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Sample records for r matrix

  1. Enhancing an R-matrix

    CERN Document Server

    MacKaay, M A

    1996-01-01

    In order to construct a representation of the tangle category one needs an enhanced R-matrix. In this paper we define a sufficient and necessary condition for enhancement that can be checked easily for any R-matrix. If the R-matrix can be enhanced, we also show how to construct the additional data that define the enhancement. As a direct consequence we find a sufficient condition for the construction of a knot invariant.

  2. The R-matrix theory

    Energy Technology Data Exchange (ETDEWEB)

    Descouvemont, P; Baye, D [Physique Nucleaire Theorique et Physique Mathematique, C.P. 229, Universite Libre de Bruxelles (ULB), B 1050 Brussels (Belgium)], E-mail: pdesc@ulb.ac.be, E-mail: dbaye@ulb.ac.be

    2010-03-15

    The different facets of the R-matrix method are presented pedagogically in a general framework. Two variants have been developed over the years: (i) The 'calculable' R-matrix method is a calculational tool to derive scattering properties from the Schroedinger equation in a large variety of physical problems. It was developed rather independently in atomic and nuclear physics with too little mutual influence. (ii) The 'phenomenological' R-matrix method is a technique to parametrize various types of cross sections. It was mainly (or uniquely) used in nuclear physics. Both directions are explained by starting from the simple problem of scattering by a potential. They are illustrated by simple examples in nuclear and atomic physics. In addition to elastic scattering, the R-matrix formalism is applied to inelastic and radiative-capture reactions. We also present more recent and more ambitious applications of the theory in nuclear physics.

  3. Partitioned R-matrix theory for molecules

    Energy Technology Data Exchange (ETDEWEB)

    Tennyson, Jonathan [Department of Physics and Astronomy, University College London, Gower St., London WC1E 6BT (United Kingdom)

    2004-03-14

    R-matrix calculations usually require all the eigenvalues and eigenvectors of the inner region Hamiltonian matrix. For molecular problems, particularly when large configuration interaction expansions are used for the target, the Hamiltonian matrix is often too large to be completely diagonalized. Berrington and Ballance (2002 J. Phys. B: At. Mol. Opt. Phys. 35 2275) proposed a partitioned R-matrix theory which only required a proportion of the solutions of the Hamiltonian matrix. This theory was implemented and tested in the atomic R-matrix code. The theory is adapted to the needs of R-matrix calculations on low-energy electron-molecule collisions. A number of alternative procedures are tested. The best is shown to give reliable results with explicit inclusion of only a fraction of the solutions. It is shown that with this revised theory the number of solutions required does not depend on the complexity of the target wavefunction even though this strongly influences the size of the final Hamiltonian matrix. This method will be implemented as part of the UK molecular R-matrix program suite.

  4. On the Instanton R-matrix

    CERN Document Server

    Smirnov, Andrey

    2013-01-01

    A torus action on a symplectic variety allows one to construct solutions to the quantum Yang-Baxter equations (R-matrices). For a torus action on cotangent bundles over flag varieties the resulting R-matrices are the standard rational solutions of the Yang-Baxter equation, which are well known in the theory of quantum integrable systems. The torus action on the instanton moduli space leads to more complicated R-matrices, depending additionally on two equivariant parameters t_1 and t_2. In this paper we derive an explicit expression for the R-matrix associated with the instanton moduli space. We study its matrix elements and its Taylor expansion in the powers of the spectral parameter. Certain matrix elements of this R-matrix give a generating function for the characteristic classes of tautological bundles over the Hilbert schemes in terms of the bosonic cut-and-join operators. In particular we rederive from the R-matrix the well known Lehn's formula for the first Chern class. We explicitly compute the first s...

  5. R-matrix calculation for photoionization

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    We have employed the R-matrix method to calculate differe ntial cross sections for photoionization of helium leaving helium ion in an exci ted state for incident photon energy between the N=2 and N=3 thresholds (69~73 eV) of He+ ion. Differential cross sections for photoionization in the N=2 level at emission angle 0° are provide. Our results are in good agreem ent with available experimental data and theoretical calculations.

  6. R-matrix parameters in reactor applications

    Energy Technology Data Exchange (ETDEWEB)

    Hwang, R.N.

    1992-01-01

    The key role of the resonance phenomena in reactor applications manifests through the self-shielding effect. The basic issue involves the application of the microscopic cross sections in the macroscopic reactor lattices consisting of many nuclides that exhibit resonance behavior. To preserve the fidelity of such a effect requires the accurate calculations of the cross sections and the neutron flux in great detail. This clearly not possible without viable resonance data. Recently released ENDF/B VI resonance data in the resolved range especially reflect the dramatic improvement in two important areas; namely, the significant extension of the resolved resonance ranges accompanied by the availability of the R-matrix parameters of the Reich-Moore type. Aside from the obvious increase in computing time required for the significantly greater number of resonances, the main concern is the compatibility of the Riech-Moore representation to the existing reactor processing codes which, until now, are based on the traditional cross section formalisms. This purpose of this paper is to summarize our recent efforts to facilitate implementation of the proposed methods into the production codes at ANL.

  7. An alternative parameterization of R-matrix theory

    Energy Technology Data Exchange (ETDEWEB)

    Brune, C.R

    2003-05-05

    An alternative parameterization of R-matrix theory is described which is mathematically equivalent to the standard approach, but which has no level shifts. The positions and partial widths of an arbitrary number of levels can thus be easily fixed in an analysis. These alternative parameters can be converted to standard R-matrix parameters by a straightforward matrix diagonalization procedure, and a 'level matrix' formulation is possible which allows the collision matrix to be expressed directly in terms of the alternative parameters. The applications to radiative capture reactions and {beta}-delayed particle spectra are briefly discussed.

  8. Derivation of R-matrix from local Hamiltonian density

    CERN Document Server

    Bibikov, P N

    2000-01-01

    A computer algebra algoritm for solving the quantum Yang-Baxter equation is presented. It is based on the Taylor expansion of R-matrix which is developed up to the order \\lambda^6. As an example the classification of 4x4 R-matrices is given.

  9. Widening the Scope of R-matrix Methods

    Energy Technology Data Exchange (ETDEWEB)

    Thompson, Ian J. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Dimitriou, Paraskevi [IAEA, Vienna (Austria); DeBoer, Richard J. [Nieuwland Science Hall, Notre Dame, IN (United States); Kunieda, Satoshi [Nuclear Data Center (JAEA), Tokai (Japan); Paris, Mark [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Thompson, Ian [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Trkov, Andrej [IAEA, Vienna (Austria)

    2016-03-01

    A Consultant’s Meeting was held at the IAEA Headquarters, from 7 to 9 December 2015, to discuss the status of R-matrix codes currently used in calculations of charged-particle induced reaction cross sections at low energies. The ultimate goal was to initiate an international effort, coordinated by the IAEA, to evaluate charged-particle induced reactions in the resolved-resonance region. Participants reviewed the capabilities of the codes, the different implementations of R-matrix theory and translatability of the R-matrix parameters, the evaluation methods and suitable data formats for broader dissemination. The details of the presentations and technical discussions, as well as the actions that were proposed to achieve the goal of the meeting are summarized in this report.

  10. Linear $r$-matrix algebra for classical separable systems

    CERN Document Server

    Eilbeck, J C; Kuznetsov, V B; Tsiganov, A V; Kuznetsov, Vadim B.

    1994-01-01

    We consider a hierarchy of the natural type Hamiltonian systems of $n$ degrees of freedom with polynomial potentials separable in general ellipsoidal and general paraboloidal coordinates. We give a Lax representation in terms of $2\\times 2$ matrices for the whole hierarchy and construct the associated linear $r$-matrix algebra with the $r$-matrix dependent on the dynamical variables. A Yang-Baxter equation of dynamical type is proposed. Using the method of variable separation we provide the integration of the systems in classical mechanics conctructing the separation equations and, hence, the explicit form of action variables. The quantisation problem is discussed with the help of the separation variables.

  11. A graphical R-matrix atomic collision environment

    Science.gov (United States)

    Busby, David William

    [/cal R]-matrix theory has been used effectively to compute properties characterising atomic and molecular collisions. Large Fortran packages have been developed over the past twenty-five years, which are esoteric and can sometimes be difficult to use. The aim of this research is to design and implement, using modern computer science techniques, an environment which will render the packages more straight forward and accessible. It is postulated that the interactive manipulation of graphical abstractions of the underlying physics will allow the user to concentrate on the physics of the process being studied. This approach renders the new [/cal R]-matrix packages simple to use by novice and experienced users alike, thereby improving their usefulness to the physics community. The Graphical [/cal R]-matrix Atomic Collision Environment (G[/cal R]ACE) is comprised of four graphical user interfaces. Grace expedites the construction and editing of input data stipulated by the [/cal R]-matrix program packages. Data can be entered symbolically and is extensively validated, through a series of graphical windows. The generated text file enables the [/cal R]-matrix package to be executed on a remote supercomputer to which the workstation is networked. Connected to a database of Clementi-type orbitals, pseudo facilitates the computation of pseudo-orbitals, incorporated in grace. The H-file [/cal B]rowser displays a graphical abstraction representing the physics of an inner region [/cal R]-matrix computation. This pin-points limitations which may need to be modified to improve the computation. [/cal A]nalysis provides a graphical environment on the local workstation where results of the remote computation may be displayed and interpreted. Eigenphase sums can be displayed graphically as a function of energy, where resonance fits can be performed. [/cal A]nalysis enables further points to be calculated if there is insufficient data. Effective collisions strengths can also be

  12. Using R-matrix Theory to Analyze Resonant Reactions

    Energy Technology Data Exchange (ETDEWEB)

    Hale, G.M. [Theoretical Division Los Alamos National Laboratory (United States)

    2006-07-01

    Full text of publication follows: We begin with a summary of R-matrix theory, formulated in terms of Green's functions that include the Bloch operator to apply the boundary conditions. This is a general approach, not restricted to any particular reaction mechanism, that nevertheless is particularly well-suited to describing resonant reactions. We then give a brief description of the capabilities of the general Los Alamos R-matrix code, EDA. This code can fit the data for any type of measurement for a reaction involving any types of two-body channels (including charged particles and photons), using an automated chi-square minimization algorithm that has quadratic convergence and yields the covariance matrix of the fitting parameters at a local chi-square minimum. This allows covariance information to be produced for the calculated (cross-section) data. As time allows, several examples will be given for light systems, including reactions initiated by n+p ({sup 2}H), n+{sup 6}Li ({sup 7}Li), n+{sup 10}B ({sup 11}B), and n+{sup 16}O ({sup 17}O). These systems have varying numbers of visible resonances, ranging from none in the {sup 2}H system up to many in the {sup 17}O system. However, the same R-matrix approach gives a good description of the data in all cases, several of which were used in the recent IAEA standards evaluation, and in Endf/B7 general-purpose files. Some aspects of the output covariances that result from such R-matrix analyses will be discussed. (authors)

  13. The QB program: Analysing resonances using R-matrix theory

    Science.gov (United States)

    Quigley, Lisa; Berrington, Keith; Pelan, John

    1998-11-01

    A procedure for analysing resonances in atomic and molecular collision theory is programmed, which exploits the analytic properties of R-matrix theory to obtain the energy derivative of the reactance ( K) matrix. This procedure is based on the QB method (J. Phys. B 29 (1996) 4529) which defines matrices Q and B in terms of asymptotic solutions, the R-matrix and energy derivatives, such that d K/d E= B-1Q, from which eigenphase gradients of the K matrix can be obtained. Resonance positions are defined at the points of maximum gradient; resonance widths are related to the inverse of the eigenphase gradients; resonance identifications are estimated from outer region solutions. The program is tested on the twenty lowest Be-like Ne resonances 1 s22 P1/2,3/2nl J - 1° ( n ≤ 10). The test data is incorporated in the Fortran program, which can therefore be compiled and run as it stands; otherwise the program is designed for input of an 'H-file' in the format defined by RMATRX1 (Comput. Phys. Commun. 92 (1995) 290).

  14. Low-temperature chemistry using the R-matrix method

    CERN Document Server

    Tennyson, Jonathan; Rivlin, Tom

    2016-01-01

    Techniques for producing cold and ultracold molecules are enabling the study of chemical reactions and scattering at the quantum scattering limit, with only a few partial waves contributing to the incident channel, leading to the observation and even full control of state-to-state collisions in this regime. A new R-matrix formalism is presented for tackling problems involving low- and ultra-low energy collisions. This general formalism is particularly appropriate for slow collisions occurring on potential energy surfaces with deep wells. The many resonance states make such systems hard to treat theoretically but offer the best prospects for novel physics: resonances are already being widely used to control diatomic systems and should provide the route to steering ultracold reactions. Our R-matrix-based formalism builds on the progress made in variational calculations of molecular spectra by using these methods to provide wavefunctions for the whole system at short internuclear distances, (a regime known as th...

  15. Data Covariances from R-Matrix Analyses of Light Nuclei

    Energy Technology Data Exchange (ETDEWEB)

    Hale, G.M., E-mail: ghale@lanl.gov; Paris, M.W.

    2015-01-15

    After first reviewing the parametric description of light-element reactions in multichannel systems using R-matrix theory and features of the general LANL R-matrix analysis code EDA, we describe how its chi-square minimization procedure gives parameter covariances. This information is used, together with analytically calculated sensitivity derivatives, to obtain cross section covariances for all reactions included in the analysis by first-order error propagation. Examples are given of the covariances obtained for systems with few resonances ({sup 5}He) and with many resonances ({sup 13}C ). We discuss the prevalent problem of this method leading to cross section uncertainty estimates that are unreasonably small for large data sets. The answer to this problem appears to be using parameter confidence intervals in place of standard errors.

  16. R-matrix calculations for few-quark bound states

    Science.gov (United States)

    Shalchi, M. A.; Hadizadeh, M. R.

    2016-10-01

    The R-matrix method is implemented to study the heavy charm and bottom diquark, triquark, tetraquark, and pentaquarks in configuration space, as the bound states of quark-antiquark, diquark-quark, diquark-antidiquark, and diquark-antitriquark systems, respectively. The mass spectrum and the size of these systems are calculated for different partial wave channels. The calculated masses are compared with recent theoretical results obtained by other methods in momentum and configuration spaces and also by available experimental data.

  17. Noncommutative string theory, the R-matrix, and Hopf algebras

    Science.gov (United States)

    Watts, P.

    2000-02-01

    Motivated by the form of the noncommutative /*-product in a system of open strings and Dp-branes with constant nonzero Neveu-Schwarz 2-form, we define a deformed multiplication operation on a quasitriangular Hopf algebra in terms of its R-matrix, and comment on some of its properties. We show that the noncommutative string theory /*-product is a particular example of this multiplication, and comment on other possible Hopf algebraic properties which may underlie the theory.

  18. R-matrix calculations for few-quark bound states

    Energy Technology Data Exchange (ETDEWEB)

    Shalchi, M.A. [Instituto de Fisica Teorica, UNESP, Sao Paulo, SP (Brazil); Hadizadeh, M.R. [Ohio University, Institute of Nuclear and Particle Physics and Department of Physics and Astronomy, Athens, OH (United States); Central State University, College of Science and Engineering, Wilberforce, OH (United States)

    2016-10-15

    The R-matrix method is implemented to study the heavy charm and bottom diquark, triquark, tetraquark, and pentaquarks in configuration space, as the bound states of quark-antiquark, diquark-quark, diquark-antidiquark, and diquark-antitriquark systems, respectively. The mass spectrum and the size of these systems are calculated for different partial wave channels. The calculated masses are compared with recent theoretical results obtained by other methods in momentum and configuration spaces and also by available experimental data. (orig.)

  19. R-matrix theory of driven electromagnetic cavities.

    Science.gov (United States)

    Beck, F; Dembowski, C; Heine, A; Richter, A

    2003-06-01

    The resonances of cylindrical symmetric microwave cavities are analyzed in R-matrix theory, which transforms the input channel conditions to the output channels. Single and interfering double resonances are studied and compared with experimental results obtained with superconducting microwave cavities. Because of the equivalence of the two-dimensional Helmholtz and the stationary Schrödinger equations, the results give insight into the resonance structure of regular and chaotic quantum billiards.

  20. Rational top and its classical r-matrix

    Science.gov (United States)

    Aminov, G.; Arthamonov, S.; Smirnov, A.; Zotov, A.

    2014-08-01

    We construct a rational integrable system (the rational top) on a co-adjoint orbit of SL N Lie group. It is described by the Lax operator with spectral parameter and classical non-dynamical skew-symmetric r-matrix. In the case of the orbit of minimal dimension the model is gauge equivalent to the rational Calogero-Moser (CM) system. To obtain the results we represent the Lax operator of the CM model in two different factorized forms—without spectral parameter (related to the spinless case) and another one with the spectral parameter. The latter gives rise to the rational top while the first one is related to generalized Cremmer-Gervais r-matrices. The gauge transformation relating the rational top and CM model provides the classical rational version of the IRF-Vertex correspondence. From the geometrical point of view it describes the modification of SL(N,{C})-bundles over degenerated elliptic curve. In view of the Symplectic Hecke Correspondence the rational top is related to the rational spin CM model. Possible applications and generalizations of the suggested construction are discussed. In particular, the obtained r-matrix defines a class of KZB equations.

  1. R-Matrix Calculations for Few-Quark Bound States

    CERN Document Server

    Shalchi, M A

    2016-01-01

    The R-matrix method is implemented to study the heavy charm and bottom diquark, triquark, tetraquark and pentaquarks in configuration space, as the bound states of quark-antiquark, diquark-quark, diquark-antidiquark and diquark-antitriquark systems, respectively. The mass spectrum and the size of these systems are calculated for different partial wave channels. The calculated masses are compared with recent theoretical results obtained by %the solution of Lippmann-Schwinger equation other methods in momentum and configuration spaces and also by available experimental data.

  2. BSR: B-spline atomic R-matrix codes

    Science.gov (United States)

    Zatsarinny, Oleg

    2006-02-01

    BSR is a general program to calculate atomic continuum processes using the B-spline R-matrix method, including electron-atom and electron-ion scattering, and radiative processes such as bound-bound transitions, photoionization and polarizabilities. The calculations can be performed in LS-coupling or in an intermediate-coupling scheme by including terms of the Breit-Pauli Hamiltonian. New version program summaryTitle of program: BSR Catalogue identifier: ADWY Program summary URL:http://cpc.cs.qub.ac.uk/summaries/ADWY Program obtainable from: CPC Program Library, Queen's University of Belfast, N. Ireland Computers on which the program has been tested: Microway Beowulf cluster; Compaq Beowulf cluster; DEC Alpha workstation; DELL PC Operating systems under which the new version has been tested: UNIX, Windows XP Programming language used: FORTRAN 95 Memory required to execute with typical data: Typically 256-512 Mwords. Since all the principal dimensions are allocatable, the available memory defines the maximum complexity of the problem No. of bits in a word: 8 No. of processors used: 1 Has the code been vectorized or parallelized?: no No. of lines in distributed program, including test data, etc.: 69 943 No. of bytes in distributed program, including test data, etc.: 746 450 Peripherals used: scratch disk store; permanent disk store Distribution format: tar.gz Nature of physical problem: This program uses the R-matrix method to calculate electron-atom and electron-ion collision processes, with options to calculate radiative data, photoionization, etc. The calculations can be performed in LS-coupling or in an intermediate-coupling scheme, with options to include Breit-Pauli terms in the Hamiltonian. Method of solution: The R-matrix method is used [P.G. Burke, K.A. Berrington, Atomic and Molecular Processes: An R-Matrix Approach, IOP Publishing, Bristol, 1993; P.G. Burke, W.D. Robb, Adv. At. Mol. Phys. 11 (1975) 143; K.A. Berrington, W.B. Eissner, P.H. Norrington, Comput

  3. A flexible R package for nonnegative matrix factorization

    Directory of Open Access Journals (Sweden)

    Seoighe Cathal

    2010-07-01

    Full Text Available Abstract Background Nonnegative Matrix Factorization (NMF is an unsupervised learning technique that has been applied successfully in several fields, including signal processing, face recognition and text mining. Recent applications of NMF in bioinformatics have demonstrated its ability to extract meaningful information from high-dimensional data such as gene expression microarrays. Developments in NMF theory and applications have resulted in a variety of algorithms and methods. However, most NMF implementations have been on commercial platforms, while those that are freely available typically require programming skills. This limits their use by the wider research community. Results Our objective is to provide the bioinformatics community with an open-source, easy-to-use and unified interface to standard NMF algorithms, as well as with a simple framework to help implement and test new NMF methods. For that purpose, we have developed a package for the R/BioConductor platform. The package ports public code to R, and is structured to enable users to easily modify and/or add algorithms. It includes a number of published NMF algorithms and initialization methods and facilitates the combination of these to produce new NMF strategies. Commonly used benchmark data and visualization methods are provided to help in the comparison and interpretation of the results. Conclusions The NMF package helps realize the potential of Nonnegative Matrix Factorization, especially in bioinformatics, providing easy access to methods that have already yielded new insights in many applications. Documentation, source code and sample data are available from CRAN.

  4. R-matrix and K-matrix analysis of elastic $\\alpha - \\alpha$ scattering

    CERN Document Server

    Humblet, J; Langanke, K

    1998-01-01

    The R- and K-matrix parametrizations are analyzed and compared for the elastic alpha-alpha scattering at center-of-mass energies below 40 MeV. The two parametrizations differ in their definitions of the resonance energy which can lead to quite different results. The physical values of the best-fit parameters are compared with those computed for a potential model. The existence of a broad resonance near 9 MeV is not supported by the data or by the potential model. We discuss the positive and negative aspects for both parametrizations.

  5. R-matrix calculations in support of impurity influx measurements

    Science.gov (United States)

    Ballance, C. P.

    2016-09-01

    The RMPS (R-Matrix with Pseudo-States) method has been used with great success in the calculation of the collisional data for light fusion-related elements such as helium, beryllium or neon, both in terms of electron-impact excitation and also ground, metastable, and excited state ionisation. However, more complex atomic species such as Molybdenum and Tungsten have been choosen as plasma-facing elements in several tokamak experiments such as NSTX-U. During plasma operation there is an inevitable degree of wall erosion and therefore the determination of this impurity-influx rate from vessel walls needs to be characterized. In terms of atomic physics, this erosion rate can be determined from an SXB ratio and spectroscopic measurements of emitted line radiation. The SXB ratio is generated using a combination of electron-impact ionisation, excitation and the underlying atomic structure transition probabilities. The groundstate of Mo I and Mo II being half-open d shell systems quickly give rise to 100s of levels, and therefore the resulting spectral lines from the neutral and singly ionised species provides a convoluted picture. Therefore, subject to the constraints of spectrometer used, theoretically we are able to survey our structure and collisional calculations and pro-actively suggest particular diagnostic lines. There have been previous R-matrix calculations in LS coupling used for modelling of Mo, with mixed results, however it is hoped that this project shall resolve those differences. A method shall be presented that we use to determine which lines are most beneficial for analysis. I will present current electron-impact excitation and ionisation results for both neutral and singly ionised molybdenum.

  6. Rational Top and its Classical R-matrix

    CERN Document Server

    Aminov, G; Smirnov, A; Zotov, A

    2014-01-01

    We construct a rational integrable system (the rational top) on a coadjoint orbit of ${\\rm SL}_N$ Lie group. It is described by the Lax operator with spectral parameter and classical non-dynamical skew-symmetric $r$-matrix. In the case of the orbit of minimal dimension the model is gauge equivalent to the rational Calogero-Moser (CM) system. To obtain the results we represent the Lax operator of the CM model in two different factorized forms -- without spectral parameter (related to spinless case) and another one with the spectral parameter. The later gives rise to the rational top while the first one is related to generalized Cremmer-Gervais $r$-matrices. The gauge transformation relating the rational top and CM model provides a classical rational version of the IRF-Vertex correspondence. From a geometrical point of view it describes the modification of ${\\rm SL}(N,\\mathbb C)$-bundles over degenerated elliptic curve. In view of Symplectic Hecke Correspondence the rational top is related to the rational spin ...

  7. R-matrix theory with Dirichlet boundary conditions for integrable electron waveguides

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Hoshik [Department of Physics, College of William and Mary, Williamsburg, VA 23187 (United States); Reichl, L E, E-mail: hoshik.lee@wm.ed, E-mail: reichl@physics.utexas.ed [Center for Complex Quantum Systems, University of Texas at Austin, Austin, TX 78712 (United States)

    2010-10-08

    R-matrix theory is used to compute transmission properties of a T-shaped electron waveguide and an electron waveguide-based rotation gate by using Dirichlet boundary conditions for reaction region basis states, even at interfaces with external leads. Such boundary conditions have been known to cause R-matrix convergence problems. We show that an R-matrix obtained using Dirichlet boundary conditions can be convergent for some cases. We also show that R-matrix theory can efficiently reproduce results that were obtained using far more computationally demanding methods such as mode matching techniques, tight-binding Green's function methods or the finite element methods.

  8. R&D of MCFC matrix for long term operation

    Energy Technology Data Exchange (ETDEWEB)

    Nishimura, Takashi; Fujita, Yoji; Urushibata, Hiroaki; Sasaki, Akira [Mitsubishi Electric Corp., Hyogo (Japan)

    1996-12-31

    Long term operation is an essential subject in the commercialization of the Molten Carbonate Fuel Cell (MCFC). Material stability is important for the development of the MCFC. particularly for long term operation. In this paper, the specification and the stabilization of MCFC matrix arc investigated, with the aim of producing 40000 hours of operation. It is common knowledge that matrix thickness has a large influence on shorting time, as shorting is caused by the dissolution of the nickel oxide cathodes. Therefore, the optimum thickness of a matrix designed for 40000 hours operation without the nickel shorting was sought. The influences of different electrolytes and matrix specifications on the shorting time were measured with accelerated cell tests. The internal resistance of the matrix was also estimated. Gamma( {gamma} )-lithium aluminate (LiAlO{sub 2}) powder with a sub-micron particle diameter is commonly used for a raw material of matrix to retain molten carbonate electrolytes. This is because most researchers found that {gamma}-LiA1O{sub 2} was the most stable material in the MCFC environment among the three allotropic forms alpha ( {alpha} ), beta ( {beta} ), and {gamma}. However. two problems with the stability of {gamma} -LiAlO{sub 2} are being vigorously discussed. especially in Japan: particle growth causes decreasing electrolyte retention, and the transformation of {gamma} to {alpha}. This transformation contradicts the accepted opinion that {gamma} is the most stable form. In this paper, the particle growth and the phase transformation of LiAlO{sub 2} are examined with post-test analyses. The influence of matrix degradation on cell performance is also considered.

  9. r-Matrix Structure for a Restricted Flow with Bargmann Constraint

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    This paper deals with the integrability of a finite-dimensional Hamiltonian system linked with the generalized coupled KdV hierarchy. For this purpose the associated Lax representation is presented after an elementary calculation. It is shown that the Lax representation enjoys a dynamical r-matrix formula instead of a classical one in the Poisson bracket on R2N. Consequently the resulting system is proved to be completely integrable in view of its r-matrix structure.

  10. Effective field theory as a limit of R-matrix theory for light nuclear reactions

    Science.gov (United States)

    Hale, Gerald M.; Brown, Lowell S.; Paris, Mark W.

    2014-01-01

    We study the zero channel radius limit of Wigner's R-matrix theory for two cases and show that it corresponds to nonrelativistic effective quantum field theory. We begin with the simple problem of single-channel np elastic scattering in the 1S0 channel. The dependence of the R-matrix width g2 and level energy Eλ on the channel radius a for fixed scattering length a0 and effective range r0 is determined. It is shown that these quantities have a simple pole for a critical value of the channel radius, ap=ap(a0,r0). The 3H(d ,n)4He reaction cross section, analyzed with a two-channel effective field theory in the previous paper [Phys. Rev. C 89, 014622 (2014), 10.1103/PhysRevC.89.014622], is then examined using a two-channel, single-level R-matrix parametrization. The resulting S matrix is shown to be identical in these two representations in the limit that R-matrix channel radii are taken to zero. This equivalence is established by giving the relationship between the low-energy constants of the effective field theory (couplings gc and mass m*) and the R-matrix parameters (reduced width amplitudes γc and level energy Eλ). An excellent three-parameter fit to the observed astrophysical factor S¯ is found for "unphysical" values of the reduced widths, γc2<0.

  11. The classical r-matrix method for nonlinear sigma-model

    OpenAIRE

    Sevostyanov, Alexey

    1995-01-01

    The canonical Poisson structure of nonlinear sigma-model is presented as a Lie-Poisson r-matrix bracket on coadjoint orbits. It is shown that the Poisson structure of this model is determined by some `hidden singularities' of the Lax matrix.

  12. SAMDIST: A Computer Code for Calculating Statistical Distributions for R-Matrix Resonance Parameters

    Energy Technology Data Exchange (ETDEWEB)

    Leal, L.C.

    1995-01-01

    The: SAMDIST computer code has been developed to calculate distribution of resonance parameters of the Reich-Moore R-matrix type. The program assumes the parameters are in the format compatible with that of the multilevel R-matrix code SAMMY. SAMDIST calculates the energy-level spacing distribution, the resonance width distribution, and the long-range correlation of the energy levels. Results of these calculations are presented in both graphic and tabular forms.

  13. SAMDIST A Computer Code for Calculating Statistical Distributions for R-Matrix Resonance Parameters

    CERN Document Server

    Leal, L C

    1995-01-01

    The: SAMDIST computer code has been developed to calculate distribution of resonance parameters of the Reich-Moore R-matrix type. The program assumes the parameters are in the format compatible with that of the multilevel R-matrix code SAMMY. SAMDIST calculates the energy-level spacing distribution, the resonance width distribution, and the long-range correlation of the energy levels. Results of these calculations are presented in both graphic and tabular forms.

  14. Effective field theory as a limit of R-matrix theory for light nuclear reactions

    CERN Document Server

    Hale, Gerald M; Paris, Mark W

    2014-01-01

    We study the zero channel radius limit of Wigner's R-matrix theory for two cases, and show that it corresponds to non-relativistic effective quantum field theory. We begin with the simple problem of single-channel n-p elastic scattering in the 1S0 channel. The dependence of the R matrix width and level energy on the channel radius, "a" for fixed scattering length a0 and effective range r0 is determined. It is shown that these quantities have a simple pole for a critical value of the channel radius. The 3H(d,n)4He reaction cross section, analyzed with a two-channel effective field theory in the previous paper, is then examined using a two-channel, single-level R-matrix parametrization. The resulting S matrix is shown to be identical in these two representations in the limit that R-matrix channel radii are taken to zero. This equivalence is established by giving the relationship between the low-energy constants of the effective field theory (couplings and mass) and the R-matrix parameters (reduced width amplitu...

  15. SparseM: A Sparse Matrix Package for R *

    Directory of Open Access Journals (Sweden)

    Roger Koenker

    2003-02-01

    Full Text Available SparseM provides some basic R functionality for linear algebra with sparse matrices. Use of the package is illustrated by a family of linear model fitting functions that implement least squares methods for problems with sparse design matrices. Significant performance improvements in memory utilization and computational speed are possible for applications involving large sparse matrices.

  16. Quantum Yang-Baxter equation and constant R-matrix over Grassmann algebra

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    Constant solutions to Yang-Baxter equation are investigated over Grassmann algebra for the case of 6-vertex R-matrix.The general classification of all possible solutions over Grassmann algebra and particular cases with 2,3,4 generators are studied.As distinct from the standard case, when R-matrix over number field can have a maximum 5 nonvanishing elements, we obtain over Grassmann algebra a set of new full 6-vertex solutions. The solutions leading to regular R-matrices which appear in weak Hopf algebras are considered.

  17. R-matrix quantization of the elliptic Ruijsenaars-Schneider model

    Energy Technology Data Exchange (ETDEWEB)

    Arutyunov, G.E.; Chekhov, L.O.; Frolov, S.A. [Steklov Math. Inst., Moscow (Russian Federation)

    1998-03-01

    It is shown that the classical L-operator algebra of the elliptic Ruijsenaars-Schneider model can be realized as a subalgebra of the algebra of functions on the cotangent bundle over the centrally extended current group in two dimensions. It is governed by two dynamical r and anti r-matrices satisfying a closed system of equations. The corresponding quantum R and anti R-matrices are found as solutions to quantum analogs of these equations. We present the quantum L-operator algebra and show that the system of equations on R and anti R arises as the compatibility condition for this algebra. It turns out that the R-matrix is twist-equivalent to the Felder elliptic R{sup F}-matrix with anti R playing the role of the twist. The simplest representation of the quantum L-operator algebra corresponding to the elliptic Ruijsenaars-Schneider model is obtained.The connection of the quantum L-operator algebra to the fundamental relation RLL=LLR with Belavin`s elliptic R matrix is established. As a byproduct of our construction, we find a new N-parameter elliptic solution to the classical Yang-Baxter equation. (orig.) 38 refs.

  18. An R-matrix package for coupled-channel problems in nuclear physics

    CERN Document Server

    Descouvemont, P

    2015-01-01

    We present an $R$-matrix Fortran package to solve coupled-channel problems in nuclear physics. The basis functions are chosen as Lagrange functions, which permits simple calculations of the matrix elements. The main input are the coupling potentials at some nucleus-nucleus distances, specified by the program. The program provides the collision matrix and, optionally, the associated wave function. The present method deals with open and closed channels simultaneously, without numerical instability associated with closed channels. It can also solve coupled-channel problems for non-local potentials. Long-range potentials can be treated with propagation techniques, which significantly speed up the calculations. We first present an overview of the $R$-matrix theory, and of the Lagrange-mesh method. A description of the package and its installation on a UNIX machine is then provided. Finally, five typical examples are discussed.

  19. A Unisonant r-Matrix Structure of Integrable Systems and Its Reductions

    Institute of Scientific and Technical Information of China (English)

    QIAO Zhi-Jun; Walter STRAMPP

    2000-01-01

    A new method is presented to generate finite dimensional integrable systems. Our starting point is a generalized Lax matrix instead of usual Lax pair. Then a unisonant r-matrix structure and a set of generalized Hamiltonian functions are constructed. It can be clearly seen that various constrained integrable flows by nonlinearization method, such as the c-AKNS, c-MKdV, c-Toda, etc., are derived from the reduction of this structure. Furthermore, some new integrable flows are produced

  20. Application of the R-matrix method to Photoionization of Molecules

    CERN Document Server

    Tashiro, Motomichi

    2010-01-01

    The R-matrix method has been used for theoretical calculation of electron collision with atoms and molecules for long years. The method was also formulated to treat photoionization process, however, its application has been mostly limited to photoionization of atoms. In this work, we implement the R-matrix method to treat molecular photoionization problem based on the UK R-matrix codes. This method can be used for diatomic as well as polyatomic molecules, with multi-configurational description for electronic states of both target neutral molecule and product molecular ion. Test calculations were performed for valence electron photoionization of nitrogen (N2) as well as nitric oxide (NO) molecules. Calculated photoionization cross sections and asymmetry parameters agree reasonably well with the available experimental results, suggesting usefulness of the method for molecular photoionization.

  1. Generalized Fourier-grid R-matrix theory: a discrete Fourier-Riccati-Bessel transform approach

    Energy Technology Data Exchange (ETDEWEB)

    Layton, E.G. (Joint Inst. for Lab. Astrophysics, Boulder, CO (United States)); Stade, E. (Colorado Univ., Boulder, CO (United States). Dept. of Mathematics)

    1993-08-28

    We present the latest developments in the Fourier-grid R-matrix theory of scattering. These developments are based on the generalized Fourier-grid formalism and use a new type of extended discrete Fourier transform: the discrete Fourier-Riccati-Bessel transform. We apply this new R-matrix approach to problems of potential scattering, to demonstrate how this method reduces computational effort by incorporating centrifugal effects into the representation. As this technique is quite new, we have hopes to broaden the formalism to many types of problems. (author).

  2. Double ionization in R -matrix theory using a two-electron outer region

    Science.gov (United States)

    Wragg, Jack; Parker, J. S.; van der Hart, H. W.

    2015-08-01

    We have developed a two-electron outer region for use within R -matrix theory to describe double ionization processes. The capability of this method is demonstrated for single-photon double ionization of He in the photon energy region between 80 and 180 eV. The cross sections are in agreement with established data. The extended R -matrix with time dependence method also provides information on higher-order processes, as demonstrated by the identification of signatures for sequential double ionization processes involving an intermediate He+ state with n =2 .

  3. R-matrix theory of atomic collisions. Application to atomic, molecular and optical processes

    Energy Technology Data Exchange (ETDEWEB)

    Burke, Philip G. [Queen' s Univ., Belfast (United Kingdom). School of Mathematics and Physics

    2011-07-01

    Commencing with a self-contained overview of atomic collision theory, this monograph presents recent developments of R-matrix theory and its applications to a wide-range of atomic molecular and optical processes. These developments include electron and photon collisions with atoms, ions and molecules required in the analysis of laboratory and astrophysical plasmas, multiphoton processes required in the analysis of superintense laser interactions with atoms and molecules and positron collisions with atoms and molecules required in antimatter studies of scientific and technological importance. Basic mathematical results and general and widely used R-matrix computer programs are summarized in the appendices. (orig.)

  4. R-Matrix Theory of Atomic Collisions Application to Atomic, Molecular and Optical Processes

    CERN Document Server

    Burke, Philip George

    2011-01-01

    Commencing with a self-contained overview of atomic collision theory, this monograph presents recent developments of R-matrix theory and its applications to a wide-range of atomic molecular and optical processes. These developments include electron and photon collisions with atoms, ions and molecules required in the analysis of laboratory and astrophysical plasmas, multiphoton processes required in the analysis of superintense laser interactions with atoms and molecules and positron collisions with atoms and molecules required in antimatter studies of scientific and technologial importance. Basic mathematical results and general and widely used R-matrix computer programs are summarized in the appendices.

  5. Center of the quantum affine vertex algebra associated with trigonometric R-matrix

    Science.gov (United States)

    Kožić, Slaven; Molev, Alexander

    2017-08-01

    We consider the quantum vertex algebra associated with the trigonometric R-matrix in type A as defined by Etingof and Kazhdan. We show that its center is a commutative associative algebra and construct an algebraically independent family of topological generators of the center at the critical level.

  6. Classical R-matrix theory of dispersionless systems: I. (1+1)-dimension theory

    Energy Technology Data Exchange (ETDEWEB)

    Blaszak, Maciej; Szablikowski, Blazej M [Institute of Physics, A Mickiewicz University, Umultowska 85, 61-614 Poznan (Poland)

    2002-12-06

    A systematic way of construction of (1+1)-dimensional dispersionless integrable Hamiltonian systems is presented. The method is based on the classical R-matrix on Poisson algebras of formal Laurent series. Results are illustrated with the known and new (1+1)-dimensional dispersionless systems.

  7. Classical R-matrix theory of dispersionless systems: II. (2+1) dimension theory

    Energy Technology Data Exchange (ETDEWEB)

    Blaszak, Maciej; Szablikowski, Blazej M [Institute of Physics, A Mickiewicz University, Umultowska 85, 61-614 Poznan (Poland)

    2002-12-06

    A systematic way of constructing (2+1)-dimensional dispersionless integrable Hamiltonian systems is presented. The method is based on the so-called central extension procedure and classical R-matrix applied to the Poisson algebras of formal Laurent series. Results are illustrated with the known and new (2+1)-dimensional dispersionless systems.

  8. A two-channel R-matrix analysis of magnetic field induced Feshbach resonances

    DEFF Research Database (Denmark)

    Nygaard, Nicolai; Schneider, B. I.; Julienne, P. S.

    2006-01-01

    such an effective Feshbach model can be constructed from knowledge of a few key parameters, characterizing the atomic Born-Oppenheimer potentials and the low energy scattering near the resonance. These parameters may be obtained either from experiment or full coupled channels calculations. Using R-matrix theory we...

  9. Level-resolved R-matrix calculations for the electron-impact excitation of Ne3+ and Ne6+

    Science.gov (United States)

    Ludlow, J. A.; Lee, T. G.; Ballance, C. P.; Loch, S. D.; Pindzola, M. S.

    2011-08-01

    Large-scale R-matrix calculations are carried out for the electron-impact excitation of Ne3+ and Ne6+. For Ne3+, a 581-LSJ-level R-matrix intermediate coupling frame transformation calculation is made for excitations up to the n=4 shell. For some transitions, large effective collision strength differences are found with current 23-jKJ-level Breit-Pauli R-matrix and earlier 22-LSJ-level R-matrix jj omega (JAJOM) calculations. For Ne6+, a 171-jKJ-level Breit-Pauli R-matrix calculation is made for excitations up to the n=5 shell. For some transitions, large effective collision strength differences are found with current 46-jKJ-level Breit-Pauli R-matrix and earlier 46-LSJ-level R-matrix JAJOM calculations. Together with existing R-matrix calculations for other ion stages, high-quality excitation data are now available for astrophysical and laboratory plasma modeling along the entire Ne isonuclear sequence.

  10. R-Matrix Codes for Charged-particle Induced Reactionsin the Resolved Resonance Region

    Energy Technology Data Exchange (ETDEWEB)

    Leeb, Helmut [Technical Univ. of Wien, Vienna (Austria); Dimitriou, Paraskevi [Intl Atomic Energy Agency (IAEA), Vienna (Austria); Thompson, Ian J. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2017-01-01

    A Consultant’s Meeting was held at the IAEA Headquarters, from 5 to 7 December 2016, to discuss the status of R-matrix codes currently used in calculations of charged-particle induced reaction cross sections at low energies. The meeting was a follow-up to the R-matrix Codes meeting held in December 2015, and served the purpose of monitoring progress in: the development of a translation code to enable exchange of input/output parameters between the various codes in different formats, fitting procedures and treatment of uncertainties, the evaluation methodology, and finally dissemination. The details of the presentations and technical discussions, as well as additional actions that were proposed to achieve all the goals of the meeting are summarized in this report.

  11. K-Shell Photoionization of Nickel Ions Using R-Matrix

    Science.gov (United States)

    Witthoeft, M. C.; Bautista, M. A.; Garcia, J.; Kallman, T. R.; Mendoza, C.; Palmeri, P.; Quinet, P.

    2011-01-01

    We present R-matrix calculations of photoabsorption and photoionization cross sections across the K edge of the Li-like to Ca-like ions stages of Ni. Level-resolved, Breit-Pauli calculations were performed for the Li-like to Na-like stages. Term-resolved calculations, which include the mass-velocity and Darwin relativistic corrections, were performed for the Mg-like to Ca-like ion stages. This data set is extended up to Fe-like Ni using the distorted wave approximation as implemented by AUTOSTRUCTURE. The R-matrix calculations include the effects of radiative and Auger dampings by means of an optical potential. The damping processes affect the absorption resonances converging to the K thresholds causing them to display symmetric profiles of constant width that smear the otherwise sharp edge at the K-shell photoionization threshold. These data are important for the modeling of features found in photoionized plasmas.

  12. Ab initio verification of the analytical R-matrix theory for strong field ionization

    Science.gov (United States)

    Torlina, Lisa; Morales, Felipe; Muller, H. G.; Smirnova, Olga

    2014-10-01

    We summarize the key aspects of the recently developed analytical R-matrix (ARM) theory for strong field ionization (Torlina and Smirnova 2012 Phys. Rev. A 86 043408; Kaushal and Smirnova 2013 Phys. Rev. A 88 013421), and present tests of this theory using ab initio numerical simulations for hydrogen and helium atoms in long circularly polarized laser pulses. We find excellent agreement between the predictions of ARM and the numerical calculations.

  13. $_{3}$F$_{2}$(1) hypergeometric function and quadratic R-matrix algebra

    CERN Document Server

    Kuznetsov, V B

    1994-01-01

    We construct a class of representations of the quadratic R-matrix algebra, given by the reflection equation with the spectral parameter, in terms of certain ordinary difference operators. These operators turn out to act as parameter shifting operators on the 3_F_2(1) hypergeometric function and its limit cases and on classical orthogonal polynomials. The relationship with the factorization method will be discussed.

  14. The universal R-matrix for the jordanian deformation of sl(2), and the contracted forms of SO(4)

    CERN Document Server

    Shariati, A; Khorrami, M

    1995-01-01

    We introduce a universal R matrix for the Jordanian deformation of \\U{ \\sl(2)}. Using \\Uh{\\so(4)}=\\Uh{\\sl(2)} \\oplus {\\rm U}_{-h}(\\sl(2)) we obtain the universal R matrix for \\Uh{\\so(4)}. Applying the graded contractions on the universal R matrix of \\Uh{\\so(4)}, we show that there exist three distinct R matrices for all of the contracted algebras. It is shown that \\Uh{\\sl(2)}, \\Uh{\\so(4)}, and all of these contracted algebras are triangular.

  15. R-matrix calculations of electron impact electronic excitation of BeH

    Science.gov (United States)

    Darby-Lewis, Daniel; Mašín, Zdeněk; Tennyson, Jonathan

    2017-09-01

    The R-matrix method is used to perform high-level calculations of electron collisions with beryllium mono-hydride at its equilibrium geometry with a particular emphasis on electron impact electronic excitation. Several target and scattering models are considered. The calculations were performed using (1) the UKRMol suite which relies on the use of Gaussian type orbitals (GTOs) to represent the continuum and (2) using the new UKRMol+ suite which allows the inclusion of B-spline type orbitals in the basis for the continuum. The final close-coupling scattering models used the UKRMol+ code and a frozen core, valence full configuration interaction, method based on a diffuse GTO atomic basis set. The calculated electronic properties of the molecule are in very good agreement with state-of-the-art electronic structure calculations. The use of the UKRMol+ suite proved critical since it allowed the use of a large R-matrix sphere (35 Bohr), necessary to contain the diffuse electronic states of the molecule. The corresponding calculations using UKRMol are not possible due to numerical problems associated with the combination of GTO-only continuum and a large R-matrix sphere. This work provides the first demonstration of the utility and numerical stability of the new UKRMol+ code. The inelastic cross sections obtained here present a significant improvement over the results of earlier studies on BeH.

  16. The Yangian of sl(n|m) and the universal R-matrix

    CERN Document Server

    Rej, Adam

    2010-01-01

    In this paper we study Yangians of sl(n|m) superalgebras. We derive the universal R-matrix and evaluate it on the fundamental representation obtaining the standard Yang R-matrix with unitary dressing factors. For m=0, we directly recover up to a CDD factor the well-known S-matrices for relativistic integrable models with su(N) symmetry. Hence, the universal R-matrix found provides an abstract plug-in formula, which leads to results obeying fundamental physical constraints: crossing symmetry, unitrarity and the Yang-Baxter equation. This implies that the Yangian double unifies all desired symmetries into one algebraic structure. In particular, our analysis is valid in the case of sl(n|n), where one has to extend the algebra by an additional generator leading to the algebra gl(n|n). We find two-parameter families of scalar factors in this case and provide a detailed study for gl(1|1).

  17. Multi-parametric R-matrix for the sl(2|1) Yangian

    CERN Document Server

    Babichenko, Andrei

    2012-01-01

    We study the Yangian of the sl(2|1) Lie superalgebra in a multi-parametric four-dimensional representation. We use Drinfeld's second realization to derive the R-matrix, the antiparticle representation, the crossing and unitarity condition. We consistently apply the Yangian antipode and its inverse to the individual particles involved in the scattering. We explicitly find a scalar factor solving the crossing and unitarity conditions. The formulas we obtain bear some similarities with those familiar from the study of integrable structures in the AdS/CFT correspondence, although they present obvious crucial differences.

  18. Double Ionisation in R-Matrix Theory Using a 2-electron Outer Region

    CERN Document Server

    Wragg, Jack; van der Hart, H W

    2015-01-01

    We have developed a two-electron outer region for use within R-matrix theory to describe double ionisation processes. The capability of this method is demonstrated for single-photon double ionisation of He in the photon energy region between 80 eV to 180 eV. The cross sections are in agreement with established data. The extended RMT method also provides information on higher-order processes, as demonstrated by the identification of signatures for sequential double ionisation processes involving an intermediate He$^{+}$ state with $n=2$.

  19. Internal and external radiative widths in the combined R-matrix and potential model formalism

    CERN Document Server

    Mukhamedzhanov, A M; Bertulani, C A; Hao, T V Nhan

    2016-01-01

    Using the $R$-matrix approach we calculate the radiative width for a resonance decaying to a bound state through electric dipole, $E1$, transitions. The total radiative width is determined by the interference of the nuclear internal and external radiative width amplitudes. For a given channel radius the external radiative width amplitude is model independent and is determined by the asymptotic normalization coefficient (ANC) of the bound state to which the resonance decays. It also depends on the partial resonance width. To calculate the internal radiative width amplitude we show that a single particle potential model is appropriate. We compare our results with a few experimental data.

  20. Bethe Ansatz for Supersymmetric Model Constructed from Uq[osp(2|2)(2)] R-Matrix

    Institute of Scientific and Technical Information of China (English)

    YANG Wen-Li; ZHEN Yi

    2001-01-01

    Using the algebraic Bethe ansatz method, we obtain the eigenvalues of transfer matrix of the supersymmetric model constructed from the R-matrix of the twisted affine superalgebra Uq[osp(2|2)(2)] in periodic boundary condition and twisted boundary condition.``

  1. Ultem((R))/ZIF-8 mixed matrix hollow fiber membranes for CO2/N-2 separations

    Energy Technology Data Exchange (ETDEWEB)

    Dai, Y; Johnson, JR; Karvan, O; Sholl, DS; Koros, WJ

    2012-05-15

    Organic-inorganic hybrid (mixed matrix) membranes can potentially extend the separation performance of traditional polymeric materials while maintaining processing convenience. Although many dense films studies have been reported, there have been few reported cases of these materials being successfully extended to asymmetric hollow fibers. In this work we report the first successful production of mixed matrix asymmetric hollow fiber membranes containing metal-organic-framework (MOF) ZIF-8 fillers. Specifically, we have incorporated ZIF-8 into a polyetherimide (Ultem((R)) 1000) matrix and produced dual-layer asymmetric hollow fiber membranes via the dry jet-wet quench method. The outer separating layer of these composite fibers contains 13 wt% (17 vol%) of ZIF-8 filler. These membranes have been tested over a range of temperatures and pressures for a variety of gas pairs. An increase in separation performance for the CO2/N-2 gas pairs was observed for both pure gas and mixed gas feeds. (C) 2012 Elsevier B.V. All rights reserved.

  2. MiR-15a-5p regulates viability and matrix degradation of human osteoarthritis chondrocytes via targeting VEGFA.

    Science.gov (United States)

    Chen, Hongwei; Tian, Yun

    2017-01-16

    Previous studies demonstrated that miR-15a-5p was probably associated with human hepatocellular carcinoma, while the function of miR-15a-5p in OA (Osteoarthritis) still remains unknown. Here, we uncovered the potential role of miR-15a-5p on OA pathogenesis and confirmed its predicted target VEGFA (Vascular Endothelial Growth Factor A). Measured by RT-PCR, miR-15a-5p expression increased remarkably while VEGFA expression was significantly decreased in OA chondrocytes compared with normal conditions. According to Luciferase activity assay, miR-15a-5p directly targeted the 3'-UTR of VEGFA to inhibit its expression. Functional analysis including CCK-8 assay and flow cytometry revealed that overexpression of VEGFA or inhibition of miR-15a-5p promoted cell proliferation, suppressed cell apoptosis and reduced matrix degradation in OA chondrocytes. Moreover, rescue assays carried out with both expression of VEGFA and miR-15a-5p demonstrated that miR-15a-5p contributes to cell apoptosis and matrix degradation via inhibiting VEGFA. We further provided evidence that multiple proteins related to matrix synthesis were regulated by miR-15a-5p and VEGFA using Western blot and ELISA assays. Taken together, our findings elucidated an underlying mechanism by which miR-15a-5p regulates viability and matrix degradation of OA and indicated a new target for OA diagnosis and therapy.

  3. IL‐6 Regulates Extracellular Matrix Remodeling Associated With Aortic Dilation in a Fibrillin‐1 Hypomorphic mgR/mgR Mouse Model of Severe Marfan Syndrome

    Science.gov (United States)

    Ju, Xiaoxi; Ijaz, Talha; Sun, Hong; LeJeune, Wanda; Vargas, Gracie; Shilagard, Tuya; Recinos, Adrian; Milewicz, Dianna M.; Brasier, Allan R.; Tilton, Ronald G.

    2014-01-01

    Background Development of thoracic aortic aneurysms is the most significant clinical phenotype in patients with Marfan syndrome. An inflammatory response has been described in advanced stages of the disease. Because the hallmark of vascular inflammation is local interleukin‐6 (IL‐6) secretion, we explored the role of this proinflammatory cytokine in the formation of aortic aneurysms and rupture in hypomorphic fibrillin‐deficient mice (mgR/mgR). Methods and Results MgR/mgR mice developed ascending aortic aneurysms with significant dilation of the ascending aorta by 12 weeks (2.7±0.1 and 1.3±0.1 for mgR/mgR versus wild‐type mice, respectively; P<0.001). IL‐6 signaling was increased in mgR/mgR aortas measured by increases in IL‐6 and SOCS3 mRNA transcripts (P<0.05) and in cytokine secretion of IL‐6, MCP‐1, and GM‐CSF (P<0.05). To investigate the role of IL‐6 signaling, we generated mgR homozygous mice with IL‐6 deficiency (DKO). The extracellular matrix of mgR/mgR mice showed significant disruption of elastin and the presence of dysregulated collagen deposition in the medial‐adventitial border by second harmonic generation multiphoton autofluorescence microscopy. DKO mice exhibited less elastin and collagen degeneration than mgR/mgR mice, which was associated with decreased activity of matrix metalloproteinase‐9 and had significantly reduced aortic dilation (1.0±0.1 versus 1.6±0.2 mm change from baseline, DKO versus mgR/mgR, P<0.05) that did not affect rupture and survival. Conclusion Activation of IL‐6‐STAT3 signaling contributes to aneurysmal dilation in mgR/mgR mice through increased MMP‐9 activity, aggravating extracellular matrix degradation. PMID:24449804

  4. Exploration of ultra-fast electron dynamics using time-dependent R-matrix theory

    Science.gov (United States)

    van der Hart, Hugo; Rey, Hector; Hassouneh, Ola; Brown, Andrew

    2014-05-01

    When an atom is subjected to an intense laser field, the full atomic response can involve a collective response involving several electrons. This collective response will be affected by electron-electron repulsion, coupling the overall electron dynamics. In order to investigate this dynamics for a multi-electron system from first principles, we have developed time-dependent R-matrix theory. The theory applies the basic principles of R-matrix theory, in which all interactions between all electrons are taken into account close to the nucleus, but exchange interactions are neglected when one electron has become distanced from the parent atom. In this contribution, we will explain the basic principles of this theory and demonstrate its application to ultra-fast dynamics in C+, and harmonic generation in singly ionised noble-gas atoms. Both studies demonstrate that it is important to go beyond the single-active-electron approximation. This research has been supported by EPSRC UK, and by the EU Initial Training Network CORINF.

