures. The performance of these algorithms depend on the data structures used in them. We compare different types of accumulators in these algorithms and demonstrate the performance difference between these data structures. Furthermore, we develop a meta-algorithm, kkSpGEMM, to choose the right algorithm and data structure based on the characteristics of the problem. We show performance comparisons on three architectures and demonstrate the need for the community to develop two phase sparse matrix-matrix multiplication implementations for efficient reuse of the data structures involved.

Parallelism in matrix computations

CERN Document Server

Gallopoulos, Efstratios; Sameh, Ahmed H

2016-01-01

This book is primarily intended as a research monograph that could also be used in graduate courses for the design of parallel algorithms in matrix computations. It assumes general but not extensive knowledge of numerical linear algebra, parallel architectures, and parallel programming paradigms. The book consists of four parts: (I) Basics; (II) Dense and Special Matrix Computations; (III) Sparse Matrix Computations; and (IV) Matrix functions and characteristics. Part I deals with parallel programming paradigms and fundamental kernels, including reordering schemes for sparse matrices. Part II is devoted to dense matrix computations such as parallel algorithms for solving linear systems, linear least squares, the symmetric algebraic eigenvalue problem, and the singular-value decomposition. It also deals with the development of parallel algorithms for special linear systems such as banded ,Vandermonde ,Toeplitz ,and block Toeplitz systems. Part III addresses sparse matrix computations: (a) the development of pa...

The extracellular matrix metalloproteinase inducer EMMPRIN is a target of nitric oxide in myocardial ischemia/reperfusion.

Science.gov (United States)

Tarin, Carlos; Lavin, Begoña; Gomez, Monica; Saura, Marta; Diez-Juan, Antonio; Zaragoza, Carlos

2011-07-15

Nitric oxide (NO) is an important defense against myocardial ischemia/reperfusion (I/R) injury. Although matrix metalloproteinase (MMP)-mediated necrosis of cardiac myocytes is well characterized, the role of inducible NO synthase (iNOS)-derived NO in this process is poorly understood. I/R injury was increased in iNOS-deficient mice and in mice treated with 1400 W (a pharmacological iNOS inhibitor) and was associated with significantly increased expression of extracellular matrix metalloproteinase inducer (EMMPRIN) and EMMPRIN-associated MMPs. Transcriptional activity of an EMMPRIN luciferase promoter reporter expressed in cardiac myocytes was inhibited by NO in a cGMP-dependent manner, and this transcriptional inhibition was abolished by mutation of a putative E2F site. Consistent with these findings, EMMPRIN null mice, in which iNOS is normally induced, are partially protected against I/R injury. Pharmacological inhibition of iNOS in EMMPRIN null mice had no additional protective effect, suggesting that EMMPRIN is a downstream target of NO. Administration of anti-EMMPRIN neutralizing antibodies partly reduced the excess heart damage and MMP-9 expression induced by I/R in iNOS null mice, indicating that regulation of EMMPRIN is an important mechanism of NO-mediated cardioprotection. Copyright © 2011 Elsevier Inc. All rights reserved.

Brain Diffusivity and Structural Changes in the R6/2 Mouse Model of Huntington Disease

Czech Academy of Sciences Publication Activity Database

Voříšek, Ivan; Syka, Michael; Vargová, Lýdia

2017-01-01

Roč. 95, č. 7 (2017), s. 1474-1484 ISSN 0360-4012 R&D Projects: GA ČR(CZ) GBP304/12/G069 Institutional support: RVO:68378041 Keywords : extracellular matrix * astrogliosis * magnetic resonance imaging Subject RIV: ED - Physiology OBOR OECD: Neuroscience s (including psychophysiology Impact factor: 2.481, year: 2016

The Exopolysaccharide Matrix

Science.gov (United States)

Koo, H.; Falsetta, M.L.; Klein, M.I.

2013-01-01

Many infectious diseases in humans are caused or exacerbated by biofilms. Dental caries is a prime example of a biofilm-dependent disease, resulting from interactions of microorganisms, host factors, and diet (sugars), which modulate the dynamic formation of biofilms on tooth surfaces. All biofilms have a microbial-derived extracellular matrix as an essential constituent. The exopolysaccharides formed through interactions between sucrose- (and starch-) and Streptococcus mutans-derived exoenzymes present in the pellicle and on microbial surfaces (including non-mutans) provide binding sites for cariogenic and other organisms. The polymers formed in situ enmesh the microorganisms while forming a matrix facilitating the assembly of three-dimensional (3D) multicellular structures that encompass a series of microenvironments and are firmly attached to teeth. The metabolic activity of microbes embedded in this exopolysaccharide-rich and diffusion-limiting matrix leads to acidification of the milieu and, eventually, acid-dissolution of enamel. Here, we discuss recent advances concerning spatio-temporal development of the exopolysaccharide matrix and its essential role in the pathogenesis of dental caries. We focus on how the matrix serves as a 3D scaffold for biofilm assembly while creating spatial heterogeneities and low-pH microenvironments/niches. Further understanding on how the matrix modulates microbial activity and virulence expression could lead to new approaches to control cariogenic biofilms. PMID:24045647

BiplotGUI: Interactive Biplots in R

Directory of Open Access Journals (Sweden)

Anthony la Grange

2009-06-01

Full Text Available Biplots simultaneously provide information on both the samples and the variables ofa data matrix in two- or three-dimensional representations. The BiplotGUI package provides a graphical user interface for the construction of, interaction with, and manipulation of biplots in R. The samples are represented as points, with coordinates determined either by the choice of biplot, principal coordinate analysis or multidimensional scaling. Various transformations and dissimilarity metrics are available. Information on the original variables is incorporated by linear or non-linear calibrated axes. Goodness-of-t measures are provided. Additional descriptors can be superimposed, including convex hulls, alpha-bags, point densities and classication regions. Amongst the interactive features are dynamic variable value prediction, zooming and point and axis drag-and-drop. Output can easily be exported to the R workspace for further manipulation. Three-dimensional biplots are incorporated via the rgl package. The user requires almost no knowledge of R syntax.

EVALUATION OF A BUFFERED SOLID PHASE DISPERSION PROCEDURE ADAPTED FOR PESTICIDE ANALYSES IN THE SOIL MATRIX

Directory of Open Access Journals (Sweden)

Ana María Domínguez

2015-08-01

Full Text Available An evaluation of the pesticides extracted from the soil matrix was conducted using a citrate-buffered solid phase dispersion sample preparation method (QuEChERS. The identification and quantitation of pesticide compounds was performed using gas chromatography-mass spectrometry. Because of the occurrence of the matrix effect in 87% of the analyzed pesticides, the quantification was performed using matrix-matched calibration. The method's quantification limits were between 0.01 and 0.5 mg kg-1. Repeatability and intermediate precision, expressed as a relative standard deviation percentage, were less than 20%. The recoveries in general ranged between 62% and 99%, with a relative standard deviation < 20%. All the responses were linear, with a correlation coefficient (r ≥0.99.

The Biological Role of Hyaluronan-Rich Oocyte-Cumulus Extracellular Matrix in Female Reproduction

Czech Academy of Sciences Publication Activity Database

Nagyová, Eva

2018-01-01

Roč. 19, č. 1 (2018), č. článku 283. E-ISSN 1422-0067 R&D Projects: GA MŠk EF15_003/0000460 Institutional support: RVO:67985904 Keywords : extracellular matrix * hyaluronan * inter-alpha-trypsin inhibitor Subject RIV: EB - Genetics ; Molecular Biology OBOR OECD: Biochemistry and molecular biology Impact factor: 3.226, year: 2016

Mechanical and fracture properties of R-glass reinforced composites with pyrolysed polysiloxane resin as a matrix

Czech Academy of Sciences Publication Activity Database

Černý, Martin; Bednářová, D.; Glogar, Petr; Dusza, J.; Rudnayová, E.

2005-01-01

Roč. 290, - (2005), s. 344-347 ISSN 1013-9826. [International conference on fractography of advanced ceramics /2./. Stará Lesná, 03.10.2005-06.10.2005] R&D Projects: GA AV ČR(CZ) KSK2067107; GA ČR GA106/02/0177 Institutional research plan: CEZ:AV0Z30460519 Keywords : unidirectional composite * glass fiber reinforcement * pyrolysed polysiloxane resins Subject RIV: JH - Ceramics, Fire-Resistant Materials and Glass Impact factor: 0.224, year: 2005

Multivariate Matrix-Exponential Distributions

DEFF Research Database (Denmark)

Bladt, Mogens; Nielsen, Bo Friis

2010-01-01

be written as linear combinations of the elements in the exponential of a matrix. For this reason we shall refer to multivariate distributions with rational Laplace transform as multivariate matrix-exponential distributions (MVME). The marginal distributions of an MVME are univariate matrix......-exponential distributions. We prove a characterization that states that a distribution is an MVME distribution if and only if all non-negative, non-null linear combinations of the coordinates have a univariate matrix-exponential distribution. This theorem is analog to a well-known characterization theorem...

Vibrational relaxation and energy transfer of matrix isolated HCl and DCl

Energy Technology Data Exchange (ETDEWEB)

Wiesenfeld, J.M.

1977-12-01

Vibrational kinetic and spectroscopic studies have been performed on matrix-isolated HCl and DCl between 9 and 20 K. Vibrational relaxation rates for v = 2 and v = 1 were measured by a tunable infrared laser-induced, time-resolved fluorescence technique. In an Ar matrix, vibrational decay times are faster than radiative and it is found that HCl relaxes about 35 times more rapidly than CCl, in spite of the fact that HCl must transfer more energy to the lattice than DCl. This result is explained by postulating that the rate-determining step for vibrational relaxation produces a highly rotationally excited guest in a V yield R step; rotational relaxation into lattice phonons follows rapidly. HCl v = 1, but not v = 2, excitation rapidly diffuses through the sample by a resonant dipole-dipole vibrational energy transfer process. Molecular complexes, and in particular the HCl dimer, relax too rapidly for direct observation, less than or approximately 1 ..mu..s, and act as energy sinks in the energy diffusion process. The temperature dependence for all these processes is weak--less than a factor of two between 9 and 20 K. Vibrational relaxation of HCl in N/sub 2/ and O/sub 2/ matrices is unobservable, presumably due to rapid V yield V transfer to the host. A V yield R binary collision model for relaxation in solids is successful in explaining the HCl(DCl)/Ar results as well as results of other experimenters. The model considers relaxation to be the result of ''collisions'' due to molecular motion in quantized lattice normal modes--gas phase potential parameters can fit the matrix kinetic data.

Vibrational relaxation and energy transfer of matrix isolated HCl and DCl

International Nuclear Information System (INIS)

Wiesenfeld, J.M.

1977-12-01

Vibrational kinetic and spectroscopic studies have been performed on matrix-isolated HCl and DCl between 9 and 20 K. Vibrational relaxation rates for v = 2 and v = 1 were measured by a tunable infrared laser-induced, time-resolved fluorescence technique. In an Ar matrix, vibrational decay times are faster than radiative and it is found that HCl relaxes about 35 times more rapidly than CCl, in spite of the fact that HCl must transfer more energy to the lattice than DCl. This result is explained by postulating that the rate-determining step for vibrational relaxation produces a highly rotationally excited guest in a V yield R step; rotational relaxation into lattice phonons follows rapidly. HCl v = 1, but not v = 2, excitation rapidly diffuses through the sample by a resonant dipole-dipole vibrational energy transfer process. Molecular complexes, and in particular the HCl dimer, relax too rapidly for direct observation, less than or approximately 1 μs, and act as energy sinks in the energy diffusion process. The temperature dependence for all these processes is weak--less than a factor of two between 9 and 20 K. Vibrational relaxation of HCl in N 2 and O 2 matrices is unobservable, presumably due to rapid V yield V transfer to the host. A V yield R binary collision model for relaxation in solids is successful in explaining the HCl(DCl)/Ar results as well as results of other experimenters. The model considers relaxation to be the result of ''collisions'' due to molecular motion in quantized lattice normal modes--gas phase potential parameters can fit the matrix kinetic data

Reduced extracellular space in the brain of tenascin-R- and HNK-1-sulphotransferase deficient mice

Czech Academy of Sciences Publication Activity Database

Syková, Eva; Voříšek, Ivan; Mazel, Tomáš; Antonova, Tatiana; Schachner, M.

2005-01-01

Roč. 22, č. 8 (2005), s. 1873-1880 ISSN 0953-816X R&D Projects: GA ČR(CZ) GA309/04/0753; GA MŠk(CZ) 1M0538 Institutional research plan: CEZ:AV0Z50390512 Keywords : diffusion * extracellular matrix Subject RIV: FH - Neurology Impact factor: 3.949, year: 2005

Influence of the absorptive part of the complex potential on the S-Matrix poles

International Nuclear Information System (INIS)

Grama, C.; Grama, N.; Zamfirescu, I

2001-01-01

Although the polology of the S-matrix has been extensively studied, it occurred that some aspects remained disputable in the case of complex central potential V(r)=gV(r), g in C . These aspects are related to the origin of the observed narrow Σ-hypernuclear states that have been interpreted by Gal, Toker and Alexander as states which correspond to S-matrix poles situated in the second k-plane quadrant. From the analytical properties of the S-matrix for a real potential it results that there is no pole in the first and second k-plane quadrants, except for the imaginary k-axis. By switching on the absorption the S-matrix poles for real potential can evolve into the second quadrant of the k-plane. A critical study of the Σ-hypernuclear states needs the analysis of the motion of the S-matrix poles in the k-plane for variable complex coupling strength g. Recently contradictory opinions relative to the S-matrix poles trajectories in the complex k-plane for a complex square potential occurred. According to some authors the poles in the second quadrant can occur either from bound state poles moving anticlockwise, or from virtual state poles and capture resonant state poles moving clockwise as the absorption is switched on. Dabrowski argues that the statement made by Gal et al, Bonetti et al and Oset et al concerning the movement of the virtual poles with increasing absorptive potential is in general not correct. Dabrowski relates the direction in which the pole moves when the potential absorption increases to the direction in which the pole moves with increasing the real part of the potential, without clarifying this last question. For example, two poles moving in opposite directions along the imaginary k-axis are associated by Dabrowski to the same state. This is a wrong result, because one should associate a single pole to each quantum state. The aim of our work is to study the influence of the absorptive part of the potential on the S-matrix poles for the non

Constraints on a general 3-generation neutrino mass matrix from neutrino data application to the MSSM with R-parity violation

CERN Document Server

Abada, A

2000-01-01

We consider a general symmetric $(3\\times 3)$ mass matrix for three generations of neutrinos. Imposing the constraints, from the atmospheric neutrino and solar neutrino anomalies as well as from the CHOOZ experiment, on the mass squared differences and on the mixing angles, we identify the ranges of allowed inputs for the 6 matrix elements. We apply our results to Majorana left-handed neutrino masses generated at tree level and through The present experimental results on neutrinos from laboratories, cosmology and astrophysics are implemented to either put bounds on trilinear ($\\lambda_{ijk}, or constrain combinations of products of these couplings.

Convergence estimates for iterative methods via the Kriess Matrix Theorem on a general complex domain

Energy Technology Data Exchange (ETDEWEB)

Toh, K.C.; Trefethen, L.N. [Cornell Univ., Ithaca, NY (United States)

1994-12-31

What properties of a nonsymmetric matrix A determine the convergence rate of iterations such as GMRES, QMR, and Arnoldi? If A is far from normal, should one replace the usual Ritz values {r_arrow} eigenvalues notion of convergence of Arnoldi by alternative notions such as Arnoldi lemniscates {r_arrow} pseudospectra? Since Krylov subspace iterations can be interpreted as minimization processes involving polynomials of matrices, the answers to questions such as these depend upon mathematical problems of the following kind. Given a polynomial p(z), how can one bound the norm of p(A) in terms of (1) the size of p(z) on various sets in the complex plane, and (2) the locations of the spectrum and pseudospectra of A? This talk reports some progress towards solving these problems. In particular, the authors present theorems that generalize the Kreiss matrix theorem from the unit disk (for the monomial A{sup n}) to a class of general complex domains (for polynomials p(A)).

Matrix with Prescribed Eigenvectors

Science.gov (United States)

Ahmad, Faiz

2011-01-01

It is a routine matter for undergraduates to find eigenvalues and eigenvectors of a given matrix. But the converse problem of finding a matrix with prescribed eigenvalues and eigenvectors is rarely discussed in elementary texts on linear algebra. This problem is related to the "spectral" decomposition of a matrix and has important technical…

Matrix Metalloproteinase-9 (MMP-9 polymorphisms in patients with cutaneous malignant melanoma

Directory of Open Access Journals (Sweden)

Busam Klaus

2007-03-01

Full Text Available Abstract Background Cutaneous Malignant Melanoma causes over 75% of skin cancer-related deaths, and it is clear that many factors may contribute to the outcome. Matrix Metalloproteinases (MMPs play an important role in the degradation and remodeling of the extracellular matrix and basement membrane that, in turn, modulate cell division, migration and angiogenesis. Some polymorphisms are known to influence gene expression, protein activity, stability, and interactions, and they were shown to be associated with certain tumor phenotypes and cancer risk. Methods We tested seven polymorphisms within the MMP-9 gene in 1002 patients with melanoma in order to evaluate germline genetic variants and their association with progression and known risk factors of melanoma. The polymorphisms were selected based on previously published reports and their known or potential functional relevance using in-silico methods. Germline DNA was then genotyped using pyrosequencing, melting temperature profiles, heteroduplex analysis, and fragment size analysis. Results We found that reference alleles were present in higher frequency in patients who tend to sunburn, have family history of melanoma, higher melanoma stage, intransit metastasis and desmoplastic melanomas among others. However, after adjustment for age, sex, phenotypic index, moles, and freckles only Q279R, P574R and R668Q had significant associations with intransit metastasis, propensity to tan/sunburn and primary melanoma site. Conclusion This study does not provide strong evidence for further investigation into the role of the MMP-9 SNPs in melanoma progression.

Relativistic atomic matrix elements of rq for arbitrary states in the quantum-defect approximation

International Nuclear Information System (INIS)

Owono Owono, L.C.; Owona Angue, M.L.C.; Kwato Njock, M.G.; Oumarou, B.

2004-01-01

Recurrence relations used in the calculation of matrix elements of r q for arbitrary q and states of the relativistic one-electron atom with a point-like ionic core are obtained with Dirac and quasirelativistic effective radial Hamiltonians. The phenomenological and supersymmetry-inspired quantum-defect approaches introduced in previous works to model the electron-core interactions are employed. The formulas worked out on the basis of a hypervirial inspired method may be viewed as a generalization to off-diagonal cases of our recently reported results on the evaluation of expectation values of r q

Elementary matrix theory

CERN Document Server

Eves, Howard

1980-01-01

The usefulness of matrix theory as a tool in disciplines ranging from quantum mechanics to psychometrics is widely recognized, and courses in matrix theory are increasingly a standard part of the undergraduate curriculum.This outstanding text offers an unusual introduction to matrix theory at the undergraduate level. Unlike most texts dealing with the topic, which tend to remain on an abstract level, Dr. Eves' book employs a concrete elementary approach, avoiding abstraction until the final chapter. This practical method renders the text especially accessible to students of physics, engineeri

From r-spin intersection numbers to Hodge integrals

Energy Technology Data Exchange (ETDEWEB)

Ding, Xiang-Mao; Li, Yuping [Institute of Applied Mathematics, Academy of Mathematics and Systems Science,Chinese Academy of Sciences,Beijing 100190, People’s Republic of (China); Meng, Lingxian [Institute of Applied Mathematics, Academy of Mathematics and Systems Science,Chinese Academy of Sciences,Beijing 100190, People’s Republic of (China); College of Mathematics and Information Science, Zhengzhou University of Light Industry,Zhengzhou 450002, People’s Republic of (China)

2016-01-04

Generalized Kontsevich Matrix Model (GKMM) with a certain given potential is the partition function of r-spin intersection numbers. We represent this GKMM in terms of fermions and expand it in terms of the Schur polynomials by boson-fermion correspondence, and link it with a Hurwitz partition function and a Hodge partition by operators in a (GL)-hat (∞) group. Then, from a W{sub 1+∞} constraint of the partition function of r-spin intersection numbers, we get a W{sub 1+∞} constraint for the Hodge partition function. The W{sub 1+∞} constraint completely determines the Schur polynomials expansion of the Hodge partition function.

Effect of Fiber Poisson Contraction on Matrix Multicracking Evolution of Fiber-Reinforced Ceramic-Matrix Composites

Science.gov (United States)

Longbiao, Li

2015-12-01

An analytical methodology has been developed to investigate the effect of fiber Poisson contraction on matrix multicracking evolution of fiber-reinforced ceramic-matrix composites (CMCs). The modified shear-lag model incorporated with the Coulomb friction law is adopted to solve the stress distribution in the interface slip region and intact region of the damaged composite. The critical matrix strain energy criterion which presupposes the existence of an ultimate or critical strain energy limit beyond which the matrix fails has been adopted to describe matrix multicracking of CMCs. As more energy is placed into the composite, matrix fractures and the interface debonding occurs to dissipate the extra energy. The interface debonded length under the process of matrix multicracking is obtained by treating the interface debonding as a particular crack propagation problem along the fiber/matrix interface. The effects of the interfacial frictional coefficient, fiber Poisson ratio, fiber volume fraction, interface debonded energy and cycle number on the interface debonding and matrix multicracking evolution have been analyzed. The theoretical results are compared with experimental data of unidirectional SiC/CAS, SiC/CAS-II and SiC/Borosilicate composites.

EISPACK, Subroutines for Eigenvalues, Eigenvectors, Matrix Operations

International Nuclear Information System (INIS)

Garbow, Burton S.; Cline, A.K.; Meyering, J.

