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Sample records for pulse sequence design

  1. Neural-network-designed pulse sequences for robust control of singlet-triplet qubits

    Science.gov (United States)

    Yang, Xu-Chen; Yung, Man-Hong; Wang, Xin

    2018-04-01

    Composite pulses are essential for universal manipulation of singlet-triplet spin qubits. In the absence of noise, they are required to perform arbitrary single-qubit operations due to the special control constraint of a singlet-triplet qubit, while in a noisy environment, more complicated sequences have been developed to dynamically correct the error. Tailoring these sequences typically requires numerically solving a set of nonlinear equations. Here we demonstrate that these pulse sequences can be generated by a well-trained, double-layer neural network. For sequences designed for the noise-free case, the trained neural network is capable of producing almost exactly the same pulses known in the literature. For more complicated noise-correcting sequences, the neural network produces pulses with slightly different line shapes, but the robustness against noises remains comparable. These results indicate that the neural network can be a judicious and powerful alternative to existing techniques in developing pulse sequences for universal fault-tolerant quantum computation.

  2. Generalized min-max bound-based MRI pulse sequence design framework for wide-range T1 relaxometry: A case study on the tissue specific imaging sequence.

    Directory of Open Access Journals (Sweden)

    Yang Liu

    Full Text Available This paper proposes a new design strategy for optimizing MRI pulse sequences for T1 relaxometry. The design strategy optimizes the pulse sequence parameters to minimize the maximum variance of unbiased T1 estimates over a range of T1 values using the Cramér-Rao bound. In contrast to prior sequences optimized for a single nominal T1 value, the optimized sequence using our bound-based strategy achieves improved precision and accuracy for a broad range of T1 estimates within a clinically feasible scan time. The optimization combines the downhill simplex method with a simulated annealing process. To show the effectiveness of the proposed strategy, we optimize the tissue specific imaging (TSI sequence. Preliminary Monte Carlo simulations demonstrate that the optimized TSI sequence yields improved precision and accuracy over the popular driven-equilibrium single-pulse observation of T1 (DESPOT1 approach for normal brain tissues (estimated T1 700-2000 ms at 3.0T. The relative mean estimation error (MSE for T1 estimation is less than 1.7% using the optimized TSI sequence, as opposed to less than 7.0% using DESPOT1 for normal brain tissues. The optimized TSI sequence achieves good stability by keeping the MSE under 7.0% over larger T1 values corresponding to different lesion tissues and the cerebrospinal fluid (up to 5000 ms. The T1 estimation accuracy using the new pulse sequence also shows improvement, which is more pronounced in low SNR scenarios.

  3. New MR pulse sequence

    International Nuclear Information System (INIS)

    Harms, S.E.; Flamig, D.P.; Griffey, R.H.

    1990-01-01

    This paper describes a method for fat suppression for three-dimensional MR imaging. The FATS (fat-suppressed acquisition with echo time shortened) sequence employs a pair of opposing adiabatic half-passage RF pulses tuned on fat resonance. The imaging parameters are as follows: TR, 20 msec; TE, 21.7-3.2 msec; 1,024 x 128 x 128 acquired matrix; imaging time, approximately 11 minutes. A series of 54 examinations were performed. Excellent fat suppression with water excitation is achieved in all cases. The orbital images demonstrate superior resolution of small orbital lesions. The high signal-to-noise ratio (SNR) in cranial studies demonstrates excellent petrous bone and internal auditory canal anatomy

  4. Design of high-power, broadband 180o pulses and mixing sequences for fast MAS solid state chemical shift correlation NMR spectroscopy

    International Nuclear Information System (INIS)

    Herbst, Christian; Herbst, Jirada; Kirschstein, Anika; Leppert, Joerg; Ohlenschlaeger, Oliver; Goerlach, Matthias; Ramachandran, Ramadurai

    2009-01-01

    An approach for the design of high-power, broadband 180 o pulses and mixing sequences for generating dipolar and scalar coupling mediated 13 C- 13 C chemical shift correlation spectra of isotopically labelled biological systems at fast magic-angle spinning frequencies without 1 H decoupling during mixing is presented. Considering RF field strengths in the range of 100-120 kHz, as typically available in MAS probes employed at high spinning speeds, and limited B 1 field inhomogeneities, the Fourier coefficients defining the phase modulation profile of the RF pulses were optimised numerically to obtain broadband inversion and refocussing pulses and mixing sequences. Experimental measurements were carried out to assess the performance characteristics of the mixing sequences reported here

  5. Arbitrarily accurate twin composite π -pulse sequences

    Science.gov (United States)

    Torosov, Boyan T.; Vitanov, Nikolay V.

    2018-04-01

    We present three classes of symmetric broadband composite pulse sequences. The composite phases are given by analytic formulas (rational fractions of π ) valid for any number of constituent pulses. The transition probability is expressed by simple analytic formulas and the order of pulse area error compensation grows linearly with the number of pulses. Therefore, any desired compensation order can be produced by an appropriate composite sequence; in this sense, they are arbitrarily accurate. These composite pulses perform equally well as or better than previously published ones. Moreover, the current sequences are more flexible as they allow total pulse areas of arbitrary integer multiples of π .

  6. Modular pulse sequencing in a tokamak system

    International Nuclear Information System (INIS)

    Chew, A.C.; Lee, S.; Saw, S.H.

    1992-01-01

    Pulse technique applied in the timing and sequencing of the various part of the MUT tokamak system are discussed. The modular architecture of the pulse generating device highlights the versatile application of the simple physical concepts in precise and complicated research experiment. (author)

  7. Pulse sequences and visualization of instruments

    International Nuclear Information System (INIS)

    Merkle, E.M.; Ulm Univ.; Wendt, M.; Chung, Y.C.; Duerk, J.L.; University Hospitals of Cleveland and Case Western Reserve University, OH; Lewin, J.S.

    1998-01-01

    While initially advocated primarily for intrasurgical visualization (e.g., craniotomy), interventional MRI rapidly evolved into roles in image-guided localization for needle-based procedures, minimally invasive neurosurgical procedures, and thermal ablation of cancer. In this contest, MRI pulse sequences and scanning methods serve one of four primary roles: (1) speed improvement, (2) device localization, (3) anatomy/lesion differentiation and (4) temperature sensitivity. The first part of this manuscript deals with passive visualization of MR-compatible needles and the effects of field strength, sequence design, and orientation of the needle relative to the static magnetic field of the scanner. Issues and recommendations are given for low-field as well as high-field scanners. The second part contains methods reported to achieve improved acquisition efficiency over conventional phase encoding (wavelets, locally focused imaging, singular value decomposition and keyhole imaging). Finally, the last part of the manuscrpt reports the current status of thermosensitive sequences and their dependence on spinlattice relaxation time (T1), water diffusion coefficient (D) and proton chemical shift (δ). (orig.) [de

  8. Study and realisation of a programmable generator of pulse sequences, for nuclear magnetic resonance

    International Nuclear Information System (INIS)

    Lambert, Daniel

    1974-01-01

    After having recalled the operation of pulse-based nuclear magnetic resonance and the use of pulse sequences in NMR-based measurements, and outlined the need for a pulse sequence generator, the author reports the design and realisation of such a device. He describes its general organisation with its base sequence, base clock, sequence start, duration, displays, data transfers, data processing, and signal distribution. He presents the chosen technology (ECL logics), the sequence base set, time bases, multiplexers, comparison sets, the distribution set, the sequence programming, the sampling and output set. He reports tests and the use of the so-designed generator [fr

  9. Programmable pulse sequence generator with multiple output lines

    Science.gov (United States)

    Drabczyk, Hubert

    2006-10-01

    This paper presents a novel concept of pulse sequence generator and its prototype as an electronic circuit testing laboratory tool. The generator has multiple output lines and is capable of using control data defining different pulse sequences to be given to the outputs. It is also possible to use different voltage levels in output signal and switch output lines for reading data from driven system. The pulse sequence generator can be used for runtime environment simulation, as hardware tester or auxiliary tool in new designs. Important design factors were to keep cost of the tool low and allow integration with other projects by using flexible architecture. The prototype was based on universal programmer with adjustable power supply, '51 microcontroller and Altera Cyclone chip. The generator communicates witch PC computer via RS232 port. Dedicated software was developed in the course of this project, to control the tool and data transmission. The prototype confirmed the possibility to create an inexpensive multipurpose laboratory tool for programming, testing and simulation of digital devices.

  10. Pulse sequences for contrast-enhanced magnetic resonance imaging

    International Nuclear Information System (INIS)

    Graves, Martin J.

    2007-01-01

    The theory and application of magnetic resonance imaging (MRI) pulse sequences following the administration of an exogenous contrast agent are discussed. Pulse sequences are categorised according to the contrast agent mechanism: changes in proton density, relaxivity, magnetic susceptibility and resonant frequency shift. Applications in morphological imaging, magnetic resonance angiography, dynamic imaging and cell labelling are described. The importance of optimising the pulse sequence for each application is emphasised

  11. Use of the Frank sequence in pulsed EPR

    DEFF Research Database (Denmark)

    Tseitlin, Mark; Quine, Richard W.; Eaton, Sandra S.

    2011-01-01

    The Frank polyphase sequence has been applied to pulsed EPR of triarylmethyl radicals at 256MHz (9.1mT magnetic field), using 256 phase pulses. In EPR, as in NMR, use of a Frank sequence of phase steps permits pulsed FID signal acquisition with very low power microwave/RF pulses (ca. 1.5m......W in the application reported here) relative to standard pulsed EPR. A 0.2mM aqueous solution of a triarylmethyl radical was studied using a 16mm diameter cross-loop resonator to isolate the EPR signal detection system from the incident pulses. Keyword: Correlation spectroscopy,Multi-pulse EPR,Low power pulses,NMR,EPR...

  12. Fat suppression in MR imaging with binomial pulse sequences

    International Nuclear Information System (INIS)

    Baudovin, C.J.; Bryant, D.J.; Bydder, G.M.; Young, I.R.

    1989-01-01

    This paper reports on a study to develop pulse sequences allowing suppression of fat signal on MR images without eliminating signal from other tissues with short T1. They have developed such a technique involving selective excitation of protons in water, based on a binomial pulse sequence. Imaging is performed at 0.15 T. Careful shimming is performed to maximize separation of fat and water peaks. A spin-echo 1,500/80 sequence is used, employing 90 degrees pulse with transit frequency optimized for water with null excitation of 20 H offset, followed by a section-selective 180 degrees pulse. With use of the binomial sequence for imagining, reduction in fat signal is seen on images of the pelvis and legs of volunteers. Patient studies show dramatic improvement in visualization of prostatic carcinoma compared with standard sequences

  13. The Dante pulse sequence description by product operators formalism

    International Nuclear Information System (INIS)

    Velloso, Marcia Helena Rodrigues; Villar, Daniel Figueroa

    1999-01-01

    The objective of this work is to supply a didactic example of the application of the product operators formalism for the description of the DANTE (delays alternating with mutation for tailored excitation) pulse sequence

  14. Estimate of pulse-sequence data acquisition system for multi-dimensional measurement

    International Nuclear Information System (INIS)

    Kitamura, Yasunori; Sakae, Takeji; Nohtomi, Akihiro; Matoba, Masaru; Matsumoto, Yuzuru.

    1996-01-01

    A pulse-sequence data acquisition system has been newly designed and estimated for the measurement of one- or multi-dimensional pulse train coming from radiation detectors. In this system, in order to realize the pulse-sequence data acquisition, the arrival time of each pulse is recorded to a memory of a personal computer (PC). For the multi-dimensional data acquisition with several input channels, each arrival-time data is tagged with a 'flag' which indicates the input channel of arriving pulse. Counting losses due to the existence of processing time of the PC are expected to be reduced by using a First-In-First-Out (FIFO) memory unit. In order to verify this system, a computer simulation was performed, Various sets of random pulse trains with different mean pulse rate (1-600 kcps) were generated by using Monte Carlo simulation technique. Those pulse trains were dealt with another code which simulates the newly-designed data acquisition system including a FIFO memory unit; the memory size was assumed to be 0-100 words. And the recorded pulse trains on the PC with the various FIFO memory sizes have been observed. From the result of the simulation, it appears that the system with 3 words FIFO memory unit works successfully up to the pulse rate of 10 kcps without any severe counting losses. (author)

  15. Estimate of pulse-sequence data acquisition system for multi-dimensional measurement

    Energy Technology Data Exchange (ETDEWEB)

    Kitamura, Yasunori; Sakae, Takeji; Nohtomi, Akihiro; Matoba, Masaru [Kyushu Univ., Fukuoka (Japan). Faculty of Engineering; Matsumoto, Yuzuru

    1996-07-01

    A pulse-sequence data acquisition system has been newly designed and estimated for the measurement of one- or multi-dimensional pulse train coming from radiation detectors. In this system, in order to realize the pulse-sequence data acquisition, the arrival time of each pulse is recorded to a memory of a personal computer (PC). For the multi-dimensional data acquisition with several input channels, each arrival-time data is tagged with a `flag` which indicates the input channel of arriving pulse. Counting losses due to the existence of processing time of the PC are expected to be reduced by using a First-In-First-Out (FIFO) memory unit. In order to verify this system, a computer simulation was performed, Various sets of random pulse trains with different mean pulse rate (1-600 kcps) were generated by using Monte Carlo simulation technique. Those pulse trains were dealt with another code which simulates the newly-designed data acquisition system including a FIFO memory unit; the memory size was assumed to be 0-100 words. And the recorded pulse trains on the PC with the various FIFO memory sizes have been observed. From the result of the simulation, it appears that the system with 3 words FIFO memory unit works successfully up to the pulse rate of 10 kcps without any severe counting losses. (author)

  16. Short Pulse Laser Applications Design

    International Nuclear Information System (INIS)

    Town, R.J.; Clark, D.S.; Kemp, A.J.; Lasinski, B.F.; Tabak, M.

    2008-01-01

    demonstrate FI. Our design work has focused on the NIF, which is the only facility capable of forming a full-scale hydro assembly, and could be adapted for full-scale FI by the conversion of additional beams to short-pulse operation.

  17. Designs of pulsed power cryogenic transformers

    International Nuclear Information System (INIS)

    Singh, S.K.; Heyne, C.J.; Hackowrth, D.T.; Shestak, E.J.; Eckels, P.W.; Rogers, J.D.

    1988-01-01

    The Westinghouse Electric Corporation has completed designs of three pulsed power cryogenic transformers of three pulsed power cryogenic transformers for the Los Alamos National Laboratory. These transformers will be configured to transfer their stored energy sequentially to an electro-magnetic launcher and form a three-stage power supply. The pulse transformers will act as two winding energy storage solenoids which provide a high current and energy pulse compression by transforming a 50 kA power supply into a megamp level power supply more appropriate for the electromagnetic launcher duty. This system differs from more traditional transformer applications in that significant current levels do not exists simultaneously in the two windings of the pulse transformer. This paper describes the designs of the pulsed power cryogenic transformers

  18. Preliminary study of pseudorandom binary sequence pulsing of ORELA

    International Nuclear Information System (INIS)

    Larson, N.M.; Olsen, D.K.

    1980-03-01

    It has been suggested that pseudorandom binary sequence (PRBS) pulsing might enhance the performance of the Oak Ridge Electron Linear Accelerator (ORELA) for neutron-induced, time-of-flight (TOF) cross-section measurements. In this technical memorandum, equations are developed for expected count rates, statistical variances, and backgrounds for a pulsing scheme in which a PRBS is superimposed on the periodic equalintensity ORELA bursts. Introduction of the PRBS modification permits neutrons of different energies originating from different bursts to reach the detector simultaneously, and the signal corresponding to a unique flight time to be extracted mathematically. Relative advantages and disadvantages of measurements from conventional and PRBS pulsing modes are discussed in terms of counting statistics and backgrounds. Computer models of TOF spectra are generated for both pulsing modes, using as examples a 20-meter 233 U fission-chamber measurement and a 155-meter 238 U sample-in transmission measurement. Detailed comparisons of PRBS vs conventional results are presented. This study indicates that although PRBS pulsing could enhance ORELA performance for selected measurements, for general ORELA operation the disadvantages from PRBS pulsing probably outweigh the advantages

  19. PuLSE: Quality control and quantification of peptide sequences explored by phage display libraries.

    Science.gov (United States)

    Shave, Steven; Mann, Stefan; Koszela, Joanna; Kerr, Alastair; Auer, Manfred

    2018-01-01

    The design of highly diverse phage display libraries is based on assumption that DNA bases are incorporated at similar rates within the randomized sequence. As library complexity increases and expected copy numbers of unique sequences decrease, the exploration of library space becomes sparser and the presence of truly random sequences becomes critical. We present the program PuLSE (Phage Library Sequence Evaluation) as a tool for assessing randomness and therefore diversity of phage display libraries. PuLSE runs on a collection of sequence reads in the fastq file format and generates tables profiling the library in terms of unique DNA sequence counts and positions, translated peptide sequences, and normalized 'expected' occurrences from base to residue codon frequencies. The output allows at-a-glance quantitative quality control of a phage library in terms of sequence coverage both at the DNA base and translated protein residue level, which has been missing from toolsets and literature. The open source program PuLSE is available in two formats, a C++ source code package for compilation and integration into existing bioinformatics pipelines and precompiled binaries for ease of use.

  20. Design of pulse transformers for PFL charging

    International Nuclear Information System (INIS)

    Rohwein, G.J.

    1979-01-01

    Air core pulse transformers powered by low voltage capacitor banks can be simple efficient systems for charging high-voltage (0.5 to 3 MV), pulse forming transmission lines (PFL) such as those used in electron and ion beam accelerators. In these applications pulse transformers must have the combined capability of high voltage endurance and high energy transfer efficiency, particularly in repetitive pulse systems where these features are of primary importance. The design of shielded, high-voltage, spiral, strip transformers which fulfill these requirements is described in this paper. Transformers of this type have been tested in three systems which operate with greater than 90% transfer efficiency and have not failed in over 10 7 shots

  1. Optimized, unequal pulse spacing in multiple echo sequences improves refocusing in magnetic resonance.

    Science.gov (United States)

    Jenista, Elizabeth R; Stokes, Ashley M; Branca, Rosa Tamara; Warren, Warren S

    2009-11-28

    A recent quantum computing paper (G. S. Uhrig, Phys. Rev. Lett. 98, 100504 (2007)) analytically derived optimal pulse spacings for a multiple spin echo sequence designed to remove decoherence in a two-level system coupled to a bath. The spacings in what has been called a "Uhrig dynamic decoupling (UDD) sequence" differ dramatically from the conventional, equal pulse spacing of a Carr-Purcell-Meiboom-Gill (CPMG) multiple spin echo sequence. The UDD sequence was derived for a model that is unrelated to magnetic resonance, but was recently shown theoretically to be more general. Here we show that the UDD sequence has theoretical advantages for magnetic resonance imaging of structured materials such as tissue, where diffusion in compartmentalized and microstructured environments leads to fluctuating fields on a range of different time scales. We also show experimentally, both in excised tissue and in a live mouse tumor model, that optimal UDD sequences produce different T(2)-weighted contrast than do CPMG sequences with the same number of pulses and total delay, with substantial enhancements in most regions. This permits improved characterization of low-frequency spectral density functions in a wide range of applications.

  2. The design of nuclear magnetic resonance programmable pulsed source based SOPC

    International Nuclear Information System (INIS)

    Zhang Qingshun; Zhang Yakun; Wang Wenli

    2012-01-01

    The design of pulse source in the equipment of pulsed Nuclear Magnetic Resonance is studied based on SOPC. The strong processing power of Nios Ⅱ embedded processor and the design flexibility of FPGA are fully used. The SOPC system is built. The overall design plan for the pulse source is described. The design of programmable multi-pulse generation logic user-defined components in the FPGA is introduced mainly. Part of the implementation program and the task logic simulation waveforms are presented. The pulse source has better application value because a clear, stable and good quality multi-pulse output waveform can be shown on the oscilloscope finally. The system software and hardware are easy to be modified and upgraded, meeting different application of pulsed NMR pulse sequence in variety of requirements. (authors)

  3. Design Study for Pulsed Proton Beam Generation

    Directory of Open Access Journals (Sweden)

    Han-Sung Kim

    2016-02-01

    Full Text Available Fast neutrons with a broad energy spectrum, with which it is possible to evaluate nuclear data for various research fields such as medical applications and the development of fusion reactors, can be generated by irradiating proton beams on target materials such as beryllium. To generate short-pulse proton beam, we adopted a deflector and slit system. In a simple deflector with slit system, most of the proton beam is blocked by the slit, especially when the beam pulse width is short. Therefore, the available beam current is very low, which results in low neutron flux. In this study, we proposed beam modulation using a buncher cavity to increase the available beam current. The ideal field pattern for the buncher cavity is sawtooth. To make the field pattern similar to a sawtooth waveform, a multiharmonic buncher was adopted. The design process for the multiharmonic buncher includes a beam dynamics calculation and three-dimensional electromagnetic simulation. In addition to the system design for pulsed proton generation, a test bench with a microwave ion source is under preparation to test the performance of the system. The design study results concerning the pulsed proton beam generation and the test bench preparation with some preliminary test results are presented in this paper.

  4. Quantum Logic with Composite Pulse Sequences on Sr^+

    Science.gov (United States)

    Shewmon, Ruth; Labaziewicz, Jaroslaw; Ge, Yufei; Wang, Shannon; Chuang, Isaac L.

    2008-03-01

    The optical 5S1/2->4D1/2 transition in Sr^+ is an attractive qubit because it can be addressed by diode lasers, which are relatively inexpensive and easy to operate. We characterize single-qubit rotations as well as a CNOT gate on a Sr^+ ion in a surface electrode Paul trap. To improve these operations, the frequency of the clock laser is stabilized to a high-finesse optical cavity. The resulting linewidth of the laser is approximately 300Hz. Composite pulse sequences, a technique adapted from NMR, have been shown to reduce the effects of systematic errors in a variety of quantum systems. We demonstrate several composite sequences that improve the fidelity of quantum logic operations on Sr^+.

  5. Study of the fast inversion recovery pulse sequence. With reference to fast fluid attenuated inversion recovery and fast short TI inversion recovery pulse sequence

    International Nuclear Information System (INIS)

    Tsuchihashi, Toshio; Maki, Toshio; Suzuki, Takeshi

    1997-01-01

    The fast inversion recovery (fast IR) pulse sequence was evaluated. We compared the fast fluid attenuated inversion recovery (fast FLAIR) pulse sequence in which inversion time (TI) was established as equal to the water null point for the purpose of the water-suppressed T 2 -weighted image, with the fast short TI inversion recovery (fast STIR) pulse sequence in which TI was established as equal to the fat null point for purpose of fat suppression. In the fast FLAIR pulse sequence, the water null point was increased by making TR longer. In the FLAIR pulse sequence, the longitudinal magnetization contrast is determined by TI. If TI is increased, T 2 -weighted contrast improves in the same way as increasing TR for the SE pulse sequence. Therefore, images should be taken with long TR and long TI, which are longer than TR and longer than the water null point. On the other hand, the fat null point is not affected by TR in the fast STIR pulse sequence. However, effective TE was affected by variation of the null point. This increased in proportion to the increase in effective TE. Our evaluation indicated that the fast STIR pulse sequence can control the extensive signals from fat in a short time. (author)

  6. Design of a ns-pulse generator with microwave studio

    NARCIS (Netherlands)

    Huiskamp, T.; Voeten, S.J.; Pemen, A.J.M.

    2012-01-01

    In this paper we present a design approach of a nanosecond pulse generator by using CST MICROWAVE STUDIO R . Through detailed simulation we arrive at a design for a fast rise-time variable pulse duration pulse generator which is able to produce 1–10 nanosecond pulses with tens of kilovolt amplitude.

  7. Design of Optical Pulse Position Modulation (PPM) Translating Receiver

    Energy Technology Data Exchange (ETDEWEB)

    Mendez, A J; Hernandez, V J; Gagliardi, R M; Bennett, C V

    2009-06-19

    M-ary pulse position modulation (M-ary PPM) signaling is a means of transmitting multiple bits per symbol in an intensity modulated/direct detection (IM/DD) system. PPM is used in applications with average power limitations. In optical communication systems, PPM becomes challenging to implement at gigabit rates and/or large M, since pulsed signaling requires higher electronic processing bandwidths than the fundamental transmission rate. they have thus been exploring techniques for PPM communications using optical processing. Previous work described a transmitter algorithm that directly translates a bit sequence of N digital bits to the optical pulse position m for any M = 2{sup N}. It has been considerably more difficult to define a similar receiver algorithm that translates the received optical pulse position directly back to a bit sequence with minimal electronic processing. Designs for specific Ms (e.g., 4-ary) have been shown and implemented, but are difficult to scale to larger M. In this work, they present for the first time a generalized PPM translating receiver that is applicable to all M and data rates.

  8. Design considerations for epithermal pulse reactors

    International Nuclear Information System (INIS)

    Ostensen, R.W.

    1978-01-01

    Simplified design criteria were developed for scoping analyses of epithermal pulse reactors for use in LMFBR safety testing. By using these criteria, materials and designs were investigated to determine performance limits of moderately sized reactor cores. Several designs are suggested for further study. These are a gas-cooled core fueled with a heterogeneous mixture of Fe-UO 2 cermet and BeO-UO 2 ceramic fuels, and a heavy-water-cooled core fueled with an Fe-UO 2 cermet

  9. Minimization of Dead-Periods in MRI Pulse Sequences for Imaging Oblique Planes

    Science.gov (United States)

    Atalar, Ergin; McVeigh, Elliot R.

    2007-01-01

    With the advent of breath-hold MR cardiac imaging techniques, the minimization of TR and TE for oblique planes has become a critical issue. The slew rates and maximum currents of gradient amplifiers limit the minimum possible TR and TE by adding dead-periods to the pulse sequences. We propose a method of designing gradient waveforms that will be applied to the amplifiers instead of the slice, readout, and phase encoding waveforms. Because this method ensures that the gradient amplifiers will always switch at their maximum slew rate, it results in the minimum possible dead-period for given imaging parameters and scan plane position. A GRASS pulse sequence has been designed and ultra-short TR and TE values have been obtained with standard gradient amplifiers and coils. For some oblique slices, we have achieved shorter TR and TE values than those for nonoblique slices. PMID:7869900

  10. MR imaging pulse sequence rationale: SD-, T1-, and T2-weighted images

    International Nuclear Information System (INIS)

    Sax, S.; Weathers, S.W.; Schneiders, N.J.; Horowitz, B.L.; Mawad, M.E.; Sandlin, M.E.; Blackwell, R.; Bryan, R.N.

    1986-01-01

    Over 500 patients have been examined with a pulse sequence designed to provide spin-density (SD)-weighted images (TR=3 sec, TE=35 msec), T1-weighted images (TR=0.3 sec, TE=35msec), and T2-weighted images (TR=3 sec, TE=105 msec) from which calculated ''synthesized'' images and SD, T1, and T2 calculated images could be obtained. Each image contributes unique information. SD-weighted images optimally display anatomy and often best highlight pathology. T1-weighted images are critical in assessing cerebral hemorrhages. T2-weighted images best display most lesions, but yield incomplete information in 35% of cases. All three types of ''weighted'' images are necessary to optimally display anatomy and fully characterize a lesion. Computerized calculations and simulations suggest that no other combination of pulse sequences yields equal information for a given examination time

  11. Investigation of the effect of finite pulse errors on the BABA pulse sequence using the Floquet-Magnus expansion approach

    Science.gov (United States)

    Mananga, Eugene S.; Reid, Alicia E.

    2013-01-01

    This paper presents a study of finite pulse widths for the BABA pulse sequence using the Floquet-Magnus expansion (FME) approach. In the FME scheme, the first order ? is identical to its counterparts in average Hamiltonian theory (AHT) and Floquet theory (FT). However, the timing part in the FME approach is introduced via the ? function not present in other schemes. This function provides an easy way for evaluating the spin evolution during the time in between' through the Magnus expansion of the operator connected to the timing part of the evolution. The evaluation of ? is particularly useful for the analysis of the non-stroboscopic evolution. Here, the importance of the boundary conditions, which provide a natural choice of ? , is ignored. This work uses the ? function to compare the efficiency of the BABA pulse sequence with ? and the BABA pulse sequence with finite pulses. Calculations of ? and ? are presented.

  12. A new RF tagging pulse based on the Frank poly-phase perfect sequence

    DEFF Research Database (Denmark)

    Laustsen, Christoffer; Greferath, Marcus; Ringgaard, Steffen

    2014-01-01

    Radio frequency (RF) spectrally selective multiband pulses or tagging pulses, are applicable in a broad range of magnetic resonance methods. We demonstrate through simulations and experiments a new phase-modulation-only RF pulse for RF tagging based on the Frank poly-phase perfect sequence...

  13. A dispersion-balanced Discrete Fourier Transform of repetitive pulse sequences using temporal Talbot effect

    Science.gov (United States)

    Fernández-Pousa, Carlos R.

    2017-11-01

    We propose a processor based on the concatenation of two fractional temporal Talbot dispersive lines with balanced dispersion to perform the DFT of a repetitive electrical sequence, for its use as a controlled source of optical pulse sequences. The electrical sequence is used to impart the amplitude and phase of a coherent train of optical pulses by use of a modulator placed between the two Talbot lines. The proposal has been built on a representation of the action of fractional Talbot effect on repetitive pulse sequences and a comparison with related results and proposals. It is shown that the proposed system is reconfigurable within a few repetition periods, has the same processing rate as the input optical pulse train, and requires the same technical complexity in terms of dispersion and pulse width as the standard, passive pulse-repetition rate multipliers based on fractional Talbot effect.

  14. MR pulse sequences for selective relaxation time measurements: a phantom study

    DEFF Research Database (Denmark)

    Thomsen, C; Jensen, K E; Jensen, M

    1990-01-01

    a Siemens Magnetom wholebody magnetic resonance scanner operating at 1.5 Tesla was used. For comparison six imaging pulse sequences for relaxation time measurements were tested on the same phantom. The spectroscopic pulse sequences all had an accuracy better than 10% of the reference values....

  15. EGNAS: an exhaustive DNA sequence design algorithm

    Directory of Open Access Journals (Sweden)

    Kick Alfred

    2012-06-01

    Full Text Available Abstract Background The molecular recognition based on the complementary base pairing of deoxyribonucleic acid (DNA is the fundamental principle in the fields of genetics, DNA nanotechnology and DNA computing. We present an exhaustive DNA sequence design algorithm that allows to generate sets containing a maximum number of sequences with defined properties. EGNAS (Exhaustive Generation of Nucleic Acid Sequences offers the possibility of controlling both interstrand and intrastrand properties. The guanine-cytosine content can be adjusted. Sequences can be forced to start and end with guanine or cytosine. This option reduces the risk of “fraying” of DNA strands. It is possible to limit cross hybridizations of a defined length, and to adjust the uniqueness of sequences. Self-complementarity and hairpin structures of certain length can be avoided. Sequences and subsequences can optionally be forbidden. Furthermore, sequences can be designed to have minimum interactions with predefined strands and neighboring sequences. Results The algorithm is realized in a C++ program. TAG sequences can be generated and combined with primers for single-base extension reactions, which were described for multiplexed genotyping of single nucleotide polymorphisms. Thereby, possible foldback through intrastrand interaction of TAG-primer pairs can be limited. The design of sequences for specific attachment of molecular constructs to DNA origami is presented. Conclusions We developed a new software tool called EGNAS for the design of unique nucleic acid sequences. The presented exhaustive algorithm allows to generate greater sets of sequences than with previous software and equal constraints. EGNAS is freely available for noncommercial use at http://www.chm.tu-dresden.de/pc6/EGNAS.

  16. Design of auto-control high-voltage control system of pulsed neutron generator

    International Nuclear Information System (INIS)

    Lv Juntao

    2008-01-01

    It is difficult to produce multiple anode controlling time sequences under different logging mode for the high-voltage control system of the conventional pulsed neutron generator. It is also difficult realize sequential control among anode high-voltage, filament power supply and target voltage to make neutron yield stable. To these problems, an auto-control high-voltage system of neutron pulsed generator was designed. It not only can achieve anode high-voltage double blast time sequences, which can measure multiple neutron blast time sequences such as Σ, activated spectrum, etc. under inelastic scattering mode, but also can realize neutron generator real-time measurement of multi-state parameters and auto-control such as target voltage pulse width modulation (PWM), filament current, anode current, etc., there by it can produce stable neutron yield and realize stable and accurate measurement of the pulsed neutron full spectral loging tool. (authors)

  17. Investigation of the Effect of Finite Pulse Errors on BABA Pulse Sequence Using Floquet-Magnus Expansion Approach.

    Science.gov (United States)

    Mananga, Eugene S; Reid, Alicia E

    This paper presents the study of finite pulse widths for the BABA pulse sequence using the Floquet-Magnus expansion (FME) approach. In the FME scheme, the first order F 1 is identical to its counterparts in average Hamiltonian theory (AHT) and Floquet theory (FT). However, the timing part in the FME approach is introduced via the Λ 1 ( t ) function not present in other schemes. This function provides an easy way for evaluating the spin evolution during "the time in between" through the Magnus expansion of the operator connected to the timing part of the evolution. The evaluation of Λ 1 ( t ) is useful especially for the analysis of the non-stroboscopic evolution. Here, the importance of the boundary conditions, which provides a natural choice of Λ 1 (0) is ignored. This work uses the Λ 1 ( t ) function to compare the efficiency of the BABA pulse sequence with δ - pulses and the BABA pulse sequence with finite pulses. Calculations of Λ 1 ( t ) and F 1 are presented.