  5. On the Adjacency Matrix of RyR2 Cluster Structures.

    Science.gov (United States)

    Walker, Mark A; Kohl, Tobias; Lehnart, Stephan E; Greenstein, Joseph L; Lederer, W J; Winslow, Raimond L

    2015-11-01

    In the heart, electrical stimulation of cardiac myocytes increases the open probability of sarcolemmal voltage-sensitive Ca2+ channels and flux of Ca2+ into the cells. This increases Ca2+ binding to ligand-gated channels known as ryanodine receptors (RyR2). Their openings cause cell-wide release of Ca2+, which in turn causes muscle contraction and the generation of the mechanical force required to pump blood. In resting myocytes, RyR2s can also open spontaneously giving rise to spatially-confined Ca2+ release events known as "sparks." RyR2s are organized in a lattice to form clusters in the junctional sarcoplasmic reticulum membrane. Our recent work has shown that the spatial arrangement of RyR2s within clusters strongly influences the frequency of Ca2+ sparks. We showed that the probability of a Ca2+ spark occurring when a single RyR2 in the cluster opens spontaneously can be predicted from the precise spatial arrangements of the RyR2s. Thus, "function" follows from "structure." This probability is related to the maximum eigenvalue (λ1) of the adjacency matrix of the RyR2 cluster lattice. In this work, we develop a theoretical framework for understanding this relationship. We present a stochastic contact network model of the Ca2+ spark initiation process. We show that λ1 determines a stability threshold for the formation of Ca2+ sparks in terms of the RyR2 gating transition rates. We recapitulate these results by applying the model to realistic RyR2 cluster structures informed by super-resolution stimulated emission depletion (STED) microscopy. Eigendecomposition of the linearized mean-field contact network model reveals functional subdomains within RyR2 clusters with distinct sensitivities to Ca2+. This work provides novel perspectives on the cardiac Ca2+ release process and a general method for inferring the functional properties of transmembrane receptor clusters from their structure.

  6. On the Adjacency Matrix of RyR2 Cluster Structures.

    Directory of Open Access Journals (Sweden)

    Mark A Walker

    2015-11-01

    Full Text Available In the heart, electrical stimulation of cardiac myocytes increases the open probability of sarcolemmal voltage-sensitive Ca2+ channels and flux of Ca2+ into the cells. This increases Ca2+ binding to ligand-gated channels known as ryanodine receptors (RyR2. Their openings cause cell-wide release of Ca2+, which in turn causes muscle contraction and the generation of the mechanical force required to pump blood. In resting myocytes, RyR2s can also open spontaneously giving rise to spatially-confined Ca2+ release events known as "sparks." RyR2s are organized in a lattice to form clusters in the junctional sarcoplasmic reticulum membrane. Our recent work has shown that the spatial arrangement of RyR2s within clusters strongly influences the frequency of Ca2+ sparks. We showed that the probability of a Ca2+ spark occurring when a single RyR2 in the cluster opens spontaneously can be predicted from the precise spatial arrangements of the RyR2s. Thus, "function" follows from "structure." This probability is related to the maximum eigenvalue (λ1 of the adjacency matrix of the RyR2 cluster lattice. In this work, we develop a theoretical framework for understanding this relationship. We present a stochastic contact network model of the Ca2+ spark initiation process. We show that λ1 determines a stability threshold for the formation of Ca2+ sparks in terms of the RyR2 gating transition rates. We recapitulate these results by applying the model to realistic RyR2 cluster structures informed by super-resolution stimulated emission depletion (STED microscopy. Eigendecomposition of the linearized mean-field contact network model reveals functional subdomains within RyR2 clusters with distinct sensitivities to Ca2+. This work provides novel perspectives on the cardiac Ca2+ release process and a general method for inferring the functional properties of transmembrane receptor clusters from their structure.

  7. miR-29c induction contributes to downregulation of vascular extracellular matrix proteins by glucocorticoids.

    Science.gov (United States)

    Chuang, Tsai-Der; Pearce, William J; Khorram, Omid

    2015-07-15

    Maternal undernutrition increases maternal glucocorticoids (GCs) and alters microRNA expression in offspring. Given that the mechanisms of GC action on vascular development are not clear, this study examined the influence of GCs on microRNA 29c (miR-29c) and its predicted targets in primary rat aorta smooth muscle cells (RAOSMCs). Dexamethasone (Dex) and corticosterone (Cor) time-dependently increased miR-29c expression and reduced collagen type III (Col3A1), collagen type IV (Col4A5), elastin (ELN), and matrix metalloproteinase-2 (MMP2) protein in RAOSMCs. These effects were blocked by mifepristone. These genes were also targeted by miR-29c, as confirmed by a significant decrease in luciferase reporter activity of Col3A1 (34%), Col4A5 (45%), ELN (17%), and MMP2 (28%). In cells transfected with reporter plasmids, including the 3'-untranslated region of genes targeted by miR-29c, treatment with Dex or Cor also resulted in decreases in luciferase activity. Gain or loss of function of miR-29c significantly altered mRNA expression of Col3A1 (26% and 26%, respectively), Col4A5 (28% and 32%, respectively), and MMP2 (24% and 14%, respectively) but did not affect ELN. Gain or loss of function of miR-29c also significantly altered protein levels of Col3A1 (51% and 16%, respectively), Col4A5 (56% and 22%, respectively), ELN (53% and 71%, respectively), and MMP2 (28% and 53%, respectively). Coincubation of anti-miR-29c with Dex or Cor partially attenuated the effects of these steroids on protein expression of Col3A1 (25% and 24%, respectively), Col4A5 (26% and 44%, respectively), ELN (31% and 55%, respectively), and MMP2 (46% and 26%, respectively) in RAOSMCs compared with anti-miR negative controls. Our results demonstrate that GCs regulate the expression of Col3A1, Col4A5, ELN, and MMP2, at least in part, through induction of miR-29c.

  8. Matrix stiffness promotes cartilage endplate chondrocyte calcification in disc degeneration via miR-20a targeting ANKH expression.

    Science.gov (United States)

    Liu, Ming-Han; Sun, Chao; Yao, Yuan; Fan, Xin; Liu, Huan; Cui, You-Hong; Bian, Xiu-Wu; Huang, Bo; Zhou, Yue

    2016-05-04

    The mechanical environment is crucial for intervertebral disc degeneration (IDD). However, the mechanisms underlying the regulation of cartilage endplate (CEP) calcification by altered matrix stiffness remain unclear. In this study, we found that matrix stiffness of CEP was positively correlated with the degree of IDD, and stiff matrix, which mimicked the severe degeneration of CEP, promoted inorganic phosphate-induced calcification in CEP chondrocytes. Co-expression analysis of the miRNA and mRNA profiles showed that increasing stiffness resulted in up-regulation of miR-20a and down-regulation of decreased ankylosis protein homolog (ANKH) during inorganic phosphate-induced calcification in CEP chondrocytes. Through a dual luciferase reporter assay, we confirmed that miR-20a directly targets 3'-untranslated regions of ANKH. The inhibition of miR-20a attenuated the calcium deposition and calcification-related gene expression, whereas the overexpression of miR-20a enhanced calcification in CEP chondrocytes on stiff matrix. The rescue of ANKH expression restored the decreased pyrophosphate efflux and inhibited calcification. In clinical samples, the levels of ANKH expression were inversely associated with the degeneration degree of CEP. Thus, our findings demonstrate that the miR-20a/ANKH axis mediates the stiff matrix- promoted CEP calcification, suggesting that miR-20a and ANKH are potential targets in restraining the progression of IDD.

  9. Choice of dipole operator gauge in time-dependent R-matrix theory

    Energy Technology Data Exchange (ETDEWEB)

    Hutchinson, S; Lysaght, M A; Van der Hart, H W, E-mail: shutchinson06@qub.ac.u [Centre for Theoretical Atomic, Molecular and Optical Physics, School of Mathematics and Physics, Queen' s University Belfast, Belfast BT7 1NN (United Kingdom)

    2010-05-14

    We investigate multi-photon ionization of helium using the time-dependent R-matrix method in order to assess the best choice of gauge for the description of the laser field when the system under investigation is a multi-electron system. Ionization probabilities are obtained using the length gauge and the velocity gauge and various He basis sets, when a minimum of three or four photons need to be absorbed to achieve ionization. The probabilities are found to converge for both gauges as the number of orbitals used in the basis set increases, but they are more consistent in the length gauge. Ionization probabilities can be compared to those derived from other theoretical calculations. Agreement is within 10% when ionization requires absorption of at least three photons, but the differences increase to 20-50% when absorption of four photons is required. Analysis of the multi-photon matrix elements provides further evidence for better consistency in the length gauge than the velocity gauge when high-lying states are excluded from the calculations, which is, at present, unavoidable for a multi-electron system.

  10. The fastclime Package for Linear Programming and Large-Scale Precision Matrix Estimation in R.

    Science.gov (United States)

    Pang, Haotian; Liu, Han; Vanderbei, Robert

    2014-02-01

    We develop an R package fastclime for solving a family of regularized linear programming (LP) problems. Our package efficiently implements the parametric simplex algorithm, which provides a scalable and sophisticated tool for solving large-scale linear programs. As an illustrative example, one use of our LP solver is to implement an important sparse precision matrix estimation method called CLIME (Constrained L1 Minimization Estimator). Compared with existing packages for this problem such as clime and flare, our package has three advantages: (1) it efficiently calculates the full piecewise-linear regularization path; (2) it provides an accurate dual certificate as stopping criterion; (3) it is completely coded in C and is highly portable. This package is designed to be useful to statisticians and machine learning researchers for solving a wide range of problems.

  11. R-matrix electron-impact excitation data for astrophysically abundant sulphur ions

    CERN Document Server

    Liang, G Y; Zhao, G; Zhong, J Y; Wang, F L

    2011-01-01

    We present results for the electron-impact excitation of highly-charged sulphur ions (S8+ - S11+) obtained using the intermediate-coupling frame transformation R-matrix approach. A detailed comparison of the target structure has been made for the four ions to assess the uncertainty on collision strengths from the target structure. Effective collision strengths (\\Upsilon s) are presented at temperatures ranging from 2\\times10^2(z+1)^2 K to 2\\times10^6(z+1)^2 K (where z is the residual charge of ions. Detailed comparisons for the \\Upsilon are made with the results of previous calculations for these ions, which will pose insight on the uncertainty in their usage by astrophysical and fusion modelling codes.

  12. Rate coefficients of open shell molecules and radicals: $R$-matrix method

    Indian Academy of Sciences (India)

    JASMEET SINGH; K L BALUJA; GAGANDEEP LONGIANY

    2017-05-01

    The open shell molecules with even number of electrons have $\\pi^2$ or $\\pi^{2}_{g}$ ground-state electronic configuration. Several homonuclear diatomic molecules like $\\rm{O_2, S_2, B_2}$ have $\\pi^{2}_{g}$ ground state in the $D_{\\infty h}$ point group and heteronuclear diatomic radicals like PH, NH, SO have $\\pi^2$ ground state in the $C_{\\infty v}$ point group. We have computed and presented here the rate coefficient of these open shell molecules $\\rm{(O_2, S_2, B_2)}$ and radicals (PH, NH,SO) from the results of our previous studies using a well-established $\\it {ab-initio}$ formalism: the $R$-matrix method. The rate coefficients for elastic and electron-excited processes are studied over a wide electron temperature range.

  13. Separation of variables in anisotropic models and non-skew-symmetric elliptic r-matrix

    Science.gov (United States)

    Skrypnyk, Taras

    2017-05-01

    We solve a problem of separation of variables for the classical integrable hamiltonian systems possessing Lax matrices satisfying linear Poisson brackets with the non-skew-symmetric, non-dynamical elliptic so(3)⊗ so(3)-valued classical r-matrix. Using the corresponding Lax matrices, we present a general form of the "separating functions" B( u) and A( u) that generate the coordinates and the momenta of separation for the associated models. We consider several examples and perform the separation of variables for the classical anisotropic Euler's top, Steklov-Lyapunov model of the motion of anisotropic rigid body in the liquid, two-spin generalized Gaudin model and "spin" generalization of Steklov-Lyapunov model.

  14. Separation of variables in anisotropic models and non-skew-symmetric elliptic r-matrix

    Science.gov (United States)

    Skrypnyk, Taras

    2016-11-01

    We solve a problem of separation of variables for the classical integrable hamiltonian systems possessing Lax matrices satisfying linear Poisson brackets with the non-skew-symmetric, non-dynamical elliptic so(3)⊗ so(3) -valued classical r-matrix. Using the corresponding Lax matrices, we present a general form of the "separating functions" B(u) and A(u) that generate the coordinates and the momenta of separation for the associated models. We consider several examples and perform the separation of variables for the classical anisotropic Euler's top, Steklov-Lyapunov model of the motion of anisotropic rigid body in the liquid, two-spin generalized Gaudin model and "spin" generalization of Steklov-Lyapunov model.

  15. Classical R-matrix theory for bi-Hamiltonian field systems

    Energy Technology Data Exchange (ETDEWEB)

    Blaszak, Maciej [Department of Physics, Adam Mickiewicz University, Umultowska 85, 61-614 Poznan (Poland); Szablikowski, Blazej M [Department of Mathematics, University of Glasgow, Glasgow G12 8QW (United Kingdom)], E-mail: blaszakm@amu.edu.pl, E-mail: b.szablikowski@maths.gla.ac.uk

    2009-10-09

    This is a survey of the application of the classical R-matrix formalism to the construction of infinite-dimensional integrable Hamiltonian field systems. The main point is the study of bi-Hamiltonian structures. Appropriate constructions on Poisson, noncommutative and loop algebras as well as the central extension procedure are presented. The theory is developed for (1 + 1)- and (2 + 1)-dimensional field and lattice soliton systems as well as hydrodynamic systems. The formalism presented contains sufficiently many proofs and important details to make it self-contained and complete. The general theory is applied to several infinite-dimensional Lie algebras in order to construct both dispersionless and dispersive (soliton) integrable field systems.

  16. Atomic harmonic generation in time-dependent R-matrix theory

    Science.gov (United States)

    Brown, A. C.; Robinson, D. J.; van der Hart, H. W.

    2012-11-01

    We have developed the capability to determine accurate harmonic spectra for multielectron atoms within time-dependent R-matrix (TDRM) theory. Harmonic spectra can be calculated using the expectation value of the dipole length, velocity, or acceleration operator. We assess the calculation of the harmonic spectrum from He irradiated by 390-nm laser light with intensities up to 4×1014 W cm-2 using each form, including the influence of the multielectron basis used in the TDRM code. The spectra are consistent between the different forms, although the dipole acceleration calculation breaks down at lower harmonics. The results obtained from TDRM theory are compared with results from the helium code, finding good quantitative agreement between the methods. We find that bases which include pseudostates give the best comparison with the helium code, but models comprising only physical orbitals also produce accurate results.

  17. Atomic harmonic generation in time-dependent R-matrix theory

    CERN Document Server

    Brown, A C; van der Hart, H W

    2012-01-01

    We have developed the capability to determine accurate harmonic spectra for multielectron atoms within time-dependent R-matrix (TDRM) theory. Harmonic spectra can be calculated using the expectation value of the dipole length, velocity or acceleration operator. We assess the calculation of the harmonic spectrum from He irradiated by 390 nm laser light with intensities up to 4 x 10(14) W cm(-2) using each form, including the influence of the multielectron basis used in the TDRM code. The spectra are consistent between the different forms, although the dipole acceleration calculation breaks down at lower harmonics. The results obtained from TDRM theory are compared with results from the HELIUM code finding good quantitative agreement between the methods. We find that bases which include pseudostates give the best comparison with the HELIUM code, but models comprising only physical orbitals also produce accurate results.

  18. Time-dependent R-matrix theory applied to two-photon double ionization of He

    Science.gov (United States)

    van der Hart, H. W.

    2014-05-01

    We introduce a time-dependent R-matrix theory generalized to describe double-ionization processes. The method is used to investigate two-photon double ionization of He by intense XUV laser radiation. We combine a detailed B-spline-based wave-function description in an extended inner region with a single-electron outer region containing channels representing both single ionization and double ionization. A comparison of wave-function densities for different box sizes demonstrates that the flow between the two regions is described with excellent accuracy. The obtained two-photon double-ionization cross sections are in excellent agreement with other cross sections available. Compared to calculations fully contained within a finite inner region, the present calculations can be propagated over the time it takes the slowest electron to reach the boundary.

  19. Time-dependent R-matrix theory applied to two-photon double ionization of He

    CERN Document Server

    van der Hart, H W

    2014-01-01

    We introduce a time-dependent R-matrix theory generalised to describe double ionization processes. The method is used to investigate two-photon double ionization of He by intense XUV laser radiation. We combine a detailed B-spline-based wavefunction description in a extended inner region with a single-electron outer region containing channels representing both single ionization and double ionization. A comparison of wavefunction densities for different box sizes demonstrates that the flow between the two regions is described with excellent accuracy. The obtained two-photon double ionization cross sections are in excellent agreement with other cross sections available. Compared to calculations fully contained within a finite inner region, the present calculations can be propagated over the time it takes the slowest electron to reach the boundary.

  20. An Effective Eigenchannel R-Matrix Method for Calculating Electron-Ion Scattering Processes with Spectroscopic Precision

    Institute of Scientific and Technical Information of China (English)

    GAO Xiang; LI Jia-Ming

    2012-01-01

    The electron-ion scattering processes are very important in various scientific research fields such as astrophysical studies and inertial confinement fusion research. We report our recent development of an efficient method for providing such atomic data with spectroscopic precision.Based on the Breit-Pauli and the Dirac R-matrix theory,we develop two eigenchannel R-matrix codes,referred to as R-eigen (non-relelativistic eigenchannel R-matrix)and R-R-eigen (relativistic eigenchannel R-matrix),to directly calculate the physical quantities in multichannel quantum defect theory in the whole energy regions.From such physical quantities,we can obtain all energy levels and the related scattering cross sections with accuracies comparable with spectroscopic precision.The e+Kr+ system is used as an illustration example,the degrees of accuracies of scattering matrices are calculated within about 2%,which should be much more accurate than state-of-the-art scattering experiments.

  1. The QB method: analysing resonances using R-matrix theory. Applications to C{sup +}, He and Li

    Energy Technology Data Exchange (ETDEWEB)

    Quigley, L.; Berrington, K. [Queen`s Univ., Belfast, Northern Ireland (United Kingdom). Dept. of Applied Mathematics

    1996-10-28

    A procedure for analysing resonances in atomic and molecular collision theory is introduced, which exploits the analytic properties of R-matrix theory to obtain the energy derivative of the reactance (K) matrix, without assuming a pure Coulomb potential at large distances. The QB method defines matrices Q and B in terms of asymptotic solutions, the R-matrix and energy derivatives, such that dK/dE B{sup -1}Q, from which eigenphase gradients of the K-matrix can be obtained. resonance positions are defined at the points of maximum gradient; resonance widths are related to the inverse of the eigenphase gradients. Resonance properties such as identifications are discussed. (author).

  2. Optimising parallel R correlation matrix calculations on gene expression data using MapReduce.

    Science.gov (United States)

    Wang, Shicai; Pandis, Ioannis; Johnson, David; Emam, Ibrahim; Guitton, Florian; Oehmichen, Axel; Guo, Yike

    2014-11-05

    High-throughput molecular profiling data has been used to improve clinical decision making by stratifying subjects based on their molecular profiles. Unsupervised clustering algorithms can be used for stratification purposes. However, the current speed of the clustering algorithms cannot meet the requirement of large-scale molecular data due to poor performance of the correlation matrix calculation. With high-throughput sequencing technologies promising to produce even larger datasets per subject, we expect the performance of the state-of-the-art statistical algorithms to be further impacted unless efforts towards optimisation are carried out. MapReduce is a widely used high performance parallel framework that can solve the problem. In this paper, we evaluate the current parallel modes for correlation calculation methods and introduce an efficient data distribution and parallel calculation algorithm based on MapReduce to optimise the correlation calculation. We studied the performance of our algorithm using two gene expression benchmarks. In the micro-benchmark, our implementation using MapReduce, based on the R package RHIPE, demonstrates a 3.26-5.83 fold increase compared to the default Snowfall and 1.56-1.64 fold increase compared to the basic RHIPE in the Euclidean, Pearson and Spearman correlations. Though vanilla R and the optimised Snowfall outperforms our optimised RHIPE in the micro-benchmark, they do not scale well with the macro-benchmark. In the macro-benchmark the optimised RHIPE performs 2.03-16.56 times faster than vanilla R. Benefiting from the 3.30-5.13 times faster data preparation, the optimised RHIPE performs 1.22-1.71 times faster than the optimised Snowfall. Both the optimised RHIPE and the optimised Snowfall successfully performs the Kendall correlation with TCGA dataset within 7 hours. Both of them conduct more than 30 times faster than the estimated vanilla R. The performance evaluation found that the new MapReduce algorithm and its

  3. Classical integrable systems and soliton equations related to eleven-vertex R-matrix

    Directory of Open Access Journals (Sweden)

    A. Levin

    2014-10-01

    Full Text Available In our recent paper we suggested a natural construction of the classical relativistic integrable tops in terms of the quantum R-matrices. Here we study the simplest case – the 11-vertex R-matrix and related gl2 rational models. The corresponding top is equivalent to the 2-body Ruijsenaars–Schneider (RS or the 2-body Calogero–Moser (CM model depending on its description. We give different descriptions of the integrable tops and use them as building blocks for construction of more complicated integrable systems such as Gaudin models and classical spin chains (periodic and with boundaries. The known relation between the top and CM (or RS models allows to rewrite the Gaudin models (or the spin chains in the canonical variables. Then they assume the form of n-particle integrable systems with 2n constants. We also describe the generalization of the top to 1+1 field theories. It allows us to get the Landau–Lifshitz type equation. The latter can be treated as non-trivial deformation of the classical continuous Heisenberg model. In a similar way the deformation of the principal chiral model is described.

  4. Classical integrable systems and soliton equations related to eleven-vertex R-matrix

    Energy Technology Data Exchange (ETDEWEB)

    Levin, A., E-mail: alevin@hse.ru [NRU HSE, Department of Mathematics, Myasnitskaya str. 20, Moscow, 101000 (Russian Federation); ITEP, B. Cheremushkinskaya str. 25, Moscow, 117218 (Russian Federation); Olshanetsky, M., E-mail: olshanet@itep.ru [ITEP, B. Cheremushkinskaya str. 25, Moscow, 117218 (Russian Federation); MIPT, Institutskii per. 9, Dolgoprudny, Moscow Region, 141700 (Russian Federation); Zotov, A., E-mail: zotov@mi.ras.ru [Steklov Mathematical Institute RAS, Gubkina str. 8, Moscow, 119991 (Russian Federation); ITEP, B. Cheremushkinskaya str. 25, Moscow, 117218 (Russian Federation); MIPT, Institutskii per. 9, Dolgoprudny, Moscow Region, 141700 (Russian Federation)

    2014-10-15

    In our recent paper we suggested a natural construction of the classical relativistic integrable tops in terms of the quantum R-matrices. Here we study the simplest case – the 11-vertex R-matrix and related gl{sub 2} rational models. The corresponding top is equivalent to the 2-body Ruijsenaars–Schneider (RS) or the 2-body Calogero–Moser (CM) model depending on its description. We give different descriptions of the integrable tops and use them as building blocks for construction of more complicated integrable systems such as Gaudin models and classical spin chains (periodic and with boundaries). The known relation between the top and CM (or RS) models allows to rewrite the Gaudin models (or the spin chains) in the canonical variables. Then they assume the form of n-particle integrable systems with 2n constants. We also describe the generalization of the top to 1+1 field theories. It allows us to get the Landau–Lifshitz type equation. The latter can be treated as non-trivial deformation of the classical continuous Heisenberg model. In a similar way the deformation of the principal chiral model is described.

  5. Classical integrable systems and soliton equations related to eleven-vertex R-matrix

    Science.gov (United States)

    Levin, A.; Olshanetsky, M.; Zotov, A.

    2014-10-01

    In our recent paper we suggested a natural construction of the classical relativistic integrable tops in terms of the quantum R-matrices. Here we study the simplest case - the 11-vertex R-matrix and related gl2 rational models. The corresponding top is equivalent to the 2-body Ruijsenaars-Schneider (RS) or the 2-body Calogero-Moser (CM) model depending on its description. We give different descriptions of the integrable tops and use them as building blocks for construction of more complicated integrable systems such as Gaudin models and classical spin chains (periodic and with boundaries). The known relation between the top and CM (or RS) models allows to rewrite the Gaudin models (or the spin chains) in the canonical variables. Then they assume the form of n-particle integrable systems with 2n constants. We also describe the generalization of the top to 1+1 field theories. It allows us to get the Landau-Lifshitz type equation. The latter can be treated as non-trivial deformation of the classical continuous Heisenberg model. In a similar way the deformation of the principal chiral model is described.

  6. Classical integrable systems and soliton equations related to eleven-vertex R-matrix

    CERN Document Server

    Levin, A; Zotov, A

    2014-01-01

    In our recent paper we suggested a natural construction of the classical relativistic integrable tops in terms of the quantum $R$-matrices. Here we study the simplest case -- the 11-vertex $R$-matrix and related ${\\rm gl}_2$ rational models. The corresponding top is equivalent to the 2-body Ruijsenaars-Schneider (RS) or the 2-body Calogero-Moser (CM) model depending on its description. We give different descriptions of the integrable tops and use them as building blocks for construction of more complicated integrable systems such as Gaudin models and classical spin chains (periodic and with boundaries). The known relation between the top and CM (or RS) models allows to re-write the Gaudin models (or the spin chains) in the canonical variables. Then they assume the form of $n$-particle integrable systems with $2n$ constants. We also describe the generalization of the top to 1+1 field theories. It allows us to get the Landau-Lifshitz type equation. The latter can be treated as non-trivial deformation of the cla...

  7. R-Matrix incorporating Time (RMT) method for H2+ in short and intense laser fields

    CERN Document Server

    Broin, Cathal Ó

    2015-01-01

    In this work we develop an approach for a molecular hydrogen ion (H2+) in the Born-Oppenheimer approximation while exposed to intense short-pulse radiation. Our starting point is the R-Matrix incorporating Time (RMT) formulation for atomic hydrogen [L. A. A. Nikolopoulos et al, Phys. Rev. A 78, 063420 (2008)] which has proven to be successful at treating multi-electron atomic systems efficiently and to high accuracy [L. R. Moore et al J. Mod. Opt. 58,1132, (2011)]. The present study on H2+ has been performed with a similar objective of developing an ab initio method for solving the Time-dependent Schr\\"odinger Equation (TDSE) for multi-electron diatomic molecules exposed to an external time-dependent potential field. The theoretical formulation is developed in detail for the molecular hydrogen ion where all the multi-electron and inter-nuclei complications are absent. As in the atomic case, the configuration space of the electron's coordinates are separated artificially over two regions; the inner (I) and out...

  8. R-matrix with Pseudo-States Calculations for Electron Impact Excitation of Helium.

    Science.gov (United States)

    Bartschat, Klaus

    1998-05-01

    We have extended our previous R-matrix with pseudo-states work on electron impact excitation of the n=2 states of helium [1] to include transitions to the physical n=3 states. The predictions for total cross sections from both the ground state and the metastable (1s2s)^1,3S states agree very well with the convergent-close-coupling results of Fursa and Bray [2], while some disagreement remains with the recent experimental data of Lagus et al. [3]. However, excellent agreement between theory and experiment [2,4] is obtained for various electron impact coherence parameters, particularly for excitation of the 3^1,3D states. 1. K. Bartschat, E.T. Hudson, M.P. Scott, P.G. Burke, and V.M. Burke, 1. Phys. Rev. A 54 (1996), R998-1001; J. Phys. B29 (1996), 2875 & 5513 2. D.V. Fursa and I. Bray, J. Phys. B 30 (1997), 757-785 3. M.E. Lagus, J.B. Boffard, L.W. Anderson, and C.C. Lin, Phys. Rev. 3. A 53 (1996), 1505-18 4. A. Crowe (1997), private communication

  9. A new matrix method for the Casimir operators of the Lie algebras wsp(N,R) and Isp(2N,R)

    Energy Technology Data Exchange (ETDEWEB)

    Campoamor-Stursberg, Rutwig [Dpto. Geometria y Topologia, Fac. CC. Matematicas, Universidad Complutense de Madrid, Ciudad Universitaria s/n, E-28040 Madrid (Spain)

    2005-05-13

    A method is given to determine the Casimir operators of the perfect Lie algebras wsp(N,R) = sp(2N,R) +-vector {sub {gamma}}{sub {omega}{sub 1}}{sub +{gamma}{sub 0}} h{sub N} and the inhomogeneous Lie algebras Isp(2N,R) in terms of polynomials associated with a parametrized (2N + 1) x (2N + 1)-matrix. For the inhomogeneous symplectic algebras this matrix is shown to be associated to a faithful representation. We further analyse the invariants for the extended Schroedinger algebra S-circumflex(N) in (N + 1) dimensions, which arises naturally as a subalgebra of wsp(N,R). The method is extended to other classes of Lie algebras, and some applications to the missing label problem are given.

  10. Using R-matrix ideas to describe one-nucleon transfers to resonance states

    Science.gov (United States)

    Escher, J. E.; Thompson, I. J.; Arbanas, G.; Elster, Ch.; Eremenko, V.; Hlophe, L.; Nunes, F.; Torus Collaboration

    2014-09-01

    (d,p) transfer reactions have long been used to investigate nuclear structure. Carried out in inverse kinematics, they are expected to play a central role in the study of weakly-bound systems at modern RIB facilities. While the theoretical framework and its computational implementation for describing (d,p) reactions have seen much progress, open questions remain. Resonances in the low-energy spectra of weakly-bound nuclei, e.g., are of interest for astrophysical applications and can in principle be studied with transfer reactions. Applying standard transfer reaction theories is problematic, both practically in terms of achieving converged solutions and conceptually in terms of interpreting the results. Recently, a new formalism that utilizes concepts known from the successful and popular R-matrix theory was proposed for the description of (d,p) reactions [Mukhamedzhanov, PRC 2011]. The formalism covers transfers to bound and resonance states and is general enough to include deuteron breakup. We present tests of the proposed formalism, compare calculations to measured cross sections, and discuss implications [Escher et al. PRC 2014]. (d,p) transfer reactions have long been used to investigate nuclear structure. Carried out in inverse kinematics, they are expected to play a central role in the study of weakly-bound systems at modern RIB facilities. While the theoretical framework and its computational implementation for describing (d,p) reactions have seen much progress, open questions remain. Resonances in the low-energy spectra of weakly-bound nuclei, e.g., are of interest for astrophysical applications and can in principle be studied with transfer reactions. Applying standard transfer reaction theories is problematic, both practically in terms of achieving converged solutions and conceptually in terms of interpreting the results. Recently, a new formalism that utilizes concepts known from the successful and popular R-matrix theory was proposed for the description

  11. Valence and L-shell photoionization of Cl-like Argon using R-matrix techniques

    CERN Document Server

    Tyndall, Niall; Ballance, Connor; Hibbert, Alan

    2015-01-01

    Photoionization cross sections are obtained using the relativistic Dirac Atomic R-matrix Codes (DARC) for all valence and L-shell energy ranges between 27-270eV. A total of 557 levels arising from the dominant configurations 3s$^2$3p$^4$, 3s3p$^5$, 3p$^6$, 3s$^2$3p$^3$[3d, 4s, 4p], 3p$^5$3d, 3s$^2$3p$^2$3d$^2$, 3s3p$^4$3d, 3s3p$^3$3d$^2$ and 2s$^2$2p$^5$3s$^2$3p$^5$ have been included in the target wavefunction representation of the Ar III ion, including up to 4p in the orbital basis. We also performed a smaller Breit-Pauli (BP) calculation containing the lowest 124 levels. Direct comparisons are made with previous theoretical and experimental work for both valence shell and L-shell photoionization. Excellent agreement was found for transitions involving the $^2$P$^{\\rm o}$ initial state to all allowed final states for both calculations across a range of photon energies. A number of resonant states have been identified to help analyze and explain the nature of the spectra at photon energies between 250 and 27...

  12. Dirac R-matrix calculations of photoionization cross-sections of Ca IV

    Science.gov (United States)

    Nazir, R. T.; Bari, M. A.; Sardar, S.; Bilal, M.; Salahuddin, M.; Nasim, M. H.

    2016-11-01

    In this paper total photoionization cross-sections in the ground (^2P^o_{3/2}) and two meta-stable states (^2P^o_{1/2},^2S_{1/2}) of Ca IV are reported using the relativistic Dirac Atomic R-matrix Codes (DARC) in the photon energy range 67-122 eV. The target wavefunctions are constructed with fully relativistic atomic structure GRASP package. A total of lowest lying 48 fine-structure levels arising from the four main configuration (3s23p4, 3s3p5 3s23p33d, 3p6) are considered for the target wavefunctions expansion. Our calculated eigenvalues of the core ion Ca V show reasonable agreement with available experimental and theoretical results. It is found that present ionization threshold energies of first three levels of Ca IV are in excellent agreement with NIST energies and experimental measurements. The photoionization cross-sections of Ca IV are calculated with an appropriate energy step (0.1 × 10-3 eV) to describe the resonance structures in vivid details. A comparison for the statistically weighted mixture of states (^2P^o_{3/2},^2P^o_{1/2}) with other experimental measurements including term-resolved ground state theoretical calculations is presented. Our computed photoionization cross-sections agree better with the measured cross-sections than the other theoretical approaches and are potentially more accurate.

  13. Low energy R-matrix fits for the 6Li(d,a)4He S factor

    CERN Document Server

    Grineviciute, J; Lamia, L; Spitaleri, C; La Cognata, M

    2014-01-01

    Background: The information about the 6Li(d,a)4He reaction rates of the astrophysical interest can be obtained by extrapolating direct data to the lower energies, or by indirect methods. The indirect Trojan Horse method, as well as various R-matrix and polynomial fits to direct data, estimate the electron screening energies much larger than the adiabatic limit. Calculations that include the subthreshold resonance estimate smaller screening energies. Purpose: Obtain the 6Li(d,a)4He reaction R-matrix parameters and the astrophysical S factor for the energies relevant to the stellar plasmas by fitting the R-matrix formulas for the subthreshold resonances to the S factor data above 60 keV. Methods: The bare S factor is calculated using the single and the two-level R-matrix formulas for the closest to the threshold 0+ and 2+ subthreshold states at 22.2, 20.2 and 20.1 MeV. The electron screening potential Ue is then obtained by fitting it as a single parameter to the low energy data. Results: The low energy S facto...

  14. R-Matrix Evaluation of {sup 16}O neutron cross sections up to 6.3 MeV

    Energy Technology Data Exchange (ETDEWEB)

    Sayer, R.O.; Leal, L.C.; Larson, N.M.; Spencer, R.R.; and Wright, R.Q.

    2000-08-01

    In this paper the authors describe an evaluation of {sup 16}O neutron cross sections in the resolved resonance region with the multilevel Reich-Moore R-matrix formalism. Resonance analyses were performed with the computer code SAMMY [LA98] which utilizes Bayes' method, a generalized least squares technique.

  15. miR-132 Regulates Dendritic Spine Structure by Direct Targeting of Matrix Metalloproteinase 9 mRNA.

    Science.gov (United States)

    Jasińska, Magdalena; Miłek, Jacek; Cymerman, Iwona A; Łęski, Szymon; Kaczmarek, Leszek; Dziembowska, Magdalena

    2016-09-01

    Mir-132 is a neuronal activity-regulated microRNA that controls the morphology of dendritic spines and neuronal transmission. Similar activities have recently been attributed to matrix metalloproteinase-9 (MMP-9), an extrasynaptic protease. In the present study, we provide evidence that miR-132 directly regulates MMP-9 mRNA in neurons to modulate synaptic plasticity. With the use of luciferase reporter system, we show that miR-132 binds to the 3'UTR of MMP-9 mRNA to regulate its expression in neurons. The overexpression of miR-132 in neurons reduces the level of endogenous MMP-9 protein secretion. In synaptoneurosomes, metabotropic glutamate receptor (mGluR)-induced signaling stimulates the dissociation of miR-132 from polyribosomal fractions and shifts it towards the messenger ribonucleoprotein (mRNP)-containing fraction. Furthermore, we demonstrate that the overexpression of miR-132 in the cultured hippocampal neurons from Fmr1 KO mice that have increased synaptic MMP-9 level provokes enlargement of the dendritic spine heads, a process previously implicated in enhanced synaptic plasticity. We propose that activity-dependent miR-132 regulates structural plasticity of dendritic spines through matrix metalloproteinase 9.

  16. Algebro-geometric approach for a centrally extended Uq[sl(2|2)] R-matrix

    Science.gov (United States)

    Martins, M. J.

    2017-04-01

    In this paper we investigate the algebraic geometric nature of a solution of the Yang-Baxter equation based on the quantum deformation of the centrally extended sl (2 | 2) superalgebra proposed by Beisert and Koroteev [1]. We derive an alternative representation for the R-matrix in which the matrix elements are given in terms of rational functions depending on weights sited on a degree six surface. For generic gauge the weights geometry are governed by a genus one ruled surface while for a symmetric gauge choice the weights lie instead on a genus five curve. We have written down the polynomial identities satisfied by the R-matrix entries needed to uncover the corresponding geometric properties. For arbitrary gauge the R-matrix geometry is argued to be birational to the direct product CP1 ×CP1 × A where A is an Abelian surface. For the symmetric gauge we present evidences that the geometric content is that of a surface of general type lying on the so-called Severi line with irregularity two and geometric genus nine. We discuss potential geometric degenerations when the two free couplings are restricted to certain one-dimensional subspaces.

  17. Photoionization cross sections of O II, O III, O IV, and O V: benchmarking R-matrix theory and experiments

    CERN Document Server

    Nahar, S N

    2003-01-01

    For crucial tests between theory and experiment, ab initio close coupling calculations are carried out for photoionization of O II, O III, O IV, O V. The relativistic fine structure and resonance effects are studied using the R-matrix and its relativistic variant the Breit Pauli R-matrix (BPRM) approximation. Detailed comparison is made with high resolution experimental measurements carried out in three different set-ups: Advanced Light Source at Berkeley, and synchrotron radiation experiments at University of Aarhus and University of Paris-Sud. The comparisons illustrate physical effects in photoionization such as (i) fine structure, (ii) resolution, and (iii) metastable components. Photoionization cross sections sigma{PI} of the ground and a few low lying excited states of these ions obtained in the experimental spectrum include combined features of these states. Theoretically calculated resonances need to be resolved with extremely fine energy mesh for precise comparison. In addition, prominent resonant fe...

  18. Transparent boundary conditions for time-dependent electron transport in the R-matrix method with applications to nanostructured interfaces

    Science.gov (United States)

    Nemnes, G. A.; Palici, Alexandra; Manolescu, A.

    2016-11-01

    Transparent boundary conditions for the time-dependent Schrödinger equation are implemented using the R-matrix method. The employed scattering formalism is suitable for describing open quantum systems and provides the framework for the time-dependent coherent transport. Transmission and reflection of wave functions at the edges of a finite quantum system are essential for an accurate and efficient description of the time-dependent processes on large time scales. We detail the computational method and point out the numerical advantages stemming from the open system approach based on the R-matrix formalism. The approach is used here to describe time-dependent transport across nanostructured interfaces relevant for photovoltaic applications.

  19. R-matrix calculations for electron-impact excitation of C(+), N(2+), and O(3+) including fine structure

    Science.gov (United States)

    Luo, D.; Pradhan, A. K.

    1990-01-01

    The new R-matrix package for comprehensive close-coupling calculations for electron scattering with the first three ions in the boron isoelectronic sequence, the astrophysically significant C(+), N(2+), and O(3+), is presented. The collision strengths are calculated in the LS coupling approximation, as well as in pair-coupling scheme, for the transitions among the fine-structure sublevels. Calculations are carried out at a large number of energies in order to study the detailed effects of autoionizing resonances.

  20. Dirac $R$-matrix and Breit-Pauli distorted wave calculations of the electron-impact excitation of W$^{44+}$

    CERN Document Server

    Bluteau, M M; Badnell, N R

    2015-01-01

    With construction of ITER progressing and existing tokamaks carrying out ITER-relevant experiments, accurate fundamental and derived atomic data for numerous ionization stages of tungsten (W) is required to assess the potential effect of this species upon fusion plasmas. The results of fully relativistic, partially radiation damped, Dirac $R$-matrix electron-impact excitation calculations for the W$^{44+}$ ion are presented. These calculations use a configuration interaction and close-coupling expansion that opens-up the 3d-subshell, which does not appear to have been considered before in a collision calculation. As a result, it is possible to investigate the arrays, [3d$^{10}$4s$^2-$3d$^9$4s$^2$4f] and [3d$^{10}$4s$^2-$3d$^9$4s4p4d], which are predicted to contain transitions of diagnostic importance for the soft x-ray region. Our $R$-matrix collision data are compared with previous $R$-matrix results by Ballance and Griffin as well as our own relativistically corrected, Breit-Pauli distorted wave and plane-...

  1. R-matrix calculations of triplet gerade states of molecular hydrogen and their use for high-resolution spectroscopy

    Science.gov (United States)

    Oueslati, H.; Argoubi, F.; Bezzaouia, S.; Telmini, M.; Jungen, Ch.

    2014-03-01

    A variational R-matrix approach combined with multichannel quantum defect theory is used for a computational study of triplet gerade states of H2. Electron-ion reaction (quantum defect) matrices are calculated as functions of internuclear distance and energy for the bound and continuum ranges including singly and doubly excited configurations built on the 1σg (X+2Σg+) and 1σu (A+2Σu+) core states of the H2+ ion. It is shown how these matrices can be reduced to effective quantum defect functions adapted to the analysis of high-resolution spectra in the bound range. These R-matrix effective quantum defects are finally adjusted to the available experimental data [Sprecher et al., J. Phys. Chem. A 117, 9462 (2013), 10.1021/jp311793t], producing agreement with experiment to within 0.5 cm-1, nearly as good as obtained by Sprecher et al. In addition, the R-matrix calculations predict the evolution of the quantum defects for higher energies, in a range extending far into the electronic continuum.

  2. THE GENERALIZED QUATERNION MATRIX EQUATION AX DXB = R%广义四元数矩阵方程AX-DXB=R

    Institute of Scientific and Technical Information of China (English)

    李样明

    2002-01-01

    设HF为域F上的广义四元数除环,ChF≠2.本文利用拟线性变换T(X)=AX-DXB讨论HF上矩阵方程AX-DXB=R的求解问题,获得了上方程存在(唯一)解的几个充分必要条件,并给出了解的显式公式.%Let HF be the generalized quaternion division algebra over a field F with Char F≠ 2. In this paper, the matrix equation AX-DXB = R over Hf is considered. By using thequasilinear transformation T (X)= AX- DXB, this paper obtains several necessary andsufficient conditions for the existence of a solution or a unique solution to the matrix equation,and gives some explicit formulas of solutions.

  3. Rydberg and continuum states of the HeH+ molecular ion: Variational R -matrix and multichannel quantum defect theory calculations

    Science.gov (United States)

    Bouhali, I.; Bezzaouia, S.; Telmini, M.; Jungen, Ch.

    2016-08-01

    Variational ab initio R -matrix theory combined with generalized multichannel quantum defect theory is used to calculate singly excited Rydberg states of the hydrohelium molecular ion, HeH+, for Σ,3+1,Π,31,Δ,31,Φ,31, and Γ,31 symmetry. Bound levels are calculated for n values up to n ≈10 , and continuum states up to ≈3 eV above the HeH2 + threshold. The calculations span the range of internuclear distances R from 1 to 5 bohrs. The present work follows a preliminary study on the Δ,31 states of HeH+ [Bouhali, Bezzaouia, Telmini, and Jungen, EPJ Web Conf. 84, 04004 (2015), 10.1051/epjconf/20158404004] which was also based on R -matrix theory. Further—although limited to rather small R values—the present work extends the recent ab initio computations of Jungen and Jungen [Mol. Phys. 113, 2333 (2015), 10.1080/00268976.2015.1040094] to higher excitation energies which are not accessible to standard quantum-chemical methods. Where a comparison with the calculations of Jungen and Jungen and other older results can be made, namely for n ≤5 , very good agreement with previous ab initio results is obtained.

  4. The tensor hypercontracted parametric reduced density matrix algorithm: coupled-cluster accuracy with O(r^4) scaling

    CERN Document Server

    Shenvi, Neil; Yang, Yang; Yang, Weitao; Schwerdtfeger, Christine; Mazziotti, David

    2013-01-01

    Tensor hypercontraction is a method that allows the representation of a high-rank tensor as a product of lower-rank tensors. In this paper, we show how tensor hypercontraction can be applied to both the electron repulsion integral (ERI) tensor and the two-particle excitation amplitudes used in the parametric reduced density matrix (pRDM) algorithm. Because only O(r) auxiliary functions are needed in both of these approximations, our overall algorithm can be shown to scale as O(r4), where r is the number of single-particle basis functions. We apply our algorithm to several small molecules, hydrogen chains, and alkanes to demonstrate its low formal scaling and practical utility. Provided we use enough auxiliary functions, we obtain accuracy similar to that of the traditional pRDM algorithm, somewhere between that of CCSD and CCSD(T).

  5. The tensor hypercontracted parametric reduced density matrix algorithm: coupled-cluster accuracy with O(r(4)) scaling.

    Science.gov (United States)

    Shenvi, Neil; van Aggelen, Helen; Yang, Yang; Yang, Weitao; Schwerdtfeger, Christine; Mazziotti, David

    2013-08-07

    Tensor hypercontraction is a method that allows the representation of a high-rank tensor as a product of lower-rank tensors. In this paper, we show how tensor hypercontraction can be applied to both the electron repulsion integral tensor and the two-particle excitation amplitudes used in the parametric 2-electron reduced density matrix (p2RDM) algorithm. Because only O(r) auxiliary functions are needed in both of these approximations, our overall algorithm can be shown to scale as O(r(4)), where r is the number of single-particle basis functions. We apply our algorithm to several small molecules, hydrogen chains, and alkanes to demonstrate its low formal scaling and practical utility. Provided we use enough auxiliary functions, we obtain accuracy similar to that of the standard p2RDM algorithm, somewhere between that of CCSD and CCSD(T).

  6. The Involvement of miR-29b-3p in Arterial Calcification by Targeting Matrix Metalloproteinase-2

    Science.gov (United States)

    Jiang, Wenhong; Zhang, Zhanman; Yang, Han; Lin, Qiuning; Han, Chuangye

    2017-01-01

    Vascular calcification is a risk predictor and common pathological change in cardiovascular diseases that are associated with elastin degradation and phenotypic transformation of vascular smooth muscle cells via gelatinase matrix metalloproteinase-2 (MMP2). However, the mechanisms involved in this process remain unclear. In this study, we investigated the relationships between miR-29b-3p and MMP2, to confirm miR-29b-3p-mediated MMP2 expression at the posttranscriptional level in arterial calcification. In male Sprague Dawley rats, arterial calcification was induced by subcutaneous injection of a toxic dose of cholecalciferol. In vivo, the quantitative real-time polymerase chain reaction (qRT-PCR) showed that MMP2 expression was upregulated in calcified arterial tissues, and miR-29b-3p expression was downregulated. There was a negative correlation between MMP2 mRNA expression and miR-29b-3p levels (P = 0.0014, R2 = 0.481). Western blotting showed that MMP2 expression was significantly increased in rats treated with cholecalciferol. In vitro, overexpression of miR-29b-3p led to decreased MMP2 expression in rat vascular smooth muscle cells, while downregulation of miR-29b-3p expression led to increased MMP2 expression. Moreover, the luciferase reporter assay confirmed that MMP2 is the direct target of miR-29b-3p. Together, our results demonstrated that a role of miR-29b-3p in vascular calcification involves targeting MMP2. PMID:28164126

  7. The Involvement of miR-29b-3p in Arterial Calcification by Targeting Matrix Metalloproteinase-2

    Directory of Open Access Journals (Sweden)

    Wenhong Jiang

    2017-01-01

    Full Text Available Vascular calcification is a risk predictor and common pathological change in cardiovascular diseases that are associated with elastin degradation and phenotypic transformation of vascular smooth muscle cells via gelatinase matrix metalloproteinase-2 (MMP2. However, the mechanisms involved in this process remain unclear. In this study, we investigated the relationships between miR-29b-3p and MMP2, to confirm miR-29b-3p-mediated MMP2 expression at the posttranscriptional level in arterial calcification. In male Sprague Dawley rats, arterial calcification was induced by subcutaneous injection of a toxic dose of cholecalciferol. In vivo, the quantitative real-time polymerase chain reaction (qRT-PCR showed that MMP2 expression was upregulated in calcified arterial tissues, and miR-29b-3p expression was downregulated. There was a negative correlation between MMP2 mRNA expression and miR-29b-3p levels (P=0.0014, R2=0.481. Western blotting showed that MMP2 expression was significantly increased in rats treated with cholecalciferol. In vitro, overexpression of miR-29b-3p led to decreased MMP2 expression in rat vascular smooth muscle cells, while downregulation of miR-29b-3p expression led to increased MMP2 expression. Moreover, the luciferase reporter assay confirmed that MMP2 is the direct target of miR-29b-3p. Together, our results demonstrated that a role of miR-29b-3p in vascular calcification involves targeting MMP2.

  8. Risk Measures and Contagion Matrix: an Application of CoVaR for the Brazilian Financial Market

    Directory of Open Access Journals (Sweden)

    Aléssio Tony Cavalcanti de Almeida

    2012-12-01

    Full Text Available The main point of this work is to assess how a financial distress in return series of the major Brazilian companies assets and relevant domestic market (Ibovespa and main international index (Dow Jones interact with each other, in an attempt to capture spillover effects. We try to capture the systemic risk, the contagion effect and the stress test. This paper uses the methodology CoVaR, described in the Adrian and Brunnermeier (2011 which use quantile regression. The main innovation of this work is the construction and estimation of the contagion matrix to domestic capital market. The results show that there is no relationship between risk measurements given by Value at Risk (VaR and CoVaR, moreover the systemic risk shows those assets that generate more negative externalities for the domestic financial market. The stress test indicates that a distress in domestic market indicator returns have more spillover effects on domestic papers than a distress in the international market returns. Finally, the contagion matrix reveals that the interrelationships of contagion between the firms’ returns are relevant sectorial evidence for assessment and management of risks.

  9. Subthreshold resonances and resonances in the R -matrix method for binary reactions and in the Trojan horse method

    Science.gov (United States)

    Mukhamedzhanov, A. M.; Shubhchintak, Bertulani, C. A.

    2017-08-01

    In this paper we discuss the R -matrix approach to treat the subthreshold resonances for the single-level and one-channel and for the single-level and two-channel cases. In particular, the expression relating the asymptotic normalization coefficient (ANC) with the observable reduced width, when the subthreshold bound state is the only channel or coupled with an open channel, which is a resonance, is formulated. Since the ANC plays a very important role in nuclear astrophysics, these relations significantly enhance the power of the derived equations. We present the relationship between the resonance width and the ANC for the general case and consider two limiting cases: wide and narrow resonances. Different equations for the astrophysical S factors in the R -matrix approach are presented. After that we discuss the Trojan horse method (THM) formalism. The developed equations are obtained using the surface-integral formalism and the generalized R -matrix approach for the three-body resonant reactions. It is shown how the Trojan horse (TH) double-differential cross section can be expressed in terms of the on-the-energy-shell astrophysical S factor for the binary subreaction. Finally, we demonstrate how the THM can be used to calculate the astrophysical S factor for the neutron generator 13C(α ,n )16O in low-mass AGB stars. At astrophysically relevant energies this astrophysical S factor is controlled by the threshold level 1 /2+,Ex=6356 keV. Here, we reanalyzed recent TH data taking into account more accurately the three-body effects and using both assumptions that the threshold level is a subthreshold bound state or it is a resonance state.

  10. R-Matrix Evaluation of Cl Neutron Cross Sections up to 1.2 MeV

    Energy Technology Data Exchange (ETDEWEB)

    Sayer, R.O.

    2003-03-27

    We have performed an evaluation of {sup 35}Cl, {sup 37}Cl, and {sup nat}Cl neutron cross sections in the resolved resonance region with the multilevel Reich-Moore R-matrix formalism. Resonance analyses were carried out with the computer code SAMMY, which utilizes Bayes' method, a generalized least squares technique. A recent modification of SAMMY enabled us to calculate charged particle penetrabilities for the proton exit channel. Our resonance parameter representation describes the data much better than does ENDF/B-VI, and it should lead to improved criticality safety calculations for systems where Cl is present.

  11. The FEM-R-Matrix Approach: Use of Mixed Finite Element and Gaussian Basis Sets for Electron Molecule Collisions

    Science.gov (United States)

    Thuemmel, Helmar T.; Huo, Winifred M.; Langhoff, Stephen R. (Technical Monitor)

    1995-01-01

    For the calculation of electron molecule collision cross sections R-matrix methods automatically take advantage of the division of configuration space into an inner region (I) bounded by radius tau b, where the scattered electron is within the molecular charge cloud and the system is described by an correlated Configuration Interaction (CI) treatment in close analogy to bound state calculations, and an outer region (II) where the scattered electron moves in the long-range multipole potential of the target and efficient analytic methods can be used for solving the asymptotic Schroedinger equation plus boundary conditions.

  12. Dirac R-matrix calculations of photoionization cross sections of Ni XII and atomic structure data of Ni XIII

    Science.gov (United States)

    Nazir, R. T.; Bari, M. A.; Bilal, M.; Sardar, S.; Nasim, M. H.; Salahuddin, M.

    2017-02-01

    We performed R-matrix calculations for photoionization cross sections of the two ground state configuration 3s23p5 (^2P^o3/2,1/2) levels and 12 excited states of Ni XII using relativistic Dirac Atomic R-matrix Codes (DARC) across the photon energy range between the ionizations thresholds of the corresponding states and well above the thresholds of the last level of the Ni XIII target ion. Generally, a good agreement is obtained between our results and the earlier theoretical photoionization cross sections. Moreover, we have used two independent fully relativistic GRASP and FAC codes to calculate fine-structure energy levels, wavelengths, oscillator strengths, transitions rates among the lowest 48 levels belonging to the configuration (3s23p4, 3s3p5, 3p6, 3s23p33d) in Ni XIII. Additionally, radiative lifetimes of all the excited states of Ni XIII are presented. Our results of the atomic structure of Ni XIII show good agreement with other theoretical and experimental results available in the literature. A good agreement is found between our calculated lifetimes and the experimental ones. Our present results are useful for plasma diagnostic of fusion and astrophysical plasmas.

  13. Astrophysical S factor of {$^{12}$C($\\alpha,\\gamma$)$^{16}$O} Calculated with the Reduced R-matrix Theory

    CERN Document Server

    An, Zhen-Dong; Ma, Yu-Gang; Yu, Jian-Kai; Sun, Ye-Ying; Fan, Gong-Tao; Li, Yong-Jiang; Xu, Hang-Hua; Huang, Bo-Song; Wang, Kan

    2015-01-01

    Determination of the accurate astrophysical S factor of {$^{12}$C($\\alpha,\\gamma$)$^{16}$O} reaction has been regarded as a holy grail of nuclear astrophysics for decades. In current stellar models, a knowledge of that value to better than 10\\% is desirable. Due to the practical issues, tremendous experimental and theoretical efforts over nearly 50 years are not able to reach this goal, and the published values contradicted with each other strongly and their uncertainties are 2 times larger than the required precision. To this end we have developed a Reduced R-matrix Theory, based on the classical R-matrix theory of Lane and Thomas, which treats primary transitions to ground state and four bound states as the independent reaction channels in the channel spin representation. With the coordination of covariance statistics and error propagation theory, a global fitting for almost all available experimental data of $^{16}$O system has been multi-iteratively analyzed by our powerful code. A reliable, accurate and ...