1993-01-01

1 - Description of problem or function: EISPACK3 is a collection of 75 FORTRAN subroutines, both single- and double-precision, that compute the eigenvalues and eigenvectors of nine classes of matrices. The package can determine the Eigen-system of complex general, complex Hermitian, real general, real symmetric, real symmetric band, real symmetric tridiagonal, special real tridiagonal, generalized real, and generalized real symmetric matrices. In addition, there are two routines which use the singular value decomposition to solve certain least squares problem. The individual subroutines are - Identification/Description: BAKVEC: Back transform vectors of matrix formed by FIGI; BALANC: Balance a real general matrix; BALBAK: Back transform vectors of matrix formed by BALANC; BANDR: Reduce sym. band matrix to sym. tridiag. matrix; BANDV: Find some vectors of sym. band matrix; BISECT: Find some values of sym. tridiag. matrix; BQR: Find some values of sym. band matrix; CBABK2: Back transform vectors of matrix formed by CBAL; CBAL: Balance a complex general matrix; CDIV: Perform division of two complex quantities; CG: Driver subroutine for a complex general matrix; CH: Driver subroutine for a complex Hermitian matrix; CINVIT: Find some vectors of complex Hess. matrix; COMBAK: Back transform vectors of matrix formed by COMHES; COMHES: Reduce complex matrix to complex Hess. (elementary); COMLR: Find all values of complex Hess. matrix (LR); COMLR2: Find all values/vectors of cmplx Hess. matrix (LR); CCMQR: Find all values of complex Hessenberg matrix (QR); COMQR2: Find all values/vectors of cmplx Hess. matrix (QR); CORTB: Back transform vectors of matrix formed by CORTH; CORTH: Reduce complex matrix to complex Hess. (unitary); CSROOT: Find square root of complex quantity; ELMBAK: Back transform vectors of matrix formed by ELMHES; ELMHES: Reduce real matrix to real Hess. (elementary); ELTRAN: Accumulate transformations from ELMHES (for HQR2); EPSLON: Estimate unit roundoff

miR-21 may acts as an oncomir by targeting RECK, a matrix metalloproteinase regulator, in prostate cancer

Directory of Open Access Journals (Sweden)

Reis Sabrina

2012-05-01

Full Text Available Abstract Background Prognosis of prostate cancer (PCa is based mainly in histological aspects together with PSA serum levels that not always reflect the real aggressive potential of the neoplasia. The micro RNA (miRNA mir-21 has been shown to regulate invasiveness in cancer through translational repression of the Metaloproteinase (MMP inhibitor RECK. Our aim is to investigate the levels of expression of RECK and miR-21 in PCa comparing with classical prognostic factors and disease outcome and also test if RECK is a target of miR-21 in in vitro study using PCa cell line. Materials and methods To determine if RECK is a target of miR-21 in prostate cancer we performed an in vitro assay with PCa cell line DU-145 transfected with pre-miR-21 and anti-miR-21. To determine miR-21 and RECK expression levels in PCa samples we performed quantitative real-time polymerase chain reaction (qRT-PCR. Results The in vitro assays showed a decrease in expression levels of RECK after transfection with pre-miR-21, and an increase of MMP9 that is regulated by RECK compared to PCa cells treated with anti-miR-21. We defined three profiles to compare the prognostic factors. The first was characterized by miR-21 and RECK underexpression (N = 25 the second was characterized by miR-21 overexpression and RECK underexpression (N = 12, and the third was characterized by miR-21 underexpression and RECK overexpression (N = 16. From men who presented the second profile (miR-21 overexpression and RECK underexpression 91.7% were staged pT3. For the other two groups 48.0%, and 46.7% of patients were staged pT3 (p = 0.025. Conclusions Our results demonstrate RECK as a target of miR-21. We believe that miR-21 may be important in PCa progression through its regulation of RECK, a known regulator of tumor cell invasion.

Regulation of matrix metalloproteinase-9 expression between gingival fibroblast cells from old and young rats

International Nuclear Information System (INIS)

Kim, Su-Jung; Chung, Yong-Koo; Chung, Tae-Wook; Kim, Jeong-Ran; Moon, Sung-Kwon; Kim, Cheorl-Ho; Park, Young-Guk

2009-01-01

Gingival fibroblast cells (rGF) from aged rats have an age-related decline in proliferative capacity compared with young rats. We investigated G1 phase cell cycle regulation and MMP-9 expression in both young and aged rGF. G1 cell cycle protein levels and activity were significantly reduced in response to interleukin-1β (IL-1β) stimulation with increasing in vitro age. Tumor necrosis factor-α (TNF-α)-induced matrix metalloproteinase-9 (MMP-9) expression was also decreased in aged rGF in comparison with young rGF. Mutational analysis and gel shift assays demonstrated that the lower MMP-9 expression in aged rGF is associated with lower activities of transcription factors NF-κB and AP-1. These results suggest that cell cycle dysregulation and down-regulation of MMP-9 expression in rGF may play a role in gingival remodeling during in vitro aging.

Visual Working Memory and Perception Speed of 3- to 6-Year-Old Children Tested with a Matrix Film Battery Test

Science.gov (United States)

Pittorf, Martin L.; Lehmann, Wolfgang; Huckauf, Anke

2014-01-01

In this study the visual working memory (VWM) and perception speed of 60 children between the ages of three and six years were tested with an age-based, easy-to-handle Matrix Film Battery Test (reliability R?=?0.71). It was thereby affirmed that the VWM is age dependent (correlation coefficient r?=?0.66***) as expected. Furthermore, a significant…

Matrix algebra for linear models

CERN Document Server

Gruber, Marvin H J

2013-01-01

Matrix methods have evolved from a tool for expressing statistical problems to an indispensable part of the development, understanding, and use of various types of complex statistical analyses. This evolution has made matrix methods a vital part of statistical education. Traditionally, matrix methods are taught in courses on everything from regression analysis to stochastic processes, thus creating a fractured view of the topic. Matrix Algebra for Linear Models offers readers a unique, unified view of matrix analysis theory (where and when necessary), methods, and their applications. Written f

Viability of inert matrix fuel in reducing plutonium amounts in reactors

International Nuclear Information System (INIS)

2006-08-01

Reactors worldwide have produced more than 2000 tonnes of plutonium, contained in spent fuel or as separated forms through reprocessing. Disposition of fissile materials has become a primary concern of nuclear non-proliferation efforts. There is a significant interest in IAEA Member States to develop proliferation resistant nuclear fuel cycles for incineration of plutonium such as inert matrix fuels (IMFs). The present report summarises R and D work on inert matrix fuel for plutonium and (to a lesser extent) minor actinide stock-pile reduction, and discusses the possible strategies to include inert matrix fuel approaches to the nuclear fuel cycle. The publication reviews the status of potential IMF candidates and describes several identified candidate materials for both fast and thermal reactors: MgO, ZrO2, SiC, Zr alloy, SiAl, ZrN; some of these have undergone test irradiations and post-irradiation examination. Also discussed are modelling of IMF fuel performance and safety analysis. System studies have identified strategies for both implementation of IMF fuel as homogeneous or heterogeneous phases, as assemblies or core loadings and in existing reactors in the shorter term, as well as in new reactors in the longer term

Triangularization of a Matrix

Indian Academy of Sciences (India)

Much of linear algebra is devoted to reducing a matrix (via similarity or unitary similarity) to another that has lots of zeros. The simplest such theorem is the Schur triangularization theorem. This says that every matrix is unitarily similar to an upper triangular matrix. Our aim here is to show that though it is very easy to prove it ...

P A M Dirac meets M G Krein: matrix orthogonal polynomials and Dirac's equation

Energy Technology Data Exchange (ETDEWEB)

Duran, Antonio J [Departamento de Analisis Matematico, Universidad de Sevilla, Apdo (PO BOX) 1160, 41080 Sevilla (Spain); Gruenbaum, F Alberto [Department of Mathematics, University of California, Berkeley, CA 94720 (United States)

2006-04-07

The solution of several instances of the Schroedinger equation (1926) is made possible by using the well-known orthogonal polynomials associated with the names of Hermite, Legendre and Laguerre. A relativistic alternative to this equation was proposed by Dirac (1928) involving differential operators with matrix coefficients. In 1949 Krein developed a theory of matrix-valued orthogonal polynomials without any reference to differential equations. In Duran A J (1997 Matrix inner product having a matrix symmetric second order differential operator Rocky Mt. J. Math. 27 585-600), one of us raised the question of determining instances of these matrix-valued polynomials going along with second order differential operators with matrix coefficients. In Duran A J and Gruenbaum F A (2004 Orthogonal matrix polynomials satisfying second order differential equations Int. Math. Res. Not. 10 461-84), we developed a method to produce such examples and observed that in certain cases there is a connection with the instance of Dirac's equation with a central potential. We observe that the case of the central Coulomb potential discussed in the physics literature in Darwin C G (1928 Proc. R. Soc. A 118 654), Nikiforov A F and Uvarov V B (1988 Special Functions of Mathematical Physics (Basle: Birkhauser) and Rose M E 1961 Relativistic Electron Theory (New York: Wiley)), and its solution, gives rise to a matrix weight function whose orthogonal polynomials solve a second order differential equation. To the best of our knowledge this is the first instance of a connection between the solution of the first order matrix equation of Dirac and the theory of matrix-valued orthogonal polynomials initiated by M G Krein.

Emergent gravity and noncommutative branes from Yang-Mills matrix models

International Nuclear Information System (INIS)

Steinacker, Harold

2009-01-01

The framework of emergent gravity arising from Yang-Mills matrix models is developed further, for general noncommutative branes embedded in R D . The effective metric on the brane turns out to have a universal form reminiscent of the open string metric, depending on the dynamical Poisson structure and the embedding metric in R D . A covariant form of the tree-level equations of motion is derived, and the Newtonian limit is discussed. This points to the necessity of branes in higher dimensions. The quantization is discussed qualitatively, which singles out the IKKT model as a prime candidate for a quantum theory of gravity coupled to matter. The Planck scale is then identified with the scale of N=4 SUSY breaking. A mechanism for avoiding the cosmological constant problem is exhibited

Experimental study on mechanical behavior of fiber/matrix interface in metal matrix composite

International Nuclear Information System (INIS)

Wang, Q.; Chiang, F.P.

1994-01-01

The technique SIEM(Speckle Interferometry with Electron Microscopy) was employed to quantitatively measure the deformation on the fiber/matrix interface in SCS-6/Ti-6-4 composite at a microscale level. The displacement field within the fiber/matrix interphase zone was determined by in-situ observation with sensitivity of 0.003(microm). The macro-mechanical properties were compared with micro-mechanical behavior. It is shown that the strength in the interphase zone is weaker than the matrix tensile strength. The deformation process can be characterized by the uniform deformation, interface strain concentration and debond, and matrix plastic deformation

An Efficient GPU General Sparse Matrix-Matrix Multiplication for Irregular Data

DEFF Research Database (Denmark)

Liu, Weifeng; Vinter, Brian

2014-01-01

General sparse matrix-matrix multiplication (SpGEMM) is a fundamental building block for numerous applications such as algebraic multigrid method, breadth first search and shortest path problem. Compared to other sparse BLAS routines, an efficient parallel SpGEMM algorithm has to handle extra...... irregularity from three aspects: (1) the number of the nonzero entries in the result sparse matrix is unknown in advance, (2) very expensive parallel insert operations at random positions in the result sparse matrix dominate the execution time, and (3) load balancing must account for sparse data in both input....... Load balancing builds on the number of the necessary arithmetic operations on the nonzero entries and is guaranteed in all stages. Compared with the state-of-the-art GPU SpGEMM methods in the CUSPARSE library and the CUSP library and the latest CPU SpGEMM method in the Intel Math Kernel Library, our...

Marketingova strategie HPhobby s.r.o.

OpenAIRE

Tegzová, Milena

2011-01-01

This thesis deals with the marketing strategy of the company HPhobby s.r.o., which is realising its activities only through the online store www.hphobby.cz. The aim is to analyze the company and its competitors and apply this data to marketing strategy focused on Internet marketing tools. The first chapter deals with the analysis of the company and its competitors, for this chapter the SWOT, PEST analysis and BCG matrix are used. The second chapter concerns the segmentation of the consumer, f...

Combinatorial matrix theory

CERN Document Server

Mitjana, Margarida

2018-01-01

This book contains the notes of the lectures delivered at an Advanced Course on Combinatorial Matrix Theory held at Centre de Recerca Matemàtica (CRM) in Barcelona. These notes correspond to five series of lectures. The first series is dedicated to the study of several matrix classes defined combinatorially, and was delivered by Richard A. Brualdi. The second one, given by Pauline van den Driessche, is concerned with the study of spectral properties of matrices with a given sign pattern. Dragan Stevanović delivered the third one, devoted to describing the spectral radius of a graph as a tool to provide bounds of parameters related with properties of a graph. The fourth lecture was delivered by Stephen Kirkland and is dedicated to the applications of the Group Inverse of the Laplacian matrix. The last one, given by Ángeles Carmona, focuses on boundary value problems on finite networks with special in-depth on the M-matrix inverse problem.

A survey of matrix theory and matrix inequalities

CERN Document Server

Marcus, Marvin

2010-01-01

Written for advanced undergraduate students, this highly regarded book presents an enormous amount of information in a concise and accessible format. Beginning with the assumption that the reader has never seen a matrix before, the authors go on to provide a survey of a substantial part of the field, including many areas of modern research interest.Part One of the book covers not only the standard ideas of matrix theory, but ones, as the authors state, ""that reflect our own prejudices,"" among them Kronecker products, compound and induced matrices, quadratic relations, permanents, incidence

Lepton-flavor universality violation in R K and {R}_{D{_{(\\ast )}}} from warped space

Science.gov (United States)

Megías, Eugenio; Quirós, Mariano; Salas, Lindber

2017-07-01

Some anomalies in the processes b → sℓℓ ( ℓ = μ, e) and b\\to cℓ {\\overline{ν}}_{ℓ } ( ℓ = τ, μ, e), in particular in the observables R K and {R}_{D{_{(\\ast )}}} , have been found by the BaBar, LHCb and Belle collaborations, leading to a possible lepton flavor universality violation. If these anomalies were confirmed they would inevitably lead to physics beyond the Standard Model. In this paper we try to accommodate the present anomalies in an extra dimensional theory, solving the naturalness problem of the Standard Model by means of a warped metric with a strong conformality violation near the infra-red brane. The R K anomaly can be accommodated provided that the left-handed bottom quark and muon lepton have some degree of compositeness in the dual theory. The theory is consistent with all electroweak and flavor observables, and with all direct searches of Kaluza-Klein electroweak gauge bosons and gluons. The fermion spectrum, and fermion mixing angles, can be reproduced by mostly elementary right-handed bottom quarks, and tau and muon leptons. Moreover the {R}_{D{_{(\\ast )}}} anomaly requires a strong degree of compositeness for the left-handed tau leptons, which turns out to be in tension with experimental data on the {g}_{τ_L}^Z coupling, possibly unless some degree of fine-tuning is introduced in the fixing of the CKM matrix.

Efficient sparse matrix-matrix multiplication for computing periodic responses by shooting method on Intel Xeon Phi

Science.gov (United States)

Stoykov, S.; Atanassov, E.; Margenov, S.

2016-10-01

Many of the scientific applications involve sparse or dense matrix operations, such as solving linear systems, matrix-matrix products, eigensolvers, etc. In what concerns structural nonlinear dynamics, the computations of periodic responses and the determination of stability of the solution are of primary interest. Shooting method iswidely used for obtaining periodic responses of nonlinear systems. The method involves simultaneously operations with sparse and dense matrices. One of the computationally expensive operations in the method is multiplication of sparse by dense matrices. In the current work, a new algorithm for sparse matrix by dense matrix products is presented. The algorithm takes into account the structure of the sparse matrix, which is obtained by space discretization of the nonlinear Mindlin's plate equation of motion by the finite element method. The algorithm is developed to use the vector engine of Intel Xeon Phi coprocessors. It is compared with the standard sparse matrix by dense matrix algorithm and the one developed by Intel MKL and it is shown that by considering the properties of the sparse matrix better algorithms can be developed.

Study of the nuclear-coulomb low-energy scattering parameters on the basis of the p-matrix approach

International Nuclear Information System (INIS)

Babenko, V.A.; Petrov, N.M.

1993-01-01

The P-matrix approach application to the description of two charged strongly interacting particles nuclear-Coulomb scattering parameters is considered. The nuclear-Coulomb scattering length and effective range explicit expressions in terms of the P-matrix parameters are found. The nuclear-Coulomb low-energy parameters expansions in powers of small parameter β ≡ R/a b , involving terms with big logarithms, are obtained. The nuclear-Coulomb scattering length and effective range for the square-well and the delta-shell short range potentials are found in an explicit form. (author). 21 refs

Modeling the formation of cell-matrix adhesions on a single 3D matrix fiber.

Science.gov (United States)

Escribano, J; Sánchez, M T; García-Aznar, J M

2015-11-07

Cell-matrix adhesions are crucial in different biological processes like tissue morphogenesis, cell motility, and extracellular matrix remodeling. These interactions that link cell cytoskeleton and matrix fibers are built through protein clutches, generally known as adhesion complexes. The adhesion formation process has been deeply studied in two-dimensional (2D) cases; however, the knowledge is limited for three-dimensional (3D) cases. In this work, we simulate different local extracellular matrix properties in order to unravel the fundamental mechanisms that regulate the formation of cell-matrix adhesions in 3D. We aim to study the mechanical interaction of these biological structures through a three dimensional discrete approach, reproducing the transmission pattern force between the cytoskeleton and a single extracellular matrix fiber. This numerical model provides a discrete analysis of the proteins involved including spatial distribution, interaction between them, and study of the different phenomena, such as protein clutches unbinding or protein unfolding. Copyright © 2015 Elsevier Ltd. All rights reserved.

Rewiring of an Epithelial Differentiation Factor, miR-203, to Inhibit Human Squamous Cell Carcinoma Metastasis

Directory of Open Access Journals (Sweden)

Nathan Benaich

2014-10-01

Full Text Available Summary: Metastatic colonization of distant organs underpins the majority of human-cancer-related deaths, including deaths from head and neck squamous cell carcinoma (HNSCC. We report that miR-203, a miRNA that triggers differentiation in multilayered epithelia, inhibits multiple postextravasation events during HNSCC lung metastasis. Inducible reactivation of miR-203 in already established lung metastases reduces the overall metastatic burden. Using an integrated approach, we reveal that miR-203 inhibits metastasis independently of its effects on differentiation. In vivo genetic reconstitution experiments show that miR-203 inhibits lung metastasis by suppressing the prometastatic activities of three factors involved in cytoskeletal dynamics (LASP1, extracellular matrix remodeling (SPARC, and cell metabolism (NUAK1. Expression of miR-203 and its downstream effectors correlates with HNSCC overall survival outcomes, indicating the therapeutic potential of targeting this signaling axis. : Benaich et al. have identified miR-203, a microRNA that triggers differentiation in multilayered epithelia, as an inhibitor of lung metastasis in head and neck squamous cell carcinoma (HNSCC cells. They show that miR-203 inhibits metastasis independently of its effects on differentiation. Rather, miR-203 suppresses the prometastatic activities of three factors involved in cytoskeletal dynamics (LASP1, extracellular matrix remodeling (SPARC, and cell metabolism (NUAK1. Expression of miR-203 and its downstream effectors correlates with survival in HNSCC patients.

Fibroblast growth factor receptor 4 regulates tumor invasion by coupling fibroblast growth factor signaling to extracellular matrix degradation

DEFF Research Database (Denmark)

Sugiyama, Nami; Varjosalo, Markku; Meller, Pipsa

2010-01-01

/stroma border and tumor invasion front. The strongest overall coexpression was found in prostate carcinoma. Studies with cultured prostate carcinoma cell lines showed that the FGFR4-R388 variant, which has previously been associated with poor cancer prognosis, increased MT1-MMP-dependent collagen invasion......Aberrant expression and polymorphism of fibroblast growth factor receptor 4 (FGFR4) has been linked to tumor progression and anticancer drug resistance. We describe here a novel mechanism of tumor progression by matrix degradation involving epithelial-to-mesenchymal transition in response...... to membrane-type 1 matrix metalloproteinase (MT1-MMP, MMP-14) induction at the edge of tumors expressing the FGFR4-R388 risk variant. Both FGFR4 and MT1-MMP were upregulated in tissue biopsies from several human cancer types including breast adenocarcinomas, where they were partially coexpressed at the tumor...

Dielectric matrix, dynamical matrix and phonon dispersion in hcp transition metal scandium

International Nuclear Information System (INIS)

Singh, Joginder; Singh, Natthi; Prakash, S.

1976-01-01

Complete dielectric matrix is evaluated for hcp transition metal scandium using the non-interacting s- and d-band model. The local field corrections which are consequence of the non-diagonal part of the dielectric matrix are calculated explicitly. The free electron approximation is used for the s-electrons and the simple tight-binding approximation is used for the d-electrons. The theory developed by Singh and others is used to invert the dielectric matrix and the explicit expressions for the dynamical matrix are obtained. The phonon dispersion relations are investigated by using the renormalized Animalu transition metal model potential (TMMP) for bare ion potential. The contribution due to non-central forces which arise due to local fields is found to be 20%. The results are found in resonably good agreement with the experimental values. (author)

Developing Learning Tool of Control System Engineering Using Matrix Laboratory Software Oriented on Industrial Needs

Science.gov (United States)

Isnur Haryudo, Subuh; Imam Agung, Achmad; Firmansyah, Rifqi

2018-04-01

The purpose of this research is to develop learning media of control technique using Matrix Laboratory software with industry requirement approach. Learning media serves as a tool for creating a better and effective teaching and learning situation because it can accelerate the learning process in order to enhance the quality of learning. Control Techniques using Matrix Laboratory software can enlarge the interest and attention of students, with real experience and can grow independent attitude. This research design refers to the use of research and development (R & D) methods that have been modified by multi-disciplinary team-based researchers. This research used Computer based learning method consisting of computer and Matrix Laboratory software which was integrated with props. Matrix Laboratory has the ability to visualize the theory and analysis of the Control System which is an integration of computing, visualization and programming which is easy to use. The result of this instructional media development is to use mathematical equations using Matrix Laboratory software on control system application with DC motor plant and PID (Proportional-Integral-Derivative). Considering that manufacturing in the field of Distributed Control systems (DCSs), Programmable Controllers (PLCs), and Microcontrollers (MCUs) use PID systems in production processes are widely used in industry.