  18. Chirped pulse digital holography for measuring the sequence of ultrafast optical wavefronts

    Science.gov (United States)

    Karasawa, Naoki

    2018-04-01

    Optical setups for measuring the sequence of ultrafast optical wavefronts using a chirped pulse as a reference wave in digital holography are proposed and analyzed. In this method, multiple ultrafast object pulses are used to probe the temporal evolution of ultrafast phenomena and they are interfered with a chirped reference wave to record a digital hologram. Wavefronts at different times can be reconstructed separately from the recorded hologram when the reference pulse can be treated as a quasi-monochromatic wave during the pulse width of each object pulse. The feasibility of this method is demonstrated by numerical simulation.

  19. Pulse Detecting Genetic Circuit – A New Design Approach

    Science.gov (United States)

    Inniss, Mara; Iba, Hitoshi; Way, Jeffrey C.

    2016-01-01

    A robust cellular counter could enable synthetic biologists to design complex circuits with diverse behaviors. The existing synthetic-biological counters, responsive to the beginning of the pulse, are sensitive to the pulse duration. Here we present a pulse detecting circuit that responds only at the falling edge of a pulse–analogous to negative edge triggered electric circuits. As biological events do not follow precise timing, use of such a pulse detector would enable the design of robust asynchronous counters which can count the completion of events. This transcription-based pulse detecting circuit depends on the interaction of two co-expressed lambdoid phage-derived proteins: the first is unstable and inhibits the regulatory activity of the second, stable protein. At the end of the pulse the unstable inhibitor protein disappears from the cell and the second protein triggers the recording of the event completion. Using stochastic simulation we showed that the proposed design can detect the completion of the pulse irrespective to the pulse duration. In our simulation we also showed that fusing the pulse detector with a phage lambda memory element we can construct a counter which can be extended to count larger numbers. The proposed design principle is a new control mechanism for synthetic biology which can be integrated in different circuits for identifying the completion of an event. PMID:27907045

  20. High voltage pulsed cable design: a practical example

    Energy Technology Data Exchange (ETDEWEB)

    Kewish, R.W. Jr.; Boicourt, G.P.

    1979-01-01

    The design of optimum high voltage pulse cable is difficult because very little emperical data are available on performance in pulsed applications. This paper follows the design and testing of one high voltage pulse cable, 40/100 trigger cable. The design was based on an unproven theory and the impressive outcome lends support to the theory. The theory is outlined and it is shown that there exists an inductance which gives a cable of minimum size for a given maximum stress. Test results on cable manufactured according to the design are presented and compared with the test results on the cable that 40/100 replaces.

  1. Design and research of fuel element for pulsed reactor

    International Nuclear Information System (INIS)

    Tian Sheng

    1994-05-01

    The fuel element is the key component for pulsed reactor and its design is one of kernel techniques for pulsed reactor. Following the GA Company of US the NPIC (Nuclear Power Institute of China) has mastered this technique. Up to now, the first pulsed reactor in China (PRC-1) has been safely operated for about 3 years. The design and research of fuel element undertaken by NPIC is summarized. The verification and evaluation of this design has been carried out by using the results of measured parameters during operation and test of PRC-1 as well as comparing the design parameters published by others

  2. High voltage pulsed cable design: a practical example

    International Nuclear Information System (INIS)

    Kewish, R.W. Jr.; Boicourt, G.P.

    1979-01-01

    The design of optimum high voltage pulse cable is difficult because very little emperical data are available on performance in pulsed applications. This paper follows the design and testing of one high voltage pulse cable, 40/100 trigger cable. The design was based on an unproven theory and the impressive outcome lends support to the theory. The theory is outlined and it is shown that there exists an inductance which gives a cable of minimum size for a given maximum stress. Test results on cable manufactured according to the design are presented and compared with the test results on the cable that 40/100 replaces

  3. Proceedings of Pulsed Magnet Design and Measurement Workshop

    Energy Technology Data Exchange (ETDEWEB)

    Shaftan, T.; Heese, R.; Ozaki,S.

    2010-01-19

    The goals of the Workshop are to assess the design of pulsed system at the NSLS-II and establish mitigation strategies for critical issues during development. The focus of the Workshop is on resolving questions related to the set-up of the pulsed magnet laboratory, on measuring the pulsed magnet's current waveforms and fields, and on achieving tight tolerances on the magnet's alignment and field quality.

  4. Study of {sup 14}N NQR response to SORC pulse sequence

    Energy Technology Data Exchange (ETDEWEB)

    Konnai, A., E-mail: konnai@nmri.go.jp; Odano, N. [National Maritime Research Institute, Department of Navigation and System Engineering (Japan); Asaji, T. [Nihon University, Department of Chemistry, College of Humanities and Sciences (Japan)

    2008-01-15

    The behavior of nuclear quadrupole resonance (NQR) signals between RF pulses of the strong off-resonance comb (SORC) as well as the spin-locking spin-echo (SLSE) pulse sequences was studied as for {sup 14}N NQR line {nu}{sub +} of dimethylnitramine (CH{sub 3}){sub 2}NNO{sub 2} at 77 K. The periodic variation of the signal amplitude observed by using SORC pulse sequence could be reasonably explained by the theoretical expression reported in the literature.

  5. Comparison of ompP5 sequence-based typing and pulsed-filed gel ...

    African Journals Online (AJOL)

    In this study, comparison of the outer membrane protein P5 gene (ompP5) sequence-based typing with pulsed-field gel electrophoresis (PFGE) for the genotyping of Haemophilus parasuis, the 15 serovar reference strains and 43 isolates were investigated. When comparing the two methods, 31 ompP5 sequence types ...

  6. Pulseq-Graphical Programming Interface: Open source visual environment for prototyping pulse sequences and integrated magnetic resonance imaging algorithm development.

    Science.gov (United States)

    Ravi, Keerthi Sravan; Potdar, Sneha; Poojar, Pavan; Reddy, Ashok Kumar; Kroboth, Stefan; Nielsen, Jon-Fredrik; Zaitsev, Maxim; Venkatesan, Ramesh; Geethanath, Sairam

    2018-03-11

    To provide a single open-source platform for comprehensive MR algorithm development inclusive of simulations, pulse sequence design and deployment, reconstruction, and image analysis. We integrated the "Pulseq" platform for vendor-independent pulse programming with Graphical Programming Interface (GPI), a scientific development environment based on Python. Our integrated platform, Pulseq-GPI, permits sequences to be defined visually and exported to the Pulseq file format for execution on an MR scanner. For comparison, Pulseq files using either MATLAB only ("MATLAB-Pulseq") or Python only ("Python-Pulseq") were generated. We demonstrated three fundamental sequences on a 1.5 T scanner. Execution times of the three variants of implementation were compared on two operating systems. In vitro phantom images indicate equivalence with the vendor supplied implementations and MATLAB-Pulseq. The examples demonstrated in this work illustrate the unifying capability of Pulseq-GPI. The execution times of all the three implementations were fast (a few seconds). The software is capable of user-interface based development and/or command line programming. The tool demonstrated here, Pulseq-GPI, integrates the open-source simulation, reconstruction and analysis capabilities of GPI Lab with the pulse sequence design and deployment features of Pulseq. Current and future work includes providing an ISMRMRD interface and incorporating Specific Absorption Ratio and Peripheral Nerve Stimulation computations. Copyright © 2018 Elsevier Inc. All rights reserved.

  7. High dimensional and high resolution pulse sequences for backbone resonance assignment of intrinsically disordered proteins

    Energy Technology Data Exchange (ETDEWEB)

    Zawadzka-Kazimierczuk, Anna; Kozminski, Wiktor, E-mail: kozmin@chem.uw.edu.pl [University of Warsaw, Faculty of Chemistry (Poland); Sanderova, Hana; Krasny, Libor [Institute of Microbiology, Academy of Sciences of the Czech Republic, Laboratory of Molecular Genetics of Bacteria, Department of Bacteriology (Czech Republic)

    2012-04-15

    Four novel 5D (HACA(N)CONH, HNCOCACB, (HACA)CON(CA)CONH, (H)NCO(NCA)CONH), and one 6D ((H)NCO(N)CACONH) NMR pulse sequences are proposed. The new experiments employ non-uniform sampling that enables achieving high resolution in indirectly detected dimensions. The experiments facilitate resonance assignment of intrinsically disordered proteins. The novel pulse sequences were successfully tested using {delta} subunit (20 kDa) of Bacillus subtilis RNA polymerase that has an 81-amino acid disordered part containing various repetitive sequences.

  8. SNAD: sequence name annotation-based designer

    Directory of Open Access Journals (Sweden)

    Gorbalenya Alexander E

    2009-08-01

    Full Text Available Abstract Background A growing diversity of biological data is tagged with unique identifiers (UIDs associated with polynucleotides and proteins to ensure efficient computer-mediated data storage, maintenance, and processing. These identifiers, which are not informative for most people, are often substituted by biologically meaningful names in various presentations to facilitate utilization and dissemination of sequence-based knowledge. This substitution is commonly done manually that may be a tedious exercise prone to mistakes and omissions. Results Here we introduce SNAD (Sequence Name Annotation-based Designer that mediates automatic conversion of sequence UIDs (associated with multiple alignment or phylogenetic tree, or supplied as plain text list into biologically meaningful names and acronyms. This conversion is directed by precompiled or user-defined templates that exploit wealth of annotation available in cognate entries of external databases. Using examples, we demonstrate how this tool can be used to generate names for practical purposes, particularly in virology. Conclusion A tool for controllable annotation-based conversion of sequence UIDs into biologically meaningful names and acronyms has been developed and placed into service, fostering links between quality of sequence annotation, and efficiency of communication and knowledge dissemination among researchers.

  9. Design of a repetitively pulsed megajoule dense-plasma focus

    International Nuclear Information System (INIS)

    Zucker, O.; Bostick, W.; Gullickson, R.; Long, J.; Luce, J.; Sahlin, H.

    1975-01-01

    This report describes a 1 pulse per second, dense-plasma-focus (DPF) materials-testing device capable of delivering a minimum of 10 15 neutrons per pulse. Moderate scaling up from existing designs is shown to be sufficient to provide 2 x 10 13 neutrons/ cm 2 . s to a suitable target. The average power consumption, which has become a major issue due to the energy crisis, is analyzed with respect to other plasma devices and is shown to be highly favorable. Also discussed is a novel approach to capacitor-bank and switch design with respect to repetitive-pulse operation. (auth)

  10. Arbitrary digital pulse sequence generator with delay-loop timing

    Science.gov (United States)

    Hošák, Radim; Ježek, Miroslav

    2018-04-01

    We propose an idea of an electronic multi-channel arbitrary digital sequence generator with temporal granularity equal to two clock cycles. We implement the generator with 32 channels using a low-cost ARM microcontroller and demonstrate its capability to produce temporal delays ranging from tens of nanoseconds to hundreds of seconds, with 24 ns timing granularity and linear scaling of delay with respect to the number of delay loop iterations. The generator is optionally synchronized with an external clock source to provide 100 ps jitter and overall sequence repeatability within the whole temporal range. The generator is fully programmable and able to produce digital sequences of high complexity. The concept of the generator can be implemented using different microcontrollers and applied for controlling of various optical, atomic, and nuclear physics measurement setups.

  11. Wavelet Domain Radiofrequency Pulse Design Applied to Magnetic Resonance Imaging.

    Directory of Open Access Journals (Sweden)

    Andrew M Huettner

    Full Text Available A new method for designing radiofrequency (RF pulses with numerical optimization in the wavelet domain is presented. Numerical optimization may yield solutions that might otherwise have not been discovered with analytic techniques alone. Further, processing in the wavelet domain reduces the number of unknowns through compression properties inherent in wavelet transforms, providing a more tractable optimization problem. This algorithm is demonstrated with simultaneous multi-slice (SMS spin echo refocusing pulses because reduced peak RF power is necessary for SMS diffusion imaging with high acceleration factors. An iterative, nonlinear, constrained numerical minimization algorithm was developed to generate an optimized RF pulse waveform. Wavelet domain coefficients were modulated while iteratively running a Bloch equation simulator to generate the intermediate slice profile of the net magnetization. The algorithm minimizes the L2-norm of the slice profile with additional terms to penalize rejection band ripple and maximize the net transverse magnetization across each slice. Simulations and human brain imaging were used to demonstrate a new RF pulse design that yields an optimized slice profile and reduced peak energy deposition when applied to a multiband single-shot echo planar diffusion acquisition. This method may be used to optimize factors such as magnitude and phase spectral profiles and peak RF pulse power for multiband simultaneous multi-slice (SMS acquisitions. Wavelet-based RF pulse optimization provides a useful design method to achieve a pulse waveform with beneficial amplitude reduction while preserving appropriate magnetization response for magnetic resonance imaging.

  12. Hypercapnic normalization of BOLD fMRI: comparison across field strengths and pulse sequences

    DEFF Research Database (Denmark)

    Cohen, Eric R.; Rostrup, Egill; Sidaros, Karam

    2004-01-01

    to be more accurately localized and quantified based on changes in venous blood oxygenation alone. The normalized BOLD signal induced by the motor task was consistent across different magnetic fields and pulse sequences, and corresponded well with cerebral blood flow measurements. Our data suggest...... size, as well as experimental, such as pulse sequence and static magnetic field strength (B(0)). Thus, it is difficult to compare task-induced fMRI signals across subjects, field strengths, and pulse sequences. This problem can be overcome by normalizing the neural activity-induced BOLD fMRI response...... for global stimulation, subjects breathed a 5% CO(2) gas mixture. Under all conditions, voxels containing primarily large veins and those containing primarily active tissue (i.e., capillaries and small veins) showed distinguishable behavior after hypercapnic normalization. This allowed functional activity...

  13. Designing a prototype of the ITER pulse scheduling system

    International Nuclear Information System (INIS)

    Yamamoto, T.; Yonekawa, I.; Ohta, K.; Hosoyama, H.; Hashimoto, Y.; Wallander, A.; Winter, A.; Sugie, T.; Kusama, Y.; Kawano, Y.; Yoshino, R.

    2012-01-01

    Highlights: ► We designed a prototype of the ITER pulse scheduling system. ► Structure of ITER pulse schedules was designed. ► Validation and automatic value assignment functions were adopted. ► A prototype will be implemented in 2011. - Abstract: A prototype of the ITER pulse scheduling system that prepares and manages parameters for ITER plasma operations has been designed. Based on the analyzed requirements on the system, structure of the parameters and necessary functions were determined. Segment and module structures were tuned to the ITER requirements. Three types of validations assure sanity of the parameters. The design limits check and the operation window check verify whether the values of the parameters do not exceed the limits. The consistency check calculates dependency among parameters in accordance with logics described in a scripting language. The ITER pulse scheduling system provides interface with a physics model and simulator. Some abstract physics parameters are converted to engineering parameters with the physics simulation. The results of simulation such as plasma characteristics of specified parameters are also shown to the researchers. The tool to specify the parameters is data-driven. Therefore, it is flexible for changes of number of the parameters. A prototype is being implemented in 2011. Using the prototype, this design will be verified and refined. The evaluation of the prototype will be a basis of the final production of the ITER pulse scheduling system.

  14. Optimal pulse sequence for ferumoxides-enhanced MR imaging used in the detection of hepatocellular carcinoma: a comparative study using seven pulse sequences

    International Nuclear Information System (INIS)

    Kim, Seung Hoon; Choi, Dongil; Lim, Jae Hoon; Lee, Won Jae; Jang, Hyun Jung; Lim, Kyo Keun; Lee, Soon Jin; Cho, Jae Min; Kim, Seung Kwon; Kim, Gab Chul

    2002-01-01

    To identify the optimal pulse sequence for ferumoxides-enhanced magnetic resonance (MR) imaging in the detection of hepatocelluar carcinomas (HCCs). Sixteen patients with 25 HCCs underwent MR imaging following intravenous infusion of ferumoxides. All MR studies were performed on a 1.5-T MR system, using a phased-array coil. Ferumoxides (Feridex IV) at a dose of 15 μmol/Kg was slowly infused intravenously, and axial images of seven sequences were obtained 30 minutes after the end of infusion. The MR protocol included fast spin-echo (FSE) with two echo times (TR3333-8571/TE18 and 90-117), singleshot FSE (SSFSE) with two echo times (TR∞/TE39 and 98), T2-weighted gradient-recalled acquisition in the steady state (GRASS) (TR216/TE20), T2-weighted fast multiplanar GRASS (FMPGR) (TR130/TE8.4-9.5), and T2-weighted fast multiplanar spoiled GRASS (FMPSPGR) (TR130/TE8.4-9.5). Contrast-to-noise ratios (CNRs) of HCCs determined during the imaging sequences formed the basis of quantitative analysis, and images were qualitatively assessed in terms of lesion conspicuity and image artifacts. The diagnostic accuracy of all sequences was assessed using receiver operating characteristic (ROC) analysis. Quantitative analysis revealed that the CNRs of T2-weighted FMPGR and T2-weighted FMPSPGR were significantly higher than those of the other sequences, while qualitative analysis showed that image artifacts were prominent at T2-weighted GRASS imaging. Lesion conspicuity was statistically significantly less clear at SSFSE imaging. In term of lesion detection, T-weighted FMPGR, T2- weighted FMPSPGR, and proton density FSE imaging were statistically superior to the others. T2-weighted FMPGR, T2- weighted FMPSPGR, and proton density FSE appear to be the optimal pulse sequences for ferumoxidesenhanced MR imaging in the detection of HCCs

  15. Pulse Design in Solid-State Nuclear Magnetic Resonance

    DEFF Research Database (Denmark)

    Palani, Ravi Shankar

    , where the former is the most widely used approach in NMR. AHT and Floquet theory, which use mathematical tools namely, Magnus expansion and Van Vleck transformations respectively, yield the same effective Hamiltonian that is valid for stroboscopic observation. The equivalence between the theories has...... coupling) interactions are referred to as dipolar recoupling pulse sequences and forms the subject of this dissertation. NMR experiments, that involve repeating (periodic) pulse sequences, are generally understood by finding an average or effective Hamiltonian (interaction, in the language of physics...... been discussed in the past in literature. Generalised expressions for the effective Hamiltonian using AHT are derived in the frequency domain in this dissertation, to allow for appreciation of the equivalence with Floquet theory mediated effective Hamiltonian. The derivation relies on the ability...

  16. Design of electron detection system for pulse electron irradiator

    International Nuclear Information System (INIS)

    Anjar Anggraini H; Agus Purwadi; Lely Susita RM; Bambang Siswanto; Agus Wijayanto

    2016-01-01

    Design of electron detection system for pulse electron irradiator has been conducted on the Plasma Cathode Electron Source by Rogowski coil technique. Rogowski coil has ability to capture the induced magnetic field of the electric current, subsequent induced magnetic field will provide voltage after passing integrator. This diagnostic used combination of copper wire, ferrite and RC integrator. The design depends on the pulse width and the value of plasma current that passes through the coil, thus the number of windings, coil area and integrator can be designed. For plasma spots current of IDPS expected to be 10 A and pulse width 10 μs the Rogowski coil using MnZn ferrite with inductance L = 0.275 mH and permeability μr = 200 H/m. For the current of plasma arc ADPS expected to be 100 A and pulse width 100 μs by using inductance L=1.9634 mH and permeability μr = 6256 H/m. Electron current in extraction system expected to be 30 A and pulse width 100 μs the Rogowski coil using inductance L=51.749 mH and permeability μr= 4987 H/m. Design integrator used is the type of RC integrator. (author)

  17. Design and construction of a precision pulse generator

    International Nuclear Information System (INIS)

    Robles G, J.C.

    1977-06-01

    The design and consruction of a pulse generator is considered to simulate in due form and magnitude the pulses obtained in semiconductor detectors of nuclear radiation in a frequency interval to allow its use in testing and calibration of spectrometric systems. A parameters analysis which define the pulse form through the various types of semiconductor detectors was realized with the object to obtain the most important characteristics of the pulse transmitted by the generator. These are the characteristics: Variable frequency from 0.0124 to 120 Hz, variable amplitude from 0 to 1 V, Integral lineality +- 0.25%, amplitude stability -0.031%/degC exponential going up time and variable according to steps of 6.5, 25, 60, 130 and 275 nsec., decay time constant 200 or 400μsec. with output ending at 100Ω. According to the results, the stability is less than the established in the design. In order to improve it, an analysis was made in function with the temperature of the components which integrate the circuit that produces the pulse. This analysis allow us to define the specifications related to the components which integrate the circuit that produces the pulse. This analysis allow us to define the specifications related to the components. Finally a compilation was made of the most common applications of the generator in nuclear instrumentation. (author)

  18. A high pulsed power supply system designed for pulsed high magnetic field

    International Nuclear Information System (INIS)

    Liu Kefu; Wang Shaorong; Zhong Heqing; Xu Yan; Pan Yuan

    2008-01-01

    This paper introduces the design of high pulsed power supply system for producing pulsed high magnetic field up to 70 T. This system consists of 58 sets of 55 μF of capacitor bank which provides 1.0 MJ energy storage. A set of vacuum closing switch is chosen as main switch for energy discharge into magnetic coil. A crowbar circuit with high power diodes in series with resistor is used to absorb the redundant energy and adjust pulse width. The resistance of magnetic coil changing with current is deduced by energy balance equations. A capacitor-charging power supply using a series-resonant, constant on-time variable frequency control, and zero-current switching charges the capacitor bank in one minute time with high efficiency. The pulsed power supply provides adjustable current and pulse width with 30 kA peak and 30 ms maximum. The primary experiments demonstrate the system reliability. This work provides an engineering guidance for future development of pulsed high magnetic field. (authors)

  19. Correction of echo shift in reconstruction processing for ultra-short TE pulse sequence

    International Nuclear Information System (INIS)

    Takizawa, Masahiro; Ootsuka, Takehiro; Abe, Takayuki; Takahashi, Tetsuhiko

    2010-01-01

    An ultra-short echo time (TE) pulse sequence is composed of a radial sampling that acquires echo signals radially in the K-space and a half-echo acquisition that acquires only half of the echo signal. The shift in the position of the echo signal (echo shift) caused by the timing errors in the gradient magnetic field pulses affects the image quality in the radial sampling with the half-echo acquisition. To improve image quality, we have developed a signal correction algorithm that detects and eliminates this echo shift during reconstruction by performing a pre-scan within 10 seconds. The results showed that image quality is improved under oblique and/or off-centering conditions that frequently cause image distortion due to hardware error. In conclusion, we have developed a robust ultra-short TE pulse sequence that allows wide latitude in the scan parameters, including oblique and off-centering conditions. (author)

  20. Design of a PFN for the NLC klystron pulse modulator

    International Nuclear Information System (INIS)

    Akemoto, M.; Gold, S.; Krasnykh, A.; Koontz, R.

    1998-06-01

    A pulse-forming network(PFN) with mutual coupling has been designed and built for the klystron pulse moderator of the SLAC Next Linear Collider (NLC). The PFN consists of a single-layer air-core coil with mutual coupling between sections and equal valued capacitos. The optimization of the coupling coefficient and the design of the air-core coil such as its radius, the number of turns and its total length are discussed. The results of the high and low voltage tests are also presented

  1. Design of a PFN for the NLC klystron pulse modulator

    Energy Technology Data Exchange (ETDEWEB)

    Akemoto, M. [High Energy Accelerator Research Organization, Tsukuba, Ibaraki (Japan); Gold, S.; Krasnykh, A.; Koontz, R.

    1998-11-01

    A pulse-forming network (PFN) with mutual coupling has been designed and built for the klystron pulse modulator of the SLAC Next Linear Collider (NLC). The PFN consists of a single-layer air-core coil with mutual coupling between sections and equal valued capacitors. The optimization of the coupling coefficient and the design of the air-core coil such as its radius, the number of turns and its total length are discussed. The results of the high and low voltage tests are also presented. (author)

  2. Pulse design for multilevel systems by utilizing Lie transforms

    Science.gov (United States)

    Kang, Yi-Hao; Chen, Ye-Hong; Shi, Zhi-Cheng; Huang, Bi-Hua; Song, Jie; Xia, Yan

    2018-03-01

    We put forward a scheme to design pulses to manipulate multilevel systems with Lie transforms. A formula to reverse construct a control Hamiltonian is given and is applied in pulse design in the three- and four-level systems as examples. To demonstrate the validity of the scheme, we perform numerical simulations, which show the population transfers for cascaded three-level and N -type four-level Rydberg atoms can be completed successfully with high fidelities. Therefore, the scheme may benefit quantum information tasks based on multilevel systems.

  3. A design approach for systems based on magnetic pulse compression

    International Nuclear Information System (INIS)

    Praveen Kumar, D. Durga; Mitra, S.; Senthil, K.; Sharma, D. K.; Rajan, Rehim N.; Sharma, Archana; Nagesh, K. V.; Chakravarthy, D. P.

    2008-01-01

    A design approach giving the optimum number of stages in a magnetic pulse compression circuit and gain per stage is given. The limitation on the maximum gain per stage is discussed. The total system volume minimization is done by considering the energy storage capacitor volume and magnetic core volume at each stage. At the end of this paper, the design of a magnetic pulse compression based linear induction accelerator of 200 kV, 5 kA, and 100 ns with a repetition rate of 100 Hz is discussed with its experimental results

  4. Magnet design approach for pulsed tokamak reactors

    International Nuclear Information System (INIS)

    Kim, S.H.; Evans, K. Jr.; Ehst, D.A.

    1983-12-01

    A choice of various operating modes of a tokamak reactor will have considerable impact on the fatigue lives and cost of ohmic heating (OH), equilibrium field (EF), and toroidal field (TF) coils. OH AND EF coil requirements and their costs, as well as the effects of the fringing fields of the EF coils on the TF coils, have been studied under cyclic operation in the range of N = 10 2 to 10 6 cycles, spanning the range from a noninductively driven reactor (STARFIRE) to a conventional ohmically driven reactor. For a reference design of TF coils the design of the central OH solenoid has been studied as a function of its maximum field, B/sup OH/. Increasing requirements for structural support lead to only negligible increases in volt-seconds for B/sup OH/ greater than or equal to 10.0 T. Fatigue failure of the OH coil is not a concern for N less than or equal to 10 5 ; for N approx. 10 6 fatigue limits the strain to small values, resulting in small increases in structural requirements and modest decreases in volt-seconds. Should noninductive current drive be achievable we note that this not only eliminates the OH coil, but it also permits EF coil placement in the inboard region, which facilitates the creation of highly shaped plasma cross sections (large triangularity, or bean-shaped equilibria). We have computed the stored energy, coil configuration and fringing fields for a number of EF coil design options

  5. Pulsed neutron source cold moderators --- concepts, design and engineering

    International Nuclear Information System (INIS)

    Bauer, Guenter S.

    1997-01-01

    Moderator design for pulsed neutron sources is becoming more and more an interface area between source designers and instrument designers. Although there exists a high degree of flexibility, there are also physical and technical limitations. This paper aims at pointing out these limitations and examining ways to extend the current state of moderator technology in order to make the next generation neutron sources even more versatile and flexible tools for science in accordance with the users' requirements. (auth)

  6. 5 MW pulsed spallation neutron source, Preconceptual design study

    Energy Technology Data Exchange (ETDEWEB)

    1994-06-01

    This report describes a self-consistent base line design for a 5 MW Pulsed Spallation Neutron Source (PSNS). It is intended to establish feasibility of design and as a basis for further expanded and detailed studies. It may also serve as a basis for establishing project cost (30% accuracy) in order to intercompare competing designs for a PSNS not only on the basis of technical feasibility and technical merit but also on the basis of projected total cost. The accelerator design considered here is based on the objective of a pulsed neutron source obtained by means of a pulsed proton beam with average beam power of 5 MW, in {approx} 1 {mu}sec pulses, operating at a repetition rate of 60 Hz. Two target stations are incorporated in the basic facility: one for operation at 10 Hz for long-wavelength instruments, and one operating at 50 Hz for instruments utilizing thermal neutrons. The design approach for the proton accelerator is to use a low energy linear accelerator (at 0.6 GeV), operating at 60 Hz, in tandem with two fast cycling booster synchrotrons (at 3.6 GeV), operating at 30 Hz. It is assumed here that considerations of cost and overall system reliability may favor the present design approach over the alternative approach pursued elsewhere, whereby use is made of a high energy linear accelerator in conjunction with a dc accumulation ring. With the knowledge that this alternative design is under active development, it was deliberately decided to favor here the low energy linac-fast cycling booster approach. Clearly, the present design, as developed here, must be carried to the full conceptual design stage in order to facilitate a meaningful technology and cost comparison with alternative designs.

  7. 5 MW pulsed spallation neutron source, Preconceptual design study

    International Nuclear Information System (INIS)

    1994-06-01

    This report describes a self-consistent base line design for a 5 MW Pulsed Spallation Neutron Source (PSNS). It is intended to establish feasibility of design and as a basis for further expanded and detailed studies. It may also serve as a basis for establishing project cost (30% accuracy) in order to intercompare competing designs for a PSNS not only on the basis of technical feasibility and technical merit but also on the basis of projected total cost. The accelerator design considered here is based on the objective of a pulsed neutron source obtained by means of a pulsed proton beam with average beam power of 5 MW, in ∼ 1 μsec pulses, operating at a repetition rate of 60 Hz. Two target stations are incorporated in the basic facility: one for operation at 10 Hz for long-wavelength instruments, and one operating at 50 Hz for instruments utilizing thermal neutrons. The design approach for the proton accelerator is to use a low energy linear accelerator (at 0.6 GeV), operating at 60 Hz, in tandem with two fast cycling booster synchrotrons (at 3.6 GeV), operating at 30 Hz. It is assumed here that considerations of cost and overall system reliability may favor the present design approach over the alternative approach pursued elsewhere, whereby use is made of a high energy linear accelerator in conjunction with a dc accumulation ring. With the knowledge that this alternative design is under active development, it was deliberately decided to favor here the low energy linac-fast cycling booster approach. Clearly, the present design, as developed here, must be carried to the full conceptual design stage in order to facilitate a meaningful technology and cost comparison with alternative designs

  8. Optimum transformer design for a pulsed power system

    International Nuclear Information System (INIS)

    Broverman, A.Y.

    1987-11-01

    Electromagnetic forces resulting from peak pulsed current require special design consideration to prevent failure of the coils of the transformer. Procedures for interleaving transformer windings to reduce both electromagnetic short-circuit forces and reactive voltage drop while reducing procurement costs are described. The basics of transformer design principles and cost trade-offs are included to enhance understanding of the interleaving procedures. 3 refs., 3 figs

  9. Design of Electric Field Sensors for Measurement of Electromagnetic Pulse

    Directory of Open Access Journals (Sweden)

    Hui ZHANG

    2014-01-01

    Full Text Available In this paper, a D-dot electric field sensor and a fiber-optic transmission electric field sensor are developed for measurement of electromagnetic pulse. The D-dot sensor is a differential model sensor without source and has a simple structure. The fiber-optic transmission sensor is in the type of small dipole antenna, which uses its outside shielding layer as a pair of antennas. Design of the sensor circuit and the test system are introduced in this paper. A calibration system for these pulsed field sensors is established and the test results verified the ability of the developed sensors for measurement of the standard electromagnetic pulse field (the half peak width is 25 ns and the rising time is 2.5 ns.

  10. Design and characterisation of a pulsed neutron interrogation facility

    International Nuclear Information System (INIS)

    Favalli, A.; Pedersen, B.

    2007-01-01

    The Joint Research Centre recently obtained a license to operate a new experimental device intended for research in the field of nuclear safeguards. The research projects currently being planned for the new device includes mass determination of fissile materials in matrices and detection of contraband non-nuclear materials. The device incorporates a commercial pulsed neutron generator and a large graphite mantle surrounding the sample cavity. In this configuration, a relatively high thermal neutron flux with a long lifetime is achieved inside the sample cavity. By pulsing the neutron generator, a sample may be interrogated by a pure thermal neutron flux during repeated time periods. The paper reports on the design of the new device and the pulsed fast and thermal neutron source. The thermal neutron flux caused by the neutron generator and the graphite structure has been characterised by foil activation, fission chamber and 3 He proportional counter measurements. (authors)

  11. Physics design of an ultra-long pulsed tokamak reactor

    International Nuclear Information System (INIS)

    Ogawa, Y.; Inoue, N.; Wang, J.; Yamamoto, T.; Okano, K.

    1993-01-01

    A pulsed tokamak reactor driven only by inductive current drive has recently revived, because the non-inductive current drive efficiency seems to be too low to realize a steady-state tokamak reactor with sufficiently high energy gain Q. Essential problems in pulsed operation mode is considered to be material fatigue due to cyclic operation and expensive energy storage system to keep continuous electric output during a dwell time. To overcome these problems, we have proposed an ultra-long pulsed tokamak reactor called IDLT (abbr. Inductively operated Day-Long Tokamak), which has the major and minor radii of 10 m and 1.87 m, respectively, sufficiently to ensure the burning period of about ten hours. Here we discuss physical features of inductively operated tokamak plasmas, employing the similar constraints with ITER CDA design for engineering issues. (author) 9 refs., 2 figs., 1 tab

  12. Bifurcation-free design method of pulse energy converter controllers

    International Nuclear Information System (INIS)

    Kolokolov, Yury; Ustinov, Pavel; Essounbouli, Najib; Hamzaoui, Abdelaziz

    2009-01-01

    In this paper, a design method of pulse energy converter (PEC) controllers is proposed. This method develops a classical frequency domain design, based on the small signal modeling, by means of an addition of a nonlinear dynamics analysis stage. The main idea of the proposed method consists in fact that the PEC controller, designed with an application of the small signal modeling, is tuned after with taking into the consideration an essentially nonlinear nature of the PEC that makes it possible to avoid bifurcation phenomena in the PEC dynamics at the design stage (bifurcation-free design). Also application of the proposed method allows an improvement of the designed controller performance. The application of this bifurcation-free design method is demonstrated on an example of the controller design of direct current-direct current (DC-DC) buck converter with an input electromagnetic interference filter.