  14. Astrophysical S factor of the 12C(α ,γ )6O reaction calculated with reduced R -matrix theory

    Science.gov (United States)

    An, Zhen-Dong; Chen, Zhen-Peng; Ma, Yu-Gang; Yu, Jian-Kai; Sun, Ye-Ying; Fan, Gong-Tao; Li, Yong-Jiang; Xu, Hang-Hua; Huang, Bo-Song; Wang, Kan

    2015-10-01

    Determination of the accurate astrophysical S factor of 12C(α ,γ )16O reaction has been regarded as the holy grail of nuclear astrophysics for decades. In current stellar models, a knowledge of that value to better than 10% is desirable. Due to the practical issues, tremendous experimental and theoretical efforts over nearly 50 years are not able to reach this goal, and the published values contradicted with each other strongly and their uncertainties are two times larger than the required precision. To this end we have developed a reduced R -matrix theory based on the classical R -matrix theory of Lane and Thomas, which treats primary transitions to the ground state and four bound states as the independent reaction channels in the channel spin representation. With the coordination of covariance statistics and error-propagation theory, a global fitting for almost all available experimental data of 16O system has been multi-iteratively analyzed by our powerful code. A reliable, accurate, and self-consistent astrophysical S factor of 12C(α ,γ )16O was obtained with a recommended value Stot(0.3 MeV ) =162.7 ±7.3 keV b (4.5%) which could meet the required precision.

  15. R-Matrix Analysis of Structures in Economic Indices: from Nuclear Reactions to High-Frequency Trading

    Science.gov (United States)

    Firk, Frank W. K.

    2014-03-01

    It is shown that the R-matrix theory of nuclear reactions is a viable mathematical theory for the description of the fine, intermediate and gross structure observed in the time-dependence of economic indices in general, and the daily Dow Jones Industrial Average in particular. A Lorentzian approximation to R-matrix theory is used to analyze the complex structures observed in the Dow Jones Industrial Average on a typical trading day. Resonant structures in excited nuclei are characterized by the values of their fundamental strength function, (average total width of the states)/(average spacing between adjacent states). Here, values of the ratios (average lifetime of individual states of a given component of the daily Dow Jones Industrial Average)/(average interval between the adjacent states) are determined. The ratios for the observed fine and intermediate structure of the index are found to be essentially constant throughout the trading day. These quantitative findings are characteristic of the highly statistical nature of many-body, strongly interacting systems, typified by daily trading. It is therefore proposed that the values of these ratios, determined in the first hour-or-so of trading, be used to provide valuable information concerning the likely performance of the fine and intermediate components of the index for the remainder of the trading day.

  16. Differentiation of Clinically Relevant mucorales Rhizopus microsporus and R. arrhizus by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS)

    NARCIS (Netherlands)

    Dolatabadi, S.; Kolecka, A.; Versteeg, Matthijs; de Hoog, Sybren G; Boekhout, Teun

    2015-01-01

    This study addresses the usefulness of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) for reliable identification of the two most frequently occuring clinical species of Rhizopus, namely R. arrhizus with its two varieties arrhizus and delemar and R. micro

  17. Photoionization of Co$^{+}$ and electron-impact excitation of Co$^{2+}$ using the Dirac R-matrix method

    CERN Document Server

    Tyndall, N B; Ballance, C P; Hibbert, A

    2016-01-01

    Modelling of massive stars and supernovae (SNe) plays a crucial role in understanding galaxies. From this modelling we can derive fundamental constraints on stellar evolution, mass-loss processes, mixing, and the products of nucleosynthesis. Proper account must be taken of all important processes that populate and depopulate the levels (collisional excitation, de-excitation, ionization, recombination, photoionization, bound-bound processes). For the analysis of Type Ia SNe and core collapse SNe (Types Ib, Ic and II) Fe group elements are particularly important. Unfortunately little data is currently available and most noticeably absent are the photoionization cross-sections for the Fe-peaks which have high abundances in SNe. Important interactions for both photoionization and electron-impact excitation are calculated using the relativistic Dirac Atomic $R$-matrix Codes (DARC) for low ionization stages of cobalt. All results are calculated up to photon energies of 45 eV and electron energies up to 20 eV. The w...

  18. R-matrix-incorporating-time theory of one-electron atomic and molecular systems in intense laser fields

    Science.gov (United States)

    Broin, Cathal Ó.; Nikolopoulos, L. A. A.

    2017-02-01

    In this thesis tutorial we discuss the R-matrix-incorporating-time ab initio theoretical framework for the solution of the time-dependent Schrödinger equation of one-electron atomic and molecular systems under strong electromagnetic fields. Within this approach, a division-of-space method is developed with the configuration space of the electron’s coordinates separated over two regions, the inner and outer regions. In the inner region the quantum system’s time-dependent wavefunction is expanded on the eigenstate basis set of its field-free Hamiltonian representation while in the outer region its grid representation is considered. The present tutorial describes in detail the theoretical formulation for one-electron quantum systems. Example calculations are discussed for atomic hydrogen, H, and the molecular hydrogen ion, {{{H}}}2+, in intense laser fields.

  19. A study of the threshold behavior in e{sup -} + HF scattering based on R-matrix theory

    Energy Technology Data Exchange (ETDEWEB)

    Nestmann, Bernd M. [Institut fuer Physikalische und Theoretische Chemie, Universitaet Bonn, Wegelerstrasse 12, 53115 Bonn, Nordhein-Westfalen (Germany)], E-mail: nestmann@thch.uni-bonn.de; Beyer, Thomas [Institut fuer Physikalische und Theoretische Chemie, Universitaet Bonn, Wegelerstrasse 12, 53115 Bonn, Nordhein-Westfalen (Germany)

    2008-01-29

    This study of the threshold behavior in e{sup -} + HF scattering presents fixed-nuclei R-matrix calculations for internuclear distances between 1.25 and 2.85 Bohr, including electron correlation to a high amount. On the whole, our results confirm the static exchange plus polarization (SEP) results of Morgan and Burke [J. Phys. B 21 (1988) 2091]. For internuclear separations close to 2.5 Bohr evidence for an electronic shape resonance was found. However, this resonance cannot be continued to sufficiently short distances in order to describe the collision process as a completely resonant process. Elastic and vibrationally inelastic cross sections are obtained within the Born-Oppenheimer approximation [B.I. Schneider, M. LeDourneuf, P.G. Burke, J. Phys. B 12 (1979) L365]. The agreement of the obtained cross sections with experimental results supports our conclusions drawn from the fixed-nuclei calculations.

  20. Monte Carlo simulation of transfer reactions using extended R-matrix theory picturing surrogate-type WFCF features

    Science.gov (United States)

    Bouland, Olivier H.

    2016-03-01

    This article supplies an overview of issues related to the interpretation of surrogate measurement results for neutron-incident cross section predictions; difficulties that are somehow masked by the historical conversion route based on Weisskopf-Ewing approximation. Our proposal is to handle the various difficulties by using a more rigorous approach relying on Monte Carlo simulation of transfer reactions with extended R-matrix theory. The multiple deficiencies of the historical surrogate treatment are recalled but only one is examined in some details here; meaning the calculation of in-out-going channel Width Fluctuation Correction Factors (WFCF) which behavior witness partly the failure of Niels Bohr's compound nucleus theoretical landmark. Relevant WFCF calculations according to neutron-induced surrogate- and cross section-types as a function of neutron-induced fluctuating energy range [0 - 2.1 MeV] are presented and commented in the case of the 240Pu* and 241Pu* compound nucleus isotopes.

  1. NLTE analysis of Sr lines in spectra of late-type stars with new R-matrix atomic data

    CERN Document Server

    Bergemann, M; Bautista, M; Ruchti, G

    2012-01-01

    We investigate statistical equilibrium of neutral and singly-ionized strontium in late-type stellar atmospheres. Particular attention is given to the completeness of the model atom, which includes new energy levels, transition probabilities, photoionization and electron-impact excitation cross-sections computed with the R-matrix method. The NLTE model is applied to the analysis of Sr I and Sr II lines in the spectra of the Sun, Procyon, Arcturus, and HD 122563, showing a significant improvement in the ionization balance compared to LTE line formation calculations, which predict abundance discrepancies of up to 0.5 dex. The solar Sr abundance is log A = 2.93 \\pm 0.04 dex, in agreement with the meteorites. A grid of NLTE abundance corrections for Sr I and Sr II lines covering a large range of stellar parameters is presented.

  2. An Extended r-Matrix Formula and its Applications%一个扩展的r矩阵及其应用

    Institute of Scientific and Technical Information of China (English)

    徐英; 王素霞

    2015-01-01

    发展并应用孤立子方程的谱问题非线性化方法到对称矩阵Kaup-Newell方程上。得到了一个扩展的r矩阵,并应用r矩阵方法证明了对称矩阵kaup-Newell方程的有限维Hamilton系统是Liouville完全可积的。%The approach of nonlinearization of spectral problem is extended and applied to the symmetric matrix Kaup-Newell equation .An extended r-matrix formula is presented .The complete integrability in the Liouville sense of the finite dimensional Hamiltonian system which results from the symmetric matrix Kaup -Newell equation is established in the framework of r -matrix.

  3. Two-electron R-matrix approach to calculations of potential-energy curves of long-range Rydberg molecules

    Science.gov (United States)

    Tarana, Michal; Čurík, Roman

    2016-05-01

    We introduce a computational method developed for study of long-range molecular Rydberg states of such systems that can be approximated by two electrons in a model potential of the atomic cores. The method is based on a two-electron R-matrix approach inside a sphere centered on one of the atoms. The wave function is then connected to a Coulomb region outside the sphere via a multichannel version of the Coulomb Green's function. This approach is applied to a study of Rydberg states of Rb2 for internuclear separations R from 40 to 320 bohrs and energies corresponding to n from 7 to 30. We report bound states associated with the low-lying 3Po resonance and with the virtual state of the rubidium atom that turn into ion-pair-like bound states in the Coulomb potential of the atomic Rydberg core. The results are compared with previous calculations based on single-electron models employing a zero-range contact-potential and short-range modele potential. Czech Science Foundation (Project No. P208/14-15989P).

  4. New R-matrix calculations of neutral W electron-impact excitation and ionization for PFC erosion diagnostics

    Science.gov (United States)

    Loch, S. D.; Ennis, D. A.; Pindzola, M. S.; Johnson, C. A.; Ballance, C. P.; Abrams, T.; Unterberg, E.

    2016-10-01

    The erosion rate of tungsten PFCs can be diagnosed spectroscopically using spectral line intensity measurements combined with a set of `ionizations per photon' coefficients (also called S/XB ratios). The accuracy of this diagnostic technique depends critically upon the quality of the atomic data comprising the S/XB ratio. This project aims to improve the accuracy of W excitation and ionization atomic data using non-perturbative methods. Synthetic spectra generated from existing perturbative W data are used to guide the size of the new R-matrix calculations. The new data is used to generate a synthetic spectrum, which is compared with measured DIII-D ultraviolet spectra to determine the optimal lines for diagnosing W erosion. The new ionization rate coefficients are compared with literature values. The new S/XB ratio for the 400.9 nm line is compared with measured values and the density, temperature and metastable dependence of the S/XB ratios for new UV lines are investigated. Work supported by USDOE Grant DE-SC0015877.

  5. Photoionization of Co+ and electron-impact excitation of Co2 + using the Dirac R-matrix method

    Science.gov (United States)

    Tyndall, N. B.; Ramsbottom, C. A.; Ballance, C. P.; Hibbert, A.

    2016-11-01

    Modelling of massive stars and supernovae (SNe) plays a crucial role in understanding galaxies. From this modelling we can derive fundamental constraints on stellar evolution, mass-loss processes, mixing, and the products of nucleosynthesis. Proper account must be taken of all important processes that populate and depopulate the levels (collisional excitation, de-excitation, ionization, recombination, photoionization, bound-bound processes). For the analysis of Type Ia SNe and core collapse SNe (Types Ib, Ic and II) Fe group elements are particularly important. Unfortunately little data is currently available and most noticeably absent are the photoionization cross-sections for the Fe-peaks which have high abundances in SNe. Important interactions for both photoionization and electron-impact excitation are calculated using the relativistic Dirac atomic R-matrix codes (DARC) for low-ionization stages of Cobalt. All results are calculated up to photon energies of 45 eV and electron energies up to 20 eV. The wavefunction representation of Co III has been generated using GRASP0 by including the dominant 3d7, 3d6[4s, 4p], 3p43d9 and 3p63d9 configurations, resulting in 292 fine structure levels. Electron-impact collision strengths and Maxwellian averaged effective collision strengths across a wide range of astrophysically relevant temperatures are computed for Co III. In addition, statistically weighted level-resolved ground and metastable photoionization cross-sections are presented for Co II and compared directly with existing work.

  6. Monte Carlo simulation of transfer reactions using extended R-matrix theory picturing surrogate-type WFCF features

    Directory of Open Access Journals (Sweden)

    Bouland Olivier H.

    2016-01-01

    Full Text Available This article supplies an overview of issues related to the interpretation of surrogate measurement results for neutron-incident cross section predictions; difficulties that are somehow masked by the historical conversion route based on Weisskopf-Ewing approximation. Our proposal is to handle the various difficulties by using a more rigorous approach relying on Monte Carlo simulation of transfer reactions with extended R-matrix theory. The multiple deficiencies of the historical surrogate treatment are recalled but only one is examined in some details here; meaning the calculation of in-out-going channel Width Fluctuation Correction Factors (WFCF which behavior witness partly the failure of Niels Bohr’s compound nucleus theoretical landmark. Relevant WFCF calculations according to neutron-induced surrogate- and cross section-types as a function of neutron-induced fluctuating energy range [0 - 2.1 MeV] are presented and commented in the case of the 240Pu* and 241Pu* compound nucleus isotopes.

  7. Towards R-matrix construction of Khovanov-Rozansky polynomials. I. Primary $T$-deformation of HOMFLY

    CERN Document Server

    Anokhina, A

    2014-01-01

    We elaborate on the simple alternative from arXiv:1308.5759 to the matrix-factorization construction of Khovanov-Rozansky (KR) polynomials for arbitrary knots and links in the fundamental representation of arbitrary SL(N). Construction consists of two steps: with every link diagram with m vertices one associates an m-dimensional hypercube with certain q-graded vector spaces, associated to its 2^m vertices. A generating function for q-dimensions of these spaces is what we suggest to call the primary T-deformation of HOMFLY polynomial -- because, as we demonstrate, it can be explicitly reduced to calculations of ordinary HOMFLY polynomials, i.e. to manipulations with quantum R-matrices. The second step is a certain minimization of residues of this new polynomial with respect to T+1. Minimization is ambiguous and is actually specified by the choice of commuting cut-and-join morphisms, acting along the edges of the hypercube -- this promotes it to Abelian quiver, and KR polynomial is a Poincare polynomial of asso...

  8. Matrix Remodeling Promotes Pulmonary Hypertension through Feedback Mechanoactivation of the YAP/TAZ-miR-130/301 Circuit

    Directory of Open Access Journals (Sweden)

    Thomas Bertero

    2015-11-01

    Full Text Available Pulmonary hypertension (PH is a deadly vascular disease with enigmatic molecular origins. We found that vascular extracellular matrix (ECM remodeling and stiffening are early and pervasive processes that promote PH. In multiple pulmonary vascular cell types, such ECM stiffening induced the microRNA-130/301 family via activation of the co-transcription factors YAP and TAZ. MicroRNA-130/301 controlled a PPARγ-APOE-LRP8 axis, promoting collagen deposition and LOX-dependent remodeling and further upregulating YAP/TAZ via a mechanoactive feedback loop. In turn, ECM remodeling controlled pulmonary vascular cell crosstalk via such mechanotransduction, modulation of secreted vasoactive effectors, and regulation of associated microRNA pathways. In vivo, pharmacologic inhibition of microRNA-130/301, APOE, or LOX activity ameliorated ECM remodeling and PH. Thus, ECM remodeling, as controlled by the YAP/TAZ-miR-130/301 feedback circuit, is an early PH trigger and offers combinatorial therapeutic targets for this devastating disease.

  9. Bargmann型有限维哈密顿系统的Lax表示和动态r-矩阵%Lax Representation and Dynamical r-matrix for a Bargmann-type Finite-dimensional Hamiltonian System

    Institute of Scientific and Technical Information of China (English)

    陈金兵; 史大

    2005-01-01

    给出了一Bargmann型有限维哈密顿系统的Lax表示及其在Poisson括号下的动态r-矩阵关系,从而利用一般r-矩阵理论证明了此Bargmann型有限维哈密顿系统在Liouville意义下的完全可积性.%The integrability for a finite-dimensional Hamiltonian system (FDHS) is studied. For this purpose the explicit Lax representation of the FDHS is calculated. It is remarkable to see that the Lax representation admits a dynamical r-matrix formula instead of a classical one in the Poisson bracket. Consequently the integrability of the FDHS is completed in the framework of r-matrix theory.

  10. Measurement and R-matrix analysis of the nitrogen-15(p,gamma0)oxygen-16 reaction cross section

    Science.gov (United States)

    Leblanc, Paul James, IV

    2010-12-01

    Along with the p-p chains, the CNO cycle is the main source of energy production inside of stars with masses larger than the sun. The 15 N + p reaction is the first branch point of this cycle, where the (p,alpha) reaction returns material to the CN cycle and the (p,gamma) reaction leads to the NO cycle, and thus plays a role in determining the final energy production of the process and influences the abundances of oxygen isotopes. This project involves obtaining new measurements for the 15N(p,gamma 0)16O reaction. Dominated by two broad resonances at Ep = 338 and 1028 keV [45], measurements of this reaction were performed in the proton energy range from 1800 keV down to 130 keV. Particular attention was paid to the area between the two dominant resonances, along with the low energy region, as these are the most important regions in determining the S(0) extrapolations [48]. To obtain this measurement, article accelerators at both the University of Notre Dame's Nuclear Science Laboratory (NSL) and the Underground Laboratory for Nuclear Astrophysics (LUNA) in Gran Sasso, Italy were used. In both locations, high purity germanium detectors were used to detect gamma-rays from the reaction of around 13 MeV. It was not possible to measure down to energies corresponding to relevant stellar environment temperatures, and so theoretical fits and extrapolations to the data must be made. To this end, the multi-level, multi-channel R-matrix code AZURE was used. The resulting S factor calculations were used to calculate new reaction rates for different temperature values, and gives up to a factor of 2 difference from currently used compilations [4].

  11. R-Matrix Evaluation of 16O Neutron Cross Sections up to 6.3 MeV

    Energy Technology Data Exchange (ETDEWEB)

    Sayer, R.O.

    2000-08-21

    In this paper we describe an evaluation of {sup 16}O neutron cross sections in the resolved resonance region with the multilevel Reich-Moore R-matrix formalism. Resonance analyses were performed with the computer code SAMMY [LA98] which utilizes Bayes method, a generalized least squares technique. Over the years the nuclear community has developed a collection of evaluated nuclear data for applications in thermal, fast reactor, and fusion systems. However, typical neutron spectra in criticality safety applications are different from the spectra relevant to thermal, fast reactor, and fusion systems. In fact, the neutron spectra important for these non-reactor systems appear to peak in the epithermal energy range. Nuclear data play a major role in the calculation of the criticality safety margins for these systems. A thorough examination of how the present collection of nuclear data evaluations behaves in criticality safety calculations is needed. Many older evaluations will probably need to be revised, and new evaluations will be needed. Oxygen is an important element in criticality safety applications where oxides are present in significant abundance. The existing ENDF/B-VI.5 evaluation is expressed in terms of point-wise cross sections derived from the analysis of G. Hale [HA91]. Unfortunately such an evaluation is not directly useful for resonance analysis of data from samples in which oxygen is combined with other elements; for that purpose, Reich-Moore resonance parameters are needed. This paper addresses the task of providing those parameters. In the following sections we discuss the data, resonance analysis procedure, and results.

  12. A q-boson representation of Zamolodchikov-Faddeev algebra for stochastic R matrix of \\varvec{U_q(A^{(1)}_n)}

    Science.gov (United States)

    Kuniba, Atsuo; Okado, Masato

    2016-12-01

    We construct a q-boson representation of the Zamolodchikov-Faddeev algebra whose structure function is given by the stochastic R matrix of U_q(A^{(1)}_n) introduced recently. The representation involves quantum dilogarithm type infinite products in the n(n-1)/2 -fold tensor product of q-bosons. It leads to a matrix product formula of the stationary probabilities in the U_q(A_n^{(1)}) -zero range process on a one-dimensional periodic lattice.

  13. miR-204-5p acts as a tumor suppressor by targeting matrix metalloproteinases-9 and B-cell lymphoma-2 in malignant melanoma

    Science.gov (United States)

    Luan, Wenkang; Qian, Yao; Ni, Xin; Bu, Xuefeng; Xia, Yun; Wang, Jinlong; Ruan, Hongru; Ma, Shaojun; Xu, Bin

    2017-01-01

    An increasing number of microRNAs have been found to be involved in tumorigenesis, including melanoma tumorigenesis. miR-204-5p is down-regulated and functions as a tumor suppressor in many human malignant tumors. miR-204-5p expression is also decreased in melanoma tissues, but its biological roles and molecular mechanisms in malignant melanoma remain unclear. In this study, the aberrant down-regulation of miR-204-5p was detected in melanoma, especially in metastatic melanoma. miR-204-5p also served as a protective factor for the prognosis of melanoma patients. We determined that miR-204-5p suppresses cell proliferation, migration and invasion, and promotes cell apoptosis in melanoma. Matrix metalloproteinases-9 and B-cell lymphoma-2 are the functional targets of miR-204-5p, through which it plays an important biological role in malignant melanoma. The effect of miR-204-5p on malignant melanoma is verified using a xenograft model. We also determined that miR-204-5p increases 5-fluorouracil and cisplatin (DDP) chemosensitivity in malignant melanoma cells. This finding elucidates new functions and mechanisms for miR-204-5p in melanoma development, and provides potential therapeutic targets for the treatment of melanoma.

  14. Association of DNA with nuclear matrix in in vitro assembled nuclei induced by rDNA from Tetrahymena shanghaiensis in Xenopus egg extracts

    Institute of Scientific and Technical Information of China (English)

    CHENYING; BOZHANG; 等

    1997-01-01

    The nuclei assembled from exogenous DNA or chromatin in egg extracts resemble their in vivo counterparts in many aspects.However,the distribution pattern of DNA in these nuclei remains unknown.We introduced rDNA from the macronuclei of Tetrahymena into Xenopus cellfree extracts to examine the association of specific DNA sequences with nuclear matrix(NM) in the nuclei assembled in vitro.Our previous works showed the 5'NTS(nontranscription sequences) of the rDNA specifically bind to the NM system in the macronuclei.We show now the rDNA could induce chromatin assembly and nuclear formation in Xenopus cell-free system.When we extracted the NM system and compared the binding affinity of different regions of rDNA with the NM system,we found that the 5'NTS still hold their binding affinity with insoluble structure of the assembled nuclei in the estracts of Xenopus eggs.

  15. Dysregulated miR-127-5p contributes to type II collagen degradation by targeting matrix metalloproteinase-13 in human intervertebral disc degeneration.

    Science.gov (United States)

    Hua, Wen-Bin; Wu, Xing-Huo; Zhang, Yu-Kun; Song, Yu; Tu, Ji; Kang, Liang; Zhao, Kang-Cheng; Li, Shuai; Wang, Kun; Liu, Wei; Shao, Zeng-Wu; Yang, Shu-Hua; Yang, Cao

    2017-08-01

    Intervertebral disc degeneration (IDD) is a chronic disease associated with the degradation of extracellular matrix (ECM). Matrix metalloproteinase (MMP)-13 is a major enzyme that mediates the degradation of ECM components. MMP-13 has been predicted to be a potential target of miR-127-5p. However, the exact function of miR-127-5p in IDD is still unclear. We designed this study to evaluate the correlation between miR-127-5p level and the degeneration of human intervertebral discs and explore the potential mechanisms. miR-127-5p levels and MMP-13 mRNA levels were detected by quantitative real-time polymerase chain reaction (qPCR). To determine whether MMP-13 is a target of miR-127-5p, dual luciferase reporter assays were performed. miR-127-5p mimic and miR-127-5p inhibitor were used to overexpress or downregulate miR-127-5p expression in human NP cells, respectively. Small interfering RNA (siRNA) was used to knock down MMP-13 expression in human NP cells. Type II collagen expression in human NP cells was detected by qPCR, western blotting, and immunofluorescence staining. We confirmed that miR-127-5p was significantly downregulated in nucleus pulposus (NP) tissue of degenerative discs and its expression was inversely correlated with MMP-13 mRNA levels. We reveal that MMP-13 may act as a target of miR-127-5p. Expression of miR-127-5p was inversely correlated with type II collagen expression in human NP cells. Moreover, suppression of MMP-13 expression by siRNA blocked downstream signaling and increased type II collagen expression. Dysregulated miR-127-5p contributed to the degradation of type II collagen by targeting MMP-13 in human IDD. Our findings highlight that miR-127-5p may serve as a new therapeutic target in IDD. Copyright © 2017 Elsevier B.V. and Société Française de Biochimie et Biologie Moléculaire (SFBBM). All rights reserved.

  16. Effect of tritium reduction in determining energy gain by using R-matrix method direct laser fusion in D-T reaction

    Institute of Scientific and Technical Information of China (English)

    S.N. HOSSEINI MOTLAGH; Sh.S.MOHAMADY; M.Kh. MORADKHANI; R. SHAMSI

    2007-01-01

    The laser fusion criterion is known as the ρR-Criterion, also called high-gain condition. This parameter is temperature dependent and can be calculated by R-matrix method. This method is applied for determining improved fusion cross-section for the reactions T(d,n)4He, 3He(d,p)4He, D(d,p)T, D(d,n)3He. In this paper the time dependent reaction rate equations for fusion reaction T(d,n)4He are solved and by using the obtained results we computed the fusion power density, energy gain versus temperature and pR-parameter. The obtained results show that a suitable combination may be a deuterium fraction fD=0.65 and fT=0.35 which would lead 30% reduction in the tritium content of the fuel mixture, and this choice would not change the energy gain value very much. Finally, the obtained energy gain for D-T reaction by using R-matrix is in good agreement with other theories.

  17. miR-204-5p acts as a tumor suppressor by targeting matrix metalloproteinases-9 and B-cell lymphoma-2 in malignant melanoma

    Directory of Open Access Journals (Sweden)

    Luan WK

    2017-02-01

    Full Text Available Wenkang Luan,1,* Yao Qian,2,* Xin Ni,3,* Xuefeng Bu,4 Yun Xia,1 Jinlong Wang,1 Hongru Ruan,1 Shaojun Ma,1 Bin Xu1 1Department of Plastic Surgery, 2Department of Neurosurgery, 3Department of Gastroenterology, 4Department of General Surgery, Affiliated People’s Hospital of Jiangsu University, Zhenjiang, Jiangsu, People’s Republic of China *These authors contributed equally to this work Abstract: An increasing number of microRNAs have been found to be involved in tumorigenesis, including melanoma tumorigenesis. miR-204-5p is down-regulated and functions as a tumor suppressor in many human malignant tumors. miR-204-5p expression is also decreased in melanoma tissues, but its biological roles and molecular mechanisms in malignant melanoma remain unclear. In this study, the aberrant down-regulation of miR-204-5p was detected in melanoma, especially in metastatic melanoma. miR-204-5p also served as a protective factor for the prognosis of melanoma patients. We determined that miR-204-5p suppresses cell proliferation, migration and invasion, and promotes cell apoptosis in melanoma. Matrix metalloproteinases-9 and B-cell lymphoma-2 are the functional targets of miR-204-5p, through which it plays an important biological role in malignant melanoma. The effect of miR-204-5p on malignant melanoma is verified using a xenograft model. We also determined that miR-204-5p increases 5-fluorouracil and cisplatin (DDP chemosensitivity in malignant melanoma cells. This finding elucidates new functions and mechanisms for miR-204-5p in melanoma development, and provides potential therapeutic targets for the treatment of melanoma. Keywords: miR-204-5p, MMP9, BCL2, melanoma, cell apoptosis, migration, invasion

  18. The effect of enamel matrix derivative (Emdogain(R)) on gene expression profiles of human primary alveolar bone cells

    NARCIS (Netherlands)

    Yan, X.Z.; Rathe, F.; Gilissen, C.; Zande, M. van der; Veltman, J.; Junker, R.; Yang, F.; Jansen, J.A.; Walboomers, X.F.

    2014-01-01

    Emdogain(R) is frequently used in regenerative periodontal treatment. Understanding its effect on gene expression of bone cells would enable new products and pathways promoting bone formation to be established. The aim of the study was to analyse the effect of Emdogain(R) on expression profiles of h

  19. miR-21 may acts as an oncomir by targeting RECK, a matrix metalloproteinase regulator, in prostate cancer

    Science.gov (United States)

    2012-01-01

    Background Prognosis of prostate cancer (PCa) is based mainly in histological aspects together with PSA serum levels that not always reflect the real aggressive potential of the neoplasia. The micro RNA (miRNA) mir-21 has been shown to regulate invasiveness in cancer through translational repression of the Metaloproteinase (MMP) inhibitor RECK. Our aim is to investigate the levels of expression of RECK and miR-21 in PCa comparing with classical prognostic factors and disease outcome and also test if RECK is a target of miR-21 in in vitro study using PCa cell line. Materials and methods To determine if RECK is a target of miR-21 in prostate cancer we performed an in vitro assay with PCa cell line DU-145 transfected with pre-miR-21 and anti-miR-21. To determine miR-21 and RECK expression levels in PCa samples we performed quantitative real-time polymerase chain reaction (qRT-PCR). Results The in vitro assays showed a decrease in expression levels of RECK after transfection with pre-miR-21, and an increase of MMP9 that is regulated by RECK compared to PCa cells treated with anti-miR-21. We defined three profiles to compare the prognostic factors. The first was characterized by miR-21 and RECK underexpression (N = 25) the second was characterized by miR-21 overexpression and RECK underexpression (N = 12), and the third was characterized by miR-21 underexpression and RECK overexpression (N = 16). From men who presented the second profile (miR-21 overexpression and RECK underexpression) 91.7% were staged pT3. For the other two groups 48.0%, and 46.7% of patients were staged pT3 (p = 0.025). Conclusions Our results demonstrate RECK as a target of miR-21. We believe that miR-21 may be important in PCa progression through its regulation of RECK, a known regulator of tumor cell invasion. PMID:22642976

  20. miR-21 may acts as an oncomir by targeting RECK, a matrix metalloproteinase regulator, in prostate cancer

    Directory of Open Access Journals (Sweden)

    Reis Sabrina

    2012-05-01

    Full Text Available Abstract Background Prognosis of prostate cancer (PCa is based mainly in histological aspects together with PSA serum levels that not always reflect the real aggressive potential of the neoplasia. The micro RNA (miRNA mir-21 has been shown to regulate invasiveness in cancer through translational repression of the Metaloproteinase (MMP inhibitor RECK. Our aim is to investigate the levels of expression of RECK and miR-21 in PCa comparing with classical prognostic factors and disease outcome and also test if RECK is a target of miR-21 in in vitro study using PCa cell line. Materials and methods To determine if RECK is a target of miR-21 in prostate cancer we performed an in vitro assay with PCa cell line DU-145 transfected with pre-miR-21 and anti-miR-21. To determine miR-21 and RECK expression levels in PCa samples we performed quantitative real-time polymerase chain reaction (qRT-PCR. Results The in vitro assays showed a decrease in expression levels of RECK after transfection with pre-miR-21, and an increase of MMP9 that is regulated by RECK compared to PCa cells treated with anti-miR-21. We defined three profiles to compare the prognostic factors. The first was characterized by miR-21 and RECK underexpression (N = 25 the second was characterized by miR-21 overexpression and RECK underexpression (N = 12, and the third was characterized by miR-21 underexpression and RECK overexpression (N = 16. From men who presented the second profile (miR-21 overexpression and RECK underexpression 91.7% were staged pT3. For the other two groups 48.0%, and 46.7% of patients were staged pT3 (p = 0.025. Conclusions Our results demonstrate RECK as a target of miR-21. We believe that miR-21 may be important in PCa progression through its regulation of RECK, a known regulator of tumor cell invasion.

  1. Electron impact excitation collision strengths for neon-like Ni XIX calculated using the relativistic R-matrix method

    Indian Academy of Sciences (India)

    K M Aggarwal; F P Keenan

    2006-09-01

    In a recent paper [Pramana - J. Phys. 64, 129 (2005)] results have been presented for electron impact excitation collision strengths for transitions among the fine-structure levels of the 2s22p6 and 2s22p53s configurations of Ni XIX. In this paper we demonstrate through an independent calculation with the relativistic -matrix code that those results are unreliable and the conclusions drawn are invalid.

  2. Spin and spatial dynamics in electron-impact scattering off S-wave He using R-matrix with Time-Dependence theory

    CERN Document Server

    Wragg, Jack

    2016-01-01

    R-matrix with time-dependence theory is applied to electron-impact ionisation processes for He in the S-wave model. Cross sections for electron-impact excitation, ionisation and ionisation with excitation for impact energies between 25 and 225 eV are in excellent agreement with benchmark cross sections. Ultra-fast dynamics induced by a scattering event is observed through time-dependent signatures associated with autoionisation from doubly excited states. Further insight into dynamics can be obtained through examination of the spin components of the time-dependent wavefunction.

  3. Harmonic generation by noble-gas atoms in the near-IR regime using ab initio time-dependent R -matrix theory

    Science.gov (United States)

    Hassouneh, O.; Brown, A. C.; van der Hart, H. W.

    2014-10-01

    We demonstrate the capability of ab initio time-dependent R -matrix theory to obtain accurate harmonic generation spectra of noble-gas atoms at near-IR wavelengths between 1200 and 1800 nm and peak intensities up to 1.8 × 10 14 W /cm 2. To accommodate the excursion length of the ejected electron, we use an angular-momentum expansion up to Lmax=279 . The harmonic spectra show evidence of atomic structure through the presence of a Cooper minimum in harmonic generation for Kr, and of multielectron interaction through the giant resonance for Xe. The theoretical spectra agree well with those obtained experimentally.

  4. Harmonic generation of noble-gas atoms in the Near-IR regime using ab-initio time-dependent R-matrix theory

    CERN Document Server

    Hassouneh, O; van der Hart, H W

    2014-01-01

    We demonstrate the capability of ab-initio time-dependent R-matrix theory to obtain accurate harmonic generation spectra of noble-gas atoms at Near-IR wavelengths between 1200 and 1800 nm and peak intensities up to 1.8 X 10(14) W/cm(2) . To accommodate the excursion length of the ejected electron, we use an angular-momentum expansion up to Lmax = 279. The harmonic spectra show evidence of atomic structure through the presence of a Cooper minimum in harmonic generation for Kr, and of multielectron interaction through the giant resonance for Xe. The theoretical spectra agree well with those obtained experimentally.

  5. MicroRNA miR-182 cluster mediated modulation of RECK without changes in cell surface membrane type-1 matrix metalloproteinase (MT1-MMP).

    Science.gov (United States)

    Silva, Milagros; Hernandez, Maria E; Rojas, Fausto; Li, Lihua; Subramanian, Subbaya; Wilson, Michael J

    2015-01-01

    Cell surface localized membrane type 1-matrix metalloproteinase (MT1-MMP) plays an important role in physiological and pathological processes and its function can be regulated by proteins such as RECK. We examined the ability of miR-182 (one of the miR-183 cluster miRNAs), which can target RECK, to control cell surface MT1-MMP activity. Expression of RECK mRNA and protein was increased with anti-miRs to miR-182, miR-183 or miR-96 in HT1080 fibrosarcoma cells, but, decreased RECK mRNA and increased its protein in the benign prostatic hyperplasia cell line BPH-1. Treatment of BPH-1 and HT-1080 cells with the anti-miRs did not change the level of cell surface MT1-MMP activity, nor their rate of migration in an in vitro wound-healing assay. Trichostatin A (TSA) did not increase the level of RECK, but blocked cell surface MT1-MMP activity and decreased cell motility. Anti-miRs mediated increased RECK levels did not interfere with cell surface MT1-MMP function, and TSA may block cell surface localization of MT1-MMP by a mechanism independent of RECK.

  6. Biofilm formation by Bacillus subtilis requires an endoribonuclease-containing multisubunit complex that controls mRNA levels for the matrix gene repressor SinR.

    Science.gov (United States)

    DeLoughery, Aaron; Dengler, Vanina; Chai, Yunrong; Losick, Richard

    2016-01-01

    Biofilm formation by Bacillus subtilis is largely governed by a circuit in which the response regulator Spo0A turns on the gene for the anti-repressor SinI. SinI, in turn, binds to and inactivates SinR, a dedicated repressor of genes for matrix production. Mutants of the genes ylbF, ymcA and yaaT are blocked in biofilm formation, but the mechanism by which they act has been mysterious. A recent report attributed their role in biofilm formation to stimulating Spo0A activity. However, we detect no measurable effect on the transcription of sinI. Instead, we find that the block in biofilm formation is caused by an increase in the levels of SinR and of its mRNA. Evidence is presented that YlbF, YmcA and YaaT interact with, and control the activity of, RNase Y, which is known to destabilize sinR mRNA. We also show that the processing of another target of RNase Y, cggR-gapA mRNA, similarly depends on YlbF and YmcA. Our work suggests that sinR mRNA stability is an additional posttranscriptional control mechanism governing the switch to multicellularity and raises the possibility that YlbF, YmcA and YaaT broadly regulate mRNA stability as part of an RNase Y-containing, multi-subunit complex.

  7. Functionality and stability data of detergent purified nAChR from Torpedo using lipidic matrixes and macroscopic electrophysiology

    Directory of Open Access Journals (Sweden)

    Luis F. Padilla-Morales

    2016-03-01

    Full Text Available The presented data provides additional information about the assessment of affinity purified nicotinic acetylcholine receptor (nAChR rich membrane solubilized with long chain (16 saturated carbons lysophospholipid with glycerol headgroup (LFG-16. The assessment of stability and functionality of solubilized membrane protein is a critical step prior to further crystallization trails. One of the key factors for this task is the appropriate choice of a detergent that can support nAChR activity and stability comparable to the crude membranes. The stability of the nAChR-LFG-16 complex incorporated into lipid cubic phase (LCP was monitored for a period of 30 days by means of fluorescence recovery after photobleaching (FRAP and the functionality was evaluated after its incorporation into Xenopus oocyte by means of the two electrode voltage clamp technique.

  8. Loss of miR-203 regulates cell shape and matrix adhesion through ROBO1/Rac/FAK in response to stiffness.

    Science.gov (United States)

    Le, Lily Thao-Nhi; Cazares, Oscar; Mouw, Janna K; Chatterjee, Sharmila; Macias, Hector; Moran, Angel; Ramos, Jillian; Keely, Patricia J; Weaver, Valerie M; Hinck, Lindsay

    2016-03-14

    Breast tumor progression is accompanied by changes in the surrounding extracellular matrix (ECM) that increase stiffness of the microenvironment. Mammary epithelial cells engage regulatory pathways that permit dynamic responses to mechanical cues from the ECM. Here, we identify a SLIT2/ROBO1 signaling circuit as a key regulatory mechanism by which cells sense and respond to ECM stiffness to preserve tensional homeostasis. We observed that Robo1 ablation in the developing mammary gland compromised actin stress fiber assembly and inhibited cell contractility to perturb tissue morphogenesis, whereas SLIT2 treatment stimulated Rac and increased focal adhesion kinase activity to enhance cell tension by maintaining cell shape and matrix adhesion. Further investigation revealed that a stiff ECM increased Robo1 levels by down-regulating miR-203. Consistently, patients whose tumor expressed a low miR-203/high Robo1 expression pattern exhibited a better overall survival prognosis. These studies show that cells subjected to stiffened environments up-regulate Robo1 as a protective mechanism that maintains cell shape and facilitates ECM adherence.

  9. Status of the R-matrix Code AMUR toward a consistent cross-section evaluation and covariance analysis for the light nuclei

    Science.gov (United States)

    Kunieda, Satoshi

    2017-09-01

    We report the status of the R-matrix code AMUR toward consistent cross-section evaluation and covariance analysis for the light-mass nuclei. The applicable limit of the code is extended by including computational capability for the charged-particle elastic scattering cross-sections and the neutron capture cross-sections as example results are shown in the main texts. A simultaneous analysis is performed on the 17O compound system including the 16O(n,tot) and 13C(α,n)16O reactions together with the 16O(n,n) and 13C(α,α) scattering cross-sections. It is found that a large theoretical background is required for each reaction process to obtain a simultaneous fit with all the experimental cross-sections we analyzed. Also, the hard-sphere radii should be assumed to be different from the channel radii. Although these are technical approaches, we could learn roles and sources of the theoretical background in the standard R-matrix.

  10. Benchmarking a modified version of the civ3 nonrelativistic atomic-structure code within Na-like-tungsten R -matrix calculations

    Science.gov (United States)

    Turkington, M. D.; Ballance, C. P.; Hibbert, A.; Ramsbottom, C. A.

    2016-08-01

    In this work we explore the validity of employing a modified version of the nonrelativistic structure code civ3 for heavy, highly charged systems, using Na-like tungsten as a simple benchmark. Consequently, we present radiative and subsequent collisional atomic data compared with corresponding results from a fully relativistic structure and collisional model. Our motivation for this line of study is to benchmark civ3 against the relativistic grasp0 structure code. This is an important study as civ3 wave functions in nonrelativistic R -matrix calculations are computationally less expensive than their Dirac counterparts. There are very few existing data for the W LXIV ion in the literature with which we can compare except for an incomplete set of energy levels available from the NIST database. The overall accuracy of the present results is thus determined by the comparison between the civ3 and grasp0 structure codes alongside collisional atomic data computed by the R -matrix Breit-Pauli and Dirac codes. It is found that the electron-impact collision strengths and effective collision strengths computed by these differing methods are in good general agreement for the majority of the transitions considered, across a broad range of electron temperatures.

  11. Loss of miR-203 regulates cell shape and matrix adhesion through ROBO1/Rac/FAK in response to stiffness

    Science.gov (United States)

    Le, Lily Thao-Nhi; Cazares, Oscar; Mouw, Janna K.; Chatterjee, Sharmila; Macias, Hector; Moran, Angel; Ramos, Jillian; Keely, Patricia J.; Weaver, Valerie M.

    2016-01-01

    Breast tumor progression is accompanied by changes in the surrounding extracellular matrix (ECM) that increase stiffness of the microenvironment. Mammary epithelial cells engage regulatory pathways that permit dynamic responses to mechanical cues from the ECM. Here, we identify a SLIT2/ROBO1 signaling circuit as a key regulatory mechanism by which cells sense and respond to ECM stiffness to preserve tensional homeostasis. We observed that Robo1 ablation in the developing mammary gland compromised actin stress fiber assembly and inhibited cell contractility to perturb tissue morphogenesis, whereas SLIT2 treatment stimulated Rac and increased focal adhesion kinase activity to enhance cell tension by maintaining cell shape and matrix adhesion. Further investigation revealed that a stiff ECM increased Robo1 levels by down-regulating miR-203. Consistently, patients whose tumor expressed a low miR-203/high Robo1 expression pattern exhibited a better overall survival prognosis. These studies show that cells subjected to stiffened environments up-regulate Robo1 as a protective mechanism that maintains cell shape and facilitates ECM adherence. PMID:26975850

  12. A large-scale R-matrix calculation for electron-impact excitation of the Ne{sup 2+}, O-like ion

    Energy Technology Data Exchange (ETDEWEB)

    McLaughlin, B M [Centre for Theoretical Atomic, Molecular and Optical Physics (CTAMOP), School of Mathematics and Physics, David Bates Building, 7 College Park, Queen' s University Belfast, Belfast BT7 1NN (United Kingdom); Lee, Teck-Ghee; Ludlow, J A; Loch, S D; Pindzola, M S; Ballance, C P [Department of Physics, Auburn University, Auburn, AL 36849 (United States); Landi, E, E-mail: b.mclaughlin@qub.ac.uk, E-mail: ballance@physics.auburn.edu [Department of Atmospheric, Oceanic and Space Sciences, University of Michigan, Ann Arbor MI 48109 (United States)

    2011-09-14

    The five J{Pi} levels within an np{sup 2} or np{sup 4} ground-state complex provide an excellent testing ground for the comparison of theoretical line ratios with astrophysically observed values, in addition to providing valuable electron temperature and density diagnostics. The low-temperature nature of the line ratios ensures that the theoretically derived values are sensitive to the underlying atomic structure and electron-impact excitation rates. Previous R-matrix calculations for the O-like Ne ion, Ne{sup 2+}, exhibit spurious structure in the cross sections at higher electron energies, which may affect Maxwellian averaged rates even at low temperatures. Furthermore, there is an absence of comprehensive excitation data between the excited states that may provide newer diagnostics to complement the more established lines discussed in this paper. To resolve these issues, we present both a small-scale 56-level Breit-Pauli calculation and a large-scale 554-level R-matrix intermediate coupling frame transformation calculation that extends the scope and validity of earlier JAJOM calculations both in terms of the atomic structure and scattering cross sections. Our results provide a comprehensive electron-impact excitation data set for all transitions to higher n-shells. The fundamental atomic data for this O-like ion are subsequently used within a collisional radiative framework to provide the intensity line ratios across a range of electron temperatures and densities of interest in astrophysical observations.

  13. CTGF increases matrix metalloproteinases expression and subsequently promotes tumor metastasis in human osteosarcoma through down-regulating miR-519d.

    Science.gov (United States)

    Tsai, Hsiao-Chi; Su, Hong-Lin; Huang, Chun-Yin; Fong, Yi-Chin; Hsu, Chin-Jung; Tang, Chih-Hsin

    2014-06-15

    Osteosarcoma, the most common primary malignant bone tumor, shows potent capacity for local invasion and distant metastasis. Connective tissue growth factor (CTGF/CCN2), a secreted protein, binds to integrins, modulates invasive behavior of certain human cancer cells. Effect of CTGF in metastasis of human osteosarcoma is unknown. We found overexpression of CTGF increasing matrix metalloproteinases (MMPs)-2 and MMP-3 expression as well as promoting cell migration. MicroRNA (miRNA) analysis of CTGF-overexpressed osteosarcoma versus control cells probed mechanisms of CTGF-mediated promotion of migration. Among miRNAs regulated by CTGF, miR-519d was most downregulated after CTGF treatment. Co-transfection with miR-519d mimic reversed CTGF-mediated MMPs expression and cell migration. Also, MEK and ERK inhibitors or mutants reduced CTGF-increased cell migration and miR-519d suppression. By contrast, knockdown of CTGF diminished lung metastasis in vivo. Clinical samples indicate CTGF expression as linked with clinical stage and tumor metastasis. Taken together, data show CTGF elevating MMPs expression and subsequently promoting tumor metastasis in human osteosarcoma, down-regulating miR-519d via MEK and ERK pathways, making CTGF a new molecular therapeutic target in osteosarcoma metastasis.

  14. CTGF increases matrix metalloproteinases expression and subsequently promotes tumor metastasis in human osteosarcoma through down-regulating miR-519d

    Science.gov (United States)

    Tsai, Hsiao-Chi; Su, Hong-Lin; Huang, Chun-Yin; Fong, Yi-Chin; Hsu, Chin-Jung; Tang, Chih-Hsin

    2014-01-01

    Osteosarcoma, the most common primary malignant bone tumor, shows potent capacity for local invasion and distant metastasis. Connective tissue growth factor (CTGF/CCN2), a secreted protein, binds to integrins, modulates invasive behavior of certain human cancer cells. Effect of CTGF in metastasis of human osteosarcoma is unknown. We found overexpression of CTGF increasing matrix metalloproteinases (MMPs)-2 and MMP-3 expression as well as promoting cell migration. MicroRNA (miRNA) analysis of CTGF-overexpressed osteosarcoma versus control cells probed mechanisms of CTGF-mediated promotion of migration. Among miRNAs regulated by CTGF, miR-519d was most downregulated after CTGF treatment. Co-transfection with miR-519d mimic reversed CTGF-mediated MMPs expression and cell migration. Also, MEK and ERK inhibitors or mutants reduced CTGF-increased cell migration and miR-519d suppression. By contrast, knockdown of CTGF diminished lung metastasis in vivo. Clinical samples indicate CTGF expression as linked with clinical stage and tumor metastasis. Taken together, data show CTGF elevating MMPs expression and subsequently promoting tumor metastasis in human osteosarcoma, down-regulating miR-519d via MEK and ERK pathways, making CTGF a new molecular therapeutic target in osteosarcoma metastasis. PMID:25003330

  15. On moduli space of symmetric orthogonal matrices and exclusive Racah matrix S bar for representation R = [3,1] with multiplicities

    Science.gov (United States)

    Morozov, A.

    2017-03-01

    Racah matrices and higher j-symbols are used in description of braiding properties of conformal blocks and in construction of knot polynomials. However, in complicated cases the logic is actually inverted: they are much better deduced from these applications than from the basic representation theory. Following the recent proposal of [1] we obtain the exclusive Racah matrix S bar for the currently-front-line case of representation R = [ 3 , 1 ] with non-trivial multiplicities, where it is actually operator-valued, i.e. depends on the choice of bases in the intertwiner spaces. Effective field theory for arborescent knots in this case possesses gauge invariance, which is not yet properly described and understood. Because of this lack of knowledge a big part (about a half) of S bar needs to be reconstructed from orthogonality conditions. Therefore we discuss the abundance of symmetric orthogonal matrices, to which S bar belongs, and explain that dimension of their moduli space is also about a half of that for the ordinary orthogonal matrices. Thus the knowledge approximately matches the freedom and this explains why the method can work - with some limited addition of educated guesses. A similar calculation for R = [ r , 1 ] for r > 3 should also be doable.

  16. Matrix metalloproteinase-1 induction by diethyldithiocarbamate is regulated via Akt and ERK/miR222/ETS-1 pathways in hepatic stellate cells.

    Science.gov (United States)

    Liu, Tianhui; Wang, Ping; Cong, Min; Zhang, Dong; Liu, Lin; Li, Hongyi; Zhai, Qingling; Li, Zhuo; Jia, Jidong; You, Hong

    2016-08-01

    Matrix metalloproteinase-1 (MMP-1) plays an important role in fibrolysis by degrading excessively deposited collagen I and III. We previously demonstrated that diethyldithiocarbamate (DDC) up-regulates MMP-1 in hepatic stellate cells via the ERK1/2 and Akt signalling pathways. In the current study, we attempted to further explore the molecular mechanisms involved in the regulation of MMP-1. We treated a co-cultured system that included hepatocytes (C3A) and hepatic stellate cells (LX-2) with DDC. The data revealed that the transcriptional factor ETS-1, which is an important regulator of MMP-1, was up-regulated in LX-2 cells following DDC treatment. Furthermore, the up-regulation of MMP-1 by DDC has been abrogated through employing si-ETS-1 to block expression of ETS-1. We found that DDC significantly inhibited the expression of miR-222 in LX-2 cells. We transfected miR-222 mimic into LX-2 cells and then co-cultured the cells with C3A. The up-regulation of ETS-1 and MMP-1 in LX-2 cells treated with DDC were inhibited after miR-222 mimic transfection. These data indicate that DDC up-regulated MMP-1 in LX-2 cells through the miR-222/ETS-1 pathway. Finally, we treated the co-cultured system with an Akt inhibitor (T3830) and an ERK1/2 inhibitor (U0126). Both T3830 and U0126 blocked the suppression of miR-222 by DDC in LX-2. Collectively, these data indicate that DDC up-regulated MMP-1 in LX-2 cells through the Akt and ERK/miR-222/ETS-1 pathways. Our study provides experimental data that will aid the control of the process of fibrolysis in liver fibrosis prevention and treatment. © 2016 The Author(s).

  17. Angiotensin II increases matrix metalloproteinase 2 expression in human aortic smooth muscle cells via AT1R and ERK1/2.

    Science.gov (United States)

    Wang, Chunmao; Qian, Xiangyang; Sun, Xiaogang; Chang, Qian

    2015-12-01

    Increased levels of angiotensin II (Ang II) and activated matrix metalloproteinase 2 (MMP-2) produced by human aortic smooth muscle cells (human ASMCs) have recently been implicated in the pathogenesis of thoracic aortic aneurysm (TAA). Additionally, angiotensin II type 1 receptor (AT1R)-mediated extracellular signal-regulated kinase (ERK)1/2 activation contributes to TAA development in Marfan Syndrome. However, there is scant data regarding the relationship between Ang II and MMP-2 expression in human ASMCs. Therefore, we investigated the effect of Ang II on MMP-2 expression in human ASMCs and used Western blotting to identify the Ang II receptors and intracellular signaling pathways involved. Reverse transcription polymerase chain reaction (RT-PCR) and immunofluorescence data demonstrated that Ang II receptors were expressed on human ASMCs. Additionally, Ang II increased the expression of Ang II type 2 receptor (AT2R) but not AT1R at both the transcriptional and translational levels. Furthermore, Western blotting showed that Ang II increased MMP-2 expression in human ASMCs in a dose- and time-dependent manner. This response was completely inhibited by the AT1R inhibitor candesartan but not by the AT2R blocker PD123319. In addition, Ang II-induced upregulation of MMP-2 was mediated by the activation of ERK1/2, whereas p38 mitogen-activated protein kinase (p38 MAPK) and c-Jun N-terminal kinase (JNK) had no effect on this process. In conclusion, these results indicate that Ang II can increase the expression of MMP-2 via AT1 receptor and ERK1/2 signaling pathways in human ASMCs and suggest that antagonists of AT1R and ERK1/2 may be useful for treating TAAs.

  18. Adiabatic potential energy curves of long-range Rydberg molecules: Two-electron R-matrix approach

    CERN Document Server

    Tarana, Michal

    2016-01-01

    We introduce a computational method developed for study of long-range molecular Rydberg states of such systems that can be approximated by two electrons in a model potential of the atomic cores. Only diatomic molecules are considered. The method is based on a two-electron \\rmath approach inside a sphere centered on one of the atoms. The wave function is then connected to a Coulomb region outside the sphere via multichannel version of the Coulomb Green's function. This approach is put into a test by its application to a study of Rydberg states of the hydrogen molecule for internuclear distances $R$ from 20 to 400 bohrs and energies corresponding to $n$ from 3 to 22. The results are compared with previous quantum chemical calculations (lower quantum numbers $n$) and computations based on contact potential models (higher quantum numbers $n$).

  19. R-MATRIX RESONANCE ANALYSIS AND STATISTICAL PROPERTIES OF THE RESONANCE PARAMETERS OF 233U IN THE NEUTRON ENERGY RANGE FROM THERMAL TO 600 eV

    Energy Technology Data Exchange (ETDEWEB)

    Leal, L.C.