CSF-1R as an inhibitor of apoptosis and promoter of proliferation, migration and invasion of canine mammary cancer cells

Science.gov (United States)

2013-01-01

Background Tumor-associated macrophages (TAMs) have high impact on the cancer development because they can facilitate matrix invasion, angiogenesis, and tumor cell motility. It gives cancer cells the capacity to invade normal tissues and metastasize. The signaling of colony-stimulating factor-1 receptor (CSF-1R) which is an important regulator of proliferation and differentiation of monocytes and macrophages regulates most of the tissue macrophages. However, CSF-1R is expressed also in breast epithelial tissue during some physiological stages i.g.: pregnancy and lactation. Its expression has been also detected in various cancers. Our previous study has showed the expression of CSF-1R in all examined canine mammary tumors. Moreover, it strongly correlated with grade of malignancy and ability to metastasis. This study was therefore designed to characterize the role of CSF-1R in canine mammary cancer cells proliferation, apoptosis, migration, and invasion. As far as we know, the study presented hereby is a pioneering experiment in this field of veterinary medicine. Results We showed that csf-1r silencing significantly increased apoptosis (Annexin V test), decreased proliferation (measured as Ki67 expression) and decreased migration (“wound healing” assay) of canine mammary cancer cells. Treatment of these cells with CSF-1 caused opposite effect. Moreover, csf-1r knock-down changed growth characteristics of highly invasive cell lines on Matrigel matrix, and significantly decreased the ability of these cells to invade matrix. CSF-1 treatment increased invasion of cancer cells. Conclusion The evidence of the expression and functional role of the CSF-1R in canine mammary cancer cells indicate that CSF-1R targeting may be a good therapeutic approach. PMID:23561040

Solidification of TRU wastes in a ceramic matrix

International Nuclear Information System (INIS)

Loida, A.; Schubert, G.

1991-01-01

Aluminumsilicate based ceramic materials have been evaluated as an alternative waste form for the incorporation of TRU wastes. These waste forms are free of water and - cannot generate hydrogen radiolyticly, - they show good compatibility between the compounds of the waste and the matrix, - they are resistent against aqueous solutions, heat and radiation. R and D-work has been performed to demonstrate the suitability of this waste form for the immobilization of TRU-wastes. Four kinds of original TRU-waste streams and a mixture of all of them have been immobilized by ceramization, using glove box and remote operation technique as well. Clay minerals, (kaolinite, bentonite) and reactive corundum were selected as ceramic raw materials (KAB 78) in an appropriate ratio yielding 78 wt% Al 2 O 3 and 22 wt%SiO 2 . The main process steps are (i) pretreatment of the liquid waste (concentration, denitration, neutralization, solid- liquid separation), (ii) mixing with ceramic raw materials and forming, (iii) heat treatment with T max. of 1300 0 C for 15 minutes. The waste load of the ceramic matrix has been increased gradually from 20 to 50, in some cases to 60 wt.%

Polychoric/Tetrachoric Matrix or Pearson Matrix? A methodological study

Directory of Open Access Journals (Sweden)

Dominguez Lara, Sergio Alexis

2014-04-01

Full Text Available The use of product-moment correlation of Pearson is common in most studies in factor analysis in psychology, but it is known that this statistic is only applicable when the variables related are in interval scale and normally distributed, and when are used in ordinal data may to produce a distorted correlation matrix . Thus is a suitable option using polychoric/tetrachoric matrices in item-level factor analysis when the items are in level measurement nominal or ordinal. The aim of this study was to show the differences in the KMO, Bartlett`s Test and Determinant of the Matrix, percentage of variance explained and factor loadings in depression trait scale of Depression Inventory Trait - State and the Neuroticism dimension of the short form of the Eysenck Personality Questionnaire -Revised, regarding the use of matrices polychoric/tetrachoric matrices and Pearson. These instruments was analyzed with different extraction methods (Maximum Likelihood, Minimum Rank Factor Analysis, Unweighted Least Squares and Principal Components, keeping constant the rotation method Promin were analyzed. Were observed differences regarding sample adequacy measures, as well as with respect to the explained variance and the factor loadings, for solutions having as polychoric/tetrachoric matrix. So it can be concluded that the polychoric / tetrachoric matrix give better results than Pearson matrices when it comes to item-level factor analysis using different methods.

Actinide transmutation using inert matrix fuels versus recycle in a low conversion fast burner reactor

Energy Technology Data Exchange (ETDEWEB)

Deinert, M.R.; Schneider, E.A.; Recktenwald, G.; Cady, K.B. [The Department of Mechanical Engineering, The University of Texas at Austin, 1 University Station, C2200, Austin, 78712 (United States)

2009-06-15

would require an infinite fuel residence time. In previous work we have shown that the amount of fluence required to achieve a unit of burnup in yttrium stabilized ZrO{sub 2} based IMF with 85 w/o zirconium oxide and 15 w/o minor actinides (MA) and plutonium increases dramatically beyond 750 MWd/kgIHM (75% burnup). In this paper we discuss the repository implications for recycle of actinides in LWR's using this type of IMF and compare this to actinide recycle in a low conversion fast burner reactor. We perform the analysis over a finite horizon of 100 years, in which reprocessing of spent LWR fuel begins in 2020. Reference [1] C. Lombardi and A. Mazzola, Exploiting the plutonium stockpiles in PWRs by using inert matrix fuel, Annals of Nuclear Energy. 23 (1996) 1117-1126. [2] U. Kasemeyer, J.M. Paratte, P. Grimm and R. Chawla, Comparison of pressurized water reactor core characteristics for 100% plutonium-containing loadings, Nuclear Technology. 122 (1998) 52-63. [3] G. Ledergerber, C. Degueldre, P. Heimgartner, M.A. Pouchon and U. Kasemeyer, Inert matrix fuel for the utilisation of plutonium, Progress in Nuclear Energy. 38 (2001) 301-308. [4] U. Kasemeyer, C. Hellwig, J. Lebenhaft and R. Chawla, Comparison of various partial light water reactor core loadings with inert matrix and mixed oxide fuel, Journal of Nuclear Materials. 319 (2003) 142-153. [5] E.A. Schneider, M.R. Deinert and K.B. Cady, Burnup simulations of an inert matrix fuel using a two region, multi-group reactor physics model, in Proceedings of the physics of advanced fuel cycles, PHYSOR 2006, Vancouver, BC, 2006. [6] E.A. Schneider, M.R. Deinert and K.B. Cady, Burnup simulations and spent fuel characteristics of ZRO{sub 2} based inert matrix fuels, Journal of Nuclear Materials. 361 (2007) 41-51. (authors)

ppcor: An R Package for a Fast Calculation to Semi-partial Correlation Coefficients.

Science.gov (United States)

Kim, Seongho

2015-11-01

Lack of a general matrix formula hampers implementation of the semi-partial correlation, also known as part correlation, to the higher-order coefficient. This is because the higher-order semi-partial correlation calculation using a recursive formula requires an enormous number of recursive calculations to obtain the correlation coefficients. To resolve this difficulty, we derive a general matrix formula of the semi-partial correlation for fast computation. The semi-partial correlations are then implemented on an R package ppcor along with the partial correlation. Owing to the general matrix formulas, users can readily calculate the coefficients of both partial and semi-partial correlations without computational burden. The package ppcor further provides users with the level of the statistical significance with its test statistic.

MatrixPlot: visualizing sequence constraints

DEFF Research Database (Denmark)

Gorodkin, Jan; Stærfeldt, Hans Henrik; Lund, Ole

1999-01-01

MatrixPlot: visualizing sequence constraints. Sub-title Abstract Summary : MatrixPlot is a program for making high-quality matrix plots, such as mutual information plots of sequence alignments and distance matrices of sequences with known three-dimensional coordinates. The user can add information...

Influence des déformations tectoniques sur les caractéristiques pétrophysiques matricielles des réservoirs calcaires Influence of Tectonic Deformation on the Petrophysical Matrix Properties of Limestone Reservoirs

Directory of Open Access Journals (Sweden)

Trémolières P.

2006-11-01

Full Text Available Cet article présente les principaux résultats d'une étude menée en commun par l'Institut Français du Pétrole (IFP et la Société Nationale Elf Aquitaine (Production (SNEA (P, étude qui avait pour but de rechercher l'influence des contraintes tectoniques sur les propriétés pétrophysiques matricielles des réservoirs calcaires. Ces travaux, ayant porté principalement surle Burdigalien des Alpilles (Provence et accessoirement sur le Turonien de Mareuil (Aquitaine et la « Scaglia bianca » du Monte Conero (Ancàne-Itatie, ont permis de mettre en évidence - des variations importantes de la porosité et de la perméabilité en fonction de la position structurale du matériau et, à plus petite échelle, de la courbure des couches; - un double processus de la réduction des porosité et perméabilité : soit par tassement mécanique, soit par cristallisation dans les pores d'une calcite provenant probablement d'une dissolution le long de joints stylolithiques d'origine tectonique. On montre enfin qu'en certaines zones particulières (dans les périclinaux ou à l'aplomb d'accidents profonds jouant en faille inverse les effets des contraintes tectoniques sur les qualités matricielles peuvent être très importants et survenir avant la structuration des couches par plissement. This article describes the main results of a joint Institut Français du Pétrole (IFP-Société Nationale Elf Aquitaine (Production (SNEA (P research project on the influence of tectonic stresses on thé petrophysical matrix properties of limestone reservoirs. Research mainly concentrated on the Burdigalien from the Alpilles mountains in ihe Provence région and accessorily on the Turonian from Mareuil in the Aquitaine region and Scaglia Bianca from Monte Conero in Anconia, Italy. The following findings were made: - considerable variations in porosity and permeability can be found, depending on the structural position of the material and, on a smaller scale, on the

Single-particle density matrix and superfluidity in the two-dimensional Bose Coulomb fluid

International Nuclear Information System (INIS)

Minguzzi, A.; Tosi, M.P.; Davoudi, B.

2002-01-01

A study by Magro and Ceperley [Phys. Rev. Lett. 73, 826 (1994)] has shown that the ground state of the two-dimensional fluid of charged bosons with logarithmic interactions is not Bose condensed, but exhibits algebraic off-diagonal order in the single-particle density matrix ρ(r). We use a hydrodynamic Hamiltonian expressed in terms of density and phase operators, in combination with an f-sum rule on the superfluid fraction, to reproduce these results and to extend the evaluation of the density matrix to finite temperature T. This approach allows us to treat the liquid as a superfluid in the absence of a condensate. The algebraic decay of the one-body density matrix is due to correlations between phase fluctuations, and we find that the exponent in the power law is determined by the superfluid density n s (T). We also find that the plasmon gap in the single-particle energy spectrum at long wavelengths decreases with increasing T and closes at the critical temperature for the onset of superfluidity

Extracellular matrix protein fibulin-1 plasma levels are associated with increased cardiovascular risk in chronic kidney disease

DEFF Research Database (Denmark)

Scholze, Alexandra

INTRODUCTION AND AIMS: Fibulin-1 is one of the few extracellular matrix proteins present in blood in high concentrations. We aimed to define the relationship between plasma fibulin-1 levels and risk markers of cardiovascular disease in patients with chronic kidney disease. METHODS: Plasma fibulin-1...... hemodynamic and arterial stiffness indices. RESULTS: We observed a positive correlation of fibulin-1 levels with age (r=0.38; p=0.033), glycated hemoglobin (r=0.80; p=0.003), creatinine (r=0.35; p=0.045), and fibrinogen (r=0.39; p=0.027). Glomerular filtration rate and fibulin-1 were inversely correlated (r......=-0.57; p=0.022). There was a positive correlation between fibulin-1 and central pulse pressure (r=0.44; p=0.011) and central augmentation pressure (r=0.55; p=0.001). In a multivariable regression model, diabetes, creatinine, fibrinogen and central augmentation pressure were independent predictors...

q-Virasoro constraints in matrix models

Energy Technology Data Exchange (ETDEWEB)

Nedelin, Anton [Dipartimento di Fisica, Università di Milano-Bicocca and INFN, sezione di Milano-Bicocca, Piazza della Scienza 3, I-20126 Milano (Italy); Department of Physics and Astronomy, Uppsala university,Box 516, SE-75120 Uppsala (Sweden); Zabzine, Maxim [Department of Physics and Astronomy, Uppsala university,Box 516, SE-75120 Uppsala (Sweden)

2017-03-20

The Virasoro constraints play the important role in the study of matrix models and in understanding of the relation between matrix models and CFTs. Recently the localization calculations in supersymmetric gauge theories produced new families of matrix models and we have very limited knowledge about these matrix models. We concentrate on elliptic generalization of hermitian matrix model which corresponds to calculation of partition function on S{sup 3}×S{sup 1} for vector multiplet. We derive the q-Virasoro constraints for this matrix model. We also observe some interesting algebraic properties of the q-Virasoro algebra.

A Comparison on Gas Separation between PES(polyethersulfone)/MMT (Na-montmorillonite) and PES/TiO2 Mixed Matrix Membranes

Czech Academy of Sciences Publication Activity Database

Liang, Ch.-Y.; Uchytil, Petr; Petričkovič, Roman; Lai, Y.-Ch.; Friess, K.; Šípek, M.; Reddy, M.M.; Suen, S.-Y.

2012-01-01

Roč. 92, MAY 18 (2012), s. 57-63 ISSN 1383-5866 R&D Projects: GA ČR GCP106/10/J038 Grant - others:NSCT(TW) NSC:99-2911-I-005-002; NSCT(TW) NSC:99-2923-E-005-001-MY2 Institutional research plan: CEZ:AV0Z40720504 Keywords : mixed matrix membrane * polyethersulfone membrane * sodium montmorillonite Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 2.894, year: 2012

La double répétition

Directory of Open Access Journals (Sweden)

Guillaume Soulez

2011-04-01

Full Text Available Cet article défend l'idée que la sérialité, trop souvent étudiée d'un seul point de vue, repose en réalité sur une double répétition. On peut distinguer en effet la matrice d'une série de sa structure et envisager un autre modèle de la répétition, plus heuristique. On se propose alors de distinguer ces deux dimensions pour mieux penser leur fonctionnement (les règles de lecture et leur articulation productive (la production d'objets à la fois répétitifs et singuliers, de Columbo aux Soprano, en passant par Le Caméléon.This paper argues that serialization, too often considered through a single point of view, is actually based on a double repetition. One can distinguish the matrix of a series from its structure and consider an alternative model of repetition, more heuristic. It then proposes to distinguish these two dimensions in order to get a better understanding of the functioning (the rules of reading and the productive articulation of series (production of items both repetitive and unique, especially through the analysis of Columbo, The Sopranos and The Pretender.

Matrix thermalization

International Nuclear Information System (INIS)

Craps, Ben; Evnin, Oleg; Nguyen, Kévin

2017-01-01

Matrix quantum mechanics offers an attractive environment for discussing gravitational holography, in which both sides of the holographic duality are well-defined. Similarly to higher-dimensional implementations of holography, collapsing shell solutions in the gravitational bulk correspond in this setting to thermalization processes in the dual quantum mechanical theory. We construct an explicit, fully nonlinear supergravity solution describing a generic collapsing dilaton shell, specify the holographic renormalization prescriptions necessary for computing the relevant boundary observables, and apply them to evaluating thermalizing two-point correlation functions in the dual matrix theory.

Matrix thermalization

Science.gov (United States)

Craps, Ben; Evnin, Oleg; Nguyen, Kévin

2017-02-01

Matrix quantum mechanics offers an attractive environment for discussing gravitational holography, in which both sides of the holographic duality are well-defined. Similarly to higher-dimensional implementations of holography, collapsing shell solutions in the gravitational bulk correspond in this setting to thermalization processes in the dual quantum mechanical theory. We construct an explicit, fully nonlinear supergravity solution describing a generic collapsing dilaton shell, specify the holographic renormalization prescriptions necessary for computing the relevant boundary observables, and apply them to evaluating thermalizing two-point correlation functions in the dual matrix theory.

Matrix thermalization

Energy Technology Data Exchange (ETDEWEB)

Craps, Ben [Theoretische Natuurkunde, Vrije Universiteit Brussel (VUB), and International Solvay Institutes, Pleinlaan 2, B-1050 Brussels (Belgium); Evnin, Oleg [Department of Physics, Faculty of Science, Chulalongkorn University, Thanon Phayathai, Pathumwan, Bangkok 10330 (Thailand); Theoretische Natuurkunde, Vrije Universiteit Brussel (VUB), and International Solvay Institutes, Pleinlaan 2, B-1050 Brussels (Belgium); Nguyen, Kévin [Theoretische Natuurkunde, Vrije Universiteit Brussel (VUB), and International Solvay Institutes, Pleinlaan 2, B-1050 Brussels (Belgium)

2017-02-08

Matrix quantum mechanics offers an attractive environment for discussing gravitational holography, in which both sides of the holographic duality are well-defined. Similarly to higher-dimensional implementations of holography, collapsing shell solutions in the gravitational bulk correspond in this setting to thermalization processes in the dual quantum mechanical theory. We construct an explicit, fully nonlinear supergravity solution describing a generic collapsing dilaton shell, specify the holographic renormalization prescriptions necessary for computing the relevant boundary observables, and apply them to evaluating thermalizing two-point correlation functions in the dual matrix theory.

Opposing roles of miR-21 and miR-29 in the progression of fibrosis in Duchenne muscular dystrophy.

Science.gov (United States)

Zanotti, Simona; Gibertini, Sara; Curcio, Maurizio; Savadori, Paolo; Pasanisi, Barbara; Morandi, Lucia; Cornelio, Ferdinando; Mantegazza, Renato; Mora, Marina

2015-07-01

Excessive extracellular matrix deposition progressively replacing muscle fibres is the endpoint of most severe muscle diseases. Recent data indicate major involvement of microRNAs in regulating pro- and anti-fibrotic genes. To investigate the roles of miR-21 and miR-29 in muscle fibrosis in Duchenne muscle dystrophy, we evaluated their expression in muscle biopsies from 14 patients, and in muscle-derived fibroblasts and myoblasts. In Duchenne muscle biopsies, miR-21 expression was significantly increased, and correlated directly with COL1A1 and COL6A1 transcript levels. MiR-21 expression was also significantly increased in Duchenne fibroblasts, more so after TGF-β1 treatment. In Duchenne fibroblasts the expression of miR-21 target transcripts PTEN (phosphatase and tensin homolog deleted on chromosome 10) and SPRY-1 (Sprouty homolog 1) was significantly reduced; while collagen I and VI transcript levels and soluble collagen production were significantly increased. MiR-29a and miR-29c were significantly reduced in Duchenne muscle and myoblasts, and miR-29 target transcripts, COL3A1, FBN1 and YY1, significantly increased. MiR-21 silencing in mdx mice reduced fibrosis in the diaphragm muscle and in both Duchenne fibroblasts and mdx mice restored PTEN and SPRY-1 expression, and significantly reduced collagen I and VI expression; while miR-29 mimicking in Duchenne myoblasts significantly decreased miR-29 target transcripts. These findings indicate that miR-21 and miR-29 play opposing roles in Duchenne muscle fibrosis and suggest that pharmacological modulation of their expression has therapeutic potential for reducing fibrosis in this condition. Copyright © 2015. Published by Elsevier B.V.

Integrins and extracellular matrix in mechanotransduction

Directory of Open Access Journals (Sweden)

Ramage L

2011-12-01

Full Text Available Lindsay RamageQueen’s Medical Research Institute, University of Edinburgh, Edinburgh, UKAbstract: Integrins are a family of cell surface receptors which mediate cell–matrix and cell–cell adhesions. Among other functions they provide an important mechanical link between the cells external and intracellular environments while the adhesions that they form also have critical roles in cellular signal-transduction. Cell–matrix contacts occur at zones in the cell surface where adhesion receptors cluster and when activated the receptors bind to ligands in the extracellular matrix. The extracellular matrix surrounds the cells of tissues and forms the structural support of tissue which is particularly important in connective tissues. Cells attach to the extracellular matrix through specific cell-surface receptors and molecules including integrins and transmembrane proteoglycans. Integrins work alongside other proteins such as cadherins, immunoglobulin superfamily cell adhesion molecules, selectins, and syndecans to mediate cell–cell and cell–matrix interactions and communication. Activation of adhesion receptors triggers the formation of matrix contacts in which bound matrix components, adhesion receptors, and associated intracellular cytoskeletal and signaling molecules form large functional, localized multiprotein complexes. Cell–matrix contacts are important in a variety of different cell and tissue properties including embryonic development, inflammatory responses, wound healing, and adult tissue homeostasis. This review summarizes the roles and functions of integrins and extracellular matrix proteins in mechanotransduction.Keywords: ligand binding, α subunit, ß subunit, focal adhesion, cell differentiation, mechanical loading, cell–matrix interaction

The R software fundamentals of programming and statistical analysis

CERN Document Server

Lafaye de Micheaux, Pierre; Liquet, Benoit

2013-01-01

The contents of The R Software are presented so as to be both comprehensive and easy for the reader to use. Besides its application as a self-learning text, this book can support lectures on R at any level from beginner to advanced. This book can serve as a textbook on R for beginners as well as more advanced users, working on Windows, MacOs or Linux OSes. The first part of the book deals with the heart of the R language and its fundamental concepts, including data organization, import and export, various manipulations, documentation, plots, programming and maintenance.  The last chapter in this part deals with oriented object programming as well as interfacing R with C/C++ or Fortran, and contains a section on debugging techniques. This is followed by the second part of the book, which provides detailed explanations on how to perform many standard statistical analyses, mainly in the Biostatistics field. Topics from mathematical and statistical settings that are included are matrix operations, integration, o...