  13. Design criteria for pulse transformers used in neutron detector pulse counting channels

    International Nuclear Information System (INIS)

    Powler, E.P.

    1963-10-01

    The need for long cables between the detector and head amplifier in neutron pulse counting channels has led to the development of systems in which a transformer is used to 'match' the high impedance of a fission or proportional counter to the characteristic impedance of the cable. A further transformer can be used to match the cable to the input of a low noise pulse amplifier if this has a high impedance. This report is intended to give the designer sufficient information to optimise a system and predict the performance in terms of signal to noise ratio, resolving time and gain. Related problems are covered and include the use of balanced twin cables, the requirements of temperatures up to 500 deg. C and the need for high interference rejection. Two systems are described in some detail to emphasise the principles of design. (author)

  14. MRI of the brain stem using fluid attenuated inversion recivery pulse sequences

    International Nuclear Information System (INIS)

    De Coene, B.; Hajnal, J.V.; Pennock, J.M.; Bydder, G.M.

    1993-01-01

    Heavily T2-weighted fluid-attenuated inversion recovery (FLAIR) sequences with inversion times of 2000-2500 ms and echo times of 130-200 ms were used to image the brain stem of a normal adult and five patients. These sequences produce high signal from many white matter tracts and display high lesion contrast. The corticospinal and parietopontine tracts, lateral and medial lemnisci, superior and inferior cerebellar peduncles, medial longitudinal fasciculi, thalamo-olivary tracts the cuneate and gracile fasiculi gave high signal and were directly visualised. The oculomotor and trigeminal nerves were demonstrated within the brain stem. Lesions not seen with conventional T2-weighted spin echo sequences were seen with high contrast in patients with infarction, multiple sclerosis, sarcoidosis, chunt obstruction and metastatic tumour. The anatomical detail and high lesion contrast given by the FLAIR pulse sequence appear likely to be of value in diagnosis of disease in the brain stem. (orig.)

  15. Optimal pulse-sequence parameters for MR imaging of the immature brain

    International Nuclear Information System (INIS)

    Nowell, M.A.; Hackney, D.B.; Zimmerman, R.A.; Bilaniuk, L.T.; Grossman, R.I.; Goldberg, H.I.

    1986-01-01

    Appropriate spin-echo pulse sequence parameters generate MR images with very high gray matter/white matter contrast in neonates and young infants. Low-contrast images appear to result from utilization of ''adult-type'' parameters to investigate tissues that have relaxation characteristics quite different than those of adult brain. In these young patients long spin-echo sequences with repetition times of 3,000-3,500 msec and multiple echoes with the longest echo time set at 120-160 msec are employed to yield high-contrast ''T2-weighted'' images

  16. Intensity stabilisation of optical pulse sequences for coherent control of laser-driven qubits

    Science.gov (United States)

    Thom, Joseph; Yuen, Ben; Wilpers, Guido; Riis, Erling; Sinclair, Alastair G.

    2018-05-01

    We demonstrate a system for intensity stabilisation of optical pulse sequences used in laser-driven quantum control of trapped ions. Intensity instability is minimised by active stabilisation of the power (over a dynamic range of > 104) and position of the focused beam at the ion. The fractional Allan deviations in power were found to be logic gates to be below 10^{-6} per gate.

  17. Design and fabrication of a pulsed diode electron gun

    International Nuclear Information System (INIS)

    Mahadevan, S.; Gandhi, M.L.; Nandedkar, R.V.

    2003-01-01

    A pulsed diode electron gun has been designed, fabricated and tested and this will be used for the initial hot testing of the Plane Wave Transformer (PWT) linac. The gun is required to deliver 1 A at 70 kV which works out to a current of 500 mA at 40 kV. The gun geometry is optimized using the Electron Trajectory Program EGUN at a mesh size of 0.2 mm. The beam divergence close to cathode caused by an annular gap of 2 mm between cathode and focusing electrode (FE) is compensated by using a suitable focusing electrode. Important features of the pulsed power supply (40 kV, 500 mA, 2 μsec) developed for testing this gun are presented. The current measured at the Faraday cup is in agreement with the designed perveance. Suitable positioning of cathode with respect to the FE helps in further improving the beam quality

  18. Design of a bounded wave EMP (Electromagnetic Pulse) simulator

    Science.gov (United States)

    Sevat, P. A. A.

    1989-06-01

    Electromagnetic Pulse (EMP) simulators are used to simulate the EMP generated by a nuclear weapon and to harden equipment against the effects of EMP. At present, DREO has a 1 m EMP simulator for testing computer terminal size equipment. To develop the R and D capability for testing larger objects, such as a helicopter, a much bigger threat level facility is required. This report concerns the design of a bounded wave EMP simulator suitable for testing large size equipment. Different types of simulators are described and their pros and cons are discussed. A bounded wave parallel plate type simulator is chosen for it's efficiency and the least environmental impact. Detailed designs are given for 6 m and 10 m parallel plate type wire grid simulators. Electromagnetic fields inside and outside the simulators are computed. Preliminary specifications for a pulse generator required for the simulator are also given. Finally, the electromagnetic fields radiated from the simulator are computed and discussed.

  19. Design of a pulsed switching magnet for the Bevalac

    International Nuclear Information System (INIS)

    Abbott, S.; Alonso, J.; Brown, J.; Kalnins, J.; Krebs, G.; Reimers, R.

    1989-03-01

    The design and construction of a water cooled, pulsed, laminated core dipole magnet which has recently been installed at the Bevalac is described. This new, energy efficient magnet was funded by the DOE In-House Energy Management Program. The magnet has been specifically designed for maximum efficiency in power utilization and has replaced two dc powered magnets in the Bevalac switchyard. It will reduce energy usage by 747 MWh/yr, and it provides the capability of pulse-to-pulse switching in 0.7 seconds between two major beamline channels serving the nuclear science and radiotherapy programs at the /Bevalac. A unique feature of this magnet is the core design which utilizes an external structure that remains integral with the core laminations after assembly. The structure provides for both torsional and longitudinal rigidity of the core while also facilitating the precision assembly and compression of the core laminations without the use of special assembly fixtures. 2 refs., 4 figs., 1 tab

  20. Is sequence awareness mandatory for perceptual sequence learning: An assessment using a pure perceptual sequence learning design.

    Science.gov (United States)

    Deroost, Natacha; Coomans, Daphné

    2018-02-01

    We examined the role of sequence awareness in a pure perceptual sequence learning design. Participants had to react to the target's colour that changed according to a perceptual sequence. By varying the mapping of the target's colour onto the response keys, motor responses changed randomly. The effect of sequence awareness on perceptual sequence learning was determined by manipulating the learning instructions (explicit versus implicit) and assessing the amount of sequence awareness after the experiment. In the explicit instruction condition (n = 15), participants were instructed to intentionally search for the colour sequence, whereas in the implicit instruction condition (n = 15), they were left uninformed about the sequenced nature of the task. Sequence awareness after the sequence learning task was tested by means of a questionnaire and the process-dissociation-procedure. The results showed that the instruction manipulation had no effect on the amount of perceptual sequence learning. Based on their report to have actively applied their sequence knowledge during the experiment, participants were subsequently regrouped in a sequence strategy group (n = 14, of which 4 participants from the implicit instruction condition and 10 participants from the explicit instruction condition) and a no-sequence strategy group (n = 16, of which 11 participants from the implicit instruction condition and 5 participants from the explicit instruction condition). Only participants of the sequence strategy group showed reliable perceptual sequence learning and sequence awareness. These results indicate that perceptual sequence learning depends upon the continuous employment of strategic cognitive control processes on sequence knowledge. Sequence awareness is suggested to be a necessary but not sufficient condition for perceptual learning to take place. Copyright © 2018 Elsevier B.V. All rights reserved.

  1. Influence of crosstalk on the fast fluid attenuated inversion recovery pulse sequence

    Energy Technology Data Exchange (ETDEWEB)

    Urata, Tohru; Nonoshita, Koji; Miyazaki, Takayuki; Arima, Akira [Funabashi Municipal Medical Center, Chiba (Japan)

    2000-04-01

    The influence of crosstalk on the fast fluid attenuated inversion recovery (fast FLAIR) pulse sequence was studied. On multislice fast FLAIR images, the water null point was shortened in comparison with that on single slice images owing to the crosstalk received from adjacent slices. That influence became greater with decreases in the slice gap and increases in the number of slices. The timing of crosstalk in each slice varied according to excitation order. The process of recovery of longitudinal magnetization changed according to differences in timing; thus, it was possible that the water null point changed in each slice. In brain images with thinner slice gaps, the signal intensity of CSF is increased by the effect of crosstalk. In order to eliminate changes in the water null point caused by crosstalk on fast FLAIR, the multislice sequence requires a sequence with interleaving based on the premise that slice gaps are set for more than 100% of slice thickness. (author)

  2. Influence of crosstalk on the fast fluid attenuated inversion recovery pulse sequence

    International Nuclear Information System (INIS)

    Urata, Tohru; Nonoshita, Koji; Miyazaki, Takayuki; Arima, Akira

    2000-01-01

    The influence of crosstalk on the fast fluid attenuated inversion recovery (fast FLAIR) pulse sequence was studied. On multislice fast FLAIR images, the water null point was shortened in comparison with that on single slice images owing to the crosstalk received from adjacent slices. That influence became greater with decreases in the slice gap and increases in the number of slices. The timing of crosstalk in each slice varied according to excitation order. The process of recovery of longitudinal magnetization changed according to differences in timing; thus, it was possible that the water null point changed in each slice. In brain images with thinner slice gaps, the signal intensity of CSF is increased by the effect of crosstalk. In order to eliminate changes in the water null point caused by crosstalk on fast FLAIR, the multislice sequence requires a sequence with interleaving based on the premise that slice gaps are set for more than 100% of slice thickness. (author)

  3. Efficient and controllable thermal ablation induced by short-pulsed HIFU sequence assisted with perfluorohexane nanodroplets.

    Science.gov (United States)

    Chang, Nan; Lu, Shukuan; Qin, Dui; Xu, Tianqi; Han, Meng; Wang, Supin; Wan, Mingxi

    2018-07-01

    A HIFU sequence with extremely short pulse duration and high pulse repetition frequency can achieve thermal ablation at a low acoustic power using inertial cavitation. Because of its cavitation-dependent property, the therapeutic outcome is unreliable when the treatment zone lacks cavitation nuclei. To overcome this intrinsic limitation, we introduced perfluorocarbon nanodroplets as extra cavitation nuclei into short-pulsed HIFU-mediated thermal ablation. Two types of nanodroplets were used with perfluorohexane (PFH) as the core material coated with bovine serum albumin (BSA) or an anionic fluorosurfactant (FS) to demonstrate the feasibility of this study. The thermal ablation process was recorded by high-speed photography. The inertial cavitation activity during the ablation was revealed by sonoluminescence (SL). The high-speed photography results show that the thermal ablation volume increased by ∼643% and 596% with BSA-PFH and FS-PFH, respectively, than the short-pulsed HIFU alone at an acoustic power of 19.5 W. Using nanodroplets, much larger ablation volumes were created even at a much lower acoustic power. Meanwhile, the treatment time for ablating a desired volume significantly reduced in the presence of nanodroplets. Moreover, by adjusting the treatment time, lesion migration towards the HIFU transducer could also be avoided. The SL results show that the thermal lesion shape was significantly dependent on the inertial cavitation in this short-pulsed HIFU-mediated thermal ablation. The inertial cavitation activity became more predictable by using nanodroplets. Therefore, the introduction of PFH nanodroplets as extra cavitation nuclei made the short-pulsed HIFU thermal ablation more efficient by increasing the ablation volume and speed, and more controllable by reducing the acoustic power and preventing lesion migration. Copyright © 2018. Published by Elsevier B.V.

  4. Selection of optimal pulse sequences for conventional and dynamic MR imaging with Gd-DTPA; A fundamental study

    Energy Technology Data Exchange (ETDEWEB)

    Maeda, Miho; Kita, Keisuke; Maeda, Masayuki (Wakayama Medical Coll. (Japan)) (and others)

    1989-11-01

    Gadolinium-DTPA (Gd-DTPA) enhances contrast between tissues in magnetic resonance (MR) imaging. The enhancement of tissues depends partly upon the pulse sequences, and the optimal pulse sequence is also influenced by the tissue cncentration of Gd-DTPA. We prepared phantoms of 25% albumin solutions with various concentrations of Gd-DTPA, and imaged them using various pulse sequences with 1.5-T MR system. We also performed MR imaging of 16 patients with tumors (10 brain tumors and 6 hepatic tumors) before and after intravenous administration of Gd-DTPA (0.1 mmol/kg); 6 patients with hepatic tumors underwent dynamic MR imaging during suspended respiration. We made a theoretical equation to calculate the concentration of Gd-DTPA and estimated its tissue concentration in tumors at 0{approx}0.2 mmol/kg. Within these tissue concentrations, the enhancement-to-noise (E/N) ratio was larger in FISP (flip angle of 90deg, TR pf 300 msec, minimal TE) and SE (TR of 400 msec, minimal TE) sequences than in other sequences observed. These sequences may be preferable for conventional enhanced-MRI. Among the pulse sequences with TR of less than 100 msec, FISP (flip angle of 90deg, TR of less than 100 msec, minimal TE) had the largest E/N ratio; which may be useful for dynamic MRI during suspended respiration. The importance of selecting the optimal pulse sequences according to the imaging modality used will be discussed. (author).

  5. Design of Mariner 9 Science Sequences using Interactive Graphics Software

    Science.gov (United States)

    Freeman, J. E.; Sturms, F. M, Jr.; Webb, W. A.

    1973-01-01

    This paper discusses the analyst/computer system used to design the daily science sequences required to carry out the desired Mariner 9 science plan. The Mariner 9 computer environment, the development and capabilities of the science sequence design software, and the techniques followed in the daily mission operations are discussed. Included is a discussion of the overall mission operations organization and the individual components which played an essential role in the sequence design process. A summary of actual sequences processed, a discussion of problems encountered, and recommendations for future applications are given.

  6. Zero sequence blocking transformers for multi-pulse rectifier in aerospace applications

    DEFF Research Database (Denmark)

    Yao, Wenli; Blaabjerg, Frede; Zhang, Xiaobin

    2014-01-01

    The power electronics technology plays an even more important role in the aerospace applications of More Electric Aircrafts (MEA). AutoTransformer Rectifier Units (ATRU) have been widely adopted in aircrafts due to its simplicity and reliability. In this paper, Zero Sequence Blocking Transformers...... (ZSBT) are employed in the DC link to realize parallel rectifier bridges for ATRU, being the proposed 24-pulse rectifier. A star-connected autotransformer is used in this topology to divide the primary side voltage into four three-phase voltage groups, among which there is a phase shift of 15......°. The autotransformer then feeds the load through rectifier bridges, which are in parallel with ZSBTs. Compared to the traditional method that is using six interphase transformers to parallel the rectifier bridges; the proposed 24-pulse rectifier only requires four ZSBTs. This will contribute to a reduction of weight...

  7. Pulse sequences for suppressing leakage in single-qubit gate operations

    Science.gov (United States)

    Ghosh, Joydip; Coppersmith, S. N.; Friesen, Mark

    2017-06-01

    Many realizations of solid-state qubits involve couplings to leakage states lying outside the computational subspace, posing a threat to high-fidelity quantum gate operations. Mitigating leakage errors is especially challenging when the coupling strength is unknown, e.g., when it is caused by noise. Here we show that simple pulse sequences can be used to strongly suppress leakage errors for a qubit embedded in a three-level system. As an example, we apply our scheme to the recently proposed charge quadrupole (CQ) qubit for quantum dots. These results provide a solution to a key challenge for fault-tolerant quantum computing with solid-state elements.

  8. Compact field programmable gate array-based pulse-sequencer and radio-frequency generator for experiments with trapped atoms

    Energy Technology Data Exchange (ETDEWEB)

    Pruttivarasin, Thaned, E-mail: thaned.pruttivarasin@riken.jp [Quantum Metrology Laboratory, RIKEN, Wako-shi, Saitama 351-0198 (Japan); Katori, Hidetoshi [Quantum Metrology Laboratory, RIKEN, Wako-shi, Saitama 351-0198 (Japan); Innovative Space-Time Project, ERATO, JST, Bunkyo-ku, Tokyo 113-8656 (Japan); Department of Applied Physics, Graduate School of Engineering, The University of Tokyo, Bunkyo-ku, Tokyo 113-8656 (Japan)

    2015-11-15

    We present a compact field-programmable gate array (FPGA) based pulse sequencer and radio-frequency (RF) generator suitable for experiments with cold trapped ions and atoms. The unit is capable of outputting a pulse sequence with at least 32 transistor-transistor logic (TTL) channels with a timing resolution of 40 ns and contains a built-in 100 MHz frequency counter for counting electrical pulses from a photo-multiplier tube. There are 16 independent direct-digital-synthesizers RF sources with fast (rise-time of ∼60 ns) amplitude switching and sub-mHz frequency tuning from 0 to 800 MHz.

  9. Discriminatory usefulness of pulsed-field gel electrophoresis and sequence-based typing in Legionella outbreaks.

    Science.gov (United States)

    Quero, Sara; García-Núñez, Marian; Párraga-Niño, Noemí; Barrabeig, Irene; Pedro-Botet, Maria L; de Simon, Mercè; Sopena, Nieves; Sabrià, Miquel

    2016-06-01

    To compare the discriminatory power of pulsed-field gel electrophoresis (PFGE) and sequence-based typing (SBT) in Legionella outbreaks for determining the infection source. Twenty-five investigations of Legionnaires' disease were analyzed by PFGE, SBT and Dresden monoclonal antibody. The results suggested that monoclonal antibody could reduce the number of Legionella isolates to be characterized by molecular methods. The epidemiological concordance PFGE-SBT was 100%, while the molecular concordance was 64%. Adjusted Wallace index (AW) showed that PFGE has better discriminatory power than SBT (AWSBT→PFGE = 0.767; AWPFGE→SBT = 1). The discrepancies appeared mostly in sequence type (ST) 1, a worldwide distributed ST for which PFGE discriminated different profiles. SBT discriminatory power was not sufficient verifying the infection source, especially in worldwide distributed STs, which were classified into different PFGE patterns.

  10. Conceptual design of a 20 Tesla pulsed solenoid for a laser solenoid fusion reactor

    International Nuclear Information System (INIS)

    Nolan, J.J.; Averill, R.J.

    1977-01-01

    Design considerations are described for a strip wound solenoid which is pulsed to 20 tesla while immersed in a 20 tesla bias field so as to achieve within the bore of the pulsed solenoid at net field sequence starting at 20 tesla and going first down to zero, then up to 40 tesla, and finally back to 20 tesla in a period of about 5 x 10 -3 seconds. The important parameters of the solenoid, e.g., aperture, build, turns, stored and dissipated energy, field intensity and powering circuit, are given. A numerical example for a specific design is presented. Mechanical stresses in the solenoid and the subsequent choice of materials for coil construction are discussed. Although several possible design difficulties are not discussed in this preliminary report of a conceptual magnet design, such as uniformity of field, long-term stability of insulation under neutron bombardment and choice of structural materials of appropriate tensile strength and elasticity to withstand magnetic forces developed, these questions are addressed in detail in the complete design report and in part in reference one. Furthermore, the authors feel that the problems encountered in this conceptual design are surmountable and are not a hindrance to the construction of such a magnet system

  11. Comparison of different pulse sequences for in vivo determination of T1 relaxation times in the human brain

    DEFF Research Database (Denmark)

    Kjaer, L; Henriksen, O

    1988-01-01

    ). T1 measurements were performed on the human brain using a whole body MR scanner operating at 1.5 tesla. Three different pulse sequences were compared including two 6-points inversion recovery (IR) sequences with TR = 2.0 s and 4.0, respectively, and a 12-points partial saturation inversion recovery...

  12. Frequency-locked pulse sequencer for high-frame-rate monochromatic tissue motion imaging.

    Science.gov (United States)

    Azar, Reza Zahiri; Baghani, Ali; Salcudean, Septimiu E; Rohling, Robert

    2011-04-01

    To overcome the inherent low frame rate of conventional ultrasound, we have previously presented a system that can be implemented on conventional ultrasound scanners for high-frame-rate imaging of monochromatic tissue motion. The system employs a sector subdivision technique in the sequencer to increase the acquisition rate. To eliminate the delays introduced during data acquisition, a motion phase correction algorithm has also been introduced to create in-phase displacement images. Previous experimental results from tissue- mimicking phantoms showed that the system can achieve effective frame rates of up to a few kilohertz on conventional ultrasound systems. In this short communication, we present a new pulse sequencing strategy that facilitates high-frame-rate imaging of monochromatic motion such that the acquired echo signals are inherently in-phase. The sequencer uses the knowledge of the excitation frequency to synchronize the acquisition of the entire imaging plane to that of an external exciter. This sequencing approach eliminates any need for synchronization or phase correction and has applications in tissue elastography, which we demonstrate with tissue-mimicking phantoms. © 2011 IEEE

  13. Comparison of MRI pulse sequences for investigation of lesions of the cervical spinal cord

    International Nuclear Information System (INIS)

    Campi, A.; Pontesilli, S.; Gerevini, S.; Scotti, G.

    2000-01-01

    Small spinal cord lesions, even if clinically significant, can be due to the low sensitivity of some pulse sequences. We compared T2-weighted fast (FSE), and conventional (CSE) spin-echo and short-tau inversion-recovery (STIR)-FSE overlooked on MRI sequences to evaluate their sensitivity to and specificity for lesions of different types. We compared the three sequences in MRI of 57 patients with cervical spinal symptoms. The image sets were assessed by two of us individually for final diagnosis, lesion detectability and image quality. Both readers arrived at the same final diagnoses with all sequences, differentiating four groups of patients. Group 1 (30 patients, 53 %), with a final diagnosis of multiple sclerosis (MS). Demyelinating lesions were better seen on STIR-FSE images, on which the number of lesions was significantly higher than on FSE, while the FSE and CSE images showed approximately equal numbers of lesions; additional lesions were found in 9 patients. The contrast-to-noise ratio (CNR) of 17 demyelinating lesions was significantly higher on STIR-FSE images than with the other sequences. Group 2, 19 patients (33 %) with cervical pain, 15 of whom had disc protrusion or herniation: herniated discs were equally well delineated with all sequences, with better myelographic effect on FSE. In five patients with intrinsic spinal cord abnormalities, the conspicuity and demarcation of the lesions were similar with STIR-FSE and FSE. Group 3, 4 patients (7 %) with acute myelopathy of unknown aetiology. In two patients, STIR-FSE gave better demarcation of lesions and in one a questionable additional lesions. Group 4, 4 patients (7 %) with miscellaneous final diagnoses. STIR-FSE had high sensitivity to demyelinating lesions, can be considered quite specific and should be included in spinal MRI for assessment of suspected demyelinating disease. (orig.)

  14. Spreading Sequence Design and Theoretical Limits for Quasisynchronous CDMA Systems

    Directory of Open Access Journals (Sweden)

    Fan Pingzhi

    2004-01-01

    Full Text Available For various quasisynchronous (QS CDMA systems such as LAS-CDMA system which emerged recently, in order to reduce or eliminate the multiple access interference and multipath interference, it is required to design a set of spreading sequences which are mutually orthogonal within a designed shift zone, called orthogonal zone. For traditional orthogonal sequences, such as Walsh sequences and orthogonal Gold sequences, the orthogonality can only be achieved at the inphase point; in other words, the orthogonality is destroyed whenever there is a relative shift between the sequences, that is, their orthogonal zone is 0. In this paper, new concepts of generalized orthogonality (GO and generalized quasiorthogonality (GQO for spreading sequence design in both direct sequence (DS QS-CDMA systems and time/frequency hopping (TH/FH QS-CDMA systems are presented. Besides, selected GO/GQO sequence designs and general theoretical periodic and aperiodic limits, together with several applications in QS-CDMA systems, are also reviewed and analyzed.

  15. Comparative study and application of MR sialography using different pulse sequences

    International Nuclear Information System (INIS)

    Shi Ruihua; Qi Jianping; Feng Dingyi; Zou Mingli; Hu Junwu; Zhu Wenzhen; Xia Liming; Wang Chengyuan

    2004-01-01

    Objective: To evaluate the accuracy of MR sialography in demonstrating the main salivary duct systems by using a series of pulse sequences and stimulation of salivation by vitamin C. Methods: MR sialography was prospectively performed with STIR, heavily T 2 weighted FSE, and SS FSE sequences in 17 patients suspected with salivary duct abnormalities and 13 volunteers, respectively, and MR sialography was further performed in 16 patients after vitamin C stimulation. The results of the above three sequences were compared with each other. Results: The main salivary gland duct was depicted in all cases by any of the mentioned sequence. The STIR images were significantly superior to SS FSE and heavily T 2 weighted FSE images for demonstrating the salivary duct system, followed by heavily T 2 weighted FSE images. On STIR images, first- and second- order intraglandular branches were clearly depicted in all cases, and the thinnest branches were about 0.8 mm. On heavily T 2 weighted FSE images, the first-order and the second-order intraglandular branches were delineated in 25 of 30 and 18 of 30 cases, respectively. But on SS FSE images, only 20 to 30 first-order and 10 of 30 second-order intraglandular branches could be detected. MR sialography with vitamin C stimulation revealed the good visualization of the salivary duct system, and the ducts became wider than before. In 7 cases with acute sialadenitis, the main duct became slightly wider and the distal ducts were dilated; In 7 cases with benign tumor, the ducts were displaced but remained continuous; The duct in one patients with submandibular gland cancer showed destruction and discontinuity. The ducts of one patient with Sjogren syndrome and one with sialidosis displayed normal. Conclusion: MR sialography with evoked salivation is noninvasive and allows delineation of both normal and abnormal parotid and submandibular gland duct systems, and the images are especially better on STIR sequence

  16. Pulsed air-core deflector-magnet design parameters

    International Nuclear Information System (INIS)

    Jason, A.J.; Cooper, R.K.; Liebman, A.D.; Blind, B.; Koelle, A.R.

    1983-01-01

    The response of air-core magnets to pulsed excitation is dependent on the pulse frequency spectrum because of fields produced by induced currents in the magnet structure. We discuss this phenomenon quantitatively in terms of magnet performance optimization

  17. Design of compressors for FEL pulses using deformable gratings

    Science.gov (United States)

    Bonora, Stefano; Fabris, Nicola; Frassetto, Fabio; Giovine, Ennio; Miotti, Paolo; Quintavalla, Martino; Poletto, Luca

    2017-06-01

    We present the optical layout of soft X-rays compressors using reflective grating specifically designed to give both positive or negative group-delay dispersion (GDD). They are tailored for chirped-pulse-amplification experiments with FEL sources. The optical design originates from an existing compressor with plane gratings already realized and tested at FERMI, that has been demonstrated capable to introduce tunable negative GDD. Here, we discuss two novel designs for compressors using deformable gratings capable to give both negative and positive GDD. Two novel designs are discussed: 1) a design with two deformable gratings and an intermediate focus between the twos, that is demonstrated capable to introduce positive GDD; 2) a design with one deformable grating giving an intermediate focus, followed by a concave mirror and a plane grating, that is capable to give both positive and negative GDD depending on the distance between the second mirror and the second grating. Both the designs are tunable in wavelength and GDD, by acting on the deformable gratings, that are rotated to tune the wavelength and the GDD and deformed to introduce the radius required to keep the spectral focus. The deformable gratings have a laminar profile and are ruled on a thin silicon plane substrate. A piezoelectric actuator is glued on the back of the substrate and is actuated to give a radius of curvature that is varying from infinite (plane) to few meters. The ruling procedure, the piezoelectric actuator and the efficiency measurements in the soft X-rays will be presented. Some test cases are discussed for wavelengths shorter than 12 nm.

  18. Pulse length assessment of compact ignition tokamak designs

    International Nuclear Information System (INIS)

    Stotler, D.P.; Pomphrey, N.

    1989-07-01

    A time-dependent zero-dimensional code has been developed to assess the pulse length and auxiliary heating requirements of Compact Ignition Tokamak (CIT) designs. By taking a global approach to the calculation, parametric studies can be easily performed. The accuracy of the procedure is tested by comparing with the Tokamak Simulation Code which uses theory-based thermal diffusivities. A series of runs is carried out at various levels of energy confinement for each of three possible CIT configurations. It is found that for cases of interest, ignition or an energy multiplication factor Q /approxreverse arrowgt/ 7 can be attained within the first half of the planned five-second flattop with 10--40 MW of auxiliary heating. These results are supported by analytic calculations. 18 refs., 7 figs., 2 tabs

  19. Ignitor electrode system design for the pulses electron irradiators device

    International Nuclear Information System (INIS)

    Lely Susita RM; Ihwanul Aziz

    2016-01-01

    The designed ignitor electrode system is a system used to initiate the plasma discharge. It consists of two pieces which are placed on both side of the plasma vessel. Each of the ignitor electrode system consists of a cathode, an anode and insulator between the cathode and the anode. The best cathode material for ignitor electrode system is Mg due to its lowest ion erosion rate (γi =11.7 μg/C) and its low cohesive energy (1.51 eV). The specifications of ignitor electrode system designed for the pulse electron irradiators is as follow: Mg cathode materials in the form of rod having a diameter of 6.35 mm and length of 76.75 mm. Anode material are made of non magnetic of SS 304 cylinder shaped with an outer diameter of 88.53 mm, an inner diameter of 81.53 mm and a thickness of 3.50 mm. Insulating material between the cathode and the anode is made of teflon cylinder shaped, outer diameter of 9.50 mm, an inner diameter of 6.35 mm and a length of 30 mm. Based on the ignitor electrode system design, the next step is construction and function test of the ignitor electrode system. (author)

  20. Exploiting ecology in drug pulse sequences in favour of population reduction.

    Directory of Open Access Journals (Sweden)

    Marianne Bauer

    2017-09-01

    Full Text Available A deterministic population dynamics model involving birth and death for a two-species system, comprising a wild-type and more resistant species competing via logistic growth, is subjected to two distinct stress environments designed to mimic those that would typically be induced by temporal variation in the concentration of a drug (antibiotic or chemotherapeutic as it permeates through the population and is progressively degraded. Different treatment regimes, involving single or periodical doses, are evaluated in terms of the minimal population size (a measure of the extinction probability, and the population composition (a measure of the selection pressure for resistance or tolerance during the treatment. We show that there exist timescales over which the low-stress regime is as effective as the high-stress regime, due to the competition between the two species. For multiple periodic treatments, competition can ensure that the minimal population size is attained during the first pulse when the high-stress regime is short, which implies that a single short pulse can be more effective than a more protracted regime. Our results suggest that when the duration of the high-stress environment is restricted, a treatment with one or multiple shorter pulses can produce better outcomes than a single long treatment. If ecological competition is to be exploited for treatments, it is crucial to determine these timescales, and estimate for the minimal population threshold that suffices for extinction. These parameters can be quantified by experiment.

  1. Preliminary design of a 100 Hz, 350 kV short pulse generator

    International Nuclear Information System (INIS)

    Rohwein, G.J.; Buttram, M.T.

    1977-06-01

    This report describes a 350 kV pulser designed to generate 100 ns square pulses with 300 joules total energy at a pulse repetition frequency of 100 per second. This design incorporates a transformer charged helical coaxial pulse forming line. The considerations leading to this design are presented together with results from prototype experiments. The pulser which is presently in the construction and testing phase is described in detail. The pulser will be used for electron beam acceleration

  2. A novel constraint for thermodynamically designing DNA sequences.

    Directory of Open Access Journals (Sweden)

    Qiang Zhang

    Full Text Available Biotechnological and biomolecular advances have introduced novel uses for DNA such as DNA computing, storage, and encryption. For these applications, DNA sequence design requires maximal desired (and minimal undesired hybridizations, which are the product of a single new DNA strand from 2 single DNA strands. Here, we propose a novel constraint to design DNA sequences based on thermodynamic properties. Existing constraints for DNA design are based on the Hamming distance, a constraint that does not address the thermodynamic properties of the DNA sequence. Using a unique, improved genetic algorithm, we designed DNA sequence sets which satisfy different distance constraints and employ a free energy gap based on a minimum free energy (MFE to gauge DNA sequences based on set thermodynamic properties. When compared to the best constraints of the Hamming distance, our method yielded better thermodynamic qualities. We then used our improved genetic algorithm to obtain lower-bound DNA sequence sets. Here, we discuss the effects of novel constraint parameters on the free energy gap.

  3. Investigation of timing effects in modified composite quadrupolar echo pulse sequences by mean of average Hamiltonian theory

    Science.gov (United States)

    Mananga, Eugene Stephane

    2018-01-01

    The utility of the average Hamiltonian theory and its antecedent the Magnus expansion is presented. We assessed the concept of convergence of the Magnus expansion in quadrupolar spectroscopy of spin-1 via the square of the magnitude of the average Hamiltonian. We investigated this approach for two specific modified composite pulse sequences: COM-Im and COM-IVm. It is demonstrated that the size of the square of the magnitude of zero order average Hamiltonian obtained on the appropriated basis is a viable approach to study the convergence of the Magnus expansion. The approach turns to be efficient in studying pulse sequences in general and can be very useful to investigate coherent averaging in the development of high resolution NMR technique in solids. This approach allows comparing theoretically the two modified composite pulse sequences COM-Im and COM-IVm. We also compare theoretically the current modified composite sequences (COM-Im and COM-IVm) to the recently published modified composite pulse sequences (MCOM-I, MCOM-IV, MCOM-I_d, MCOM-IV_d).