    2001-02-27

    The R-matrix resonance analysis of experimental neutron transmission and cross sections of {sup 233}U, with the Reich-Moore Bayesian code SAMMY, was extended up to the neutron energy of 600 eV by taking advantage of new high resolution neutron transmission and fission cross section measurements performed at the Oak Ridge Electron Linear Accelerator (ORELA). The experimental data base is described. In addition to the microscopic data (time-of-flight measurements of transmission and cross sections), some experimental and evaluated integral quantities were included in the data base. Tabulated and graphical comparisons between the experimental data and the SAMMY calculated cross sections are given. The ability of the calculated cross sections to reproduce the effective multiplication factors k{sub eff} for various thermal, intermediate, and fast systems was tested. The statistical properties of the resonance parameters were examined and recommended values of the average s-wave resonance parameters are given.

  20. Updated User's Guide for Sammy: Multilevel R-Matrix Fits to Neutron Data Using Bayes' Equations

    Energy Technology Data Exchange (ETDEWEB)

    Larson, Nancy M [ORNL

    2008-10-01

    In 1980 the multilevel multichannel R-matrix code SAMMY was released for use in analysis of neutron-induced cross section data at the Oak Ridge Electron Linear Accelerator. Since that time, SAMMY has evolved to the point where it is now in use around the world for analysis of many different types of data. SAMMY is not limited to incident neutrons but can also be used for incident protons, alpha particles, or other charged particles; likewise, Coulomb exit hannels can be included. Corrections for a wide variety of experimental conditions are available in the code: Doppler and resolution broadening, multiple-scattering corrections for capture or reaction yields, normalizations and backgrounds, to name but a few. The fitting procedure is Bayes' method, and data and parameter covariance matrices are properly treated within the code. Pre- and post-processing capabilities are also available, including (but not limited to) connections with the Evaluated Nuclear Data Files. Though originally designed for use in the resolved resonance region, SAMMY also includes a treatment for data analysis in the unresolved resonance region.

  1. R-matrix calculation of integral and differential cross sections for low-energy electron impact excitations of N2 molecule

    CERN Document Server

    Tashiro, M; Morokuma, Keiji; Tashiro, Motomichi

    2006-01-01

    Low-energy electron impact excitations of N$_2$ molecules are studied using the fixed-bond R-matrix method based on state-averaged complete active space SCF orbitals. Thirteen target electronic states of N$_2$ are included in the model within a valence configuration interaction representations of the target states. Integrated as well as differential cross sections of the $A^{3} \\Sigma_{u}^{+}$, $B^{3} \\Pi_{g}$, $W^{3} \\Delta_{u}$, ${B'}^{3} \\Sigma_{u}^{-}$, ${a'}^{1} \\Sigma_{u}^{-}$, $a^{1} \\Pi_{g}$, $w^{1} \\Delta_{u}$ and $C^{3} \\Pi_{u}$ states are calculated and compared with the previous experimental measurements. These excitations, especially of the higher four states, have not been studied enough theoretically in the previous literature. In general, good agreements are observed both in the integrated and differential cross sections. However, some discrepancies are seen in the integrated cross sections of the $A^{3} \\Sigma_{u}^{+}$ and $C^{3} \\Pi_{u}$ states, especially around a peak structure.

  2. R-matrix calculation of differential cross sections for low-energy electron collisions with ground and electronically excited state O2 molecules

    CERN Document Server

    Tashiro, M; Tennyson, J; Tashiro, Motomichi; Morokuma, Keiji; Tennyson, Jonathan

    2006-01-01

    Differential cross sections for electron collisions with the O$_2$ molecule in its ground ${X}^{3}\\Sigma_g^-$ state, as well as excited ${a}^{1}\\Delta_g$ and ${b}^{1}\\Sigma_g^+$ states are calculated. As previously, the fixed-bond R-matrix method based on state-averaged complete active space SCF orbitals is employed. In additions to elastic scattering of electron with the O$_2$ ${X}^{3}\\Sigma_g^-$, ${a}^{1}\\Delta_g$ and ${b}^{1}\\Sigma_g^+$ states, electron impact excitation from the ${X}^{3}\\Sigma_g^-$ state to the ${a}^{1}\\Delta_g$ and ${b}^{1}\\Sigma_g^+$ states as well as '6 eV states' of ${c}^{1}\\Sigma_u^{-}$, ${A'}^{3}\\Delta_u$ and ${A}^{3}\\Sigma_u^{+}$ states is studied. Differential cross sections for excitation to the '6 eV states' have not been calculated previously. Electron impact excitation to the ${b}^{1}\\Sigma_g^+$ state from the metastable ${a}^{1}\\Delta_g$ state is also studied. For electron impact excitation from the O$_2$ ${X}^{3}\\Sigma_g^-$ state to the ${b}^{1}\\Sigma_g^+$ state, our results...

  3. R-matrix analysis of {sup 235}U neutron transmission and cross sections in the energy range 0 to 2.25 keV

    Energy Technology Data Exchange (ETDEWEB)

    Leal, L.C.; Derrien, H.; Larson, N.M.; Wright, R.Q.

    1997-11-01

    This document describes a new R-matrix analysis of {sup 235}U cross section data in the energy range from 0 to 2,250 eV. The analysis was performed with the computer code SAMMY, that has recently been updated to permit, for the first time, inclusion of both differential and integral data within the analysis process. Fourteen differential data sets and six integral quantities were used in this evaluation: two measurements of fission plus capture, one of fission plus absorption, six of fission alone, two of transmission, and one of eta, plus standard values of thermal cross sections for fission, capture, and scattering, and of K1 and the Westcott g-factors for both fission and absorption. An excellent representation was obtained for the high-resolution transmission, fission, and capture cross-section data as well as for the integral quantities. The result is a single set of resonance parameters spanning the entire range up to 2,250 eV, a decided improvement over the present ENDF/VI evaluation, in which eleven discrete resonance parameter sets are required to cover that same energy range. This new evaluation is expected to greatly improve predictability of the criticality safety margins for nuclear systems in which {sup 235}U is present.

  4. Differentiation of clinically relevant Mucorales Rhizopus microsporus and R. arrhizus by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS).

    Science.gov (United States)

    Dolatabadi, Somayeh; Kolecka, Anna; Versteeg, Matthijs; de Hoog, Sybren G; Boekhout, Teun

    2015-07-01

    This study addresses the usefulness of matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) MS for reliable identification of the two most frequently occurring clinical species of Rhizopus, namely Rhizopus arrhizus with its two varieties, arrhizus and delemar, and Rhizopus microsporus. The test-set comprised 38 isolates of clinical and environmental origin previously identified by internal transcribed spacer (ITS) sequencing of rDNA. Multi-locus sequence data targeting three gene markers (ITS, ACT, TEF ) showed two monophylic clades for Rhizopus arrhizus and Rhizopus microsporus (bootstrap values of 99 %). Cluster analysis confirmed the presence of two distinct clades within Rhizopus arrhizus representing its varieties arrhizus and delemar. The MALDI Biotyper 3.0 Microflex LT platform (Bruker Daltonics) was used to confirm the distinction between Rhizopus arrhizus and Rhizopus microsporus and the presence of two varieties within the species Rhizopus arrhizus. An in-house database of 30 reference main spectra (MSPs) was initially tested for correctness using commercially available databases of Bruker Daltonics. By challenging the database with the same strains of which an in-house database was created, automatic identification runs confirmed that MALDI-TOF MS is able to recognize the strains at the variety level. Based on principal component analysis, two MSP dendrograms were created and showed concordance with the multi-locus tree; thus, MALDI-TOF MS is a useful tool for diagnostics of mucoralean species.

  5. On (R, S)-symmetric matrix solutions of left and right inverse eigenvalue problem and its corresponding best approximation problem%左右逆特征值问题及其最佳逼近问题的(R,S)对称矩阵解

    Institute of Scientific and Technical Information of China (English)

    尹凤; 黄光鑫

    2012-01-01

    Let R∈Cm×m" andSeCm×n be two nontrivial involutions, i.e. , R=R-1≠±Im and S = S-1≠ ± /zl. A matrix A∈Cm×n is called (R, S)-symmetric matrix if A is satisfactory to RAS = A. This paper first gives the solvable conditions and the general expressions of the (R, S) -symmetric solutions for the left and right inverse eigenvalue problem. Then, the corresponding best approximation problem to the ieft and right inverse eigenvalue problem is also solved over (R, S)-symmetric matrix solution.%令R∈Cm×m和S∈Cn×n是2个非平凡卷积矩阵,即R=R-1≠±Im且S=S-1≠±In.如果一个矩阵A∈Cm×n满足RAS-A,则矩阵A称为(R,S)对称矩阵.本文首先分别给出了左右逆特征值问题的(R,S)对称矩阵解的可解条件和一般表达式;然后,给出了左右逆特征值问题相应的最佳逼近问题的(R,S)对称矩阵解.

  6. Uncertainty analyses in the resolved resonance region of {sup 235}U, {sup 238}U, and {sup 239}Pu with the Reich-Moore R-matrix theory for JENDL-3.2

    Energy Technology Data Exchange (ETDEWEB)

    Kawano, Toshihiko [Kyushu University, Interdisciplinary Graduate School of Engineering Sciences, Kasuga, Fukuoka (Japan); Shibata, Keiichi [Japan Atomic Energy Research Inst., Tokai, Ibaraki (Japan). Tokai Research Establishment

    2002-08-01

    A simple method to estimate covariances for resolved resonance parameters was developed. Although a large number of resolved resonances are observed for major actinides, uncertainties in averaged cross sections are more important than those in resonance parameters in reactor calculations. The method developed here derives a covariance matrix for the resolved resonance parameters which gives an appropriate uncertainty of the averaged cross sections. The method was adopted to evaluate the covariance data for {sup 235}U, {sup 238}U, and {sup 239}Pu resonance parameters in JENDL-3.2, with the Reich-Moore R-matrix formula. (author)

  7. SEPARATION AND CHARACTERIZATION OF TETROL METABOLITES OF BENZO[A]PYRENE-DNA ADDUCTS USING HPLC AND SOLID-MATRIX ROOM TEMPERATURE LUMINESCENCE. (R824100)

    Science.gov (United States)

    AbstractFour tetrols of benzo[a]pyrene-DNA adducts were separated using reversed-phase high performance liquid chromatography. Chromatographic fractions containing a given tetrol were readily characterized with solid-matrix room temperature luminescence techniques. So...

  8. Reduced Google matrix

    CERN Document Server

    Frahm, K M

    2016-01-01

    Using parallels with the quantum scattering theory, developed for processes in nuclear and mesoscopic physics and quantum chaos, we construct a reduced Google matrix $G_R$ which describes the properties and interactions of a certain subset of selected nodes belonging to a much larger directed network. The matrix $G_R$ takes into account effective interactions between subset nodes by all their indirect links via the whole network. We argue that this approach gives new possibilities to analyze effective interactions in a group of nodes embedded in a large directed networks. Possible efficient numerical methods for the practical computation of $G_R$ are also described.

  9. Matrix theory

    CERN Document Server

    Franklin, Joel N

    2003-01-01

    Mathematically rigorous introduction covers vector and matrix norms, the condition-number of a matrix, positive and irreducible matrices, much more. Only elementary algebra and calculus required. Includes problem-solving exercises. 1968 edition.

  10. Upregulation of miR-328 and inhibition of CREB-DNA-binding activity are critical for resveratrol-mediated suppression of matrix metalloproteinase-2 and subsequent metastatic ability in human osteosarcomas

    Science.gov (United States)

    Tan, Peng; Tang, Chih-Hsin; Hsiao, Michael; Hsieh, Feng-Koo; Chien, Ming-Hsien

    2015-01-01

    Osteosarcomas, the most common malignant bone tumors, show a potent capacity for local invasion and pulmonary metastasis. Resveratrol (RESV), a phytochemical, exhibits multiple tumor-suppressing activities and has been tested in clinical trials. However, the antitumor activities of RESV in osteosarcomas are not yet completely defined. In osteosarcoma cells, we found that RESV inhibited the migration/invasion in vitro and lung metastasis in vivo by suppressing matrix metalloproteinase (MMP)-2. We identified that RESV exhibited a transcriptional inhibitory effect on MMP-2 through reducing CREB-DNA-binding activity. Moreover, a microRNA (miR) analysis showed that miR-328 was predominantly upregulated after RESV treatment. Inhibition of miR-328 significantly relieved MMP-2 and motility suppression imposed by RESV treatment. Furthermore, ectopic miR-328 expression in highly invasive cells decreased MMP-2 expression and invasive abilities. Mechanistic investigations found that JNK and p38 MAPK signaling pathways were involved in RESV-regulated CREB-DNA-binding activity, miR328 expression, and cell motility. Clinical samples indicated inverse expression between MMP-2 and miR-328 in normal bone and osteosarcoma tissues. The inverse correlation of MMP-2 and miR-328 was also observed in tumor specimens, and MMP-2 expression was linked to tumor metastasis. Taken together, our results provide new insights into the role of RESV-induced molecular and epigenetic regulation in suppressing tumor metastasis. PMID:25605016

  11. On Skew Triangular Matrix Rings

    Institute of Scientific and Technical Information of China (English)

    Wang Wei-liang; Wang Yao; Ren Yan-li

    2016-01-01

    Letαbe a nonzero endomorphism of a ring R, n be a positive integer and Tn(R,α) be the skew triangular matrix ring. We show that some properties related to nilpotent elements of R are inherited by Tn(R,α). Meanwhile, we determine the strongly prime radical, generalized prime radical and Behrens radical of the ring R[x;α]/(xn), where R[x;α] is the skew polynomial ring.

  12. Mice deficient for the extracellular matrix glycoprotein tenascin-r show physiological and structural hallmarks of increased hippocampal excitability, but no increased susceptibility to seizures in the pilocarpine model of epilepsy.

    Science.gov (United States)

    Brenneke, F; Bukalo, O; Dityatev, A; Lie, A A

    2004-01-01

    Recognition molecules provide important cues for neuronal survival, axonal fasciculation, axonal pathfinding, synaptogenesis, synaptic plasticity, and regeneration. Our previous studies revealed a link between perisomatic inhibition and the extracellular matrix glycoprotein tenascin-R (TN-R). Therefore, we here studied neuronal excitability and epileptic susceptibility in mice constitutively deficient in TN-R. In vitro analysis of populational spikes in hippocampal slices of TN-R-deficient mice revealed a significant increase in multiple spikes in the CA1 region, as compared with wild-type mice. This difference between genotypes was only partially reduced after blockade of GABA(A) receptors with picrotoxin, indicating a deficit in GABAergic inhibition and an increase in intrinsic excitability of CA1 pyramidal cells in TN-R-deficient mice. Using a battery of immunohistochemical markers and histological stainings, we were able to identify two abnormalities in the hippocampus of TN-R-deficient mice possibly related to increased excitability: the high number of glial fibrillary acidic protein-positive astrocytes and low number of calretinin-positive interneurons in the CA1 and CA3 regions. In order to test whether the revealed abnormalities give rise to increased susceptibility to seizures in TN-R-deficient mice, we used the pilocarpine model of epilepsy. No genotype-specific differences were found with regard to the time-course of pilocarpine-induced and spontaneous seizures, neuronal cell loss, aberrant sprouting and distribution of synaptic and inhibitory interneuron markers. However, pilocarpine-induced astrogliosis and reduction in calretinin-positive interneurons were less pronounced in TN-R mutants, thereby resulting in an occlusion of effects induced by TN-R deficiency and pilocarpine. Thus, TN-R-deficient mutants show several electrophysiological and morphological hallmarks of increased neuronal excitability, which, however, do not give rise to more

  13. Improved Matrix Uncertainty Selector

    CERN Document Server

    Rosenbaum, Mathieu

    2011-01-01

    We consider the regression model with observation error in the design: y=X\\theta* + e, Z=X+N. Here the random vector y in R^n and the random n*p matrix Z are observed, the n*p matrix X is unknown, N is an n*p random noise matrix, e in R^n is a random noise vector, and \\theta* is a vector of unknown parameters to be estimated. We consider the setting where the dimension p can be much larger than the sample size n and \\theta* is sparse. Because of the presence of the noise matrix N, the commonly used Lasso and Dantzig selector are unstable. An alternative procedure called the Matrix Uncertainty (MU) selector has been proposed in Rosenbaum and Tsybakov (2010) in order to account for the noise. The properties of the MU selector have been studied in Rosenbaum and Tsybakov (2010) for sparse \\theta* under the assumption that the noise matrix N is deterministic and its values are small. In this paper, we propose a modification of the MU selector when N is a random matrix with zero-mean entries having the variances th...

  14. The MicroRNA miR-199a-5p Down-regulation Switches on Wound Angiogenesis by Derepressing the v-ets Erythroblastosis Virus E26 Oncogene Homolog 1-Matrix Metalloproteinase-1 Pathway*

    Science.gov (United States)

    Chan, Yuk Cheung; Roy, Sashwati; Huang, Yue; Khanna, Savita; Sen, Chandan K.

    2012-01-01

    miR-199a-5p plays a critical role in controlling cardiomyocyte survival. However, its significance in endothelial cell biology remains ambiguous. Here, we report the first evidence that miR-199a-5p negatively regulates angiogenic responses by directly targeting v-ets erythroblastosis virus E26 oncogene homolog 1 (Ets-1). Induction of miR-199a-5p in human dermal microvascular endothelial cells (HMECs) blocked angiogenic response in Matrigel® culture, whereas miR-199a-5p-deprived cells exhibited enhanced angiogenesis in vitro. Bioinformatics prediction and miR target reporter assay recognized Ets-1 as a novel direct target of miR-199a-5p. Delivery of miR-199a-5p blocked Ets-1 expression in HMECs, whereas knockdown endogenous miR-199a-5p induced Ets-1 expression. Matrix metalloproteinase 1 (MMP-1), one of the Ets-1 downstream mediators, was negatively regulated by miR-199a-5p. Overexpression of Ets-1 not only rescued miR-199a-5p-dependent anti-angiogenic effects but also reversed miR-199a-5p-induced loss of MMP-1 expression. Similarly, Ets-1 knockdown blunted angiogenic response and induction of MMP-1 in miR-199a-5p-deprived HMECs. Examination of cutaneous wound dermal tissue revealed a significant down-regulation of miR-199a-5p expression, which was associated with induction of Ets-1 and MMP-1. Mice carrying homozygous deletions in the Ets-1 gene exhibited blunted wound blood flow and reduced abundance of endothelial cells. Impaired wound angiogenesis was associated with compromised wound closure, insufficient granulation tissue formation, and blunted induction of MMP-1. Thus, down-regulation of miR-199a-5p is involved in the induction of wound angiogenesis through derepressing of the Ets-1-MMP1 pathway. PMID:23060436

  15. On the Role of Processing Parameters in Producing Recycled Aluminum AA6061 Based Metal Matrix Composite (MMC-AlR) Prepared Using Hot Press Forging (HPF) Process

    Science.gov (United States)

    Ahmad, Azlan; Lajis, Mohd Amri

    2017-01-01

    Solid-state recycling, which involves the direct recycling of scrap metal into bulk material using severe plastic deformation, has emerged as a potential alternative to the conventional remelting and recycling techniques. Hot press forging has been identified as a sustainable direct recycling technique that has fewer steps and maintains excellent material performance. An experimental investigation was conducted to explore the hardness and density of a recycled aluminum-based metal matrix composite by varying operating temperature and holding time. A mixture of recycled aluminum, AA6061, and aluminum oxide were simultaneously heated to 430, 480, and 530 °C and forged for 60, 90, and 120 min. We found a positive increase in microhardness and density for all composites. The hardness increased approximately 33.85%, while density improved by about 15.25% whenever the temperature or the holding time were increased. Based on qualitative analysis, the composite endures substantial plastic deformation due to the presence of hardness properties due to the aluminum oxide embedded in the aluminum matrix. These increases were significantly affected by the operating temperature; the holding time also had a subordinate role in enhancing the metal matrix composite properties. Furthermore, in an effort to curb the shortage of primary resources, this study reviewed the promising performance of secondary resources produced by using recycled aluminum and aluminum oxide as the base matrix and reinforcement constituent, respectively. This study is an outline for machining practitioners and the manufacturing industry to help increase industry sustainability with the aim of preserving the Earth for our community in the future. PMID:28925963

  16. Electron impact excitation of N$^{3+}$ using the B-spline R-matrix method: Limitations due to the target structure description and the size of the close-coupling expansion

    CERN Document Server

    Fernández-Menchero, L; Bartschat, K

    2016-01-01

    There are major discrepancies between recent ICFT (Intermediate Coupling Frame Transformation) and DARC (Dirac Atomic R-matrix Code) calculations (Fern\\'andez-Menchero et al. 2014, Astron. Astroph. 566 A104, Aggarwal et al. 2016 Mon. Not. R Astr. Soc. 461 3997) regarding electron impact excitation rates for transitions in several Be-like ions, as well as claims that DARC calculations are much more accurate and the ICFT results might even be wrong. To resolve possible reasons for these discrepancies and to estimate the accuracy of the various results, we carried out independent B-Spline R-Matrix (BSR) calculations for electron-impact excitation of the Be-like ion N$^{3+}$. Our close-coupling expansions contain the same target states (238 levels overall) as the previous ICFT and DARC calculations, but the representation of the target wave functions is completely different. We find close agreement among all calculations for the strong transitions between low-lying states, whereas there remain serious discrepanci...

  17. The Oncogenic Response to MiR-335 Is Associated with Cell Surface Expression of Membrane-Type 1 Matrix Metalloproteinase (MT1-MMP) Activity.

    Science.gov (United States)

    Rojas, Fausto; Hernandez, Maria E; Silva, Milagros; Li, Lihua; Subramanian, Subbaya; Wilson, Michael J; Liu, Ping

    2015-01-01

    MicroRNA miR-335 has been reported to have both tumor suppressor and oncogenic activities. In order to determine possible tissue and cell type differences in response to miR-335, we examined the effect of miR-335 on cell expression of MT1-MMP, a proteinase commonly expressed in tumors and associated with cell proliferation and migration. miR-335 increased cell surface expression of MT1-MMP in fibrosarcoma HT-1080 and benign prostate BPH-1 cells, but not in prostate LNCaP or breast MCF-7 tumor cells. miR-335 stimulated proliferation and cell migration in a wound healing in vitro assay in HT-1080, BPH-1, and U87 glioblastoma cells, cells which demonstrated significant cell surface expression of MT1-MMP. In contrast, miR-335 did not affect proliferation or migration in cells without a prominent plasma membrane associated MT1-MMP activity. Our data suggest that differences in response to miR-335 by tumor cells may lie in part in the mechanism of regulation of MT1-MMP production.

  18. The Oncogenic Response to MiR-335 Is Associated with Cell Surface Expression of Membrane-Type 1 Matrix Metalloproteinase (MT1-MMP Activity.

    Directory of Open Access Journals (Sweden)

    Fausto Rojas

    Full Text Available MicroRNA miR-335 has been reported to have both tumor suppressor and oncogenic activities. In order to determine possible tissue and cell type differences in response to miR-335, we examined the effect of miR-335 on cell expression of MT1-MMP, a proteinase commonly expressed in tumors and associated with cell proliferation and migration. miR-335 increased cell surface expression of MT1-MMP in fibrosarcoma HT-1080 and benign prostate BPH-1 cells, but not in prostate LNCaP or breast MCF-7 tumor cells. miR-335 stimulated proliferation and cell migration in a wound healing in vitro assay in HT-1080, BPH-1, and U87 glioblastoma cells, cells which demonstrated significant cell surface expression of MT1-MMP. In contrast, miR-335 did not affect proliferation or migration in cells without a prominent plasma membrane associated MT1-MMP activity. Our data suggest that differences in response to miR-335 by tumor cells may lie in part in the mechanism of regulation of MT1-MMP production.

  19. Matrix theory of gravitation

    CERN Document Server

    Koehler, Wolfgang

    2011-01-01

    A new classical theory of gravitation within the framework of general relativity is presented. It is based on a matrix formulation of four-dimensional Riemann-spaces and uses no artificial fields or adjustable parameters. The geometrical stress-energy tensor is derived from a matrix-trace Lagrangian, which is not equivalent to the curvature scalar R. To enable a direct comparison with the Einstein-theory a tetrad formalism is utilized, which shows similarities to teleparallel gravitation theories, but uses complex tetrads. Matrix theory might solve a 27-year-old, fundamental problem of those theories (sec. 4.1). For the standard test cases (PPN scheme, Schwarzschild-solution) no differences to the Einstein-theory are found. However, the matrix theory exhibits novel, interesting vacuum solutions.

  20. Matrix Factorization and Matrix Concentration

    OpenAIRE

    Mackey, Lester

    2012-01-01

    Motivated by the constrained factorization problems of sparse principal components analysis (PCA) for gene expression modeling, low-rank matrix completion for recommender systems, and robust matrix factorization for video surveillance, this dissertation explores the modeling, methodology, and theory of matrix factorization.We begin by exposing the theoretical and empirical shortcomings of standard deflation techniques for sparse PCA and developing alternative methodology more suitable for def...

  1. A Simple Expression for the Matrix Gradient of a Diagonal Element of R in QR Decomposition for Use in MIMO Communications and Signal Processing

    Science.gov (United States)

    2010-12-01

    est bien connu que n’importe quelle matrice A peut être décomposée, ou factorisée, puisque A = QR où Q est une matrice à colonnes ortho- normales...signal plus bruit A, il est intéressant de connaı̂tre les effets du bruit surQ etR . À cette fin, les gradients des élémentsQ etR par rapport àA

  2. Linearized supergravity from Matrix theory

    CERN Document Server

    Kabat, D; Kabat, Daniel; Taylor, Washington

    1998-01-01

    We show that the linearized supergravity potential between two objects arising from the exchange of quanta with zero longitudinal momentum is reproduced to all orders in 1/r by terms in the one-loop Matrix theory potential. The essential ingredient in the proof is the identification of the Matrix theory quantities corresponding to moments of the stress tensor and membrane current. We also point out that finite-N Matrix theory violates the Equivalence Principle.

  3. Matrix calculus

    CERN Document Server

    Bodewig, E

    1959-01-01

    Matrix Calculus, Second Revised and Enlarged Edition focuses on systematic calculation with the building blocks of a matrix and rows and columns, shunning the use of individual elements. The publication first offers information on vectors, matrices, further applications, measures of the magnitude of a matrix, and forms. The text then examines eigenvalues and exact solutions, including the characteristic equation, eigenrows, extremum properties of the eigenvalues, bounds for the eigenvalues, elementary divisors, and bounds for the determinant. The text ponders on approximate solutions, as well

  4. Electron impact excitation of N3+ using the B-spline R-matrix method: importance of the target structure description and the size of the close-coupling expansion

    Science.gov (United States)

    Fernández-Menchero, L.; Zatsarinny, O.; Bartschat, K.

    2017-03-01

    There are major discrepancies between recent intermediate coupling frame transformation (ICFT) and Dirac atomic R-matrix code (DARC) calculations (Fernández-Menchero et al 2014 Astron. Astrophys. 566 A104; Aggarwal et al 2016 Mon. Not. R. Astron. Soc. 461 3997) regarding electron-impact excitation rates for transitions in several Be-like ions, as well as claims that the DARC calculations are much more accurate and the ICFT results might even be wrong. To identify possible reasons for these discrepancies and to estimate the accuracy of the various results, we carried out independent B-spline R-matrix calculations for electron-impact excitation of the Be-like ion {{{N}}}3+. Our close-coupling (CC) expansions contain the same target states (238 levels overall) as the previous ICFT and DARC calculations, but the representation of the target wave functions is completely different. We find close agreement among all calculations for the strong transitions between low-lying states, whereas there remain serious discrepancies for the weak transitions as well as for transitions to highly excited states. The differences in the final results for the collision strengths are mainly due to differences in the structure description, specifically the inclusion of correlation effects, rather than the treatment of relativistic effects or problems with the validity of the three methods to describe the collision. Hence there is no indication that one approach is superior to another, until the convergence of both the target configuration and the CC expansions have been fully established.

  5. Little IIB Matrix Model

    CERN Document Server

    Kitazawa, Y; Saito, O; Kitazawa, Yoshihisa; Mizoguchi, Shun'ya; Saito, Osamu

    2006-01-01

    We study the zero-dimensional reduced model of D=6 pure super Yang-Mills theory and argue that the large N limit describes the (2,0) Little String Theory. The one-loop effective action shows that the force exerted between two diagonal blocks of matrices behaves as 1/r^4, implying a six-dimensional spacetime. We also observe that it is due to non-gravitational interactions. We construct wave functions and vertex operators which realize the D=6, (2,0) tensor representation. We also comment on other "little" analogues of the IIB matrix model and Matrix Theory with less supercharges.

  6. Matrix Models and Gravitational Corrections

    CERN Document Server

    Dijkgraaf, R; Temurhan, M; Dijkgraaf, Robbert; Sinkovics, Annamaria; Temurhan, Mine

    2002-01-01

    We provide evidence of the relation between supersymmetric gauge theories and matrix models beyond the planar limit. We compute gravitational R^2 couplings in gauge theories perturbatively, by summing genus one matrix model diagrams. These diagrams give the leading 1/N^2 corrections in the large N limit of the matrix model and can be related to twist field correlators in a collective conformal field theory. In the case of softly broken SU(N) N=2 super Yang-Mills theories, we find that these exact solutions of the matrix models agree with results obtained by topological field theory methods.

  7. Matrix Thermalization

    CERN Document Server

    Craps, Ben; Nguyen, Kévin

    2016-01-01

    Matrix quantum mechanics offers an attractive environment for discussing gravitational holography, in which both sides of the holographic duality are well-defined. Similarly to higher-dimensional implementations of holography, collapsing shell solutions in the gravitational bulk correspond in this setting to thermalization processes in the dual quantum mechanical theory. We construct an explicit, fully nonlinear supergravity solution describing a generic collapsing dilaton shell, specify the holographic renormalization prescriptions necessary for computing the relevant boundary observables, and apply them to evaluating thermalizing two-point correlation functions in the dual matrix theory.

  8. Species-Level Identification of Actinomyces Isolates Causing Invasive Infections: Multiyear Comparison of Vitek MS (Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry) to Partial Sequencing of the 16S rRNA Gene.

    Science.gov (United States)

    Lynch, T; Gregson, D; Church, D L

    2016-03-01

    Actinomyces species are uncommon but important causes of invasive infections. The ability of our regional clinical microbiology laboratory to report species-level identification of Actinomyces relied on molecular identification by partial sequencing of the 16S ribosomal gene prior to the implementation of the Vitek MS (matrix-assisted laser desorption ionization-time of flight mass spectrometry [MALDI-TOF MS]) system. We compared the use of the Vitek MS to that of 16S rRNA gene sequencing for reliable species-level identification of invasive infections caused by Actinomyces spp. because limited data had been published for this important genera. A total of 115 cases of Actinomyces spp., either alone or as part of a polymicrobial infection, were diagnosed between 2011 and 2014. Actinomyces spp. were considered the principal pathogen in bloodstream infections (n = 17, 15%), in skin and soft tissue abscesses (n = 25, 22%), and in pulmonary (n = 26, 23%), bone (n = 27, 23%), intraabdominal (n = 16, 14%), and central nervous system (n = 4, 3%) infections. Compared to sequencing and identification from the SmartGene Integrated Database Network System (IDNS), Vitek MS identified 47/115 (41%) isolates to the correct species and 10 (9%) isolates to the correct genus. However, the Vitek MS was unable to provide identification for 43 (37%) isolates while 15 (13%) had discordant results. Phylogenetic analyses of the 16S rRNA sequences demonstrate high diversity in recovered Actinomyces spp. and provide additional information to compare/confirm discordant identifications between MALDI-TOF and 16S rRNA gene sequences. This study highlights the diversity of clinically relevant Actinomyces spp. and provides an important typing comparison. Based on our analysis, 16S rRNA gene sequencing should be used to rapidly identify Actinomyces spp. until MALDI-TOF databases are optimized.

  9. Orthogonal Matrix-Valued Wavelet Packets

    Institute of Scientific and Technical Information of China (English)

    Qingjiang Chen; Cuiling Wang; Zhengxing Cheng

    2007-01-01

    In this paper,we introduce matrix-valued multiresolution analysis and matrixvalued wavelet packets. A procedure for the construction of the orthogonal matrix-valued wavelet packets is presented. The properties of the matrix-valued wavelet packets are investigated. In particular,a new orthonormal basis of L2(R,Cs×s) is obtained from the matrix-valued wavelet packets.

  10. Matrix inequalities

    CERN Document Server

    Zhan, Xingzhi

    2002-01-01

    The main purpose of this monograph is to report on recent developments in the field of matrix inequalities, with emphasis on useful techniques and ingenious ideas. Among other results this book contains the affirmative solutions of eight conjectures. Many theorems unify or sharpen previous inequalities. The author's aim is to streamline the ideas in the literature. The book can be read by research workers, graduate students and advanced undergraduates.

  11. Matrix analysis

    CERN Document Server

    Bhatia, Rajendra

    1997-01-01

    A good part of matrix theory is functional analytic in spirit. This statement can be turned around. There are many problems in operator theory, where most of the complexities and subtleties are present in the finite-dimensional case. My purpose in writing this book is to present a systematic treatment of methods that are useful in the study of such problems. This book is intended for use as a text for upper division and gradu­ ate courses. Courses based on parts of the material have been given by me at the Indian Statistical Institute and at the University of Toronto (in collaboration with Chandler Davis). The book should also be useful as a reference for research workers in linear algebra, operator theory, mathe­ matical physics and numerical analysis. A possible subtitle of this book could be Matrix Inequalities. A reader who works through the book should expect to become proficient in the art of deriving such inequalities. Other authors have compared this art to that of cutting diamonds. One first has to...

  12. Computing a Nonnegative Matrix Factorization -- Provably

    CERN Document Server

    Arora, Sanjeev; Kannan, Ravi; Moitra, Ankur

    2011-01-01

    In the Nonnegative Matrix Factorization (NMF) problem we are given an $n \\times m$ nonnegative matrix $M$ and an integer $r > 0$. Our goal is to express $M$ as $A W$ where $A$ and $W$ are nonnegative matrices of size $n \\times r$ and $r \\times m$ respectively. In some applications, it makes sense to ask instead for the product $AW$ to approximate $M$ -- i.e. (approximately) minimize $\

  13. Matrix pentagons

    CERN Document Server

    Belitsky, A V

    2016-01-01

    The Operator Product Expansion for null polygonal Wilson loop in planar maximally supersymmetric Yang-Mills theory runs systematically in terms of multiparticle pentagon transitions which encode the physics of excitations propagating on the color flux tube ending on the sides of the four-dimensional contour. Their dynamics was unravelled in the past several years and culminated in a complete description of pentagons as an exact function of the 't Hooft coupling. In this paper we provide a solution for the last building block in this program, the SU(4) matrix structure arising from internal symmetry indices of scalars and fermions. This is achieved by a recursive solution of the Mirror and Watson equations obeyed by the so-called singlet pentagons and fixing the form of the twisted component in their tensor decomposition. The non-singlet, or charged, pentagons are deduced from these by a limiting procedure.

  14. Riemann Zeta Matrix Function

    OpenAIRE

    Kargın, Levent; Kurt, Veli

    2015-01-01

    In this study, obtaining the matrix analog of the Euler's reflection formula for the classical gamma function we expand the domain of the gamma matrix function and give a infinite product expansion of sinπxP.  Furthermore we define Riemann zeta matrix function and evaluate some other matrix integrals. We prove a functional equation for Riemann zeta matrix function.

  15. QR factorization for row or column symmetric matrix

    Institute of Scientific and Technical Information of China (English)

    ZOU; Hongxing(邹红星); WANG; Dianjun(王殿军); DAI; Qionghai(戴琼海); LI; Yanda(李衍达)

    2003-01-01

    The problem of fast computing the QR factorization of row or column symmetric matrix isconsidered. We address two new algorithms based on a correspondence of Q and R matrices between the rowor column symmetric matrix and its mother matrix. Theoretical analysis and numerical evidence show that, fora class of row or column symmetric matrices, the QR factorization using the mother matrix rather than therow or column symmetric matrix per se can save dramatically the CPU time and memory without loss of anynumerical precision.

  16. Matrix Factorization for Evolution Data

    Directory of Open Access Journals (Sweden)

    Xiao-Yu Huang

    2014-01-01

    Full Text Available We study a matrix factorization problem, that is, to find two factor matrices U and V such that R≈UT×V, where R is a matrix composed of the values of the objects O1,O2,…,On at consecutive time points T1,T2,…,Tt. We first present MAFED, a constrained optimization model for this problem, which straightforwardly performs factorization on R. Then based on the interplay of the data in U, V, and R, a probabilistic graphical model using the same optimization objects is constructed, in which structural dependencies of the data in these matrices are revealed. Finally, we present a fitting algorithm to solve the proposed MAFED model, which produces the desired factorization. Empirical studies on real-world datasets demonstrate that our approach outperforms the state-of-the-art comparison algorithms.

  17. CDENPROP: Transition matrix elements involving continuum states

    CERN Document Server

    Harvey, Alex G; Morales, Felipe; Smirnova, Olga

    2014-01-01

    Transition matrix elements between electronic states where one electron can be in the continuum are required for a wide range of applications of the molecular R-matrix method. These include photoionization, photorecombination and photodetachment; electron-molecule scattering and photon-induced processes in the presence of an external D.C. field, and time-dependent R-matrix approaches to study the effect of the exposure of molecules to strong laser fields. We present a new algorithm, implemented as a module (CDENPROP) in the UKRmol electron-molecule scattering code suite.

  18. The matrix type of purely infinite simple Leavitt path algebras

    CERN Document Server

    Abrams, Gene

    2009-01-01

    Let $R$ denote the purely infinite simple unital Leavitt path algebra $L(E)$. We completely determine the pairs of positive integers $(c,d)$ for which there is an isomorphism of matrix rings $M_c(R)\\cong M_d(R)$, in terms of the order of $[1_R]$ in the Grothendieck group $K_0(R)$.

  19. Matrix Quantization of Turbulence

    CERN Document Server

    Floratos, Emmanuel

    2011-01-01

    Based on our recent work on Quantum Nambu Mechanics $\\cite{af2}$, we provide an explicit quantization of the Lorenz chaotic attractor through the introduction of Non-commutative phase space coordinates as Hermitian $ N \\times N $ matrices in $ R^{3}$. For the volume preserving part, they satisfy the commutation relations induced by one of the two Nambu Hamiltonians, the second one generating a unique time evolution. Dissipation is incorporated quantum mechanically in a self-consistent way having the correct classical limit without the introduction of external degrees of freedom. Due to its volume phase space contraction it violates the quantum commutation relations. We demonstrate that the Heisenberg-Nambu evolution equations for the Matrix Lorenz system develop fast decoherence to N independent Lorenz attractors. On the other hand there is a weak dissipation regime, where the quantum mechanical properties of the volume preserving non-dissipative sector survive for long times.

  20. Matrix anticirculant calculus

    Science.gov (United States)

    Dimiev, Stancho; Stoev, Peter; Stoilova, Stanislava

    2013-12-01

    The notion of anticirculant is ordinary of interest for specialists of general algebra (to see for instance [1]). In this paper we develop some aspects of anticirculants in real function theory. Denoting by X≔x0+jx1+⋯+jmxm, xk∈R, m+1 = 2n, and jk is the k-th degree of the matrix j = (0100...00010...00001...0..................-1000...0), we study the functional anticirculants f(X)≔f0(x0,x1,...,xm)+jf1(x0,x1,...,xm)+⋯+jm-1fm-1(x0,x1,...,xm)+jmfm(x0,x1,...,xm), where fk(x0,x1,...,xm) are smooth functions of 2n real variables. A continuation for complex function theory will appear.

  1. Algebraic matrix equations in two unknowns

    CERN Document Server

    Bourgeois, Gerald

    2011-01-01

    Let r1,r2,s1,s2 be integers such that gcd(r1,r2)=1 and gcd(s1,s2)=1. We solve the matrix equation A^{r1}B^{s1}A^{r2}B^{s2}=+-Identity where A,B are 2,2 complex matrices that have no common eigenvectors. Let p,q be coprime integers such that |p|+|q|>2. We study the matrix equation B^{-1}A^pB=A^q where A,B are n,n complex invertible matrices. We show that such matrices satisfy B^{-1}AB and A commute. We provide a necessary and sufficient condition for similarity of A^p and A^q. We explicitly solve this problem when A has n distinct eigenvalues and in other particular cases.

  2. The Matrix Cookbook

    DEFF Research Database (Denmark)

    Petersen, Kaare Brandt; Pedersen, Michael Syskind

    Matrix identities, relations and approximations. A desktop reference for quick overview of mathematics of matrices.......Matrix identities, relations and approximations. A desktop reference for quick overview of mathematics of matrices....

  3. Matrix with Prescribed Eigenvectors

    Science.gov (United States)

    Ahmad, Faiz

    2011-01-01

    It is a routine matter for undergraduates to find eigenvalues and eigenvectors of a given matrix. But the converse problem of finding a matrix with prescribed eigenvalues and eigenvectors is rarely discussed in elementary texts on linear algebra. This problem is related to the "spectral" decomposition of a matrix and has important technical…

  4. Extracellular matrix component signaling in cancer

    DEFF Research Database (Denmark)

    Multhaupt, Hinke A. B.; Leitinger, Birgit; Gullberg, Donald

    2016-01-01

    Cell responses to the extracellular matrix depend on specific signaling events. These are important from early development, through differentiation and tissue homeostasis, immune surveillance, and disease pathogenesis. Signaling not only regulates cell adhesion cytoskeletal organization and motil...... as well as matrix constitution and protein crosslinking. Here we summarize roles of the three major matrix receptor types, with emphasis on how they function in tumor progression. [on SciFinder(R)]......Cell responses to the extracellular matrix depend on specific signaling events. These are important from early development, through differentiation and tissue homeostasis, immune surveillance, and disease pathogenesis. Signaling not only regulates cell adhesion cytoskeletal organization...... and motility but also provides survival and proliferation cues. The major classes of cell surface receptors for matrix macromols. are the integrins, discoidin domain receptors, and transmembrane proteoglycans such as syndecans and CD44. Cells respond not only to specific ligands, such as collagen, fibronectin...

  5. Generalized companion matrix for approximate GCD

    CERN Document Server

    Boito, Paola

    2011-01-01

    We study a variant of the univariate approximate GCD problem, where the coe?- cients of one polynomial f(x)are known exactly, whereas the coe?cients of the second polynomial g(x)may be perturbed. Our approach relies on the properties of the matrix which describes the operator of multiplication by gin the quotient ring C[x]=(f). In particular, the structure of the null space of the multiplication matrix contains all the essential information about GCD(f; g). Moreover, the multiplication matrix exhibits a displacement structure that allows us to design a fast algorithm for approximate GCD computation with quadratic complexity w.r.t. polynomial degrees.

  6. Subspace decomposition-based correlation matrix multiplication

    Institute of Scientific and Technical Information of China (English)

    Cheng Hao; Guo Wei; Yu Jingdong

    2008-01-01

    The correlation matrix, which is widely used in eigenvalue decomposition (EVD) or singular value decomposition (SVD), usually can be denoted by R = E[yiy'i]. A novel method for constructing the correlation matrix R is proposed. The proposed algorithm can improve the resolving power of the signal eigenvalues and overcomes the shortcomings of the traditional subspace methods, which cannot be applied to low SNR. Then the proposed method is applied to the direct sequence spread spectrum (DSSS) signal's signature sequence estimation.The performance of the proposed algorithm is analyzed, and some illustrative simulation results are presented.

  7. Parallelism in matrix computations

    CERN Document Server

    Gallopoulos, Efstratios; Sameh, Ahmed H

    2016-01-01

    This book is primarily intended as a research monograph that could also be used in graduate courses for the design of parallel algorithms in matrix computations. It assumes general but not extensive knowledge of numerical linear algebra, parallel architectures, and parallel programming paradigms. The book consists of four parts: (I) Basics; (II) Dense and Special Matrix Computations; (III) Sparse Matrix Computations; and (IV) Matrix functions and characteristics. Part I deals with parallel programming paradigms and fundamental kernels, including reordering schemes for sparse matrices. Part II is devoted to dense matrix computations such as parallel algorithms for solving linear systems, linear least squares, the symmetric algebraic eigenvalue problem, and the singular-value decomposition. It also deals with the development of parallel algorithms for special linear systems such as banded ,Vandermonde ,Toeplitz ,and block Toeplitz systems. Part III addresses sparse matrix computations: (a) the development of pa...

  8. Phosphine in various matrixes

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    Matrix-bound phosphine was determined in the Jiaozhou Bay coastal sediment, in prawn-pond bottom soil, in the eutrophic lake Wulongtan, in the sewage sludge and in paddy soil as well. Results showed that matrix-bound phosphine levels in freshwater and coastal sediment, as well as in sewage sludge, are significantly higher than that in paddy soil. The correlation between matrix bound phosphine concentrations and organic phosphorus contents in sediment samples is discussed.

  9. Limit properties of monotone matrix functions

    NARCIS (Netherlands)

    Behrndt, Jussi; Hassi, Seppo; de Snoo, Henk; Wietsma, Rudi

    2012-01-01

    The basic objects in this paper are monotonically nondecreasing n x n matrix functions D(center dot) defined on some open interval l = (a, b) of R and their limit values D(a) and D(b) at the endpoints a and b which are, in general, selfadjoint relations in C-n. Certain space decompositions induced b

  10. Patience of matrix games

    DEFF Research Database (Denmark)

    Hansen, Kristoffer Arnsfelt; Ibsen-Jensen, Rasmus; Podolskii, Vladimir V.;

    2013-01-01

    For matrix games we study how small nonzero probability must be used in optimal strategies. We show that for image win–lose–draw games (i.e. image matrix games) nonzero probabilities smaller than image are never needed. We also construct an explicit image win–lose game such that the unique optimal...

  11. Patience of matrix games

    DEFF Research Database (Denmark)

    Hansen, Kristoffer Arnsfelt; Ibsen-Jensen, Rasmus; Podolskii, Vladimir V.

    2013-01-01

    For matrix games we study how small nonzero probability must be used in optimal strategies. We show that for image win–lose–draw games (i.e. image matrix games) nonzero probabilities smaller than image are never needed. We also construct an explicit image win–lose game such that the unique optimal...

  12. Transfer function matrix

    Science.gov (United States)

    Seraji, H.

    1987-01-01

    Given a multivariable system, it is proved that the numerator matrix N(s) of the transfer function evaluated at any system pole either has unity rank or is a null matrix. It is also shown that N(s) evaluated at any transmission zero of the system has rank deficiency. Examples are given for illustration.

  13. Using Matrix-Assisted Laser Desorption Ionization-Time of Flight (MALDI-TOF) Complemented with Selected 16S rRNA and gyrB Genes Sequencing to Practically Identify Clinical Important Viridans Group Streptococci (VGS).

    Science.gov (United States)

    Zhou, Menglan; Yang, Qiwen; Kudinha, Timothy; Zhang, Li; Xiao, Meng; Kong, Fanrong; Zhao, Yupei; Xu, Ying-Chun

    2016-01-01

    There are challenges in viridans group streptococci (VGS) identification especially for the mitis group. Few studies have investigated the performance of MALDI-TOF MS system in VGS identification. Using 16S rRNA gene and gyrB gene sequencing as a gold standard, the performance of two MALDI-TOF MS instruments in the identification of 181 VGS clinical isolates was studied. The Bruker Biotyper and Vitek MS IVD systems correctly identified 88.4% and 98.9% of the 181 isolates, respectively. The Vitek MS RUO system was the least reliable, only correctly identifying 38.7% of the isolates to species level with several misidentifications and invalid results. The Bruker Biotyper system was very unreliable in the identification of species within the mitis group. Among 22 non-pneumococci isolates (S. mitis/S. oralis/S. pseudopneumoniae), Biotyper misidentified 21 of them as S. pneumoniae leading to a low sensitivity and low positive predictive value in these species. In contrast, the Vitek MS IVD demonstrated a better resolution for pneumococci and non-pneumococci despite the inability to distinguish between S. mitis/S. oralis. For more accurate species-level identification, further improvements in the VGS spectra databases are needed. Based on MALDI-TOF analysis and selected 16S rRNA gene plus gyrB genes sequencing, we designed a practical VGS identification algorithm.

  14. Curcumin reduces prostaglandin E2, matrix metalloproteinase-3 and proteoglycan release in the secretome of interleukin 1β-treated articular cartilage [v2; ref status: indexed, http://f1000r.es/1ks

    Directory of Open Access Journals (Sweden)

    Abigail L Clutterbuck

    2013-08-01

    Full Text Available Objective: Curcumin (diferuloylmethane is a phytochemical with potent anti-inflammatory and anti-oxidant properties, and has therapeutic potential for the treatment of a range of inflammatory diseases, including osteoarthritis (OA. The aim of this study was to determine whether non-toxic concentrations of curcumin can reduce interleukin-1beta (IL-1β-stimulated inflammation and catabolism in an explant model of cartilage inflammation. Methods: Articular cartilage explants and primary chondrocytes were obtained from equine metacarpophalangeal joints. Curcumin was added to monolayer cultured primary chondrocytes and cartilage explants in concentrations ranging from 3μM-100μM. Prostaglandin E2 (PGE2 and matrix metalloproteinase (MMP-3 release into the secretome of IL-1β-stimulated explants was measured using a competitive ELISA and western blotting respectively. Proteoglycan (PG release in the secretome was measured using the 1,9-dimethylmethylene blue (DMMB assay. Cytotoxicity was assessed with a live/dead assay in monolayer cultures after 24 hours, 48 hours and five days, and in explants after five days. Results: Curcumin induced chondrocyte death in primary cultures (50μM p<0.001 and 100μM p<0.001 after 24 hours. After 48 hours and five days, curcumin (≥25μM significantly increased cell death (p<0.001 both time points. In explants, curcumin toxicity was not observed at concentrations up to and including 25μM after five days. Curcumin (≥3μM significantly reduced IL-1β-stimulated PG (p<0.05 and PGE2 release (p<0.001 from explants, whilst curcumin (≥12μM significantly reduced MMP-3 release (p<0.01. Conclusion: Non-cytotoxic concentrations of curcumin exert anti-catabolic and anti-inflammatory effects in cartilage explants.

  15. Curcumin reduces prostaglandin E2, matrix metalloproteinase-3 and proteoglycan release in the secretome of interleukin 1β-treated articular cartilage [v1; ref status: indexed, http://f1000r.es/1cl

    Directory of Open Access Journals (Sweden)

    Abigail L Clutterbuck

    2013-07-01

    Full Text Available Objective: Curcumin (diferuloylmethane is a phytochemical with potent anti-inflammatory and anti-oxidant properties, and has therapeutic potential for the treatment of a range of inflammatory diseases, including osteoarthritis (OA. The aim of this study was to determine whether non-toxic concentrations of curcumin can reduce interleukin-1beta (IL-1β-stimulated inflammation and catabolism in an explant model of cartilage inflammation. Methods: Articular cartilage explants and primary chondrocytes were obtained from equine metacarpophalangeal joints. Curcumin was added to monolayer cultured primary chondrocytes and cartilage explants in concentrations ranging from 3μM-100μM. Prostaglandin E2 (PGE2 and matrix metalloproteinase (MMP-3 release into the secretome of IL-1β-stimulated explants was measured using a competitive ELISA and western blotting respectively. Proteoglycan (PG release in the secretome was measured using the 1,9-dimethylmethylene blue (DMMB assay. Cytotoxicity was assessed with a live/dead assay in monolayer cultures after 24 hours, 48 hours and five days, and in explants after five days. Results: Curcumin induced chondrocyte death in primary cultures (50μM p<0.001 and 100μM p<0.001 after 24 hours. After 48 hours and five days, curcumin (≥25μM significantly increased cell death (p<0.001 both time points. In explants, curcumin toxicity was not observed at concentrations up to and including 25μM after five days. Curcumin (≥3μM significantly reduced IL-1β-stimulated PG (p<0.05 and PGE2 release (p<0.001 from explants, whilst curcumin (≥12μM significantly reduced MMP-3 release (p<0.01. Conclusion: Non-cytotoxic concentrations of curcumin exert anti-catabolic and anti-inflammatory effects in cartilage explants.

  16. Spectrum of an Elliptic Free Fermionic Corner Transfer Matrix Hamiltonian

    CERN Document Server

    Cuerno, R

    1993-01-01

    The eigenvalues of the Corner Transfer Matrix Hamiltonian associated to the elliptic $R$ matrix of the eight vertex free fermion model are computed in the anisotropic case for magnetic field smaller than the critical value. An argument based on generating functions is given, and the results are checked numerically. The spectrum consists of equally spaced levels.

  17. Follow-up: Prospective compound design using the ‘SAR Matrix’ method and matrix-derived conditional probabilities of activity [v1; ref status: indexed, http://f1000r.es/56v

    Directory of Open Access Journals (Sweden)

    Disha Gupta-Ostermann

    2015-03-01

    Full Text Available In a previous Method Article, we have presented the ‘Structure-Activity Relationship (SAR Matrix’ (SARM approach. The SARM methodology is designed to systematically extract structurally related compound series from screening or chemical optimization data and organize these series and associated SAR information in matrices reminiscent of R-group tables. SARM calculations also yield many virtual candidate compounds that form a “chemical space envelope” around related series. To further extend the SARM approach, different methods are developed to predict the activity of virtual compounds. In this follow-up contribution, we describe an activity prediction method that derives conditional probabilities of activity from SARMs and report representative results of first prospective applications of this approach.

  18. Follow-up: Prospective compound design using the ‘SAR Matrix’ method and matrix-derived conditional probabilities of activity [v2; ref status: indexed, http://f1000r.es/59v

    Directory of Open Access Journals (Sweden)

    Disha Gupta-Ostermann

    2015-04-01

    Full Text Available In a previous Method Article, we have presented the ‘Structure-Activity Relationship (SAR Matrix’ (SARM approach. The SARM methodology is designed to systematically extract structurally related compound series from screening or chemical optimization data and organize these series and associated SAR information in matrices reminiscent of R-group tables. SARM calculations also yield many virtual candidate compounds that form a “chemical space envelope” around related series. To further extend the SARM approach, different methods are developed to predict the activity of virtual compounds. In this follow-up contribution, we describe an activity prediction method that derives conditional probabilities of activity from SARMs and report representative results of first prospective applications of this approach.

  19. Elementary matrix theory

    CERN Document Server

    Eves, Howard

    1980-01-01

    The usefulness of matrix theory as a tool in disciplines ranging from quantum mechanics to psychometrics is widely recognized, and courses in matrix theory are increasingly a standard part of the undergraduate curriculum.This outstanding text offers an unusual introduction to matrix theory at the undergraduate level. Unlike most texts dealing with the topic, which tend to remain on an abstract level, Dr. Eves' book employs a concrete elementary approach, avoiding abstraction until the final chapter. This practical method renders the text especially accessible to students of physics, engineeri

  20. Rheocasting Al matrix composites

    Energy Technology Data Exchange (ETDEWEB)

    Girot, F.A.; Albingre, L.; Quenisset, J.M.; Naslain, R.