Dentin matrix degradation by host Matrix Metalloproteinases: inhibition and clinical perspectives towards regeneration.

Directory of Open Access Journals (Sweden)

Catherine eChaussain

2013-11-01

Full Text Available Bacterial enzymes have long been considered solely accountable for the degradation of the dentin matrix during the carious process. However, the emerging literature suggests that host-derived enzymes, and in particular the matrix metalloproteinases (MMPs contained in dentin and saliva can play a major role in this process by their ability to degrade the dentin matrix from within. These findings are important since they open new therapeutic options for caries prevention and treatment. The possibility of using MMP inhibitors to interfere with dentin caries progression is discussed. Furthermore, the potential release of bioactive peptides by the enzymatic cleavage of dentin matrix proteins by MMPs during the carious process is discussed. These peptides, once identified, may constitute promising therapeutical tools for tooth and bone regeneration.

Hartree--Fock density matrix equation

International Nuclear Information System (INIS)

Cohen, L.; Frishberg, C.

1976-01-01

An equation for the Hartree--Fock density matrix is discussed and the possibility of solving this equation directly for the density matrix instead of solving the Hartree--Fock equation for orbitals is considered. Toward that end the density matrix is expanded in a finite basis to obtain the matrix representative equation. The closed shell case is considered. Two numerical schemes are developed and applied to a number of examples. One example is given where the standard orbital method does not converge while the method presented here does

Long noncoding RNA TUG1 alleviates extracellular matrix accumulation via mediating microRNA-377 targeting of PPARγ in diabetic nephropathy.

Science.gov (United States)

Duan, Li-Jun; Ding, Min; Hou, Li-Jun; Cui, Yuan-Tao; Li, Chun-Jun; Yu, De-Min

2017-03-11

Long noncoding RNA taurine-upregulated gene 1 (lncRNA TUG1) has been reported to play a key role in the progression of diabetic nephropathy (DN). However, the role of lncRNA TUG1 in the regulation of diabetic nephropathy remains largely unknown. The aim of the present study is to identify the regulation of lncRNA TUG1 on extracellular matrix accumulation via mediating microRNA-377 targeting of PPARγ, and investigate the underlying mechanisms in progression of DN. Microarray was performed to screen differentially expressed miRNAs in db/db DN mice. Afterwards, computational prediction programs (TargetScan, miRanda, PicTar and miRGen) was applied to predict the target gene of miRNAs. The complementary binding of miRNA and lncRNA was assessed by luciferase assays. Protein and mRNA expression were detected by western blot and real time quantitate PCR. MiRNA-377 was screened by miRNA microarray and differentially up-regulated in db/db DN mice. PPARγ was predicted to be the target of miR-377 and the prediction was verified by luciferase assays. Expression of miR-377 was up-regulated in mesangial cell treated with high glucose (25 mM), and overexpression of miR-377 inhibited PPARγ expression and promoted PAI-1 and TGF-β1 expression. The expression of TUG1 antagonized the effect of miR-377 on the downregulation of its target PPARγ and inhibited extracellular matrix accumulation, including PAI-1, TGF-β1, fibronectin (FN) and collagen IV (Col IV), induced by high glucose. LncRNA TUG1 acts as an endogenous sponge of miR-377 and downregulates miR-377 expression levels, and thereby relieving the inhibition of its target gene PPARγ and alleviates extracellular matrix accumulation of mesangial cells, which provides a novel insight of diabetic nephropathy pathogenesis. Copyright © 2017 Elsevier Inc. All rights reserved.

Hacking the Matrix.

Science.gov (United States)

Czerwinski, Michael; Spence, Jason R

2017-01-05

Recently in Nature, Gjorevski et al. (2016) describe a fully defined synthetic hydrogel that mimics the extracellular matrix to support in vitro growth of intestinal stem cells and organoids. The hydrogel allows exquisite control over the chemical and physical in vitro niche and enables identification of regulatory properties of the matrix. Copyright © 2017 Elsevier Inc. All rights reserved.

Matrix interdiction problem

Energy Technology Data Exchange (ETDEWEB)

Pan, Feng [Los Alamos National Laboratory; Kasiviswanathan, Shiva [Los Alamos National Laboratory

2010-01-01

In the matrix interdiction problem, a real-valued matrix and an integer k is given. The objective is to remove k columns such that the sum over all rows of the maximum entry in each row is minimized. This combinatorial problem is closely related to bipartite network interdiction problem which can be applied to prioritize the border checkpoints in order to minimize the probability that an adversary can successfully cross the border. After introducing the matrix interdiction problem, we will prove the problem is NP-hard, and even NP-hard to approximate with an additive n{gamma} factor for a fixed constant {gamma}. We also present an algorithm for this problem that achieves a factor of (n-k) mUltiplicative approximation ratio.

Fabrication of BN Nanosheet Reinforced ZrO{sub 2} Composite Pellets for Inert Matrix Fuel

Energy Technology Data Exchange (ETDEWEB)

Shukeir, Malik; Umer, Malik; Lee, Bin; Ryu, Ho Jin [Korea Advanced Institute of Science and Technology, Daejeon (Korea, Republic of)

2014-10-15

Plutonium also can be resulted from the dismantlement of nuclear weapons. This will result in the increase of the stockpile of plutonium. For that purpose many organizations are focusing their R-D work on the concept of Inert Matrix Fuel IMF, where a U-free matrix is used to eliminate the U-Pu conversion. R-D work was standardized around Zirconiabased IMF as a result of many screening and ranking studies performed on various candidates. Regardless of its outstanding radiation resistance, chemical stability and its high melting point, it has a very low thermal conductivity, which could be detrimental for the fuel matrix especially in case of accidents. A reinforcement phase could be used for the enhancement of the thermomechanical properties. Among many possible reinforcements, 2D structured nanosheets have emerged as an excellent candidate to enhance the thermal properties and mechanical properties simultaneously. In this approach Boron Nitride Nanosheets BNNS are used for that purpose. BNNS have a very low density, very high thermal conductivity, very high mechanical properties and high neutron absorption cross-section for Boron which is used frequently as a burnable poison. They have properties similar to graphene but they exhibit superior thermal stability in the oxide structure. Despite all the studies on other reinforcements, BNNS reinforced ZrO{sub 2} has not yet been reported. In this study, pure ZrO{sub 2} and partially stabilized Zirconia PSZ (using Yttria) ceramics are mixed with different volume fractions of BNNS.

Matrix transformations and sequence spaces

International Nuclear Information System (INIS)

Nanda, S.

1983-06-01

In most cases the most general linear operator from one sequence space into another is actually given by an infinite matrix and therefore the theory of matrix transformations has always been of great interest in the study of sequence spaces. The study of general theory of matrix transformations was motivated by the special results in summability theory. This paper is a review article which gives almost all known results on matrix transformations. This also suggests a number of open problems for further study and will be very useful for research workers. (author)

Study of electron-molecule collision via finite-element method and r-matrix propagation technique: Exact exchange

International Nuclear Information System (INIS)

Abdolsalami, F.; Abdolsalami, M.; Perez, L.; Gomez, P.

1995-01-01

The authors have applied the finite-element method to electron-molecule collision with the exchange effect implemented rigorously. All the calculations are done in the body-frame within the fixed-nuclei approximation, where the exact treatment of exchange as a nonlocal effect results in a set of coupled integro-differential equations. The method is applied to e-H 2 and e-N 2 scatterings and the cross sections obtained are in very good agreement with the corresponding results the authors have generated from the linear-algebraic approach. This confirms the significant difference observed between their results generated by linear-algebraic method and the previously published e-N 2 cross sections. Their studies show that the finite-element method is clearly superior to the linear-algebraic approach in both memory usage and CPU time especially for large systems such as e-N 2 . The system coefficient matrix obtained from the finite-element method is often sparse and smaller in size by a factor of 12 to 16, compared to the linear-algebraic technique. Moreover, the CPU time required to obtain stable results with the finite-element method is significantly smaller than the linear-algebraic approach for one incident electron energy. The usage of computer resources in the finite-element method can even be reduced much further when (1) scattering calculations involving multiple electron energies are performed in one computer run and (2) exchange, which is a short range effect, is approximated by a sparse matrix. 17 refs., 7 figs., 5 tabs

Matrix Metalloproteinase Enzyme Family

Directory of Open Access Journals (Sweden)

Ozlem Goruroglu Ozturk

2013-04-01

Full Text Available Matrix metalloproteinases play an important role in many biological processes such as embriogenesis, tissue remodeling, wound healing, and angiogenesis, and in some pathological conditions such as atherosclerosis, arthritis and cancer. Currently, 24 genes have been identified in humans that encode different groups of matrix metalloproteinase enzymes. This review discuss the members of the matrix metalloproteinase family and their substrate specificity, structure, function and the regulation of their enzyme activity by tissue inhibitors. [Archives Medical Review Journal 2013; 22(2.000: 209-220

Neutron dosimetry and spectrometry with Bonner spheres. Working out a log-normal reference matrix

International Nuclear Information System (INIS)

Zaborowski, Henrick.

1981-11-01

From the experimental and theoretical studies made upon the BONNER's spheres System with a I 6 Li(Eu) crystal and with a miniaturized 3 He counter we get the normalized energy response functions R*sub(i)(E). This normalization is obtained by the mathematization of the Resolution Function R*(i,E) in the Log-Normal distribution hypothesis to mono energetic neutrons given in April 1976 to the International Symposium on Californium 252. The fit of the Log-Normal Hypothesis with the experimental and Theoretical data is very satisfactory. The parameter's tabulated values allow a precise interpolation, at all energies between 0.4 eV and 15 MeV and for all spheres diameters between 2 and 12 inches, of the discretized R*sub(ij) Reference Matrix for the applications to neutron dosimetry and spectrometry [fr

Heisenberg spin-one chain in staggered magnetic field: A density matrix renormalization group study

International Nuclear Information System (INIS)

Jizhong Lou; Xi Dai; Shaojin Qin; Zhaobin Su; Lu Yu

1999-04-01

Using the density matrix renormalization group technique, we calculate numerically the low energy excitation spectrum and magnetization curve of the spin-1 antiferromagnetic chain in a staggered magnetic field, which is expected to describe the physics of R 2 BaNiO 5 (R ≠ Y) family below the Neel temperature of the magnetic rare-earth (R) sublattice. These results are valid in the entire range of the staggered field, and agree with those given by the non-linear σ model study for small fields, but differ from the latter for large fields. They are consistent with the available experimental data. The correlation functions for this model are also calculated. The transverse correlations display the anticipated exponential decay with shorter correlation length, while the longitudinal correlations show explicitly the induced staggered magnetization. (author)

A parallel algorithm for Hamiltonian matrix construction in electron-molecule collision calculations: MPI-SCATCI

Science.gov (United States)

Al-Refaie, Ahmed F.; Tennyson, Jonathan

2017-12-01

Construction and diagonalization of the Hamiltonian matrix is the rate-limiting step in most low-energy electron - molecule collision calculations. Tennyson (1996) implemented a novel algorithm for Hamiltonian construction which took advantage of the structure of the wavefunction in such calculations. This algorithm is re-engineered to make use of modern computer architectures and the use of appropriate diagonalizers is considered. Test calculations demonstrate that significant speed-ups can be gained using multiple CPUs. This opens the way to calculations which consider higher collision energies, larger molecules and / or more target states. The methodology, which is implemented as part of the UK molecular R-matrix codes (UKRMol and UKRMol+) can also be used for studies of bound molecular Rydberg states, photoionization and positron-molecule collisions.

Quantum mechanics in matrix form

CERN Document Server

Ludyk, Günter

2018-01-01

This book gives an introduction to quantum mechanics with the matrix method. Heisenberg's matrix mechanics is described in detail. The fundamental equations are derived by algebraic methods using matrix calculus. Only a brief description of Schrödinger's wave mechanics is given (in most books exclusively treated), to show their equivalence to Heisenberg's matrix  method. In the first part the historical development of Quantum theory by Planck, Bohr and Sommerfeld is sketched, followed by the ideas and methods of Heisenberg, Born and Jordan. Then Pauli's spin and exclusion principles are treated. Pauli's exclusion principle leads to the structure of atoms. Finally, Dirac´s relativistic quantum mechanics is shortly presented. Matrices and matrix equations are today easy to handle when implementing numerical algorithms using standard software as MAPLE and Mathematica.

Unified Singularity Modeling and Reconfiguration of 3rTPS Metamorphic Parallel Mechanisms with Parallel Constraint Screws

Directory of Open Access Journals (Sweden)

Yufeng Zhuang

2015-01-01

Full Text Available This paper presents a unified singularity modeling and reconfiguration analysis of variable topologies of a class of metamorphic parallel mechanisms with parallel constraint screws. The new parallel mechanisms consist of three reconfigurable rTPS limbs that have two working phases stemming from the reconfigurable Hooke (rT joint. While one phase has full mobility, the other supplies a constraint force to the platform. Based on these, the platform constraint screw systems show that the new metamorphic parallel mechanisms have four topologies by altering the limb phases with mobility change among 1R2T (one rotation with two translations, 2R2T, and 3R2T and mobility 6. Geometric conditions of the mechanism design are investigated with some special topologies illustrated considering the limb arrangement. Following this and the actuation scheme analysis, a unified Jacobian matrix is formed using screw theory to include the change between geometric constraints and actuation constraints in the topology reconfiguration. Various singular configurations are identified by analyzing screw dependency in the Jacobian matrix. The work in this paper provides basis for singularity-free workspace analysis and optimal design of the class of metamorphic parallel mechanisms with parallel constraint screws which shows simple geometric constraints with potential simple kinematics and dynamics properties.

Ellipsoids and matrix-valued valuations

OpenAIRE

Ludwig, Monika

2003-01-01

We obtain a classification of Borel measurable, GL(n) covariant, symmetric-matrix-valued valuations on the space of n-dimensional convex polytopes. The only ones turn out to be the moment matrix corresponding to the classical Legendre ellipsoid and the matrix corresponding to the ellipsoid recently discovered by E. Lutwak, D. Yang, and G. Zhang.

Minimal solution for inconsistent singular fuzzy matrix equations

Directory of Open Access Journals (Sweden)

M. Nikuie

2013-10-01

Full Text Available The fuzzy matrix equations $Ailde{X}=ilde{Y}$ is called a singular fuzzy matrix equations while the coefficients matrix of its equivalent crisp matrix equations be a singular matrix. The singular fuzzy matrix equations are divided into two parts: consistent singular matrix equations and inconsistent fuzzy matrix equations. In this paper, the inconsistent singular fuzzy matrix equations is studied and the effect of generalized inverses in finding minimal solution of an inconsistent singular fuzzy matrix equations are investigated.

Drawing a different picture with pencil lead as matrix-assisted laser desorption/ionization matrix for fullerene derivatives.

Science.gov (United States)

Nye, Leanne C; Hungerbühler, Hartmut; Drewello, Thomas

2018-02-01

Inspired by reports on the use of pencil lead as a matrix-assisted laser desorption/ionization matrix, paving the way towards matrix-free matrix-assisted laser desorption/ionization, the present investigation evaluates its usage with organic fullerene derivatives. Currently, this class of compounds is best analysed using the electron transfer matrix trans-2-[3-(4-tert-butylphenyl)-2-methyl-2-propenylidene] malononitrile (DCTB), which was employed as the standard here. The suitability of pencil lead was additionally compared to direct (i.e. no matrix) laser desorption/ionization-mass spectrometry. The use of (DCTB) was identified as the by far gentler method, producing spectra with abundant molecular ion signals and much reduced fragmentation. Analytically, pencil lead was found to be ineffective as a matrix, however, appears to be an extremely easy and inexpensive method for producing sodium and potassium adducts.

Simulations of Shor's algorithm using matrix product states

Science.gov (United States)

Wang, D. S.; Hill, Charles D.; Hollenberg, L. C. L.

2017-07-01

We show that under the matrix product state formalism the states produced in Shor's algorithm can be represented using O(\\max (4lr^2, 2^{2l})) space, where l is the number of bits in the number to factorise and r is the order and the solution to the related order-finding problem. The reduction in space compared to an amplitude formalism approach is significant, allowing simulations as large as 42 qubits to be run on a single processor with 32 GB RAM. This approach is readily adapted to a distributed memory environment, and we have simulated a 45-qubit case using 8 cores with 16 GB RAM in approximately 1 h.

Matrix groups for undergraduates

CERN Document Server

Tapp, Kristopher

2005-01-01

Matrix groups touch an enormous spectrum of the mathematical arena. This textbook brings them into the undergraduate curriculum. It makes an excellent one-semester course for students familiar with linear and abstract algebra and prepares them for a graduate course on Lie groups. Matrix Groups for Undergraduates is concrete and example-driven, with geometric motivation and rigorous proofs. The story begins and ends with the rotations of a globe. In between, the author combines rigor and intuition to describe basic objects of Lie theory: Lie algebras, matrix exponentiation, Lie brackets, and maximal tori.

Development of a Java Package for Matrix Programming

OpenAIRE

Lim, Ngee-Peng; Ling, Maurice HT; Lim, Shawn YC; Choi, Ji-Hee; Teo, Henry BK

2003-01-01

We had assembled a Java package, known as MatrixPak, of four classes for the purpose of numerical matrix computation. The classes are matrix, matrix_operations, StrToMatrix, and MatrixToStr; all of which are inherited from java.lang.Object class. Class matrix defines a matrix as a two-dimensional array of float types, and contains the following mathematical methods: transpose, adjoint, determinant, inverse, minor and cofactor. Class matrix_operations contains the following mathematical method...

A framework for general sparse matrix-matrix multiplication on GPUs and heterogeneous processors

DEFF Research Database (Denmark)

Liu, Weifeng; Vinter, Brian

2015-01-01

General sparse matrix-matrix multiplication (SpGEMM) is a fundamental building block for numerous applications such as algebraic multigrid method (AMG), breadth first search and shortest path problem. Compared to other sparse BLAS routines, an efficient parallel SpGEMM implementation has to handle...... extra irregularity from three aspects: (1) the number of nonzero entries in the resulting sparse matrix is unknown in advance, (2) very expensive parallel insert operations at random positions in the resulting sparse matrix dominate the execution time, and (3) load balancing must account for sparse data...... memory space and efficiently utilizes the very limited on-chip scratchpad memory. Parallel insert operations of the nonzero entries are implemented through the GPU merge path algorithm that is experimentally found to be the fastest GPU merge approach. Load balancing builds on the number of necessary...

An integrable counterpart of the D-AKNS soliton hierarchy from so(3,R)

International Nuclear Information System (INIS)

Ma, Wen-Xiu

2014-01-01

An integrable counterpart of the D-AKNS soliton hierarchy is generated from a matrix spectral problem associated with so(3,R). Hamiltonian structures of the resulting counterpart soliton hierarchy are furnished by using the trace identity, which yields its Liouville integrability. -- Highlights: •Use the Lie algebra so(3,R) to generate a counterpart of the D-AKNS soliton hierarchy. •Generate Hamiltonian structures depending potentials by the trace identity. •Obtain hierarchies of independent commuting symmetries and conserved densities.

Shell-model calculations of beta-decay rates for s- and r-process nucleosyntheses

International Nuclear Information System (INIS)

Takahashi, K.; Mathews, G.J.; Bloom, S.D.

1985-01-01

Examples of large-basis shell-model calculations of Gamow-Teller β-decay properties of specific interest in the astrophysical s- and r- processes are presented. Numerical results are given for: (1) the GT-matrix elements for the excited state decays of the unstable s-process nucleus 99 Tc; and (2) the GT-strength function for the neutron-rich nucleus 130 Cd, which lies on the r-process path. The results are discussed in conjunction with the astrophysics problems. 23 refs., 3 figs

Examining the Determinants of China’s Inward FDI Using Grey Matrix Relational Analysis Model

Directory of Open Access Journals (Sweden)

Hang JIANG

2017-12-01

Full Text Available Grey relational analysis (GRA model is an important part of grey system theory, which is used to ascertain the relational grade between an influential factor and the major behavior factor. Most of GRA models are mainly applied to the field in which the behavior factor and influential factor are the cross-sectional or time series data in a given system. However, owing to the panel data contains plenty information including individual and time characteristics, the traditional GRA model cannot be applied to panel data analysis. To overcome this drawback, the grey matrix relational analysis model is applied to measure the similarity of panel data from two dimensions of individual and time on the basis of the definition of the matrix sequence of a discrete data sequence. This paper examines the determinants of inward foreign direct investment (IFDI in China using grey matrix relational analysis model. The study finds that the GDP per capita, enrollment of regular institutions of higher education, and internal expenditure on R&D are the key factors of IFDI.