  4. Design of high power solid-state pulsed laser resonators

    International Nuclear Information System (INIS)

    Narro, R.; Ponce, L.; Arronte, M.

    2009-01-01

    Methods and configurations for the design of high power solid-state pulsed laser resonators, operating in free running, are presented. For fundamental mode high power resonators, a method is proposed for the design of a resonator with joined stability zones. In the case of multimode resonators, two configurations are introduced for maximizing the laser overall efficiency due to the compensation of the astigmatism induced by the excitation. The first configuration consists in a triangular ring resonator. The results for this configuration are discussed theoretically, showing that it is possible to compensate the astigmatism of the thermal lens virtually in a 100%; however this is only possible for a specific pumping power. The second configuration proposes a dual-active medium resonator, rotated 90 degree one from the other around the optical axis, where each active medium acts as an astigmatic lens of the same dioptric power. The reliability of this configuration is corroborated experimentally using a Nd:YAG dual-active medium resonator. It is found that in the pumping power range where the astigmatism compensation is possible, the overall efficiency is constant, even when increasing the excitation power with the consequent increase of the thermal lens dioptric power. (Author)

  5. Pulsed magnetization transfer contrast MRI by a sequence with water selective excitation

    Energy Technology Data Exchange (ETDEWEB)

    Schick, F. [Univ. of Tuebingen (Germany)

    1996-01-01

    A water selective SE imaging sequence was developed providing suitable properties for the assessment of magnetization transfer (MT) effects in tissues with considerable amounts of fat. The sequence with water selective excitation and slice selective refocusing combines the following features: The RIF exposure on the macromolecular protons is relatively low for single slice imaging without MT prepulses, since no additional pulses for fat saturation are necessary. Water selection by frequency selective excitation diminishes faults in the subtraction of images recorded with and without MT prepulses (which might arise from movements). High differences in the signal amplitudes from hyaline cartilage and muscle tissue were obtained comparing images recorded with irradiation of the series of prepulses for MT and those lacking MT prepulses. Utilizations of the described water selective approach for the assessment of MT effects in lesions of cartilage and bone are demonstrated. MT saturation was also examined in muscles with fatty degeneration of patients suffering from progressive muscular dystrophy. The described technique allows determination of MT effects with good precision in a single slice, especially in regions with dominating fat signals. 22 refs., 5 figs.

  6. Use of designed sequences in protein structure recognition.

    Science.gov (United States)

    Kumar, Gayatri; Mudgal, Richa; Srinivasan, Narayanaswamy; Sandhya, Sankaran

    2018-05-09

    Knowledge of the protein structure is a pre-requisite for improved understanding of molecular function. The gap in the sequence-structure space has increased in the post-genomic era. Grouping related protein sequences into families can aid in narrowing the gap. In the Pfam database, structure description is provided for part or full-length proteins of 7726 families. For the remaining 52% of the families, information on 3-D structure is not yet available. We use the computationally designed sequences that are intermediately related to two protein domain families, which are already known to share the same fold. These strategically designed sequences enable detection of distant relationships and here, we have employed them for the purpose of structure recognition of protein families of yet unknown structure. We first measured the success rate of our approach using a dataset of protein families of known fold and achieved a success rate of 88%. Next, for 1392 families of yet unknown structure, we made structural assignments for part/full length of the proteins. Fold association for 423 domains of unknown function (DUFs) are provided as a step towards functional annotation. The results indicate that knowledge-based filling of gaps in protein sequence space is a lucrative approach for structure recognition. Such sequences assist in traversal through protein sequence space and effectively function as 'linkers', where natural linkers between distant proteins are unavailable. This article was reviewed by Oliviero Carugo, Christine Orengo and Srikrishna Subramanian.

  7. Automated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencing

    Directory of Open Access Journals (Sweden)

    Li Kelvin

    2012-11-01

    Full Text Available Abstract Background In a high-throughput environment, to PCR amplify and sequence a large set of viral isolates from populations that are potentially heterogeneous and continuously evolving, the use of degenerate PCR primers is an important strategy. Degenerate primers allow for the PCR amplification of a wider range of viral isolates with only one set of pre-mixed primers, thus increasing amplification success rates and minimizing the necessity for genome finishing activities. To successfully select a large set of degenerate PCR primers necessary to tile across an entire viral genome and maximize their success, this process is best performed computationally. Results We have developed a fully automated degenerate PCR primer design system that plays a key role in the J. Craig Venter Institute’s (JCVI high-throughput viral sequencing pipeline. A consensus viral genome, or a set of consensus segment sequences in the case of a segmented virus, is specified using IUPAC ambiguity codes in the consensus template sequence to represent the allelic diversity of the target population. PCR primer pairs are then selected computationally to produce a minimal amplicon set capable of tiling across the full length of the specified target region. As part of the tiling process, primer pairs are computationally screened to meet the criteria for successful PCR with one of two described amplification protocols. The actual sequencing success rates for designed primers for measles virus, mumps virus, human parainfluenza virus 1 and 3, human respiratory syncytial virus A and B and human metapneumovirus are described, where >90% of designed primer pairs were able to consistently successfully amplify >75% of the isolates. Conclusions Augmenting our previously developed and published JCVI Primer Design Pipeline, we achieved similarly high sequencing success rates with only minor software modifications. The recommended methodology for the construction of the consensus

  8. Design of universal parallel-transmit refocusing kT -point pulses and application to 3D T2 -weighted imaging at 7T.

    Science.gov (United States)

    Gras, Vincent; Mauconduit, Franck; Vignaud, Alexandre; Amadon, Alexis; Le Bihan, Denis; Stöcker, Tony; Boulant, Nicolas

    2018-07-01

    T 2 -weighted sequences are particularly sensitive to the radiofrequency (RF) field inhomogeneity problem at ultra-high-field because of the errors accumulated by the imperfections of the train of refocusing pulses. As parallel transmission (pTx) has proved particularly useful to counteract RF heterogeneities, universal pulses were recently demonstrated to save precious time and computational efforts by skipping B 1 calibration and online RF pulse tailoring. Here, we report a universal RF pulse design for non-selective refocusing pulses to mitigate the RF inhomogeneity problem at 7T in turbo spin-echo sequences with variable flip angles. Average Hamiltonian theory was used to synthetize a single non-selective refocusing pulse with pTx while optimizing its scaling properties in the presence of static field offsets. The design was performed under explicit power and specific absorption rate constraints on a database of 10 subjects using a 8Tx-32Rx commercial coil at 7T. To validate the proposed design, the RF pulses were tested in simulation and applied in vivo on 5 additional test subjects. The root-mean-square rotation angle error (RA-NRMSE) evaluation and experimental data demonstrated great improvement with the proposed universal pulses (RA-NRMSE ∼8%) compared to the standard circularly polarized mode of excitation (RA-NRMSE ∼26%). This work further completes the spectrum of 3D universal pulses to mitigate RF field inhomogeneity throughout all 3D MRI sequences without any pTx calibration. The approach returns a single pulse that can be scaled to match the desired flip angle train, thereby increasing the modularity of the proposed plug and play approach. Magn Reson Med 80:53-65, 2018. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

  9. Multilocus Sequence Typing Scheme versus Pulsed-Field Gel Electrophoresis for Typing Mycobacterium abscessus Isolates

    Science.gov (United States)

    Machado, Gabriel Esquitini; Matsumoto, Cristianne Kayoko; Chimara, Erica; Duarte, Rafael da Silva; de Freitas, Denise; Palaci, Moises; Hadad, David Jamil; Lima, Karla Valéria Batista; Lopes, Maria Luiza; Ramos, Jesus Pais; Campos, Carlos Eduardo; Caldas, Paulo César; Heym, Beate

    2014-01-01

    Outbreaks of infections by rapidly growing mycobacteria following invasive procedures, such as ophthalmological, laparoscopic, arthroscopic, plastic, and cardiac surgeries, mesotherapy, and vaccination, have been detected in Brazil since 1998. Members of the Mycobacterium chelonae-Mycobacterium abscessus group have caused most of these outbreaks. As part of an epidemiological investigation, the isolates were typed by pulsed-field gel electrophoresis (PFGE). In this project, we performed a large-scale comparison of PFGE profiles with the results of a recently developed multilocus sequence typing (MLST) scheme for M. abscessus. Ninety-three isolates were analyzed, with 40 M. abscessus subsp. abscessus isolates, 47 M. abscessus subsp. bolletii isolates, and six isolates with no assigned subspecies. Forty-five isolates were obtained during five outbreaks, and 48 were sporadic isolates that were not associated with outbreaks. For MLST, seven housekeeping genes (argH, cya, glpK, gnd, murC, pta, and purH) were sequenced, and each isolate was assigned a sequence type (ST) from the combination of obtained alleles. The PFGE patterns of DraI-digested DNA were compared with the MLST results. All isolates were analyzable by both methods. Isolates from monoclonal outbreaks showed unique STs and indistinguishable or very similar PFGE patterns. Thirty-three STs and 49 unique PFGE patterns were identified among the 93 isolates. The Simpson's index of diversity values for MLST and PFGE were 0.69 and 0.93, respectively, for M. abscessus subsp. abscessus and 0.96 and 0.97, respectively, for M. abscessus subsp. bolletii. In conclusion, the MLST scheme showed 100% typeability and grouped monoclonal outbreak isolates in agreement with PFGE, but it was less discriminative than PFGE for M. abscessus. PMID:24899019

  10. Multilocus sequence typing scheme versus pulsed-field gel electrophoresis for typing Mycobacterium abscessus isolates.

    Science.gov (United States)

    Machado, Gabriel Esquitini; Matsumoto, Cristianne Kayoko; Chimara, Erica; Duarte, Rafael da Silva; de Freitas, Denise; Palaci, Moises; Hadad, David Jamil; Lima, Karla Valéria Batista; Lopes, Maria Luiza; Ramos, Jesus Pais; Campos, Carlos Eduardo; Caldas, Paulo César; Heym, Beate; Leão, Sylvia Cardoso

    2014-08-01

    Outbreaks of infections by rapidly growing mycobacteria following invasive procedures, such as ophthalmological, laparoscopic, arthroscopic, plastic, and cardiac surgeries, mesotherapy, and vaccination, have been detected in Brazil since 1998. Members of the Mycobacterium chelonae-Mycobacterium abscessus group have caused most of these outbreaks. As part of an epidemiological investigation, the isolates were typed by pulsed-field gel electrophoresis (PFGE). In this project, we performed a large-scale comparison of PFGE profiles with the results of a recently developed multilocus sequence typing (MLST) scheme for M. abscessus. Ninety-three isolates were analyzed, with 40 M. abscessus subsp. abscessus isolates, 47 M. abscessus subsp. bolletii isolates, and six isolates with no assigned subspecies. Forty-five isolates were obtained during five outbreaks, and 48 were sporadic isolates that were not associated with outbreaks. For MLST, seven housekeeping genes (argH, cya, glpK, gnd, murC, pta, and purH) were sequenced, and each isolate was assigned a sequence type (ST) from the combination of obtained alleles. The PFGE patterns of DraI-digested DNA were compared with the MLST results. All isolates were analyzable by both methods. Isolates from monoclonal outbreaks showed unique STs and indistinguishable or very similar PFGE patterns. Thirty-three STs and 49 unique PFGE patterns were identified among the 93 isolates. The Simpson's index of diversity values for MLST and PFGE were 0.69 and 0.93, respectively, for M. abscessus subsp. abscessus and 0.96 and 0.97, respectively, for M. abscessus subsp. bolletii. In conclusion, the MLST scheme showed 100% typeability and grouped monoclonal outbreak isolates in agreement with PFGE, but it was less discriminative than PFGE for M. abscessus. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

  11. Design and application of pulse information acquisition and analysis ...

    African Journals Online (AJOL)

    ... two-dimensional information acquisition, multiplex signals combination and deep data mining. Conclusions: The newly developed system could translate the pulse signals into digital, visual and measurable motion information of vessel. Keywords: Visualized pulse information; Radial artery; B mode ultrasound; Traditional ...

  12. Genotypic characterization of Salmonella by multilocus sequence typing, pulsed-field gel electrophoresis and amplified fragment length polymorphism

    DEFF Research Database (Denmark)

    Torpdahl, Mia; Skov, Marianne N.; Sandvang, Dorthe

    2005-01-01

    subspecies enterica isolates. A total of 25 serotypes were investigated that had been isolated from humans or veterinary sources in Denmark between 1995 and 2001. All isolates were genotyped by multilocus sequence typing (MLST), pulsed-field gel electrophoresis (PFGE) and amplified fragment length...

  13. Simulations of NMR pulse sequences during equilibrium and non-equilibrium chemical exchange

    International Nuclear Information System (INIS)

    Helgstrand, Magnus; Haerd, Torleif; Allard, Peter

    2000-01-01

    The McConnell equations combine the differential equations for a simple two-state chemical exchange process with the Bloch differential equations for a classical description of the behavior of nuclear spins in a magnetic field. This equation system provides a useful starting point for the analysis of slow, intermediate and fast chemical exchange studied using a variety of NMR experiments. The McConnell equations are in the mathematical form of an inhomogeneous system of first-order differential equations. Here we rewrite the McConnell equations in a homogeneous form in order to facilitate fast and simple numerical calculation of the solution to the equation system. The McConnell equations can only treat equilibrium chemical exchange. We therefore also present a homogeneous equation system that can handle both equilibrium and non-equilibrium chemical processes correctly, as long as the kinetics is of first-order. Finally, the same method of rewriting the inhomogeneous form of the McConnell equations into a homogeneous form is applied to a quantum mechanical treatment of a spin system in chemical exchange. In order to illustrate the homogeneous McConnell equations, we have simulated pulse sequences useful for measuring exchange rates in slow, intermediate and fast chemical exchange processes. A stopped-flow NMR experiment was simulated using the equations for non-equilibrium chemical exchange. The quantum mechanical treatment was tested by the simulation of a sensitivity enhanced 15 N-HSQC with pulsed field gradients during slow chemical exchange and by the simulation of the transfer efficiency of a two-dimensional heteronuclear cross-polarization based experiment as a function of both chemical shift difference and exchange rate constants

  14. Multishot versus single-shot pulse sequences in very high field fMRI: a comparison using retinotopic mapping.

    Directory of Open Access Journals (Sweden)

    Jascha D Swisher

    Full Text Available High-resolution functional MRI is a leading application for very high field (7 Tesla human MR imaging. Though higher field strengths promise improvements in signal-to-noise ratios (SNR and BOLD contrast relative to fMRI at 3 Tesla, these benefits may be partially offset by accompanying increases in geometric distortion and other off-resonance effects. Such effects may be especially pronounced with the single-shot EPI pulse sequences typically used for fMRI at standard field strengths. As an alternative, one might consider multishot pulse sequences, which may lead to somewhat lower temporal SNR than standard EPI, but which are also often substantially less susceptible to off-resonance effects. Here we consider retinotopic mapping of human visual cortex as a practical test case by which to compare examples of these sequence types for high-resolution fMRI at 7 Tesla. We performed polar angle retinotopic mapping at each of 3 isotropic resolutions (2.0, 1.7, and 1.1 mm using both accelerated single-shot 2D EPI and accelerated multishot 3D gradient-echo pulse sequences. We found that single-shot EPI indeed led to greater temporal SNR and contrast-to-noise ratios (CNR than the multishot sequences. However, additional distortion correction in postprocessing was required in order to fully realize these advantages, particularly at higher resolutions. The retinotopic maps produced by both sequence types were qualitatively comparable, and showed equivalent test/retest reliability. Thus, when surface-based analyses are planned, or in other circumstances where geometric distortion is of particular concern, multishot pulse sequences could provide a viable alternative to single-shot EPI.

  15. Molecular design of sequence specific DNA alkylating agents.

    Science.gov (United States)

    Minoshima, Masafumi; Bando, Toshikazu; Shinohara, Ken-ichi; Sugiyama, Hiroshi

    2009-01-01

    Sequence-specific DNA alkylating agents have great interest for novel approach to cancer chemotherapy. We designed the conjugates between pyrrole (Py)-imidazole (Im) polyamides and DNA alkylating chlorambucil moiety possessing at different positions. The sequence-specific DNA alkylation by conjugates was investigated by using high-resolution denaturing polyacrylamide gel electrophoresis (PAGE). The results showed that polyamide chlorambucil conjugates alkylate DNA at flanking adenines in recognition sequences of Py-Im polyamides, however, the reactivities and alkylation sites were influenced by the positions of conjugation. In addition, we synthesized conjugate between Py-Im polyamide and another alkylating agent, 1-(chloromethyl)-5-hydroxy-1,2-dihydro-3H-benz[e]indole (seco-CBI). DNA alkylation reactivies by both alkylating polyamides were almost comparable. In contrast, cytotoxicities against cell lines differed greatly. These comparative studies would promote development of appropriate sequence-specific DNA alkylating polyamides against specific cancer cells.

  16. Detection of Subarachnoid Hemorrhage at Acute and Subacute/Chronic Stages: Comparison of Four Magnetic Resonance Imaging Pulse Sequences and Computed Tomography

    Directory of Open Access Journals (Sweden)

    Mei-Kang Yuan

    2005-03-01

    Conclusion: FLAIR and GE T2* MRI pulse sequences, and CT scans, are all statistically significant indicators of acute SAH. GE T2*-weighted images are statistically significant indicators of subacute-to-chronic SAH, whereas other MRI pulse sequences, and CT scans, are not.

  17. antaRNA: ant colony-based RNA sequence design.

    Science.gov (United States)

    Kleinkauf, Robert; Mann, Martin; Backofen, Rolf

    2015-10-01

    RNA sequence design is studied at least as long as the classical folding problem. Although for the latter the functional fold of an RNA molecule is to be found ,: inverse folding tries to identify RNA sequences that fold into a function-specific target structure. In combination with RNA-based biotechnology and synthetic biology ,: reliable RNA sequence design becomes a crucial step to generate novel biochemical components. In this article ,: the computational tool antaRNA is presented. It is capable of compiling RNA sequences for a given structure that comply in addition with an adjustable full range objective GC-content distribution ,: specific sequence constraints and additional fuzzy structure constraints. antaRNA applies ant colony optimization meta-heuristics and its superior performance is shown on a biological datasets. http://www.bioinf.uni-freiburg.de/Software/antaRNA CONTACT: backofen@informatik.uni-freiburg.de Supplementary data are available at Bioinformatics online. © The Author 2015. Published by Oxford University Press.

  18. Design and control of integrated chromatography column sequences.

    Science.gov (United States)

    Andersson, Niklas; Löfgren, Anton; Olofsson, Marianne; Sellberg, Anton; Nilsson, Bernt; Tiainen, Peter

    2017-07-01

    To increase the productivity in biopharmaceutical production, a natural step is to introduce integrated continuous biomanufacturing which leads to fewer buffer and storage tanks, smaller sizes of integrated unit operations, and full automation of the operation. The main contribution of this work is to illustrate a methodology for design and control of a downstream process based on integrated column sequences. For small scale production, for example, pre-clinical studies, integrated column sequences can be implemented on a single chromatography system. This makes for a very efficient drug development platform. The proposed methodology is composed of four steps and is governed by a set of tools, that is presented, that makes the transition from batch separations to a complete integrated separation sequence as easy as possible. This methodology, its associated tools and the physical implementation is presented and illustrated on a case study where the target protein is separated from impurities through an integrated four column sequence. This article shows that the design and control of an integrated column sequence was successfully implemented for a tertiary protein separation problem. © 2017 American Institute of Chemical Engineers Biotechnol. Prog., 33:923-930, 2017. © 2017 American Institute of Chemical Engineers.

  19. Accident sequence analysis of human-computer interface design

    International Nuclear Information System (INIS)

    Fan, C.-F.; Chen, W.-H.

    2000-01-01

    It is important to predict potential accident sequences of human-computer interaction in a safety-critical computing system so that vulnerable points can be disclosed and removed. We address this issue by proposing a Multi-Context human-computer interaction Model along with its analysis techniques, an Augmented Fault Tree Analysis, and a Concurrent Event Tree Analysis. The proposed augmented fault tree can identify the potential weak points in software design that may induce unintended software functions or erroneous human procedures. The concurrent event tree can enumerate possible accident sequences due to these weak points

  20. Design of nuclear pulse shaped circuit based on proportional counter

    International Nuclear Information System (INIS)

    Song Qianqian; Cheng Yi; Tuo Xianguo

    2011-01-01

    Use the self-developed proportional to sample gas tritium in environment and make the measurement. For this detector, a kind of pulse shape circuit based on second order active low pass filtering circuit realized filtering and shaping nuclear pulse by high-speed operational amplifier, with less stages that has been approved for filter Gaussian wave. Use Multisim 10.0 to simulate the different parameters of the filter circuit. The simulation result was consistent with the theoretical results. The experiments proved the feasibility of this circuit, and at the same time provided a convenient and reliable method for analysis and optimization of the nuclear pulse waveform in order for discriminating by MCA. (authors)

  1. Design for a FET based 1 MHz, 10 kV pulse generator

    International Nuclear Information System (INIS)

    Barnes, M.J.; Wait, G.D.

    1995-08-01

    A pulse generator consisting of a coaxial cable and a high voltage modulator, incorporating two stacks of Field-Effect Transistor (FET) switches operating in ''push-pull'' mode, has been designed and built. The modulator generates a continuous, unipolar, pulse train at a fundamental frequency of 1 MHz and a magnitude of 10 kV. The rise and fall times of the pulses are less than 39 ns. The two stacks each utilize 14 FETS, which are individually rated at 1 kV. The design incorporates a low-loss coaxial cable on which pulses are stored. Extensive PSpice simulations have been carried out to evaluate various design options. Subsequent measurements on the prototype pulse generator confirm the PSpice predictions. This system is applicable for the kicker system at TRIUMF

  2. Versatile pulse programmer for pulsed nuclear magnetic resonance spectroscopy

    International Nuclear Information System (INIS)

    Adduci, D.J.

    1979-05-01

    A description of the sequence of events and the decisions leading to the design of a versatile pulse programmer for pulsed NMR are presented. Background and application information is discussed in order that the reader might better understand the role of the pulse programmer in a NMR spectrometer. Various other design approaches are presented as a basis for comparison. Specifications for this design are proposed, the hardware implementation of the specifications is discussed, and the software operating system is presented

  3. Versatile pulse programmer for pulsed nuclear magnetic resonance spectroscopy

    Energy Technology Data Exchange (ETDEWEB)

    Adduci, D.J.

    1979-05-01

    A description of the sequence of events and the decisions leading to the design of a versatile pulse programmer for pulsed NMR are presented. Background and application information is discussed in order that the reader might better understand the role of the pulse programmer in a NMR spectrometer. Various other design approaches are presented as a basis for comparison. Specifications for this design are proposed, the hardware implementation of the specifications is discussed, and the software operating system is presented.

  4. High Performance Systolic Array Core Architecture Design for DNA Sequencer

    Directory of Open Access Journals (Sweden)

    Saiful Nurdin Dayana

    2018-01-01

    Full Text Available This paper presents a high performance systolic array (SA core architecture design for Deoxyribonucleic Acid (DNA sequencer. The core implements the affine gap penalty score Smith-Waterman (SW algorithm. This time-consuming local alignment algorithm guarantees optimal alignment between DNA sequences, but it requires quadratic computation time when performed on standard desktop computers. The use of linear SA decreases the time complexity from quadratic to linear. In addition, with the exponential growth of DNA databases, the SA architecture is used to overcome the timing issue. In this work, the SW algorithm has been captured using Verilog Hardware Description Language (HDL and simulated using Xilinx ISIM simulator. The proposed design has been implemented in Xilinx Virtex -6 Field Programmable Gate Array (FPGA and improved in the core area by 90% reduction.

  5. Design and performance of a pulse transformer based on Fe-based nanocrystalline core.

    Science.gov (United States)

    Yi, Liu; Xibo, Feng; Lin, Fuchang

    2011-08-01

    A dry-type pulse transformer based on Fe-based nanocrystalline core with a load of 0.88 nF, output voltage of more than 65 kV, and winding ratio of 46 is designed and constructed. The dynamic characteristics of Fe-based nanocrystalline core under the impulse with the pulse width of several microseconds were studied. The pulse width and incremental flux density have an important effect on the pulse permeability, so the pulse permeability is measured under a certain pulse width and incremental flux density. The minimal volume of the toroidal pulse transformer core is determined by the coupling coefficient, the capacitors of the resonant charging circuit, incremental flux density, and pulse permeability. The factors of the charging time, ratio, and energy transmission efficiency in the resonant charging circuit based on magnetic core-type pulse transformer are analyzed. Experimental results of the pulse transformer are in good agreement with the theoretical calculation. When the primary capacitor is 3.17 μF and charge voltage is 1.8 kV, a voltage across the secondary capacitor of 0.88 nF with peak value of 68.5 kV, rise time (10%-90%) of 1.80 μs is obtained.

  6. Anomalous diffusion measured by a twice-refocused spin echo pulse sequence: analysis using fractional order calculus.

    Science.gov (United States)

    Gao, Qing; Srinivasan, Girish; Magin, Richard L; Zhou, Xiaohong Joe

    2011-05-01

    To theoretically develop and experimentally validate a formulism based on a fractional order calculus (FC) diffusion model to characterize anomalous diffusion in brain tissues measured with a twice-refocused spin-echo (TRSE) pulse sequence. The FC diffusion model is the fractional order generalization of the Bloch-Torrey equation. Using this model, an analytical expression was derived to describe the diffusion-induced signal attenuation in a TRSE pulse sequence. To experimentally validate this expression, a set of diffusion-weighted (DW) images was acquired at 3 Tesla from healthy human brains using a TRSE sequence with twelve b-values ranging from 0 to 2600 s/mm(2). For comparison, DW images were also acquired using a Stejskal-Tanner diffusion gradient in a single-shot spin-echo echo planar sequence. For both datasets, a Levenberg-Marquardt fitting algorithm was used to extract three parameters: diffusion coefficient D, fractional order derivative in space β, and a spatial parameter μ (in units of μm). Using adjusted R-squared values and standard deviations, D, β, and μ values and the goodness-of-fit in three specific regions of interest (ROIs) in white matter, gray matter, and cerebrospinal fluid, respectively, were evaluated for each of the two datasets. In addition, spatially resolved parametric maps were assessed qualitatively. The analytical expression for the TRSE sequence, derived from the FC diffusion model, accurately characterized the diffusion-induced signal loss in brain tissues at high b-values. In the selected ROIs, the goodness-of-fit and standard deviations for the TRSE dataset were comparable with the results obtained from the Stejskal-Tanner dataset, demonstrating the robustness of the FC model across multiple data acquisition strategies. Qualitatively, the D, β, and μ maps from the TRSE dataset exhibited fewer artifacts, reflecting the improved immunity to eddy currents. The diffusion-induced signal attenuation in a TRSE pulse sequence

  7. Population Genetic Structure of Listeria monocytogenes Strains as Determined by Pulsed-Field Gel Electrophoresis and Multilocus Sequence Typing

    DEFF Research Database (Denmark)

    Henri, Clémentine; Félix, Benjamin; Guillier, Laurent

    2016-01-01

    on the basis of different pulsed-field gel electrophoresis (PFGE) clusters, serotypes, and strain origins and typed by multilocus sequence typing (MLST), and the MLST results were supplemented with MLST data available from Institut Pasteur, representing human and additional food strains from France....... The distribution of sequence types (STs) was compared between food and clinical strains on a panel of 675 strains. High congruence between PFGE and MLST was found. Out of 73 PFGE clusters, the two most prevalent corresponded to ST9 and ST121. Using original statistical analysis, we demonstrated that (i...

  8. {sup 1}H HR-MAS NMR and S180 cells: metabolite assignment and evaluation of pulse sequence

    Energy Technology Data Exchange (ETDEWEB)

    Oliveira, Aline L. de; Martinelli, Bruno César B.; Lião, Luciano M. [Universidade Federal de Goiás (UFG), Goiânia, GO (Brazil). Instituto de Química. Lab. de RMN; Pereira, Flávia C.; Silveira-Lacerda, Elisangela P. [Universidade Federal de Goiás (UFG), Goiânia, GO (Brazil). Instituto de Ciências Biológicas. Laboratório Genética Molecular e Citogenética; Alcantara, Glaucia B., E-mail: glaucia.alcantara@ufms.br [Universidade Federal de Mato Grosso do Sul (UFMS), Campo Grande, MS (Brazil). Inst. de Química

    2014-07-01

    High resolution magic angle spinning {sup 1}H nuclear magnetic resonance spectroscopy (HR-MAS NMR) is a useful technique for evaluation of intact cells and tissues. However, optimal NMR parameters are crucial in obtaining reliable results. To identify the key steps for the optimization of HR-MAS NMR parameters, we assessed different pulse sequences and NMR parameters using sarcoma 180 (S180) cells. A complete assignment of the metabolites of S180 is given to assist future studies. (author)

  9. 1H HR-MAS NMR and S180 cells: metabolite assignment and evaluation of pulse sequence

    International Nuclear Information System (INIS)

    Oliveira, Aline L. de; Martinelli, Bruno César B.; Lião, Luciano M.; Pereira, Flávia C.; Silveira-Lacerda, Elisangela P.; Alcantara, Glaucia B.

    2014-01-01

    High resolution magic angle spinning 1 H nuclear magnetic resonance spectroscopy (HR-MAS NMR) is a useful technique for evaluation of intact cells and tissues. However, optimal NMR parameters are crucial in obtaining reliable results. To identify the key steps for the optimization of HR-MAS NMR parameters, we assessed different pulse sequences and NMR parameters using sarcoma 180 (S180) cells. A complete assignment of the metabolites of S180 is given to assist future studies. (author)

  10. Detection of hepatic VX2 carcinomas with ferucarbotran-enhanced magnetic resonance imaging in rabbits: Comparison of nine pulse sequences

    International Nuclear Information System (INIS)

    Kim, Seong Hyun; Choi, Dongil; Lim, Hyo K.; Kim, Min Ju; Jang, Kyung Mi; Kim, Seung Hoon; Lee, Won Jae; Lee, Jongmee; Jeon, Yong Hwan; Lim, Jae Hoon

    2006-01-01

    Objective: To compare the diagnostic performance of a variety of magnetic resonance imaging (MRI) sequences, in order to identify the most effective ferucarbotran-enhanced sequence for the detection of multiple small hepatic VX2 carcinomas in rabbits. Methods: Fifteen rabbits with experimentally induced 135 VX2 carcinomas in the liver underwent ferucarbotran-enhanced MRI using the following nine pulse sequences: a fat-suppressed fast spin-echo (FSE) sequence with two echo times (TE) (proton density- and T2-weighted images), four different T2*-weighted fast multiplanar GRASS (gradient-recalled acquisition in the steady state) (FMPGR) with the combination of three TEs (9, 12, 15 ms, respectively) and two flip angles (20 deg., 80 deg., respectively), T2*-weighted fast multiplanar spoiled GRASS (FMPSPGR), T1-weighted FMPSPGR, and dynamic T1-weighted FMPSPGR. All images were reviewed by three radiologists with quantitative and qualitative analysis. Results: Tumor-to-liver contrast-to-noise ratio of the proton density-weighted FSE sequence was significantly higher than those of the others (p o ) images were superior to those of the others and for the detection of very small hepatic tumors of less than 5 mm, the sensitivities of these sequences were less than 30%. Conclusion: Ferucarbotran-enhanced T2- and proton density-weighted FSE and T2*-weighed FMPGR (TE/flip angle, 12/20 o ) images were found to be the most effective pulse sequences for the detection of multiple small hepatic VX2 carcinomas but these sequences were limited in the detection of very small hepatic tumors of less than 5 mm in size

  11. Design of the coolant system for the Large Coil Test Facility pulse coils

    International Nuclear Information System (INIS)

    Bridgman, C.; Ryan, T.L.

    1983-01-01

    The pulse coils will be a part of the Large Coil Test Facility in Oak Ridge, Tennessee, which is designed to test six large tokamak-type superconducting coils. The pulse coil set consists of two resistive coaxial solenoid coils, mounted so that their magnetic axis is perpendicular to the toroidal field lines of the test coil. The pulse coils provide transient vertical fields at test coil locations to simulate the pulsed vertical fields present in tokamak devices. The pulse coils are designed to be pulsed for 30 s every 150 s, which results in a Joule heating of 116 kW per coil. In order to provide this capability, the pulse coil coolant system is required to deliver 6.3 L/s (100 gpm) of subcooled liquid nitrogen at 10-atm absolute pressure. The coolant system can also cool down each pulse coil from room temperature to liquid nitrogen temperature. This paper provides details of the pumping and heat exchange equipment designed for the coolant system and of the associated instrumentation and controls

  12. Advances in pulsed-power-driven radiography system design

    International Nuclear Information System (INIS)

    Portillo, Salvador; Hinshelwood, David D.; Rovang, Dean Curtis; Cordova, Steve Ray; Oliver, Bryan Velten; Weber, Bruce V.; Welch, Dale Robert; Shelton, Bradley Allen; Sceiford, Matthew E.; Cooperstein, Gerald; Gignac, Raymond Edward; Puetz, Elizabeth A.; Rose, David Vincent; Barker, Dennis L.; Van De Valde, David M.; Droemer, Darryl W.; Wilkins, Frank Lee; Molina, Isidro; Jaramillo, Deanna M.; Swanekamp, Stephen Brian; Commisso, Robert J.; Bailey, Vernon Leslie; Maenchen, John Eric; Johnson, David Lee; Griffin, Fawn A.; Hahn, Kelly Denise; Smith, Ian

    2004-01-01

    Flash x-ray radiography has undergone a transformation in recent years with the resurgence of interest in compact, high intensity pulsed-power-driven electron beam sources. The radiographic requirements and the choice of a consistent x-ray source determine the accelerator parameters, which can be met by demonstrated Induction Voltage Adder technologies. This paper reviews the state of the art and the recent advances which have improved performance by over an order of magnitude in beam brightness and radiographic utility.