    1987-11-01

    A development status account is given for the rheocasting method of Al-alloy matrix/SiC-whisker composites, which involves the incorporation and homogeneous distribution of 8-15 vol pct of whiskers through the stirring of the semisolid matrix melt while retaining sufficient fluidity for casting. Both 1-, 3-, and 6-mm fibers of Nicalon SiC and and SiC whisker reinforcements have been experimentally investigated, with attention to the characterization of the resulting microstructures and the effects of fiber-matrix interactions. A thin silica layer is found at the whisker surface. 7 references.

  1. Mueller matrix differential decomposition.

    Science.gov (United States)

    Ortega-Quijano, Noé; Arce-Diego, José Luis

    2011-05-15

    We present a Mueller matrix decomposition based on the differential formulation of the Mueller calculus. The differential Mueller matrix is obtained from the macroscopic matrix through an eigenanalysis. It is subsequently resolved into the complete set of 16 differential matrices that correspond to the basic types of optical behavior for depolarizing anisotropic media. The method is successfully applied to the polarimetric analysis of several samples. The differential parameters enable one to perform an exhaustive characterization of anisotropy and depolarization. This decomposition is particularly appropriate for studying media in which several polarization effects take place simultaneously. © 2011 Optical Society of America

  2. A PRACTICAL METHOD FOR IMPROVING CONSISTENCY OF JUDGEMENT MATRIX IN THE AHP

    Institute of Scientific and Technical Information of China (English)

    XU Zeshui

    2004-01-01

    In this paper, an approach to improving consistency of judgement matrix in the Analytic Hierarchy Process (AHP) is presented, which utilizes the eigenvector to revise a pair of entries of judgement matrix each time. By using this method, any judgement matrix with a large C.R. can be modified to a matrix which can both tally with the consistency requirement and reserve the most information that the original matrix contains.An algorithm to derive a judgement matrix with acceptable consistency (i.e., C.R. < 0.1)and two criteria of evaluating modificatory effectiveness are also given.

  3. Pesticide-Exposure Matrix

    Science.gov (United States)

    The "Pesticide-exposure Matrix" was developed to help epidemiologists and other researchers identify the active ingredients to which people were likely exposed when their homes and gardens were treated for pests in past years.

  4. Matrix comparison, Part 2

    DEFF Research Database (Denmark)

    Schneider, Jesper Wiborg; Borlund, Pia

    2007-01-01

    The present two-part article introduces matrix comparison as a formal means for evaluation purposes in informetric studies such as cocitation analysis. In the first part, the motivation behind introducing matrix comparison to informetric studies, as well as two important issues influencing...... such comparisons, matrix generation, and the composition of proximity measures, are introduced and discussed. In this second part, the authors introduce and thoroughly demonstrate two related matrix comparison techniques the Mantel test and Procrustes analysis, respectively. These techniques can compare...... important. Alternatively, or as a supplement, Procrustes analysis compares the actual ordination results without investigating the underlying proximity measures, by matching two configurations of the same objects in a multidimensional space. An advantage of the Procrustes analysis though, is the graphical...

  5. The Matrix Organization Revisited

    DEFF Research Database (Denmark)

    Gattiker, Urs E.; Ulhøi, John Parm

    1999-01-01

    This paper gives a short overview of matrix structure and technology management. It outlines some of the characteristics and also points out that many organizations may actualy be hybrids (i.e. mix several ways of organizing to allocate resorces effectively).......This paper gives a short overview of matrix structure and technology management. It outlines some of the characteristics and also points out that many organizations may actualy be hybrids (i.e. mix several ways of organizing to allocate resorces effectively)....

  6. Optical Coherency Matrix Tomography

    Science.gov (United States)

    2015-10-19

    optics has been studied theoretically11, but has not been demonstrated experimentally heretofore. Even in the simplest case of two binary DoFs6 (e.g...coherency matrix G spanning these DoFs. This optical coherency matrix has not been measured in its entirety to date—even in the simplest case of two...dense coding, etc. CREOL, The College of Optics & Photonics, University of Central Florida, Orlando , Florida 32816, USA. Correspondence and requests

  7. Matrix fractional systems

    Science.gov (United States)

    Tenreiro Machado, J. A.

    2015-08-01

    This paper addresses the matrix representation of dynamical systems in the perspective of fractional calculus. Fractional elements and fractional systems are interpreted under the light of the classical Cole-Cole, Davidson-Cole, and Havriliak-Negami heuristic models. Numerical simulations for an electrical circuit enlighten the results for matrix based models and high fractional orders. The conclusions clarify the distinction between fractional elements and fractional systems.

  8. Hacking the Matrix.

    Science.gov (United States)

    Czerwinski, Michael; Spence, Jason R

    2017-01-05

    Recently in Nature, Gjorevski et al. (2016) describe a fully defined synthetic hydrogel that mimics the extracellular matrix to support in vitro growth of intestinal stem cells and organoids. The hydrogel allows exquisite control over the chemical and physical in vitro niche and enables identification of regulatory properties of the matrix. Copyright © 2017 Elsevier Inc. All rights reserved.

  9. The Matrix Organization Revisited

    DEFF Research Database (Denmark)

    Gattiker, Urs E.; Ulhøi, John Parm

    1999-01-01

    This paper gives a short overview of matrix structure and technology management. It outlines some of the characteristics and also points out that many organizations may actualy be hybrids (i.e. mix several ways of organizing to allocate resorces effectively).......This paper gives a short overview of matrix structure and technology management. It outlines some of the characteristics and also points out that many organizations may actualy be hybrids (i.e. mix several ways of organizing to allocate resorces effectively)....

  10. R graphics

    CERN Document Server

    Murrell, Paul

    2005-01-01

    R is revolutionizing the world of statistical computing. Powerful, flexible, and best of all free, R is now the program of choice for tens of thousands of statisticians. Destined to become an instant classic, R Graphics presents the first complete, authoritative exposition on the R graphical system. Paul Murrell, widely known as the leading expert on R graphics, has developed an in-depth resource that takes nothing for granted and helps both neophyte and seasoned users master the intricacies of R graphics. After an introductory overview of R graphics facilities, the presentation first focuses

  11. Comparing the identification of Clostridium spp. by two Matrix-Assisted Laser Desorption Ionization-Time of Flight (MALDI-TOF) mass spectrometry platforms to 16S rRNA PCR sequencing as a reference standard: a detailed analysis of age of culture and sample preparation.

    Science.gov (United States)

    Chean, Roy; Kotsanas, Despina; Francis, Michelle J; Palombo, Enzo A; Jadhav, Snehal R; Awad, Milena M; Lyras, Dena; Korman, Tony M; Jenkin, Grant A

    2014-12-01

    We compared the identification of Clostridium species using mass spectrometry by two different Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF MS) platforms (Bruker MS and Vitek MS) against 16S rRNA sequencing as the reference standard. We then examined the impact of different sample preparations and (on one of those platforms) age of bacterial colonial growth on the performance of the MALDI-TOF MS systems. We identified 10 different species amongst the 52 isolates by 16S rRNA sequencing, with Clostridium perfringens the most prevalent (n=30). Spectrometric analysis using Vitek MS correctly speciated 47/52 (90.4%) isolates and was not affected by the sample preparation used. Performance of the Bruker MS was dependent on sample preparation with correct speciation obtained for 36 of 52 (69.2%) isolates tested using the Direct Transfer [DT] protocol, but all 52 (100%) isolates were correctly speciated using either an Extended Direct Transfer [EDT] or a Full Formic Extraction [EX] protocol. We then examined the effect of bacterial colonial growth age on the performance of Bruker MS and found substantial agreement in speciation using DT (Kappa=0.62, 95% CI: 0.46-0.75), almost perfect agreement for EDT (Kappa=0.94, 95% CI: 0.86-1.00) and exact agreement for EX (Kappa=1.00) between different days. Copyright © 2014 Elsevier Ltd. All rights reserved.

  12. Matrix Information Geometry

    CERN Document Server

    Bhatia, Rajendra

    2013-01-01

    This book is an outcome of the Indo-French Workshop on Matrix Information Geometries (MIG): Applications in Sensor and Cognitive Systems Engineering, which was held in Ecole Polytechnique and Thales Research and Technology Center, Palaiseau, France, in February 23-25, 2011. The workshop was generously funded by the Indo-French Centre for the Promotion of Advanced Research (IFCPAR).  During the event, 22 renowned invited french or indian speakers gave lectures on their areas of expertise within the field of matrix analysis or processing. From these talks, a total of 17 original contribution or state-of-the-art chapters have been assembled in this volume. All articles were thoroughly peer-reviewed and improved, according to the suggestions of the international referees. The 17 contributions presented  are organized in three parts: (1) State-of-the-art surveys & original matrix theory work, (2) Advanced matrix theory for radar processing, and (3) Matrix-based signal processing applications.  

  13. The Oxford handbook of random matrix theory

    CERN Document Server

    Di Francesco, Philippe; Akemann, Gernot

    2015-01-01

    With a foreword by Freeman Dyson, the handbook brings together leading mathematicians and physicists to offer a comprehensive overview of random matrix theory, including a guide to new developments and the diverse range of applications of this approach. In part one, all modern and classical techniques of solving random matrix models are explored, including orthogonal polynomials, exact replicas or supersymmetry. Further, all main extensions of the classical Gaussian ensembles of Wigner and Dyson are introduced including sparse, heavy tailed, non-Hermitian or multi-matrix models. In the second and larger part, all major applications are covered, in disciplines ranging from physics and mathematics to biology and engineering. This includes standard fields such as number theory, quantum chaos or quantum chromodynamics, as well as recent developments such as partitions, growth models, knot theory, wireless communication or bio-polymer folding. The handbook is suitable both for introducing novices to this area of r...

  14. Ceramic Matrix Composites .

    Directory of Open Access Journals (Sweden)

    J. Mukerji

    1993-10-01

    Full Text Available The present state of the knowledge of ceramic-matrix composites have been reviewed. The fracture toughness of present structural ceramics are not enough to permit design of high performance machines with ceramic parts. They also fail by catastrophic brittle fracture. It is generally believed that further improvement of fracture toughness is only possible by making composites of ceramics with ceramic fibre, particulate or platelets. Only ceramic-matrix composites capable of working above 1000 degree centigrade has been dealt with keeping reinforced plastics and metal-reinforced ceramics outside the purview. The author has discussed the basic mechanisms of toughening and fabrication of composites and the difficulties involved. Properties of available fibres and whiskers have been given. The best results obtained so far have been indicated. The limitations of improvement in properties of ceramic-matrix composites have been discussed.

  15. Matrix interdiction problem

    Energy Technology Data Exchange (ETDEWEB)

    Pan, Feng [Los Alamos National Laboratory; Kasiviswanathan, Shiva [Los Alamos National Laboratory

    2010-01-01

    In the matrix interdiction problem, a real-valued matrix and an integer k is given. The objective is to remove k columns such that the sum over all rows of the maximum entry in each row is minimized. This combinatorial problem is closely related to bipartite network interdiction problem which can be applied to prioritize the border checkpoints in order to minimize the probability that an adversary can successfully cross the border. After introducing the matrix interdiction problem, we will prove the problem is NP-hard, and even NP-hard to approximate with an additive n{gamma} factor for a fixed constant {gamma}. We also present an algorithm for this problem that achieves a factor of (n-k) mUltiplicative approximation ratio.

  16. Extracellular matrix structure.

    Science.gov (United States)

    Theocharis, Achilleas D; Skandalis, Spyros S; Gialeli, Chrysostomi; Karamanos, Nikos K

    2016-02-01

    Extracellular matrix (ECM) is a non-cellular three-dimensional macromolecular network composed of collagens, proteoglycans/glycosaminoglycans, elastin, fibronectin, laminins, and several other glycoproteins. Matrix components bind each other as well as cell adhesion receptors forming a complex network into which cells reside in all tissues and organs. Cell surface receptors transduce signals into cells from ECM, which regulate diverse cellular functions, such as survival, growth, migration, and differentiation, and are vital for maintaining normal homeostasis. ECM is a highly dynamic structural network that continuously undergoes remodeling mediated by several matrix-degrading enzymes during normal and pathological conditions. Deregulation of ECM composition and structure is associated with the development and progression of several pathologic conditions. This article emphasizes in the complex ECM structure as to provide a better understanding of its dynamic structural and functional multipotency. Where relevant, the implication of the various families of ECM macromolecules in health and disease is also presented.

  17. Finite Temperature Matrix Theory

    CERN Document Server

    Meana, M L; Peñalba, J P; Meana, Marco Laucelli; Peñalba, Jesús Puente

    1998-01-01

    We present the way the Lorentz invariant canonical partition function for Matrix Theory as a light-cone formulation of M-theory can be computed. We explicitly show how when the eleventh dimension is decompactified, the N=1 eleven dimensional SUGRA partition function appears. From this particular analysis we also clarify the question about the discernibility problem when making statistics with supergravitons (the N! problem) in Matrix black hole configurations. We also provide a high temperature expansion which captures some structure of the canonical partition function when interactions amongst D-particles are on. The connection with the semi-classical computations thermalizing the open superstrings attached to a D-particle is also clarified through a Born-Oppenheimer approximation. Some ideas about how Matrix Theory would describe the complementary degrees of freedom of the massless content of eleven dimensional SUGRA are also discussed.

  18. Active G protein-coupled receptors (GPCR), matrix metalloproteinases 2/9 (MMP2/9), heparin-binding epidermal growth factor (hbEGF), epidermal growth factor receptor (EGFR), erbB2, and insulin-like growth factor 1 receptor (IGF-1R) are necessary for trenbolone acetate-induced alterations in protein turnover rate of fused bovine satellite cell cultures.

    Science.gov (United States)

    Thornton, K J; Kamanga-Sollo, E; White, M E; Dayton, W R

    2016-06-01

    Trenbolone acetate (TBA), a testosterone analog, increases protein synthesis and decreases protein degradation in fused bovine satellite cell (BSC) cultures. However, the mechanism through which TBA alters these processes remains unknown. Recent studies indicate that androgens improve rate and extent of muscle growth through a nongenomic mechanism involving G protein-coupled receptors (GPCR), matrix metalloproteinases (MMP), heparin-binding epidermal growth factor (hbEGF), the epidermal growth factor receptor (EGFR), erbB2, and the insulin-like growth factor-1 receptor (IGF-1R). We hypothesized that TBA activates GPCR, resulting in activation of MMP2/9 that releases hbEGF, which activates the EGFR and/or erbB2. To determine whether the proposed nongenomic pathway is involved in TBA-mediated alterations in protein turnover, fused BSC cultures were treated with TBA in the presence or absence of inhibitors for GPCR, MMP2/9, hbEGF, EGFR, erbB2, or IGF-1R, and resultant protein synthesis and degradation rates were analyzed. Assays were replicated at least 9 times for each inhibitor experiment utilizing BSC cultures obtained from at least 3 different steers that had no previous exposure to steroid compounds. As expected, fused BSC cultures treated with 10 n TBA exhibited increased ( BSC cultures with 10 n TBA in the presence of inhibitors for GPCR, MMP2/9, hbEGF, EGFR, erbB2, or IGF-1R suppressed ( 0.05) effect on TBA-mediated decreases in protein degradation. However, inhibition of both EGFR and erbB2 in the presence of 10 n TBA resulted in decreased ( BSC cultures treated with 10 n TBA exhibit increased ( BSC cultures.

  19. Matrixed business support comparison study.

    Energy Technology Data Exchange (ETDEWEB)

    Parsons, Josh D.

    2004-11-01

    The Matrixed Business Support Comparison Study reviewed the current matrixed Chief Financial Officer (CFO) division staff models at Sandia National Laboratories. There were two primary drivers of this analysis: (1) the increasing number of financial staff matrixed to mission customers and (2) the desire to further understand the matrix process and the opportunities and challenges it creates.

  20. IIB Matrix Model

    CERN Document Server

    Aoki, H; Kawai, H; Kitazawa, Y; Tada, T; Tsuchiya, A

    1999-01-01

    We review our proposal for a constructive definition of superstring, type IIB matrix model. The IIB matrix model is a manifestly covariant model for space-time and matter which possesses N=2 supersymmetry in ten dimensions. We refine our arguments to reproduce string perturbation theory based on the loop equations. We emphasize that the space-time is dynamically determined from the eigenvalue distributions of the matrices. We also explain how matter, gauge fields and gravitation appear as fluctuations around dynamically determined space-time.

  1. Elementary matrix algebra

    CERN Document Server

    Hohn, Franz E

    2012-01-01

    This complete and coherent exposition, complemented by numerous illustrative examples, offers readers a text that can teach by itself. Fully rigorous in its treatment, it offers a mathematically sound sequencing of topics. The work starts with the most basic laws of matrix algebra and progresses to the sweep-out process for obtaining the complete solution of any given system of linear equations - homogeneous or nonhomogeneous - and the role of matrix algebra in the presentation of useful geometric ideas, techniques, and terminology.Other subjects include the complete treatment of the structur

  2. Rheocasting Al Matrix Composites

    Science.gov (United States)

    Girot, F. A.; Albingre, L.; Quenisset, J. M.; Naslain, R.

    1987-11-01

    Aluminum alloy matrix composites reinforced by SiC short fibers (or whiskers) can be prepared by rheocasting, a process which consists of the incorporation and homogeneous distribution of the reinforcement by stirring within a semi-solid alloy. Using this technique, composites containing fiber volume fractions in the range of 8-15%, have been obtained for various fibers lengths (i.e., 1 mm, 3 mm and 6 mm for SiC fibers). This paper attempts to delineate the best compocasting conditions for aluminum matrix composites reinforced by short SiC (e.g Nicalon) or SiC whiskers (e.g., Tokamax) and characterize the resulting microstructures.

  3. Density matrix perturbation theory.

    Science.gov (United States)

    Niklasson, Anders M N; Challacombe, Matt

    2004-05-14

    An orbital-free quantum perturbation theory is proposed. It gives the response of the density matrix upon variation of the Hamiltonian by quadratically convergent recursions based on perturbed projections. The technique allows treatment of embedded quantum subsystems with a computational cost scaling linearly with the size of the perturbed region, O(N(pert.)), and as O(1) with the total system size. The method allows efficient high order perturbation expansions, as demonstrated with an example involving a 10th order expansion. Density matrix analogs of Wigner's 2n+1 rule are also presented.

  4. Complex matrix model duality

    Energy Technology Data Exchange (ETDEWEB)

    Brown, T.W.

    2010-11-15

    The same complex matrix model calculates both tachyon scattering for the c=1 non-critical string at the self-dual radius and certain correlation functions of half-BPS operators in N=4 super- Yang-Mills. It is dual to another complex matrix model where the couplings of the first model are encoded in the Kontsevich-like variables of the second. The duality between the theories is mirrored by the duality of their Feynman diagrams. Analogously to the Hermitian Kontsevich- Penner model, the correlation functions of the second model can be written as sums over discrete points in subspaces of the moduli space of punctured Riemann surfaces. (orig.)

  5. Random Matrix Theory and Econophysics

    Science.gov (United States)

    Rosenow, Bernd

    2000-03-01

    Random Matrix Theory (RMT) [1] is used in many branches of physics as a ``zero information hypothesis''. It describes generic behavior of different classes of systems, while deviations from its universal predictions allow to identify system specific properties. We use methods of RMT to analyze the cross-correlation matrix C of stock price changes [2] of the largest 1000 US companies. In addition to its scientific interest, the study of correlations between the returns of different stocks is also of practical relevance in quantifying the risk of a given stock portfolio. We find [3,4] that the statistics of most of the eigenvalues of the spectrum of C agree with the predictions of RMT, while there are deviations for some of the largest eigenvalues. We interpret these deviations as a system specific property, e.g. containing genuine information about correlations in the stock market. We demonstrate that C shares universal properties with the Gaussian orthogonal ensemble of random matrices. Furthermore, we analyze the eigenvectors of C through their inverse participation ratio and find eigenvectors with large ratios at both edges of the eigenvalue spectrum - a situation reminiscent of localization theory results. This work was done in collaboration with V. Plerou, P. Gopikrishnan, T. Guhr, L.A.N. Amaral, and H.E Stanley and is related to recent work of Laloux et al.. 1. T. Guhr, A. Müller Groeling, and H.A. Weidenmüller, ``Random Matrix Theories in Quantum Physics: Common Concepts'', Phys. Rep. 299, 190 (1998). 2. See, e.g. R.N. Mantegna and H.E. Stanley, Econophysics: Correlations and Complexity in Finance (Cambridge University Press, Cambridge, England, 1999). 3. V. Plerou, P. Gopikrishnan, B. Rosenow, L.A.N. Amaral, and H.E. Stanley, ``Universal and Nonuniversal Properties of Cross Correlations in Financial Time Series'', Phys. Rev. Lett. 83, 1471 (1999). 4. V. Plerou, P. Gopikrishnan, T. Guhr, B. Rosenow, L.A.N. Amaral, and H.E. Stanley, ``Random Matrix Theory

  6. Zeroes in continuum - continuum dipole matrix elements

    Science.gov (United States)

    Obolensky, Oleg I.; Pratt, R. H.; Korol, Andrei

    2003-05-01

    It is well known that Cooper minima in photoeffect cross sections are due to zeroes in corresponding bound-free dipole matrix elements. As was discussed before(C. D. Shaffer, R. H. Pratt, and S. D. Oh, Phys. Rev. A. 57), 227 (1998)., free-free dipole matrix elements in screened (atomic or ionic) potentials can also have zeroes. Such zeroes (existing at energies of the order of 1-100 eV) result in structures in the energy dependence of bremsstrahlung cross sections and angular distributions(A. Florescu, O. I. Obolensky, C. D. Shaffer, and R. H. Pratt, AIP Conference Proceedings, 576), 60 (2001).. In the soft photon limit, zeroes of radiative free-free matrix elements are related to Ramsauer-Townsend minima in elastic scattering of electrons by atoms. Here we study properties of the trajectories of dipole matrix element zeroes in the plane of initial and final electron energies. We show how the trajectories in this plane evolve with ionicity for several low ℓ dipole transitions ℓ → ℓ ± 1.

  7. Relativistic recursion relations for transition matrix elements

    CERN Document Server

    Martínez y Romero, R P; Salas-Brito, A L

    2004-01-01

    We review some recent results on recursion relations which help evaluating arbitrary non-diagonal, radial hydrogenic matrix elements of $r^\\lambda$ and of $\\beta r^\\lambda$ ($\\beta$ a Dirac matrix) derived in the context of Dirac relativistic quantum mechanics. Similar recursion relations were derived some years ago by Blanchard in the non relativistic limit. Our approach is based on a generalization of the second hypervirial method previously employed in the non-relativistic Schr\\"odinger case. An extension of the relations to the case of two potentials in the so-called unshifted case, but using an arbitrary radial function instead of a power one, is also given. Several important results are obtained as special instances of our recurrence relations, such as a generalization to the relativistic case of the Pasternack-Sternheimer rule. Our results are useful in any atomic or molecular calculation which take into account relativistic corrections.

  8. On bounded rank positive semidefinite matrix completions of extreme partial correlation matrices.

    NARCIS (Netherlands)

    M. Eisenberg-Nagy (Marianna); M. Laurent (Monique); A. Varvitsiotis (Antonios)

    2012-01-01

    htmlabstractWe study a new geometric graph parameter egd(G), defined as the smallest integer r ≥ 1 for which any partial symmetric matrix which is completable to a correlation matrix and whose entries are specified at the positions of the edges of G, can be completed to a matrix in the convex hull

  9. On bounded rank positive semidefinite matrix completions of extreme partial correlation matrices.

    NARCIS (Netherlands)

    Eisenberg-Nagy, M.; Laurent, M.; Varvitsiotis, A.

    2012-01-01

    We study a new geometric graph parameter egd(G), defined as the smallest integer r ≥ 1 for which any partial symmetric matrix which is completable to a correlation matrix and whose entries are specified at the positions of the edges of G, can be completed to a matrix in the convex hull of correlatio

  10. On bounded rank positive semidefinite matrix completions of extreme partial correlation matrices.

    NARCIS (Netherlands)

    Eisenberg-Nagy, M.; Laurent, M.; Varvitsiotis, A.

    2012-01-01

    We study a new geometric graph parameter $egd(G)$, defined as the smallest integer $r\\ge 1$ for which any partial symmetric matrix which is completable to a correlation matrix and whose entries are specified at the positions of the edges of $G$, can be completed to a matrix in the convex hull of cor

  11. Dynamic Matrix Rank

    DEFF Research Database (Denmark)

    Frandsen, Gudmund Skovbjerg; Frandsen, Peter Frands

    2009-01-01

    We consider maintaining information about the rank of a matrix under changes of the entries. For n×n matrices, we show an upper bound of O(n1.575) arithmetic operations and a lower bound of Ω(n) arithmetic operations per element change. The upper bound is valid when changing up to O(n0.575) entri...... closed fields. The upper bound for element updates uses fast rectangular matrix multiplication, and the lower bound involves further development of an earlier technique for proving lower bounds for dynamic computation of rational functions.......We consider maintaining information about the rank of a matrix under changes of the entries. For n×n matrices, we show an upper bound of O(n1.575) arithmetic operations and a lower bound of Ω(n) arithmetic operations per element change. The upper bound is valid when changing up to O(n0.575) entries...... in a single column of the matrix. We also give an algorithm that maintains the rank using O(n2) arithmetic operations per rank one update. These bounds appear to be the first nontrivial bounds for the problem. The upper bounds are valid for arbitrary fields, whereas the lower bound is valid for algebraically...

  12. Empirical codon substitution matrix

    Directory of Open Access Journals (Sweden)

    Gonnet Gaston H

    2005-06-01

    Full Text Available Abstract Background Codon substitution probabilities are used in many types of molecular evolution studies such as determining Ka/Ks ratios, creating ancestral DNA sequences or aligning coding DNA. Until the recent dramatic increase in genomic data enabled construction of empirical matrices, researchers relied on parameterized models of codon evolution. Here we present the first empirical codon substitution matrix entirely built from alignments of coding sequences from vertebrate DNA and thus provide an alternative to parameterized models of codon evolution. Results A set of 17,502 alignments of orthologous sequences from five vertebrate genomes yielded 8.3 million aligned codons from which the number of substitutions between codons were counted. From this data, both a probability matrix and a matrix of similarity scores were computed. They are 64 × 64 matrices describing the substitutions between all codons. Substitutions from sense codons to stop codons are not considered, resulting in block diagonal matrices consisting of 61 × 61 entries for the sense codons and 3 × 3 entries for the stop codons. Conclusion The amount of genomic data currently available allowed for the construction of an empirical codon substitution matrix. However, more sequence data is still needed to construct matrices from different subsets of DNA, specific to kingdoms, evolutionary distance or different amount of synonymous change. Codon mutation matrices have advantages for alignments up to medium evolutionary distances and for usages that require DNA such as ancestral reconstruction of DNA sequences and the calculation of Ka/Ks ratios.

  13. Matrix Embedded Organic Synthesis

    Science.gov (United States)

    Kamakolanu, U. G.; Freund, F. T.

    2016-05-01

    In the matrix of minerals such as olivine, a redox reaction of the low-z elements occurs. Oxygen is oxidized to the peroxy state while the low-Z-elements become chemically reduced. We assign them a formula [CxHyOzNiSj]n- and call them proto-organics.

  14. Corrosion Protection of Metal Matrix Composites

    Science.gov (United States)

    1990-04-01

    2, 162 (1986). 8. B. R. W. Hinton, D. R. Arnott, and N. E. Ryan, Metals Forum, Z, 211,(1984) 9. Ullmann , Fritz, "Ullmann’s Encyclopedia of Industrial ... Chemistry ", (1985). 10. F. Keller, M. S . Hunter, and 0. L. Robinson, J. Electrochem Soc., IM0, 411 0 (1953) 11. F. Mansfeld, S . Lin, S . Kim, and H...OIC FILE COPY "/9° * AD-A222 951 CORROSION PROTECTION OF METAL MATRIX COMPOSITES 0 FINAL REPORT F. MANSFELD, S . LIN AND H. SHIN APRIL 1990 0 U. S

  15. The Tetrahedral Zamolodchikov Algebra and the {AdS_5× S^5} S-matrix

    Science.gov (United States)

    Mitev, Vladimir; Staudacher, Matthias; Tsuboi, Zengo

    2017-08-01

    The S-matrix of the {AdS_5× S^5} string theory is a tensor product of two centrally extended su{(2|2)\\ltimes R^2 S-matrices, each of which is related to the R-matrix of the Hubbard model. The R-matrix of the Hubbard model was first found by Shastry, who ingeniously exploited the fact that, for zero coupling, the Hubbard model can be decomposed into two XX models. In this article, we review and clarify this construction from the AdS/CFT perspective and investigate the implications this has for the {AdS_5× S^5} S-matrix.

  16. Parallel R

    CERN Document Server

    McCallum, Ethan

    2011-01-01

    It's tough to argue with R as a high-quality, cross-platform, open source statistical software product-unless you're in the business of crunching Big Data. This concise book introduces you to several strategies for using R to analyze large datasets. You'll learn the basics of Snow, Multicore, Parallel, and some Hadoop-related tools, including how to find them, how to use them, when they work well, and when they don't. With these packages, you can overcome R's single-threaded nature by spreading work across multiple CPUs, or offloading work to multiple machines to address R's memory barrier.

  17. Modified 16S-23S rRNA intergenic region restriction endonuclease analysis for species identification of Enterococcus strains isolated from pigs, compared with identification using classical methods and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

    Science.gov (United States)

    Nowakiewicz, Aneta; Ziółkowska, Grażyna; Zięba, Przemysław; Trościańczyk, Aleksandra; Banach, Tomasz; Kowalski, Cezary

    2015-03-01

    Fast and reliable identification of bacteria to at least the species level is currently the basis for correct diagnosis and appropriate treatment of infections. This is particularly important in the case of bacteria of the genus Enterococcus, whose resistance profile is often correlated with their species (e.g. resistance to vancomycin). In this study, we evaluated restriction endonuclease analysis of the 16S-23S rRNA gene intergenic transcribed spacer (ITS) region for species identification of Enterococcus. The utility of the method was compared with that of phenotypic methods [biochemical profile evaluation and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS)]. Identification was based on 21 Enterococcus reference strains, of the species E. faecalis, E. faecium, E. hirae, E. durans, E. casseliflavus, E. gallinarum, E. avium, E. cecorum and E. columbae, and 47 Enterococcus field strains isolated from pigs. Restriction endonuclease analysis of the ITS-PCR product using HinfI, RsaI and MboI, in the order specified, enabled species differentiation of the Enterococcus reference and field strains, and in the case of the latter, the results of species identification were identical (47/47) to those obtained by MALDI-TOF MS. Moreover, as a result of digestion with MboI, a unique restriction profile was also obtained for the strains (3/3) identified by MALDI-TOF MS as E. thailandicus. In our opinion, restriction endonuclease analysis of the 16S-23S rRNA gene ITS region of Enterococcus may be a simple and relatively fast (less than 4 h) alternative method for identifying the species occurring most frequently in humans and animals.

  18. R + R$^{2}$ gravity as R + backreaction

    CERN Document Server

    Kung, J H

    1995-01-01

    Quadratic theory of gravity is a complicated constraint system. We investigate some consequences of treating quadratic terms perturbatively (higher derivative version of backreaction effects). This approach is shown to overcome some well known problems associated with higher derivative theories, i.e., the physical gravitational degree of freedom remains unchanged from those of Einstein gravity. Using such an interpretation of R + \\beta R^2 gravity, we investigate a classical and Wheeler DeWitt evolution of R + \\beta R^2 gravity for a particular sign of \\beta, corresponding to non- tachyon case. Matter is described by a phenomenological \\rho \\propto a(t)^{-n}. It is concluded that both the Friedmann potential U(a) ( {\\dot a}^2 + 2U(a) = 0 ) and the Wheeler DeWitt potential W(a) (\\left[-{\\partial^2\\over \\partial a^2} + 2W(a)\\right]\\psi (a) =0 ) develop repulsive barriers near a\\approx 0 for n>4 (i.e., p > {1\\over 3}\\rho ). The interpretations is clear. Repulsive barrier in U(a) implies that a contracting FRW un...

  19. Matrix string theory

    Science.gov (United States)

    Dijkgraaf, Robbert; Verlinde, Erik; Verlinde, Herman

    1997-02-01

    Via compactification on a circle, the matrix mode] of M-theory proposed by Banks et a]. suggests a concrete identification between the large N limit of two-dimensional N = 8 supersymmetric Yang-Mills theory and type IIA string theory. In this paper we collect evidence that supports this identification. We explicitly identify the perturbative string states and their interactions, and describe the appearance of D-particle and D-membrane states.

  20. Matrix string theory

    Energy Technology Data Exchange (ETDEWEB)

    Dijkgraaf, R. [Amsterdam Univ. (Netherlands). Dept. of Mathematics; Verlinde, E. [TH-Division, CERN, CH-1211 Geneva 23 (Switzerland)]|[Institute for Theoretical Physics, Universtity of Utrecht, 3508 TA Utrecht (Netherlands); Verlinde, H. [Institute for Theoretical Physics, University of Amsterdam, 1018 XE Amsterdam (Netherlands)

    1997-09-01

    Via compactification on a circle, the matrix model of M-theory proposed by Banks et al. suggests a concrete identification between the large N limit of two-dimensional N=8 supersymmetric Yang-Mills theory and type IIA string theory. In this paper we collect evidence that supports this identification. We explicitly identify the perturbative string states and their interactions, and describe the appearance of D-particle and D-membrane states. (orig.).

  1. Matrix String Theory

    CERN Document Server

    Dijkgraaf, R; Verlinde, Herman L

    1997-01-01

    Via compactification on a circle, the matrix model of M-theory proposed by Banks et al suggests a concrete identification between the large N limit of two-dimensional N=8 supersymmetric Yang-Mills theory and type IIA string theory. In this paper we collect evidence that supports this identification. We explicitly identify the perturbative string states and their interactions, and describe the appearance of D-particle and D-membrane states.

  2. Holomorphic matrix integrals

    CERN Document Server

    Felder, G; Felder, Giovanni; Riser, Roman

    2004-01-01

    We study a class of holomorphic matrix models. The integrals are taken over middle dimensional cycles in the space of complex square matrices. As the size of the matrices tends to infinity, the distribution of eigenvalues is given by a measure with support on a collection of arcs in the complex planes. We show that the arcs are level sets of the imaginary part of a hyperelliptic integral connecting branch points.

  3. Matrix groups for undergraduates

    CERN Document Server

    Tapp, Kristopher

    2016-01-01

    Matrix groups touch an enormous spectrum of the mathematical arena. This textbook brings them into the undergraduate curriculum. It makes an excellent one-semester course for students familiar with linear and abstract algebra and prepares them for a graduate course on Lie groups. Matrix Groups for Undergraduates is concrete and example-driven, with geometric motivation and rigorous proofs. The story begins and ends with the rotations of a globe. In between, the author combines rigor and intuition to describe the basic objects of Lie theory: Lie algebras, matrix exponentiation, Lie brackets, maximal tori, homogeneous spaces, and roots. This second edition includes two new chapters that allow for an easier transition to the general theory of Lie groups. From reviews of the First Edition: This book could be used as an excellent textbook for a one semester course at university and it will prepare students for a graduate course on Lie groups, Lie algebras, etc. … The book combines an intuitive style of writing w...

  4. Metal matrix Composites

    Directory of Open Access Journals (Sweden)

    Pradeep K. Rohatgi

    1993-10-01

    Full Text Available This paper reviews the world wide upsurge in metal matrix composite research and development activities with particular emphasis on cast metal-matrix particulate composites. Extensive applications of cast aluminium alloy MMCs in day-to-day use in transportation as well as durable good industries are expected to advance rapidly in the next decade. The potential for extensive application of cast composites is very large in India, especially in the areas of transportation, energy and electromechanical machinery; the extensive use of composites can lead to large savings in materials and energy, and in several instances, reduce environmental pollution. It is important that engineering education and short-term courses be organized to bring MMCs to the attention of students and engineering industry leaders. India already has excellent infrastructure for development of composites, and has a long track record of world class research in cast metal matrix particulate composites. It is now necessary to catalyze prototype and regular production of selected composite components, and get them used in different sectors, especially railways, cars, trucks, buses, scooters and other electromechanical machinery. This will require suitable policies backed up by funding to bring together the first rate talent in cast composites which already exists in India, to form viable development groups followed by setting up of production plants involving the process engineering capability already available within the country. On the longer term, cast composites should be developed for use in energy generation equipment, electronic packaging aerospace systems, and smart structures.

  5. Matrix Theory of Small Oscillations

    Science.gov (United States)

    Chavda, L. K.

    1978-01-01

    A complete matrix formulation of the theory of small oscillations is presented. Simple analytic solutions involving matrix functions are found which clearly exhibit the transients, the damping factors, the Breit-Wigner form for resonances, etc. (BB)

  6. Matrix Completions and Chordal Graphs

    Institute of Scientific and Technical Information of China (English)

    Kenneth John HARRISON

    2003-01-01

    In a matrix-completion problem the aim is to specifiy the missing entries of a matrix inorder to produce a matrix with particular properties. In this paper we survey results concerning matrix-completion problems where we look for completions of various types for partial matrices supported ona given pattern. We see that thc existence of completions of the required type often depends on thechordal properties of graphs associated with the pattern.

  7. THE GENERALIZED POLARIZATION SCATTERING MATRIX

    Science.gov (United States)

    the Least Square Best Estimate of the Generalized Polarization matrix from a set of measurements is then developed. It is shown that the Faraday...matrix data. It is then shown that the Least Square Best Estimate of the orientation angle of a symmetric target is also determinable from Faraday rotation contaminated short pulse monostatic polarization matrix data.

  8. Den professionsetiske matrix

    DEFF Research Database (Denmark)

    Ribers, Bjørn

    2013-01-01

    Etikken er en måde at beskrive pædagogisk faglighed på. De fleste vældfærdsprofessioner har efterhånden etableret etiske råd og etiske værdigrundlag. På det pædagogiske område har blandt andet fagforeningerne inddraget etikken som en del af deres dialog om professionsfaglighed. Centralt står etis...

  9. A NOTE ON SOBOLEV ORTHOGONALITY FOR LAGUERRE MATRIX POLYNOMIALS

    Institute of Scientific and Technical Information of China (English)

    Zhihui Zhu; Zhongkai Li

    2007-01-01

    Let {Ln(A,λ)(x)}n≥0 be the sequence of monic Laguerre matrix polynomials defined on [0, ∞) by Ln(A,λ)(x)=n!/(-λ)n∑nk=0(-λ)κ/k!(n-1)! (A+I)n[(A+I)k]-1 xk,where A ∈ Cr×r. It is known that {Ln(A,λ)(x)}n≥0 is orthogonal with respect to a matrix moment functional when A satisfies the spectral condition that Re(z) > - 1 for every z ∈σ(A).In this note we show that forA such that σ(A) does not contain negative integers, the Laguerre matrix polynomials Ln(A,λ) (x) are orthogonal with respect to a non-diagonal SobolevLaguerre matrix moment functional, which extends two cases: the above matrix case and the known scalar case.

  10. Manipulation of biological cells with a microelectromagnet matrix

    Science.gov (United States)

    Lee, Hakho; Hunt, Tom P.; Westervelt, Robert M.

    2004-03-01

    Microscopic manipulation of biological cells was demonstrated with a microelectromagnet matrix. The matrix has two layers of straight Au wires, aligned perpendicular to each other, that are covered with insulating layers [1]. Strong and localized magnetic fields by the matrix allow the stable micromanipulation of magnetically tagged biological cells in a fluid. Moreover, by adjusting current in each wire, a microelectromagnet matrix can create versatile magnetic field patterns for the independent and simultaneous manipulation of multiple cells. In this talk, we present the manipulation of magnetically tagged yeast cells in micron length scales with a matrix. Single or multiple cells were trapped, continuously moved and rotated in a fluid; a viable cell was separated from nonviable ones and was independently moved for cell sorting. [1] C.S. Lee, H. Lee and R.M. Westervelt, Appl. Phys. Lett. 79, 3308 (2001)

  11. (R-Doxylaminium (R,R-tartrate

    Directory of Open Access Journals (Sweden)

    A.S. Dayananda

    2012-04-01

    Full Text Available In the title compound (systematic name: (R-dimethyl{2-[1-phenyl-1-(pyridin-2-ylethoxy]ethyl}azanium (R,R-3-carboxy-2,3-dihydroxypropanoate, C17H23N2O+·C4H5O6−, the doxylaminium cation is protonated at the N atom. The tartrate monoanions are linked by short, almost linear O—H...O hydrogen bonds into chains extended along [100]. These chains are interlinked by anion–pyridine O—H...N hydrogen bonds into a two-dimensional grid structure. WeakC—H...O interactions also play a role in the crystal packing. An intramolecular hydroxy–carboxylate O—H...O hydrogen bond influences the conformation of the anion: the hydrogen-bonded fragment is almost planar, the maximum deviation from the mean plane being 0.059 (14 Å. In the cation, the aromatic rings are almost perpendicular [dihedral angle = 84.94 (8°] and the conformation of the O—C—C—N chain is gauche(−, the dihedral angle is −76.6 (2°. The absolute configuration was assigned on the basis of known chirality of the parent compound.

  12. Subspace Expanders and Matrix Rank Minimization

    CERN Document Server

    Khajehnejad, Amin; Hassibi, Babak

    2011-01-01

    Matrix rank minimization (RM) problems recently gained extensive attention due to numerous applications in machine learning, system identification and graphical models. In RM problem, one aims to find the matrix with the lowest rank that satisfies a set of linear constraints. The existing algorithms include nuclear norm minimization (NNM) and singular value thresholding. Thus far, most of the attention has been on i.i.d. Gaussian measurement operators. In this work, we introduce a new class of measurement operators, and a novel recovery algorithm, which is notably faster than NNM. The proposed operators are based on what we refer to as subspace expanders, which are inspired by the well known expander graphs based measurement matrices in compressed sensing. We show that given an $n\\times n$ PSD matrix of rank $r$, it can be uniquely recovered from a minimal sampling of $O(nr)$ measurements using the proposed structures, and the recovery algorithm can be cast as matrix inversion after a few initial processing s...

  13. The cellulose resource matrix.

    Science.gov (United States)

    Keijsers, Edwin R P; Yılmaz, Gülden; van Dam, Jan E G

    2013-03-01

    The emerging biobased economy is causing shifts from mineral fossil oil based resources towards renewable resources. Because of market mechanisms, current and new industries utilising renewable commodities, will attempt to secure their supply of resources. Cellulose is among these commodities, where large scale competition can be expected and already is observed for the traditional industries such as the paper industry. Cellulose and lignocellulosic raw materials (like wood and non-wood fibre crops) are being utilised in many industrial sectors. Due to the initiated transition towards biobased economy, these raw materials are intensively investigated also for new applications such as 2nd generation biofuels and 'green' chemicals and materials production (Clark, 2007; Lange, 2007; Petrus & Noordermeer, 2006; Ragauskas et al., 2006; Regalbuto, 2009). As lignocellulosic raw materials are available in variable quantities and qualities, unnecessary competition can be avoided via the choice of suitable raw materials for a target application. For example, utilisation of cellulose as carbohydrate source for ethanol production (Kabir Kazi et al., 2010) avoids the discussed competition with easier digestible carbohydrates (sugars, starch) deprived from the food supply chain. Also for cellulose use as a biopolymer several different competing markets can be distinguished. It is clear that these applications and markets will be influenced by large volume shifts. The world will have to reckon with the increase of competition and feedstock shortage (land use/biodiversity) (van Dam, de Klerk-Engels, Struik, & Rabbinge, 2005). It is of interest - in the context of sustainable development of the bioeconomy - to categorize the already available and emerging lignocellulosic resources in a matrix structure. When composing such "cellulose resource matrix" attention should be given to the quality aspects as well as to the available quantities and practical possibilities of processing the

  14. Matrix string partition function

    CERN Document Server

    Kostov, Ivan K; Kostov, Ivan K.; Vanhove, Pierre

    1998-01-01

    We evaluate quasiclassically the Ramond partition function of Euclidean D=10 U(N) super Yang-Mills theory reduced to a two-dimensional torus. The result can be interpreted in terms of free strings wrapping the space-time torus, as expected from the point of view of Matrix string theory. We demonstrate that, when extrapolated to the ultraviolet limit (small area of the torus), the quasiclassical expressions reproduce exactly the recently obtained expression for the partition of the completely reduced SYM theory, including the overall numerical factor. This is an evidence that our quasiclassical calculation might be exact.

  15. Matrix vector analysis

    CERN Document Server

    Eisenman, Richard L

    2005-01-01

    This outstanding text and reference applies matrix ideas to vector methods, using physical ideas to illustrate and motivate mathematical concepts but employing a mathematical continuity of development rather than a physical approach. The author, who taught at the U.S. Air Force Academy, dispenses with the artificial barrier between vectors and matrices--and more generally, between pure and applied mathematics.Motivated examples introduce each idea, with interpretations of physical, algebraic, and geometric contexts, in addition to generalizations to theorems that reflect the essential structur

  16. Random matrix theory

    CERN Document Server

    Deift, Percy

    2009-01-01

    This book features a unified derivation of the mathematical theory of the three classical types of invariant random matrix ensembles-orthogonal, unitary, and symplectic. The authors follow the approach of Tracy and Widom, but the exposition here contains a substantial amount of additional material, in particular, facts from functional analysis and the theory of Pfaffians. The main result in the book is a proof of universality for orthogonal and symplectic ensembles corresponding to generalized Gaussian type weights following the authors' prior work. New, quantitative error estimates are derive

  17. Supported Molecular Matrix Electrophoresis.

    Science.gov (United States)

    Matsuno, Yu-Ki; Kameyama, Akihiko

    2015-01-01

    Mucins are difficult to separate using conventional gel electrophoresis methods such as SDS-PAGE and agarose gel electrophoresis, owing to their large size and heterogeneity. On the other hand, cellulose acetate membrane electrophoresis can separate these molecules, but is not compatible with glycan analysis. Here, we describe a novel membrane electrophoresis technique, termed "supported molecular matrix electrophoresis" (SMME), in which a porous polyvinylidene difluoride (PVDF) membrane filter is used to achieve separation. This description includes the separation, visualization, and glycan analysis of mucins with the SMME technique.

  18. Matrix algebra for linear models

    CERN Document Server

    Gruber, Marvin H J

    2013-01-01

    Matrix methods have evolved from a tool for expressing statistical problems to an indispensable part of the development, understanding, and use of various types of complex statistical analyses. This evolution has made matrix methods a vital part of statistical education. Traditionally, matrix methods are taught in courses on everything from regression analysis to stochastic processes, thus creating a fractured view of the topic. Matrix Algebra for Linear Models offers readers a unique, unified view of matrix analysis theory (where and when necessary), methods, and their applications. Written f

  19. Extracellular Matrix Proteins

    Directory of Open Access Journals (Sweden)

    Linda Christian Carrijo-Carvalho

    2012-01-01

    Full Text Available Lipocalin family members have been implicated in development, regeneration, and pathological processes, but their roles are unclear. Interestingly, these proteins are found abundant in the venom of the Lonomia obliqua caterpillar. Lipocalins are β-barrel proteins, which have three conserved motifs in their amino acid sequence. One of these motifs was shown to be a sequence signature involved in cell modulation. The aim of this study is to investigate the effects of a synthetic peptide comprising the lipocalin sequence motif in fibroblasts. This peptide suppressed caspase 3 activity and upregulated Bcl-2 and Ki-67, but did not interfere with GPCR calcium mobilization. Fibroblast responses also involved increased expression of proinflammatory mediators. Increase of extracellular matrix proteins, such as collagen, fibronectin, and tenascin, was observed. Increase in collagen content was also observed in vivo. Results indicate that modulation effects displayed by lipocalins through this sequence motif involve cell survival, extracellular matrix remodeling, and cytokine signaling. Such effects can be related to the lipocalin roles in disease, development, and tissue repair.

  20. Open intersection numbers, matrix models and MKP hierarchy

    CERN Document Server

    Alexandrov, A

    2014-01-01

    In this paper we claim that the generating function of the intersection numbers on the moduli spaces of Riemann surfaces with boundary, constructed recently by R. Pandharipande, J. Solomon and R. Tessler and extended by A. Buryak, is a tau-function of the KP integrable hierarchy. Moreover, it is given by a simple modification of the Kontsevich matrix integral so that the generating functions of open and closed intersection numbers are described by the MKP integrable hierarchy. Virasoro constraints for the open intersection numbers naturally follow from the matrix integral representation.

  1. Open intersection numbers, matrix models and MKP hierarchy

    Energy Technology Data Exchange (ETDEWEB)

    Alexandrov, A. [Freiburg Institute for Advanced Studies (FRIAS), University of Freiburg,Albertstrasse 19, 79104 Freiburg (Germany); Mathematics Institute, University of Freiburg,Eckerstrasse 1, 79104 Freiburg (Germany); ITEP,Bolshaya Cheremushkinskaya 25, 117218 Moscow (Russian Federation)

    2015-03-09

    In this paper we conjecture that the generating function of the intersection numbers on the moduli spaces of Riemann surfaces with boundary, constructed recently by R. Pandharipande, J. Solomon and R. Tessler and extended by A. Buryak, is a tau-function of the KP integrable hierarchy. Moreover, it is given by a simple modification of the Kontsevich matrix integral so that the generating functions of open and closed intersection numbers are described by the MKP integrable hierarchy. Virasoro constraints for the open intersection numbers naturally follow from the matrix integral representation.

  2. At R407/R408

    CERN Multimedia

    1974-01-01

    R407/R408 were experiments designed by the CERN-Collège de France-Heidelberg-Karlsruhe Collaboration to study two-particle correlations in the fragmentation region requiring a large transverse momentum particle in the forward direction. Atmospheric pressure Cerenkov counters were part of the additional equipment set up during 1974 at the SFM facility. Here Paul Hanke multi-reflected on Cerenkov mirrors.

  3. Matrix Graph Grammars

    CERN Document Server

    Velasco, Pedro Pablo Perez

    2008-01-01

    This book objective is to develop an algebraization of graph grammars. Equivalently, we study graph dynamics. From the point of view of a computer scientist, graph grammars are a natural generalization of Chomsky grammars for which a purely algebraic approach does not exist up to now. A Chomsky (or string) grammar is, roughly speaking, a precise description of a formal language (which in essence is a set of strings). On a more discrete mathematical style, it can be said that graph grammars -- Matrix Graph Grammars in particular -- study dynamics of graphs. Ideally, this algebraization would enforce our understanding of grammars in general, providing new analysis techniques and generalizations of concepts, problems and results known so far.

  4. Light cone matrix product

    Energy Technology Data Exchange (ETDEWEB)

    Hastings, Matthew B [Los Alamos National Laboratory

    2009-01-01

    We show how to combine the light-cone and matrix product algorithms to simulate quantum systems far from equilibrium for long times. For the case of the XXZ spin chain at {Delta} = 0.5, we simulate to a time of {approx} 22.5. While part of the long simulation time is due to the use of the light-cone method, we also describe a modification of the infinite time-evolving bond decimation algorithm with improved numerical stability, and we describe how to incorporate symmetry into this algorithm. While statistical sampling error means that we are not yet able to make a definite statement, the behavior of the simulation at long times indicates the appearance of either 'revivals' in the order parameter as predicted by Hastings and Levitov (e-print arXiv:0806.4283) or of a distinct shoulder in the decay of the order parameter.

  5. Matrix membranes and integrability

    Energy Technology Data Exchange (ETDEWEB)

    Zachos, C. [Argonne National Lab., IL (United States); Fairlie, D. [University of Durham (United Kingdom). Dept. of Mathematical Sciences; Curtright, T. [University of Miami, Coral Gables, FL (United States). Dept. of Physics

    1997-06-01

    This is a pedagogical digest of results reported in Curtright, Fairlie, {ampersand} Zachos 1997, and an explicit implementation of Euler`s construction for the solution of the Poisson Bracket dual Nahm equation. But it does not cover 9 and 10-dimensional systems, and subsequent progress on them Fairlie 1997. Cubic interactions are considered in 3 and 7 space dimensions, respectively, for bosonic membranes in Poisson Bracket form. Their symmetries and vacuum configurations are explored. Their associated first order equations are transformed to Nahm`s equations, and are hence seen to be integrable, for the 3-dimensional case, by virtue of the explicit Lax pair provided. Most constructions introduced also apply to matrix commutator or Moyal Bracket analogs.

  6. The Tetrahedron Zamolodchikov Algebra and the AdS5 x S5 S-matrix

    CERN Document Server

    Mitev, Vladimir; Tsuboi, Zengo

    2012-01-01

    The S-matrix of the AdS5 x S5 string theory is a tensor product of two centrally extended su(2|2) S-matrices, each of which is related to the R-matrix of the Hubbard model. The R-matrix of the Hubbard model was first found by Shastry, who ingeniously exploited the fact that, for zero coupling, the Hubbard model can be decomposed into two XX models. In this article, we review and clarify this construction from the AdS/CFT perspective and investigate the implications this has for the AdS5 x S5 S-matrix.

  7. Spherical membranes in Matrix theory

    CERN Document Server

    Kabat, D; Kabat, Daniel; Taylor, Washington

    1998-01-01

    We consider membranes of spherical topology in uncompactified Matrix theory. In general for large membranes Matrix theory reproduces the classical membrane dynamics up to 1/N corrections; for certain simple membrane configurations, the equations of motion agree exactly at finite N. We derive a general formula for the one-loop Matrix potential between two finite-sized objects at large separations. Applied to a graviton interacting with a round spherical membrane, we show that the Matrix potential agrees with the naive supergravity potential for large N, but differs at subleading orders in N. The result is quite general: we prove a pair of theorems showing that for large N, after removing the effects of gravitational radiation, the one-loop potential between classical Matrix configurations agrees with the long-distance potential expected from supergravity. As a spherical membrane shrinks, it eventually becomes a black hole. This provides a natural framework to study Schwarzschild black holes in Matrix theory.

  8. Lectures on Matrix Field Theory

    Science.gov (United States)

    Ydri, Badis

    The subject of matrix field theory involves matrix models, noncommutative geometry, fuzzy physics and noncommutative field theory and their interplay. In these lectures, a lot of emphasis is placed on the matrix formulation of noncommutative and fuzzy spaces, and on the non-perturbative treatment of the corresponding field theories. In particular, the phase structure of noncommutative $\\phi^4$ theory is treated in great detail, and an introduction to noncommutative gauge theory is given.

  9. Matrix elements of unstable states

    CERN Document Server

    Bernard, V; Meißner, U -G; Rusetsky, A

    2012-01-01

    Using the language of non-relativistic effective Lagrangians, we formulate a systematic framework for the calculation of resonance matrix elements in lattice QCD. The generalization of the L\\"uscher-Lellouch formula for these matrix elements is derived. We further discuss in detail the procedure of the analytic continuation of the resonance matrix elements into the complex energy plane and investigate the infinite-volume limit.