Population matrix models and palm resource management

Directory of Open Access Journals (Sweden)

1992-01-01

Full Text Available MATRICES DE POPULATIONS ET MISE EN VALEUR DES PALMIERS. Au cours des 20 dernières années, les structures de population de nombreuses espèces de palmiers ont été décrites et discutées. La croissance et la stabilité des populations ont été analysées à l’aide de matrices. Dans cet article, nous reprenons un modèle et en discutons les aspects méthodologiques en vue d’une estimation des paramètres de l’histoire de la vie des palmiers. Les généralisations résultant de précédentes études sont présentées et les conséquences pour la mise en valeur des palmiers, concernant en particulier la confection de toitures, les fruits, la récolte des stipes, sont discutées. MATRICES DE POBLACIONES Y MANEJO DE PALMERAS. En los últimos 20 años, las estructuras de población de numerosas especies de palmeras han sido descritas y discutidas. El crecimiento y la estabilidad de las poblaciones han sido analizadas, utilizando matrices. En el presente artículo, presentamos un modelo y discutimos los aspectos metodológicos específicos para hacer una estimación de los parámetros de la historia de la vida de las palmeras. Son presentadas las generalizaciones diseñadas por estudios previos, y discutidas las implicancias en el manejo de las palmeras, en cuanto a techado, frutas, cosecha de los estípites. Population structures of numerous palm species have been described and discussed in the last 20 years. Population growth and stability have been analyzed with matrix models. In this paper we review matrix models and discuss methodological issues specific to estimating palm life history parameters. Generalizations drawn from previous studies are presented and implications for palm resource management, specifically for thatch, fruit, and stem harvest, are discussed.

Application of advanced light microscopic techniques to gain deeper insights into cheese matrix physico-chemistry

Czech Academy of Sciences Publication Activity Database

Burdikova, Z.; Svindrych, Z.; Hickey, C.; Wilkinson, M. G.; Auty, M. A. E.; Samek, Ota; Bernatová, Silvie; Krzyžánek, Vladislav; Periasamy, A.; Sheehan, J. J.

2015-01-01

Roč. 95, č. 5 (2015), s. 687-700 ISSN 1958-5586 R&D Projects: GA MŠk(CZ) LO1212; GA MŠk ED0017/01/01 Institutional support: RVO:68081731 Keywords : confocal microscopy * cheese matrix * fluorescence lifetime * second harmonic generation * two-photon excitation * confocal Raman microscopy Subject RIV: BH - Optics, Masers, Lasers Impact factor: 1.435, year: 2015

Factorisations for partition functions of random Hermitian matrix models

International Nuclear Information System (INIS)

Jackson, D.M.; Visentin, T.I.

1996-01-01

The partition function Z N , for Hermitian-complex matrix models can be expressed as an explicit integral over R N , where N is a positive integer. Such an integral also occurs in connection with random surfaces and models of two dimensional quantum gravity. We show that Z N can be expressed as the product of two partition functions, evaluated at translated arguments, for another model, giving an explicit connection between the two models. We also give an alternative computation of the partition function for the φ 4 -model.The approach is an algebraic one and holds for the functions regarded as formal power series in the appropriate ring. (orig.)

Matrix comparison, Part 2

DEFF Research Database (Denmark)

Schneider, Jesper Wiborg; Borlund, Pia

2007-01-01

The present two-part article introduces matrix comparison as a formal means for evaluation purposes in informetric studies such as cocitation analysis. In the first part, the motivation behind introducing matrix comparison to informetric studies, as well as two important issues influencing such c...

Omentin-1 prevents cartilage matrix destruction by regulating matrix metalloproteinases.

Science.gov (United States)

Li, Zhigang; Liu, Baoyi; Zhao, Dewei; Wang, BenJie; Liu, Yupeng; Zhang, Yao; Li, Borui; Tian, Fengde

2017-08-01

Matrix metalloproteinases (MMPs) play a crucial role in the degradation of the extracellular matrix and pathological progression of osteoarthritis (OA). Omentin-1 is a newly identified anti-inflammatory adipokine. Little information regarding the protective effects of omentin-1 in OA has been reported before. In the current study, our results indicated that omentin-1 suppressed expression of MMP-1, MMP-3, and MMP-13 induced by the proinflammatory cytokine interleukin-1β (IL-1β) at both the mRNA and protein levels in human chondrocytes. Importantly, administration of omentin-1 abolished IL-1β-induced degradation of type II collagen (Col II) and aggrecan, the two major extracellular matrix components in articular cartilage, in a dose-dependent manner. Mechanistically, omentin-1 ameliorated the expression of interferon regulatory factor 1 (IRF-1) by blocking the JAK-2/STAT3 pathway. Our results indicate that omentin-1 may have a potential chondroprotective therapeutic capacity. Copyright © 2017 Elsevier Masson SAS. All rights reserved.

Bulk metallic glass matrix composites

International Nuclear Information System (INIS)

Choi-Yim, H.; Johnson, W.L.

1997-01-01

Composites with a bulk metallic glass matrix were synthesized and characterized. This was made possible by the recent development of bulk metallic glasses that exhibit high resistance to crystallization in the undercooled liquid state. In this letter, experimental methods for processing metallic glass composites are introduced. Three different bulk metallic glass forming alloys were used as the matrix materials. Both ceramics and metals were introduced as reinforcement into the metallic glass. The metallic glass matrix remained amorphous after adding up to a 30 vol% fraction of particles or short wires. X-ray diffraction patterns of the composites show only peaks from the second phase particles superimposed on the broad diffuse maxima from the amorphous phase. Optical micrographs reveal uniformly distributed particles in the matrix. The glass transition of the amorphous matrix and the crystallization behavior of the composites were studied by calorimetric methods. copyright 1997 American Institute of Physics

A matrix model for WZW

International Nuclear Information System (INIS)

Dorey, Nick; Tong, David; Turner, Carl

2016-01-01

We study a U(N) gauged matrix quantum mechanics which, in the large N limit, is closely related to the chiral WZW conformal field theory. This manifests itself in two ways. First, we construct the left-moving Kac-Moody algebra from matrix degrees of freedom. Secondly, we compute the partition function of the matrix model in terms of Schur and Kostka polynomials and show that, in the large N limit, it coincides with the partition function of the WZW model. This same matrix model was recently shown to describe non-Abelian quantum Hall states and the relationship to the WZW model can be understood in this framework.

On Chern-Simons Matrix Models

CERN Document Server

Garoufalidis, S; Garoufalidis, Stavros; Marino, Marcos

2006-01-01

The contribution of reducible connections to the U(N) Chern-Simons invariant of a Seifert manifold $M$ can be expressed in some cases in terms of matrix integrals. We show that the U(N) evaluation of the LMO invariant of any rational homology sphere admits a matrix model representation which agrees with the Chern-Simons matrix integral for Seifert spheres and the trivial connection.

Characterization and control of the fiber-matrix interface in ceramic matrix composites

Energy Technology Data Exchange (ETDEWEB)

Lowden, R.A.

1989-03-01

Fiber-reinforced SiC composites fabricated by thermal-gradient forced-flow chemical-vapor infiltration (FCVI) have exhibited both composite (toughened) and brittle behavior during mechanical property evaluation. Detailed analysis of the fiber-matrix interface revealed that a silica layer on the surface of Nicalon Si-C-O fibers tightly bonds the fiber to the matrix. The strongly bonded fiber and matrix, combined with the reduction in the strength of the fibers that occurs during processing, resulted in the observed brittle behavior. The mechanical behavior of Nicalon/SiC composites has been improved by applying thin coatings (silicon carbide, boron, boron nitride, molybdenum, carbon) to the fibers, prior to densification, to control the interfacial bond. Varying degrees of bonding have been achieved with different coating materials and film thicknesses. Fiber-matrix bond strengths have been quantitatively evaluated using an indentation method and a simple tensile test. The effects of bonding and friction on the mechanical behavior of this composite system have been investigated. 167 refs., 59 figs., 18 tabs.

QUEUEING DISCIPLINES BASED ON PRIORITY MATRIX

Directory of Open Access Journals (Sweden)

Taufik I. Aliev

2014-11-01

Full Text Available The paper deals with queueing disciplines for demands of general type in queueing systems with multivendor load. A priority matrix is proposed to be used for the purpose of mathematical description of such disciplines, which represents the priority type (preemptive priority, not preemptive priority or no priority between any two demands classes. Having an intuitive and simple way of priority assignment, such description gives mathematical dependencies of system operation characteristics on its parameters. Requirements for priority matrix construction are formulated and the notion of canonical priority matrix is given. It is shown that not every matrix, constructed in accordance with such requirements, is correct. The notion of incorrect priority matrix is illustrated by an example, and it is shown that such matrixes do not ensure any unambiguousness and determinacy in design of algorithm, which realizes corresponding queueing discipline. Rules governing construction of correct matrixes are given for canonical priority matrixes. Residence time for demands of different classes in system, which is the sum of waiting time and service time, is considered as one of the most important characteristics. By introducing extra event method Laplace transforms for these characteristics are obtained, and mathematical dependencies are derived on their basis for calculation of two first moments for corresponding characteristics of demands queueing

One-body density matrix and the momentum density in 4He and 3He

International Nuclear Information System (INIS)

Whitlock, P.A.; Panoff, R.M.

1984-01-01

The one-body density matrix and the momentum density for liquid and solid 4 He, determined from Green's Function Monte Carlo calculations using the HFDHE2 pair potential, are described. Values for the condensate fraction and the kinetic energy derived from these calculations are given and compared to recent experimental results. Preliminary results from variational Monte Carlo calculations on n(r) and n(k) for liquid 3 He are also reported

Machining of Metal Matrix Composites

CERN Document Server

2012-01-01

Machining of Metal Matrix Composites provides the fundamentals and recent advances in the study of machining of metal matrix composites (MMCs). Each chapter is written by an international expert in this important field of research. Machining of Metal Matrix Composites gives the reader information on machining of MMCs with a special emphasis on aluminium matrix composites. Chapter 1 provides the mechanics and modelling of chip formation for traditional machining processes. Chapter 2 is dedicated to surface integrity when machining MMCs. Chapter 3 describes the machinability aspects of MMCs. Chapter 4 contains information on traditional machining processes and Chapter 5 is dedicated to the grinding of MMCs. Chapter 6 describes the dry cutting of MMCs with SiC particulate reinforcement. Finally, Chapter 7 is dedicated to computational methods and optimization in the machining of MMCs. Machining of Metal Matrix Composites can serve as a useful reference for academics, manufacturing and materials researchers, manu...

Unitarity of CKM Matrix

CERN Document Server

Saleem, M

2002-01-01

The Unitarity of the CKM matrix is examined in the light of the latest available accurate data. The analysis shows that a conclusive result cannot be derived at present. Only more precise data can determine whether the CKM matrix opens new vistas beyond the standard model or not.

2016 MATRIX annals

CERN Document Server

Praeger, Cheryl; Tao, Terence

2018-01-01

MATRIX is Australia’s international, residential mathematical research institute. It facilitates new collaborations and mathematical advances through intensive residential research programs, each lasting 1-4 weeks. This book is a scientific record of the five programs held at MATRIX in its first year, 2016: Higher Structures in Geometry and Physics (Chapters 1-5 and 18-21); Winter of Disconnectedness (Chapter 6 and 22-26); Approximation and Optimisation (Chapters 7-8); Refining C*-Algebraic Invariants for Dynamics using KK-theory (Chapters 9-13); Interactions between Topological Recursion, Modularity, Quantum Invariants and Low-dimensional Topology (Chapters 14-17 and 27). The MATRIX Scientific Committee selected these programs based on their scientific excellence and the participation rate of high-profile international participants. Each program included ample unstructured time to encourage collaborative research; some of the longer programs also included an embedded conference or lecture series. The artic...

Dynamic Matrix Rank

DEFF Research Database (Denmark)

Frandsen, Gudmund Skovbjerg; Frandsen, Peter Frands

2009-01-01

We consider maintaining information about the rank of a matrix under changes of the entries. For n×n matrices, we show an upper bound of O(n1.575) arithmetic operations and a lower bound of Ω(n) arithmetic operations per element change. The upper bound is valid when changing up to O(n0.575) entries...... in a single column of the matrix. We also give an algorithm that maintains the rank using O(n2) arithmetic operations per rank one update. These bounds appear to be the first nontrivial bounds for the problem. The upper bounds are valid for arbitrary fields, whereas the lower bound is valid for algebraically...... closed fields. The upper bound for element updates uses fast rectangular matrix multiplication, and the lower bound involves further development of an earlier technique for proving lower bounds for dynamic computation of rational functions....

MATLAB matrix algebra

CERN Document Server

Pérez López, César

2014-01-01

MATLAB is a high-level language and environment for numerical computation, visualization, and programming. Using MATLAB, you can analyze data, develop algorithms, and create models and applications. The language, tools, and built-in math functions enable you to explore multiple approaches and reach a solution faster than with spreadsheets or traditional programming languages, such as C/C++ or Java. MATLAB Matrix Algebra introduces you to the MATLAB language with practical hands-on instructions and results, allowing you to quickly achieve your goals. Starting with a look at symbolic and numeric variables, with an emphasis on vector and matrix variables, you will go on to examine functions and operations that support vectors and matrices as arguments, including those based on analytic parent functions. Computational methods for finding eigenvalues and eigenvectors of matrices are detailed, leading to various matrix decompositions. Applications such as change of bases, the classification of quadratic forms and ...

Diffusion of .sup.65./sup.Zn in AZ91 and QE22 alloys with Saffil reinforcement – Influence of interfaces matrix/Saffil

Czech Academy of Sciences Publication Activity Database

Stloukal, Ivo; Čermák, Jiří

289-292, - (2009), s. 145-152 ISSN 1012-0386. [DIMAT 2008, International Conference on Diffusion in Materials /7./. Lanzarote, Canary Islands , 28.10.2008-31.10.2008] R&D Projects: GA ČR GA106/05/2115 Institutional research plan: CEZ:AV0Z20410507 Keywords : magnesium * metal-matrix composites * zinc diffusion Subject RIV: BJ - Thermodynamics http://www.scientific.net/DDF.289-292.145/

Patience of matrix games

DEFF Research Database (Denmark)

Hansen, Kristoffer Arnsfelt; Ibsen-Jensen, Rasmus; Podolskii, Vladimir V.

2013-01-01

For matrix games we study how small nonzero probability must be used in optimal strategies. We show that for image win–lose–draw games (i.e. image matrix games) nonzero probabilities smaller than image are never needed. We also construct an explicit image win–lose game such that the unique optimal...

The Gene Expression of Human Endothelial Cells Is Modulated by Subendothelial Extracellular Matrix Proteins: Short-Term Response to Laminar Shear Stress

Czech Academy of Sciences Publication Activity Database

Chlupáč, Jaroslav; Filová, Elena; Havlíková, Jana; Matějka, R.; Riedel, Tomáš; Houska, Milan; Brynda, Eduard; Pamula, E.; Rémy, M.; Bareille, R.; Fernandez, P.; Daculsi, R.; Bourget, Ch.; Bačáková, Lucie; Bordenave, L.

2014-01-01

Roč. 20, 15-16 (2014), s. 2253-2264 ISSN 2152-4947 R&D Projects: GA ČR(CZ) GAP108/10/1106; GA ČR(CZ) GAP108/11/1857; GA ČR(CZ) GA305/08/0108; GA ČR GAP205/12/1702; GA MŠk(CZ) EE2.3.30.0029; GA MŠk(CZ) ED1.1.00/02.0109; GA MZd(CZ) NT11270 Grant - others:GA MŠk(CZ) Barrande 2005-06-036-1 Institutional support: RVO:67985823 ; RVO:61389013 Keywords : atherosclerosis * endothelial cells * extracellular matrix proteins * tissue engineering Subject RIV: EI - Biotechnology ; Bionics; CD - Macromolecular Chemistry (UMCH-V) Impact factor: 4.448, year: 2014

Optimized Projection Matrix for Compressive Sensing

Directory of Open Access Journals (Sweden)

Jianping Xu

2010-01-01

Full Text Available Compressive sensing (CS is mainly concerned with low-coherence pairs, since the number of samples needed to recover the signal is proportional to the mutual coherence between projection matrix and sparsifying matrix. Until now, papers on CS always assume the projection matrix to be a random matrix. In this paper, aiming at minimizing the mutual coherence, a method is proposed to optimize the projection matrix. This method is based on equiangular tight frame (ETF design because an ETF has minimum coherence. It is impossible to solve the problem exactly because of the complexity. Therefore, an alternating minimization type method is used to find a feasible solution. The optimally designed projection matrix can further reduce the necessary number of samples for recovery or improve the recovery accuracy. The proposed method demonstrates better performance than conventional optimization methods, which brings benefits to both basis pursuit and orthogonal matching pursuit.

Exchange-correlation energy from pairing matrix fluctuation and the particle-particle random phase approximation.

Science.gov (United States)

van Aggelen, Helen; Yang, Yang; Yang, Weitao

2014-05-14

Despite their unmatched success for many applications, commonly used local, semi-local, and hybrid density functionals still face challenges when it comes to describing long-range interactions, static correlation, and electron delocalization. Density functionals of both the occupied and virtual orbitals are able to address these problems. The particle-hole (ph-) Random Phase Approximation (RPA), a functional of occupied and virtual orbitals, has recently known a revival within the density functional theory community. Following up on an idea introduced in our recent communication [H. van Aggelen, Y. Yang, and W. Yang, Phys. Rev. A 88, 030501 (2013)], we formulate more general adiabatic connections for the correlation energy in terms of pairing matrix fluctuations described by the particle-particle (pp-) propagator. With numerical examples of the pp-RPA, the lowest-order approximation to the pp-propagator, we illustrate the potential of density functional approximations based on pairing matrix fluctuations. The pp-RPA is size-extensive, self-interaction free, fully anti-symmetric, describes the strong static correlation limit in H2, and eliminates delocalization errors in H2(+) and other single-bond systems. It gives surprisingly good non-bonded interaction energies--competitive with the ph-RPA--with the correct R(-6) asymptotic decay as a function of the separation R, which we argue is mainly attributable to its correct second-order energy term. While the pp-RPA tends to underestimate absolute correlation energies, it gives good relative energies: much better atomization energies than the ph-RPA, as it has no tendency to underbind, and reaction energies of similar quality. The adiabatic connection in terms of pairing matrix fluctuation paves the way for promising new density functional approximations.

Exchange-correlation energy from pairing matrix fluctuation and the particle-particle random phase approximation

International Nuclear Information System (INIS)

Aggelen, Helen van; Yang, Yang; Yang, Weitao

2014-01-01

Despite their unmatched success for many applications, commonly used local, semi-local, and hybrid density functionals still face challenges when it comes to describing long-range interactions, static correlation, and electron delocalization. Density functionals of both the occupied and virtual orbitals are able to address these problems. The particle-hole (ph-) Random Phase Approximation (RPA), a functional of occupied and virtual orbitals, has recently known a revival within the density functional theory community. Following up on an idea introduced in our recent communication [H. van Aggelen, Y. Yang, and W. Yang, Phys. Rev. A 88, 030501 (2013)], we formulate more general adiabatic connections for the correlation energy in terms of pairing matrix fluctuations described by the particle-particle (pp-) propagator. With numerical examples of the pp-RPA, the lowest-order approximation to the pp-propagator, we illustrate the potential of density functional approximations based on pairing matrix fluctuations. The pp-RPA is size-extensive, self-interaction free, fully anti-symmetric, describes the strong static correlation limit in H 2 , and eliminates delocalization errors in H 2 + and other single-bond systems. It gives surprisingly good non-bonded interaction energies – competitive with the ph-RPA – with the correct R −6 asymptotic decay as a function of the separation R, which we argue is mainly attributable to its correct second-order energy term. While the pp-RPA tends to underestimate absolute correlation energies, it gives good relative energies: much better atomization energies than the ph-RPA, as it has no tendency to underbind, and reaction energies of similar quality. The adiabatic connection in terms of pairing matrix fluctuation paves the way for promising new density functional approximations

Newborn screening by matrix-assisted laser desorption/ionization mass spectrometry based on parylene-matrix chip.

Science.gov (United States)

Kim, Jo-Il; Noh, Joo-Yoon; Kim, Mira; Park, Jong-Min; Song, Hyun-Woo; Kang, Min-Jung; Pyun, Jae-Chul

2017-08-01

Newborn screening for diagnosis of phenylketonuria, homocystinuria, and maple syrup urine disease have been conducted by analyzing the concentration of target amino acids using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-ToF MS) based on parylene-matrix chip. Parylene-matrix chip was applied to MALDI-ToF MS analysis reducing the matrix peaks significantly at low mass-to-charge ratio range (m/z  0.98) and the LODs were ranging from 9.0 to 22.9 μg/mL. Effect of proteins in serum was estimated by comparing MALDI-ToF mass spectra of amino acids-spiked serum before and after the methanol extraction. Interference of other amino acids on analysis of target analyte was determined to be insignificant. From these results, MALDI-ToF MS based on parylene-matrix chip could be applicable to medical diagnosis of neonatal metabolic disorders. Copyright © 2017 Elsevier Inc. All rights reserved.

On matrix fractional differential equations

OpenAIRE

Adem Kılıçman; Wasan Ajeel Ahmood

2017-01-01

The aim of this article is to study the matrix fractional differential equations and to find the exact solution for system of matrix fractional differential equations in terms of Riemann–Liouville using Laplace transform method and convolution product to the Riemann–Liouville fractional of matrices. Also, we show the theorem of non-homogeneous matrix fractional partial differential equation with some illustrative examples to demonstrate the effectiveness of the new methodology. The main objec...

Immobilization of cellulase using porous polymer matrix

International Nuclear Information System (INIS)

Kumakura, M.; Kaetsu, I.

1984-01-01

A new method is discussed for the immobilization of cellulase using porous polymer matrices, which were obtained by radiation polymerization of hydrophilic monomers. In this method, the immobilized enzyme matrix was prepared by enzyme absorbtion in the porous polymer matrix and drying treatment. The enzyme activity of the immobilized enzyme matrix varied with monomer concentration, cooling rate of the monomer solution, and hydrophilicity of the polymer matrix, takinn the change of the nature of the porous structure in the polymer matrix. The leakage of the enzymes from the polymer matrix was not observed in the repeated batch enzyme reactions

Biochemical and biomechanical properties of the pacemaking sinoatrial node extracellular matrix are distinct from contractile left ventricular matrix.