  13. RNAblueprint: flexible multiple target nucleic acid sequence design.

    Science.gov (United States)

    Hammer, Stefan; Tschiatschek, Birgit; Flamm, Christoph; Hofacker, Ivo L; Findeiß, Sven

    2017-09-15

    Realizing the value of synthetic biology in biotechnology and medicine requires the design of molecules with specialized functions. Due to its close structure to function relationship, and the availability of good structure prediction methods and energy models, RNA is perfectly suited to be synthetically engineered with predefined properties. However, currently available RNA design tools cannot be easily adapted to accommodate new design specifications. Furthermore, complicated sampling and optimization methods are often developed to suit a specific RNA design goal, adding to their inflexibility. We developed a C ++  library implementing a graph coloring approach to stochastically sample sequences compatible with structural and sequence constraints from the typically very large solution space. The approach allows to specify and explore the solution space in a well defined way. Our library also guarantees uniform sampling, which makes optimization runs performant by not only avoiding re-evaluation of already found solutions, but also by raising the probability of finding better solutions for long optimization runs. We show that our software can be combined with any other software package to allow diverse RNA design applications. Scripting interfaces allow the easy adaption of existing code to accommodate new scenarios, making the whole design process very flexible. We implemented example design approaches written in Python to demonstrate these advantages. RNAblueprint , Python implementations and benchmark datasets are available at github: https://github.com/ViennaRNA . s.hammer@univie.ac.at, ivo@tbi.univie.ac.at or sven@tbi.univie.ac.at. Supplementary data are available at Bioinformatics online. © The Author(s) 2017. Published by Oxford University Press.

  14. The Optimization of Magnetic Resonance Imaging Pulse Sequences in Order to Better Detection of Multiple Sclerosis Plaques.

    Science.gov (United States)

    Farshidfar, Z; Faeghi, F; Haghighatkhah, H R; Abdolmohammadi, J

    2017-09-01

    Magnetic resonance imaging (MRI) is the most sensitive technique to detect multiple sclerosis (MS) plaques in central nervous system. In some cases, the patients who were suspected to MS, Whereas MRI images are normal, but whether patients don't have MS plaques or MRI images are not enough optimized enough in order to show MS plaques? The aim of the current study is evaluating the efficiency of different MRI sequences in order to better detection of MS plaques. In this cross-sectional study which was performed at Shohada-E Tajrish in Tehran - Iran hospital between October, 2011 to April, 2012, included 20 patients who suspected to MS disease were selected by the method of random sampling and underwent routine brain Pulse sequences (Axial T2w, Axial T1w, Coronal T2w, Sagittal T1w, Axial FLAIR) by Siemens, Avanto, 1.5 Tesla system. If any lesion which is suspected to the MS disease was observed, additional sequences such as: Sagittal FLAIR Fat Sat, Sagittal PDw-fat Sat, Sagittal PDw-water sat was also performed. This study was performed in about 52 lesions and the results in more than 19 lesions showed that, for the Subcortical and Infratentorial areas, PDWw sequence with fat suppression is the best choice, And in nearly 33 plaques located in Periventricular area, FLAIR Fat Sat was the most effective sequence than both PDw fat and water suppression pulse sequences. Although large plaques may visible in all images, but important problem in patients with suspected MS is screening the tiny MS plaques. This study showed that for revealing the MS plaques located in the Subcortical and Infratentorial areas, PDw-fat sat is the most effective sequence, and for MS plaques in the periventricular area, FLAIR fat Sat is the best choice.

  15. MR imaging of the knee: Improvement of signal and contrast efficiency of T1-weighted turbo spin echo sequences by applying a driven equilibrium (DRIVE) pulse

    Energy Technology Data Exchange (ETDEWEB)

    Radlbauer, Rudolf, E-mail: rudolf.radlbauer@stpoelten.lknoe.a [MR Physics Group, Department of Radiology, Landesklinikum St. Poelten, Propst Fuehrer Strasse 4, 3100 St. Poelten (Austria); Lomoschitz, Friedrich, E-mail: friedrich.lomoschitz@stpoelten.lknoe.a [MR Physics Group, Department of Radiology, Landesklinikum St. Poelten, Propst Fuehrer Strasse 4, 3100 St. Poelten (Austria); Salomonowitz, Erich, E-mail: erich.salomonowitz@stpoelten.lknoe.a [MR Physics Group, Department of Radiology, Landesklinikum St. Poelten, Propst Fuehrer Strasse 4, 3100 St. Poelten (Austria); Eberhardt, Knut E., E-mail: info@mrt-kompetenzzentrum.d [MRT Competence Center Schloss Werneck, Balthasar-Neumann-Platz 2, 97440 Werneck (Germany); Stadlbauer, Andreas, E-mail: andi@nmr.a [MR Physics Group, Department of Radiology, Landesklinikum St. Poelten, Propst Fuehrer Strasse 4, 3100 St. Poelten (Austria); Department of Neurosurgery, University of Erlangen-Nuremberg, Schwabachanlage 6, 91054 Erlangen (Germany)

    2010-08-15

    The purpose of this study was to assess the effect of a driven equilibrium (DRIVE) pulse incorporated in a standard T1-weighted turbo spin echo (TSE) sequence as used in our routine MRI protocol for examination of pathologies of the knee. Sixteen consecutive patients with knee disorders were examined using the routine MRI protocol, including T1-weighted TSE-sequences with and without a DRIVE pulse. Signal-to-noise ratios (SNRs) and contrast-to-noise ratio (CNR) of anatomical structures and pathologies were calculated and compared for both sequences. The differences in diagnostic value of the T1-weighted images with and without DRIVE pulse were assessed. SNR was significantly higher on images acquired with DRIVE pulse for fluid, effusion, cartilage and bone. Differences in the SNR of meniscus and muscle between the two sequences were not statistically significant. CNR was significantly increased between muscle and effusion, fluid and cartilage, fluid and meniscus, cartilage and meniscus, bone and cartilage on images acquired using the DRIVE pulse. Diagnostic value of the T1-weighted images was found to be improved for delineation of anatomic structures and for diagnosing a variety of pathologies when a DRIVE pulse is incorporated in the sequence. Incorporation of a DRIVE pulse into a standard T1-weighted TSE-sequence leads to significant increase of SNR and CNR of both, anatomical structures and pathologies, and consequently to an increase in diagnostic value within the same acquisition time.

  16. MR imaging of the knee: Improvement of signal and contrast efficiency of T1-weighted turbo spin echo sequences by applying a driven equilibrium (DRIVE) pulse

    International Nuclear Information System (INIS)

    Radlbauer, Rudolf; Lomoschitz, Friedrich; Salomonowitz, Erich; Eberhardt, Knut E.; Stadlbauer, Andreas

    2010-01-01

    The purpose of this study was to assess the effect of a driven equilibrium (DRIVE) pulse incorporated in a standard T1-weighted turbo spin echo (TSE) sequence as used in our routine MRI protocol for examination of pathologies of the knee. Sixteen consecutive patients with knee disorders were examined using the routine MRI protocol, including T1-weighted TSE-sequences with and without a DRIVE pulse. Signal-to-noise ratios (SNRs) and contrast-to-noise ratio (CNR) of anatomical structures and pathologies were calculated and compared for both sequences. The differences in diagnostic value of the T1-weighted images with and without DRIVE pulse were assessed. SNR was significantly higher on images acquired with DRIVE pulse for fluid, effusion, cartilage and bone. Differences in the SNR of meniscus and muscle between the two sequences were not statistically significant. CNR was significantly increased between muscle and effusion, fluid and cartilage, fluid and meniscus, cartilage and meniscus, bone and cartilage on images acquired using the DRIVE pulse. Diagnostic value of the T1-weighted images was found to be improved for delineation of anatomic structures and for diagnosing a variety of pathologies when a DRIVE pulse is incorporated in the sequence. Incorporation of a DRIVE pulse into a standard T1-weighted TSE-sequence leads to significant increase of SNR and CNR of both, anatomical structures and pathologies, and consequently to an increase in diagnostic value within the same acquisition time.

  17. Myocardial tagging by Cardiovascular Magnetic Resonance: evolution of techniques--pulse sequences, analysis algorithms, and applications

    Directory of Open Access Journals (Sweden)

    Ibrahim El-Sayed H

    2011-07-01

    Full Text Available Abstract Cardiovascular magnetic resonance (CMR tagging has been established as an essential technique for measuring regional myocardial function. It allows quantification of local intramyocardial motion measures, e.g. strain and strain rate. The invention of CMR tagging came in the late eighties, where the technique allowed for the first time for visualizing transmural myocardial movement without having to implant physical markers. This new idea opened the door for a series of developments and improvements that continue up to the present time. Different tagging techniques are currently available that are more extensive, improved, and sophisticated than they were twenty years ago. Each of these techniques has different versions for improved resolution, signal-to-noise ratio (SNR, scan time, anatomical coverage, three-dimensional capability, and image quality. The tagging techniques covered in this article can be broadly divided into two main categories: 1 Basic techniques, which include magnetization saturation, spatial modulation of magnetization (SPAMM, delay alternating with nutations for tailored excitation (DANTE, and complementary SPAMM (CSPAMM; and 2 Advanced techniques, which include harmonic phase (HARP, displacement encoding with stimulated echoes (DENSE, and strain encoding (SENC. Although most of these techniques were developed by separate groups and evolved from different backgrounds, they are in fact closely related to each other, and they can be interpreted from more than one perspective. Some of these techniques even followed parallel paths of developments, as illustrated in the article. As each technique has its own advantages, some efforts have been made to combine different techniques together for improved image quality or composite information acquisition. In this review, different developments in pulse sequences and related image processing techniques are described along with the necessities that led to their invention

  18. Laser-plasma acceleration with multi-color pulse stacks: Designer electron beams for advanced radiation sources

    Science.gov (United States)

    Kalmykov, Serge; Shadwick, Bradley; Ghebregziabher, Isaac; Davoine, Xavier

    2015-11-01

    Photon engineering offers new avenues to coherently control electron beam phase space on a femtosecond time scale. It enables generation of high-quality beams at a kHz-scale repetition rate. Reducing the peak pulse power (and thus the average laser power) is the key to effectively exercise such control. A stepwise negative chirp, synthesized by incoherently stacking collinear sub-Joule pulses from conventional CPA, affords a micron-scale bandwidth. It is sufficient to prevent rapid compression of the pulse into an optical shock, while delaying electron dephasing. This extends electron energy far beyond the limits suggested by accepted scalings (beyond 1 GeV in a 3 mm plasma), without compromising beam quality. In addition, acceleration with a stacked pulse in a channel favorably modifies electron beam on a femtosecond time scale, controllably producing synchronized sequences of 100 kA-scale, quasi-monoenergetic bunches. These comb-like, designer GeV electron beams are ideal drivers of polychromatic, tunable inverse Thomson γ-ray sources. The work of SYK and BAS is supported by the US DOE Grant DE-SC0008382 and NSF Grant PHY-1104683. Inverse Thomson scattering simulations were completed utilizing the Holland Computing Center of the University of Nebraska.

  19. PET Imaging Stability Measurements During Simultaneous Pulsing of Aggressive MR Sequences on the SIGNA PET/MR System.

    Science.gov (United States)

    Deller, Timothy W; Khalighi, Mohammad Mehdi; Jansen, Floris P; Glover, Gary H

    2018-01-01

    The recent introduction of simultaneous whole-body PET/MR scanners has enabled new research taking advantage of the complementary information obtainable with PET and MRI. One such application is kinetic modeling, which requires high levels of PET quantitative stability. To accomplish the required PET stability levels, the PET subsystem must be sufficiently isolated from the effects of MR activity. Performance measurements have previously been published, demonstrating sufficient PET stability in the presence of MR pulsing for typical clinical use; however, PET stability during radiofrequency (RF)-intensive and gradient-intensive sequences has not previously been evaluated for a clinical whole-body scanner. In this work, PET stability of the GE SIGNA PET/MR was examined during simultaneous scanning of aggressive MR pulse sequences. Methods: PET performance tests were acquired with MR idle and during simultaneous MR pulsing. Recent system improvements mitigating RF interference and gain variation were used. A fast recovery fast spin echo MR sequence was selected for high RF power, and an echo planar imaging sequence was selected for its high heat-inducing gradients. Measurements were performed to determine PET stability under varying MR conditions using the following metrics: sensitivity, scatter fraction, contrast recovery, uniformity, count rate performance, and image quantitation. A final PET quantitative stability assessment for simultaneous PET scanning during functional MRI studies was performed with a spiral in-and-out gradient echo sequence. Results: Quantitation stability of a 68 Ge flood phantom was demonstrated within 0.34%. Normalized sensitivity was stable during simultaneous scanning within 0.3%. Scatter fraction measured with a 68 Ge line source in the scatter phantom was stable within the range of 40.4%-40.6%. Contrast recovery and uniformity were comparable for PET images acquired simultaneously with multiple MR conditions. Peak noise equivalent count

  20. Comparison of MRI pulse sequences in defining prostate volume after permanent implantation

    International Nuclear Information System (INIS)

    McLaughlin, P.W.; Narayana, V.; Drake, D.G.; Miller, B.M.; Marsh, L.; Chan, J.; Gonda, R.; Winfield, R.J.; Roberson, P.L.

    2002-01-01

    Purpose: To determine the relative value of three MRI pulse sequences in defining the prostate volume after permanent implantation. Methods and Materials: A total of 45 patients who received a permanent 125 I implant were studied. Two weeks after implantation, an axial CT scan (2 mm thickness) and T 1 -weighted, T 1 -weighted fat saturation, and T 2 -weighted axial MRI (3-mm) studies were obtained. The prostate volumes were compared with the initial ultrasound planning volumes, and subsequently the CT, T 1 -weighted, and T 1 -weighted fat saturation MRI volumes were compared with the T 2 -weighted volumes. Discrepancies in volume were evaluated by visual inspection of the registered axial images and the registration of axial volumes on the sagittal T 2 -weighted volumes. In a limited set of patients, pre- and postimplant CT and T 2 -weighted MRI studies were available for comparison to determine whether prostate volume changes after implant were dependent on the imaging modality. Results: T 1 -weighted and T 1 -weighted fat saturation MRI and CT prostate volumes were consistently larger than the T 2 -weighted MRI prostate volumes, with a volume on average 1.33 (SD 0.24) times the T 2 -weighted volume. This discrepancy was due to the superiority of T 2 -weighted MRI for prostate definition at the following critical interfaces: membranous urethra, apex, and anterior base-bladder and posterior base-seminal vesicle interfaces. The differences in prostate definition in the anterior base region suggest that the commonly reported underdose may be due to overestimation of the prostate in this region by CT. The consistent difference in volumes suggests that the degree of swelling observed after implantation is in part a function of the imaging modality. In patients with pre- and postimplant CT and T 2 -weighted MRI images, swelling on the T 2 -weighted images was 1.1 times baseline and on CT was 1.3 times baseline, confirming the imaging modality dependence of prostate

  1. Recent Pulse Sequences for Heteronuclear Long-Range Correlation and More

    DEFF Research Database (Denmark)

    Sørensen, Ole W.

    This talk will give an overview of the key elements and principles of experiments listed on http://www.crc.dk/nmr/, from where also pulse programs in Bruker and Varian format can be downloaded.......This talk will give an overview of the key elements and principles of experiments listed on http://www.crc.dk/nmr/, from where also pulse programs in Bruker and Varian format can be downloaded....

  2. Efficient method to design RF pulses for parallel excitation MRI using gridding and conjugate gradient.

    Science.gov (United States)

    Feng, Shuo; Ji, Jim

    2014-04-01

    Parallel excitation (pTx) techniques with multiple transmit channels have been widely used in high field MRI imaging to shorten the RF pulse duration and/or reduce the specific absorption rate (SAR). However, the efficiency of pulse design still needs substantial improvement for practical real-time applications. In this paper, we present a detailed description of a fast pulse design method with Fourier domain gridding and a conjugate gradient method. Simulation results of the proposed method show that the proposed method can design pTx pulses at an efficiency 10 times higher than that of the conventional conjugate-gradient based method, without reducing the accuracy of the desirable excitation patterns.

  3. Modelling and control design for SHARON/Anammox reactor sequence

    DEFF Research Database (Denmark)

    Valverde Perez, Borja; Mauricio Iglesias, Miguel; Sin, Gürkan

    2012-01-01

    metabolism against fast chemical reaction and mass transfer. Likewise, the analysis of the dynamics contributed to establish qualitatively the requirements for control of the reactors, both for regulation and for optimal operation. Work in progress on quantitatively analysing different control structure......With the perspective of investigating a suitable control design for autotrophic nitrogen removal, this work presents a complete model of the SHARON/Anammox reactor sequence. The dynamics of the reactor were explored pointing out the different scales of the rates in the system: slow microbial...

  4. Basic evaluation of the new pulse sequence for simultaneous acquisition of T1- and T2-weighted images

    International Nuclear Information System (INIS)

    Kurose, Atsunari; Takahashi, Tohru; Ohishi, Tae; Ishikawa, Akihiro

    2006-01-01

    A novel pulse sequence that enables simultaneous acquisition of T1-weighted (T1W) and T2-weighted (T2W) images is presented. In this new technique, the inversion recovery (IR) pulse of conventional fast inversion recovery (Fast IR) is replaced with a pulse train that consists of a fast spin echo (FSE) and 180(y)+90(x) for driven inversion (DI). By using a shorter T1 and independent k-space ordering, the first part of the sequence provides T2W images and the second part provides T1W images, thereby enabling simultaneous acquisition in a single scan time comparable to that of Fast IR. Signal simulation also was conducted, and this was compared with conventional scanning techniques using normal volunteers. In the human studies, both T1W and T2W images showed the same image quality as conventional images, suggesting the potential for this technique to replace the combination of Fast IR and T2W FSE for scan-time reduction. (author)

  5. Manipulating femtosecond spin-orbit torques with laser pulse sequences to control magnetic memory states and ringing

    Science.gov (United States)

    Lingos, P. C.; Wang, J.; Perakis, I. E.

    2015-05-01

    Femtosecond (fs) coherent control of collective order parameters is important for nonequilibrium phase dynamics in correlated materials. Here, we propose such control of ferromagnetic order based on using nonadiabatic optical manipulation of electron-hole (e -h ) photoexcitations to create fs carrier-spin pulses with controllable direction and time profile. These spin pulses are generated due to the time-reversal symmetry breaking arising from nonperturbative spin-orbit and magnetic exchange couplings of coherent photocarriers. By tuning the nonthermal populations of exchange-split, spin-orbit-coupled semiconductor band states, we can excite fs spin-orbit torques that control complex magnetization pathways between multiple magnetic memory states. We calculate the laser-induced fs magnetic anisotropy in the time domain by using density matrix equations of motion rather than the quasiequilibrium free energy. By comparing to pump-probe experiments, we identify a "sudden" out-of-plane magnetization canting displaying fs magnetic hysteresis, which agrees with switchings measured by the static Hall magnetoresistivity. This fs transverse spin-canting switches direction with magnetic state and laser frequency, which distinguishes it from the longitudinal nonlinear optical and demagnetization effects. We propose that sequences of clockwise or counterclockwise fs spin-orbit torques, photoexcited by shaping two-color laser-pulse sequences analogous to multidimensional nuclear magnetic resonance (NMR) spectroscopy, can be used to timely suppress or enhance magnetic ringing and switching rotation in magnetic memories.

  6. Suppression of Protonated Organic Solvents in NMR Spectroscopy Using a Perfect Echo Low-Pass Filtration Pulse Sequence.

    Science.gov (United States)

    Howe, Peter W A

    2018-04-03

    Proton NMR spectra are usually acquired using deuterated solvents, but in many cases it is necessary to obtain spectra on samples in protonated solvents. In these cases, the intense resonances of the protonated solvents need to be suppressed to maximize sensitivity and spectral quality. A wide range of highly effective solvent suppression methods have been developed, but additional measures are needed to suppress the 13 C satellites of the solvent. Because the satellites represent 1.1% of the original solvent signal, they remain problematic if unsuppressed. The recently proposed DISPEL pulse sequences suppress 13 C satellites extremely effectively, and this Technical Note demonstrates that combining DISPEL and presaturation results in exceptionally effective solvent suppression. An important element in the effectiveness is volume selection, which is inherent within the DISPEL sequence. Spectra acquired in protonated dimethlysulfoxide and tetrahydrofuran show that optimum results are obtained by modifying the phase cycle, cycling the pulse-field gradients, and using broadband 13 C inversion pulses to reduce the effects of radiofrequency offset and inhomogeneity.

  7. Hybrid Design Optimization of High Voltage Pulse Transformers for Klystron Modulators

    CERN Document Server

    Sylvain, Candolfi; Davide, Aguglia; Jerome, Cros

    2015-01-01

    This paper presents a hybrid optimization methodology for the design of high voltage pulse transformers used in klystron modulators. The optimization process is using simplified 2D FEA design models of the 3D transformer structure. Each intermediate optimal solution is evaluated by 3D FEA and correction coefficients of the 2D FEA models are derived. A new optimization process using 2D FEA models is then performed. The convergence of this hybrid optimal design methodology is obtained with a limited number of time consuming 3D FEA simulations. The method is applied to the optimal design of a monolithic high voltage pulse transformer for the CLIC klystron modulator.

  8. Lung MRI at 1.5 and 3 Tesla: observer preference study and lesion contrast using five different pulse sequences.

    Science.gov (United States)

    Fink, Christian; Puderbach, Michael; Biederer, Juergen; Fabel, Michael; Dietrich, Olaf; Kauczor, Hans-Ulrich; Reiser, Maximilian F; Schönberg, Stefan O

    2007-06-01

    To compare the image quality and lesion contrast of lung MRI using 5 different pulse sequences at 1.5 T and 3 T. Lung MRI was performed at 1.5 T and 3 T using 5 pulse sequences which have been previously proposed for lung MRI: 3D volumetric interpolated breath-hold examination (VIBE), true fast imaging with steady-state precession (TrueFISP), half-Fourier single-shot turbo spin-echo (HASTE), short tau inversion recovery (STIR), T2-weighted turbo spin-echo (TSE). In addition to 4 healthy volunteers, 5 porcine lungs were examined in a dedicated chest phantom. Lung pathology (nodules and infiltrates) was simulated in the phantom by intrapulmonary and intrabronchial injections of agarose. CT was performed in the phantom for correlation. Image quality of the sequences was ranked in a side-by-side comparison by 3 blinded radiologists regarding the delineation of pulmonary and mediastinal anatomy, conspicuity of pulmonary nodules and infiltrates, and presence of artifacts. The contrast of nodules and infiltrates (CNODULES and CINFILTRATES) defined by the ratio of the signal intensities of the lesion and adjacent normal lung parenchyma was determined. There were no relevant differences regarding the preference for the individual sequences between both field strengths. TSE was the preferred sequence for the visualization of the mediastinum at both field strengths. For the visualization of lung parenchyma the observers preferred TrueFISP in volunteers and TSE in the phantom studies. At both field strengths VIBE achieved the best rating for the depiction of nodules, whereas HASTE was rated best for the delineation of infiltrates. TrueFISP had the fewest artifacts in volunteers, whereas STIR showed the fewest artifacts in the phantom. For all but the TrueFISP sequence the lesion contrast increased from 1.5 T to 3 T. At both field strengths VIBE showed the highest CNODULES (6.6 and 7.1) and HASTE the highest CINFILTRATES (6.1 and 6.3). The imaging characteristics of different

  9. Recoupling and decoupling of nuclear spin interactions at high MAS frequencies: numerical design of CNnν symmetry-based RF pulse schemes

    International Nuclear Information System (INIS)

    Herbst, Christian; Herbst, Jirada; Kirschstein, Anika; Leppert, Joerg; Ohlenschlaeger, Oliver; Goerlach, Matthias; Ramachandran, Ramadurai

    2009-01-01

    The CN n ν class of RF pulse schemes, commonly employed for recoupling and decoupling of nuclear spin interactions in magic angle spinning solid state NMR studies of biological systems, involves the application of a basic 'C' element corresponding to an RF cycle with unity propagator. In this study, the design of CN n ν symmetry-based RF pulse sequences for achieving 13 C- 13 C double-quantum dipolar recoupling and through bond scalar coupling mediated 13 C- 13 C chemical shift correlation has been examined at high MAS frequencies employing broadband, constant-amplitude, phase-modulated basic 'C' elements. The basic elements were implemented as a sandwich of a small number of short pulses of equal duration with each pulse characterised by an RF phase value. The phase-modulation profile of the 'C' element was optimised numerically so as to generate efficient RF pulse sequences. The performances of the sequences were evaluated via numerical simulations and experimental measurements and are presented here

  10. Electric field induced needle-pulsed arc discharge carbon nanotube production apparatus: Circuitry and mechanical design

    Energy Technology Data Exchange (ETDEWEB)

    Kia, Kaveh Kazemi [Department of Electrical and Computer Engineering, Islamic Azad University of Bonab, Bonab (Iran, Islamic Republic of); Bonabi, Fahimeh [Department of Engineering, Islamic Azad University of Bonab, Bonab (Iran, Islamic Republic of)

    2012-12-15

    A simple and low cost apparatus is reported to produce multiwall carbon nanotubes and carbon nano-onions by a low power short pulsed arc discharge reactor. The electric circuitry and the mechanical design details and a micro-filtering assembly are described. The pulsed-plasma is generated and applied between two graphite electrodes. The pulse width is 0.3 {mu}s. A strong dc electric field is established along side the electrodes. The repetitive discharges occur in less than 1 mm distance between a sharp tip graphite rod as anode, and a tubular graphite as cathode. A hydrocarbon vapor, as carbon source, is introduced through the graphite nozzle in the cathode assembly. The pressure of the chamber is controlled by a vacuum pump. A magnetic field, perpendicular to the plasma path, is provided. The results show that the synergetic use of a pulsed-current and a dc power supply enables us to synthesize carbon nanoparticles with short pulsed plasma. The simplicity and inexpensiveness of this plan is noticeable. Pulsed nature of plasma provides some extra degrees of freedom that make the production more controllable. Effects of some design parameters such as electric field, pulse frequency, and cathode shape are discussed. The products are examined using scanning probe microscopy techniques.

  11. Electric field induced needle-pulsed arc discharge carbon nanotube production apparatus: circuitry and mechanical design.

    Science.gov (United States)

    Kia, Kaveh Kazemi; Bonabi, Fahimeh

    2012-12-01

    A simple and low cost apparatus is reported to produce multiwall carbon nanotubes and carbon nano-onions by a low power short pulsed arc discharge reactor. The electric circuitry and the mechanical design details and a micro-filtering assembly are described. The pulsed-plasma is generated and applied between two graphite electrodes. The pulse width is 0.3 μs. A strong dc electric field is established along side the electrodes. The repetitive discharges occur in less than 1 mm distance between a sharp tip graphite rod as anode, and a tubular graphite as cathode. A hydrocarbon vapor, as carbon source, is introduced through the graphite nozzle in the cathode assembly. The pressure of the chamber is controlled by a vacuum pump. A magnetic field, perpendicular to the plasma path, is provided. The results show that the synergetic use of a pulsed-current and a dc power supply enables us to synthesize carbon nanoparticles with short pulsed plasma. The simplicity and inexpensiveness of this plan is noticeable. Pulsed nature of plasma provides some extra degrees of freedom that make the production more controllable. Effects of some design parameters such as electric field, pulse frequency, and cathode shape are discussed. The products are examined using scanning probe microscopy techniques.

  12. Design and test of the Stirling-type pulse tube cryocooler

    Science.gov (United States)

    Hong, Yong-Ju; Ko, Junseok; Kim, Hyo-Bong; Yeom, Han-Kil; In, Sehwan; Park, Seong-Je

    2017-12-01

    Stirling type pulse tube cryocoolers are very attractive for cooling of diverse application because it has it has several inherent advantages such as no moving part in the cold end, low manufacturing cost and long operation life. To develop the Stirling-type pulse tube cryocooler, we need to design a linear compressor to drive the pulse tube cryocooler. A moving magnet type linear motor of dual piston configuration is designed and fabricated, and this compressor could be operated with the electric power of 100 W and the frequency up to 60 Hz. A single stage coaxial type pulse tube cold finger aiming at over 1.5 W at 80K is built and tested with the linear compressor. Experimental investigations have been conducted to evaluate their performance characteristics with respect to several parameters such as the phase shifter, the charging pressure and the operating frequency of the linear compressor.

  13. Design of an efficient pulsing system for a slow-positron beam

    Energy Technology Data Exchange (ETDEWEB)

    Oshima, Nagayasu; Suzuki, Takenori [National Lab. for High Energy Physics, Tsukuba, Ibaraki (Japan); Kanazawa, Ikuzo; Ito, Yasuo

    1996-07-01

    In this paper, a new design of a pulsed slow positron system for PALS measurement is reported. By using this new system, it will be possible to obtain a short-pulsed slow-positron beam with high efficiency ({>=}50%) and a relatively low minimum energy ({approx}200 eV). This system is also easy to construct on the laboratory scale. (J.P.N.)

  14. The design of programme-controlled gain and linear pulse amplifier

    International Nuclear Information System (INIS)

    Guan Xuemei; Chen Chunkai; Northeast Normal Univ., Changchun; Qiao Shuang; Zhou Chuansheng

    2006-01-01

    The authors have designed a kind of new-style programme-controlled gain and linear pulse amplifier with accurate gausses of CR-RC-CR shaping circuit structure. The use of non-volatile digital electric potential device and accurate operational amplifier makes the circuit structure simple greatly, makes the ability stronger that resists assault. It can realize multistage gain in succession and make the drift of temperature low and make the linearity of pulse well. (authors)

  15. Proposal and design of phase-modulated fiber gratings in transmission for pulse shaping.

    Science.gov (United States)

    Preciado, Miguel A; Shu, Xuewen; Sugden, Kate

    2013-01-01

    An approach to pulse shaping using a phase-modulated fiber Bragg grating (FBG) in transmission is proposed and designed. We show that phase-modulated FBGs can provide transmission responses suitable for pulse shaping applications, offering important technological feasibility benefits, since the coupling strength remains basically uniform in the grating. Moreover, this approach retains the substantial advantages of FBGs in transmission, such as optimum energy efficiency, no requirement for an optical circulator, and robustness against fabrication errors.

  16. Design of Protein Multi-specificity Using an Independent Sequence Search Reduces the Barrier to Low Energy Sequences.

    Directory of Open Access Journals (Sweden)

    Alexander M Sevy

    2015-07-01

    Full Text Available Computational protein design has found great success in engineering proteins for thermodynamic stability, binding specificity, or enzymatic activity in a 'single state' design (SSD paradigm. Multi-specificity design (MSD, on the other hand, involves considering the stability of multiple protein states simultaneously. We have developed a novel MSD algorithm, which we refer to as REstrained CONvergence in multi-specificity design (RECON. The algorithm allows each state to adopt its own sequence throughout the design process rather than enforcing a single sequence on all states. Convergence to a single sequence is encouraged through an incrementally increasing convergence restraint for corresponding positions. Compared to MSD algorithms that enforce (constrain an identical sequence on all states the energy landscape is simplified, which accelerates the search drastically. As a result, RECON can readily be used in simulations with a flexible protein backbone. We have benchmarked RECON on two design tasks. First, we designed antibodies derived from a common germline gene against their diverse targets to assess recovery of the germline, polyspecific sequence. Second, we design "promiscuous", polyspecific proteins against all binding partners and measure recovery of the native sequence. We show that RECON is able to efficiently recover native-like, biologically relevant sequences in this diverse set of protein complexes.

  17. Magnetic resonance imaging of the normal pituitary gland using ultrashort TE (UTE) pulse sequences (REV 1.0)

    International Nuclear Information System (INIS)

    Portman, Olivia; Flemming, Stephen; Cox, Jeremy P.D.; Johnston, Desmond G.; Bydder, Graeme M.

    2008-01-01

    The purpose of this study was to examine the normal pituitary gland in male subjects with ultrashort echo time (TE) pulse sequences, describe its appearance and measure its signal intensity before and after contrast enhancement. Eleven male volunteers (mean age 57.1 years; range 36-81 years) were examined with a fat-suppressed ultrashort TE (= 0.08 ms) pulse sequence. The studies were repeated after the administration of intravenous gadodiamide. The MR scans were examined for gland morphology and signal intensity before and after enhancement. Endocrinological evaluation included baseline pituitary function tests and a glucagon stimulatory test to assess pituitary cortisol and growth hormone reserve. High signal intensity was observed in the anterior pituitary relative to the brain in nine of the 11 subjects. These regions involved the whole of the anterior pituitary in three subjects, were localised to one side in two examples and were seen inferiorly in three subjects. Signal intensities relative to the brain increased with age, with a peak around the sixth or seventh decade and decreasing thereafter. Overall, the pituitary function tests were considered to be within normal limits and did not correlate with pituitary gland signal intensity. The anterior pituitary shows increased signal intensity in normal subjects when examined with T 1 -weighted ultrashort TE pulse sequences. The cause of this increased intensity is unknown, but fibrosis and iron deposition are possible candidates. The variation in signal intensity with age followed the temporal pattern of iron content observed at post mortem. No relationship with endocrine status was observed. (orig.)