  10. A matrix model for WZW

    Energy Technology Data Exchange (ETDEWEB)

    Dorey, Nick [Department of Applied Mathematics and Theoretical Physics, University of Cambridge,Wilberforce Road, Cambridge, CB3 OWA (United Kingdom); Tong, David [Department of Applied Mathematics and Theoretical Physics, University of Cambridge,Wilberforce Road, Cambridge, CB3 OWA (United Kingdom); Department of Theoretical Physics, TIFR,Homi Bhabha Road, Mumbai 400 005 (India); Stanford Institute for Theoretical Physics,Via Pueblo, Stanford, CA 94305 (United States); Turner, Carl [Department of Applied Mathematics and Theoretical Physics, University of Cambridge,Wilberforce Road, Cambridge, CB3 OWA (United Kingdom)

    2016-08-01

    We study a U(N) gauged matrix quantum mechanics which, in the large N limit, is closely related to the chiral WZW conformal field theory. This manifests itself in two ways. First, we construct the left-moving Kac-Moody algebra from matrix degrees of freedom. Secondly, we compute the partition function of the matrix model in terms of Schur and Kostka polynomials and show that, in the large N limit, it coincides with the partition function of the WZW model. This same matrix model was recently shown to describe non-Abelian quantum Hall states and the relationship to the WZW model can be understood in this framework.

  11. A Matrix Model for WZW

    CERN Document Server

    Dorey, Nick; Turner, Carl

    2016-01-01

    We study a U(N) gauged matrix quantum mechanics which, in the large N limit, is closely related to the chiral WZW conformal field theory. This manifests itself in two ways. First, we construct the left-moving Kac-Moody algebra from matrix degrees of freedom. Secondly, we compute the partition function of the matrix model in terms of Schur and Kostka polynomials and show that, in the large $N$ limit, it coincides with the partition function of the WZW model. This same matrix model was recently shown to describe non-Abelian quantum Hall states and the relationship to the WZW model can be understood in this framework.

  12. Extended Matrix Variate Hypergeometric Functions and Matrix Variate Distributions

    Directory of Open Access Journals (Sweden)

    Daya K. Nagar

    2015-01-01

    Full Text Available Hypergeometric functions of matrix arguments occur frequently in multivariate statistical analysis. In this paper, we define and study extended forms of Gauss and confluent hypergeometric functions of matrix arguments and show that they occur naturally in statistical distribution theory.

  13. R Fluids

    Directory of Open Access Journals (Sweden)

    Caimmi, R.

    2008-06-01

    Full Text Available A theory of collisionless fluids is developed in a unified picture, where nonrotating $(widetilde{Omega_1}=widetilde{Omega_2}= widetilde{Omega_3}=0$ figures with some given random velocity component distributions, and rotating $(widetilde{Omega_1} ewidetilde{Omega_2} e widetilde{Omega_3} $ figures with a different random velocity component distributions, make adjoint configurations to the same system. R fluids are defined as ideal, self-gravitating fluids satisfying the virial theorem assumptions, in presence of systematic rotation around each of the principal axes of inertia. To this aim, mean and rms angular velocities and mean and rms tangential velocity components are expressed, by weighting on the moment of inertia and the mass, respectively. The figure rotation is defined as the mean angular velocity, weighted on the moment of inertia, with respectto a selected axis. The generalized tensor virial equations (Caimmi and Marmo 2005 are formulated for R fluidsand further attention is devoted to axisymmetric configurations where, for selected coordinateaxes, a variation in figure rotation has to be counterbalanced by a variation in anisotropy excess and viceversa. A microscopical analysis of systematic and random motions is performed under a fewgeneral hypotheses, by reversing the sign of tangential or axial velocity components of anassigned fraction of particles, leaving the distribution function and other parametersunchanged (Meza 2002. The application of the reversion process to tangential velocitycomponents is found to imply the conversion of random motion rotation kinetic energy intosystematic motion rotation kinetic energy. The application ofthe reversion process to axial velocity components is found to imply the conversionof random motion translation kinetic energy into systematic motion translation kinetic energy, and theloss related to a change of reference frame is expressed in terms of systematic motion (imaginary rotation kinetic

  14. R fluids

    Directory of Open Access Journals (Sweden)

    Caimmi R.

    2008-01-01

    Full Text Available A theory of collisionless fluids is developed in a unified picture, where nonrotating (Ωf1 = Ωf2 = Ωf3 = 0 figures with some given random velocity component distributions, and rotating (Ωf1 = Ωf2 = Ωf3 figures with a different random velocity component distributions, make adjoint configurations to the same system. R fluids are defined as ideal, self-gravitating fluids satisfying the virial theorem assumptions, in presence of systematic rotation around each of the principal axes of inertia. To this aim, mean and rms angular velocities and mean and rms tangential velocity components are expressed, by weighting on the moment of inertia and the mass, respectively. The figure rotation is defined as the mean angular velocity, weighted on the moment of inertia, with respect to a selected axis. The generalized tensor virial equations (Caimmi and Marmo 2005 are formulated for R fluids and further attention is devoted to axisymmetric configurations where, for selected coordinate axes, a variation in figure rotation has to be counterbalanced by a variation in anisotropy excess and vice versa. A microscopical analysis of systematic and random motions is performed under a few general hypotheses, by reversing the sign of tangential or axial velocity components of an assigned fraction of particles, leaving the distribution function and other parameters unchanged (Meza 2002. The application of the reversion process to tangential velocity components is found to imply the conversion of random motion rotation kinetic energy into systematic motion rotation kinetic energy. The application of the reversion process to axial velocity components is found to imply the conversion of random motion translation kinetic energy into systematic motion translation kinetic energy, and the loss related to a change of reference frame is expressed in terms of systematic motion (imaginary rotation kinetic energy. A number of special situations are investigated in greater

  15. Matrix Product Operators, Matrix Product States, and ab initio Density Matrix Renormalization Group algorithms

    CERN Document Server

    Chan, Garnet Kin-Lic; Nakatani, Naoki; Li, Zhendong; White, Steven R

    2016-01-01

    Current descriptions of the ab initio DMRG algorithm use two superficially different languages: an older language of the renormalization group and renormalized operators, and a more recent language of matrix product states and matrix product operators. The same algorithm can appear dramatically different when written in the two different vocabularies. In this work, we carefully describe the translation between the two languages in several contexts. First, we describe how to efficiently implement the ab-initio DMRG sweep using a matrix product operator based code, and the equivalence to the original renormalized operator implementation. Next we describe how to implement the general matrix product operator/matrix product state algebra within a pure renormalized operator-based DMRG code. Finally, we discuss two improvements of the ab initio DMRG sweep algorithm motivated by matrix product operator language: Hamiltonian compression, and a sum over operators representation that allows for perfect computational par...

  16. 77 FR 1656 - Proposed Establishment of Restricted Areas R-5402, R-5403A, R-5403B, R-5403C, R-5403D, R-5403E, R...

    Science.gov (United States)

    2012-01-11

    ... Federal Aviation Administration 14 CFR Part 71 RIN 2120-AI92 Proposed Establishment of Restricted Areas R-5402, R-5403A, R- 5403B, R-5403C, R-5403D, R-5403E, R-5403F; Devils Lake, ND AGENCY: Federal Aviation... Areas R-5402, R-5403A, R-5403B, R- 5403C, R-5403D, R-5403E, R-5403F; Devils Lake, ND......

  17. Ceramic matrix composite article and process of fabricating a ceramic matrix composite article

    Science.gov (United States)

    Cairo, Ronald Robert; DiMascio, Paul Stephen; Parolini, Jason Robert

    2016-01-12

    A ceramic matrix composite article and a process of fabricating a ceramic matrix composite are disclosed. The ceramic matrix composite article includes a matrix distribution pattern formed by a manifold and ceramic matrix composite plies laid up on the matrix distribution pattern, includes the manifold, or a combination thereof. The manifold includes one or more matrix distribution channels operably connected to a delivery interface, the delivery interface configured for providing matrix material to one or more of the ceramic matrix composite plies. The process includes providing the manifold, forming the matrix distribution pattern by transporting the matrix material through the manifold, and contacting the ceramic matrix composite plies with the matrix material.

  18. A 9 × 9 Matrix Representation of Birman-Wenzl-Murakami Algebra and Berry Phase in Yang-Baxter System

    Institute of Scientific and Technical Information of China (English)

    GOU Li-Dan; XUE Kang; WANG Gang-Cheng

    2011-01-01

    We present a 9 × 9 S-matrix and E-matrix. A representation of specialized Birman-Wenzl-Murakami algebra is obtained. Starting from the given braid group representation S-matrix, we obtain the trigonometric solution of Yang-Baxter equation. A unitary matrix R(x,φ1,φ2) is generated via the Yang-Baxterization approach. Then we construct a Yang-Baxter Hamiltonian through the unitary matrixR(x, φ1, φ2). Berry phase of this Yang-Baxter system is investigated in detail.

  19. Relativistically extended Blanchard recurrence relation for hydrogenic matrix elements

    CERN Document Server

    Martínez y Romero, R P; Salas-Brito, A L

    2001-01-01

    General recurrence relations for arbitrary non-diagonal, radial hydrogenic matrix elements are derived in Dirac relativistic quantum mechanics. Our approach is based on a generalization of the second hypervirial method previously employed in the non-relativistic Schr\\"odinger case. A relativistic version of the Pasternack-Sternheimer relation is thence obtained in the diagonal (i.e. total angular momentum and parity the same) case, from such relation an expression for the relativistic virial theorem is deduced. To contribute to the utility of the relations, explicit expressions for the radial matrix elements of functions of the form $r^\\lambda$ and $\\beta r^\\lambda$ ---where $\\beta$ is a Dirac matrix--- are presented.

  20. Matrix Extension with Symmetry and Construction of Biorthogonal Multiwavelets

    CERN Document Server

    Zhuang, Xiaosheng

    2010-01-01

    Let $(\\pP,\\wt\\pP)$ be a pair of $r \\times s$ matrices of Laurent polynomials with symmetry such that $\\pP(z) \\wt\\pP^*(z)=I_\\mrow$ for all $z\\in \\CC \\bs \\{0\\}$ and both $\\pP$ and $\\wt\\pP$ have the same symmetry pattern that is compatible. The biorthogonal matrix extension problem with symmetry is to find a pair of $s \\times s$ square matrices $(\\pP_e,\\wt\\pP_e)$ of Laurent polynomials with symmetry such that $[I_r, \\mathbf{0}] \\pP_e =\\pP$ and $[I_r,\\mathbf{0}]\\wt\\pP_e=\\wt\\pP$ (that is, the submatrix of the first $r$ rows of $\\pP_e,\\wt\\pP_e$ is the given matrix $\\pP,\\wt\\pP$, respectively), $\\pP_e$ and $\\wt\\pP_e$ are biorthogonal satisfying $\\pP_e(z)\\wt\\pP_e^*(z)=I_\\mcol$ for all $z\\in \\CC \\bs \\{0\\}$, and $\\pP_e,\\wt\\pP_e$ have the same compatible symmetry. In this paper, we satisfactorily solve this matrix extension problem with symmetry by constructing the desired pair of extension matrices $(\\pP_e,\\wt\\pP_e)$ from the given pair of matrices $(\\pP,\\wt\\pP)$. Matrix extension plays an important role in many areas s...

  1. Matrix Theory of pp Waves

    CERN Document Server

    Michelson, J

    2004-01-01

    The Matrix Theory that has been proposed for various pp wave backgrounds is discussed. Particular emphasis is on the existence of novel nontrivial supersymmetric solutions of the Matrix Theory. These correspond to branes of various shapes (ellipsoidal, paraboloidal, and possibly hyperboloidal) that are unexpected from previous studies of branes in pp wave geometries.

  2. How to Study a Matrix

    Science.gov (United States)

    Jairam, Dharmananda; Kiewra, Kenneth A.; Kauffman, Douglas F.; Zhao, Ruomeng

    2012-01-01

    This study investigated how best to study a matrix. Fifty-three participants studied a matrix topically (1 column at a time), categorically (1 row at a time), or in a unified way (all at once). Results revealed that categorical and unified study produced higher: (a) performance on relationship and fact tests, (b) study material satisfaction, and…

  3. Machining of Metal Matrix Composites

    CERN Document Server

    2012-01-01

    Machining of Metal Matrix Composites provides the fundamentals and recent advances in the study of machining of metal matrix composites (MMCs). Each chapter is written by an international expert in this important field of research. Machining of Metal Matrix Composites gives the reader information on machining of MMCs with a special emphasis on aluminium matrix composites. Chapter 1 provides the mechanics and modelling of chip formation for traditional machining processes. Chapter 2 is dedicated to surface integrity when machining MMCs. Chapter 3 describes the machinability aspects of MMCs. Chapter 4 contains information on traditional machining processes and Chapter 5 is dedicated to the grinding of MMCs. Chapter 6 describes the dry cutting of MMCs with SiC particulate reinforcement. Finally, Chapter 7 is dedicated to computational methods and optimization in the machining of MMCs. Machining of Metal Matrix Composites can serve as a useful reference for academics, manufacturing and materials researchers, manu...

  4. Matrix Model Approach to Cosmology

    CERN Document Server

    Chaney, A; Stern, A

    2015-01-01

    We perform a systematic search for rotationally invariant cosmological solutions to matrix models, or more specifically the bosonic sector of Lorentzian IKKT-type matrix models, in dimensions $d$ less than ten, specifically $d=3$ and $d=5$. After taking a continuum (or commutative) limit they yield $d-1$ dimensional space-time surfaces, with an attached Poisson structure, which can be associated with closed, open or static cosmologies. For $d=3$, we obtain recursion relations from which it is possible to generate rotationally invariant matrix solutions which yield open universes in the continuum limit. Specific examples of matrix solutions have also been found which are associated with closed and static two-dimensional space-times in the continuum limit. The solutions provide for a matrix resolution of cosmological singularities. The commutative limit reveals other desirable features, such as a solution describing a smooth transition from an initial inflation to a noninflationary era. Many of the $d=3$ soluti...

  5. Matrix convolution operators on groups

    CERN Document Server

    Chu, Cho-Ho

    2008-01-01

    In the last decade, convolution operators of matrix functions have received unusual attention due to their diverse applications. This monograph presents some new developments in the spectral theory of these operators. The setting is the Lp spaces of matrix-valued functions on locally compact groups. The focus is on the spectra and eigenspaces of convolution operators on these spaces, defined by matrix-valued measures. Among various spectral results, the L2-spectrum of such an operator is completely determined and as an application, the spectrum of a discrete Laplacian on a homogeneous graph is computed using this result. The contractivity properties of matrix convolution semigroups are studied and applications to harmonic functions on Lie groups and Riemannian symmetric spaces are discussed. An interesting feature is the presence of Jordan algebraic structures in matrix-harmonic functions.

  6. Molecular events in matrix protein metabolism in the aging kidney.

    Science.gov (United States)

    Sataranatarajan, Kavithalakshmi; Feliers, Denis; Mariappan, Meenalakshmi M; Lee, Hak Joo; Lee, Myung Ja; Day, Robert T; Yalamanchili, Hima Bindu; Choudhury, Goutam G; Barnes, Jeffrey L; Van Remmen, Holly; Richardson, Arlan; Kasinath, Balakuntalam S

    2012-12-01

    We explored molecular events associated with aging-induced matrix changes in the kidney. C57BL6 mice were studied in youth, middle age, and old age. Albuminuria and serum cystatin C level (an index of glomerular filtration) increased with aging. Renal hypertrophy was evident in middle-aged and old mice and was associated with glomerulomegaly and increase in mesangial fraction occupied by extracellular matrix. Content of collagen types I and III and fibronectin was increased with aging; increment in their mRNA varied with the phase of aging. The content of ZEB1 and ZEB2, collagen type I transcription inhibitors, and their binding to the collagen type Iα2 promoter by ChIP assay also showed age-phase-specific changes. Lack of increase in mRNA and data from polysome assay suggested decreased degradation as a potential mechanism for kidney collagen type I accumulation in the middle-aged mice. These changes occurred with increment in TGFβ mRNA and protein and activation of its SMAD3 pathway; SMAD3 binding to the collagen type Iα2 promoter was also increased. TGFβ-regulated microRNAs (miRs) exhibited selective regulation. The renal cortical content of miR-21 and miR-200c, but not miR-192, miR-200a, or miR-200b, was increased with aging. Increased miR-21 and miR-200c contents were associated with reduced expression of their targets, Sprouty-1 and ZEB2, respectively. These data show that aging is associated with complex molecular events in the kidney that are already evident in the middle age and progress to old age. Age-phase-specific regulation of matrix protein synthesis occurs and involves matrix protein-specific transcriptional and post-transcriptional mechanisms. © 2012 The Authors Aging Cell © 2012 Blackwell Publishing Ltd/Anatomical Society of Great Britain and Ireland.

  7. Construction of $R$-matrices for symmetric tensor representations related to $U_{q}(\\widehat{sl_{n}})$

    CERN Document Server

    Bosnjak, Gary

    2016-01-01

    In this paper we construct a new factorized representation of the $R$-matrix related to the affine algebra $U_{q}(\\widehat{sl_{n}})$ for symmetric tensor representations with arbitrary weights. Using the 3D approach we obtain explicit formulas for the matrix elements of the $R$-matrix and give a simple proof that a "twisted" $R$-matrix is stochastic. We also discuss symmetries of the $R$-matrix, its degenerations and compare our formulas with other results available in the literature.

  8. Manufacturing Titanium Metal Matrix Composites by Consolidating Matrix Coated Fibres

    Institute of Scientific and Technical Information of China (English)

    Hua-Xin PENG

    2005-01-01

    Titanium metal matrix composites (TiMMCs) reinforced by continuous silicon carbide fibres are being developed for aerospace applications. TiMMCs manufactured by the consolidation of matrix-coated fibre (MCF) method offer optimum properties because of the resulting uniform fibre distribution, minimum fibre damage and fibre volume fraction control. In this paper, the consolidation of Ti-6Al-4V matrix-coated SiC fibres during vacuum hot pressing has been investigated. Experiments were carried out on multi-ply MCFs under vacuum hot pressing (VHP). In contrast to most of existing studies, the fibre arrangement has been carefully controlled either in square or hexagonal arraysthroughout the consolidated sample. This has enabled the dynamic consolidation behaviour of MCFs to be demonstrated by eliminating the fibre re-arrangement during the VHP process. The microstructural evolution of the matrix coating was reported and the deformation mechanisms involved were discussed.

  9. Nano-Textured Fiber Coatings for Energy Absorbing Polymer Matrix Composite Materials

    Science.gov (United States)

    2004-12-01

    NANO-TEXTURED FIBER COATINGS FOR ENERGY ABSORBING POLYMER MATRIX COMPOSITE MATERIALS R. E. Jensen and S. H. McKnight Army Research Laboratory...Textured Fiber Coatings For Energy Absorbing Polymer Matrix Composite Materials 5a. CONTRACT NUMBER 5b. GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER 6

  10. An explicit solution to the matrix equation AV+BW=EV J

    Institute of Scientific and Technical Information of China (English)

    Aiguo WU; Guangren DUAN; Bin ZHOU

    2007-01-01

    In this note,the matrix equation AV+BW=EV J is considered,where E,A and B are given matrices of appropriate dimensions,J is an arbitrarily given Jordan matrix,V and W are the matrices to be determined.Firstly,a right factorization of(sE-A)-1 B is given based on the Leverriver algorithm for descriptor systems.Then based on this factorization and a proposed parametric solution,an alternative parametric solution to this matrix equation is established in terms of the R-controllability matrix of(E,A,B),the generalized symmetric operator and the observability matrix associated with the Jordan matrix J and a free parameter matrix.The proposed results provide great convenience for many analysis and design problems.Moreover,some equivalent forms are proposed.A numerical example is employed to illustrate the effect of the proposed approach.

  11. New pole placement algorithm - Polynomial matrix approach

    Science.gov (United States)

    Shafai, B.; Keel, L. H.

    1990-01-01

    A simple and direct pole-placement algorithm is introduced for dynamical systems having a block companion matrix A. The algorithm utilizes well-established properties of matrix polynomials. Pole placement is achieved by appropriately assigning coefficient matrices of the corresponding matrix polynomial. This involves only matrix additions and multiplications without requiring matrix inversion. A numerical example is given for the purpose of illustration.

  12. High temperature polymer matrix composites

    Science.gov (United States)

    Serafini, Tito T. (Editor)

    1987-01-01

    These are the proceedings of the High Temperature Polymer Matrix Composites Conference held at the NASA Lewis Research Center on March 16 to 18, 1983. The purpose of the conference is to provide scientists and engineers working in the field of high temperature polymer matrix composites an opportunity to review, exchange, and assess the latest developments in this rapidly expanding area of materials technology. Technical papers are presented in the following areas: (1) matrix development; (2) adhesive development; (3) Characterization; (4) environmental effects; and (5) applications.

  13. Matrix Elements for Hylleraas CI

    Science.gov (United States)

    Harris, Frank E.

    The limitation to at most a single interelectron distance in individual configurations of a Hylleraas-type multiconfiguration wave function restricts significantly the types of integrals occurring in matrix elements for energy calculations, but even then if the formulation is not handled efficiently the angular parts of these integrals escalate to create expressions of great complexity. This presentation reviews ways in which the angular-momentum calculus can be employed to systematize and simplify the matrix element formulas, particularly those for the kinetic-energy matrix elements.

  14. Computing generalized inverses using LU factorization of matrix product

    CERN Document Server

    Stanimirović,; Tasić,; B, M; 10.1080/00207160701582077

    2011-01-01

    An algorithm for computing {2, 3}, {2, 4}, {1, 2, 3}, {1, 2, 4} -inverses and the Moore-Penrose inverse of a given rational matrix A is established. Classes A(2, 3)s and A(2, 4)s are characterized in terms of matrix products (R*A)+R* and T*(AT*)+, where R and T are rational matrices with appropriate dimensions and corresponding rank. The proposed algorithm is based on these general representations and the Cholesky factorization of symmetric positive matrices. The algorithm is implemented in programming languages MATHEMATICA and DELPHI, and illustrated via examples. Numerical results of the algorithm, corresponding to the Moore-Penrose inverse, are compared with corresponding results obtained by several known methods for computing the Moore-Penrose inverse.

  15. General Randic matrix and general Randi'c energy

    Directory of Open Access Journals (Sweden)

    Ran Gu;

    2014-09-01

    Full Text Available Let $G$ be a simple graph with vertex set $V(G = {v_1, v_2,ldots , v_n}$ and $d_i$ the degree of its vertex $v_i$, $i = 1, 2, cdots, n$. Inspired by the Randi'c matrix and the general Randi'c index of a graph, we introduce the concept of general Randi'c matrix $textbf{R}_alpha$ of $G$, which is defined by $(textbf{R}_alpha_{i,j}=(d_id_j^alpha$ if $v_i$ and $v_j$ are adjacent, and zero otherwise. Similarly, the general Randi'{c} eigenvalues are the eigenvalues of the general Randi'{c} matrix, the greatest general Randi'{c} eigenvalue is the general Randi'{c} spectral radius of $G$, and the general Randi'{c} energy is the sum of the absolute values of the general Randi'{c} eigenvalues. In this paper, we prove some properties of the general Randi'c matrix and obtain lower and upper bounds for general Randi'{c} energy, also, we get some lower bounds for general Randi'{c} spectral radius of a connected graph. Moreover, we give a new sharp upper bound for the general Randi'{c} energy when $alpha=-1/2$.[2mm] noindent{bf Keywords:} general Randi'c matrix, general Randi'c energy, eigenvalues, spectral radius.

  16. Matrix product operators, matrix product states, and ab initio density matrix renormalization group algorithms

    Science.gov (United States)

    Chan, Garnet Kin-Lic; Keselman, Anna; Nakatani, Naoki; Li, Zhendong; White, Steven R.

    2016-07-01

    Current descriptions of the ab initio density matrix renormalization group (DMRG) algorithm use two superficially different languages: an older language of the renormalization group and renormalized operators, and a more recent language of matrix product states and matrix product operators. The same algorithm can appear dramatically different when written in the two different vocabularies. In this work, we carefully describe the translation between the two languages in several contexts. First, we describe how to efficiently implement the ab initio DMRG sweep using a matrix product operator based code, and the equivalence to the original renormalized operator implementation. Next we describe how to implement the general matrix product operator/matrix product state algebra within a pure renormalized operator-based DMRG code. Finally, we discuss two improvements of the ab initio DMRG sweep algorithm motivated by matrix product operator language: Hamiltonian compression, and a sum over operators representation that allows for perfect computational parallelism. The connections and correspondences described here serve to link the future developments with the past and are important in the efficient implementation of continuing advances in ab initio DMRG and related algorithms.

  17. Matrix product operators, matrix product states, and ab initio density matrix renormalization group algorithms.

    Science.gov (United States)

    Chan, Garnet Kin-Lic; Keselman, Anna; Nakatani, Naoki; Li, Zhendong; White, Steven R

    2016-07-01

    Current descriptions of the ab initio density matrix renormalization group (DMRG) algorithm use two superficially different languages: an older language of the renormalization group and renormalized operators, and a more recent language of matrix product states and matrix product operators. The same algorithm can appear dramatically different when written in the two different vocabularies. In this work, we carefully describe the translation between the two languages in several contexts. First, we describe how to efficiently implement the ab initio DMRG sweep using a matrix product operator based code, and the equivalence to the original renormalized operator implementation. Next we describe how to implement the general matrix product operator/matrix product state algebra within a pure renormalized operator-based DMRG code. Finally, we discuss two improvements of the ab initio DMRG sweep algorithm motivated by matrix product operator language: Hamiltonian compression, and a sum over operators representation that allows for perfect computational parallelism. The connections and correspondences described here serve to link the future developments with the past and are important in the efficient implementation of continuing advances in ab initio DMRG and related algorithms.

  18. GoM Diet Matrix

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This data set was taken from CRD 08-18 at the NEFSC. Specifically, the Gulf of Maine diet matrix was developed for the EMAX exercise described in that center...

  19. Linear connections on matrix geometries

    CERN Document Server

    Madore, J; Mourad, J; Madore, John; Masson, Thierry; Mourad, Jihad

    1994-01-01

    A general definition of a linear connection in noncommutative geometry has been recently proposed. Two examples are given of linear connections in noncommutative geometries which are based on matrix algebras. They both possess a unique metric connection.

  20. Matrix Quantum Mechanics from Qubits

    CERN Document Server

    Hartnoll, Sean A; Mazenc, Edward A

    2016-01-01

    We introduce a transverse field Ising model with order N^2 spins interacting via a nonlocal quartic interaction. The model has an O(N,Z), hyperoctahedral, symmetry. We show that the large N partition function admits a saddle point in which the symmetry is enhanced to O(N). We further demonstrate that this `matrix saddle' correctly computes large N observables at weak and strong coupling. The matrix saddle undergoes a continuous quantum phase transition at intermediate couplings. At the transition the matrix eigenvalue distribution becomes disconnected. The critical excitations are described by large N matrix quantum mechanics. At the critical point, the low energy excitations are waves propagating in an emergent 1+1 dimensional spacetime.

  1. Matrix analysis of electrical machinery

    CERN Document Server

    Hancock, N N

    2013-01-01

    Matrix Analysis of Electrical Machinery, Second Edition is a 14-chapter edition that covers the systematic analysis of electrical machinery performance. This edition discusses the principles of various mathematical operations and their application to electrical machinery performance calculations. The introductory chapters deal with the matrix representation of algebraic equations and their application to static electrical networks. The following chapters describe the fundamentals of different transformers and rotating machines and present torque analysis in terms of the currents based on the p

  2. Accelerating R with high performance linear algebra libraries

    Directory of Open Access Journals (Sweden)

    Bogdan Oancea

    2015-09-01

    Full Text Available Linear algebra routines are basic building blocks for the statistical software. In this paper we analyzed how can we improve R performance for matrix computations. We benchmarked few matrix operations using the standard linear algebra libraries included in the R distribution and high performance libraries like OpenBLAS, GotoBLAS and MKL. Our tests showed the best results are obtained with the MKL library, the other two libraries having similar performances, but lower than MKL.

  3. System performance with R407A, R407B, R407C compared to R22

    DEFF Research Database (Denmark)

    Knudsen, Hans Jørgen Høgaard

    1997-01-01

    The article presents the results obtained by substituting R22 with mixture of R32/R125/R134A (R407A, R407B and R407C) in an existing refrigeration plant. Cooling capacity, coefficient of performance and heat transfer coefficient in the evaporator have been measured.The results show that for R407C...

  4. SVD row or column symmetric matrix

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    A new architecture for row or column symmetric matrix called extended matrix is defined, and a precise correspondence of the singular values and singular vectors between the extended matrix and its original (namely, the mother matrix) is derived. As an illustration of potential, we show that, for a class of extended matrices, the singular value decomposition using the mother matrix rather than the extended matrix per se can save the CPU time and memory without loss of numerical precision.

  5. Integral complete r-partite graphs

    NARCIS (Netherlands)

    Wang, Ligong; Li, Xueliang; Hoede, C.

    2004-01-01

    A graph is called integral if all the eigenvalues of its adjacency matrix are integers. In this paper, we give a useful sufficient and necessary condition for complete r-partite graphs to be integral, from which we can construct infinite many new classes of such integral graphs. It is proved that

  6. Calculation of the matrix elements of the Coulomb interaction involving relativistic hydrogenic wave functions

    Science.gov (United States)

    Sarkadi, L.

    2017-03-01

    The program MTRDCOUL [1] calculates the matrix elements of the Coulomb interaction between a charged particle and an atomic electron, ∫ ψf∗ (r) ∣ R - r∣-1ψi(r) d r. Bound-free transitions are considered, and relativistic hydrogenic wave functions are used. In this revised version a bug discovered in the F3Y CPC Program Library subprogram [2] is fixed.

  7. Minimal Realizations of Supersymmetry for Matrix Hamiltonians

    CERN Document Server

    Andrianov, Alexandr A

    2014-01-01

    The notions of weak and strong minimizability of a matrix intertwining operator are introduced. Criterion of strong minimizability of a matrix intertwining operator is revealed. Criterion and sufficient condition of existence of a constant symmetry matrix for a matrix Hamiltonian are presented. A method of constructing of a matrix Hamiltonian with a given constant symmetry matrix in terms of a set of arbitrary scalar functions and eigen- and associated vectors of this matrix is offered. Examples of constructing of $2\\times2$ matrix Hamiltonians with given symmetry matrices for the cases of different structure of Jordan form of these matrices are elucidated.

  8. Sparse Planar Array Synthesis Using Matrix Enhancement and Matrix Pencil

    Directory of Open Access Journals (Sweden)

    Mei-yan Zheng

    2013-01-01

    Full Text Available The matrix enhancement and matrix pencil (MEMP plays important roles in modern signal processing applications. In this paper, MEMP is applied to attack the problem of two-dimensional sparse array synthesis. Firstly, the desired array radiation pattern, as the original pattern for approximating, is sampled to form an enhanced matrix. After performing the singular value decomposition (SVD and discarding the insignificant singular values according to the prior approximate error, the minimum number of elements can be obtained. Secondly, in order to obtain the eigenvalues, the generalized eigen-decomposition is employed on the approximate matrix, which is the optimal low-rank approximation of the enhanced matrix corresponding to sparse planar array, and then the ESPRIT algorithm is utilized to pair the eigenvalues related to each dimension of the planar array. Finally, element positions and excitations of the sparse planar array are calculated according to the correct pairing of eigenvalues. Simulation results are presented to illustrate the effectiveness of the proposed approach.

  9. Calculation of the Two-body T-matrix in Configuration Space

    CERN Document Server

    Rawitscher, George

    2007-01-01

    A spectral integral method (IEM) for solving the two-body Schroedinger equation in configuration space is generalized to the calculation of the corresponding T-matrix. It is found that the desirable features of the IEM, such as the economy of mesh-points for a given required accuracy, are carried over also to the solution of the T-matrix. However the algorithm is considerably more complex, because the T-matrix is a function of two variables r and r', rather than only one variable r, and has a slope discontinuity at r=r'. For a simple exponential potential an accuracy of 7 significant figures is achieved, with the number N of Chebyshev support points in each partition equal to 17. For a potential with a large repulsive core, such as the potential between two He atoms, the accuracy decreases to 4 significant figures, but is restored to 7 if N is increased to 65.

  10. Abnormal Structure of Fermion Mixings in a Seesaw Quark Mass Matrix Model

    CERN Document Server

    Koide, Y

    1997-01-01

    It is pointed out that in a seesaw quark mass matrix model which yields a singular enhancement of the top-quark mass, the right-handed fermion-mixing matrix U_R^u for the up-quark sector has a peculiar structure in contrast to the left-handed one U_L^u. As an example of the explicit structures of U_L^u and U_R^u, a case in which the heavy fermion mass matrix M_F is given by a form [(unit matrix)+(rank-one matrix)] is investigated. As a consequence, one finds observable signatures at projected high energy accelerators like the production of a fourth heavy quark family.

  11. The Astrobiology Matrix and the "Drake Matrix" in Education

    Science.gov (United States)

    Mizser, A.; Kereszturi, A.

    2003-01-01

    We organized astrobiology lectures in the Eotvos Lorand University of Sciences and the Polaris Observatory in 2002. We present here the "Drake matrix" for the comparison of the astrobiological potential of different bodies [1], and astrobiology matrix for the visualization of the interdisciplinary connections between different fields of astrobiology. Conclusion: In Hungary it is difficult to integrate astrobiology in the education system but the great advantage is that it can connect different scientific fields and improve the view of students. We would like to get in contact with persons and organizations who already have experience in the education of astrobiology.

  12. A survey of matrix theory and matrix inequalities

    CERN Document Server

    Marcus, Marvin

    2010-01-01

    Written for advanced undergraduate students, this highly regarded book presents an enormous amount of information in a concise and accessible format. Beginning with the assumption that the reader has never seen a matrix before, the authors go on to provide a survey of a substantial part of the field, including many areas of modern research interest.Part One of the book covers not only the standard ideas of matrix theory, but ones, as the authors state, ""that reflect our own prejudices,"" among them Kronecker products, compound and induced matrices, quadratic relations, permanents, incidence

  13. Polarized Matrix Infrared Spectra of Cyclopentadienone

    Science.gov (United States)

    Ormond, Thomas K.; Scheer, Adam M.; Ellison, G. Barney; Nimlos, Mark R.; Daily, John W.; Stanton, John F.

    2012-06-01

    We are developing a resistively-heated SiC μtubular reactor with a 100 μsec residence time to study the thermal cracking of biomass monomers. The decomposition products are identified by two independent techniques: 118.2 nm VUV photoionization mass spectrometry (PIMS) and matrix infrared spectroscopy. Many lignins thermally crack to produce cyclopentadienone (m/z 80) and its derivatives. Subsequent decomposition of these cyclopentadienones results in formation of substituted acetylenes which are known precursors to polycyclic aromatic hydrocarbons and soot. Due to its anitaromatic character, cyclopentadienone is highly reactive and presents an interesting spectroscopic system. Pyrolysis of {o}-phenylene sulfite (m/z 156) is a convenient precursor for cyclopentadienone. In this work we report the polarized matrix infrared absorption spectra of cyclopentadienone and d_4-cyclopentadienone. The PIMS results corroborate the thermal decomposition steps of phenylene sulfite. {Ab initio} coupled-cluster anharmonic force field calculations are used to guide the vibrational assignments. A. M. Scheer, C. Murkarakate, D. J. Robichaud, M. R. Nimlos, and G. B. Ellison J. Phys. Chem. A 115, 13381 (2011)

  14. Matrix factorizations and elliptic fibrations

    Science.gov (United States)

    Omer, Harun

    2016-09-01

    I use matrix factorizations to describe branes at simple singularities of elliptic fibrations. Each node of the corresponding Dynkin diagrams of the ADE-type singularities is associated with one indecomposable matrix factorization which can be deformed into one or more factorizations of lower rank. Branes with internal fluxes arise naturally as bound states of the indecomposable factorizations. Describing branes in such a way avoids the need to resolve singularities. This paper looks at gauge group breaking from E8 fibers down to SU (5) fibers due to the relevance of such fibrations for local F-theory GUT models. A purpose of this paper is to understand how the deformations of the singularity are understood in terms of its matrix factorizations. By systematically factorizing the elliptic fiber equation, this paper discusses geometries which are relevant for building semi-realistic local models. In the process it becomes evident that breaking patterns which are identical at the level of the Kodaira type of the fibers can be inequivalent at the level of matrix factorizations. Therefore the matrix factorization picture supplements information which the conventional less detailed descriptions lack.

  15. Octonionic matrix representation and electromagnetism

    Energy Technology Data Exchange (ETDEWEB)

    Chanyal, B. C. [Kumaun University, S. S. J. Campus, Almora (India)

    2014-12-15

    Keeping in mind the important role of octonion algebra, we have obtained the electromagnetic field equations of dyons with an octonionic 8 x 8 matrix representation. In this paper, we consider the eight - dimensional octonionic space as a combination of two (external and internal) four-dimensional spaces for the existence of magnetic monopoles (dyons) in a higher-dimensional formalism. As such, we describe the octonion wave equations in terms of eight components from the 8 x 8 matrix representation. The octonion forms of the generalized potential, fields and current source of dyons in terms of 8 x 8 matrix are discussed in a consistent manner. Thus, we have obtained the generalized Dirac-Maxwell equations of dyons from an 8x8 matrix representation of the octonion wave equations in a compact and consistent manner. The generalized Dirac-Maxwell equations are fully symmetric Maxwell equations and allow for the possibility of magnetic charges and currents, analogous to electric charges and currents. Accordingly, we have obtained the octonionic Dirac wave equations in an external field from the matrix representation of the octonion-valued potentials of dyons.

  16. Matrix factorizations and elliptic fibrations

    Directory of Open Access Journals (Sweden)

    Harun Omer

    2016-09-01

    Full Text Available I use matrix factorizations to describe branes at simple singularities of elliptic fibrations. Each node of the corresponding Dynkin diagrams of the ADE-type singularities is associated with one indecomposable matrix factorization which can be deformed into one or more factorizations of lower rank. Branes with internal fluxes arise naturally as bound states of the indecomposable factorizations. Describing branes in such a way avoids the need to resolve singularities. This paper looks at gauge group breaking from E8 fibers down to SU(5 fibers due to the relevance of such fibrations for local F-theory GUT models. A purpose of this paper is to understand how the deformations of the singularity are understood in terms of its matrix factorizations. By systematically factorizing the elliptic fiber equation, this paper discusses geometries which are relevant for building semi-realistic local models. In the process it becomes evident that breaking patterns which are identical at the level of the Kodaira type of the fibers can be inequivalent at the level of matrix factorizations. Therefore the matrix factorization picture supplements information which the conventional less detailed descriptions lack.

  17. Matrix dilaton-axion for heterotic string in three dimensions

    CERN Document Server

    Kechkin, O V

    1995-01-01

    New and surprisingly simple representation is found for the heterotic string bosonic effective action in three dimensions in terms of complex potentials. The system is presented as a K\\"ahler \\sigma--model using complex symmetric 2\\times 2 matrix (matrix dilaton--axion) which depends linearly on three Ernst--type potentials and transforms under U--duality via matrix valued SL(2,R). Two discrete automorphisms relating ten isometries of the target space (U--duality transformations) are found and used to generate the non--trivial Ehlers--Harrison sector by a map from the trivial gauge sector. Finite transformations are obtained in a simple form in terms of complex potentials. New solution generating technique is used to construct EMDA double--Kerr solution.

  18. Conductance matrix of multiterminal semiconductor devices with edge channels

    Energy Technology Data Exchange (ETDEWEB)

    Danilovskii, E. Yu., E-mail: danilovskii@mail.ioffe.ru; Bagraev, N. T. [Russian Academy of Sciences, Ioffe Physical-Technical Institute (Russian Federation)

    2014-12-15

    A method for determining the conductance matrix of multiterminal semiconductor structures with edge channels is proposed. The method is based on the solution of a system of linear algebraic equations based on Kirchhoff equations, made up of potential differences U{sub ij} measured at stabilized currents I{sub kl}, where i, j, k, l are terminal numbers. The matrix obtained by solving the system of equations completely describes the structure under study, reflecting its configuration and homogeneity. This method can find wide application when using the known Landauer-Buttiker formalism to analyze carrier transport in the quantum Hall effect and quantum spin Hall effect modes. Within the proposed method, the contribution of the contact area resistances R{sub c} to the formation of conductance matrix elements is taken into account. The possibilities of practical application of the results obtained in developing analog cryptographic devices are considered.

  19. The super period matrix with Ramond punctures in the supergravity formulation

    Directory of Open Access Journals (Sweden)

    Eric D'Hoker

    2015-10-01

    Full Text Available In a very recent preprint, Witten showed how to construct a g|r×g|r super period matrix for super Riemann surfaces of genus g with 2r Ramond punctures, which is symmetric in the Z2 graded sense. He also showed how it can be applied to analyze supersymmetry breaking in string compactifications which are supersymmetric at tree-level. Witten's construction is in the purely holomorphic formulation of super Riemann surfaces. In this paper, a construction is given in the formulation of two-dimensional supergravity. The variations of the super period matrix with respect to supermoduli deformations are also given, as well as an explicit illustration of how the super period matrix with two Ramond punctures would emerge from a degeneration of the super period matrix without punctures in higher genus.

  20. UpSetR: an R package for the visualization of intersecting sets and their properties.

    Science.gov (United States)

    Conway, Jake R; Lex, Alexander; Gehlenborg, Nils

    2017-09-15

    Venn and Euler diagrams are a popular yet inadequate solution for quantitative visualization of set intersections. A scalable alternative to Venn and Euler diagrams for visualizing intersecting sets and their properties is needed. We developed UpSetR, an open source R package that employs a scalable matrix-based visualization to show intersections of sets, their size, and other properties. UpSetR is available at https://github.com/hms-dbmi/UpSetR/ and released under the MIT License. A Shiny app is available at https://gehlenborglab.shinyapps.io/upsetr/ . nils@hms.harvard.edu. Supplementary data are available at Bioinformatics online.

  1. Some recurrence relations among the radial matrix elements for the relativistic hydrogenic atoms

    Energy Technology Data Exchange (ETDEWEB)

    Dong Shihai [Programa de Ingenieria Molecular, Instituto Mexicano del Petroleo, Lazaro Cardenas 152, 07730 Mexico, D.F. (Mexico)]. E-mail: dongsh2@yahoo.com; Chen Changyuan [Department of Physics, Yancheng Teachers College, Yancheng 224002 (China)]. E-mail: yctcccy@tom.com; Lozada-Cassou, M. [Programa de Ingenieria Molecular, Instituto Mexicano del Petroleo, Lazaro Cardenas 152, 07730 Mexico, D.F. (Mexico)]. E-mail: marcelo@www.imp.mx

    2004-12-06

    The general calculation formula for the matrix elements r{sup k} vertical bar n{sub 2}'l{sub 2}'> is derived. We present a very lengthy and complicated general recurrence relation among the matrix elements of r{sup k}. Some useful recurrence relations among the matrix elements are studied in some special cases, which include the matrix elements of rk calculated in the same state vertical bar n'l'>, the different states vertical bar n'l{sub 1}'> and vertical bar n'l{sub 2}'>, the k= vertical bar l{sub 1}-l{sub 2} vertical bar and k=l{sub 1}+l{sub 2}+1. On the basis of the integral properties of the product of two associated Laguerre polynomials multiplied by a weight factor, we obtain a new recurrence relation between the matrix elements r-{sup k-2} vertical bar n'l{sub 2}'> and r{sup k-1} vertical bar n'l{sub 2}'>. Another recurrence relation involving the matrix elements of logarithmic functions ln(2r/{alpha}'n') ({alpha}'=a{sub 0}mc{sup 2}/ZE{sub n}') is investigated.

  2. On Geometry and Matrix Models

    CERN Document Server

    Dijkgraaf, R; Dijkgraaf, Robbert; Vafa, Cumrun

    2002-01-01

    We point out two extensions of the relation between matrix models, topological strings and N=1 supersymmetric gauge theories. First, we note that by considering double scaling limits of unitary matrix models one can obtain large N duals of the local Calabi-Yau geometries that engineer N=2 gauge theories. In particular, a double scaling limit of the Gross-Witten one-plaquette lattice model gives the SU(2) Seiberg-Witten solution, including its induced gravitational corrections. Secondly, we point out that the effective superpotential terms for N=1 ADE quiver gauge theories is similarly computed by large multi-matrix models, that have been considered in the context of ADE minimal models on random surfaces. The associated spectral curves are multiple branched covers obtained as Virasoro and W-constraints of the partition function.

  3. On geometry and matrix models

    Science.gov (United States)

    Dijkgraaf, Robbert; Vafa, Cumrun

    2002-11-01

    We point out two extensions of the relation between matrix models, topological strings and N=1 supersymmetric gauge theories. First, we note that by considering double scaling limits of unitary matrix models one can obtain large- N duals of the local Calabi-Yau geometries that engineer N=2 gauge theories. In particular, a double scaling limit of the Gross-Witten one-plaquette lattice model gives the SU(2) Seiberg-Witten solution, including its induced gravitational corrections. Secondly, we point out that the effective superpotential terms for N=1 ADE quiver gauge theories is similarly computed by large- N multi-matrix models, that have been considered in the context of ADE minimal models on random surfaces. The associated spectral curves are multiple branched covers obtained as Virasoro and W-constraints of the partition function.

  4. On geometry and matrix models

    Energy Technology Data Exchange (ETDEWEB)

    Dijkgraaf, Robbert E-mail: rhd@science.uva.nl; Vafa, Cumrun

    2002-11-11

    We point out two extensions of the relation between matrix models, topological strings and N=1 supersymmetric gauge theories. First, we note that by considering double scaling limits of unitary matrix models one can obtain large-N duals of the local Calabi-Yau geometries that engineer N=2 gauge theories. In particular, a double scaling limit of the Gross-Witten one-plaquette lattice model gives the SU(2) Seiberg-Witten solution, including its induced gravitational corrections. Secondly, we point out that the effective superpotential terms for N=1 ADE quiver gauge theories is similarly computed by large-N multi-matrix models, that have been considered in the context of ADE minimal models on random surfaces. The associated spectral curves are multiple branched covers obtained as Virasoro and W-constraints of the partition function.

  5. Lectures on matrix field theory

    CERN Document Server

    Ydri, Badis

    2017-01-01

    These lecture notes provide a systematic introduction to matrix models of quantum field theories with non-commutative and fuzzy geometries. The book initially focuses on the matrix formulation of non-commutative and fuzzy spaces, followed by a description of the non-perturbative treatment of the corresponding field theories. As an example, the phase structure of non-commutative phi-four theory is treated in great detail, with a separate chapter on the multitrace approach. The last chapter offers a general introduction to non-commutative gauge theories, while two appendices round out the text. Primarily written as a self-study guide for postgraduate students – with the aim of pedagogically introducing them to key analytical and numerical tools, as well as useful physical models in applications – these lecture notes will also benefit experienced researchers by providing a reference guide to the fundamentals of non-commutative field theory with an emphasis on matrix models and fuzzy geometries.

  6. Noncommutative spaces from matrix models

    Science.gov (United States)

    Lu, Lei

    Noncommutative (NC) spaces commonly arise as solutions to matrix model equations of motion. They are natural generalizations of the ordinary commutative spacetime. Such spaces may provide insights into physics close to the Planck scale, where quantum gravity becomes relevant. Although there has been much research in the literature, aspects of these NC spaces need further investigation. In this dissertation, we focus on properties of NC spaces in several different contexts. In particular, we study exact NC spaces which result from solutions to matrix model equations of motion. These spaces are associated with finite-dimensional Lie-algebras. More specifically, they are two-dimensional fuzzy spaces that arise from a three-dimensional Yang-Mills type matrix model, four-dimensional tensor-product fuzzy spaces from a tensorial matrix model, and Snyder algebra from a five-dimensional tensorial matrix model. In the first part of this dissertation, we study two-dimensional NC solutions to matrix equations of motion of extended IKKT-type matrix models in three-space-time dimensions. Perturbations around the NC solutions lead to NC field theories living on a two-dimensional space-time. The commutative limit of the solutions are smooth manifolds which can be associated with closed, open and static two-dimensional cosmologies. One particular solution is a Lorentzian fuzzy sphere, which leads to essentially a fuzzy sphere in the Minkowski space-time. In the commutative limit, this solution leads to an induced metric that does not have a fixed signature, and have a non-constant negative scalar curvature, along with singularities at two fixed latitudes. The singularities are absent in the matrix solution which provides a toy model for resolving the singularities of General relativity. We also discussed the two-dimensional fuzzy de Sitter space-time, which has irreducible representations of su(1,1) Lie-algebra in terms of principal, complementary and discrete series. Field

  7. Supersymmetry in random matrix theory

    Energy Technology Data Exchange (ETDEWEB)

    Kieburg, Mario

    2010-05-04

    I study the applications of supersymmetry in random matrix theory. I generalize the supersymmetry method and develop three new approaches to calculate eigenvalue correlation functions. These correlation functions are averages over ratios of characteristic polynomials. In the first part of this thesis, I derive a relation between integrals over anti-commuting variables (Grassmann variables) and differential operators with respect to commuting variables. With this relation I rederive Cauchy- like integral theorems. As a new application I trace the supermatrix Bessel function back to a product of two ordinary matrix Bessel functions. In the second part, I apply the generalized Hubbard-Stratonovich transformation to arbitrary rotation invariant ensembles of real symmetric and Hermitian self-dual matrices. This extends the approach for unitarily rotation invariant matrix ensembles. For the k-point correlation functions I derive supersymmetric integral expressions in a unifying way. I prove the equivalence between the generalized Hubbard-Stratonovich transformation and the superbosonization formula. Moreover, I develop an alternative mapping from ordinary space to superspace. After comparing the results of this approach with the other two supersymmetry methods, I obtain explicit functional expressions for the probability densities in superspace. If the probability density of the matrix ensemble factorizes, then the generating functions exhibit determinantal and Pfaffian structures. For some matrix ensembles this was already shown with help of other approaches. I show that these structures appear by a purely algebraic manipulation. In this new approach I use structures naturally appearing in superspace. I derive determinantal and Pfaffian structures for three types of integrals without actually mapping onto superspace. These three types of integrals are quite general and, thus, they are applicable to a broad class of matrix ensembles. (orig.)

  8. Polychoric/Tetrachoric Matrix or Pearson Matrix? A methodological study

    Directory of Open Access Journals (Sweden)

    Dominguez Lara, Sergio Alexis

    2014-04-01

    Full Text Available The use of product-moment correlation of Pearson is common in most studies in factor analysis in psychology, but it is known that this statistic is only applicable when the variables related are in interval scale and normally distributed, and when are used in ordinal data may to produce a distorted correlation matrix . Thus is a suitable option using polychoric/tetrachoric matrices in item-level factor analysis when the items are in level measurement nominal or ordinal. The aim of this study was to show the differences in the KMO, Bartlett`s Test and Determinant of the Matrix, percentage of variance explained and factor loadings in depression trait scale of Depression Inventory Trait - State and the Neuroticism dimension of the short form of the Eysenck Personality Questionnaire -Revised, regarding the use of matrices polychoric/tetrachoric matrices and Pearson. These instruments was analyzed with different extraction methods (Maximum Likelihood, Minimum Rank Factor Analysis, Unweighted Least Squares and Principal Components, keeping constant the rotation method Promin were analyzed. Were observed differences regarding sample adequacy measures, as well as with respect to the explained variance and the factor loadings, for solutions having as polychoric/tetrachoric matrix. So it can be concluded that the polychoric / tetrachoric matrix give better results than Pearson matrices when it comes to item-level factor analysis using different methods.

  9. Symmetries and Interactions in Matrix String Theory

    NARCIS (Netherlands)

    Hacquebord, F.H.

    1999-01-01

    This PhD-thesis reviews matrix string theory and recent developments therein. The emphasis is put on symmetries, interactions and scattering processes in the matrix model. We start with an introduction to matrix string theory and a review of the orbifold model that flows out of matrix string theory

  10. Minimal realizations of supersymmetry for matrix Hamiltonians

    Energy Technology Data Exchange (ETDEWEB)

    Andrianov, Alexander A., E-mail: andrianov@icc.ub.edu; Sokolov, Andrey V., E-mail: avs_avs@rambler.ru

    2015-02-06

    The notions of weak and strong minimizability of a matrix intertwining operator are introduced. Criterion of strong minimizability of a matrix intertwining operator is revealed. Criterion and sufficient condition of existence of a constant symmetry matrix for a matrix Hamiltonian are presented. A method of constructing of a matrix Hamiltonian with a given constant symmetry matrix in terms of a set of arbitrary scalar functions and eigen- and associated vectors of this matrix is offered. Examples of constructing of 2×2 matrix Hamiltonians with given symmetry matrices for the cases of different structure of Jordan form of these matrices are elucidated. - Highlights: • Weak and strong minimization of a matrix intertwining operator. • Criterion of strong minimizability from the right of a matrix intertwining operator. • Conditions of existence of a constant symmetry matrix for a matrix Hamiltonian. • Method of constructing of a matrix Hamiltonian with a given constant symmetry matrix. • Examples of constructing of 2×2 matrix Hamiltonians with a given symmetry matrix.

  11. Properties of the matrix A-XY

    NARCIS (Netherlands)

    Steerneman, A.G.M.; van Perlo -ten Kleij, Frederieke

    2005-01-01

    The main topic of this paper is the matrix V = A - XY*, where A is a nonsingular complex k x k matrix and X and Y are k x p complex matrices of full column rank. Because properties of the matrix V can be derived from those of the matrix Q = I - XY*, we will consider in particular the case where A =

  12. Symmetries and Interactions in Matrix String Theory

    NARCIS (Netherlands)

    Hacquebord, F.H.

    1999-01-01

    This PhD-thesis reviews matrix string theory and recent developments therein. The emphasis is put on symmetries, interactions and scattering processes in the matrix model. We start with an introduction to matrix string theory and a review of the orbifold model that flows out of matrix string theory

  13. Size reduction of the transfer matrix of two-dimensional Ising and Potts models

    Directory of Open Access Journals (Sweden)

    M. Ghaemi

    2003-12-01

    Full Text Available  A new algebraic method is developed to reduce the size of the transfer matrix of Ising and three-state Potts ferromagnets on strips of width r sites of square and triangular lattices. This size reduction has been set up in such a way that the maximum eigenvalues of both the reduced and the original transfer matrices became exactly the same. In this method we write the original transfer matrix in a special blocked form in such a way that the sums of row elements of a block of the original transfer matrix be the same. The reduced matrix is obtained by replacing each block of the original transfer matrix with the sum of the elements of one of its rows. Our method results in significant matrix size reduction which is a crucial factor in determining the maximum eigenvalue.

  14. Towards Google matrix of brain

    Energy Technology Data Exchange (ETDEWEB)

    Shepelyansky, D.L., E-mail: dima@irsamc.ups-tlse.f [Laboratoire de Physique Theorique (IRSAMC), Universite de Toulouse, UPS, F-31062 Toulouse (France); LPT - IRSAMC, CNRS, F-31062 Toulouse (France); Zhirov, O.V. [Budker Institute of Nuclear Physics, 630090 Novosibirsk (Russian Federation)

    2010-07-12

    We apply the approach of the Google matrix, used in computer science and World Wide Web, to description of properties of neuronal networks. The Google matrix G is constructed on the basis of neuronal network of a brain model discussed in PNAS 105 (2008) 3593. We show that the spectrum of eigenvalues of G has a gapless structure with long living relaxation modes. The PageRank of the network becomes delocalized for certain values of the Google damping factor {alpha}. The properties of other eigenstates are also analyzed. We discuss further parallels and similarities between the World Wide Web and neuronal networks.