Directory of Open Access Journals (Sweden)

Jessica M Gluck

Full Text Available Extracellular matrix plays a role in differentiation and phenotype development of its resident cells. Although cardiac extracellular matrix from the contractile tissues has been studied and utilized in tissue engineering, extracellular matrix properties of the pacemaking sinoatrial node are largely unknown. In this study, the biomechanical properties and biochemical composition and distribution of extracellular matrix in the sinoatrial node were investigated relative to the left ventricle. Extracellular matrix of the sinoatrial node was found to be overall stiffer than that of the left ventricle and highly heterogeneous with interstitial regions composed of predominantly fibrillar collagens and rich in elastin. The extracellular matrix protein distribution suggests that resident pacemaking cardiomyocytes are enclosed in fibrillar collagens that can withstand greater tensile strength while the surrounding elastin-rich regions may undergo deformation to reduce the mechanical strain in these cells. Moreover, basement membrane-associated adhesion proteins that are ligands for integrins were of low abundance in the sinoatrial node, which may decrease force transduction in the pacemaking cardiomyocytes. In contrast to extracellular matrix of the left ventricle, extracellular matrix of the sinoatrial node may reduce mechanical strain and force transduction in pacemaking cardiomyocytes. These findings provide the criteria for a suitable matrix scaffold for engineering biopacemakers.

Matrix theory selected topics and useful results

CERN Document Server

Mehta, Madan Lal

1989-01-01

Matrices and operations on matrices ; determinants ; elementary operations on matrices (continued) ; eigenvalues and eigenvectors, diagonalization of normal matrices ; functions of a matrix ; positive definiteness, various polar forms of a matrix ; special matrices ; matrices with quaternion elements ; inequalities ; generalised inverse of a matrix ; domain of values of a matrix, location and dispersion of eigenvalues ; symmetric functions ; integration over matrix variables ; permanents of doubly stochastic matrices ; infinite matrices ; Alexander matrices, knot polynomials, torsion numbers.

Random Correlation Matrix and De-Noising

OpenAIRE

Ken-ichi Mitsui; Yoshio Tabata

2006-01-01

In Finance, the modeling of a correlation matrix is one of the important problems. In particular, the correlation matrix obtained from market data has the noise. Here we apply the de-noising processing based on the wavelet analysis to the noisy correlation matrix, which is generated by a parametric function with random parameters. First of all, we show that two properties, i.e. symmetry and ones of all diagonal elements, of the correlation matrix preserve via the de-noising processing and the...

Investigation of the existence and uniqueness of extremal and positive definite solutions of nonlinear matrix equations

Directory of Open Access Journals (Sweden)

Abdel-Shakoor M Sarhan

2016-05-01

Full Text Available Abstract We consider two nonlinear matrix equations X r ± ∑ i = 1 m A i ∗ X δ i A i = I $X^{r} \\pm \\sum_{i = 1}^{m} A_{i}^{*}X^{\\delta_{i}}A_{i} = I$ , where − 1 < δ i < 0 $- 1 < \\delta_{i} < 0$ , and r, m are positive integers. For the first equation (plus case, we prove the existence of positive definite solutions and extremal solutions. Two algorithms and proofs of their convergence to the extremal positive definite solutions are constructed. For the second equation (negative case, we prove the existence and the uniqueness of a positive definite solution. Moreover, the algorithm given in (Duan et al. in Linear Algebra Appl. 429:110-121, 2008 (actually, in (Shi et al. in Linear Multilinear Algebra 52:1-15, 2004 for r = 1 $r = 1$ is proved to be valid for any r. Numerical examples are given to illustrate the performance and effectiveness of all the constructed algorithms. In Appendix, we analyze the ordering on the positive cone P ( n ‾ $\\overline{P(n}$ .

Matrix algebra for higher order moments

NARCIS (Netherlands)

Meijer, Erik

2005-01-01

A large part of statistics is devoted to the estimation of models from the sample covariance matrix. The development of the statistical theory and estimators has been greatly facilitated by the introduction of special matrices, such as the commutation matrix and the duplication matrix, and the

Symmetries and Interactions in Matrix String Theory

NARCIS (Netherlands)

Hacquebord, F.H.

1999-01-01

This PhD-thesis reviews matrix string theory and recent developments therein. The emphasis is put on symmetries, interactions and scattering processes in the matrix model. We start with an introduction to matrix string theory and a review of the orbifold model that flows out of matrix string theory

Phenomenology of the CKM matrix

International Nuclear Information System (INIS)

Nir, Y.

1989-01-01

The way in which an exact determination of the CKM matrix elements tests the standard Model is demonstrated by a two-generation example. The determination of matrix elements from meson semileptonic decays is explained, with an emphasis on the respective reliability of quark level and meson level calculations. The assumptions involved in the use of loop processes are described. Finally, the state of the art of the knowledge of the CKM matrix is presented. 19 refs., 2 figs

Extracellular matrix structure.

Science.gov (United States)

Theocharis, Achilleas D; Skandalis, Spyros S; Gialeli, Chrysostomi; Karamanos, Nikos K

2016-02-01

Extracellular matrix (ECM) is a non-cellular three-dimensional macromolecular network composed of collagens, proteoglycans/glycosaminoglycans, elastin, fibronectin, laminins, and several other glycoproteins. Matrix components bind each other as well as cell adhesion receptors forming a complex network into which cells reside in all tissues and organs. Cell surface receptors transduce signals into cells from ECM, which regulate diverse cellular functions, such as survival, growth, migration, and differentiation, and are vital for maintaining normal homeostasis. ECM is a highly dynamic structural network that continuously undergoes remodeling mediated by several matrix-degrading enzymes during normal and pathological conditions. Deregulation of ECM composition and structure is associated with the development and progression of several pathologic conditions. This article emphasizes in the complex ECM structure as to provide a better understanding of its dynamic structural and functional multipotency. Where relevant, the implication of the various families of ECM macromolecules in health and disease is also presented. Copyright © 2015 Elsevier B.V. All rights reserved.

gkmSVM: an R package for gapped-kmer SVM.

Science.gov (United States)

Ghandi, Mahmoud; Mohammad-Noori, Morteza; Ghareghani, Narges; Lee, Dongwon; Garraway, Levi; Beer, Michael A

2016-07-15

We present a new R package for training gapped-kmer SVM classifiers for DNA and protein sequences. We describe an improved algorithm for kernel matrix calculation that speeds run time by about 2 to 5-fold over our original gkmSVM algorithm. This package supports several sequence kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel. gkmSVM package is freely available through the Comprehensive R Archive Network (CRAN), for Linux, Mac OS and Windows platforms. The C ++ implementation is available at www.beerlab.org/gkmsvm mghandi@gmail.com or mbeer@jhu.edu Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

The Cellular DNA Helicase ChlR1 Regulates Chromatin and Nuclear Matrix Attachment of the Human Papillomavirus 16 E2 Protein and High-Copy-Number Viral Genome Establishment.

Science.gov (United States)

Harris, Leanne; McFarlane-Majeed, Laura; Campos-León, Karen; Roberts, Sally; Parish, Joanna L

2017-01-01

In papillomavirus infections, the viral genome is established as a double-stranded DNA episome. To segregate the episomes into daughter cells during mitosis, they are tethered to cellular chromatin by the viral E2 protein. We previously demonstrated that the E2 proteins of diverse papillomavirus types, including bovine papillomavirus (BPV) and human papillomavirus 16 (HPV16), associate with the cellular DNA helicase ChlR1. This virus-host interaction is important for the tethering of BPV E2 to mitotic chromatin and the stable maintenance of BPV episomes. The role of the association between E2 and ChlR1 in the HPV16 life cycle is unresolved. Here we show that an HPV16 E2 Y131A mutant (E2 Y131A ) had significantly reduced binding to ChlR1 but retained transcriptional activation and viral origin-dependent replication functions. Subcellular fractionation of keratinocytes expressing E2 Y131A showed a marked change in the localization of the protein. Compared to that of wild-type E2 (E2 WT ), the chromatin-bound pool of E2 Y131A was decreased, concomitant with an increase in nuclear matrix-associated protein. Cell cycle synchronization indicated that the shift in subcellular localization of E2 Y131A occurred in mid-S phase. A similar alteration between the subcellular pools of the E2 WT protein occurred upon ChlR1 silencing. Notably, in an HPV16 life cycle model in primary human keratinocytes, mutant E2 Y131A genomes were established as episomes, but at a markedly lower copy number than that of wild-type HPV16 genomes, and they were not maintained upon cell passage. Our studies indicate that ChlR1 is an important regulator of the chromatin association of E2 and of the establishment and maintenance of HPV16 episomes. Infections with high-risk human papillomaviruses (HPVs) are a major cause of anogenital and oropharyngeal cancers. During infection, the circular DNA genome of HPV persists within the nucleus, independently of the host cell chromatin. Persistence of infection

Ultra-high Rates and Reversible Capacity of Li-S Battery with a Nitrogen-doping Conductive Lewis Base Matrix

International Nuclear Information System (INIS)

Cao, Yong; Li, Xi-long; Zheng, Ming-sen; Yang, Mao-ping; Yang, Xu-lai; Dong, Quan-feng

2016-01-01

Highlights: • A polypyrrole/reduced graphene oxide (PPy/rGO) composite was prepared from in-situ hybridization of graphene oxide and pyrrole without additional oxidant. • Nitrogen doped graphene (NG) was obtained from the calcination of the PPy/rGO composite under 1500 °C and was confirmed with abundant pyridinic type nitrogen doping. • NG was employed as a conductive Lewis base matrix of sulfur cathode and the obtained composite cathode exhibited ultra-high rates and reversible capacity. • The excellent electrochemical performance can be attributed to the efficient adsorption of Li 2 S n (n=4-8) on the pyridinic-N enriched NG surface. - Abstract: To improve the electrochemical performance of lithium sulfur batteries, a conductive Lewis base matrix, nitrogen doped graphene (NG), was prepared here through a facile strategy of annealing a polypyrrole/reduced graphene oxide composite. The obtained NG was demonstrated with enriched pyridinic-N doping and was employed as the matrix of sulfur cathode with ultra-high rates, reversible capacity and high coulombic efficiency. The improved performance can be attributed to the high conductivity of the NG and the enhanced adsorption energy of Li 2 S n (n=4-8) on the NG surface. The NG can act not only as an electronic conductive network but also as a Lewis base “catalyst” matrix that promotes the higher Li 2 S n to be further oxidized completely to S 8 as demonstrated in the cyclic voltammetry curve, which can thus significantly improve the sulfur utilization and cyclic stability even at a high sulfur loading of 75% (w/w) in the S@NG composite.

Basic matrix algebra and transistor circuits

CERN Document Server

Zelinger, G

1963-01-01

Basic Matrix Algebra and Transistor Circuits deals with mastering the techniques of matrix algebra for application in transistors. This book attempts to unify fundamental subjects, such as matrix algebra, four-terminal network theory, transistor equivalent circuits, and pertinent design matters. Part I of this book focuses on basic matrix algebra of four-terminal networks, with descriptions of the different systems of matrices. This part also discusses both simple and complex network configurations and their associated transmission. This discussion is followed by the alternative methods of de

Numerical study on optimal Stirling engine regenerator matrix designs taking into account the effects of matrix temperature oscillations

International Nuclear Information System (INIS)

Andersen, Stig Kildegard; Carlsen, Henrik; Thomsen, Per Grove

2006-01-01

A new regenerator matrix design that improves the efficiency of a Stirling engine has been developed in a numerical study of the existing SM5 Stirling engine. A new, detailed, one-dimensional Stirling engine model that delivers results in good agreement with experimental data was used for mapping the performance of the engine, for mapping the effects of regenerator matrix temperature oscillations, and for optimising the regenerator design. The regenerator matrix temperatures were found to oscillate in two modes. The first mode was oscillation of a nearly linear axial matrix temperature profile while the second mode bended the ends of the axial matrix temperature profile when gas flowed into the regenerator with a temperature significantly different from the matrix temperature. The first mode of oscillation improved the efficiency of the engine but the second mode reduced both the work output and efficiency of the engine. A new regenerator with three differently designed matrix sections that amplified the first mode of oscillation and reduced the second improved the efficiency of the engine from the current 32.9 to 33.2% with a 3% decrease in power output. An efficiency of 33.0% was achievable with uniform regenerator matrix properties

Information matrix estimation procedures for cognitive diagnostic models.

Science.gov (United States)

Liu, Yanlou; Xin, Tao; Andersson, Björn; Tian, Wei

2018-03-06

Two new methods to estimate the asymptotic covariance matrix for marginal maximum likelihood estimation of cognitive diagnosis models (CDMs), the inverse of the observed information matrix and the sandwich-type estimator, are introduced. Unlike several previous covariance matrix estimators, the new methods take into account both the item and structural parameters. The relationships between the observed information matrix, the empirical cross-product information matrix, the sandwich-type covariance matrix and the two approaches proposed by de la Torre (2009, J. Educ. Behav. Stat., 34, 115) are discussed. Simulation results show that, for a correctly specified CDM and Q-matrix or with a slightly misspecified probability model, the observed information matrix and the sandwich-type covariance matrix exhibit good performance with respect to providing consistent standard errors of item parameter estimates. However, with substantial model misspecification only the sandwich-type covariance matrix exhibits robust performance. © 2018 The British Psychological Society.

Modeling of Mean-VaR portfolio optimization by risk tolerance when the utility function is quadratic

Science.gov (United States)

Sukono, Sidi, Pramono; Bon, Abdul Talib bin; Supian, Sudradjat

2017-03-01

The problems of investing in financial assets are to choose a combination of weighting a portfolio can be maximized return expectations and minimizing the risk. This paper discusses the modeling of Mean-VaR portfolio optimization by risk tolerance, when square-shaped utility functions. It is assumed that the asset return has a certain distribution, and the risk of the portfolio is measured using the Value-at-Risk (VaR). So, the process of optimization of the portfolio is done based on the model of Mean-VaR portfolio optimization model for the Mean-VaR done using matrix algebra approach, and the Lagrange multiplier method, as well as Khun-Tucker. The results of the modeling portfolio optimization is in the form of a weighting vector equations depends on the vector mean return vector assets, identities, and matrix covariance between return of assets, as well as a factor in risk tolerance. As an illustration of numeric, analyzed five shares traded on the stock market in Indonesia. Based on analysis of five stocks return data gained the vector of weight composition and graphics of efficient surface of portfolio. Vector composition weighting weights and efficient surface charts can be used as a guide for investors in decisions to invest.

Standard Errors for Matrix Correlations.

Science.gov (United States)

Ogasawara, Haruhiko

1999-01-01

Derives the asymptotic standard errors and intercorrelations for several matrix correlations assuming multivariate normality for manifest variables and derives the asymptotic standard errors of the matrix correlations for two factor-loading matrices. (SLD)

Non-negative Matrix Factorization for Binary Data

DEFF Research Database (Denmark)

Larsen, Jacob Søgaard; Clemmensen, Line Katrine Harder

We propose the Logistic Non-negative Matrix Factorization for decomposition of binary data. Binary data are frequently generated in e.g. text analysis, sensory data, market basket data etc. A common method for analysing non-negative data is the Non-negative Matrix Factorization, though...... this is in theory not appropriate for binary data, and thus we propose a novel Non-negative Matrix Factorization based on the logistic link function. Furthermore we generalize the method to handle missing data. The formulation of the method is compared to a previously proposed method (Tome et al., 2015). We compare...... the performance of the Logistic Non-negative Matrix Factorization to Least Squares Non-negative Matrix Factorization and Kullback-Leibler (KL) Non-negative Matrix Factorization on sets of binary data: a synthetic dataset, a set of student comments on their professors collected in a binary term-document matrix...

Form of multicomponent Fickian diffusion coefficients matrix

International Nuclear Information System (INIS)

Wambui Mutoru, J.; Firoozabadi, Abbas

2011-01-01

Highlights: → Irreversible thermodynamics establishes form of multicomponent diffusion coefficients. → Phenomenological coefficients and thermodynamic factors affect sign of diffusion coefficients. → Negative diagonal elements of diffusion coefficients matrix can occur in non-ideal mixtures. → Eigenvalues of the matrix of Fickian diffusion coefficients may not be all real. - Abstract: The form of multicomponent Fickian diffusion coefficients matrix in thermodynamically stable mixtures is established based on the form of phenomenological coefficients and thermodynamic factors. While phenomenological coefficients form a symmetric positive definite matrix, the determinant of thermodynamic factors matrix is positive. As a result, the Fickian diffusion coefficients matrix has a positive determinant, but its elements - including diagonal elements - can be negative. Comprehensive survey of reported diffusion coefficients data for ternary and quaternary mixtures, confirms that invariably the determinant of the Fickian diffusion coefficients matrix is positive.

Symmetry breaking in the double-well hermitian matrix models

International Nuclear Information System (INIS)

Brower, R.C.; Deo, N.; Jain, S.; Tan, C.I.

1993-01-01

We study symmetry breaking in Z 2 symmetric large N matrix models. In the planar approximation for both the symmetric double-well φ 4 model and the symmetric Penner model, we find there is an infinite family of broken symmetry solutions characterized by different sets of recursion coefficients R n and S n that all lead to identical free energies and eigenvalue densities. These solutions can be parameterized by an arbitrary angle θ(x), for each value of x=n/N 4 theory the double scaling string equations are parameterized by a conserved angular momentum parameter in the range 0≤l<∞ and a single arbitrary U(1) phase angle. (orig.)

High-frequency matrix converter with square wave input

Science.gov (United States)

Carr, Joseph Alexander; Balda, Juan Carlos

2015-03-31

A device for producing an alternating current output voltage from a high-frequency, square-wave input voltage comprising, high-frequency, square-wave input a matrix converter and a control system. The matrix converter comprises a plurality of electrical switches. The high-frequency input and the matrix converter are electrically connected to each other. The control system is connected to each switch of the matrix converter. The control system is electrically connected to the input of the matrix converter. The control system is configured to operate each electrical switch of the matrix converter converting a high-frequency, square-wave input voltage across the first input port of the matrix converter and the second input port of the matrix converter to an alternating current output voltage at the output of the matrix converter.

Maximal quantum Fisher information matrix

International Nuclear Information System (INIS)

Chen, Yu; Yuan, Haidong

2017-01-01

We study the existence of the maximal quantum Fisher information matrix in the multi-parameter quantum estimation, which bounds the ultimate precision limit. We show that when the maximal quantum Fisher information matrix exists, it can be directly obtained from the underlying dynamics. Examples are then provided to demonstrate the usefulness of the maximal quantum Fisher information matrix by deriving various trade-off relations in multi-parameter quantum estimation and obtaining the bounds for the scalings of the precision limit. (paper)

How to get the Matrix Organization to Work

DEFF Research Database (Denmark)

Burton, Richard M.; Obel, Børge; Håkonsson, Dorthe Døjbak

2015-01-01

a matrix to work, taking a multi-contingency perspective. We translate the matrix concept for designers and managers who are considering a matrix organization and argue that three factors are critical for its success: (1) Strong purpose: Only choose the matrix structure if there are strong reasons...... for doing so, (2) Alignment among contingencies: A matrix can only be successful if key contingencies are aligned with the matrix’s purpose, and (3) Management of junctions: The success of a matrix depends on how well activities at the junctions of the matrix are managed....

Integrated optic vector-matrix multiplier

Science.gov (United States)

Watts, Michael R [Albuquerque, NM

2011-09-27

A vector-matrix multiplier is disclosed which uses N different wavelengths of light that are modulated with amplitudes representing elements of an N.times.1 vector and combined to form an input wavelength-division multiplexed (WDM) light stream. The input WDM light stream is split into N streamlets from which each wavelength of the light is individually coupled out and modulated for a second time using an input signal representing elements of an M.times.N matrix, and is then coupled into an output waveguide for each streamlet to form an output WDM light stream which is detected to generate a product of the vector and matrix. The vector-matrix multiplier can be formed as an integrated optical circuit using either waveguide amplitude modulators or ring resonator amplitude modulators.

DFT-Based Closed-form Covariance Matrix and Direct Waveforms Design for MIMO Radar to Achieve Desired Beampatterns

KAUST Repository

Bouchoucha, Taha

2017-01-23

In multiple-input multiple-out (MIMO) radar, for desired transmit beampatterns, appropriate correlated waveforms are designed. To design such waveforms, conventional MIMO radar methods use two steps. In the first step, the waveforms covariance matrix, R, is synthesized to achieve the desired beampattern. While in the second step, to realize the synthesized covariance matrix, actual waveforms are designed. Most of the existing methods use iterative algorithms to solve these constrained optimization problems. The computational complexity of these algorithms is very high, which makes them difficult to use in practice. In this paper, to achieve the desired beampattern, a low complexity discrete-Fourier-transform based closed-form covariance matrix design technique is introduced for a MIMO radar. The designed covariance matrix is then exploited to derive a novel closed-form algorithm to directly design the finite-alphabet constant-envelope waveforms for the desired beampattern. The proposed technique can be used to design waveforms for large antenna array to change the beampattern in real time. It is also shown that the number of transmitted symbols from each antenna depends on the beampattern and is less than the total number of transmit antenna elements.

P-matrix description of charged particles interaction

International Nuclear Information System (INIS)

Babenko, V.A.; Petrov, N.M.