  18. Magnetic resonance imaging of the normal pituitary gland using ultrashort TE (UTE) pulse sequences (REV 1.0)

    Energy Technology Data Exchange (ETDEWEB)

    Portman, Olivia; Flemming, Stephen; Cox, Jeremy P.D.; Johnston, Desmond G. [Imperial College Faculty of Medicine, St Mary' s Hospital, Endocrinology and Metabolic Medicine, London (United Kingdom); Bydder, Graeme M. [University of California, San Diego, Department of Radiology, San Diego, CA (United States)

    2008-03-15

    The purpose of this study was to examine the normal pituitary gland in male subjects with ultrashort echo time (TE) pulse sequences, describe its appearance and measure its signal intensity before and after contrast enhancement. Eleven male volunteers (mean age 57.1 years; range 36-81 years) were examined with a fat-suppressed ultrashort TE (= 0.08 ms) pulse sequence. The studies were repeated after the administration of intravenous gadodiamide. The MR scans were examined for gland morphology and signal intensity before and after enhancement. Endocrinological evaluation included baseline pituitary function tests and a glucagon stimulatory test to assess pituitary cortisol and growth hormone reserve. High signal intensity was observed in the anterior pituitary relative to the brain in nine of the 11 subjects. These regions involved the whole of the anterior pituitary in three subjects, were localised to one side in two examples and were seen inferiorly in three subjects. Signal intensities relative to the brain increased with age, with a peak around the sixth or seventh decade and decreasing thereafter. Overall, the pituitary function tests were considered to be within normal limits and did not correlate with pituitary gland signal intensity. The anterior pituitary shows increased signal intensity in normal subjects when examined with T{sub 1}-weighted ultrashort TE pulse sequences. The cause of this increased intensity is unknown, but fibrosis and iron deposition are possible candidates. The variation in signal intensity with age followed the temporal pattern of iron content observed at post mortem. No relationship with endocrine status was observed. (orig.)

  19. Hyaline articular cartilage: relaxation times, pulse-sequence parameters and MR appearance at 1.5 T

    Energy Technology Data Exchange (ETDEWEB)

    Chalkias, S.M. [Dept. of Radiology, A.H.E.P.A. General Hospital of the Aristotelian Univ., Thessaloniki (Greece); Pozzi-Mucelli, R.S. [Dept. of Radiology, Univ. of Trieste (Italy); Pozzi-Mucelli, M. [Orthopaedic Clinic, Univ. of Trieste (Italy); Frezza, F. [Dept. of Radiology, Univ. of Trieste (Italy); Longo, R. [Dept. of Radiology, Univ. of Trieste (Italy)

    1994-08-01

    In order to optimize the parameters for the best visualization of the internal architecture of the hyaline articular cartilage a study both ex vivo and in vivo was performed. Accurate T1 and T2 relaxation times of articular cartilage were obtained with a particular mixed sequence and then used for the creation of isocontrast intensity graphs. These graphs subsequently allowed in all pulse sequences (spin echo, SE and gradient echo, GRE) the best combination of repetition time (TR), echo time (TE) and flip angle (FA) for optimization of signal differences between MR cartilage zones. For SE sequences maximum contrast between cartilage zones can be obtained by using a long TR (> 1,500 ms) with a short TE (< 30 ms), whereas for GRE sequences maximum contrast is obtained with the shortest TE (< 15 ms) combined with a relatively long TR (> 400 ms) and an FA greater than 40 . A trilaminar appearance was demonstrated with a superficial and deep hypointense zone in all sequences and an intermediate zone that was moderately hyperintense on SE T1-weighted images, slightly more hyperintense on proton density Rho and SE T2-weighted images and even more hyperintense on GRE images. (orig.)

  20. Intestinal lesions in pediatric Crohn disease: comparative detectability among pulse sequences at MR enterography

    International Nuclear Information System (INIS)

    Sohn, Beomseok; Kim, Myung-Joon; Lee, Mi-Jung; Koh, Hong; Han, Kyung Hwa

    2014-01-01

    Variable sequences can be used in MR enterography, and no consensus exists for the best protocol in children with Crohn disease. To compare the lesion detectability of various MR enterography sequences and to correlate the findings of these sequences with the Pediatric Crohn's Disease Activity Index (PCDAI) in children with Crohn disease. Children with clinically or pathologically confirmed Crohn disease underwent MR enterography, including a single-shot fast spin-echo (SSFSE) sequence, motility imaging (coronal 2-D balanced fast field echo), diffusion-weighted imaging (DWI), and dynamic contrast enhancement imaging (including arterial, portal and delayed phases). The lesion detectability of each sequence was graded 0-2 for each involved bowel segment. The lesion detectability and PCDAI result on different sequences were compared using the weighted least squares method and Student's t-test, respectively. Fifteen children (11 boys, 4 girls, mean age 13.7 ± 1.4 years) with a total of 41 lesions were included in this study. All lesions detected in more than two sequences were visible on the single-shot fast spin-echo (SSFSE) sequence. The relative lesion detection rate was 78.1% on motility imaging, 90.2% on DWI, and 92.7% on arterial, 95.1% on portal and 95.1% on delayed phase imaging. Compared to the SSFSE sequence, motility imaging (P < 0.001) and DWI (P = 0.039) demonstrated lower detectability. The mean PCDAI result in the detected lesions was statistically higher only on dynamic enhancement imaging (P < 0.001). All MR enterography sequences were found to have relatively high lesion detectability in children with Crohn disease, while motility imaging showed the lowest lesion detectability. Lesions detected on dynamic enhancement imaging showed a higher PCDAI result, which suggests that this sequence is specific for active inflammation. (orig.)

  1. Real-time flow - determination of vena cava inferior on two different levels via 'RACE' pulse sequence in MR

    International Nuclear Information System (INIS)

    Helzel, M.V.; Mueller, E.

    1993-01-01

    A new and simple parameter for quantiative evaluation of liver perfusion is outlined: Post-sinusoidal quantitative measurement of the entire liver venous flow: This is a result of the differences in evaluated flow volumes at two different levels in the inferior V.cava. The first level is the height of diaphragm, and the second is situated just cranial of the renal vessels. Normal values obtained from a group of healthy volunteers are presented. A gradient-echo pulse sequence called RACE, enabling flow measurements in real-time, is outlined. (orig.) [de

  2. The effective reflection of a pulse sequence from a four-wave mirror with thermal nonlinearity under parametric feedback

    Science.gov (United States)

    Barashkov, M. S.; Bel'Diugin, I. M.; Zolotarev, M. V.; Kruzhilin, Iu. I.; Krymskii, M. I.

    1989-04-01

    A four-wave mirror with thermal nonlinearity has been experimentally realized with the interaction of corunning waves under parametric feedback with a nonreciprocal element. The effective reflection of a sequence of pulses with duration of about 300 ns from a neodymium-glass laser with maximal reflection coefficients greater than 30 has been demonstrated. The quality of the radiation reflected from the mirror is studied. A significant reduction in the steady-state lasing threshold has been shown with thermal nonlinearity at small angles of the interacting beam convergence, compared to the case of counterrunning convergence.

  3. Detailed design, fabrication and testing of an engineering prototype compensated pulsed alternator. Final report

    International Nuclear Information System (INIS)

    Bird, W.L. Jr.; Woodson, H.H.

    1980-03-01

    The design, fabrication, and test results of a prototype compensated pulsed alternator are discussed. The prototype compulsator is a vertical shaft single phase alternator with a rotating armature and salient pole stator. The machine is designed for low rep rate pulsed duty and is sized to drive a modified 10 cm Beta amplifier. The load consists of sixteen 15 mm x 20 mm x 112 cm long xenon flashlamps connected in parallel. The prototype compulsator generates an open circuit voltage of 6 kV, 180 Hz, at a maximum design speed of 5400 rpm. At maximum speed, the inertial energy stored in the compulsator rotor is 3.4 megajoules

  4. The depletion of protein signals in metabonomics analysis with the WET-CPMG pulse sequence

    International Nuclear Information System (INIS)

    Van, Que N.; Chmurny, Gwendolyn N.; Veenstra, Timothy D.

    2003-01-01

    Nuclear magnetic resonance (NMR) spectroscopy is a powerful analytical tool capable of providing a comprehensive metabolic profile of biofluids such as urine, plasma, and serum. Unfortunately, when measuring serum and plasma, the high protein concentration can obscure the signals originating from low molecular weight metabolites. We evaluated the use of different parameters within the Carr-Purcell-Meiboom-Gill (CPMG) pulse train of fast spin-echoes to remove the macromolecular signal contribution in one-dimensional proton ( 1 H) NMR spectra. Experimental parameters such as the refocusing delay in the CPMG pulse train, pulse miscalibration, and recycle time were examined to assess the ability to remove the protein signals from the spectrum without causing a deleterious effect on the signals originating from free, low molecular weight metabolites. The 1 H-NMR spectra of a variety of serum samples spiked with 2 ' -deoxyadenosine were acquired using various acquisition parameters. Our results show that the delay used in the CPMG spin-echo and the combination of the acquisition pulse flip angle and recycle time are the two major factors affecting the observed metabolite signal amplitudes in the resulting 1 H-NMR spectrum

  5. Simulating quantum search algorithm using vibronic states of I2 manipulated by optimally designed gate pulses

    International Nuclear Information System (INIS)

    Ohtsuki, Yukiyoshi

    2010-01-01

    In this paper, molecular quantum computation is numerically studied with the quantum search algorithm (Grover's algorithm) by means of optimal control simulation. Qubits are implemented in the vibronic states of I 2 , while gate operations are realized by optimally designed laser pulses. The methodological aspects of the simulation are discussed in detail. We show that the algorithm for solving a gate pulse-design problem has the same mathematical form as a state-to-state control problem in the density matrix formalism, which provides monotonically convergent algorithms as an alternative to the Krotov method. The sequential irradiation of separately designed gate pulses leads to the population distribution predicted by Grover's algorithm. The computational accuracy is reduced by the imperfect quality of the pulse design and by the electronic decoherence processes that are modeled by the non-Markovian master equation. However, as long as we focus on the population distribution of the vibronic qubits, we can search a target state with high probability without introducing error-correction processes during the computation. A generalized gate pulse-design scheme to explicitly include decoherence effects is outlined, in which we propose a new objective functional together with its solution algorithm that guarantees monotonic convergence.

  6. Optimal pulse modulator design criteria for plasma source ion implanters

    International Nuclear Information System (INIS)

    Reass, W.

    1993-01-01

    This paper describes what are believed to be the required characteristics of a high-voltage modulator for efficient and optimal ion deposition from the ''Plasma Source Ion Implantation'' (PSII) process. The PSII process is a method to chemically or physically alter and enhance surface properties of objects by placing them in a weakly ionized plasma and pulsing the object with a high negative voltage. The attracted ions implant themselves and form chemical bonds or are interstitially mixed with the base material. Present industrial uses of implanted objects tends to be for limited-production, high-value-added items. Traditional implanting hardware uses the typical low-current (ma) semiconductor ''raster scan'' implanters. The targets must also be manipulated to maintain a surface normal to the ion beam. The PSII method can provide ''bulk'' equipment processing on a large industrial scale. For the first generation equipment, currents are scaled from milliamps to hundreds of amps, voltages to -175kV, at kilohertz rep-rates, and high plasma ion densities

  7. AbDesign: An algorithm for combinatorial backbone design guided by natural conformations and sequences.

    Science.gov (United States)

    Lapidoth, Gideon D; Baran, Dror; Pszolla, Gabriele M; Norn, Christoffer; Alon, Assaf; Tyka, Michael D; Fleishman, Sarel J

    2015-08-01

    Computational design of protein function has made substantial progress, generating new enzymes, binders, inhibitors, and nanomaterials not previously seen in nature. However, the ability to design new protein backbones for function--essential to exert control over all polypeptide degrees of freedom--remains a critical challenge. Most previous attempts to design new backbones computed the mainchain from scratch. Here, instead, we describe a combinatorial backbone and sequence optimization algorithm called AbDesign, which leverages the large number of sequences and experimentally determined molecular structures of antibodies to construct new antibody models, dock them against target surfaces and optimize their sequence and backbone conformation for high stability and binding affinity. We used the algorithm to produce antibody designs that target the same molecular surfaces as nine natural, high-affinity antibodies; in five cases interface sequence identity is above 30%, and in four of those the backbone conformation at the core of the antibody binding surface is within 1 Å root-mean square deviation from the natural antibodies. Designs recapitulate polar interaction networks observed in natural complexes, and amino acid sidechain rigidity at the designed binding surface, which is likely important for affinity and specificity, is high compared to previous design studies. In designed anti-lysozyme antibodies, complementarity-determining regions (CDRs) at the periphery of the interface, such as L1 and H2, show greater backbone conformation diversity than the CDRs at the core of the interface, and increase the binding surface area compared to the natural antibody, potentially enhancing affinity and specificity. © 2015 Wiley Periodicals, Inc.

  8. Optimization of parameter values for complex pulse sequences by simulated annealing: application to 3D MP-RAGE imaging of the brain.

    Science.gov (United States)

    Epstein, F H; Mugler, J P; Brookeman, J R

    1994-02-01

    A number of pulse sequence techniques, including magnetization-prepared gradient echo (MP-GRE), segmented GRE, and hybrid RARE, employ a relatively large number of variable pulse sequence parameters and acquire the image data during a transient signal evolution. These sequences have recently been proposed and/or used for clinical applications in the brain, spine, liver, and coronary arteries. Thus, the need for a method of deriving optimal pulse sequence parameter values for this class of sequences now exists. Due to the complexity of these sequences, conventional optimization approaches, such as applying differential calculus to signal difference equations, are inadequate. We have developed a general framework for adapting the simulated annealing algorithm to pulse sequence parameter value optimization, and applied this framework to the specific case of optimizing the white matter-gray matter signal difference for a T1-weighted variable flip angle 3D MP-RAGE sequence. Using our algorithm, the values of 35 sequence parameters, including the magnetization-preparation RF pulse flip angle and delay time, 32 flip angles in the variable flip angle gradient-echo acquisition sequence, and the magnetization recovery time, were derived. Optimized 3D MP-RAGE achieved up to a 130% increase in white matter-gray matter signal difference compared with optimized 3D RF-spoiled FLASH with the same total acquisition time. The simulated annealing approach was effective at deriving optimal parameter values for a specific 3D MP-RAGE imaging objective, and may be useful for other imaging objectives and sequences in this general class.

  9. Design of Long Period Pseudo-Random Sequences from the Addition of -Sequences over

    Directory of Open Access Journals (Sweden)

    Ren Jian

    2004-01-01

    Full Text Available Pseudo-random sequence with good correlation property and large linear span is widely used in code division multiple access (CDMA communication systems and cryptology for reliable and secure information transmission. In this paper, sequences with long period, large complexity, balance statistics, and low cross-correlation property are constructed from the addition of -sequences with pairwise-prime linear spans (AMPLS. Using -sequences as building blocks, the proposed method proved to be an efficient and flexible approach to construct long period pseudo-random sequences with desirable properties from short period sequences. Applying the proposed method to , a signal set is constructed.

  10. Design of Robust Pulses to Insufficient Synchronization for OFDM/OQAM Systems in Doubly Dispersive Channels

    Directory of Open Access Journals (Sweden)

    Yu Zhao

    2015-01-01

    Full Text Available This paper presents a pulse shaping method robust to insufficient synchronization in orthogonal frequency division multiplexing with offset quadrature amplitude modulation (OFDM/OQAM systems over doubly dispersive (DD channels. The proposed pulse is designed as a linear combination of several well localized Hermite functions. The coefficients optimization problem is modeled as a nonconvex constrained fractional programming problem based on the signal-to-interference ratio (SIR maximization criterion. An efficient iterative algorithm is applied to simplify the problem to a series of quadratically constrained quadratic program (QCQP problems which can be solved by semidefinite relaxation (SDR method. Simulation results show that the proposed pulse is superior to traditional pulses with respect to SIR performance over DD channels in the presence of carrier frequency offset (CFO and timing offset (TO.

  11. Design of a variable width pulse generator feasible for manual or automatic control

    Energy Technology Data Exchange (ETDEWEB)

    Vegas, I., E-mail: ignacio.vegas@pas.ucm.es; Antoranz, P.; Miranda, J.M.; Franco, F.J.

    2017-01-01

    A variable width pulse generator featuring more than 4-V peak amplitude and less than 10-ns FWHM is described. In this design the width of the pulses is controlled by means of the control signal slope. Thus, a variable transition time control circuit (TTCC) is also developed, based on the charge and discharge of a capacitor by means of two tunable current sources. Additionally, it is possible to activate/deactivate the pulses when required, therefore allowing the creation of any desired pulse pattern. Furthermore, the implementation presented here can be electronically controlled. In conclusion, due to its versatility, compactness and low cost it can be used in a wide variety of applications.

  12. HV discharge acceleration by sequences of UV laser filaments with visible and near-infrared pulses

    Science.gov (United States)

    Schubert, Elise; Rastegari, Ali; Feng, Chengyong; Mongin, Denis; Kamer, Brian; Kasparian, Jérôme; Wolf, Jean-Pierre; Arissian, Ladan; Diels, Jean-Claude

    2017-12-01

    We investigate the triggering and guiding of DC high-voltage discharges over a distance of 37 cm by filaments produced by ultraviolet (266 nm) laser pulses of 200 ps duration. The latter reduce the breakdown electric field by half and allow up to 80% discharge probability in an electric field of 920 kV m–1. This high efficiency is not further increased by adding nanosecond pulses in the Joule range at 532 and at 1064 nm. However, the latter statistically increases the guiding length, thereby accelerating the discharge by a factor of 2. This effect is due both to photodetachment and to the heating of the plasma channel, that increases the efficiency of avalanche ionization and reduces electron attachment and recombination.

  13. MRI in neuro-Behcet's syndrome: comparison of conventional spin-echo and FLAIR pulse sequences

    International Nuclear Information System (INIS)

    Jaeger, H.R.; Albrecht, T.; Curati-Alasonatti, W.L.; Williams, E.J.; Haskard, D.O.

    1999-01-01

    We compared the sensitivity of a fluid-attenuated inversion-recovery (FLAIR) sequence with that of a conventional dual-echo spin-echo (SE) sequence to brain lesions in 20 patients with Behcet's syndrome. They underwent 25 MRI examinations. The images were independently analysed for the number, type and anatomical location of lesions shown. There were 18 abnormal studies (13 initial and 5 follow-up). The FLAIR sequence detected significantly more lesions than the SE TE 80 (P < 0.05) and SE TE 20 (P < 0.01) sequences. It was particularly useful for demonstrating lesions in the juxtacortical white matter, which accounted for over half the lesions detected on the FLAIR images. Of patients presenting with nonspecific symptoms such as headache, seven had normal and five had abnormal studies. All patients presenting with focal neurological signs had abnormal imaging. We found supratentorial and, in particular, juxtacortical lesions to be more frequent than previously described. (orig.)

  14. WE-DE-206-04: MRI Pulse Sequences - Spin Echo, Gradient Echo, EPI, Non-Cartesia

    Energy Technology Data Exchange (ETDEWEB)

    Pooley, R. [Mayo Clinic (United States)

    2016-06-15

    Magnetic resonance imaging (MRI) has become an essential part of clinical imaging due to its ability to render high soft tissue contrast. Instead of ionizing radiation, MRI use strong magnetic field, radio frequency waves and field gradients to create diagnostic useful images. It can be used to image the anatomy and also functional and physiological activities within the human body. Knowledge of the basic physical principles underlying MRI acquisition is vitally important to successful image production and proper image interpretation. This lecture will give an overview of the spin physics, imaging principle of MRI, the hardware of the MRI scanner, and various pulse sequences and their applications. It aims to provide a conceptual foundation to understand the image formation process of a clinical MRI scanner. Learning Objectives: Understand the origin of the MR signal and contrast from the spin physics level. Understand the main hardware components of a MRI scanner and their purposes Understand steps for MR image formation including spatial encoding and image reconstruction Understand the main kinds of MR pulse sequences and their characteristics.

  15. Design of optimal laser pulses to control molecular rovibrational ...

    Indian Academy of Sciences (India)

    Optimal control theory in combination with time-dependent quantum dynamics is employed to design laser ... area of quantum computing,22 use of molecular states of various systems ..... frequency) and ωv=0, j=1→v=1, j=0, along with small con- tributions from ... discussed here for three rovibrational excitation pro- cesses.

  16. A fast pulse design for parallel excitation with gridding conjugate gradient.

    Science.gov (United States)

    Feng, Shuo; Ji, Jim

    2013-01-01

    Parallel excitation (pTx) is recognized as a crucial technique in high field MRI to address the transmit field inhomogeneity problem. However, it can be time consuming to design pTx pulses which is not desirable. In this work, we propose a pulse design with gridding conjugate gradient (CG) based on the small-tip-angle approximation. The two major time consuming matrix-vector multiplications are substituted by two operators which involves with FFT and gridding only. Simulation results have shown that the proposed method is 3 times faster than conventional method and the memory cost is reduced by 1000 times.

  17. Design of homopolar motor-generators for pulsed power applications

    International Nuclear Information System (INIS)

    Weldon, W.F.; Driga, M.D.; Rylander, H.G.; Woodson, H.H.

    1976-01-01

    Present design studies and experimental research are concentrating on producing low inductance, low resistance, high speed machines with short current-diffusion times. Current collectors for use at high speed (up to 450 m/sec) are under experimental investigation in a separate brush test facility. These studies and tests are summarized in a form to facilitate determining the compatibility of homopolar machines and specific loads

  18. Design of pulse oximetry signal based on personal computer for detection oxygen saturation

    International Nuclear Information System (INIS)

    Umi Salamah; Margi Sasono

    2015-01-01

    The lack or excess of oxygen in the blood will cause healthy and body system disorder. At certain level, the disease can lead to death. For that reason, the information about oxygen saturation in blood becomes important to be identified. One of the devices used to monitor the blood oxygen saturation is pulse oximetry. This research attempt to designed Pulse Oximetry based on personal computer using red LED and infrared as its light source, while the light sensor using photodiode. The designed Pulse Oximetry is a non-invasive instrumentation which LED drivers is placed on the fingertips. The LED light goes through the finger will be a signal that is fed to the photodiode and will be converted into digital signals by ADC (Analog to Digital Converter) and will be processed further by a personal computer to display the pulse oximetry graphics. This study uses Delphi 7, Microsoft Excel, and Mt Lab as its software.This designed pulse oximetry has been tested in two peoples: sample A, male 38 years; and sample B, a woman 23 years old. Oxygen saturation of sample A is 80.75, while the sample B is 90.75. (author)

  19. SCREAMER: a single-line pulsed-power design tool

    International Nuclear Information System (INIS)

    Kiefer, M.L.; Widner, M.M.

    1985-01-01

    SCREAMER is a special purpose circuit code developed as a design tool for single module accelerators. It is fast, accurate, flexible, and user-friendly. Its development was motivated by the excessive costs and long turn-around times incurred when using the SCEPTRE circuit analysis code to perform simulations of circuits with large numbers of nodes and with nonlinear components. Comparable simulations between SCREAMER running on a VAX 11/780 and SCEPTRE running on a CRAY-1S show that turn-around times and costs can be two orders of magnitude lower when using SCREAMER

  20. SCREAMER - A single-line pulsed-power design tool

    International Nuclear Information System (INIS)

    Kiefer, M.L.; Widner, M.M.

    1985-01-01

    SCREAMER is a special purpose circuit code developed as a design tool for single module accelerators. it is fast, accurate, flexible, and user-friendly. Its development was motivated by the excessive costs and long turn-around times incurred when using the SCEPTRE circuit analysis code to perform simulations of circuits with large numbers of modes and with nonlinear components. Comparable simulations between SCREAMER running on a VAX 11/780 and SCEPTRE running on a CRAY-1S show that turn-around times and costs can be two orders of magnitude lower when using SCREAMER

  1. Adenosine stress cardiovascular magnetic resonance with variable-density spiral pulse sequences accurately detects coronary artery disease: initial clinical evaluation.

    Science.gov (United States)

    Salerno, Michael; Taylor, Angela; Yang, Yang; Kuruvilla, Sujith; Ragosta, Michael; Meyer, Craig H; Kramer, Christopher M

    2014-07-01

    Adenosine stress cardiovascular magnetic resonance perfusion imaging can be limited by motion-induced dark-rim artifacts, which may be mistaken for true perfusion abnormalities. A high-resolution variable-density spiral pulse sequence with a novel density compensation strategy has been shown to reduce dark-rim artifacts in first-pass perfusion imaging. We aimed to assess the clinical performance of adenosine stress cardiovascular magnetic resonance using this new perfusion sequence to detect obstructive coronary artery disease. Cardiovascular magnetic resonance perfusion imaging was performed during adenosine stress (140 μg/kg per minute) and at rest on a Siemens 1.5-T Avanto scanner in 41 subjects with chest pain scheduled for coronary angiography. Perfusion images were acquired during injection of 0.1 mmol/kg Gadolinium-diethylenetriaminepentacetate at 3 short-axis locations using a saturation recovery interleaved variable-density spiral pulse sequence. Significant stenosis was defined as >50% by quantitative coronary angiography. Two blinded reviewers evaluated the perfusion images for the presence of adenosine-induced perfusion abnormalities and assessed image quality using a 5-point scale (1 [poor] to 5 [excellent]). The prevalence of obstructive coronary artery disease by quantitative coronary angiography was 68%. The average sensitivity, specificity, and accuracy were 89%, 85%, and 88%, respectively, with a positive predictive value and negative predictive value of 93% and 79%, respectively. The average image quality score was 4.4±0.7, with only 1 study with more than mild dark-rim artifacts. There was good inter-reader reliability with a κ statistic of 0.67. Spiral adenosine stress cardiovascular magnetic resonance results in high diagnostic accuracy for the detection of obstructive coronary artery disease with excellent image quality and minimal dark-rim artifacts. © 2014 American Heart Association, Inc.

  2. Design and development of high voltage MARX modulator technology for long pulse application

    International Nuclear Information System (INIS)

    Acharya, Mahesh; Shrivastava, Purushottam

    2013-01-01

    High power pulse modulators are used for powering the RF amplifier like klystrons. This paper describes the development of a 10 kV, 10 A, 1 ms Marx modulator for technology demonstration. The modulator is developed using four no. of main modules each of 2.5 kV. To reduce the over sizing factor of capacitors, the allowed drop of main Marx cell is 9%. A droop compensation circuit has been developed to reduce the output pulse voltage droop from 9% to within ±1%. Droop compensation consists of 10 numbers of corrector modules each of 200 V. A microcontroller based trigger circuit was used for simultaneous triggering of main modules and for staggered triggering of corrector modules. A 25 kV, 10 A, 1 ms Marx modulator is being developed. The advantages of this scheme are oil free design, low DC voltage, adjustable pulse width, adjustable rise time/fall time and modular design etc. (author)

  3. MR arthrography of the shoulder: Optimizing pulse sequence protocols for the evaluation of cartilage and labrum

    Energy Technology Data Exchange (ETDEWEB)

    Guermazi, Ali, E-mail: Ali.Guermazi@aspetar.com [ASPETAR – Qatar Orthopaedic and Sports Medicine Hospital, Sport City Street, Near Khalifa Stadium, P.O. Box 29222 (Qatar); Department of Radiology, Boston University School of Medicine, 820 Harrison Avenue, FGH Building, 3rd Floor, Boston, MA 02118 (United States); Jomaah, Nabil [ASPETAR – Qatar Orthopaedic and Sports Medicine Hospital, Sport City Street, Near Khalifa Stadium, P.O. Box 29222 (Qatar); Hayashi, Daichi [ASPETAR – Qatar Orthopaedic and Sports Medicine Hospital, Sport City Street, Near Khalifa Stadium, P.O. Box 29222 (Qatar); Department of Radiology, Boston University School of Medicine, 820 Harrison Avenue, FGH Building, 3rd Floor, Boston, MA 02118 (United States); Department of Radiology, Bridgeport Hospital, Yale University School of Medicine, 267 Grant Street, Bridgeport, CT 06610 (United States); Jarraya, Mohamed [ASPETAR – Qatar Orthopaedic and Sports Medicine Hospital, Sport City Street, Near Khalifa Stadium, P.O. Box 29222 (Qatar); Department of Radiology, Boston University School of Medicine, 820 Harrison Avenue, FGH Building, 3rd Floor, Boston, MA 02118 (United States); Silva, Jose Roberto [Department of Radiology, Boston University School of Medicine, 820 Harrison Avenue, FGH Building, 3rd Floor, Boston, MA 02118 (United States); Niu, Jingbo [Clinical Epidemiology Research and Training Unit, Boston University School of Medicine, 650 Albany Street, Suite 200, Boston, MA 02118 (United States); Almusa, Emad; Landreau, Philippe [ASPETAR – Qatar Orthopaedic and Sports Medicine Hospital, Sport City Street, Near Khalifa Stadium, P.O. Box 29222 (Qatar); and others

    2014-08-15

    Objectives: To compare axial T1weighted fat-saturated (T1w fs) and T1w non-fs sequences, and coronal T1w-fs and T2w-fs sequences, for evaluation of cartilage and labrum using CT arthrography (CTA) as the reference. Methods: Patients had MR arthrography (MRA) and CTA of the shoulder on the same day. Cartilage was assessed for superficial and full thickness focal and diffuse damage. Labral lesions were graded for Bankart variants and SLAP lesions. CTA images were read for the same features. The diagnostic performance of MRA including area under the curve (AUC) was evaluated against CTA. Results: When comparing axial sequences, the diagnostic performance for cartilage lesion detection on T1w non-fs was 61.9% (sensitivity) 93.6% (specificity) and 89.5% (accuracy) with AUC 0.782, while that for T1w fs was 61.9%, 94.0%, 89.8% and 0.783. For labral assessment, it was 89.1%, 93.0%, 91.4% and 0.919 for T1w non-fs, and 89.9%, 94.0%, 92.6% and 0.922 for T1w fs. Comparing coronal sequences, diagnostic performance for cartilage was 42.5%, 97.5%, 89.8% and 0.702 for T1w fs, and 38.4%, 98.7%, 90.2%, and 0.686 for T2w fs. For the labrum it was 85.1%, 87.5%, 86.2%, and 0.868 for T1w fs, and 75.7%, 97.5%, 80.8% and 0.816 for T2w fs. Conclusions: Axial T1w fs and T1w non-fs sequences are comparable in their ability to diagnose cartilage and labral lesions. Coronal T1w fs sequence offers slightly higher sensitivity but slightly lower specificity than T2w fs sequence for diagnosis of cartilage and labral lesions.

  4. MR arthrography of the shoulder: Optimizing pulse sequence protocols for the evaluation of cartilage and labrum

    International Nuclear Information System (INIS)

    Guermazi, Ali; Jomaah, Nabil; Hayashi, Daichi; Jarraya, Mohamed; Silva, Jose Roberto; Niu, Jingbo; Almusa, Emad; Landreau, Philippe

    2014-01-01

    Objectives: To compare axial T1weighted fat-saturated (T1w fs) and T1w non-fs sequences, and coronal T1w-fs and T2w-fs sequences, for evaluation of cartilage and labrum using CT arthrography (CTA) as the reference. Methods: Patients had MR arthrography (MRA) and CTA of the shoulder on the same day. Cartilage was assessed for superficial and full thickness focal and diffuse damage. Labral lesions were graded for Bankart variants and SLAP lesions. CTA images were read for the same features. The diagnostic performance of MRA including area under the curve (AUC) was evaluated against CTA. Results: When comparing axial sequences, the diagnostic performance for cartilage lesion detection on T1w non-fs was 61.9% (sensitivity) 93.6% (specificity) and 89.5% (accuracy) with AUC 0.782, while that for T1w fs was 61.9%, 94.0%, 89.8% and 0.783. For labral assessment, it was 89.1%, 93.0%, 91.4% and 0.919 for T1w non-fs, and 89.9%, 94.0%, 92.6% and 0.922 for T1w fs. Comparing coronal sequences, diagnostic performance for cartilage was 42.5%, 97.5%, 89.8% and 0.702 for T1w fs, and 38.4%, 98.7%, 90.2%, and 0.686 for T2w fs. For the labrum it was 85.1%, 87.5%, 86.2%, and 0.868 for T1w fs, and 75.7%, 97.5%, 80.8% and 0.816 for T2w fs. Conclusions: Axial T1w fs and T1w non-fs sequences are comparable in their ability to diagnose cartilage and labral lesions. Coronal T1w fs sequence offers slightly higher sensitivity but slightly lower specificity than T2w fs sequence for diagnosis of cartilage and labral lesions

  5. The design of multi-channel pulse amplitude analyzer based on ARM micro controller

    International Nuclear Information System (INIS)

    Li Hai; Li Xiang; Liu Caixue

    2010-01-01

    It introduces the design of multi-channel pulse amplitude analyzer based on embedded ARM micro-controller. The embedded and real-time system μC/OS-II builds up the real-time and stability of the system and advances the integration. (authors)

  6. Purex pulse column designs for capacity factor of 3.0 to 3.5

    Energy Technology Data Exchange (ETDEWEB)

    Richardson, G.L.

    1955-04-12

    This memorandum indicates the Purex-Plant pulse-column and pulse- generator revisions which would be required to assure an instantaneous capacity of 25 tons U/day with a 20% capacity safety margin under Purex HW {number_sign}3 Flowsheet conditions. (The use of the Purex HW {number_sign}4 Flowsheet (6) with the revised columns would be expected to increase the capacity to 29 or 30 tons U/day.) The indicated design changes are recorded here for study and for possible reference if need for increased production capacity should arise. No recommendation for adoption at this time is made.