  15. Convolutional Network Coding Based on Matrix Power Series Representation

    CERN Document Server

    Guo, Wangmei; Sun, Qifu Tyler

    2011-01-01

    In this paper, convolutional network coding is formulated by means of matrix power series representation of the local encoding kernel (LEK) matrices and global encoding kernel (GEK) matrices to establish its theoretical fundamentals for practical implementations. From the encoding perspective, the GEKs of a convolutional network code (CNC) are shown to be uniquely determined by its LEK matrix $K(z)$ if $K_0$, the constant coefficient matrix of $K(z)$, is nilpotent. This will simplify the CNC design because a nilpotent $K_0$ suffices to guarantee a unique set of GEKs. Besides, the relation between coding topology and $K(z)$ is also discussed. From the decoding perspective, the main theme is to justify that the first $L+1$ terms of the GEK matrix $F(z)$ at a sink $r$ suffice to check whether the code is decodable at $r$ with delay $L$ and to start decoding if so. The concomitant decoding scheme avoids dealing with $F(z)$, which may contain infinite terms, as a whole and hence reduces the complexity of decodabil...

  16. Democratic Seesaw Mass Matrix Model and New Physics

    CERN Document Server

    Koide, Y

    1998-01-01

    A seesaw mass matrix model is reviewed as a unification model of quark and lepton mass matrices. The model can understand why top-quark mass m_t is so singularly enhanced compared with other quark masses, especially, why m_t >> m_b in contrast to m_u = O(m_d), and why only top-quark mass is of the order of the electroweak scale Lambda_W, i.e., m_t = O(Lambda_W). The model predicts the fourth up-quark t' with a mass m_{t'}= O(m_{W_R}), and an abnormal structure of the right-handed up-quark mixing matrix U_R^u. Possible new physics is discussed.

  17. Random matrix theory and multivariate statistics

    OpenAIRE

    Diaz-Garcia, Jose A.; Jáimez, Ramon Gutiérrez

    2009-01-01

    Some tools and ideas are interchanged between random matrix theory and multivariate statistics. In the context of the random matrix theory, classes of spherical and generalised Wishart random matrix ensemble, containing as particular cases the classical random matrix ensembles, are proposed. Some properties of these classes of ensemble are analysed. In addition, the random matrix ensemble approach is extended and a unified theory proposed for the study of distributions for real normed divisio...

  18. Matrix theory selected topics and useful results

    CERN Document Server

    Mehta, Madan Lal

    1989-01-01

    Matrices and operations on matrices ; determinants ; elementary operations on matrices (continued) ; eigenvalues and eigenvectors, diagonalization of normal matrices ; functions of a matrix ; positive definiteness, various polar forms of a matrix ; special matrices ; matrices with quaternion elements ; inequalities ; generalised inverse of a matrix ; domain of values of a matrix, location and dispersion of eigenvalues ; symmetric functions ; integration over matrix variables ; permanents of doubly stochastic matrices ; infinite matrices ; Alexander matrices, knot polynomials, torsion numbers.

  19. Sign Patterns That Allow the Given Matrix

    Institute of Scientific and Technical Information of China (English)

    邵燕灵; 孙良

    2003-01-01

    Let P be a property referring to a real matrix. For a sign pattern A, if there exists a real matrix B in the qualitative class of A such that B has property P, then we say A allows P. Three cases that A allows an M-matrix, an inverse M-matrix and a P0-matrix are considered. The complete characterizations are obtained.

  20. Properties of the grasp stiffness matrix and conservative control strategies

    Energy Technology Data Exchange (ETDEWEB)

    Kao, I.; Ngo, C. [State Univ. of New York, Stony Brook, NY (United States)

    1999-02-01

    In this paper, the authors present fundamental properties of stiffness matrices as applied in analysis of grasping and dexterous manipulation in configuration spaces and linear Euclidean R{sup 3x3} space without rotational components. A conservative-stiffness matrix in such spaces needs to satisfy both symmetric and exact differential criteria. Two types of stiffness matrices are discussed: constant and configuration-dependent matrices are discussed: constant and configuration-dependent matrices. The symmetric part of a constant-stiffness matrix can be derived from a conservative quadratic potential function in the Hermitian form; while the skew-symmetric part is a function of the nonconservative curl vector field of the grasp. A configuration-dependent stiffness matrix needs to be symmetric and must simultaneously satisfy the exact differential condition to be conservative. The theory is most relevant to the Cartesian stiffness control, where the stiffness of the end effector is usually constant, such as that in RCC wrists. Conservative control strategies are proposed for a configuration-dependent stiffness matrix. One of the most important results of this paper is the nonconservative congruence mapping of stiffness between the joint and Cartesian spaces. In general, the congruence transformation (or its inverse transformation), K{sub {theta}} = J{sub {theta}}{sup T}K{sub p}J{sub {theta}}, is a nonconservative mapping over finite paths for a configuration-dependent Jacobian. Thus, to obtain a conservative system with respect to the Cartesian space, one has to either find the corresponding K{sub {theta}} at every configuration due to the constant and symmetric Cartesian stiffness matrix, or determine symmetric yet configuration-varying K{sub {theta}} at every configuration due to the constant and symmetric Cartesian stiffness matrix, or determine the symmetric yet configuration-varying K{sub {theta}} which makes the resulting configuration-dependent K{sub p

  1. STUDYING THE SECONDARY STRUCTURE OF ACCESSION NUMBER USING CETD MATRIX

    Directory of Open Access Journals (Sweden)

    Anamika Dutta

    2016-10-01

    Full Text Available This paper, we have tried to analyze about the Secondary Structure of nucleotide sequences of rice. The data have been collected from NCBI (National Centre for Biotechnology Information using Nucleotide as data base. All the programs were developed using R programming language using “sequinr” package. Here, we have used CETD matrix method to study the prediction. The conclusions are drawn accordingly.

  2. Unravelling the nuclear matrix proteome

    DEFF Research Database (Denmark)

    Albrethsen, Jakob; Knol, Jaco C; Jimenez, Connie R

    2009-01-01

    The nuclear matrix (NM) model posits the presence of a protein/RNA scaffold that spans the mammalian nucleus. The NM proteins are involved in basic nuclear function and are a promising source of protein biomarkers for cancer. Importantly, the NM proteome is operationally defined as the proteins...

  3. Parallel Sparse Matrix - Vector Product

    DEFF Research Database (Denmark)

    Alexandersen, Joe; Lazarov, Boyan Stefanov; Dammann, Bernd

    This technical report contains a case study of a sparse matrix-vector product routine, implemented for parallel execution on a compute cluster with both pure MPI and hybrid MPI-OpenMP solutions. C++ classes for sparse data types were developed and the report shows how these class can be used...

  4. Matrix Treatment of Ray Optics.

    Science.gov (United States)

    Quon, W. Steve

    1996-01-01

    Describes a method to combine two learning experiences--optical physics and matrix mathematics--in a straightforward laboratory experiment that allows engineering/physics students to integrate a variety of learning insights and technical skills, including using lasers, studying refraction through thin lenses, applying concepts of matrix…

  5. Sparse Matrix Vector Processing Formats

    NARCIS (Netherlands)

    Stathis, P.T.

    2004-01-01

    In this dissertation we have identified vector processing shortcomings related to the efficient storing and processing of sparse matrices. To alleviate existent problems we propose two storage formats denoted as Block Based Compression Storage (BBCS) format and Hierarchical Sparse Matrix (HiSM) stor

  6. The COMPADRE Plant Matrix Database

    DEFF Research Database (Denmark)

    2014-01-01

    COMPADRE contains demographic information on hundreds of plant species. The data in COMPADRE are in the form of matrix population models and our goal is to make these publicly available to facilitate their use for research and teaching purposes. COMPADRE is an open-access database. We only request...

  7. Hyper-systolic matrix multiplication

    NARCIS (Netherlands)

    Lippert, Th.; Petkov, N.; Palazzari, P.; Schilling, K.

    2001-01-01

    A novel parallel algorithm for matrix multiplication is presented. It is based on a 1-D hyper-systolic processor abstraction. The procedure can be implemented on all types of parallel systems. (C) 2001 Elsevier Science B,V. All rights reserved.

  8. Student Transfer Matrix, Fall 1996.

    Science.gov (United States)

    Oklahoma State Regents for Higher Education, Oklahoma City.

    The Student Transfer Matrix provides data on the numbers of students transferring from Oklahoma public and private institutions of higher education to other Oklahoma institutions, using data from receiving institutions. Among the highlights are: the number of students who transferred to four-year and two-year institutions remained steady at 57.8…

  9. Regularization in Matrix Relevance Learning

    NARCIS (Netherlands)

    Schneider, Petra; Bunte, Kerstin; Stiekema, Han; Hammer, Barbara; Villmann, Thomas; Biehl, Michael

    2010-01-01

    A In this paper, we present a regularization technique to extend recently proposed matrix learning schemes in learning vector quantization (LVQ). These learning algorithms extend the concept of adaptive distance measures in LVQ to the use of relevance matrices. In general, metric learning can displa

  10. Perturbation semigroup of matrix algebras

    OpenAIRE

    Neumann, N.; Suijlekom, W.D. van

    2016-01-01

    In this article we analyze the structure of the semigroup of inner perturbations in noncommutative geometry. This perturbation semigroup is associated to a unital associative *-algebra and extends the group of unitary elements of this *-algebra. We compute the perturbation semigroup for all matrix algebras.

  11. Bilateral matrix-exponential distributions

    DEFF Research Database (Denmark)

    Bladt, Mogens; Esparza, Luz Judith R; Nielsen, Bo Friis

    2012-01-01

    In this article we define the classes of bilateral and multivariate bilateral matrix-exponential distributions. These distributions have support on the entire real space and have rational moment-generating functions. These distributions extend the class of bilateral phasetype distributions of [1]...

  12. Multivariate Modelling via Matrix Subordination

    DEFF Research Database (Denmark)

    Nicolato, Elisa

    stochastic volatility via time-change is quite ineffective when applied to the multivariate setting. In this work we propose a new class of models, which is obtained by conditioning a multivariate Brownian Motion to a so-called matrix subordinator. The obtained model-class encompasses the vast majority...

  13. Neonatal disorders of germinal matrix

    NARCIS (Netherlands)

    Raets, M M A; Dudink, J; Govaert, P

    2015-01-01

    The germinal matrix (GM) is a richly vascularized, transient layer near the ventricles. It produces neurons and glial cells, and is present in the foetal brain between 8 and 36 weeks of gestation. At 25 weeks, it reaches its maximum volume and subsequently withers. The GM is vulnerable to haemorrhag

  14. Adams Operations on Matrix Factorizations

    OpenAIRE

    Brown, Michael K.; Miller, Claudia; Thompson, Peder; Walker, Mark E.

    2016-01-01

    We define Adams operations on matrix factorizations, and we show these operations enjoy analogues of several key properties of the Adams operations on perfect complexes with support developed by Gillet-Soul\\'e in their paper "Intersection Theory Using Adams Operations". As an application, we give a proof of a conjecture of Dao-Kurano concerning the vanishing of Hochster's theta invariant.

  15. Parallel Sparse Matrix - Vector Product

    DEFF Research Database (Denmark)

    Alexandersen, Joe; Lazarov, Boyan Stefanov; Dammann, Bernd

    This technical report contains a case study of a sparse matrix-vector product routine, implemented for parallel execution on a compute cluster with both pure MPI and hybrid MPI-OpenMP solutions. C++ classes for sparse data types were developed and the report shows how these class can be used...

  16. The COMPADRE Plant Matrix Database

    DEFF Research Database (Denmark)

    2014-01-01

    COMPADRE contains demographic information on hundreds of plant species. The data in COMPADRE are in the form of matrix population models and our goal is to make these publicly available to facilitate their use for research and teaching purposes. COMPADRE is an open-access database. We only request...

  17. Multivariate Matrix-Exponential Distributions

    DEFF Research Database (Denmark)

    Bladt, Mogens; Nielsen, Bo Friis

    2010-01-01

    -exponential distributions. We prove a characterization that states that a distribution is an MVME distribution if and only if all non-negative, non-null linear combinations of the coordinates have a univariate matrix-exponential distribution. This theorem is analog to a well-known characterization theorem...

  18. Hierarchical subtask discovery with non-negative matrix factorization

    CSIR Research Space (South Africa)

    Earle, AC

    2017-08-01

    Full Text Available . Donoho, D. and Stodden, V. When does non-negative matrix factorization give a correct decomposition into parts? Proc. Advances in Neural Information Processing Systems 16, pp. 1141–1148, 2004. Hennequin, R., David, B., and Badeau, R. Beta-divergence as a... with Linearly Solvable Markov Decision Processes. arXiv, 2016. S¸ims¸ek, Ö. and Barto, A.S. Skill Characterization Based on Be- tweenness. Advances in Neural Information Processing Systems, pp. 1497–1504, 2009. Solway, A., Diuk, C., Córdova, N., Yee, D., Barto...

  19. H∞ /H2 model reduction through dilated linear matrix inequalities

    DEFF Research Database (Denmark)

    Adegas, Fabiano Daher; Stoustrup, Jakob

    2012-01-01

    This paper presents sufficient dilated linear matrix inequalities (LMI) conditions to the $H_{infty}$ and $H_{2}$ model reduction problem. A special structure of the auxiliary (slack) variables allows the original model of order $n$ to be reduced to an order $r=n/s$ where $n,r,s in field...... not satisfactorily approximates the original system, an iterative algorithm based on dilated LMIs is proposed to significantly improve the approximation bound. The effectiveness of the method is accessed by numerical experiments. The method is also applied to the $H_2$ order reduction of a flexible wind turbine...

  20. The HDTV digital audio matrix

    Science.gov (United States)

    Mason, A. J.

    Multichannel sound systems are being studied as part of the Eureka 95 and Radio-communication Bureau TG10-1 investigations into high definition television. One emerging sound system has five channels; three at the front and two at the back. This raises some compatibility issues. The listener might have only, say, two loudspeakers or the material to be broadcast may have fewer than five channels. The problem is how best to produce a set of signals to be broadcast, which is suitable for all listeners, from those that are available. To investigate this area, a device has been designed and built which has six input channels and six output channels. Each output signal is a linear combination of the input signals. The inputs and outputs are in AES/EBU digital audio format using BBC-designed AESIC chips. The matrix operation, to produce the six outputs from the six inputs, is performed by a Motorola DSP56001. The user interface and 'housekeeping' is managed by a T222 transputer. The operator of the matrix uses a VDU to enter sets of coefficients and a rotary switch to select which set to use. A set of analog controls is also available and is used to control operations other than the simple compatibility matrixing. The matrix has been very useful for simple tasks: mixing a stereo signal into mono, creating a stereo signal from a mono signal, applying a fixed gain or attenuation to a signal, exchanging the A and B channels of an AES/EBU bitstream, and so on. These are readily achieved using simple sets of coefficients. Additions to the user interface software have led to several more sophisticated applications which still consist of a matrix operation. Different multichannel panning laws have been evaluated. The analog controls adjust the panning; the audio signals are processed digitally using a matrix operation. A digital SoundField microphone decoder has also been implemented. digital audio matrix is such that it can be applied to a wide variety of signal processing

  1. A DIRECT ALGORITHM FOR DISTINGUISHING NONSINGULAR M-MATRIX AND H-MATRIX

    Institute of Scientific and Technical Information of China (English)

    Li Yaotang; Zhu Yan

    2005-01-01

    A direct algorithm is proposed by which one can distinguish whether a matrix is an M-matrix (or H-matrix) or not quickly and effectively. Numerical examples show that it is effective and convincible to distinguish M-matrix (or H-matrix) by using the algorithm.

  2. R/2R DAC Nonlinearity Compensation

    OpenAIRE

    Kulig, Gabriel; Wallin, Gustav

    2012-01-01

    The resistor ladder (R/2R) digital-to-analogue converter (DAC) architecture is often used in high performance audio solutions due to its low-noise performance. Even high-end R/2R DACs suffer from static nonlinearity distortions. It was suspected that compensating for these nonlinearities would be possible. It was also suspected that this could improve audio quality in audio systems using R/2R DACs for digital-to-analogue (A/D) conversion. Through the use of models of the resistor ladder archi...

  3. R quick syntax reference

    CERN Document Server

    Tollefson, Margot

    2014-01-01

    The R Quick Syntax Reference is a handy reference book detailing the intricacies of the R language. Not only is R a free, open-source tool, R is powerful, flexible, and has state of the art statistical techniques available. With the many details which must be correct when using any language, however, the R Quick Syntax Reference makes using R easier.Starting with the basic structure of R, the book takes you on a journey through the terminology used in R and the syntax required to make R work. You will find looking up the correct form for an expression quick and easy. With a copy of the R Quick

  4. The Constrained Solutions of Two Matrix Equations

    Institute of Scientific and Technical Information of China (English)

    An Ping LIAO; Zhong Zhi BAI

    2002-01-01

    We study the symmetric positive semidefinite solution of the matrix equation AX1AT +BX2BT = C, where A is a given real m × n matrix, B is a given real m × p matrix, and C is a givenreal m × m matrix, with m, n, p positive integers; and the bisymmetric positive semidefinite solutionof the matrix equation DTXD = C, where D is a given real n × m matrix, C is a given real m × mmatrix, with m, n positive integers. By making use of the generalized singular value decomposition, wederive general analytic formulae, and present necessary and sufficient conditions for guaranteeing theexistence of these solutions.

  5. Heat Transfer Characteristics of Regenerator Matrix (Case of Packed Wire Gauzes)

    Science.gov (United States)

    Hamaguchi, K.; Takahashi, S.; Miyabe, H.

    1984-01-01

    The average heat transfer coefficient in the matrix of laminated wire screens (10 to 250 mesh) for a Stirling engine heat exchanger was studied experimentally. The data are correlated by N sub ud = 0.42 R sub ed 0.56 (3 or = R sub ed or = 400), and R sub ed are the Nusselt and Reynolds nubmers based on the wire diameter. The pressure drop decreased and the heat transfer increased as the wire diameter was decreased.

  6. Carbon Dots and 9AA as a Binary Matrix for the Detection of Small Molecules by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry.

    Science.gov (United States)

    Chen, Yongli; Gao, Dan; Bai, Hangrui; Liu, Hongxia; Lin, Shuo; Jiang, Yuyang

    2016-07-01

    Application of matrix-assisted laser-desorption/ionization mass spectrometry (MALDI MS) to analyze small molecules have some limitations, due to the inhomogeneous analyte/matrix co-crystallization and interference of matrix-related peaks in low m/z region. In this work, carbon dots (CDs) were for the first time applied as a binary matrix with 9-Aminoacridine (9AA) in MALDI MS for small molecules analysis. By 9AA/CDs assisted desorption/ionization (D/I) process, a wide range of small molecules, including nucleosides, amino acids, oligosaccharides, peptides, and anticancer drugs with a higher sensitivity were demonstrated in the positive ion mode. A detection limit down to 5 fmol was achieved for cytidine. 9AA/CDs matrix also exhibited excellent reproducibility compared with 9AA matrix. Moreover, by exploring the ionization mechanism of the matrix, the influence factors might be attributed to the four parts: (1) the strong UV absorption of 9AA/CDs due to their π-conjugated network; (2) the carboxyl groups modified on the CDs surface act as protonation sites for proton transfer in positive ion mode; (3) the thin layer crystal of 9AA/CDs could reach a high surface temperature more easily and lower transfer energy for LDI MS; (4) CDs could serve as a matrix additive to suppress 9AA ionization. Furthermore, this matrix was allowed for the analysis of glucose as well as nucleosides in human urine, and the level of cytidine was quantified with a linear range of 0.05-5 mM (R(2) > 0.99). Therefore, the 9AA/CDs matrix was proven to be an effective MALDI matrix for the analysis of small molecules with improved sensitivity and reproducibility. This work provides an alternative solution for small molecules detection that can be further used in complex samples analysis. Graphical Abstract ᅟ.

  7. Carbon Dots and 9AA as a Binary Matrix for the Detection of Small Molecules by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry

    Science.gov (United States)

    Chen, Yongli; Gao, Dan; Bai, Hangrui; Liu, Hongxia; Lin, Shuo; Jiang, Yuyang

    2016-07-01

    Application of matrix-assisted laser-desorption/ionization mass spectrometry (MALDI MS) to analyze small molecules have some limitations, due to the inhomogeneous analyte/matrix co-crystallization and interference of matrix-related peaks in low m/z region. In this work, carbon dots (CDs) were for the first time applied as a binary matrix with 9-Aminoacridine (9AA) in MALDI MS for small molecules analysis. By 9AA/CDs assisted desorption/ionization (D/I) process, a wide range of small molecules, including nucleosides, amino acids, oligosaccharides, peptides, and anticancer drugs with a higher sensitivity were demonstrated in the positive ion mode. A detection limit down to 5 fmol was achieved for cytidine. 9AA/CDs matrix also exhibited excellent reproducibility compared with 9AA matrix. Moreover, by exploring the ionization mechanism of the matrix, the influence factors might be attributed to the four parts: (1) the strong UV absorption of 9AA/CDs due to their π-conjugated network; (2) the carboxyl groups modified on the CDs surface act as protonation sites for proton transfer in positive ion mode; (3) the thin layer crystal of 9AA/CDs could reach a high surface temperature more easily and lower transfer energy for LDI MS; (4) CDs could serve as a matrix additive to suppress 9AA ionization. Furthermore, this matrix was allowed for the analysis of glucose as well as nucleosides in human urine, and the level of cytidine was quantified with a linear range of 0.05-5 mM (R2 > 0.99). Therefore, the 9AA/CDs matrix was proven to be an effective MALDI matrix for the analysis of small molecules with improved sensitivity and reproducibility. This work provides an alternative solution for small molecules detection that can be further used in complex samples analysis.

  8. Scrambling with matrix black holes

    Science.gov (United States)

    Brady, Lucas; Sahakian, Vatche

    2013-08-01

    If black holes are not to be dreaded sinks of information but rather fully described by unitary evolution, they must scramble in-falling data and eventually leak it through Hawking radiation. Sekino and Susskind have conjectured that black holes are fast scramblers; they generate entanglement at a remarkably efficient rate, with the characteristic time scaling logarithmically with the entropy. In this work, we focus on Matrix theory—M-theory in the light-cone frame—and directly probe the conjecture. We develop a concrete test bed for quantum gravity using the fermionic variables of Matrix theory and show that the problem becomes that of chains of qubits with an intricate network of interactions. We demonstrate that the black hole system evolves much like a Brownian quantum circuit, with strong indications that it is indeed a fast scrambler. We also analyze the Berenstein-Maldacena-Nastase model and reach the same tentative conclusion.

  9. Link Prediction via Matrix Completion

    CERN Document Server

    Pech, Ratha; Pan, Liming; Cheng, Hong; Zhou, Tao

    2016-01-01

    Inspired by practical importance of social networks, economic networks, biological networks and so on, studies on large and complex networks have attracted a surge of attentions in the recent years. Link prediction is a fundamental issue to understand the mechanisms by which new links are added to the networks. We introduce the method of robust principal component analysis (robust PCA) into link prediction, and estimate the missing entries of the adjacency matrix. On one hand, our algorithm is based on the sparsity and low rank property of the matrix, on the other hand, it also performs very well when the network is dense. This is because a relatively dense real network is also sparse in comparison to the complete graph. According to extensive experiments on real networks from disparate fields, when the target network is connected and sufficiently dense, whatever it is weighted or unweighted, our method is demonstrated to be very effective and with prediction accuracy being considerably improved comparing wit...

  10. Standardisation of ceramic matrix composites

    Directory of Open Access Journals (Sweden)

    Gomez Philippe

    2015-01-01

    Full Text Available The standardisation on ceramic matrix composite (CMCs test methods occurred in the 1980's as these materials began to display interesting properties for aeronautical applications. Since the French Office of standardisation B43C has participated in establishing more than 40 standards and guides dealing with their thermal mechanical properties, their reinforcement and their fibre/matrix interface. As their maturity has been demonstrated through several technological development programmes (plugs, flaps, blades …, the air framers and engine manufacturers are now thinking of develop industrial parts which require a certification from airworthiness authorities. Now the standardisation of CMCs has to turn toward documents completing the certification requirement for civil and military applications. The news standards will allow being more confident with CMCs in taking into account their specificity.

  11. Density matrix quantum Monte Carlo

    CERN Document Server

    Blunt, N S; Spencer, J S; Foulkes, W M C

    2013-01-01

    This paper describes a quantum Monte Carlo method capable of sampling the full density matrix of a many-particle system, thus granting access to arbitrary reduced density matrices and allowing expectation values of complicated non-local operators to be evaluated easily. The direct sampling of the density matrix also raises the possibility of calculating previously inaccessible entanglement measures. The algorithm closely resembles the recently introduced full configuration interaction quantum Monte Carlo method, but works all the way from infinite to zero temperature. We explain the theory underlying the method, describe the algorithm, and introduce an importance-sampling procedure to improve the stochastic efficiency. To demonstrate the potential of our approach, the energy and staggered magnetization of the isotropic antiferromagnetic Heisenberg model on small lattices and the concurrence of one-dimensional spin rings are compared to exact or well-established results. Finally, the nature of the sign problem...

  12. Matrix dynamics of fuzzy spheres

    CERN Document Server

    Jatkar, D P; Wadia, S R; Yogendran, K P; Jatkar, Dileep P.; Mandal, Gautam; Wadia, Spenta R.

    2002-01-01

    We study the dynamics of fuzzy two-spheres in a matrix model which represents string theory in the presence of RR flux. We analyze the stability of known static solutions of such a theory which contain commuting matrices and SU(2) representations. We find that irreducible as well as reducible representations are stable. Since the latter are of higher energy, this stability poses a puzzle. We resolve this puzzle by noting that reducible representations have marginal directions corresponding to non-spherical deformations. We obtain new static solutions by turning on these marginal deformations. These solutions now have instability or tachyonic directions. We discuss condensation of these tachyons which correspond to classical trajectories interpolating from multiple, small fuzzy spheres to a single, large sphere. We briefly discuss spatially independent configurations of a D3/D5 system described by the same matrix model which now possesses a supergravity dual.

  13. Matrix metalloproteinases in lung biology

    Directory of Open Access Journals (Sweden)

    Parks William C

    2000-12-01

    Full Text Available Abstract Despite much information on their catalytic properties and gene regulation, we actually know very little of what matrix metalloproteinases (MMPs do in tissues. The catalytic activity of these enzymes has been implicated to function in normal lung biology by participating in branching morphogenesis, homeostasis, and repair, among other events. Overexpression of MMPs, however, has also been blamed for much of the tissue destruction associated with lung inflammation and disease. Beyond their role in the turnover and degradation of extracellular matrix proteins, MMPs also process, activate, and deactivate a variety of soluble factors, and seldom is it readily apparent by presence alone if a specific proteinase in an inflammatory setting is contributing to a reparative or disease process. An important goal of MMP research will be to identify the actual substrates upon which specific enzymes act. This information, in turn, will lead to a clearer understanding of how these extracellular proteinases function in lung development, repair, and disease.

  14. Vibrational Density Matrix Renormalization Group.

    Science.gov (United States)

    Baiardi, Alberto; Stein, Christopher J; Barone, Vincenzo; Reiher, Markus

    2017-08-08

    Variational approaches for the calculation of vibrational wave functions and energies are a natural route to obtain highly accurate results with controllable errors. Here, we demonstrate how the density matrix renormalization group (DMRG) can be exploited to optimize vibrational wave functions (vDMRG) expressed as matrix product states. We study the convergence of these calculations with respect to the size of the local basis of each mode, the number of renormalized block states, and the number of DMRG sweeps required. We demonstrate the high accuracy achieved by vDMRG for small molecules that were intensively studied in the literature. We then proceed to show that the complete fingerprint region of the sarcosyn-glycin dipeptide can be calculated with vDMRG.

  15. 75 FR 68970 - Amendment of Using Agency for Restricted Areas R-4002, R-4005, R-4006 and R-4007; MD

    Science.gov (United States)

    2010-11-10

    ... Restricted Areas R-4002, R-4005, R- 4006 and R-4007; MD AGENCY: Federal Aviation Administration (FAA), DOT... restricted areas R-4002, Bloodsworth Island, MD; and R-4005, R-4006 and R-4007, Patuxent River, MD to ``U.S... areas R-4002, R-4005, R-4006 and R-4007 in Maryland, in order to reflect the correct......

  16. Staggered chiral random matrix theory

    CERN Document Server

    Osborn, James C

    2010-01-01

    We present a random matrix theory (RMT) for the staggered lattice QCD Dirac operator. The staggered RMT is equivalent to the zero-momentum limit of the staggered chiral Lagrangian and includes all taste breaking terms at their leading order. This is an extension of previous work which only included some of the taste breaking terms. We will also present some results for the taste breaking contributions to the partition function and the Dirac eigenvalues.

  17. Model Reduction via Reducibility Matrix

    Institute of Scientific and Technical Information of China (English)

    Musa Abdalla; Othman Alsmadi

    2006-01-01

    In this work, a new model reduction technique is introduced. The proposed technique is derived using the matrix reducibility concept. The eigenvalues of the reduced model are preserved; that is, the reduced model eigenvalues are a subset of the full order model eigenvalues. This preservation of the eigenvalues makes the mathematical model closer to the physical model. Finally, the outcomes of this method are fully illustrated using simulations of two numeric examples.

  18. Myocardial structure and matrix metalloproteinases.

    Science.gov (United States)

    Aggeli, C; Pietri, P; Felekos, I; Rautopoulos, L; Toutouzas, K; Tsiamis, E; Stefanadis, C

    2012-01-01

    Metalloproteinases (MMPs) are enzymes which enhance proteolysis of extracellular matrix proteins. The pathophysiologic and prognostic role of MMPs has been demonstrated in numerous studies. The present review covers a wide a range of topics with regards to MMPs structural and functional properties, as well as their role in myocardial remodeling in several cardiovascular diseases. Moreover, the clinical and therapeutic implications from their assessment are highlighted.

  19. Coherence matrix of plasmonic beams

    DEFF Research Database (Denmark)

    Novitsky, Andrey; Lavrinenko, Andrei

    2013-01-01

    We consider monochromatic electromagnetic beams of surface plasmon-polaritons created at interfaces between dielectric media and metals. We theoretically study non-coherent superpositions of elementary surface waves and discuss their spectral degree of polarization, Stokes parameters, and the for...... of the spectral coherence matrix. We compare the polarization properties of the surface plasmonspolaritons as three-dimensional and two-dimensional fields concluding that the latter is superior....

  20. Random matrix improved subspace clustering

    KAUST Repository

    Couillet, Romain

    2017-03-06

    This article introduces a spectral method for statistical subspace clustering. The method is built upon standard kernel spectral clustering techniques, however carefully tuned by theoretical understanding arising from random matrix findings. We show in particular that our method provides high clustering performance while standard kernel choices provably fail. An application to user grouping based on vector channel observations in the context of massive MIMO wireless communication networks is provided.

  1. MALDI Matrix Research for Biopolymers

    Science.gov (United States)

    Fukuyama, Yuko

    2015-01-01

    Matrices are necessary materials for ionizing analytes in matrix-assisted laser desorption/ionization-mass spectrometry (MALDI-MS). The choice of a matrix appropriate for each analyte controls the analyses. Thus, in some cases, development or improvement of matrices can become a tool for solving problems. This paper reviews MALDI matrix research that the author has conducted in the recent decade. It describes glycopeptide, carbohydrate, or phosphopeptide analyses using 2,5-dihydroxybenzoic acid (2,5-DHB), 1,1,3,3-tetramethylguanidinium (TMG) salts of p-coumaric acid (CA) (G3CA), 3-aminoquinoline (3-AQ)/α-cyano-4-hydroxycinnamic acid (CHCA) (3-AQ/CHCA) or 3-AQ/CA and gengeral peptide, peptide containing disulfide bonds or hydrophobic peptide analyses using butylamine salt of CHCA (CHCAB), 1,5-diaminonaphthalene (1,5-DAN), octyl 2,5-dihydroxybenzoate (alkylated dihydroxybenzoate, ADHB), or 1-(2,4,6-trihydroxyphenyl)octan-1-one (alkylated trihydroxyacetophenone, ATHAP). PMID:26819908

  2. Topics in Matrix Sampling Algorithms

    CERN Document Server

    Boutsidis, Christos

    2011-01-01

    We study three fundamental problems of Linear Algebra, lying in the heart of various Machine Learning applications, namely: 1)"Low-rank Column-based Matrix Approximation". We are given a matrix A and a target rank k. The goal is to select a subset of columns of A and, by using only these columns, compute a rank k approximation to A that is as good as the rank k approximation that would have been obtained by using all the columns; 2) "Coreset Construction in Least-Squares Regression". We are given a matrix A and a vector b. Consider the (over-constrained) least-squares problem of minimizing ||Ax-b||, over all vectors x in D. The domain D represents the constraints on the solution and can be arbitrary. The goal is to select a subset of the rows of A and b and, by using only these rows, find a solution vector that is as good as the solution vector that would have been obtained by using all the rows; 3) "Feature Selection in K-means Clustering". We are given a set of points described with respect to a large numbe...

  3. Integrable matrix theory: Level statistics.

    Science.gov (United States)

    Scaramazza, Jasen A; Shastry, B Sriram; Yuzbashyan, Emil A

    2016-09-01

    We study level statistics in ensembles of integrable N×N matrices linear in a real parameter x. The matrix H(x) is considered integrable if it has a prescribed number n>1 of linearly independent commuting partners H^{i}(x) (integrals of motion) [H(x),H^{i}(x)]=0, [H^{i}(x),H^{j}(x)]=0, for all x. In a recent work [Phys. Rev. E 93, 052114 (2016)2470-004510.1103/PhysRevE.93.052114], we developed a basis-independent construction of H(x) for any n from which we derived the probability density function, thereby determining how to choose a typical integrable matrix from the ensemble. Here, we find that typical integrable matrices have Poisson statistics in the N→∞ limit provided n scales at least as logN; otherwise, they exhibit level repulsion. Exceptions to the Poisson case occur at isolated coupling values x=x_{0} or when correlations are introduced between typically independent matrix parameters. However, level statistics cross over to Poisson at O(N^{-0.5}) deviations from these exceptions, indicating that non-Poissonian statistics characterize only subsets of measure zero in the parameter space. Furthermore, we present strong numerical evidence that ensembles of integrable matrices are stationary and ergodic with respect to nearest-neighbor level statistics.

  4. Integrable matrix theory: Level statistics

    Science.gov (United States)

    Scaramazza, Jasen A.; Shastry, B. Sriram; Yuzbashyan, Emil A.

    2016-09-01

    We study level statistics in ensembles of integrable N ×N matrices linear in a real parameter x . The matrix H (x ) is considered integrable if it has a prescribed number n >1 of linearly independent commuting partners Hi(x ) (integrals of motion) "]Hi(x ) ,Hj(x ) ]">H (x ) ,Hi(x ) =0 , for all x . In a recent work [Phys. Rev. E 93, 052114 (2016), 10.1103/PhysRevE.93.052114], we developed a basis-independent construction of H (x ) for any n from which we derived the probability density function, thereby determining how to choose a typical integrable matrix from the ensemble. Here, we find that typical integrable matrices have Poisson statistics in the N →∞ limit provided n scales at least as logN ; otherwise, they exhibit level repulsion. Exceptions to the Poisson case occur at isolated coupling values x =x0 or when correlations are introduced between typically independent matrix parameters. However, level statistics cross over to Poisson at O (N-0.5) deviations from these exceptions, indicating that non-Poissonian statistics characterize only subsets of measure zero in the parameter space. Furthermore, we present strong numerical evidence that ensembles of integrable matrices are stationary and ergodic with respect to nearest-neighbor level statistics.

  5. A Fortran program to calculate the matrix elements of the Coulomb interaction involving hydrogenic wave functions

    Science.gov (United States)

    Sarkadi, L.

    2017-03-01

    The program MTRXCOUL [1] calculates the matrix elements of the Coulomb interaction between a charged particle and an atomic electron, ∫ ψf∗ (r) | R - r | - 1ψi(r) d r. Bound-free transitions are considered, and non-relativistic hydrogenic wave functions are used. In this revised version a bug discovered in the F3Y CPC Program Library (PL) subprogram [2] is fixed. Furthermore, the COULCC CPC PL subprogram [3] applied for the calculations of the radial wave functions of the free states and the Bessel functions is replaced by the CPC PL subprogram DCOUL [4].

  6. Matrix Superpotential Linear in Variable Parameter

    CERN Document Server

    Karadzhov, Yuri

    2011-01-01

    The paper presents the classification of matrix valued superpotentials corresponding to shape invariant systems of Schr\\"odinger equations. All inequivalent irreducible matrix superpotentials realized by matrices of arbitrary dimension with linear dependence on variable parameter are presented explicitly.

  7. Cubic Matrix, Nambu Mechanics and Beyond

    OpenAIRE

    Kawamura, Y

    2002-01-01

    We propose a generalization of cubic matrix mechanics by introducing a canonical triplet and study its relation to Nambu mechanics. The generalized cubic matrix mechanics we consider can be interpreted as a “quantum” generalization of Nambu mechanics.

  8. "On some definitions in matrix algebra"

    OpenAIRE

    Magnus, Jan R.; Karim M. Abadir

    2007-01-01

    Many definitions in matrix algebra are not standardized. This notediscusses some of thepitfalls associated with undesirable orwrong definitions, anddealswith central conceptslikesymmetry, orthogonality, square root, Hermitian and quadratic forms, and matrix derivatives.

  9. L’Hospital rule for matrix functions

    Directory of Open Access Journals (Sweden)

    Z.M. Kishka

    2013-07-01

    Full Text Available In this paper, the L’Hospital rule for evaluating limits of complex matrix functions is introduced. We present some specific examples on certain matrix functions showing the applicability of our approach.

  10. SINE TRANSFORM MATRIX FOR SOLVING TOEPLITZ MATRIX PROBLEMS

    Institute of Scientific and Technical Information of China (English)

    Li-zhi Cheng

    2001-01-01

    In recent papers, some authors studied the solutions of symmetricpositive definite(SPD) Toeplitz systems Tn x = b by the conjugate gradient method(CG) with different sine trans- forms based preconditioners. In this paper, we first discuss the properties of eigenvalues for the main known circulant, skew circulant and sine transform based preconditioners. A counter example shows that E.Boman's preconditioner is only positive semi-definite for the banded Toeplitz matrix. To use preconditioner effectively, then we propose a modified Boman's preconditioner and a new Cesaro sum type sine transform based preconditioner. Finally, the results of numerical experimentation with these two preconditioners are pre- sented.

  11. Random Matrix theory approach to Quantum mechanics

    OpenAIRE

    Chaitanya, K. V. S. Shiv

    2015-01-01

    In this paper, we give random matrix theory approach to the quantum mechanics using the quantum Hamilton-Jacobi formalism. We show that the bound state problems in quantum mechanics are analogous to solving Gaussian unitary ensemble of random matrix theory. This study helps in identify the potential appear in the joint probability distribution function in the random matrix theory as a super potential. This approach allows to extend the random matrix theory to the newly discovered exceptional ...

  12. Analytic matrix elements with shifted correlated Gaussians

    DEFF Research Database (Denmark)

    Fedorov, D. V.

    2017-01-01

    Matrix elements between shifted correlated Gaussians of various potentials with several form-factors are calculated analytically. Analytic matrix elements are of importance for the correlated Gaussian method in quantum few-body physics.......Matrix elements between shifted correlated Gaussians of various potentials with several form-factors are calculated analytically. Analytic matrix elements are of importance for the correlated Gaussian method in quantum few-body physics....

  13. Continued Fraction Algorithm for Matrix Exponentials

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    A recursive rational algorithm for matrix exponentials was obtained by making use of the generalized inverse of a matrix in this paper. On the basis of the n-th convergence of Thiele-type continued fraction expansion, a new type of the generalized inverse matrix-valued Padé approximant (GMPA) for matrix exponentials was defined and its remainder formula was proved. The results of this paper were illustrated by some examples.

  14. Distance matrix-based approach to protein structure prediction.

    Science.gov (United States)

    Kloczkowski, Andrzej; Jernigan, Robert L; Wu, Zhijun; Song, Guang; Yang, Lei; Kolinski, Andrzej; Pokarowski, Piotr

    2009-03-01

    Much structural information is encoded in the internal distances; a distance matrix-based approach can be used to predict protein structure and dynamics, and for structural refinement. Our approach is based on the square distance matrix D = [r(ij)(2)] containing all square distances between residues in proteins. This distance matrix contains more information than the contact matrix C, that has elements of either 0 or 1 depending on whether the distance r (ij) is greater or less than a cutoff value r (cutoff). We have performed spectral decomposition of the distance matrices D = sigma lambda(k)V(k)V(kT), in terms of eigenvalues lambda kappa and the corresponding eigenvectors v kappa and found that it contains at most five nonzero terms. A dominant eigenvector is proportional to r (2)--the square distance of points from the center of mass, with the next three being the principal components of the system of points. By predicting r (2) from the sequence we can approximate a distance matrix of a protein with an expected RMSD value of about 7.3 A, and by combining it with the prediction of the first principal component we can improve this approximation to 4.0 A. We can also explain the role of hydrophobic interactions for the protein structure, because r is highly correlated with the hydrophobic profile of the sequence. Moreover, r is highly correlated with several sequence profiles which are useful in protein structure prediction, such as contact number, the residue-wise contact order (RWCO) or mean square fluctuations (i.e. crystallographic temperature factors). We have also shown that the next three components are related to spatial directionality of the secondary structure elements, and they may be also predicted from the sequence, improving overall structure prediction. We have also shown that the large number of available HIV-1 protease structures provides a remarkable sampling of conformations, which can be viewed as direct structural information about the

  15. Positivity of Matrices with Generalized Matrix Functions

    Institute of Scientific and Technical Information of China (English)

    Fuzhen ZHANG

    2012-01-01

    Using an elementary fact on matrices we show by a unified approach the positivity of a partitioned positive semidefinite matrix with each square block replaced by a compound matrix,an elementary symmetric function or a generalized matrix function.In addition,we present a refined version of the Thompson determinant compression theorem.

  16. Matrix algebra for higher order moments

    NARCIS (Netherlands)

    Meijer, Erik

    2005-01-01

    A large part of statistics is devoted to the estimation of models from the sample covariance matrix. The development of the statistical theory and estimators has been greatly facilitated by the introduction of special matrices, such as the commutation matrix and the duplication matrix, and the corre

  17. Matrix Sampling of Test Items. ERIC Digest.

    Science.gov (United States)

    Childs, Ruth A.; Jaciw, Andrew P.

    This Digest describes matrix sampling of test items as an approach to achieving broad coverage while minimizing testing time per student. Matrix sampling involves developing a complete set of items judged to cover the curriculum, then dividing the items into subsets and administering one subset to each student. Matrix sampling, by limiting the…

  18. An inversion algorithm for general tridiagonal matrix

    Institute of Scientific and Technical Information of China (English)

    Rui-sheng RAN; Ting-zhu HUANG; Xing-ping LIU; Tong-xiang GU

    2009-01-01

    An algorithm for the inverse of a general tridiagonal matrix is presented. For a tridiagonal matrix having the Doolittle factorization, an inversion algorithm is established.The algorithm is then generalized to deal with a general tridiagonal matrix without any restriction. Comparison with other methods is provided, indicating low computational complexity of the proposed algorithm, and its applicability to general tridiagonal matrices.

  19. Confocal Microscopy Imaging of the Biofilm Matrix

    DEFF Research Database (Denmark)

    Schlafer, Sebastian; Meyer, Rikke Louise

    2016-01-01

    The extracellular matrix is an integral part of microbial biofilms and an important field of research. Confocal laser scanning microscopy is a valuable tool for the study of biofilms, and in particular of the biofilm matrix, as it allows real-time visualization of fully hydrated, living specimens...... the concentration of solutes and the diffusive properties of the biofilm matrix....

  20. The Effect of Thermomechanical Processing on Mechanical Properties of a Cast 6061 Aluminum Metal Matrix Composite

    Science.gov (United States)

    1993-12-01

    Conference Proceedings, 1990 19. Lewandowski, J. J. et al., "Effects of Casting Conditions and Deformation Processing on A356 Aluminum and A356 -20 Vol...CAST 6061 ALUMINUM METAL MATRIX COMPOSITE by Werner Fletcher Hoyt December 1993 Thesis Advisor: Terry R. McNelley Approved for public release...Security Classification) THE EFFECT OF THERMOMECHANICAL PROCESSING ON MECHANICAL PROPERTIES OF A CAST 6061 ALUMINUM METAL MATRIX COMPOSITE 12. PERSONAL

  1. System performance with R407A, R407B, R407C compared to R22

    DEFF Research Database (Denmark)

    Knudsen, Hans Jørgen Høgaard

    1997-01-01

    The paper presents the results obtained by substituting R22 with mixtures of R32/R124/134a (R407A, R407B and R407C) in an existing refrigeration plant. The cooling water flow and cooling water inlet temperature together with the brine flow and brine inlet temperature have been kept on a value...... been determined.The results show that for R407C both the cooling capacity and the COP are smaller than the cooling capacity and COP for R22. The cooling capacity for R407A and for R407B is lower then the cooling capacity for R22 for brine temperatures less than 0 C and higher than the capacity for R22...

  2. Teaching Tip: When a Matrix and Its Inverse Are Stochastic

    Science.gov (United States)

    Ding, J.; Rhee, N. H.

    2013-01-01

    A stochastic matrix is a square matrix with nonnegative entries and row sums 1. The simplest example is a permutation matrix, whose rows permute the rows of an identity matrix. A permutation matrix and its inverse are both stochastic. We prove the converse, that is, if a matrix and its inverse are both stochastic, then it is a permutation matrix.

  3. Carbon matrix based magnetic nanocomposites for potential biomedical applications.

    Science.gov (United States)

    Izydorzak-Wozniak, M; Leonowicz, M

    2014-03-01

    It was found that by varying the pyrolysis temperature of the polymeric precursor, carbon matrix magnetic nanocomposites with different constitution and fractions of magnetic component were made. X-ray diffraction, transmission electron microscopy and Raman spectroscopy revealed the presence of nanocrystallites (NCs) of Co, Fe3C and Ni embedded in porous, partially-graphitized carbon matrix. Vibrating sample magnetometer measurements enabled to determine the correlation between NCs size distribution and magnetic properties. The magnetic studies confirmed that the coercivity, saturation and remanent magnetizations, as well as fraction of the magnetic component depend on the pyrolysis temperature. The Co#C and Fe3C#C composites exhibited ferromagnetic behavior with a remanent to saturation magnetization (M(R)/M(S)) ratio ranging from 0.25 to 0.3, whereas in the Ni containing samples a relatively small M(R)/M(S) ratio point to significant contribution of superparamagnetic interactions. As the carbon matrix magnetic nanocomposites are proposed for biomedical application the basic cytotoxicity test were performed to evaluate a potential toxic effect of the materials on MG-63 cells line.

  4. First-order density matrix as a functional of the ground-state electron density for harmonic confinement of two electrons which also interact harmonically

    Energy Technology Data Exchange (ETDEWEB)

    March, N.H

    2002-12-30

    The first-order density matrix {gamma}(r{sub 1},r{sub 2}) for the ground-state of a model two-electron atom is explicitly constructed from the electron density {rho}(r). The model has harmonic confinement plus interparticle harmonic interactions. {gamma}(r{sub 1},r{sub 2}) and {rho}(r) are related non-locally, even though no density gradients and no quadratures appear.

  5. Matrix models from localization of five-dimensional supersymmetric noncommutative U(1) gauge theory

    CERN Document Server

    Lee, Bum-Hoon; Yang, Hyun Seok

    2016-01-01

    We study localization of five-dimensional supersymmetric $U(1)$ gauge theory on $\\mathbb{S}^3 \\times \\mathbb{R}_{\\theta}^{2}$ where $\\mathbb{R}_{\\theta}^{2}$ is a noncommutative (NC) plane. The theory can be isomorphically mapped to three-dimensional supersymmetric $U(N \\to \\infty)$ gauge theory on $\\mathbb{S}^3$ using the matrix representation on a separable Hilbert space on which NC fields linearly act. Therefore the NC space $\\mathbb{R}_{\\theta}^{2}$ allows for a flexible path to derive matrix models via localization from a higher-dimensional supersymmetric NC $U(1)$ gauge theory. The result shows a rich duality between NC $U(1)$ gauge theories and large $N$ matrix models in various dimensions.

  6. Analytical development of disturbed matrix eigenvalue problem applied to mixed convection stability analysis in Darcy media

    Science.gov (United States)

    Hamed, Haikel Ben; Bennacer, Rachid

    2008-08-01

    This work consists in evaluating algebraically and numerically the influence of a disturbance on the spectral values of a diagonalizable matrix. Thus, two approaches will be possible; to use the theorem of disturbances of a matrix depending on a parameter, due to Lidskii and primarily based on the structure of Jordan of the no disturbed matrix. The second approach consists in factorizing the matrix system, and then carrying out a numerical calculation of the roots of the disturbances matrix characteristic polynomial. This problem can be a standard model in the equations of the continuous media mechanics. During this work, we chose to use the second approach and in order to illustrate the application, we choose the Rayleigh-Bénard problem in Darcy media, disturbed by a filtering through flow. The matrix form of the problem is calculated starting from a linear stability analysis by a finite elements method. We show that it is possible to break up the general phenomenon into other elementary ones described respectively by a disturbed matrix and a disturbance. A good agreement between the two methods was seen. To cite this article: H.B. Hamed, R. Bennacer, C. R. Mecanique 336 (2008).

  7. [Distribution of matrix-bound phosphine in surface sediments of Jinpu Bay].

    Science.gov (United States)

    You, Li-Li; Zong, Hai-Bo; Zhang, Shu-Fang; Yin, Guo-Yu; Li, Tao; Hou, Li-Jun

    2013-10-01

    This work investigated the distribution of matrix-bound phosphine in surface sediments of Jinpu Bay and associated environmental factors in summer, using the gas chromatography combined with a pulsed flame detector (GC-PFPD). It showed that phosphine ubiquitously presented in the sediments of Jinpu Bay. Contents of matrix-bound phosphine varied between 62. 58 and 190. 81 ng.kg-1, with the average value of 114.42 ng.kg-1. In addition, the spatial distribution of matrix-bound phosphine indicated that matrix-bound phosphine in inshore sediments had relatively higher contents than those in offshore sediments. Statistical analysis showed that matrix-bound phosphine significantly related to organic phosphorus and alkaline phosphatase activity ( R = 0. 882, P = 0. 01; R = 0. 819, P =0. 023). However, there were no correlations between matrix-bound phosphine and organic nitrogen, inorganic phosphorus and sediment grain sizes. These results implied that accumulation and distribution of matrix-bound phosphined were mainly affected by the decomposition of organic phosphorus by microorganisms.

  8. Diffusive dynamics on paper matrix

    Science.gov (United States)

    Chaudhury, Kaustav; Kar, Shantimoy; Chakraborty, Suman

    2016-11-01

    Writing with ink on a paper and the rapid diagnostics of diseases using paper cartridge, despite their remarkable diversities from application perspective, both involve the motion of a liquid from a source on a porous hydrophilic substrate. Here we bring out a generalization in the pertinent dynamics by appealing to the concerned ensemble-averaged transport with reference to the underlying molecular picture. Our results reveal that notwithstanding the associated complexities and diversities, the resultant liquid transport characteristics on a paper matrix, in a wide variety of applications, resemble universal diffusive dynamics. Agreement with experimental results from diversified applications is generic and validates our unified theory.

  9. Integrable matrix theory: Level statistics

    OpenAIRE

    2016-01-01

    We study level statistics in ensembles of integrable $N\\times N$ matrices linear in a real parameter $x$. The matrix $H(x)$ is considered integrable if it has a prescribed number $n>1$ of linearly independent commuting partners $H^i(x)$ (integrals of motion) $\\left[H(x),H^i(x)\\right] = 0$, $\\left[H^i(x), H^j(x)\\right]$ = 0, for all $x$. In a recent work, we developed a basis-independent construction of $H(x)$ for any $n$ from which we derived the probability density function, thereby determin...

  10. Matrix Completion from Noisy Entries

    CERN Document Server

    Keshavan, Raghunandan H; Oh, Sewoong

    2009-01-01

    Given a matrix M of low-rank, we consider the problem of reconstructing it from noisy observations of a small, random subset of its entries. The problem arises in a variety of applications, from collaborative filtering (the `Netflix problem') to structure-from-motion and positioning. We study a low complexity algorithm introduced by Keshavan et al.(2009), based on a combination of spectral techniques and manifold optimization, that we call here OptSpace. We prove performance guarantees that are order-optimal in a number of circumstances.

  11. Random matrix theory within superstatistics.

    Science.gov (United States)

    Abul-Magd, A Y

    2005-12-01

    We propose a generalization of the random matrix theory following the basic prescription of the recently suggested concept of superstatistics. Spectral characteristics of systems with mixed regular-chaotic dynamics are expressed as weighted averages of the corresponding quantities in the standard theory assuming that the mean level spacing itself is a stochastic variable. We illustrate the method by calculating the level density, the nearest-neighbor-spacing distributions, and the two-level correlation functions for systems in transition from order to chaos. The calculated spacing distribution fits the resonance statistics of random binary networks obtained in a recent numerical experiment.

  12. Neonatal disorders of germinal matrix.

    Science.gov (United States)

    Raets, M M A; Dudink, J; Govaert, P

    2015-11-01

    The germinal matrix (GM) is a richly vascularized, transient layer near the ventricles. It produces neurons and glial cells, and is present in the foetal brain between 8 and 36 weeks of gestation. At 25 weeks, it reaches its maximum volume and subsequently withers. The GM is vulnerable to haemorrhage in preterm infants. This selective vulnerability is explained by limited astrocyte end-feet coverage of microvessels, reduced expression of fibronectin and immature tight junctions. Focal lesions in the neonatal period include haemorrhage, germinolysis and stroke. Such lesions in transient layers interrupt normal brain maturation and induce neurodevelopmental sequelae.