1992-01-01

The paper deals with formalism of the P-matrix description of two charged particles interaction. Separation in the explicit form of the background part corresponding to the purely Coulomb interaction in the P-matrix is proposed. Expressions for the purely Coulomb P-matrix, its poles, residues and purely Coulomb P-matrix approach eigenfunctions are obtained. (author). 12 refs

Inverse Operation of Four-dimensional Vector Matrix

OpenAIRE

H J Bao; A J Sang; H X Chen

2011-01-01

This is a new series of study to define and prove multidimensional vector matrix mathematics, which includes four-dimensional vector matrix determinant, four-dimensional vector matrix inverse and related properties. There are innovative concepts of multi-dimensional vector matrix mathematics created by authors with numerous applications in engineering, math, video conferencing, 3D TV, and other fields.

Deposition of matrix-free fullerene films with improved morphology by matrix-assisted pulsed laser evaporation (MAPLE)

DEFF Research Database (Denmark)

Canulescu, Stela; Schou, Jørgen; Fæster, Søren

2013-01-01

Thin films of C60 were deposited by matrix-assisted pulsed laser evaporation (MAPLE) from a frozen target of anisole with 0.67 wt% C60. Above a fluence of 1.5 J/cm2 the C60 films are strongly non-uniform and are resulting from transfer of matrix-droplets containing fullerenes. At low fluence...... the fullerene molecules in the films are intact, the surface morphology is substantially improved and there are no measurable traces of the matrix molecules in the film. This may indicate a regime of dominant evaporation at low fluence which merges into the MAPLE regime of liquid ejection of the host matrix...

Knot invariants and universal R-matrices from perturbative Chern-Simon theory in the almost axial gauge

International Nuclear Information System (INIS)

Van de Wetering, J.F.W.H.

1992-01-01

Using perturbative Chern-Simons theory in the almost axial gauge on the euclidean manifold S 1 xR 2 , we give a prescription for the computation of knot invariants. The method gives the correct expectation value of the unknot to all orders in perturbation theory and gives the correct answer for the spectral-parameter-dependent universal R-matrix to second order. All results are derived for a general semi-simple Lie algebra. (orig.)

Plasma concentrations of extracellular matrix protein fibulin-1 are related to cardiovascular risk markers in chronic kidney disease and diabetes

DEFF Research Database (Denmark)

Scholze, Alexandra; Bladbjerg, Else-Marie; Sidelmann, Johannes J

2013-01-01

ABSTRACT: BACKGROUND: Fibulin-1 is one of a few extracellular matrix proteins present in blood in high concentrations. We aimed to define the relationship between plasma fibulin-1 levels and risk markers of cardiovascular disease. METHODS: Plasma fibulin-1 was determined in subjects with chronic...... to determine central hemodynamic and arterial stiffness indices. RESULTS: We observed a positive correlation of fibulin-1 levels with age (r = 0.38; p = 0.033), glycated hemoglobin (r = 0.80; p = 0.003), creatinine (r = 0.35; p = 0.045), and fibrinogen (r = 0.39; p = 0.027). Glomerular filtration rate...... and fibulin-1 were inversely correlated (r = -0.57; p = 0.022). There was a positive correlation between fibulin-1 and central pulse pressure (r = 0.44; p = 0.011) and central augmentation pressure (r = 0.55; p = 0.001). In a multivariable regression model, diabetes, creatinine, fibrinogen and central...

Elementary matrix algebra

CERN Document Server

Hohn, Franz E

2012-01-01

This complete and coherent exposition, complemented by numerous illustrative examples, offers readers a text that can teach by itself. Fully rigorous in its treatment, it offers a mathematically sound sequencing of topics. The work starts with the most basic laws of matrix algebra and progresses to the sweep-out process for obtaining the complete solution of any given system of linear equations - homogeneous or nonhomogeneous - and the role of matrix algebra in the presentation of useful geometric ideas, techniques, and terminology.Other subjects include the complete treatment of the structur

77 FR 1656 - Proposed Establishment of Restricted Areas R-5402, R-5403A, R-5403B, R-5403C, R-5403D, R-5403E, R...

Science.gov (United States)

2012-01-11

...-0117; Airspace Docket No. 09-AGL-31] RIN 2120-AI92 Proposed Establishment of Restricted Areas R-5402, R-5403A, R- 5403B, R-5403C, R-5403D, R-5403E, R-5403F; Devils Lake, ND AGENCY: Federal Aviation... Restricted Areas R-5402, R-5403A, R-5403B, R- 5403C, R-5403D, R-5403E, R-5403F; Devils Lake, ND (76 FR 72869...

77 FR 36907 - Establishment of Restricted Areas R-5402, R-5403A, R-5403B, R-5403C, R-5403D, R-5403E, and R...

Science.gov (United States)

2012-06-20

...; Airspace Docket No. 09-AGL-31] Establishment of Restricted Areas R-5402, R-5403A, R-5403B, R- 5403C, R-5403D, R-5403E, and R-5403F; Devils Lake, ND AGENCY: Federal Aviation Administration (FAA), DOT. ACTION... establish Restricted Areas R- 5402, R-5403A, R-5403B, R-5403C, R-5403D, R-5403E, and R-5403F in the vicinity...

Numerical study on optimal Stirling engine regenerator matrix designs taking into account the effects of matrix temperature oscillations

DEFF Research Database (Denmark)

Andersen, Stig Kildegård; Carlsen, Henrik; Thomsen, Per Grove

2006-01-01

A new regenerator matrix design that improves the efficiency of a Stirling engine has been developed in a numerical study of the existing SM5 Stirling engine. A new, detailed, one-dimensional Stirling engine model that delivers results in good agreement with experimental data was used for mapping...... the per- formance of the engine, for mapping the effects of regenerator matrix temperature oscillations, and for optimising the regenerator design. The regenerator matrix temperatures were found to oscillate in two modes. The first mode was oscillation of a nearly linear axial matrix temperature profile...... while the second mode bended the ends of the axial matrix temperature profile when gas flowed into the regenerator with a temperature significantly different from the matrix temperature. The first mode of oscillation improved the efficiency of the engine but the second mode reduced both the work output...

Functionality and stability data of detergent purified nAChR from Torpedo using lipidic matrixes and macroscopic electrophysiology

Directory of Open Access Journals (Sweden)

Luis F. Padilla-Morales

2016-03-01

Full Text Available The presented data provides additional information about the assessment of affinity purified nicotinic acetylcholine receptor (nAChR rich membrane solubilized with long chain (16 saturated carbons lysophospholipid with glycerol headgroup (LFG-16. The assessment of stability and functionality of solubilized membrane protein is a critical step prior to further crystallization trails. One of the key factors for this task is the appropriate choice of a detergent that can support nAChR activity and stability comparable to the crude membranes. The stability of the nAChR-LFG-16 complex incorporated into lipid cubic phase (LCP was monitored for a period of 30 days by means of fluorescence recovery after photobleaching (FRAP and the functionality was evaluated after its incorporation into Xenopus oocyte by means of the two electrode voltage clamp technique. Keywords: Detergents, Fluorescence recovery after photobleaching, Lipidic Cubic Phase, nAChR, Planar lipid bilayer, Two-electrode voltage clamp

Ubiquitination of specific mitochondrial matrix proteins

International Nuclear Information System (INIS)

Lehmann, Gilad; Ziv, Tamar; Braten, Ori; Admon, Arie; Udasin, Ronald G.; Ciechanover, Aaron

2016-01-01

Several protein quality control systems in bacteria and/or mitochondrial matrix from lower eukaryotes are absent in higher eukaryotes. These are transfer-messenger RNA (tmRNA), The N-end rule ATP-dependent protease ClpAP, and two more ATP-dependent proteases, HslUV and ClpXP (in yeast). The lost proteases resemble the 26S proteasome and the role of tmRNA and the N-end rule in eukaryotic cytosol is performed by the ubiquitin proteasome system (UPS). Therefore, we hypothesized that the UPS might have substituted these systems – at least partially – in the mitochondrial matrix of higher eukaryotes. Using three independent experimental approaches, we demonstrated the presence of ubiquitinated proteins in the matrix of isolated yeast mitochondria. First, we show that isolated mitochondria contain ubiquitin (Ub) conjugates, which remained intact after trypsin digestion. Second, we demonstrate that the mitochondrial soluble fraction contains Ub-conjugates, several of which were identified by mass spectrometry and are localized to the matrix. Third, using immunoaffinity enrichment by specific antibodies recognizing digested ubiquitinated peptides, we identified a group of Ub-modified matrix proteins. The modification was further substantiated by separation on SDS-PAGE and immunoblots. Last, we attempted to identify the ubiquitin ligase(s) involved, and identified Dma1p as a trypsin-resistant protein in our mitochondrial preparations. Taken together, these data suggest a yet undefined role for the UPS in regulation of the mitochondrial matrix proteins. -- Highlights: •Mitochondrial matrix contains ubiquitinated proteins. •Ubiquitination occurs most probably in the matrix. •Dma1p is a ubiquitin ligase present in mitochondrial preparations.

Fibre-Matrix Interaction in Soft Tissue

International Nuclear Information System (INIS)

Guo, Zaoyang

2010-01-01

Although the mechanical behaviour of soft tissue has been extensively studied, the interaction between the collagen fibres and the ground matrix has not been well understood and is therefore ignored by most constitutive models of soft tissue. In this paper, the human annulus fibrosus is used as an example and the potential fibre-matrix interaction is identified by careful investigation of the experimental results of biaxial and uniaxial testing of the human annulus fibrosus. First, the uniaxial testing result of the HAF along the axial direction is analysed and it is shown that the mechanical behaviour of the ground matrix can be well simulated by the incompressible neo-Hookean model when the collagen fibres are all under contraction. If the collagen fibres are stretched, the response of the ground matrix can still be described by the incompressible neo-Hookean model, but the effective stiffness of the matrix depends on the fibre stretch ratio. This stiffness can be more than 10 times larger than the one obtained with collagen fibres under contraction. This phenomenon can only be explained by the fibre-matrix interaction. Furthermore, we find that the physical interpretation of this interaction includes the inhomogeneity of the soft tissue and the fibre orientation dispersion. The dependence of the tangent stiffness of the matrix on the first invariant of the deformation tensor can also be explained by the fibre orientation dispersion. The significant effect of the fibre-matrix interaction strain energy on mechanical behaviour of the soft tissue is also illustrated by comparing some simulation results.

Ubiquitination of specific mitochondrial matrix proteins

Energy Technology Data Exchange (ETDEWEB)

Lehmann, Gilad [The Janet and David Polak Tumor and Vascular Biology Research Center and the Technion Integrated Cancer Center (TICC), The Rappaport Faculty of Medicine and Research Institute, Haifa, 31096 (Israel); Ziv, Tamar [The Smoler Proteomics Center, Faculty of Biology – Technion-Israel Institute of Technology, Haifa, 32000 (Israel); Braten, Ori [The Janet and David Polak Tumor and Vascular Biology Research Center and the Technion Integrated Cancer Center (TICC), The Rappaport Faculty of Medicine and Research Institute, Haifa, 31096 (Israel); Admon, Arie [The Smoler Proteomics Center, Faculty of Biology – Technion-Israel Institute of Technology, Haifa, 32000 (Israel); Udasin, Ronald G. [The Janet and David Polak Tumor and Vascular Biology Research Center and the Technion Integrated Cancer Center (TICC), The Rappaport Faculty of Medicine and Research Institute, Haifa, 31096 (Israel); Ciechanover, Aaron, E-mail: aaroncie@tx.technion.ac.il [The Janet and David Polak Tumor and Vascular Biology Research Center and the Technion Integrated Cancer Center (TICC), The Rappaport Faculty of Medicine and Research Institute, Haifa, 31096 (Israel)

2016-06-17

Several protein quality control systems in bacteria and/or mitochondrial matrix from lower eukaryotes are absent in higher eukaryotes. These are transfer-messenger RNA (tmRNA), The N-end rule ATP-dependent protease ClpAP, and two more ATP-dependent proteases, HslUV and ClpXP (in yeast). The lost proteases resemble the 26S proteasome and the role of tmRNA and the N-end rule in eukaryotic cytosol is performed by the ubiquitin proteasome system (UPS). Therefore, we hypothesized that the UPS might have substituted these systems – at least partially – in the mitochondrial matrix of higher eukaryotes. Using three independent experimental approaches, we demonstrated the presence of ubiquitinated proteins in the matrix of isolated yeast mitochondria. First, we show that isolated mitochondria contain ubiquitin (Ub) conjugates, which remained intact after trypsin digestion. Second, we demonstrate that the mitochondrial soluble fraction contains Ub-conjugates, several of which were identified by mass spectrometry and are localized to the matrix. Third, using immunoaffinity enrichment by specific antibodies recognizing digested ubiquitinated peptides, we identified a group of Ub-modified matrix proteins. The modification was further substantiated by separation on SDS-PAGE and immunoblots. Last, we attempted to identify the ubiquitin ligase(s) involved, and identified Dma1p as a trypsin-resistant protein in our mitochondrial preparations. Taken together, these data suggest a yet undefined role for the UPS in regulation of the mitochondrial matrix proteins. -- Highlights: •Mitochondrial matrix contains ubiquitinated proteins. •Ubiquitination occurs most probably in the matrix. •Dma1p is a ubiquitin ligase present in mitochondrial preparations.

Návrh strategií pro zemědělskou společnost AGROSEV spol. s r.o.

OpenAIRE

Anděl, Karel

2015-01-01

Bachelor thesis is focused on proposing strategies for the agricultural society AG-ROSEV spol. s r.o. The strategies are formulated based on Ansoff matrix product - market. Proposals for strategies are based on environment analysis, which are made by using PESTEL method, Porter's model of five drivers, McKinsey 7S model and BCG matrix. At the conclusion of this thesis is the most convenient strategy economically evaluated and given recommendations for its implementation.

Convergence of Transition Probability Matrix in CLVMarkov Models

Science.gov (United States)

Permana, D.; Pasaribu, U. S.; Indratno, S. W.; Suprayogi, S.

2018-04-01

A transition probability matrix is an arrangement of transition probability from one states to another in a Markov chain model (MCM). One of interesting study on the MCM is its behavior for a long time in the future. The behavior is derived from one property of transition probabilty matrix for n steps. This term is called the convergence of the n-step transition matrix for n move to infinity. Mathematically, the convergence of the transition probability matrix is finding the limit of the transition matrix which is powered by n where n moves to infinity. The convergence form of the transition probability matrix is very interesting as it will bring the matrix to its stationary form. This form is useful for predicting the probability of transitions between states in the future. The method usually used to find the convergence of transition probability matrix is through the process of limiting the distribution. In this paper, the convergence of the transition probability matrix is searched using a simple concept of linear algebra that is by diagonalizing the matrix.This method has a higher level of complexity because it has to perform the process of diagonalization in its matrix. But this way has the advantage of obtaining a common form of power n of the transition probability matrix. This form is useful to see transition matrix before stationary. For example cases are taken from CLV model using MCM called Model of CLV-Markov. There are several models taken by its transition probability matrix to find its convergence form. The result is that the convergence of the matrix of transition probability through diagonalization has similarity with convergence with commonly used distribution of probability limiting method.

Octonionic matrix representation and electromagnetism

Energy Technology Data Exchange (ETDEWEB)

Chanyal, B. C. [Kumaun University, S. S. J. Campus, Almora (India)

2014-12-15

Keeping in mind the important role of octonion algebra, we have obtained the electromagnetic field equations of dyons with an octonionic 8 x 8 matrix representation. In this paper, we consider the eight - dimensional octonionic space as a combination of two (external and internal) four-dimensional spaces for the existence of magnetic monopoles (dyons) in a higher-dimensional formalism. As such, we describe the octonion wave equations in terms of eight components from the 8 x 8 matrix representation. The octonion forms of the generalized potential, fields and current source of dyons in terms of 8 x 8 matrix are discussed in a consistent manner. Thus, we have obtained the generalized Dirac-Maxwell equations of dyons from an 8x8 matrix representation of the octonion wave equations in a compact and consistent manner. The generalized Dirac-Maxwell equations are fully symmetric Maxwell equations and allow for the possibility of magnetic charges and currents, analogous to electric charges and currents. Accordingly, we have obtained the octonionic Dirac wave equations in an external field from the matrix representation of the octonion-valued potentials of dyons.

48 CFR 2152.370 - Use of the matrix.

Science.gov (United States)

2010-10-01

... 48 Federal Acquisition Regulations System 6 2010-10-01 2010-10-01 true Use of the matrix. 2152.370... CONTRACT CLAUSES Provision and Clause Matrix 2152.370 Use of the matrix. (a) The matrix in this section... clause is to be used only when the applicable conditions are met. FEGLI Program Clause Matrix Clause No...

Determination of saccharides in fruit juices by capillary electrophoresis and matrix-assisted laser desorption ionization time-of-flight mass spectrometry

Czech Academy of Sciences Publication Activity Database

Žídková, Jitka; Chmelík, Josef

2001-01-01

Roč. 36, č. 4 (2001), s. 417-421 ISSN 1076-5174 R&D Projects: GA MZe EP9410 Institutional research plan: CEZ:AV0Z4031919 Keywords : fruit juices * adulteration * matrix-assisted laser deasorption Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 2.685, year: 2001

Multiscale Modeling of Ceramic Matrix Composites

Science.gov (United States)

Bednarcyk, Brett A.; Mital, Subodh K.; Pineda, Evan J.; Arnold, Steven M.

2015-01-01

Results of multiscale modeling simulations of the nonlinear response of SiC/SiC ceramic matrix composites are reported, wherein the microstructure of the ceramic matrix is captured. This micro scale architecture, which contains free Si material as well as the SiC ceramic, is responsible for residual stresses that play an important role in the subsequent thermo-mechanical behavior of the SiC/SiC composite. Using the novel Multiscale Generalized Method of Cells recursive micromechanics theory, the microstructure of the matrix, as well as the microstructure of the composite (fiber and matrix) can be captured.

Measuring methods of matrix diffusion

International Nuclear Information System (INIS)

Muurinen, A.; Valkiainen, M.

1988-03-01

In Finland the spent nuclear fuel is planned to be disposed of at large depths in crystalline bedrock. The radionuclides which are dissolved in the groundwater may be able to diffuse into the micropores of the porous rock matrix and thus be withdrawn from the flowing water in the fractures. This phenomenon is called matrix diffusion. A review over matrix diffusion is presented in the study. The main interest is directed to the diffusion of non-sorbing species. The review covers diffusion experiments and measurements of porosity, pore size, specific surface area and water permeability

Unraveling multi-spin effects in rotational resonance nuclear magnetic resonance using effective reduced density matrix theory

International Nuclear Information System (INIS)

SivaRanjan, Uppala; Ramachandran, Ramesh

2014-01-01

A quantum-mechanical model integrating the concepts of reduced density matrix and effective Hamiltonians is proposed to explain the multi-spin effects observed in rotational resonance (R 2 ) nuclear magnetic resonance (NMR) experiments. Employing this approach, the spin system of interest is described in a reduced subspace inclusive of its coupling to the surroundings. Through suitable model systems, the utility of our theory is demonstrated and verified with simulations emerging from both analytic and numerical methods. The analytic results presented in this article provide an accurate description/interpretation of R 2 experimental results and could serve as a test-bed for distinguishing coherent/incoherent effects in solid-state NMR

Unraveling multi-spin effects in rotational resonance nuclear magnetic resonance using effective reduced density matrix theory

Energy Technology Data Exchange (ETDEWEB)

SivaRanjan, Uppala; Ramachandran, Ramesh, E-mail: rramesh@iisermohali.ac.in [Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Mohali, Sector 81, Manauli, P.O. Box-140306, Mohali, Punjab (India)

2014-02-07

A quantum-mechanical model integrating the concepts of reduced density matrix and effective Hamiltonians is proposed to explain the multi-spin effects observed in rotational resonance (R{sup 2}) nuclear magnetic resonance (NMR) experiments. Employing this approach, the spin system of interest is described in a reduced subspace inclusive of its coupling to the surroundings. Through suitable model systems, the utility of our theory is demonstrated and verified with simulations emerging from both analytic and numerical methods. The analytic results presented in this article provide an accurate description/interpretation of R{sup 2} experimental results and could serve as a test-bed for distinguishing coherent/incoherent effects in solid-state NMR.

Enamel matrix derivative (Emdogain(R)) for periodontal tissue regeneration in intrabony defects.

Science.gov (United States)

Esposito, Marco; Grusovin, Maria Gabriella; Papanikolaou, Nikolaos; Coulthard, Paul; Worthington, Helen V

2009-10-07

Periodontitis is a chronic infective disease of the gums caused by bacteria present in dental plaque. This condition induces the breakdown of the tooth supporting apparatus until teeth are lost. Surgery may be indicated to arrest disease progression and regenerate lost tissues. Several surgical techniques have been developed to regenerate periodontal tissues including guided tissue regeneration (GTR), bone grafting (BG) and the use of enamel matrix derivative (EMD). EMD is an extract of enamel matrix and contains amelogenins of various molecular weights. Amelogenins are involved in the formation of enamel and periodontal attachment formation during tooth development. To test whether EMD is effective, and to compare EMD versus GTR, and various BG procedures for the treatment of intrabony defects. We searched the Cochrane Oral Health Group Trials Register, CENTRAL, MEDLINE and EMBASE. Several journals were handsearched. No language restrictions were applied. Authors of randomised controlled trials (RCTs) identified, personal contacts and the manufacturer were contacted to identify unpublished trials. Most recent search: February 2009. RCTs on patients affected by periodontitis having intrabony defects of at least 3 mm treated with EMD compared with open flap debridement, GTR and various BG procedures with at least 1 year follow up. The outcome measures considered were: tooth loss, changes in probing attachment levels (PAL), pocket depths (PPD), gingival recessions (REC), bone levels from the bottom of the defects on intraoral radiographs, aesthetics and adverse events. The following time-points were to be evaluated: 1, 5 and 10 years. Screening of eligible studies, assessment of the methodological quality of the trials and data extraction were conducted in duplicate and independently by two authors. Results were expressed as random-effects models using mean differences for continuous outcomes and risk ratios (RR) for dichotomous outcomes with 95% confidence intervals

Analytic matrix elements with shifted correlated Gaussians

DEFF Research Database (Denmark)

Fedorov, D. V.