  7. Design of a 17.14 GHz quasi-optical pulse compressor

    International Nuclear Information System (INIS)

    Petelin, M. I.; Kuzikov, S. V.; Danilov, Yu. Yu.; Granatstein, V. L.; Nusinovich, G. S.

    1999-01-01

    A quasi-optical version of the ring cavity pulse compressor is considered. This concept is based on the coupling of the input wave to a whispering gallery mode of a barrel-like cavity due to helical corrugations of the cavity wall. Low-power tests of the prototype were carried out at 11.4 GHz and demonstrated reasonable agree-ment between experimental data and theoretical predictions. The design of a similar pulse compressor at 17.14 GHz compatible with the 17.14 GHz, 100 MW gyroklystron currently under development at the University of Maryland is presented

  8. Design of linear pulse motor for control element drive mechanism of SMART

    International Nuclear Information System (INIS)

    Kim, J. H.; Huh, H.; Kim, J. I.; Jang, M. H.; Kang, D. H.

    1999-01-01

    49 Control Rod Drive Mechanisms(CEDMs) are densely installed on the reactor central head of SMART. The structural design should ensure the space for maintenance/repair, cable routing, and heat release from the motor. In this paper, an improved design is presented to enlarge the space between CEDMs by decreasing the diameter of linear pulse motor. The reduction of motor thrust force due to the decrease of the motor diameter is compensated by resizing the other structural components

  9. MR of normal pancreas : comparison of five pulse sequences and enhancing patterns on dynamic imaging

    International Nuclear Information System (INIS)

    Jang, Hyun Jung; Kim, Tae Kyoung; Hong, Sung Hwan; Han, Joon Koo; Choi, Byung Ihn

    1997-01-01

    To compare T1-weighted FLASH and turbo spin echo (SE) T2-weighted sequences with conventional T1- and T2-weighted sequences in imaging normal pancreas and to describe the enhancing patterns on dynamic MR imging. Forty-four patients with presumed hepatic hemangiomas were studied at 1.0T or 1.5T by using conventional SE sequences (T1-weighted, T2-weighted, and heavily T2-weighted), turbo-SE T2-weighted sequences, and breath-hold T1-weighted FLASH sequences acquired before, immediately on, and at 1, 2, 3, and 5 or 10 minutes after injection of a bolus of gadopentetate dimeglumine. No patients had either a history or its clinical features of pancreatic disease. Images were quantitatively analyzed for signal-difference-to noise ratios (SD/Ns) between the pancreas and peripancreatic fat. Percentage enhancement of the pancreas was measured on each dynamic MR image. Conspicuity of the pancreatic border was qualitatively evaluated according to a consensus, reached by three radiologists. Turbo-SE T2-weighted images had a significantly higher SD/N ratio (p<0.001) and better conspicuity of the pancreatic border (p<0.001) than SE T2- and heavily T2-weighted images;T1-weighted SE images had a significantly higher SD/N ratio than T1-weighted FLASH images (p<0.001), but there was no significant difference between tham in qualitative analysis (p=0.346). Percentage enhancement immediately on and at 1, 2, 3, 5, and 10 minutes after administration of contrast material was 39.9%, 44.5%, 42.9%, 40.8%, 36.3%, 29.9%, respectively, with peak enhancement at 1 minute. In MR imaging of normal pancreas, turbo-SE T2-weighted imaging is superior to SE T2- and heavily T2- weighted imaging, and SE T1-weighted imaging is superior to T1-weighted FLASH imaging. On serial gadolinium-enhanced FLASH imaging, normal pancreas shows peak enhancement at 1 minute

  10. The Design of Control Pulses for Heisenberg Always-On Qubit Models

    Science.gov (United States)

    Magyar, Rudolph

    2015-03-01

    One model for a universal quantum computer is a spin array with constant nearest neighbor interactions and a controlled unidirectional site-specific magnetic field to generate unitary transformations. This system can be described by a Heisenberg spin Hamiltonian and can be simulated for on the order of 50 spins. It has recently been shown that time-dependent density functional inspired methods may be used to relate various spin models of qubits to ones that may be easier to compute numerically allowing potentially the efficient simulation of greater numbers of spins. One of the challenges of such an agenda is the identification of control pulses that produce desired gate operations (CNOT and single qubit phase gates). We apply control theory to design a universal set of pulses for a Heisenberg always-on model Hamiltonian for a few qubits and compare to known pulses when available. We suggest how this approach may be useful to design control pulses in other realistic designs. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's National Security Administration under contract DE-AC04-94AL85000.

  11. Conceptual design of a generic pulse schedule and event handling editor for improved fusion device operation

    International Nuclear Information System (INIS)

    Barana, Oliviero; Nouailletas, Rémy; Brémond, Sylvain; Moreau, Philippe; Allegretti, Ludovic; Balme, Stéphane; Ravenel, Nathalie; Mannori, Simone; Guillerminet, Bernard; Leroux, Fabrice; Douai, David; Nardon, Eric; Hertout, Patrick; Saint-Laurent, François

    2013-01-01

    Highlights: ► Real-time event handling requires extended functionalities of pulse schedule editors and plasma control systems ► A new pulse schedule editor, conceived for parameterization of systematic off-normal event handling, is described ► A global, generic approach on off-normal event handling is highlighted ► The functional architecture of an off-normal event handling oriented plasma control system is discussed ► The main objects of the pulse schedule editor are the segment-descriptor object and the scenario-descriptor object. -- Abstract: Coping with unexpected events is an important issue of nuclear fusion experiments. The future machines, characterized by very long plasma discharges and actively cooled metallic plasma-facing components, will require a systematic intervention in real time, in order to maximize the performance and protect the investment. The real-time management of events will require extending the functionalities of the current pulse schedule editors with the possibility of using reference waveforms provided with acceptability margins and setting up advanced mitigation strategies and event countermeasures. With this purpose, a new pulse schedule editor, based on a time-segment approach for the preparation of experimental scenarios, is being conceived on Tore Supra, together with a new plasma control system. This paper will report on their conceptual design and give account of the preliminary results of a feasibility study currently under way in order to prepare a possible implementation on Tore Supra

  12. Optimized extraction of polysaccharides from corn silk by pulsed electric field and response surface quadratic design.

    Science.gov (United States)

    Zhao, Wenzhu; Yu, Zhipeng; Liu, Jingbo; Yu, Yiding; Yin, Yongguang; Lin, Songyi; Chen, Feng

    2011-09-01

    Corn silk is a traditional Chinese herbal medicine, which has been widely used for treatment of some diseases. In this study the effects of pulsed electric field on the extraction of polysaccharides from corn silk were investigated. Polysaccharides in corn silk were extracted by pulsed electric field and optimized by response surface methodology (RSM), based on a Box-Behnken design (BBD). Three independent variables, including electric field intensity (kV cm(-1) ), ratio of liquid to raw material and pulse duration (µs), were investigated. The experimental data were fitted to a second-order polynomial equation and also profiled into the corresponding 3-D contour plots. Optimal extraction conditions were as follows: electric field intensity 30 kV cm(-1) , ratio of liquid to raw material 50, and pulse duration 6 µs. Under these condition, the experimental yield of extracted polysaccharides was 7.31% ± 0.15%, matching well with the predicted value. The results showed that a pulsed electric field could be applied to extract value-added products from foods and/or agricultural matrix. Copyright © 2011 Society of Chemical Industry.

  13. Conceptual design of a generic pulse schedule and event handling editor for improved fusion device operation

    Energy Technology Data Exchange (ETDEWEB)

    Barana, Oliviero, E-mail: oliviero.barana@cea.fr [CEA, IRFM, F-13108 Saint-Paul-Lez Durance (France); Nouailletas, Rémy; Brémond, Sylvain; Moreau, Philippe; Allegretti, Ludovic; Balme, Stéphane; Ravenel, Nathalie [CEA, IRFM, F-13108 Saint-Paul-Lez Durance (France); Mannori, Simone [ENEA C.R. Brasimone, 40032 Camugnano (Italy); Guillerminet, Bernard; Leroux, Fabrice; Douai, David; Nardon, Eric; Hertout, Patrick; Saint-Laurent, François [CEA, IRFM, F-13108 Saint-Paul-Lez Durance (France)

    2013-10-15

    Highlights: ► Real-time event handling requires extended functionalities of pulse schedule editors and plasma control systems ► A new pulse schedule editor, conceived for parameterization of systematic off-normal event handling, is described ► A global, generic approach on off-normal event handling is highlighted ► The functional architecture of an off-normal event handling oriented plasma control system is discussed ► The main objects of the pulse schedule editor are the segment-descriptor object and the scenario-descriptor object. -- Abstract: Coping with unexpected events is an important issue of nuclear fusion experiments. The future machines, characterized by very long plasma discharges and actively cooled metallic plasma-facing components, will require a systematic intervention in real time, in order to maximize the performance and protect the investment. The real-time management of events will require extending the functionalities of the current pulse schedule editors with the possibility of using reference waveforms provided with acceptability margins and setting up advanced mitigation strategies and event countermeasures. With this purpose, a new pulse schedule editor, based on a time-segment approach for the preparation of experimental scenarios, is being conceived on Tore Supra, together with a new plasma control system. This paper will report on their conceptual design and give account of the preliminary results of a feasibility study currently under way in order to prepare a possible implementation on Tore Supra.

  14. The optimal design of stepped wedge trials with equal allocation to sequences and a comparison to other trial designs.

    Science.gov (United States)

    Thompson, Jennifer A; Fielding, Katherine; Hargreaves, James; Copas, Andrew

    2017-12-01

    Background/Aims We sought to optimise the design of stepped wedge trials with an equal allocation of clusters to sequences and explored sample size comparisons with alternative trial designs. Methods We developed a new expression for the design effect for a stepped wedge trial, assuming that observations are equally correlated within clusters and an equal number of observations in each period between sequences switching to the intervention. We minimised the design effect with respect to (1) the fraction of observations before the first and after the final sequence switches (the periods with all clusters in the control or intervention condition, respectively) and (2) the number of sequences. We compared the design effect of this optimised stepped wedge trial to the design effects of a parallel cluster-randomised trial, a cluster-randomised trial with baseline observations, and a hybrid trial design (a mixture of cluster-randomised trial and stepped wedge trial) with the same total cluster size for all designs. Results We found that a stepped wedge trial with an equal allocation to sequences is optimised by obtaining all observations after the first sequence switches and before the final sequence switches to the intervention; this means that the first sequence remains in the control condition and the last sequence remains in the intervention condition for the duration of the trial. With this design, the optimal number of sequences is [Formula: see text], where [Formula: see text] is the cluster-mean correlation, [Formula: see text] is the intracluster correlation coefficient, and m is the total cluster size. The optimal number of sequences is small when the intracluster correlation coefficient and cluster size are small and large when the intracluster correlation coefficient or cluster size is large. A cluster-randomised trial remains more efficient than the optimised stepped wedge trial when the intracluster correlation coefficient or cluster size is small. A

  15. A Numerical Simulation Of The Pulse Sequence Reconstruction in AC Biased TESs With a β Source

    International Nuclear Information System (INIS)

    Ferrari, Lorenza; Vaccarone, Renzo

    2009-01-01

    We study the response of micro-calorimeters based on Ir/Au TESs biased by an AC voltage in the MHz range to the power input generated by beta emission in a Re source thermally connected to the calorimeter itself. The micro-calorimeter is assumed to work at -80 mK, and the energy pulses corresponding to the beta emission have an energy distributed between zero and 2.58 KeV. In this numerical simulation the TES is inserted in a RLC resonating circuit, with a low quality factor. The thermal conductivities between the source and the calorimeter and that from the calorimeter to the heat sink are non-linear. The superconducting to normal transition of the TES is described by a realistic non-linear model. The AC current at the carrier frequency, modulated by the changing resistance of the TES, is demodulated and the output is filtered. The resulting signal is analyzed to deduce the attainable time resolution and the linearity of the response.

  16. Optical design and studies of a tiled single grating pulse compressor for enhanced parametric space and compensation of tiling errors

    Science.gov (United States)

    Daiya, D.; Patidar, R. K.; Sharma, J.; Joshi, A. S.; Naik, P. A.; Gupta, P. D.

    2017-04-01

    A new optical design of tiled single grating pulse compressor has been proposed, set-up and studied. The parametric space, i.e. the laser beam diameters that can be accommodated in the pulse compressor for the given range of compression lengths, has been calculated and shown to have up to two fold enhancement in comparison to our earlier proposed optical designs. The new optical design of the tiled single grating pulse compressor has an additional advantage of self compensation of various tiling errors like longitudinal and lateral piston, tip and groove density mismatch, compared to the earlier designs. Experiments have been carried out for temporal compression of 650 ps positively chirped laser pulses, at central wavelength 1054 nm, down to 235 fs in the tiled grating pulse compressor set up with the proposed design. Further, far field studies have been performed to show the desired compensation of the tiling errors takes place in the new compressor.

  17. Thirty-two phase sequences design with good autocorrelation ...

    Indian Academy of Sciences (India)

    mum peak aperiodic autocorrelation sidelobe level one are called Barker Sequences. ... the generation and processing of polyphase signals have now become easy ..... Cook C E, Bernfield M 1967 An introduction to theory and application.

  18. System engineering and design of a pulsed homopolar generator power supply for the Texas Experimental Tokamak

    International Nuclear Information System (INIS)

    Bird, W.L.; Grant, G.B.; Weldon, W.F.; Rylander, H.G.; Woodson, H.H.

    1977-01-01

    The design of a homopolar generator power supply for the Texas Experimental Tokamak (TEXT) is presented. Four series-connected disk type homopolar machines serve as inertial energy storage and conversion devices to supply 50 to 70 MW peak power to the toroidal field coil and ohmic heating coil circuits. The system is nominally operated at 150 MJ, 430 V to provide a 0.5 sec flat top, 160 kA TF current pulse and a 0.3 sec, 10 kA OH current pulse every 2.0 min on a continuous basis. The system has a maximum capacity of 200 MJ at a maximum open circuit voltage of 500 V. The homopolar machine design is described

  19. Computational Design of Short Pulse Laser Driven Iron Opacity Measurements at Stellar-Relevant Conditions

    Energy Technology Data Exchange (ETDEWEB)

    Martin, Madison E. [Univ. of Florida, Gainesville, FL (United States)

    2017-05-20

    Opacity is a critical parameter in the simulation of radiation transport in systems such as inertial con nement fusion capsules and stars. The resolution of current disagreements between solar models and helioseismological observations would bene t from experimental validation of theoretical opacity models. Overall, short pulse laser heated iron experiments reaching stellar-relevant conditions have been designed with consideration of minimizing tamper emission and optical depth effects while meeting plasma condition and x-ray emission goals.

  20. Design considerations for long-pulse, high-repetition-rate modulators for recirculating heavy-ion accelerators

    International Nuclear Information System (INIS)

    Newton, M.A.; Reginato, L.L.; Yu, S.S.

    1991-06-01

    Heavy-ion accelerators are considered to be one of the promising driver alternatives for inertial fusion. In an inertial fusion driver, multiple beams of heavy-ions are accelerated to kinetic energies consistent with the fusion target requirements. During acceleration, the beams of heavy ions are compressed in time from an initial pulse duration that range from 10's to 100's of microseconds to a final pulse duration of approximately 10 nanoseconds. The compressed beam of heavy ions is then focused on the target in a reactor chamber where the energy released from the fusion reaction is converted to thermal energy and eventually to electricity. A recirculator is an induction accelerator which accelerates the particles and bends them in a closed path with pulsed dipole magnets. A single beam traverses the same accelerating cavities many times (50--100) to acquire its final energy. The primary motivation to evaluate recirculators is the potential for low cost that results from re-using many of the most expensive accelerator components, such as the induction cells, pulsers, and focusing magnets, during an acceleration sequence. One of the areas of technology that is critical to the feasibility of a recirculator is the modulator system required to accelerate the ion beams. This system greatly impacts the overall design of the recirculating accelerator. System studies have been conducted to evaluate the cost and efficiency of several recirculator configurations as function of various parameters. These system studies have helped identify desirable induction cell driver characteristics. These characteristics and the trade-offs that were evaluated will be presented and discussed

  1. Simulating Metabolite Basis Sets for in vivo MRS Quantification; Incorporating details of the PRESS Pulse Sequence by means of the GAMMA C++ library

    NARCIS (Netherlands)

    Van der Veen, J.W.; Van Ormondt, D.; De Beer, R.

    2012-01-01

    In this work we report on generating/using simulated metabolite basis sets for the quantification of in vivo MRS signals, assuming that they have been acquired by using the PRESS pulse sequence. To that end we have employed the classes and functions of the GAMMA C++ library. By using several

  2. Criteria to average out the chemical shift anisotropy in solid-state NMR when irradiated with BABA I, BABA II, and C7 radiofrequency pulse sequences.

    Science.gov (United States)

    Stephane Mananga, Eugene

    2013-01-01

    Floquet-Magnus expansion is used to study the effect of chemical shift anisotropy in solid-state NMR of rotating solids. The chemical shift interaction is irradiated with two types of radiofrequency pulse sequences: BABA and C7. The criteria for the chemical shift anisotropy to be averaged out in each rotor period are obtained. Copyright © 2013 Elsevier Inc. All rights reserved.

  3. Calculation of anti-seismic design for Xi'an pulsed reactor

    International Nuclear Information System (INIS)

    Li Shuian

    2002-01-01

    The author describes the reactor safety rule, safety regulation and design code that must be observed to anti-seismic design in Xi'an pulsed reactor. It includes the classification of reactor installation, determination of seismic loads, calculate contents, program, method, results and synthetically evaluation. According to the different anti-seismic structure character of reactor installation, an appropriate method was selected to calculate the seismic response. The results were evaluated synthetically using the design code and design requirement. The evaluate results showed that the anti-seismic design function of reactor installation of Xi'an pules reactor is well, and the structure integrality and normal property of reactor installation can be protect under the designed classification of the earthquake

  4. Design and initial performance of the Sandia Pulsed Reactor-III

    International Nuclear Information System (INIS)

    Reuscher, J.A.; Estes, B.F.

    1976-01-01

    The Sandia Pulsed Reactor-III (SPR-III) is a new fast pulsed reactor which has recently undergone initial testing at Sandia Laboratories. SPR-III is a uranium-10 weight percent molybdenum fuel assembly with a 17.78 cm irradiation cavity similar in design to SPR-II which has been in operation since 1967. The basic SPR-III design utilizes the same split-core configuration which has been proven with SPR-II; however, SPR-III uses external reflectors for control and external bolts to hold the fuel plates together. The core consists of sixteen fuel plates with an inside diameter of 17.78 cm, an outside diameter of 29.72 cm, and a core height of 31.9 cm. The fuel mass is about 227 kg of fully enriched uranium-10 weight percent molybdenum alloy. SPR III has completed the initial series of startup tests which included the critical experiment, zero and low-power tests, and pulse testing. The reactor design and results from the initial testing program are described in this paper. A portion of the startup experiments with SPR-III have been completed and this paper discusses the more important aspects of the initial testing program

  5. Design of a Continuous Blood Pressure Measurement System Based on Pulse Wave and ECG Signals.

    Science.gov (United States)

    Li, Jian-Qiang; Li, Rui; Chen, Zhuang-Zhuang; Deng, Gen-Qiang; Wang, Huihui; Mavromoustakis, Constandinos X; Song, Houbing; Ming, Zhong

    2018-01-01

    With increasingly fierce competition for jobs, the pressures on people have risen in recent years, leading to lifestyle and diet disorders that result in significantly higher risks of cardiovascular disease. Hypertension is one of the common chronic cardiovascular diseases; however, mainstream blood pressure measurement devices are relatively heavy. When multiple measurements are required, the user experience and the measurement results may be unsatisfactory. In this paper, we describe the design of a signal collection module that collects pulse waves and electrocardiograph (ECG) signals. The collected signals are input into a signal processing module to filter the noise and amplify the useful physiological signals. Then, we use a wavelet transform to eliminate baseline drift noise and detect the feature points of the pulse waves and ECG signals. We propose the concept of detecting the wave shape associated with an instance, an approach that minimizes the impact of atypical pulse waves on blood pressure measurements. Finally, we propose an improved method for measuring blood pressure based on pulse wave velocity that improves the accuracy of blood pressure measurements by 58%. Moreover, the results meet the american medical instrument promotion association standards, which demonstrate the feasibility of our measurement system.

  6. A survey of pulse shape options for a revised plastic ablator ignition design

    Energy Technology Data Exchange (ETDEWEB)

    Clark, D. S.; Milovich, J. L.; Hinkel, D. E.; Salmonson, J. D.; Peterson, J. L.; Berzak Hopkins, L. F.; Eder, D. C.; Haan, S. W.; Jones, O. S.; Marinak, M. M.; Robey, H. F.; Smalyuk, V. A.; Weber, C. R. [Lawrence Livermore National Laboratory Livermore, California 94550 (United States)

    2014-11-15

    Recent experimental results using the “high foot” pulse shape for inertial confinement fusion ignition experiments on the National Ignition Facility (NIF) [Moses et al., Phys. Plasmas 16, 041006 (2009)] have shown encouraging progress compared to earlier “low foot” experiments. These results strongly suggest that controlling ablation front instability growth can significantly improve implosion performance even in the presence of persistent, large, low-mode distortions. Simultaneously, hydrodynamic growth radiography experiments have confirmed that ablation front instability growth is being modeled fairly well in NIF experiments. It is timely then to combine these two results and ask how current ignition pulse shapes could be modified to improve one-dimensional implosion performance while maintaining the stability properties demonstrated with the high foot. This paper presents such a survey of pulse shapes intermediate between the low and high foot extremes in search of an intermediate foot optimum. Of the design space surveyed, it is found that a higher picket version of the low foot pulse shape shows the most promise for improved compression without loss of stability.

  7. Optimal control design of turbo spin-echo sequences with applications to parallel-transmit systems

    NARCIS (Netherlands)

    Sbrizzi, Alessandro; Hoogduin, Hans; Hajnal, Joseph V; van den Berg, CAT; Luijten, Peter R; Malik, Shaihan J

    PURPOSE: The design of turbo spin-echo sequences is modeled as a dynamic optimization problem which includes the case of inhomogeneous transmit radiofrequency fields. This problem is efficiently solved by optimal control techniques making it possible to design patient-specific sequences online.

  8. FPGA-based design and implementation of arterial pulse wave generator using piecewise Gaussian-cosine fitting.

    Science.gov (United States)

    Wang, Lu; Xu, Lisheng; Zhao, Dazhe; Yao, Yang; Song, Dan

    2015-04-01

    Because arterial pulse waves contain vital information related to the condition of the cardiovascular system, considerable attention has been devoted to the study of pulse waves in recent years. Accurate acquisition is essential to investigate arterial pulse waves. However, at the stage of developing equipment for acquiring and analyzing arterial pulse waves, specific pulse signals may be unavailable for debugging and evaluating the system under development. To produce test signals that reflect specific physiological conditions, in this paper, an arterial pulse wave generator has been designed and implemented using a field programmable gate array (FPGA), which can produce the desired pulse waves according to the feature points set by users. To reconstruct a periodic pulse wave from the given feature points, a method known as piecewise Gaussian-cosine fitting is also proposed in this paper. Using a test database that contains four types of typical pulse waves with each type containing 25 pulse wave signals, the maximum residual error of each sampling point of the fitted pulse wave in comparison with the real pulse wave is within 8%. In addition, the function for adding baseline drift and three types of noises is integrated into the developed system because the baseline occasionally wanders, and noise needs to be added for testing the performance of the designed circuits and the analysis algorithms. The proposed arterial pulse wave generator can be considered as a special signal generator with a simple structure, low cost and compact size, which can also provide flexible solutions for many other related research purposes. Copyright © 2015 Elsevier Ltd. All rights reserved.

  9. Design and fabrication of an actively cooled Langmuir probe for long pulse applications

    International Nuclear Information System (INIS)

    Paterson, J.A.; Biagi, L.A.; Ehlers, K.W.; Koehler, G.W.

    1985-11-01

    The details of the mechanical design and fabrication for a Langmuir Probe for the continuous monitoring of plasma density are given. The probe was designed for use as a diagnostic tool in the development of long pulse positive ion plasma sources for use on neutral beam systems. The essential design feature of this probe is the incorporation of two electrically isolated cooling water circuits which actively cool the probe tip and probe jacket. The electrical isolation is required to prevent drain currents from the probe body disturbing the measurement of the probe tip current and thereby the plasma density measurement. The successful realization of the design requires precision components and vacuum tight ceramic to refractory metal brazes. To date this design has successfully operated in steady-state in plasma densities up to 250 mA/cm 2 and surface heat fluxes of 25 W/cm 2

  10. Deep sequencing methods for protein engineering and design.

    Science.gov (United States)

    Wrenbeck, Emily E; Faber, Matthew S; Whitehead, Timothy A

    2017-08-01

    The advent of next-generation sequencing (NGS) has revolutionized protein science, and the development of complementary methods enabling NGS-driven protein engineering have followed. In general, these experiments address the functional consequences of thousands of protein variants in a massively parallel manner using genotype-phenotype linked high-throughput functional screens followed by DNA counting via deep sequencing. We highlight the use of information rich datasets to engineer protein molecular recognition. Examples include the creation of multiple dual-affinity Fabs targeting structurally dissimilar epitopes and engineering of a broad germline-targeted anti-HIV-1 immunogen. Additionally, we highlight the generation of enzyme fitness landscapes for conducting fundamental studies of protein behavior and evolution. We conclude with discussion of technological advances. Copyright © 2016 Elsevier Ltd. All rights reserved.

  11. Comparison of multilocus sequence typing and pulsed-field gel electrophoresis for Salmonella spp. identification in surface water

    Science.gov (United States)

    Kuo, Chun Wei; Hao Huang, Kuan; Hsu, Bing Mu; Tsai, Hsien Lung; Tseng, Shao Feng; Kao, Po Min; Shen, Shu Min; Chou Chiu, Yi; Chen, Jung Sheng

    2013-04-01

    Salmonella is one of the most important pathogens of waterborne diseases with outbreaks from contaminated water reported worldwide. In addition, Salmonella spp. can survive for long periods in aquatic environments. To realize genotypes and serovars of Salmonella in aquatic environments, we isolated the Salmonella strains by selective culture plates to identify the serovars of Salmonella by serological assay, and identify the genotypes by Multilocus sequence typing (MLST) based on the sequence data from University College Cork (UCC), respectively. The results show that 36 stream water samples (30.1%) and 18 drinking water samples (23.3%) were confirmed the existence of Salmonella using culture method combined PCR specific invA gene amplification. In this study, 24 cultured isolates of Salmonella from water samples were classified to fifteen Salmonella enterica serovars. In addition, we construct phylogenetic analysis using phylogenetic tree and Minimum spanning tree (MST) method to analyze the relationship of clinical, environmental, and geographical data. Phylogenetic tree showed that four main clusters and our strains can be distributed in all. The genotypes of isolates from stream water are more biodiversity while comparing the Salmonella strains genotypes from drinking water sources. According to MST data, we can found the positive correlation between serovars and genotypes of Salmonella. Previous studies revealed that the result of Pulsed field gel electrophoresis (PFGE) method can predict the serovars of Salmonella strain. Hence, we used the MLST data combined phylogenetic analysis to identify the serovars of Salmonella strain and achieved effectiveness. While using the geographical data combined phylogenetic analysis, the result showed that the dominant strains were existed in whole stream area in rainy season. Keywords: Salmonella spp., MLST, phylogenetic analysis, PFGE

  12. Pulse sequence optimization for superparamagnetic iron oxide-enhaced MR imaging in the detection of hepatic VX2 tumors in rabbits

    International Nuclear Information System (INIS)

    Jang, Hyun Jung; Han, Joon Koo; Lee, Kyoung Ho; Kim, Se Hyung; Choi, Byung Ihn; Kim, Tae Kyoung

    2003-01-01

    The purpose of this experimental study was to determine the optimal pulse sequences for SPIO-enhanced MR imaging in the evaluation of multiple hepatic tumors. Twelve rabbits with multiple VX2 liver tumors underwent SPOI-enhanced MRI using the following nine pulse sequences: TSE T2-weighted imaging (T2W1), TSE proton density-weighted imaging(PDWI), and GRE T2*-weighted imaging (T2*W1) with seven different echo times (TE). Liver-lesion contrast-to-noise ratios (CNRs) were calculated, and images were also assessed qualitatively by two radiologists, who reached a consensus as to lesion conspicuity and imaging artifacts using a four-level scale. By means of pathologic correlation, the sensitivity and positive predictive value of each sequence was calculated. TSE T2W1 and long-TE (35 msec) FLASH T2*W1 showed the highest liver-lesion CNR. The best lesion conspicuity was seen at TSE T2W1 and medium-TE (12 msec) GRE T2*W1. Short TE GRE T2*W1 showed the least imaging artifacts. The four sequences which demonstrated the best sensitivity were medium-TE (12 msec), GRE T2*W1 (FLASH, 84%; FISP, 82%), TSE W2T1 (79%), and TSE PDWI (76%). All nine sequences showed overall high positive predictive value (86-97%), with no statistically significant difference (p>0.05). In terms of image quality and the detection of sensitivity, TSE T2W1 and medium TE (12 msec) GRE T2*W1 were the top two pulse sequences among the various sequences used for no SPIO-enhanced MRI. They are thus considered to be optimal sequences for evaluating multiple malignant hepatic tumors

  13. Evaluation of short repetition time, partial flip angle, gradient recalled echo pulse sequences in cervical spine imaging

    International Nuclear Information System (INIS)

    Enzmann, D.; Rubin, J.B.

    1987-01-01

    A short repetition time (TR), partial flip angle, gradient recalled echo pulse sequence (GRASS) was prospectively studied to optimize it for the diagnosis of cervical disk and cord disease in 98 patients. Changes in signal-to-noise ratio (SNR) and contrast were measured as the following parameters were varied: flip angle (3 0 to 18 0 ), TR (22-60 msec), and echo time (TE) (12.5-25 msec). Flip angle was the single most important parameter. For disk disease, cerebrospinal fluid (CSF) SNR peaked at an 8 0 flip angle in the axial view but at a 4 0 flip angle in the sagittal view. In the sagittal view, disk-CSF contrast decreased progressively from a flip angle of 3 0 , while in the axial view it peaked at 10 0 . For cord lesions the findings were similar except that lesion-cord contrast could be increased by lengthening both TR and TE. No one combination of parameters proved greatly superior for either disk disease or cord disease. The selection of parameters required balancing of several factors that often had opposing effects

  14. Optimized Design of Spacing in Pulsed Neutron Gamma Density Logging While Drilling

    Directory of Open Access Journals (Sweden)

    ZHANG Feng;HAN Zhong-yue;WU He;HAN Fei

    2016-10-01

    Full Text Available Radioactive source, used in traditional density logging, has great impact on the environment, while the pulsed neutron source applied in the logging tool is more safety and greener. In our country, the pulsed neutron-gamma density logging technology is still in the stage of development. Optimizing the parameters of neutron-gamma density instrument is essential to improve the measuring accuracy. This paper mainly studied the effects of spacing to typical neutron-gamma density logging tool which included one D-T neutron generator and two gamma scintillation detectors. The optimization of spacing were based on measuring sensitivity and counting statistic. The short spacing from 25 to 35 cm and long spacing from 60 to 65 cm were selected as the optimal position for near and far detector respectively. The result can provide theoretical support for design and manufacture of the instrument.

  15. Magnet Design and Analysis of a 40 Tesla Long Pulse System Energized by a Battery Bank

    Science.gov (United States)

    Lv, Y. L.; Peng, T.; Wang, G. B.; Ding, T. H.; Han, X. T.; Pan, Y.; Li, L.

    2013-03-01

    A 40 tesla long pulse magnet and a battery bank as the power supply have been designed. This is now under construction at the Wuhan National High Magnetic Field Center. The 22 mm bore magnet will generate smooth pulses with duration 1 s and rise time 0.5 s. The battery bank consists of 945 12V/200 Ah lead-acid battery cells. The magnet and battery bank were optimized by codes developed in-house and by ANSYS. The coil was made from soft copper with internal reinforcement by fiber-epoxy composite; it is divided into two sections connected in series. The inner section consists of helix coils with each layer reinforced by Zylon composite. The outer section will be wound from copper sheet and externally reinforced by carbon fiber composite.

  16. Design and Construction of a pulsed Nd:YAG laser for LIBS applications

    Science.gov (United States)

    Garcia-Villarreal, A.; Sobral, H.

    2015-01-01

    A multi-pulse Nd:YAG laser was designed and built, that can be used as an excitation source for Laser Induced Breakdown Spectroscopy (LIBS) experiments. A trigger and a power supply for the flash lamp has been successfully developed. A cooling system that uses a distilled water flow for the active medium was implemented. The laser has an output energy of 306 ± 7 mJ for 1 Hz repetition rate and its temporal profile is multi-pulse with 1 ps of average separation between them. To validate the system, the output was used as an ablation source of an aluminum target and the emission was investigated by spectroscopy analysis.