  13. On bounded rank positive semidefinite matrix completions of extreme partial correlation matrices

    CERN Document Server

    Eisenberg-Nagy, Marianna; Varvitsiotis, Antonios

    2012-01-01

    We study a new geometric graph parameter $egd(G)$, defined as the smallest integer $r\\ge 1$ for which any partial symmetric matrix which is completable to a correlation matrix and whose entries are specified at the positions of the edges of $G$, can be completed to a matrix in the convex hull of correlation matrices of $\\rank $ at most $r$. This graph parameter is motivated by its relevance to the bounded rank Grothendieck constant: $egd(G) \\le r$ if and only if the rank-$r$ Grothendieck constant of $G$ is equal to 1. The parameter $egd(G)$ is minor monotone. We identify several classes of forbidden minors for $egd(G)\\le r$ and give the full characterization for the case $r=2$. We show an upper bound for $egd(G)$ in terms of a new tree-width-like parameter $\\sla(G)$, defined as the smallest $r$ for which $G$ is a minor of the strong product of a tree and $K_r$. We show that, for $G\

  14. Linear algebra and matrix analysis for statistics

    CERN Document Server

    Banerjee, Sudipto

    2014-01-01

    Matrices, Vectors, and Their OperationsBasic definitions and notations Matrix addition and scalar-matrix multiplication Matrix multiplication Partitioned matricesThe ""trace"" of a square matrix Some special matricesSystems of Linear EquationsIntroduction Gaussian elimination Gauss-Jordan elimination Elementary matrices Homogeneous linear systems The inverse of a matrixMore on Linear EquationsThe LU decompositionCrout's Algorithm LU decomposition with row interchanges The LDU and Cholesky factorizations Inverse of partitioned matrices The LDU decomposition for partitioned matricesThe Sherman-W

  15. MatrixPlot: visualizing sequence constraints

    DEFF Research Database (Denmark)

    Gorodkin, Jan; Stærfeldt, Hans Henrik; Lund, Ole

    1999-01-01

    MatrixPlot: visualizing sequence constraints. Sub-title Abstract Summary : MatrixPlot is a program for making high-quality matrix plots, such as mutual information plots of sequence alignments and distance matrices of sequences with known three-dimensional coordinates. The user can add information...... about the sequences (e.g. a sequence logo profile) along the edges of the plot, as well as zoom in on any region in the plot. Availability : MatrixPlot can be obtained on request, and can also be accessed online at http://www. cbs.dtu.dk/services/MatrixPlot. Contact : gorodkin@cbs.dtu.dk...

  16. The q-Laguerre matrix polynomials.

    Science.gov (United States)

    Salem, Ahmed

    2016-01-01

    The Laguerre polynomials have been extended to Laguerre matrix polynomials by means of studying certain second-order matrix differential equation. In this paper, certain second-order matrix q-difference equation is investigated and solved. Its solution gives a generalized of the q-Laguerre polynomials in matrix variable. Four generating functions of this matrix polynomials are investigated. Two slightly different explicit forms are introduced. Three-term recurrence relation, Rodrigues-type formula and the q-orthogonality property are given.

  17. Singular Value Decomposition for Unitary Symmetric Matrix

    Institute of Scientific and Technical Information of China (English)

    ZOUHongxing; WANGDianjun; DAIQionghai; LIYanda

    2003-01-01

    A special architecture called unitary sym-metric matrix which embodies orthogonal, Givens, House-holder, permutation, and row (or column) symmetric ma-trices as its special cases, is proposed, and a precise corre-spondence of singular values and singular vectors between the unitary symmetric matrix and its mother matrix is de-rived. As an illustration of potential, it is shown that, for a class of unitary symmetric matrices, the singular value decomposition (SVD) using the mother matrix rather than the unitary symmetric matrix per se can save dramatically the CPU time and memory without loss of any numerical precision.

  18. MatrixPlot: visualizing sequence constraints

    DEFF Research Database (Denmark)

    Gorodkin, Jan; Stærfeldt, Hans Henrik; Lund, Ole

    1999-01-01

    MatrixPlot: visualizing sequence constraints. Sub-title Abstract Summary : MatrixPlot is a program for making high-quality matrix plots, such as mutual information plots of sequence alignments and distance matrices of sequences with known three-dimensional coordinates. The user can add information...... about the sequences (e.g. a sequence logo profile) along the edges of the plot, as well as zoom in on any region in the plot. Availability : MatrixPlot can be obtained on request, and can also be accessed online at http://www. cbs.dtu.dk/services/MatrixPlot. Contact : gorodkin@cbs.dtu.dk...

  19. 76 FR 72869 - Proposed Establishment of Restricted Areas R-5402, R-5403A, R-5403B, R-5403C, R-5403D, R-5403E...

    Science.gov (United States)

    2011-11-28

    ... Federal Aviation Administration 14 CFR Part 73 Proposed Establishment of Restricted Areas R-5402, R-5403A, R- 5403B, R-5403C, R-5403D, R-5403E, and R-5403F; Devils Lake, ND AGENCY: Federal Aviation... Camp Grafton Range, the existing R-5401 restricted area surrounding the range is inadequate to...

  20. A reduced-scaling density matrix-based method for the computation of the vibrational Hessian matrix at the self-consistent field level

    Energy Technology Data Exchange (ETDEWEB)

    Kussmann, Jörg; Luenser, Arne; Beer, Matthias; Ochsenfeld, Christian, E-mail: christian.ochsenfeld@uni-muenchen.de [Chair of Theoretical Chemistry, Department of Chemistry, University of Munich (LMU), Butenandtstr. 7, D-81377 München (Germany)

    2015-03-07

    An analytical method to calculate the molecular vibrational Hessian matrix at the self-consistent field level is presented. By analysis of the multipole expansions of the relevant derivatives of Coulomb-type two-electron integral contractions, we show that the effect of the perturbation on the electronic structure due to the displacement of nuclei decays at least as r{sup −2} instead of r{sup −1}. The perturbation is asymptotically local, and the computation of the Hessian matrix can, in principle, be performed with O(N) complexity. Our implementation exhibits linear scaling in all time-determining steps, with some rapid but quadratic-complexity steps remaining. Sample calculations illustrate linear or near-linear scaling in the construction of the complete nuclear Hessian matrix for sparse systems. For more demanding systems, scaling is still considerably sub-quadratic to quadratic, depending on the density of the underlying electronic structure.

  1. Baxter-Belavin R-matrices as non-abelian generalization of elliptic functions

    CERN Document Server

    Levin, A; Zotov, A

    2015-01-01

    It was shown in our previous paper that quantum ${\\rm gl}_N$ $R$-matrices satisfy noncommutative analogues of the Fay identities in ${\\rm gl}_N^{\\otimes 3}$. In this paper we extend the list of $R$-matrix valued elliptic function identities. We propose counterparts of the Fay identities in ${\\rm gl}_N^{\\otimes 2}$, the symmetry between the Planck constant and the spectral parameter, quasi-periodicities with respect to these variables, the Kronecker double series representation of the R-matrix. As an application we construct $R$-matrix valued $2N^2\\times 2N^2$ Lax pairs for the Painlev\\'e VI equation (in the elliptic form) with four free constants using ${\\mathbb Z}_N\\times {\\mathbb Z}_N$ elliptic $R$-matrix. More precisely, the four free constants case appears for an odd $N$ while even $N$'s correspond to a single constant.

  2. An R implementation of a Recurrent Neural Network Trained by Extended Kalman Filter

    Directory of Open Access Journals (Sweden)

    Bogdan Oancea

    2016-06-01

    Full Text Available Nowadays there are several techniques used for forecasting with different performances and accuracies. One of the most performant techniques for time series prediction is neural networks. The accuracy of the predictions greatly depends on the network architecture and training method. In this paper we describe an R implementation of a recurrent neural network trained by the Extended Kalman Filter. For the implementation of the network we used the Matrix package that allows efficient vector-matrix and matrix-matrix operations. We tested the performance of our R implementation comparing it with a pure C++ implementation and we showed that R can achieve about 75% of the C++ programs. Considering the other advantages of R, our results recommend R as a serious alternative to classical programming languages for high performance implementations of neural networks.

  3. J. R. R. Tolkien. A Marxist Reading

    OpenAIRE

    Stefán Gestur Stefánsson 1982

    2014-01-01

    J. R. R. Tolkien is a world renowned writer that is credited with the revival of the fantasy genre with his hobbit driven epics. His works have sold in the hundreds of millions and his novels have been transposed to films and comics which have been successful in their own right. With such exposure it is inevitable for his works to exert an influence on its audience. To criticize Tolkien’s work with the aim of getting a fuller understanding of both the author J. R. R. Tolkien and his works cal...

  4. An upper bound for the ℒ P norm of a GCD-related matrix

    Directory of Open Access Journals (Sweden)

    2006-01-01

    Full Text Available We find an upper bound for the ℓ p norm of the n × n matrix whose ij entry is ( i , j s / [ i , j ] r , where ( i , j and [ i , j ] are the greatest common divisor and the least common multiple of i and j and where r and s are real numbers. In fact, we show that if 1/p$"> r > 1 / p and s < r − 1 / p , then ‖ ( ( i , j s / [ i , j ] r n × n ‖ p < ζ ( r p 2 / p ζ ( r p − s p 1 / p / ζ ( 2 r p 1 / p for all positive integers n , where ζ is the Riemann zeta function.

  5. Sparse Matrix Inversion with Scaled Lasso

    CERN Document Server

    Sun, Tingni

    2012-01-01

    We propose a new method of learning a sparse nonnegative-definite target matrix. Our primary example of the target matrix is the inverse of a population covariance matrix or correlation matrix. The algorithm first estimates each column of the matrix by scaled Lasso, a joint estimation of regression coefficients and noise level, and then adjusts the matrix estimator to be symmetric. The procedure is efficient in the sense that the penalty level of the scaled Lasso for each column is completely determined by the data via convex minimization, without using cross-validation. We prove that this method guarantees the fastest proven rate of convergence in the spectrum norm under conditions of weaker form than those in the existing analyses of other $\\ell_1$ algorithms, and has faster guaranteed rate of convergence when the ratio of the $\\ell_1$ and spectrum norms of the target inverse matrix diverges to infinity. A simulation study also demonstrates the competitive performance of the proposed estimator.

  6. Interpolation of rational matrix functions

    CERN Document Server

    Ball, Joseph A; Rodman, Leiba

    1990-01-01

    This book aims to present the theory of interpolation for rational matrix functions as a recently matured independent mathematical subject with its own problems, methods and applications. The authors decided to start working on this book during the regional CBMS conference in Lincoln, Nebraska organized by F. Gilfeather and D. Larson. The principal lecturer, J. William Helton, presented ten lectures on operator and systems theory and the interplay between them. The conference was very stimulating and helped us to decide that the time was ripe for a book on interpolation for matrix valued functions (both rational and non-rational). When the work started and the first partial draft of the book was ready it became clear that the topic is vast and that the rational case by itself with its applications is already enough material for an interesting book. In the process of writing the book, methods for the rational case were developed and refined. As a result we are now able to present the rational case as an indepe...

  7. Solid-matrix luminescence analysis

    Energy Technology Data Exchange (ETDEWEB)

    Hurtubise, R.J.

    1993-01-15

    Several interactions with lumiphors adsorbed on filter paper were elucidated from experiments with moisture, modulus and heavy-atom salts. The data were interpreted using static and dynamic quenching models, heavy-atom theory, and a theory related to the modulus of paper. With cyclodextrin-salt matrices, it was shown that 10% [alpha]-cyclodextrin/NaCl was very effective for obtaining strong room-temperature fluorescence and moderate room-temperature phosphorescence from adsorbed stereoisomeric tetrols. Extensive photophysical information was obtained for the four tetrols on 10% [alpha]-cyclodextrin/NaCl. The photophysical information acquired was used to develop a method for characterizing two of the tetrols. Work with model compounds adsorbed on deuterated sodium acetate showed that C-H vibrations in the undeuterated sodium acetate were not responsible for the deactivation of the excited triplet state in the model phosphors investigated. A considerable amount of solution luminescence and solid-matrix luminescence data were compared. The most important finding was that in several cases the room-temperature solid-matrix luminescence quantum yields were greater than the solution low-temperature quantum yield values.

  8. Crystal Frameworks, Matrix-valued Functions and Rigidity Operators

    CERN Document Server

    Power, S C

    2011-01-01

    An introduction and survey is given of some recent work on the infinitesimal dynamics of \\textit{crystal frameworks}, that is, of translationally periodic discrete bond-node structures in $\\mathbb{R}^d$, for $ d=2,3,...$. We discuss the rigidity matrix, a fundamental object from finite bar-joint framework theory, rigidity operators, matrix-function representations and low energy phonons. These phonons in material crystals, such as quartz and zeolites, are known as rigid unit modes, or RUMs, and are associated with the relative motions of rigid units, such as ~SiO$_4$ tetrahedra in the tetrahedral polyhedral bond-node model for quartz. We also introduce semi-infinite crystal frameworks, bi-crystal frameworks and associated multi-variable Toeplitz operators.

  9. General linear matrix model, Minkowski spacetime and the Standard Model

    CERN Document Server

    Belyea, Chris

    2010-01-01

    The Hermitian matrix model with general linear symmetry is argued to decouple into a finite unitary matrix model that contains metastable multidimensional lattice configurations and a fermion determinant. The simplest metastable state is a Hermitian Weyl kinetic operator of either handedness on a 3+1 D lattice with general nonlocal interactions. The Hermiticity produces 16 effective Weyl fermions by species doubling, 8 left- and 8 right-handed. These are identified with a Standard Model generation. Only local non-anomalous gauge fields within the soup of general fluctuations can survive at long distances, and the degrees of freedom for gauge fields of an $SU(8)_L X SU(8)_R$ GUT are present. Standard Model gauge symmetries associate with particular species symmetries, for example change of QCD color associates with permutation of doubling status amongst space directions. Vierbein gravity is probably also generated. While fundamental Higgs fields are not possible, low fermion current masses can arise from chira...

  10. The adjacency matrix of one type of graph and the Fibonacci numbers

    CERN Document Server

    Yılmaz, Fatih; Bozkurt, Durmuş

    2012-01-01

    Recently there is huge interest in graph theory and intensive study on computing integer powers of matrices. In this paper, we investigate relationships between one type of graph and well-known Fibonacci sequence. In this content, we consider the adjacency matrix of one type of graph with 2k (k=1,2,...) vertices. It is also known that for any positive integer r, the (i,j)th entry of A^{r} (A is the adjacency matrix of the graph) is just the number of walks from vertex i to vertex j, that use exactly k edges.

  11. R in a nutshell

    CERN Document Server

    Adler, Joseph

    2010-01-01

    Why learn R? Because it's rapidly becoming the standard for developing statistical software. R in a Nutshell provides a quick and practical way to learn this increasingly popular open source language and environment. You'll not only learn how to program in R, but also how to find the right user-contributed R packages for statistical modeling, visualization, and bioinformatics. The author introduces you to the R environment, including the R graphical user interface and console, and takes you through the fundamentals of the object-oriented R language. Then, through a variety of practical examp

  12. ITIL (R) - General Overview

    OpenAIRE

    Jašek, Roman; Králík, Lukáš; Nožička, Jakub

    2015-01-01

    The paper presents the reader into the issue of ITIL (R) and provides it as a basic overview of the concepts, terminology and philosophyof IT Service management. All this information is contained in 5 key ITIL (R) publications on around 1400 pages. The aim therefore is a brief summary of the issue, which also serves as an introduction to the following articles (Differences Between ITIL (R) v2 and ITIL (R) v3, ITIL (R) and Information Security, ITIL (R) Tools and ITIL (R) Implementation).

  13. ITIL (R) - General Overview

    OpenAIRE

    Jašek, Roman; Králík, Lukáš; Nožička, Jakub

    2015-01-01

    The paper presents the reader into the issue of ITIL (R) and provides it as a basic overview of the concepts, terminology and philosophyof IT Service management. All this information is contained in 5 key ITIL (R) publications on around 1400 pages. The aim therefore is a brief summary of the issue, which also serves as an introduction to the following articles (Differences Between ITIL (R) v2 and ITIL (R) v3, ITIL (R) and Information Security, ITIL (R) Tools and ITIL (R) Implementation).

  14. CSR expansions of matrix powers in max algebra

    CERN Document Server

    Sergeev, Sergei

    2009-01-01

    We study the behavior of max-algebraic powers of a reducible nonnegative n by n matrix A. We show that for t>3n^2, the powers A^t can be expanded in max-algebraic powers of the form CS^tR, where C and R are extracted from columns and rows of certain Kleene stars and S is diadonally similar to a Boolean matrix. We study the properties of individual terms and show that all terms, for a given t>3n^2, can be found in O(n^4 log n) operations. We show that the powers have a well-defined ultimate behavior, where certain terms are totally or partially suppressed, thus leading to ultimate CS^tR terms and the corresponding ultimate expansion. We apply this expansion to the question whether {A^ty, t>0} is ultimately linear periodic for each starting vector y, showing that this question can be also answered in O(n^4 log n) time. We give examples illustrating our main results.

  15. Multipole Matrix Elements for Dh-Systems and Their Asymptotics

    Science.gov (United States)

    Tarasov, V. F.

    A “DH-system” is defined as a multidimensional hydrogen atom (or its one-particle analogue), D≥1. Investigating many Coulomb problems in ℝD it is necessary to know exact analytical expressions of multipole matrix elements D for DH-systems, where q=(N, µ) is a set of parameters, N —"principal” and µ — "orbital” quantum numbers. The paper deals with the new method for the evaluation of similar matrix elements using new properties of Appell’s function F2(x, y) to the vicinity of the singular point (1, 1). Such approach allows: 1) to get exact analytical expressions of these matrix elements (considering the selection rules) by means of Appell’s F2 (or Clausen’s 3F2) functions; 2) to reveal “latent” symmetry of diagonal matrix elements with respect to the point k0=-3/2, the above symmetry is connected with the property of Appell’s function F2 (1,1) mirror-like symmetry; 3) to find (exact) asymptotics of the off-diagonal matrix elements in terms of Horn’s function ψ1 (x, y); 4) to prove that the orthogonality of radial functions fNµ (D, r) over N and μ for DH-systems is connected with the properties of Appell’s F2 function to the vicinity of the singular point (1, 1), it generalizes the known result for 3H-atom by Pasternack and Sternheimer, J. Math. Phys. 3, 1280 (1962).

  16. On the Matrix Formulation of Kaiser's Varimax Criterion.

    Science.gov (United States)

    Neudecker, H.

    1981-01-01

    A full-fledged matrix derivation of Sherin's matrix formulation of Kaiser's varimax criterion is provided. Matrix differential calculus is used in conjunction with the Hadamard (or Schur) matrix product. Two results on Hadamard products are presented. (Author/JKS)

  17. Distributed-memory matrix computations

    DEFF Research Database (Denmark)

    Balle, Susanne Mølleskov

    1995-01-01

    in these algorithms is that many scientific applications rely heavily on the performance of the involved dense linear algebra building blocks. Even though we consider the distributed-memory as well as the shared-memory programming paradigm, the major part of the thesis is dedicated to distributed-memory architectures....... We emphasize distributed-memory massively parallel computers - such as the Connection Machines model CM-200 and model CM-5/CM-5E - available to us at UNI-C and at Thinking Machines Corporation. The CM-200 was at the time this project started one of the few existing massively parallel computers...... performance can we expect to achieve? Why? 2.Solving systems of linear equations using a Strassen-type matrix-inversion algorithm. A good way to solve systems of linear equations on massively parallel computers? 3.Aspects of computing the singular value decomposition on the Connec-tion Machine CM-5/CM-5E...

  18. The Biblical Matrix of Economics

    Directory of Open Access Journals (Sweden)

    Grigore PIROŞCĂ

    2012-05-01

    Full Text Available The rationale of this paper is a prime pattern of history of economic thought in the previous ages of classic ancient times of Greek and Roman civilizations using a methodological matrix able to capture the mainstream ideas from social, political and religious events within the pages of Bible. The economic perspective of these events follows the evolution of the seeds of economic thinking within the Fertile Crescent, focused on the Biblical patriarchic heroes’ actions, but also on the empires which their civilization interacted to. The paper aims to discover the path followed by the economic doctrines from the Bible in order to find a match with economic actuality of present days.

  19. Density matrix theory and applications

    CERN Document Server

    Blum, Karl

    2012-01-01

    Written in a clear pedagogic style, this book deals with the application of density matrix theory to atomic and molecular physics. The aim is to precisely characterize sates by a vector and to construct general formulas and proofs of general theorems. The basic concepts and quantum mechanical fundamentals (reduced density matrices, entanglement, quantum correlations) are discussed in a comprehensive way. The discussion leads up to applications like coherence and orientation effects in atoms and molecules, decoherence and relaxation processes. This third edition has been updated and extended throughout and contains a completely new chapter exploring nonseparability and entanglement in two-particle spin-1/2 systems. The text discusses recent studies in atomic and molecular reactions. A new chapter explores nonseparability and entanglement in two-particle spin-1/2 systems.

  20. Practical experience with R32 mixtures as replacement substances for R22 and R502; Praxiserfahrungen mit R32-Gemischen als Austauschstoffe fuer R22 und R502

    Energy Technology Data Exchange (ETDEWEB)

    Schwennesen, K. [Deutsche ICI GmbH, Frankfurt am Main (Germany)

    1995-12-31

    Like R11 and R12, the refrigerant R502 will soon belong to the past and the steps for the prohibition of use of R22 have already been taken. Due to both its thermo-physical properties and its relatively low greenhouse gas potential, R32 is an important part of replacement refrigerants compatible with the ozone layer for both R22 and R502. There is a report on practical experience with R407A and R407C here. (orig.) [Deutsch] Das Kaeltemittel R 502 wird, wie R 11 und R 12, in naechster Zukunft der Vergangenheit angehoeren und auch fuer R 22 sind die Schritte zu Verwendungsverboten bereits festgelegt. R 32 ist sowohl aufgrund seiner thermophysikalischen Eigenschaften als auch wegen seines relative niedrigen Treibhauspotentials eine bedeutende Komponente in ozonvertraeglichen Austauschkaeltemitteln sowohl fuer R 22 als uach fuer R 502. Ueber Praxiserfahrungen mit R 407A und R 407C wird hier berichtet. (orig.)

  1. Relativistic classical integrable tops and quantum R-matrices

    Science.gov (United States)

    Levin, A.; Olshanetsky, M.; Zotov, A.

    2014-07-01

    We describe classical top-like integrable systems arising from the quantum exchange relations and corresponding Sklyanin algebras. The Lax operator is expressed in terms of the quantum non-dynamical R-matrix even at the classical level, where the Planck constant plays the role of the relativistic deformation parameter in the sense of Ruijsenaars and Schneider (RS). The integrable systems (relativistic tops) are described as multidimensional Euler tops, and the inertia tensors are written in terms of the quantum and classical R-matrices. A particular case of gl N system is gauge equivalent to the N-particle RS model while a generic top is related to the spin generalization of the RS model. The simple relation between quantum R-matrices and classical Lax operators is exploited in two ways. In the elliptic case we use the Belavin's quantum R-matrix to describe the relativistic classical tops. Also by the passage to the noncommutative torus we study the large N limit corresponding to the relativistic version of the nonlocal 2d elliptic hydrodynamics. Conversely, in the rational case we obtain a new gl N quantum rational non-dynamical R-matrix via the relativistic top, which we get in a different way — using the factorized form of the RS Lax operator and the classical Symplectic Hecke (gauge) transformation. In particular case of gl2 the quantum rational R-matrix is 11-vertex. It was previously found by Cherednik. At last, we describe the integrable spin chains and Gaudin models related to the obtained R-matrix.

  2. The influence of MicroRNA-150 in Osteoblast Matrix Mineralization.

    Science.gov (United States)

    Dong, Chun-Ling; Liu, Hao-Zhi; Zhang, Zhen-Chun; Zhao, Huan-Li; Zhao, Hui; Huang, Yan; Yao, Jian-Hua; Sun, Tian-Sheng

    2015-12-01

    This study investigated the influence of miR-150 expression on osteoblast matrix mineralization and its mechanisms. The mouse osteoblast cell line MC3T3-E1 was used as an in vitro model of bone formation. On the fifth day of mineralization, transfection experiments using agomiR-150, agomiR-NC, antagomiR-150 antagomiR-NC, and mock groups were set up to test the effects of miR-150 in MC3T3-E1 model. The mRNA and protein levels of OC, ALP, type I collagen, and OPN were measured by qRT-PCR and ELISA. Matrix mineralization was detected by alizarin red S (ARS) staining and flow cytometry was employed to quantify apoptosis in each group. RT-PCR and Western blot were applied to detect the expression of target gene MMP14. Our results demonstrated that the endogenous expression levels of miR-150, OC, ALP, type I collagen, and OPN in MC3T3-E1 cells increased steadily. Exogenous expressions of agomiR-150 and antagomiR-150 can significantly up-/down-regulate, respectively, the expression level of miR-150 in MC3T3-E1 cells. Compared with the mock group, higher expression levels of OC, ALP, type I collagen, and OPN mRNA were observed in the agomiR-150 group, while lower mRNA expression levels of OC, ALP, type I collagen, and OPN were found in the antagomiR-150 group. Based on these results, potential miR-150 targeted genes are discussed. Our results showed that miR-150 supports the osteoblastic phenotype related to osteoblast function and bone mineralization. Thus, miR-150 may have potential therapeutic applications in promoting bone formation in certain disease settings, such as in osteoporosis and in elderly patients.

  3. Matrix-valued polynomials in Lanczos type methods

    Energy Technology Data Exchange (ETDEWEB)

    Simoncini, V. [Universita di Padova (Italy); Gallopoulos, E. [Univ. of Illinois, Urbana, IL (United States)

    1994-12-31

    It is well known that convergence properties of iterative methods can be derived by studying the behavior of the residual polynomial over a suitable domain of the complex plane. Block Krylov subspace methods for the solution of linear systems A[x{sub 1},{hor_ellipsis}, x{sub s}] = [b{sub 1},{hor_ellipsis}, b{sub s}] lead to the generation of residual polynomials {phi}{sub m} {element_of} {bar P}{sub m,s} where {bar P}{sub m,s} is the subset of matrix-valued polynomials of maximum degree m and size s such that {phi}{sub m}(0) = I{sub s}, R{sub m} := B - AX{sub m} = {phi}{sub m}(A) {circ} R{sub 0}, where {phi}{sub m}(A) {circ} R{sub 0} := R{sub 0} - A{summation}{sub j=0}{sup m-1} A{sup j}R{sub 0}{xi}{sub j}, {xi}{sub j} {element_of} R{sup sxs}. An effective method has to balance adequate approximation with economical computation of iterates defined by the polynomial. Matrix valued polynomials can be used to improve the performance of block methods. Another approach is to solve for a single right-hand side at a time and use the generated information in order to update the approximations of the remaining systems. In light of this, a more general scheme is as follows: A subset of residuals (seeds) is selected and a block short term recurrence method is used to compute approximate solutions for the corresponding systems. At the same time the generated matrix valued polynomial is implicitly applied to the remaining residuals. Subsequently a new set of seeds is selected and the process is continued as above, till convergence of all right-hand sides. The use of a quasi-minimization technique ensures a smooth convergence behavior for all systems. In this talk the authors discuss the implementation of this class of algorithms and formulate strategies for the selection of parameters involved in the computation. Experiments and comparisons with other methods will be presented.

  4. (d, r, z]-disjunct matrices with Error-Tolerance on the Projective Plane with n Order%n阶射影平面上可容错的(d,r;z]-disjunct.矩阵

    Institute of Scientific and Technical Information of China (English)

    赵红海; 康丽坤

    2012-01-01

    一个(d,r;z]-disjunct矩阵在许多领域有着极为广泛的应用.利用n阶射影平面的性质构作了(d,r;z]-disjunct矩阵,并研究了它的检错性和纠错性.%A (d, r, z]-disjunct matrix is widely used in many areas. With the properties of the projective plane with n order , A (d,r,z]-disjunct matrix and A (d,z)-separable matrix are constructed and error-detecting and error-correcting are studied.

  5. Associative Yang-Baxter equation for quantum (semi-)dynamical R-matrices

    Science.gov (United States)

    Sechin, Ivan; Zotov, Andrei

    2016-05-01

    In this paper we propose versions of the associative Yang-Baxter equation and higher order R-matrix identities which can be applied to quantum dynamical R-matrices. As is known quantum non-dynamical R-matrices of Baxter-Belavin type satisfy this equation. Together with unitarity condition and skew-symmetry it provides the quantum Yang-Baxter equation and a set of identities useful for different applications in integrable systems. The dynamical R-matrices satisfy the Gervais-Neveu-Felder (or dynamical Yang-Baxter) equation. Relation between the dynamical and non-dynamical cases is described by the IRF (interaction-round-a-face)-Vertex transformation. An alternative approach to quantum (semi-)dynamical R-matrices and related quantum algebras was suggested by Arutyunov, Chekhov, and Frolov (ACF) in their study of the quantum Ruijsenaars-Schneider model. The purpose of this paper is twofold. First, we prove that the ACF elliptic R-matrix satisfies the associative Yang-Baxter equation with shifted spectral parameters. Second, we directly prove a simple relation of the IRF-Vertex type between the Baxter-Belavin and the ACF elliptic R-matrices predicted previously by Avan and Rollet. It provides the higher order R-matrix identities and an explanation of the obtained equations through those for non-dynamical R-matrices. As a by-product we also get an interpretation of the intertwining transformation as matrix extension of scalar theta function likewise R-matrix is interpreted as matrix extension of the Kronecker function. Relations to the Gervais-Neveu-Felder equation and identities for the Felder's elliptic R-matrix are also discussed.

  6. Associative Yang-Baxter equation for quantum (semi-)dynamical R-matrices

    Energy Technology Data Exchange (ETDEWEB)

    Sechin, Ivan, E-mail: shnbuz@gmail.com, E-mail: zotov@mi.ras.ru [MIPT, Inststitutskii per. 9, Dolgoprudny, Moscow Region 141700 (Russian Federation); ITEP, B. Cheremushkinskaya Str. 25, Moscow 117218 (Russian Federation); Zotov, Andrei, E-mail: shnbuz@gmail.com, E-mail: zotov@mi.ras.ru [MIPT, Inststitutskii per. 9, Dolgoprudny, Moscow Region 141700 (Russian Federation); ITEP, B. Cheremushkinskaya Str. 25, Moscow 117218 (Russian Federation); Steklov Mathematical Institute RAS, Gubkina Str. 8, Moscow 119991 (Russian Federation)

    2016-05-15

    In this paper we propose versions of the associative Yang-Baxter equation and higher order R-matrix identities which can be applied to quantum dynamical R-matrices. As is known quantum non-dynamical R-matrices of Baxter-Belavin type satisfy this equation. Together with unitarity condition and skew-symmetry it provides the quantum Yang-Baxter equation and a set of identities useful for different applications in integrable systems. The dynamical R-matrices satisfy the Gervais-Neveu-Felder (or dynamical Yang-Baxter) equation. Relation between the dynamical and non-dynamical cases is described by the IRF (interaction-round-a-face)-Vertex transformation. An alternative approach to quantum (semi-)dynamical R-matrices and related quantum algebras was suggested by Arutyunov, Chekhov, and Frolov (ACF) in their study of the quantum Ruijsenaars-Schneider model. The purpose of this paper is twofold. First, we prove that the ACF elliptic R-matrix satisfies the associative Yang-Baxter equation with shifted spectral parameters. Second, we directly prove a simple relation of the IRF-Vertex type between the Baxter-Belavin and the ACF elliptic R-matrices predicted previously by Avan and Rollet. It provides the higher order R-matrix identities and an explanation of the obtained equations through those for non-dynamical R-matrices. As a by-product we also get an interpretation of the intertwining transformation as matrix extension of scalar theta function likewise R-matrix is interpreted as matrix extension of the Kronecker function. Relations to the Gervais-Neveu-Felder equation and identities for the Felder’s elliptic R-matrix are also discussed.

  7. Introduction to matrix analysis and applications

    CERN Document Server

    Hiai, Fumio

    2014-01-01

    Matrices can be studied in different ways. They are a linear algebraic structure and have a topological/analytical aspect (for example, the normed space of matrices) and they also carry an order structure that is induced by positive semidefinite matrices. The interplay of these closely related structures is an essential feature of matrix analysis. This book explains these aspects of matrix analysis from a functional analysis point of view. After an introduction to matrices and functional analysis, it covers more advanced topics such as matrix monotone functions, matrix means, majorization and entropies. Several applications to quantum information are also included. Introduction to Matrix Analysis and Applications is appropriate for an advanced graduate course on matrix analysis, particularly aimed at studying quantum information. It can also be used as a reference for researchers in quantum information, statistics, engineering and economics.

  8. Optimized Projection Matrix for Compressive Sensing

    Directory of Open Access Journals (Sweden)

    Jianping Xu

    2010-01-01

    Full Text Available Compressive sensing (CS is mainly concerned with low-coherence pairs, since the number of samples needed to recover the signal is proportional to the mutual coherence between projection matrix and sparsifying matrix. Until now, papers on CS always assume the projection matrix to be a random matrix. In this paper, aiming at minimizing the mutual coherence, a method is proposed to optimize the projection matrix. This method is based on equiangular tight frame (ETF design because an ETF has minimum coherence. It is impossible to solve the problem exactly because of the complexity. Therefore, an alternating minimization type method is used to find a feasible solution. The optimally designed projection matrix can further reduce the necessary number of samples for recovery or improve the recovery accuracy. The proposed method demonstrates better performance than conventional optimization methods, which brings benefits to both basis pursuit and orthogonal matching pursuit.

  9. Eigenvalues properties of terms correspondences matrix

    Science.gov (United States)

    Bondarchuk, Dmitry; Timofeeva, Galina

    2016-12-01

    Vector model representations of text documents are widely used in the intelligent search. In this approach a collection of documents is represented in the form of the term-document matrix, reflecting the frequency of terms. In the latent semantic analysis the dimension of the vector space is reduced by the singular value decomposition of the term-document matrix. Authors use a matrix of terms correspondences, reflecting the relationship between the terms, to allocate a semantic core and to obtain more simple presentation of the documents. With this approach, reducing the number of terms is based on the orthogonal decomposition of the matrix of terms correspondences. Properties of singular values of the term-document matrix and eigenvalues of the matrix of terms correspondences are studied in the case when documents differ substantially in length.

  10. Matrix multiplication on the Intel Touchstone Delta

    Energy Technology Data Exchange (ETDEWEB)

    Huss-Lederman, S.; Jacobson, E.M.; Tsao, A. [Supercomputing Research Center, Bowie, MD (United States); Zhang, G. [CONVEX Computer Corp., Richardson, TX (United States)

    1993-12-31

    Matrix multiplication is a key primitive in block matrix algorithms such as those found in LAPACK. We present results from our study of matrix multiplication algorithms on the Intel Touchstone Delta, a distributed memory message-passing architecture with a two-dimensional mesh topology. We obtain an implementation that uses communication primitives highly suited to the Delta and exploits the single node assembly-coded matrix multiplication. Our algorithm is completely general, able to deal with arbitrary mesh aspect ratios and matrix dimensions, and has achieved parallel efficiency of 86% with overall peak performance in excess of 8 Gflops on 256 nodes for an 8800 {times} 8800 matrix. We describe our algorithm design and implementation, and present performance results that demonstrate scalability and robust behavior over varying mesh topologies.

  11. Fourier-Legendre expansion of the one-electron density-matrix of ground-state two-electron atoms

    OpenAIRE

    Ragot, Sebastien; Ruiz, Maria Belen

    2009-01-01

    The density-matrix rho(r, r') of a spherically symmetric system can be expanded as a Fourier-Legendre series of Legendre polynomials Pl(cos(theta) = r.r'/rr'). Application is here made to harmonically trapped electron pairs (i.e. Moshinsky's and Hooke's atoms), for which exact wavefunctions are known, and to the helium atom, using a near-exact wavefunction. In the present approach, generic closed form expressions are derived for the series coefficients of rho(r, r'). The series expansions are...

  12. Riemann--Hilbert problems, matrix orthogonal polynomials and discrete matrix equations with singularity confinement

    CERN Document Server

    Cassatella-Contra, Giovanni A

    2011-01-01

    In this paper matrix orthogonal polynomials in the real line are described in terms of a Riemann--Hilbert problem. This approach provides an easy derivation of discrete equations for the corresponding matrix recursion coefficients. The discrete equation is explicitly derived in the matrix Freud case, associated with matrix quartic potentials. It is shown that, when the initial condition and the measure are simultaneously triangularizable, this matrix discrete equation possesses the singularity confinement property, independently if the solution under consideration is given by recursion coefficients to quartic Freud matrix orthogonal polynomials or not.

  13. Micromechanical Evaluation of Ceramic Matrix Composites

    Science.gov (United States)

    1991-02-01

    Materials Sciences Corporation AD-A236 756 M.hM. 9 1 0513 IEIN HIfINU IIl- DTIC JUN 06 1991 MICROMECHANICAL EVALUATION OF S 0 CERAMIC MATRIX COMPOSITES C...Classification) \\() Micromechanical Evaluation of Ceramic Matrix Composites ) 12. PERSONAL AUTHOR(S) C-F. Yen, Z. Hashin, C. Laird, B.W. Rosen, Z. Wang 13a. TYPE...and strengthen the ceramic composites. In this task, various possibilities of crack propagation in unidirectional ceramic matrix composites under

  14. String Interactions in c=1 Matrix Model

    CERN Document Server

    De Boer, J; Verlinde, E; Yee, J T; Boer, Jan de; Sinkovics, Annamaria; Verlinde, Erik; Yee, Jung-Tay

    2004-01-01

    We study string interactions in the fermionic formulation of the c=1 matrix model. We give a precise nonperturbative description of the rolling tachyon state in the matrix model, and discuss S-matrix elements of the c=1 string. As a first step to study string interactions, we compute the interaction of two decaying D0-branes in terms of free fermions. This computation is compared with the string theory cylinder diagram using the rolling tachyon ZZ boundary states.

  15. Imposing causality on a matrix model

    Energy Technology Data Exchange (ETDEWEB)

    Benedetti, Dario [Perimeter Institute for Theoretical Physics, 31 Caroline St. N, N2L 2Y5, Waterloo ON (Canada)], E-mail: dbenedetti@perimeterinstitute.ca; Henson, Joe [Perimeter Institute for Theoretical Physics, 31 Caroline St. N, N2L 2Y5, Waterloo ON (Canada)

    2009-07-13

    We introduce a new matrix model that describes Causal Dynamical Triangulations (CDT) in two dimensions. In order to do so, we introduce a new, simpler definition of 2D CDT and show it to be equivalent to the old one. The model makes use of ideas from dually weighted matrix models, combined with multi-matrix models, and can be studied by the method of character expansion.

  16. Query Through Heterogeneous Ontologies Using Association Matrix

    Institute of Scientific and Technical Information of China (English)

    KANG Da-zhou; XU Bao-wen; LU Jian-jiang; WANG Peng; LI Yan-hui

    2004-01-01

    This paper introduces the definition and calculation of the association matrix between ontologies.It uses the association matrix to describe the relations between concepts in different ontologies and uses concept vectors to represent queries; then computes the vectors with the association matrix in order to rewrite queries.This paper proposes a simple method of querying through heterogeneous Ontology using association matrix.This method is based on the correctness of approximate information filtering theory; and it is simple to be implemented and expected to run quite fast.

  17. Multiscale Modeling of Ceramic Matrix Composites

    Science.gov (United States)

    Bednarcyk, Brett A.; Mital, Subodh K.; Pineda, Evan J.; Arnold, Steven M.

    2015-01-01

    Results of multiscale modeling simulations of the nonlinear response of SiC/SiC ceramic matrix composites are reported, wherein the microstructure of the ceramic matrix is captured. This micro scale architecture, which contains free Si material as well as the SiC ceramic, is responsible for residual stresses that play an important role in the subsequent thermo-mechanical behavior of the SiC/SiC composite. Using the novel Multiscale Generalized Method of Cells recursive micromechanics theory, the microstructure of the matrix, as well as the microstructure of the composite (fiber and matrix) can be captured.

  18. Risk matrix model for rotating equipment

    Directory of Open Access Journals (Sweden)

    Wassan Rano Khan

    2014-07-01

    Full Text Available Different industries have various residual risk levels for their rotating equipment. Accordingly the occurrence rate of the failures and associated failure consequences categories are different. Thus, a generalized risk matrix model is developed in this study which can fit various available risk matrix standards. This generalized risk matrix will be helpful to develop new risk matrix, to fit the required risk assessment scenario for rotating equipment. Power generation system was taken as case study. It was observed that eight subsystems were under risk. Only vibration monitor system was under high risk category, while remaining seven subsystems were under serious and medium risk categories.

  19. Basic matrix algebra and transistor circuits

    CERN Document Server

    Zelinger, G

    1963-01-01

    Basic Matrix Algebra and Transistor Circuits deals with mastering the techniques of matrix algebra for application in transistors. This book attempts to unify fundamental subjects, such as matrix algebra, four-terminal network theory, transistor equivalent circuits, and pertinent design matters. Part I of this book focuses on basic matrix algebra of four-terminal networks, with descriptions of the different systems of matrices. This part also discusses both simple and complex network configurations and their associated transmission. This discussion is followed by the alternative methods of de

  20. New recursive algorithm for matrix inversion

    Institute of Scientific and Technical Information of China (English)

    Cao Jianshu; Wang Xuegang

    2008-01-01

    To reduce the computational complexity of matrix inversion, which is the majority of processing in many practical applications, two numerically efficient recursive algorithms (called algorithms Ⅰ and Ⅱ, respectively)are presented. Algorithm Ⅰ is used to calculate the inverse of such a matrix, whose leading principal minors are all nonzero. Algorithm Ⅱ, whereby, the inverse of an arbitrary nonsingular matrix can be evaluated is derived via improving the algorithm Ⅰ. The implementation, for algorithm Ⅱ or Ⅰ, involves matrix-vector multiplications and vector outer products. These operations are computationally fast and highly parallelizable. MATLAB simulations show that both recursive algorithms are valid.

  1. A random matrix theory of decoherence

    Science.gov (United States)

    Gorin, T.; Pineda, C.; Kohler, H.; Seligman, T. H.

    2008-11-01

    Random matrix theory is used to represent generic loss of coherence of a fixed central system coupled to a quantum-chaotic environment, represented by a random matrix ensemble, via random interactions. We study the average density matrix arising from the ensemble induced, in contrast to previous studies where the average values of purity, concurrence and entropy were considered; we further discuss when one or the other approach is relevant. The two approaches agree in the limit of large environments. Analytic results for the average density matrix and its purity are presented in linear response approximation. The two-qubit system is analysed, mainly numerically, in more detail.

  2. A random matrix theory of decoherence

    Energy Technology Data Exchange (ETDEWEB)

    Gorin, T [Departamento de FIsica, Universidad de Guadalajara, Blvd Marcelino GarcIa Barragan y Calzada OlImpica, Guadalajara CP 44840, JalIsco (Mexico); Pineda, C [Institut fuer Physik und Astronomie, University of Potsdam, 14476 Potsdam (Germany); Kohler, H [Fachbereich Physik, Universitaet Duisburg-Essen, D-47057 Duisburg (Germany); Seligman, T H [Instituto de Ciencias FIsicas, Universidad Nacional Autonoma de Mexico (Mexico)], E-mail: thomas.gorin@red.cucei.udg.mx, E-mail: carlospgmat03@gmail.com

    2008-11-15

    Random matrix theory is used to represent generic loss of coherence of a fixed central system coupled to a quantum-chaotic environment, represented by a random matrix ensemble, via random interactions. We study the average density matrix arising from the ensemble induced, in contrast to previous studies where the average values of purity, concurrence and entropy were considered; we further discuss when one or the other approach is relevant. The two approaches agree in the limit of large environments. Analytic results for the average density matrix and its purity are presented in linear response approximation. The two-qubit system is analysed, mainly numerically, in more detail.

  3. Developed Matrix inequalities via Positive Multilinear Mappings

    OpenAIRE

    Dehghani, Mahdi; Kian, Mohsen; Seo, Yuki

    2015-01-01

    Utilizing the notion of positive multilinear mappings, we give some matrix inequalities. In particular, Choi--Davis--Jensen and Kantorovich type inequalities including positive multilinear mappings are presented.

  4. Matrix Krylov subspace methods for image restoration

    Directory of Open Access Journals (Sweden)

    khalide jbilou

    2015-09-01

    Full Text Available In the present paper, we consider some matrix Krylov subspace methods for solving ill-posed linear matrix equations and in those problems coming from the restoration of blurred and noisy images. Applying the well known Tikhonov regularization procedure leads to a Sylvester matrix equation depending the Tikhonov regularized parameter. We apply the matrix versions of the well known Krylov subspace methods, namely the Least Squared (LSQR and the conjugate gradient (CG methods to get approximate solutions representing the restored images. Some numerical tests are presented to show the effectiveness of the proposed methods.

  5. A Generalization of the Alias Matrix

    DEFF Research Database (Denmark)

    Kulahci, Murat; Bisgaard, S.

    2006-01-01

    The investigation of aliases or biases is important for the interpretation of the results from factorial experiments. For two-level fractional factorials this can be facilitated through their group structure. For more general arrays the alias matrix can be used. This tool is traditionally based...... on the assumption that the error structure is that associated with ordinary least squares. For situations where that is not the case, we provide in this article a generalization of the alias matrix applicable under the generalized least squares assumptions. We also show that for the special case of split plot error...... structure, the generalized alias matrix simplifies to the ordinary alias matrix....

  6. Faster Algorithms for Rectangular Matrix Multiplication

    CERN Document Server

    Gall, François Le

    2012-01-01

    Let {\\alpha} be the maximal value such that the product of an n x n^{\\alpha} matrix by an n^{\\alpha} x n matrix can be computed with n^{2+o(1)} arithmetic operations. In this paper we show that \\alpha>0.30298, which improves the previous record \\alpha>0.29462 by Coppersmith (Journal of Complexity, 1997). More generally, we construct a new algorithm for multiplying an n x n^k matrix by an n^k x n matrix, for any value k\

  7. Titanium Matrix Composite Pressure Vessel Project

    Data.gov (United States)

    National Aeronautics and Space Administration — For over 15 years, FMW Composite Systems has developed Metal Matrix Composite manufacturing methodologies for fabricating silicon-carbide-fiber-reinforced titanium...

  8. Solutions of Nonlinear Matrix Equations.

    Science.gov (United States)

    1985-12-01

    Annals of Mathematics . second series 18: 4-6 (1916-1917). 4. Casti, John L. Dynamical Systems and Their...Systems. CAS-25: 766-771 (September 1978). 22. Macloskie, S. "A General Method of Evaluating Determinants," Annals of Mathematics . 6: 30 (October 1904...Polynomials," Annals of Mathematics . second series 18: 188-193 (1916-1917). 28. Penrose, R. "A generalized inverse for matrices," Proceedinas of the

  9. Matrix Riccati equation formulation for radiative transfer in a plane-parallel geometry

    Science.gov (United States)

    Chang, Hung-Wen; Wu, Tso-Lun

    1997-01-01

    In this paper, we formulate the radiative transfer problem as an initial value problem via a pair of nonlinear matrix differential equations (matrix Riccati equations or MREs) which describe the reflection ( R) and transmission ( T) matrices of the specific intensities in a plane-parallel geometry. One first computes R and T matrices of some small but finite layer thickness (equivalent optical thickness 0959-7174/7/1/009/img1) and then repetitively applies the doubling method to the reflection and transmission matrices 0959-7174/7/1/009/img2 and 0959-7174/7/1/009/img3 until reaching the desired layer thickness. The initial matrices 0959-7174/7/1/009/img4 and 0959-7174/7/1/009/img5 can be computed quite accurately by either of the following methods: multiple-order, multiple-scattering approximation, iterative method or fourth-order Runge - Kutta techniques. In addition, the reflection coefficient matrix of a semi-infinite medium satisfies an algebraic matrix equation which can be solved repetitively by a matrix method. MREs offer an alternative way of solving plane-parallel radiative transport problems. This method requires only elementary matrix operations (addition, multiplication and inversion). For vector and/or beam-wave radiative transfer problems, large matrices are required to describe the physics adequately, and the MRE method provides a significant reduction in computer memory and computation time.

  10. BiplotGUI: Interactive Biplots in R

    Directory of Open Access Journals (Sweden)

    Anthony la Grange

    2009-06-01

    Full Text Available Biplots simultaneously provide information on both the samples and the variables ofa data matrix in two- or three-dimensional representations. The BiplotGUI package provides a graphical user interface for the construction of, interaction with, and manipulation of biplots in R. The samples are represented as points, with coordinates determined either by the choice of biplot, principal coordinate analysis or multidimensional scaling. Various transformations and dissimilarity metrics are available. Information on the original variables is incorporated by linear or non-linear calibrated axes. Goodness-of-t measures are provided. Additional descriptors can be superimposed, including convex hulls, alpha-bags, point densities and classication regions. Amongst the interactive features are dynamic variable value prediction, zooming and point and axis drag-and-drop. Output can easily be exported to the R workspace for further manipulation. Three-dimensional biplots are incorporated via the rgl package. The user requires almost no knowledge of R syntax.

  11. Reduction of multipartite qubit density matrixes to bipartite qubit density matrixes and criteria of partial separability of multipartite qubit density matrixes

    OpenAIRE

    Zhong, Zai-Zhe

    2004-01-01

    The partial separability of multipartite qubit density matrixes is strictly defined. We give a reduction way from N-partite qubit density matrixes to bipartite qubit density matrixes, and prove a necessary condition that a N-partite qubit density matrix to be partially separable is its reduced density matrix to satisfy PPT condition.

  12. Reduction of multipartite qubit density matrixes to bipartite qubit density matrixes and criteria of partial separability of multipartite qubit density matrixes

    OpenAIRE

    Zhong, Zai-Zhe

    2004-01-01

    The partial separability of multipartite qubit density matrixes is strictly defined. We give a reduction way from N-partite qubit density matrixes to bipartite qubit density matrixes, and prove a necessary condition that a N-partite qubit density matrix to be partially separable is its reduced density matrix to satisfy PPT condition.

  13. Repair of Traumatic Skeletal Muscle Injury with Bone-Marrow-Derived Mesenchymal Stem Cells Seeded on Extracellular Matrix

    Science.gov (United States)

    2010-06-02

    Hammers D. W., Le L. N., Gokhale R., Sarathy A., Song T. J., Tierney M. T., Suggs L. J., Walters T. J., Farrar R. P., 5d. PROJECT NUMBER 5e. TASK...vivo. Bioma terials 30, 2393, 2009. 65. Beattie, A.J., et al. Chemoattraction of Progenitor Cells by Remodeling Extracellular Matrix Scaffolds

  14. Enamel matrix proteins associated with GTR and bioactive glass in the treatment of class III furcation in dogs Proteína da matriz do esmalte associada a R.T.G. e vidro bioativo no tratamento de furca grau III em cães

    Directory of Open Access Journals (Sweden)

    José Marcos Alves Fernandes

    2005-09-01

    Full Text Available This study investigated, both histologically and histometrically, the efficacy of enamel matrix derived proteins (EMD associated with bioactive glass (BG and an absorbable membrane in the treatment of class III furcation defects in mongrel dogs. After surgical defect creation and chronification, the lesions were randomly divided into three groups according to the treatment employed: Test Group 1 - EMD + BG + membrane, Test Group 2 - EMD + membrane and Control Group - BG + membrane. After a 90-day healing period, the dogs were sacrificed. The descriptive analysis and the histometric data showed similar results for the experimental groups in all studied parameters (MANOVA, p > 0.05. The association of Emdogain® with bioglass and GTR, or with GTR only, showed similar results when compared with the ones obtained with bioglass associated with membrane in the treatment of class III furcation defects in dogs. The three modalities of treatment showed partial filling of the furcations, with bone and cementum regeneration limited to the apical portion of the defects.Este estudo investigou, histológica e histometricamente, a eficácia da proteína derivada da matriz de esmalte (EMD associada com vidro bioativo (BG e membrana absorvível, no tratamento de defeitos de furcas classe III em cães. Após criação cirúrgica e cronificação dos defeitos, as lesões foram divididas aleatoriamente em três grupos de acordo com o tratamento proposto: Grupo Teste 1 - EMD + BG + membrana, Grupo Teste 2 - EMD + membrana e Grupo Controle - BG + membrana. Após 90 dias do período de cicatrização, os cães foram sacrificados. A análise descritiva e os dados histométricos mostraram resultados similares para os grupos experimentais em todos os parâmetros estudados (MANOVA, p > 0,05. As associações de Emdogain com vidro bioativo e RTG, ou somente com RTG, mostraram resultados similares quando comparadas ao vidro bioativo associado à membrana no tratamento de

  15. Higher-order analogues of the unitarity condition for quantum R-matrices

    Science.gov (United States)

    Zotov, A. V.

    2016-11-01

    We derive a family of nth-order identities for quantum R-matrices of the Baxter-Belavin type in the fundamental representation. The set of identities includes the unitarity condition as the simplest case (n = 2). Our study is inspired by the fact that the third-order identity provides commutativity of the Knizhnik-Zamolodchikov-Bernard connections. On the other hand, the same identity yields the R-matrix-valued Lax pairs for classical integrable systems of Calogero type, whose construction uses the interpretation of the quantum R-matrix as a matrix generalization of the Kronecker function. We present a proof of the higher-order scalar identities for the Kronecker functions, which is then naturally generalized to R-matrix identities.

  16. Higher order analogues of unitarity condition for quantum R-matrices

    CERN Document Server

    Zotov, A

    2015-01-01

    We prove a family of $n$-th order identities for quantum $R$-matrices of Baxter-Belavin type in fundamental representation. The set of identities includes the unitarity condition as the simplest one ($n=2$). Our study is inspired by the fact that the third order identity provides commutativity of the Knizhnik-Zamolodchikov-Bernard connections. On the other hand the same identity gives rise to $R$-matrix valued Lax pairs for the classical integrable systems of Calogero type. The latter construction uses interpretation of quantum $R$-matrix as matrix generalization of the Kronecker function. We present a proof of the higher order scalar identities for the Kronecker functions which is then naturally generalized to the $R$-matrix identities.

  17. THE INFLUENCE OF TECHNICAL DEVIATIONS OVER EFFORTS FROM A 4R SPHERICAL QUADRILATERAL MECHANISM

    Directory of Open Access Journals (Sweden)

    Nicolae PANDREA

    2013-05-01

    Full Text Available In the present paper is mechanically defined the notion of technical deviation (geometrical through a matrix of pluckerian coordinates and those influence over the efforts from the 4R spherical quadrilateral mechanism elements.

  18. R graphs cookbook

    CERN Document Server

    Abedin, Jaynal

    2014-01-01

    Targeted at those with an existing familiarity with R programming, this practical guide will appeal directly to programmers interested in learning effective data visualization techniques with R and a wide-range of its associated libraries.

  19. Matrix-fracture interactions in dual porosity simulation

    Energy Technology Data Exchange (ETDEWEB)

    Shook, G.M.

    1996-01-01

    A new method for simulating flow in fractured media is presented which uses a truncated version of the analytical solution to resolve pressure transients in the rock matrix. The point at which the series solution may be truncated is a known function of the problem, and may therefore be readily determined. Furthermore, the functional form of the method is essentially dimension-independent, and implementation of the method requires only minimal modification to an existing dual porosity simulator. Three test cases are presented comparing results from fine grid simulations, Warren and Root simulations, and the new formulation. In each of the three cases presented, excellent agreement with the fine grid simulations is obtained using the new method. The W&R formulation exhibits excessive error throughout the simulated time, first underpredicting outflow rates, and then overpredicting rates. The error using the W&R formulation is largest for 3-D fracture networks, but is large for all cases tested.

  20. Metaprogramming in R

    DEFF Research Database (Denmark)

    Mailund, Thomas

    2017-01-01

    Learn how to manipulate functions and expressions to modify how the R language interprets itself. This book is an introduction to metaprogramming in the R language, so you will write programs to manipulate other programs. Metaprogramming in R shows you how to treat code as data that you can...