2017-01-01

Matrix elements between shifted correlated Gaussians of various potentials with several form-factors are calculated analytically. Analytic matrix elements are of importance for the correlated Gaussian method in quantum few-body physics.......Matrix elements between shifted correlated Gaussians of various potentials with several form-factors are calculated analytically. Analytic matrix elements are of importance for the correlated Gaussian method in quantum few-body physics....

Effect of the Heat Treatment on the Graphite Matrix of Fuel Element for HTGR

International Nuclear Information System (INIS)

Lee, Chungyong; Lee, Seungjae; Suh, Jungmin; Jo, Youngho; Lee, Youngwoo; Cho, Moonsung

2013-01-01

In this paper, the cylinder-formed fuel element for the block type reactor is focused on, which consists of the large part of graphite matrix. One of the most important properties of the graphite matrix is the mechanical strength for the high reliability because the graphite matrix should be enabled to protect the TRISO particles from the irradiation environment and the impact from the outside. In this study, the three kinds of candidate graphites and Phenol as a binder were chosen and mixed with each other, formed and heated for the compressive strength test. The objective of this research is to optimize the kinds and composition of the mixed graphite and the forming process by evaluating the compressive strength before/after heat treatment (carbonization of binder). In this study, the effect of heat treatment on graphite matrix was studied in terms of the density and the compressive strength. The size (diameter and length) of pellet is increased by heat treatment. Due to additional weight reduction and swelling (length and diameter) of samples the density of graphite pellet is decreased from about 2.0 to about 1.7g/cm 3 . From the mechanical test results, the compressive strength of graphite pellets was related to the various conditions such as the contents of binder, the kinds of graphite and the heat treatment. Both the green pellet and the heat treated pellet, the compressive strength of G+S+P pellets is relatively higher than that of R+S+P pellets. To optimize fuel element matrix, the effect of Phenol and other binders, graphite composition and the heat treatment on the mechanical properties will be deeply investigated for further study

Response matrix method for large LMFBR analysis

International Nuclear Information System (INIS)

King, M.J.

1977-06-01

The feasibility of using response matrix techniques for computational models of large LMFBRs is examined. Since finite-difference methods based on diffusion theory have generally found a place in fast-reactor codes, a brief review of their general matrix foundation is given first in order to contrast it to the general strategy of response matrix methods. Then, in order to present the general method of response matrix technique, two illustrative examples are given. Matrix algorithms arising in the application to large LMFBRs are discussed, and the potential of the response matrix method is explored for a variety of computational problems. Principal properties of the matrices involved are derived with a view to application of numerical methods of solution. The Jacobi iterative method as applied to the current-balance eigenvalue problem is discussed

The extracellular matrix of the lung and its role in edema formation

Directory of Open Access Journals (Sweden)

Paolo Pelosi

2007-06-01

Full Text Available The extracellular matrix is composed of a three-dimensional fiber mesh filled with different macromolecules such as: collagen (mainly type I and III, elastin, glycosaminoglycans, and proteoglycans. In the lung, the extracellular matrix has several functions which provide: 1 mechanical tensile and compressive strength and elasticity, 2 low mechanical tissue compliance contributing to the maintenance of normal interstitial fluid dynamics, 3 low resistive pathway for an effective gas exchange, d control of cell behavior by the binding of growth factors, chemokines, cytokines and the interaction with cell-surface receptors, and e tissue repair and remodeling. Fragmentation and disorganization of extracellular matrix components comprises the protective role of the extracellular matrix, leading to interstitial and eventually severe lung edema. Thus, once conditions of increased microvascular filtration are established, matrix remodeling proceeds fairly rapidly due to the activation of proteases. Conversely, a massive matrix deposition of collagen fiber decreases interstitial compliance and therefore makes the tissue safety factor stronger. As a result, changes in lung extracellular matrix significantly affect edema formation and distribution in the lung.A matriz extracelular é um aglomerado tridimensional demacromoléculas composta por: fibras colágenas (principalmente, tipos I e III, elastina, glicosaminoglicanos e proteoglicanos. No pulmão, a matriz extracelular tem várias funções, tais como: 1 promover estresse tensil e elasticidade tecidual, 2 contribuir para a manutenção da dinâmica de fluidos no interstício, 3 propiciar efetiva troca gasosa, 4 controlar a função celular através de sua ligação com fatores de crescimento, quimiocinas, citocinas e interação com receptores de superfície, e 5 remodelamento e reparo tecidual. A fragmentação e a desorganização da matriz extracelular pode acarretar edema intersticial e

The requirement of matrix ATP for the import of precursor proteins into the mitochondrial matrix and intermembrane space

NARCIS (Netherlands)

Stuart, Rosemary A.; Gruhler, Albrecht; Klei, Ida van der; Guiard, Bernard; Koll, Hans; Neupert, Walter

1994-01-01

The role of ATP in the matrix for the import of precursor proteins into the various mitochondrial subcompartments was investigated by studying protein translocation at experimentally defined ATP levels. Proteins targeted to the matrix were neither imported or processed when matrix ATP was depleted.

On matrix diffusion: formulations, solution methods and qualitative effects

Science.gov (United States)

Carrera, Jesús; Sánchez-Vila, Xavier; Benet, Inmaculada; Medina, Agustín; Galarza, Germán; Guimerà, Jordi

Matrix diffusion has become widely recognized as an important transport mechanism. Unfortunately, accounting for matrix diffusion complicates solute-transport simulations. This problem has led to simplified formulations, partly motivated by the solution method. As a result, some confusion has been generated about how to properly pose the problem. One of the objectives of this work is to find some unity among existing formulations and solution methods. In doing so, some asymptotic properties of matrix diffusion are derived. Specifically, early-time behavior (short tests) depends only on φm2RmDm / Lm2, whereas late-time behavior (long tracer tests) depends only on φmRm, and not on matrix diffusion coefficient or block size and shape. The latter is always true for mean arrival time. These properties help in: (a) analyzing the qualitative behavior of matrix diffusion; (b) explaining one paradox of solute transport through fractured rocks (the apparent dependence of porosity on travel time); (c) discriminating between matrix diffusion and other problems (such as kinetic sorption or heterogeneity); and (d) describing identifiability problems and ways to overcome them. RésuméLa diffusion matricielle est un phénomène reconnu maintenant comme un mécanisme de transport important. Malheureusement, la prise en compte de la diffusion matricielle complique la simulation du transport de soluté. Ce problème a conduit à des formulations simplifiées, en partie à cause de la méthode de résolution. Il s'en est suivi une certaine confusion sur la façon de poser correctement le problème. L'un des objectifs de ce travail est de trouver une certaine unité parmi les formulations et les méthodes de résolution. C'est ainsi que certaines propriétés asymptotiques de la diffusion matricielle ont été dérivées. En particulier, le comportement à l'origine (expériences de traçage courtes) dépend uniquement du terme φm2RmDm / Lm2, alors que le comportement à long terme

Extracellular matrix metalloproteinase inducer (EMMPRIN) is a potential biomarker of angiogenesis in proliferative diabetic retinopathy.

Science.gov (United States)

Abu El-Asrar, Ahmed M; Ahmad, Ajmal; Alam, Kaiser; Siddiquei, Mohammad Mairaj; Mohammad, Ghulam; Hertogh, Gert De; Mousa, Ahmed; Opdenakker, Ghislain

2017-11-01

Extracellular matrix metalloproteinase inducer (EMMPRIN) promotes angiogenesis through matrix metalloproteinases (MMPs) and vascular endothelial growth factor (VEGF) production. We investigated the expression levels of EMMPRIN and correlated these levels with VEGF, MMP-1 and MMP-9 in proliferative diabetic retinopathy (PDR). In addition, we examined the expression of EMMPRIN in the retinas of diabetic rats and the effect of EMMPRIN on the induction of angiogenesis regulatory factors in human retinal microvascular endothelial cells (HRMECs). Vitreous samples from 40 PDR and 19 non-diabetic patients, epiretinal membranes from 12 patients with PDR, retinas of rats and HRMECs were studied by enzyme-linked immunosorbent assay (ELISA), immunohistochemistry, Western blot analysis, zymography analysis and RT-PCR. We showed a significant increase in the expression of EMMPRIN, VEGF, MMP-1 and MMP-9 in vitreous samples from PDR patients compared with non-diabetic controls (p EMMPRIN and the levels of VEGF (r = 0.38; p = 0.003), MMP-1 (r = 0.36; p = 0.005) and MMP-9 (r = 0.46; p = 0.003). In epiretinal membranes, EMMPRIN was expressed in vascular endothelial cells and stromal cells. Significant increase of EMMPRIN mRNA was detected in rat retinas after induction of diabetes. EMMPRIN induced hypoxia-inducible factor-1α, VEGF and MMP-1 expression in HRMEC. These results suggest that EMMPRIN/MMPs/VEGF pathway is involved in PDR angiogenesis. © 2016 Acta Ophthalmologica Scandinavica Foundation. Published by John Wiley & Sons Ltd.

On matrix fractional differential equations

Directory of Open Access Journals (Sweden)

Adem Kılıçman

2017-01-01

Full Text Available The aim of this article is to study the matrix fractional differential equations and to find the exact solution for system of matrix fractional differential equations in terms of Riemann–Liouville using Laplace transform method and convolution product to the Riemann–Liouville fractional of matrices. Also, we show the theorem of non-homogeneous matrix fractional partial differential equation with some illustrative examples to demonstrate the effectiveness of the new methodology. The main objective of this article is to discuss the Laplace transform method based on operational matrices of fractional derivatives for solving several kinds of linear fractional differential equations. Moreover, we present the operational matrices of fractional derivatives with Laplace transform in many applications of various engineering systems as control system. We present the analytical technique for solving fractional-order, multi-term fractional differential equation. In other words, we propose an efficient algorithm for solving fractional matrix equation.

Recombinant Brugia malayi pepsin inhibitor (rBm33) exploits host signaling events to regulate inflammatory responses associated with lymphatic filarial infections.

Science.gov (United States)

Sreenivas, Kirthika; Kalyanaraman, Haripriya; Babu, Subash; Narayanan, Rangarajan Badri

2017-11-01

Prolonged existence of filarial parasites and their molecules within the host modulate the host immune system to instigate their survival and induce inflammatory responses that contribute to disease progression. Recombinant Brugia malayi pepsin inhibitor (rBm33) modulates the host immune responses by skewing towards Th1 responses characterized by secretion of inflammatory molecules such as TNF-α, IL-6, nitric oxide (NO). Here we also specified the molecular signaling events triggered by rBm33 in peripheral blood mononuclear cells (PBMCs) of filarial endemic normals (EN). rBm33 predominantly enhanced the levels of nitric oxide in cultured PBMCs but did not result in oxidative stress to the host cells. Further, rBm33 treatment of human PBMCs resulted in higher GSH/GSSG levels. MYD88 dependent activation was found to be associated with rBm33 specific inflammatory cytokine production. rBm33 triggered intracellular signaling events also involved JNK activation in host PBMCs. In addition, c-Fos and not NF-κB was identified as the transcription factor regulating the expression of inflammatory cytokines in rBm33 stimulated PBMCs. rBm33 marked its role in filarial pathology by altered levels of growth factors but did not have a significant impact on matrix metalloproteinases (MMPs), tissue inhibitors of matrix metalloproteinases (TIMPs) activity of host PBMCs. Thus, the study outlines the signaling network of rBm33 induced inflammatory responses within the host immune cells. Copyright © 2017 Elsevier Ltd. All rights reserved.

Differentiation of clinically relevant Mucorales Rhizopus microsporus and R. arrhizus by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS).

Science.gov (United States)

Dolatabadi, Somayeh; Kolecka, Anna; Versteeg, Matthijs; de Hoog, Sybren G; Boekhout, Teun

2015-07-01

This study addresses the usefulness of matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) MS for reliable identification of the two most frequently occurring clinical species of Rhizopus, namely Rhizopus arrhizus with its two varieties, arrhizus and delemar, and Rhizopus microsporus. The test-set comprised 38 isolates of clinical and environmental origin previously identified by internal transcribed spacer (ITS) sequencing of rDNA. Multi-locus sequence data targeting three gene markers (ITS, ACT, TEF ) showed two monophylic clades for Rhizopus arrhizus and Rhizopus microsporus (bootstrap values of 99 %). Cluster analysis confirmed the presence of two distinct clades within Rhizopus arrhizus representing its varieties arrhizus and delemar. The MALDI Biotyper 3.0 Microflex LT platform (Bruker Daltonics) was used to confirm the distinction between Rhizopus arrhizus and Rhizopus microsporus and the presence of two varieties within the species Rhizopus arrhizus. An in-house database of 30 reference main spectra (MSPs) was initially tested for correctness using commercially available databases of Bruker Daltonics. By challenging the database with the same strains of which an in-house database was created, automatic identification runs confirmed that MALDI-TOF MS is able to recognize the strains at the variety level. Based on principal component analysis, two MSP dendrograms were created and showed concordance with the multi-locus tree; thus, MALDI-TOF MS is a useful tool for diagnostics of mucoralean species.

Risk matrix model for rotating equipment

Directory of Open Access Journals (Sweden)

Wassan Rano Khan

2014-07-01

Full Text Available Different industries have various residual risk levels for their rotating equipment. Accordingly the occurrence rate of the failures and associated failure consequences categories are different. Thus, a generalized risk matrix model is developed in this study which can fit various available risk matrix standards. This generalized risk matrix will be helpful to develop new risk matrix, to fit the required risk assessment scenario for rotating equipment. Power generation system was taken as case study. It was observed that eight subsystems were under risk. Only vibration monitor system was under high risk category, while remaining seven subsystems were under serious and medium risk categories.

A Generalization of the Alias Matrix

DEFF Research Database (Denmark)

Kulahci, Murat; Bisgaard, S.

2006-01-01

The investigation of aliases or biases is important for the interpretation of the results from factorial experiments. For two-level fractional factorials this can be facilitated through their group structure. For more general arrays the alias matrix can be used. This tool is traditionally based...... on the assumption that the error structure is that associated with ordinary least squares. For situations where that is not the case, we provide in this article a generalization of the alias matrix applicable under the generalized least squares assumptions. We also show that for the special case of split plot error...... structure, the generalized alias matrix simplifies to the ordinary alias matrix....

Multi-cut solutions in Chern-Simons matrix models

Science.gov (United States)

Morita, Takeshi; Sugiyama, Kento

2018-04-01

We elaborate the Chern-Simons (CS) matrix models at large N. The saddle point equations of these matrix models have a curious structure which cannot be seen in the ordinary one matrix models. Thanks to this structure, an infinite number of multi-cut solutions exist in the CS matrix models. Particularly we exactly derive the two-cut solutions at finite 't Hooft coupling in the pure CS matrix model. In the ABJM matrix model, we argue that some of multi-cut solutions might be interpreted as a condensation of the D2-brane instantons.

Survival of Lactobacillus rhamnosus strains inoculated in cheese matrix during simulated human digestion.

Science.gov (United States)

Pitino, Iole; Randazzo, Cinzia L; Cross, Kathryn L; Parker, Mary L; Bisignano, Carlo; Wickham, Martin S J; Mandalari, Giuseppina; Caggia, Cinzia

2012-08-01

Survival of probiotic bacteria during transit through the gastrointestinal (GI) tract is influenced by a number of environmental variables including stomach acidity, bile salts, digestive enzymes and food matrix. This study assessed survival of seven selected Lactobacillus rhamnosus strains delivered within a model cheese system to the human upper GI tract using a dynamic gastric model (DGM). Good survival rates for all tested strains were recorded during both simulated gastric and duodenal digestion. Strains H12, H25 and N24 demonstrated higher survival capacities during gastric digestion than L. rhamnosus GG strain used as control, with H12 and N24 continuing to grow during duodenal digestion. Strains L. rhamnosus F17, N24 and R61 showed adhesion properties to both HT-29 and Caco-2 cells. The ability to attach to the cheese matrix during digestion was confirmed by scanning electron microscopy, also indicating production of extracellular polysaccharides as a response to acid stress. Copyright © 2012 Elsevier Ltd. All rights reserved.

Matrix transformation of Fibonacci band matrix on generalized $bv$-space and its dual spaces

Directory of Open Access Journals (Sweden)

Anupam Das

2018-07-01

Full Text Available In this paper we introduce a new sequence space $bv(\\hat{F}$ by using the Fibonacci band matrix $\\hat{F}.$ We also establish a few inclusion relations concerning this space and determine its $\\alpha-,\\beta-,\\gamma-$duals. Finally we characterize some matrix classes on the space $bv(\\hat{F}.$

Cell–material interactions on biphasic polyurethane matrix

Science.gov (United States)

Dicesare, Patrick; Fox, Wade M.; Hill, Michael J.; Krishnan, G. Rajesh; Yang, Shuying; Sarkar, Debanjan

2013-01-01

Cell–matrix interaction is a key regulator for controlling stem cell fate in regenerative tissue engineering. These interactions are induced and controlled by the nanoscale features of extracellular matrix and are mimicked on synthetic matrices to control cell structure and functions. Recent studies have shown that nanostructured matrices can modulate stem cell behavior and exert specific role in tissue regeneration. In this study, we have demonstrated that nanostructured phase morphology of synthetic matrix can control adhesion, proliferation, organization and migration of human mesenchymal stem cells (MSCs). Nanostructured biodegradable polyurethanes (PU) with segmental composition exhibit biphasic morphology at nanoscale dimensions and can control cellular features of MSCs. Biodegradable PU with polyester soft segment and hard segment composed of aliphatic diisocyanates and dipeptide chain extender were designed to examine the effect polyurethane phase morphology. By altering the polyurethane composition, morphological architecture of PU was modulated and its effect was examined on MSC. Results show that MSCs can sense the nanoscale morphology of biphasic polyurethane matrix to exhibit distinct cellular features and, thus, signifies the relevance of matrix phase morphology. The role of nanostructured phases of a synthetic matrix in controlling cell–matrix interaction provides important insights for regulation of cell behavior on synthetic matrix and, therefore, is an important tool for engineering tissue regeneration. PMID:23255285

heatmaply: an R package for creating interactive cluster heatmaps for online publishing.

Science.gov (United States)

Galili, Tal; O'Callaghan, Alan; Sidi, Jonathan; Sievert, Carson

2018-05-01

heatmaply is an R package for easily creating interactive cluster heatmaps that can be shared online as a stand-alone HTML file. Interactivity includes a tooltip display of values when hovering over cells, as well as the ability to zoom in to specific sections of the figure from the data matrix, the side dendrograms, or annotated labels. Thanks to the synergistic relationship between heatmaply and other R packages, the user is empowered by a refined control over the statistical and visual aspects of the heatmap layout. The heatmaply package is available under the GPL-2 Open Source license. It comes with a detailed vignette, and is freely available from: http://cran.r-project.org/package=heatmaply. tal.galili@math.tau.ac.il. Supplementary data are available at Bioinformatics online.

Automated evaluation of matrix elements between contracted wavefunctions: A Mathematica version of the FRODO program

Science.gov (United States)

Angeli, C.; Cimiraglia, R.

2013-02-01

] hereafter to be referred to as papers I and II, respectively dedicated to the automated evaluation of the matrix elements of the molecular electronic Hamiltonian between internally contracted functions [3] (ICFs). In paper II the program FRODO (after Formal Reduction Of Density Operators) was presented with the purpose of providing working formulas for each occurrence of the ICFs. The original FRODO program was written in the MuPAD computer algebra system [4] and was actively used in our group for the generation of the matrix elements to be employed in the third-order n-electron valence state perturbation theory (NEVPT) [5-8] as well as in the internally contracted configuration interaction (IC-CI) [9]. We present a new version of the program FRODO written in the Mathematica system [10]. The reason for the rewriting of the program lies in the fact that, on the one hand, MuPAD does not seem to be any longer available as a stand-alone system and, on the other hand, Mathematica, due to its ubiquitousness, appears to be increasingly the computer algebra system most widely used nowadays. Restrictions: The program is limited to no more than doubly excited ICFs. Running time: The examples described in the Readme file take a few seconds to run. References: [1] C. Angeli, R. Cimiraglia, Comp. Phys. Comm. 166 (2005) 53. [2] C. Angeli, R. Cimiraglia, Comp. Phys. Comm. 171 (2005) 63. [3] H.-J. Werner, P. J. Knowles, Adv. Chem. Phys. 89 (1988) 5803. [4] B. Fuchssteiner, W. Oevel: http://www.mupad.de Mupad research group, university of Paderborn. Mupad version 2.5.3 for Linux. [5] C. Angeli, R. Cimiraglia, S. Evangelisti, T. Leininger, J.-P. Malrieu, J. Chem. Phys. 114 (2001) 10252. [6] C. Angeli, R. Cimiraglia, J.-P. Malrieu, J. Chem. Phys. 117 (2002) 9138. [7] C. Angeli, B. Bories, A. Cavallini, R. Cimiraglia, J. Chem. Phys. 124 (2006) 054108. [8] C. Angeli, M. Pastore, R. Cimiraglia, Theor. Chem. Acc. 117 (2007) 743. [9] C. Angeli, R. Cimiraglia, Mol. Phys. in press, DOI:10

Influence of water-soluble channeling agents on the release of diclofenac sodium from Irvingia malayana wax matrix tablets.

Science.gov (United States)

Yotsawimonwat, Songwut; Charumanee, Suporn; Kaewvichit, Sayam; Sirithunyalug, Jakkapan; Sirisa-Ard, Panee; Piyamongkol, Sirivipa; Siangwong, Kulthawat

2017-05-01