  17. An overview of the mechanical design of the Atlas pulsed power machine

    CERN Document Server

    Bowman, D W; Barr, G W; Bennett, G A; Cochrane, J C; Davis, H A; Davis, T O; Dorr, G; Gribble, R F; Griego, J R; Hood, M; Kimerly, H J; Martínez, A; McCuistian, B T; Miller, R B; Ney, S A; Nielsen, K; Pankuch, P; Parsons, W M; Potter, C; Ricketts, R L; Salazar, H R; Scudder, D W; Shapiro, C; Thompson, M C; Trainor, R J; Valdez, G A; Yonemoto, W; Kirbie, H C

    1999-01-01

    Atlas is a pulsed-power facility being designed at Los Alamos National Laboratory to perform high-energy density experiments in support of Science-Based Stockpile Stewardship and basic research programs. Atlas will consist of 24 individual maintenance units, each consisting of 4 240-kV Marx units. Maintenance units are contained in large oil tanks arrayed in a circle about a central target chamber. Total stored energy of the capacitor bank will be 23 MJ. Maintenance units will discharge through an output shorting switch into a vertical tri-plate transmission line, and from there into a transition area/collector inside a large vacuum chamber. An overview of mechanical design aspects of the Atlas machine is presented. These include maintenance unit design and design of the tri-plate transmission line and transition region. Findings from fabrication and testing of prototype systems are discussed. (2 refs).

  18. Status of the design concepts for a high fluence fast pulse reactor (HFFPR)

    International Nuclear Information System (INIS)

    Philbin, J.S.; Nelson, W.E.; Rosenstroch, B.

    1978-10-01

    The report describes progress that has been made on the design of a High Fluence Fast Pulse Reactor (HFFPR) through the end of calendar year 1977. The purpose of this study is to present design concepts for a test reactor capable of accommodating large scale reactor safety tests. These concepts for reactor safety tests are adaptations of reactor concepts developed earlier for DOE/OMA for the conduct of weapon effects tests. The preferred driver core uses fuel similar to that developed for Sandia's ACPR upgrade. It is a BeO/UO 2 fuel that is gas cooled and has a high volumetric heat capacity. The present version of the design can drive large (217) pin bundles of prototypically enriched mixed oxide fuel well beyond the fuel's boiling point. Applicability to specific reactor safety accident scenarios and subsequent design improvements will be presented in future reports on this subject

  19. The Design of Nanosecond Fast-switch Pulsed High Voltage Power Supply Based on Solid-state

    International Nuclear Information System (INIS)

    Chen Wenguang; Chen Wei; Rao Yihua

    2009-01-01

    The high voltage pulsed power supply is applied in the experiment of the nuclear science widely. It main consist of DC high-voltage power supply (HVPS) and pulse modulator. The high-frequency series-resonant inverter technology and IGBT series technology are used to design the HVPS and the modulator, respectively. The main circuit, control circuit, high voltage transformer and solid-state switch are illuminated in the paper. The apparatus can operate at a maximum output voltage of 6 kilovolt, which can be modulated single pulse and also be modulated by series pulse. A prototype is fabricated and tested, experimental results show that the pulsed power supply is well-designed and rising edge time to meet the nsclass; it can achieve the requirement of rapid modulation. (authors)

  20. Decentralization, Interdependence and Performance Measurement System Design : Sequences and Priorities

    NARCIS (Netherlands)

    Abernethy, M.; Bouwens, J.F.M.G.; van Lent, L.A.G.M.

    2001-01-01

    We investigate the determinants of decentralization and performance measurement choices in multidivisional firms.We extend the research on the economics of organizational design choices by examining the impact of two important determinants of those choices, namely, subunit interdependencies and

  1. Fpga based L-band pulse doppler radar design and implementation

    Science.gov (United States)

    Savci, Kubilay

    As its name implies RADAR (Radio Detection and Ranging) is an electromagnetic sensor used for detection and locating targets from their return signals. Radar systems propagate electromagnetic energy, from the antenna which is in part intercepted by an object. Objects reradiate a portion of energy which is captured by the radar receiver. The received signal is then processed for information extraction. Radar systems are widely used for surveillance, air security, navigation, weather hazard detection, as well as remote sensing applications. In this work, an FPGA based L-band Pulse Doppler radar prototype, which is used for target detection, localization and velocity calculation has been built and a general-purpose Pulse Doppler radar processor has been developed. This radar is a ground based stationary monopulse radar, which transmits a short pulse with a certain pulse repetition frequency (PRF). Return signals from the target are processed and information about their location and velocity is extracted. Discrete components are used for the transmitter and receiver chain. The hardware solution is based on Xilinx Virtex-6 ML605 FPGA board, responsible for the control of the radar system and the digital signal processing of the received signal, which involves Constant False Alarm Rate (CFAR) detection and Pulse Doppler processing. The algorithm is implemented in MATLAB/SIMULINK using the Xilinx System Generator for DSP tool. The field programmable gate arrays (FPGA) implementation of the radar system provides the flexibility of changing parameters such as the PRF and pulse length therefore it can be used with different radar configurations as well. A VHDL design has been developed for 1Gbit Ethernet connection to transfer digitized return signal and detection results to PC. An A-Scope software has been developed with C# programming language to display time domain radar signals and detection results on PC. Data are processed both in FPGA chip and on PC. FPGA uses fixed

  2. Design and development of micro pulse lidar for cloud and aerosol studies

    Science.gov (United States)

    Dubey, P. K.; Arya, B. C.; Ahammed, Y. Nazeer; Kumar, Arun; Kulkarni, P. S.; Jain, S. L.

    2008-12-01

    A micro pulse lidar (MPL) has been indigenously designed and developed at the National Physical Laboratory, New Delhi using a 532 nm, 500 pico second pulsed laser having average power of 50mW (at 7.5 KHz PRR). Photon counting technique has been incorporated using the conventional optics, multichannel scaler (Stanford Research Systems SR430) and high sensitive photomultiplier tube. The sensitivity, range and bin etc are computer controlled in the present system. The interfacing between MPL and computer has been achieved by serial (RS232) and parallel printer port. The necessary software and graphical user interface has been developed using visual basic. In addition to this the telescope cover status sensing circuit has been incorporated to avoid conflict between dark count and background acquisition. The micro pulse lidar will be used for the aerosol, boundary layer and the cloud studies at a bin resolution of 6 meters. In the present communication the details of the system and preliminary results will be presented.

  3. PULSE COMBUSTOR DESIGN QUALIFICATION TEST AND CLEAN COAL FEEDSTOCK TEST - VOLUME I AND VOLUME II; FINAL

    International Nuclear Information System (INIS)

    Unknown

    2002-01-01

    For this Cooperative Agreement, the pulse heater module is the technology envelope for an indirectly heated steam reformer. The field of use of the steam reformer pursuant to this Cooperative Agreement with DOE is for the processing of sub-bituminous coals and lignite. The main focus is the mild gasification of such coals for the generation of both fuel gas and char-for the steel industry is the main focus. An alternate market application for the substitution of metallurgical coke is also presented. This project was devoted to qualification of a 253-tube pulse heater module. This module was designed, fabricated, installed, instrumented and tested in a fluidized bed test facility. Several test campaigns were conducted. This larger heater is a 3.5 times scale-up of the previous pulse heaters that had 72 tubes each. The smaller heater has been part of previous pilot field testing of the steam reformer at New Bern, North Carolina. The project also included collection and reduction of mild gasification process data from operation of the process development unit (PDU). The operation of the PDU was aimed at conditions required to produce char (and gas) for the Northshore Steel Operations. Northshore Steel supplied the coal for the process unit tests

  4. Design and characterization of a small multipurpose capacitor bank for plasma physics and pulsed power experiments

    International Nuclear Information System (INIS)

    Tarifeno, Ariel; Pavez, Cristian; Soto, Leopoldo

    2008-01-01

    Pulsed power technologies essentially refer to power sources providing a huge amount of energy during very short times. These technologies have applications in several fields of science and engineering: production of transient electrical discharges and plasmas, generation of radiation and ion beams, high density matter, production of pulsed high magnetic fields and shock waves. The achievements of these fields are relevant for several economical and industrial areas: electronics, microlithography, mining, medicine, agriculture, defense, materials, among others. In the present work, the design and construction of a small capacitor bank conceived for carrying out a variety of research activities are presented. The main features of this system are 1.2 μF of capacity, 30 kV maximum charge voltage, 33 nH inductance, 500 J of energy, 180 kA at the peak of current and dI/dt∼10 11 A s -1 . The procedure and results related to the characterization of the capacitor bank are presented. Possible applications of this capacitor bank to scaling studies related to plasma focus and Z-pinch, high pulsed magnetic field generation and rock fragmentation by electrical discharges are mentioned.

  5. PULSE COMBUSTOR DESIGN QUALIFICATION TEST AND CLEAN COAL FEEDSTOCK TEST - VOLUME I AND VOLUME II

    Energy Technology Data Exchange (ETDEWEB)

    Unknown

    2002-02-08

    For this Cooperative Agreement, the pulse heater module is the technology envelope for an indirectly heated steam reformer. The field of use of the steam reformer pursuant to this Cooperative Agreement with DOE is for the processing of sub-bituminous coals and lignite. The main focus is the mild gasification of such coals for the generation of both fuel gas and char--for the steel industry is the main focus. An alternate market application for the substitution of metallurgical coke is also presented. This project was devoted to qualification of a 253-tube pulse heater module. This module was designed, fabricated, installed, instrumented and tested in a fluidized bed test facility. Several test campaigns were conducted. This larger heater is a 3.5 times scale-up of the previous pulse heaters that had 72 tubes each. The smaller heater has been part of previous pilot field testing of the steam reformer at New Bern, North Carolina. The project also included collection and reduction of mild gasification process data from operation of the process development unit (PDU). The operation of the PDU was aimed at conditions required to produce char (and gas) for the Northshore Steel Operations. Northshore Steel supplied the coal for the process unit tests.

  6. ASPUN: design for an Argonne super-intense pulsed neutron source

    International Nuclear Information System (INIS)

    Khoe, T.K.; Kustom, R.L.

    1983-01-01

    Argonne pioneered the pulsed spallation neutron source with the ZING-P and IPNS-I concepts. IPNS-I is now a reliable and actively used source for pulsed spallation neutrons. The accelerator is a 500-MeV, 8 to 9 μa, 30-Hz rapid-cycling proton synchrotron. Other proton spallation sources are now in operation or in construction. These include KENS-I at the National Laboratory for High Energy Physics in Japan, the WNR/PSR at Los Alamos National Laboratory in the USA, and the SNS at the Rutherford Appleton Laboratory in England. Newer and bolder concepts are being developed for more-intense pulsed spallation neutron sources. These include SNQ at the KFA Laboratory in Juelich, Germany, ASTOR at the Swiss Institute for Nuclear Physics in Switzerland, and ASPUN, the Argonne concept. ASPUN is based on the Fixed-Field Alternating Gradient concept. The design goal is to provide a time-averaged beam of 3.5 ma at 1100 MeV on a spallation target in intense bursts, 100 to 200 nanoseconds long, at a repetition rate of no more than 60 to 85 Hz

  7. Design of double-fed control system for J-TEXT 100 MVA pulse generator unit

    International Nuclear Information System (INIS)

    Fang, Jianming; Yu, Kexun; Zhang, Ming; Zhuang, Ge; Xiao, Zhiguo; Jiang, Guozhong; Yang, Cheng; Xu, Jiayu

    2013-01-01

    Highlights: ► A double-fed control system is designed for J-TEXT 100 MVA pulse generator unit. ► The double-fed system can control the motor speed and reactive power individually. ► Experiment on a prototype motor shows a good control result. -- Abstract: The 100 MVA pulse generator unit is the main power supply of J-TEXT. This unit supplies energy for the toroidal coil, the ohmic heat coil and the divertor coil, with the maximum stored energy 185 MJ. For the difference of grid frequency between China and USA, the rotational speed and stored energy of this unit are less than the designed value. A double-fed control system for the unit is designed to raise them. This double-fed system has applied a control method using a rotational reference frame oriented by stator flux. With this control system, the speed and reactive power of motor could be controlled individually. Experiments on a prototype motor show a good control result

  8. Design of 6 Mev linear accelerator based pulsed thermal neutron source: FLUKA simulation and experiment

    Energy Technology Data Exchange (ETDEWEB)

    Patil, B.J., E-mail: bjp@physics.unipune.ac.in [Department of Physics, University of Pune, Pune 411 007 (India); Chavan, S.T.; Pethe, S.N.; Krishnan, R. [SAMEER, IIT Powai Campus, Mumbai 400 076 (India); Bhoraskar, V.N. [Department of Physics, University of Pune, Pune 411 007 (India); Dhole, S.D., E-mail: sanjay@physics.unipune.ac.in [Department of Physics, University of Pune, Pune 411 007 (India)

    2012-01-15

    The 6 MeV LINAC based pulsed thermal neutron source has been designed for bulk materials analysis. The design was optimized by varying different parameters of the target and materials for each region using FLUKA code. The optimized design of thermal neutron source gives flux of 3 Multiplication-Sign 10{sup 6}ncm{sup -2}s{sup -1} with more than 80% of thermal neutrons and neutron to gamma ratio was 1 Multiplication-Sign 10{sup 4}ncm{sup -2}mR{sup -1}. The results of prototype experiment and simulation are found to be in good agreement with each other. - Highlights: Black-Right-Pointing-Pointer The optimized 6 eV linear accelerator based thermal neutron source using FLUKA simulation. Black-Right-Pointing-Pointer Beryllium as a photonuclear target and reflector, polyethylene as a filter and shield, graphite as a moderator. Black-Right-Pointing-Pointer Optimized pulsed thermal neutron source gives neutron flux of 3 Multiplication-Sign 10{sup 6} n cm{sup -2} s{sup -1}. Black-Right-Pointing-Pointer Results of the prototype experiment were compared with simulations and are found to be in good agreement. Black-Right-Pointing-Pointer This source can effectively be used for the study of bulk material analysis and activation products.

  9. Design of a long pulse and low drift analog integrator in HT-7

    International Nuclear Information System (INIS)

    Liu Dongmei; Wan Baonian; Shen Biao

    2007-01-01

    Magnetic measurements are a fundamental diagnostic system for Tokamak. Inductive magnetic coils are used on HT-7. So the integrator is required to determine the magnetic field strength. This paper discusses the traditional analog integrator, and introduces a new integrator based on real-time drift compensation schemes. This new design can significantly reduce the integral error caused by input offset, temperature-induced drift, noise and so on. Operation in the HT-7 Tokamak shows that very low drift and noise characteristics compatible of the now integrators can meet requirement of long pulse discharges. (authors)

  10. CSReport: A New Computational Tool Designed for Automatic Analysis of Class Switch Recombination Junctions Sequenced by High-Throughput Sequencing.

    Science.gov (United States)

    Boyer, François; Boutouil, Hend; Dalloul, Iman; Dalloul, Zeinab; Cook-Moreau, Jeanne; Aldigier, Jean-Claude; Carrion, Claire; Herve, Bastien; Scaon, Erwan; Cogné, Michel; Péron, Sophie

    2017-05-15

    B cells ensure humoral immune responses due to the production of Ag-specific memory B cells and Ab-secreting plasma cells. In secondary lymphoid organs, Ag-driven B cell activation induces terminal maturation and Ig isotype class switch (class switch recombination [CSR]). CSR creates a virtually unique IgH locus in every B cell clone by intrachromosomal recombination between two switch (S) regions upstream of each C region gene. Amount and structural features of CSR junctions reveal valuable information about the CSR mechanism, and analysis of CSR junctions is useful in basic and clinical research studies of B cell functions. To provide an automated tool able to analyze large data sets of CSR junction sequences produced by high-throughput sequencing (HTS), we designed CSReport, a software program dedicated to support analysis of CSR recombination junctions sequenced with a HTS-based protocol (Ion Torrent technology). CSReport was assessed using simulated data sets of CSR junctions and then used for analysis of Sμ-Sα and Sμ-Sγ1 junctions from CH12F3 cells and primary murine B cells, respectively. CSReport identifies junction segment breakpoints on reference sequences and junction structure (blunt-ended junctions or junctions with insertions or microhomology). Besides the ability to analyze unprecedentedly large libraries of junction sequences, CSReport will provide a unified framework for CSR junction studies. Our results show that CSReport is an accurate tool for analysis of sequences from our HTS-based protocol for CSR junctions, thereby facilitating and accelerating their study. Copyright © 2017 by The American Association of Immunologists, Inc.

  11. Rational design of DNA sequences for nanotechnology, microarrays and molecular computers using Eulerian graphs.

    Science.gov (United States)

    Pancoska, Petr; Moravek, Zdenek; Moll, Ute M

    2004-01-01

    Nucleic acids are molecules of choice for both established and emerging nanoscale technologies. These technologies benefit from large functional densities of 'DNA processing elements' that can be readily manufactured. To achieve the desired functionality, polynucleotide sequences are currently designed by a process that involves tedious and laborious filtering of potential candidates against a series of requirements and parameters. Here, we present a complete novel methodology for the rapid rational design of large sets of DNA sequences. This method allows for the direct implementation of very complex and detailed requirements for the generated sequences, thus avoiding 'brute force' filtering. At the same time, these sequences have narrow distributions of melting temperatures. The molecular part of the design process can be done without computer assistance, using an efficient 'human engineering' approach by drawing a single blueprint graph that represents all generated sequences. Moreover, the method eliminates the necessity for extensive thermodynamic calculations. Melting temperature can be calculated only once (or not at all). In addition, the isostability of the sequences is independent of the selection of a particular set of thermodynamic parameters. Applications are presented for DNA sequence designs for microarrays, universal microarray zip sequences and electron transfer experiments.

  12. Circuit designs for measuring reactor period, peak power, and pulse fluence on TRIGA and other pulse reactor

    International Nuclear Information System (INIS)

    Meyer, R.D.; Thome, F.V.; Williams, R.L.

    1976-01-01

    Inexpensive circuits for use in evaluating reactor pulse prompt period, peak power, and pulse fluence (NVT) are presented. In addition to low cost, these circuits are easily assembled and calibrated and operate with a high degree of accuracy. The positive period measuring system has been used in evaluating reactivity additions as small as 5 cents (with an accuracy of ±0.1 cents) and as large as $4.50 (accuracy ±2 cents). Reactor peak power is measured digitally with a system accuracy of ±0.04% of a 10 Volt input (±4 mV). The NVT circuit measures over a 2-1/2 decade range, has 3 place resolution and an accuracy of better than 1%. (author)

  13. Improvisation Planning and Jam Session Design using concepts of Sequence Variation and Flow Experience

    OpenAIRE

    Dubnov , Shlomo; Assayag , Gérard

    2005-01-01

    cote interne IRCAM: Assayag05a; National audience; We describe a model for improvisation design based on Factor Oracle automation, which is extended to perform learning and analysis of incoming sequences in terms of sequence variation parameters, namely replication, recombination and innovation. These parameters describe the improvisation plan and allow the design of new improvisations or analysis and modification of plans of existing improvisations. We further introduce an idea of flow exper...

  14. Optimal design of waveform digitisers for both energy resolution and pulse shape discrimination

    Science.gov (United States)

    Cang, Jirong; Xue, Tao; Zeng, Ming; Zeng, Zhi; Ma, Hao; Cheng, Jianping; Liu, Yinong

    2018-04-01

    Fast digitisers and digital pulse processing have been widely used for spectral application and pulse shape discrimination (PSD) owing to their advantages in terms of compactness, higher trigger rates, offline analysis, etc. Meanwhile, the noise of readout electronics is usually trivial for organic, plastic, or liquid scintillator with PSD ability because of their poor intrinsic energy resolution. However, LaBr3(Ce) has been widely used for its excellent energy resolution and has been proven to have PSD ability for alpha/gamma particles. Therefore, designing a digital acquisition system for such scintillators as LaBr3(Ce) with both optimal energy resolution and promising PSD ability is worthwhile. Several experimental research studies about the choice of digitiser properties for liquid scintillators have already been conducted in terms of the sampling rate and vertical resolution. Quantitative analysis on the influence of waveform digitisers, that is, fast amplifier (optional), sampling rates, and vertical resolution, on both applications is still lacking. The present paper provides quantitative analysis of these factors and, hence, general rules about the optimal design of digitisers for both energy resolution and PSD application according to the noise analysis of time-variant gated charge integration.

  15. Statistical and Machine-Learning Classifier Framework to Improve Pulse Shape Discrimination System Design

    Energy Technology Data Exchange (ETDEWEB)

    Wurtz, R. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Kaplan, A. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2015-10-28

    Pulse shape discrimination (PSD) is a variety of statistical classifier. Fully-­realized statistical classifiers rely on a comprehensive set of tools for designing, building, and implementing. PSD advances rely on improvements to the implemented algorithm. PSD advances can be improved by using conventional statistical classifier or machine learning methods. This paper provides the reader with a glossary of classifier-­building elements and their functions in a fully-­designed and operational classifier framework that can be used to discover opportunities for improving PSD classifier projects. This paper recommends reporting the PSD classifier’s receiver operating characteristic (ROC) curve and its behavior at a gamma rejection rate (GRR) relevant for realistic applications.

  16. Optimized Controller Design for a 12-Pulse Voltage Source Converter Based HVDC System

    Science.gov (United States)

    Agarwal, Ruchi; Singh, Sanjeev

    2017-12-01

    The paper proposes an optimized controller design scheme for power quality improvement in 12-pulse voltage source converter based high voltage direct current system. The proposed scheme is hybrid combination of golden section search and successive linear search method. The paper aims at reduction of current sensor and optimization of controller. The voltage and current controller parameters are selected for optimization due to its impact on power quality. The proposed algorithm for controller optimizes the objective function which is composed of current harmonic distortion, power factor, and DC voltage ripples. The detailed designs and modeling of the complete system are discussed and its simulation is carried out in MATLAB-Simulink environment. The obtained results are presented to demonstrate the effectiveness of the proposed scheme under different transient conditions such as load perturbation, non-linear load condition, voltage sag condition, and tapped load fault under one phase open condition at both points-of-common coupling.

  17. Library Design-Facilitated High-Throughput Sequencing of Synthetic Peptide Libraries.

    Science.gov (United States)

    Vinogradov, Alexander A; Gates, Zachary P; Zhang, Chi; Quartararo, Anthony J; Halloran, Kathryn H; Pentelute, Bradley L

    2017-11-13

    A methodology to achieve high-throughput de novo sequencing of synthetic peptide mixtures is reported. The approach leverages shotgun nanoliquid chromatography coupled with tandem mass spectrometry-based de novo sequencing of library mixtures (up to 2000 peptides) as well as automated data analysis protocols to filter away incorrect assignments, noise, and synthetic side-products. For increasing the confidence in the sequencing results, mass spectrometry-friendly library designs were developed that enabled unambiguous decoding of up to 600 peptide sequences per hour while maintaining greater than 85% sequence identification rates in most cases. The reliability of the reported decoding strategy was additionally confirmed by matching fragmentation spectra for select authentic peptides identified from library sequencing samples. The methods reported here are directly applicable to screening techniques that yield mixtures of active compounds, including particle sorting of one-bead one-compound libraries and affinity enrichment of synthetic library mixtures performed in solution.

  18. The influence of wavelength, temporal sequencing, and pulse duration on resonant infrared matrix-assisted laser processing of polymer films

    Science.gov (United States)

    O'Malley, S. M.; Schoeffling, Jonathan; Jimenez, Richard; Zinderman, Brian; Yi, SunYong; Bubb, D. M.

    2014-06-01

    We have carried out a systematic investigation of laser ablation plume interactions in resonant infrared matrix-assisted pulsed laser evaporation. The laser source utilized in this study was a mid-infrared OPO capable of dual sequential ns pulses with adjustable delay ranging from 1 to 100 μs. This unique capability enabled us both to probe the ablation plume with a second laser pulse, and to effectively double the laser fluence. The primary ablation target used for this study consisted of poly(methyl methacrylate) dissolved in a binary mixture of methanol and toluene. Both the critical thermodynamic and optical properties of the binary mixture were determined and used to interpret our results. We found that deposition rates associated with single pulse irradiation tracks with the optical absorption coefficient in the spectral range from 2,700 to 3,800 nm. In the case of dual sequential pulses, discrepancies in this trend have been linked to the rate of change in the optical absorption coefficient with temperature. The influence of fluence on deposition rate was found to follow a sigmoidal dependence. Surface roughness was observed to have a diametrically opposed trend with pulse delay depending on whether the OH or CH vibrational mode was excited. In the case of CH excitation, we suggest that the rougher films are due to the absorbance of the second pulse by droplets within the plume containing residual solvent which leads to the formation of molecular balloons and hence irregularly shaped features on the substrate.

  19. A design study of a 100 MeV race-track microtron/pulse-stretcher accelerator system

    International Nuclear Information System (INIS)

    Alvinsson, R.; Eriksson, M.

    1976-04-01

    A proposed design of an accelerator system with large duty-factor is described. The system is composed of a race-track microtron and a pulse-stretcher. The maximum particle energy is 100 MeV and the beam current is estimated to be up to 10 μA within +- 100 keV. The intended use is mainly for nuclear physics experiments with high precision, where the combination of large mean current and limited pulse intensity is essential. (Auth.)

  20. Design of an Inductive Adder for the FCC injection kicker pulse generator

    Science.gov (United States)

    Woog, D.; Barnes, M. J.; Ducimetière, L.; Holma, J.; Kramer, T.

    2017-07-01

    The injection system for a 100 TeV centre-of-mass collider is an important part of the Future Circular Collider (FCC) study. Due to issues with conventional kicker systems, such as self-triggering and long term availability of thyratrons and limitations of HV-cables, innovative design changes are planned for the FCC injection kicker pulse generator. An inductive adder (IA) based on semiconductor (SC) switches is a promising technology for kicker systems. Its modular design, and the possibility of an active ripple suppression are significant advantages. Since the IA is a complex device, with multiple components whose characteristics are important, a detailed design study and construction of a prototype is necessary. This paper summarizes the system requirements and constraints, and describes the main components and design challenges of the prototype IA. It outlines the results from simulations and measurements on different magnetic core materials as well as on SC switches. The paper concludes on the design choices and progress for the prototype to be built at CERN.

  1. Design and simulation of fast pulsed kicker/bumper units for the positron accumulator ring at APS

    International Nuclear Information System (INIS)

    Wang, Ju; Volk, G.J.

    1991-01-01

    In the design of fast pulsed kicker/burner units for a positron accumulator ring (PAR) at APS, different pulse forming networks (PFN) are considered and different structures for the magnet are studied and simulated. Three fast pulsed kicker/bumper magnets are required in PAR for the beam injection and/or extraction at 450 MeV. These magnets have the same design because they have identical specifications and are expected to produce identical magnetic fields. Each kicker/bumper magnet is required to generate a magnetic field of 0.06 T with rise-time of 80 ns, a flat-top of 80 ns and a fall-time of 80 ns. This paper describes some design considerations and computer simulation results of different designs

  2. Development of Design Information Template for Nuclear Power Plants for Electromagnetic Pulse (EMP) Effect Analysis

    International Nuclear Information System (INIS)

    Kim, Minyi; Ryu, Hosan; Ye, Songhae; Lee, Euijong

    2016-01-01

    An electromagnetic pulse (EMP) is a transient electromagnetic shock wave that has powerful electric and magnetic fields that can destroy electronic equipment. It is generally well-known that EMPs can cause the malfunction and disorder of electronic equipment and serious damages to electric power systems and communication networks. Research is being carried out to protect nuclear power plants (NPPs) from EMP threats. Penetration routes of EMPs can be roughly categorized into two groups, radioactivity and conductivity. The radioactive effect refers to an impact transmitted to the ground from high-altitude electromagnetic pulses (HEMP). Such an impact may affect target equipment through the point of entry (POE) of the concrete structure of an NPP. The conductive effect refers to induced voltage or current coupled to the NPPs cable structure. The induced voltage and current affect the target equipment via connected cables. All these factors must be considered when taking into account EMP effect analysis for NPPs. To examine all factors, it is necessary to fully understand the schemes of NPPs. This paper presents a four type design information template that can be used to analyze the EMP effect in operating nuclear power plants. In order to analyze of the effects of EMPs on operating NPPs, we must consider both the conductive and radioactive effects on the target (system, equipment, structure). For these reasons, not only the equipment information, but also the information about the structure and the external penetration will be required. We are developing a design information template for robust nuclear design information acquisition. We expect to develop a block diagram on the basis of the template

  3. Development of Design Information Template for Nuclear Power Plants for Electromagnetic Pulse (EMP) Effect Analysis

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Minyi; Ryu, Hosan; Ye, Songhae; Lee, Euijong [KNHP CRI, Daejeon (Korea, Republic of)

    2016-10-15

    An electromagnetic pulse (EMP) is a transient electromagnetic shock wave that has powerful electric and magnetic fields that can destroy electronic equipment. It is generally well-known that EMPs can cause the malfunction and disorder of electronic equipment and serious damages to electric power systems and communication networks. Research is being carried out to protect nuclear power plants (NPPs) from EMP threats. Penetration routes of EMPs can be roughly categorized into two groups, radioactivity and conductivity. The radioactive effect refers to an impact transmitted to the ground from high-altitude electromagnetic pulses (HEMP). Such an impact may affect target equipment through the point of entry (POE) of the concrete structure of an NPP. The conductive effect refers to induced voltage or current coupled to the NPPs cable structure. The induced voltage and current affect the target equipment via connected cables. All these factors must be considered when taking into account EMP effect analysis for NPPs. To examine all factors, it is necessary to fully understand the schemes of NPPs. This paper presents a four type design information template that can be used to analyze the EMP effect in operating nuclear power plants. In order to analyze of the effects of EMPs on operating NPPs, we must consider both the conductive and radioactive effects on the target (system, equipment, structure). For these reasons, not only the equipment information, but also the information about the structure and the external penetration will be required. We are developing a design information template for robust nuclear design information acquisition. We expect to develop a block diagram on the basis of the template.

  4. High-voltage Pulse-triggered SR Latch Level-Shifter Design Considerations

    DEFF Research Database (Denmark)

    Larsen, Dennis Øland; Llimos Muntal, Pere; Jørgensen, Ivan Harald Holger

    2014-01-01

    translating a signal from 0- 3 : 3 V to 87 : 5 - 100 V. The operation of this level-shifter is verified with measurements on a fabricated chip. The shortcomings of the implemented level-shifter in terms of power dissipation, transition delay, area, and startup behavior are then considered and an improved......This paper compares pulse-triggered level shifters with a traditional level-triggered topology for high-voltage ap- plications with supply voltages in the 50 V to 100 V range. It is found that the pulse-triggered SR (Set/Reset) latch level- shifter has a superior power consumption of 1800 W = MHz...... circuit is suggested which has been designed in three variants being able to translate the low-voltage 0- 3 : 3 V signal to 45 - 50 V, 85 - 90 V, and 95 - 100 V respectively. The improved 95 - 100 V level shifter achieves a considerably lower power consumption of 438 W = MHz along with a significantly...

  5. Design of long pulse/steady state negative hydrogen ion sources for fusion applications

    International Nuclear Information System (INIS)

    Prelec, K.

    1980-01-01

    By using parameters of ion sources when operating in a pulsed mode and without cooling (pulse length 2 . For the range of cathode power densities between 0.2 kW/cm 2 and 1 Kw/cm 2 , nucleated boiling has to be used for heat removal; below 0.2 kW/cm 2 water flow cooling suffices. Although this source should deliver 0.3 to 0.5 A of H - ions in a steady state operation and at full power, the other source, which has a magnetron geometry, is more promising. The latter incorporates two new features compared to first designs, geometrical focusing of fast, primary negative hydrogen ions from the cathode into the extraction slit, and a wider discharge gap in the back of the source. These two changes have resulted in an improvement of the power and gas efficiencies by a factor of 3 to 4 and in a reduction of the cathode power density by an order of magnitude. The source has water cooling for all the electrodes, because maximum power densities will not be higher than 0.2 kW/cm 2 . Very recently a modification of this magnetron source is being considered; it consists of plasma injection into the source from a hollow cathode discharge

  6. One-dimensional "atom" with zero-range potential perturbed by finite sequence of zero-duration laser pulses

    Science.gov (United States)

    Gusev, A. A.; Chuluunbaatar, O.; Popov, Yu. V.; Vinitsky, S. I.; Derbov, V. L.; Lovetskiy, K. P.

    2018-04-01

    The exactly soluble model of a train of zero-duration electromagnetic pulses interacting with a 1D atom with short-range interaction potential modelled by a δ-function is considered. The model is related to the up-to-date laser techniques providing the duration of pulses as short as a few attoseconds and the intensities higher than 1014 W/cm2.

  7. Designing of deployment sequence for braking and drift systems in atmosphere of Mars and Venus

    Science.gov (United States)

    Vorontsov, Victor

    2006-07-01

    Analysis of project development and space research using contact method, namely, by means of automatic descent modules and balloons shows that designing formation of entry, descent and landing (EDL) sequence and operation in the atmosphere are of great importance. This process starts at the very beginning of designing, has undergone a lot of iterations and influences processing of normal operation results. Along with designing of descent module systems, including systems of braking in the atmosphere, designing of flight operation sequence and trajectories of motion in the atmosphere is performed. As the entire operation sequence and transfer from one phase to another was correctly chosen, the probability of experiment success on the whole and efficiency of application of various systems vary. By now the most extensive experience of Russian specialists in research of terrestrial planets has been gained with the help of automatic interplanetary stations “Mars”, “Venera”, “Vega” which had descent modules and drifting in the atmosphere balloons. Particular interest and complicity of formation of EDL and drift sequence in the atmosphere of these planets arise from radically different operation conditions, in particular, strongly rarefied atmosphere of the one planet and extremely dense atmosphere of another. Consequently, this determines the choice of braking systems and their parameters and method of EDL consequence formation. At the same time there are general fundamental methods and designed research techniques that allowed taking general technical approach to designing of EDL and drift sequence in the atmosphere.

  8. Designing Pulse Laser Surface Modification of H13 Steel Using Response Surface Method

    Science.gov (United States)

    Aqida, S. N.; Brabazon, D.; Naher, S.

    2011-01-01

    This paper presents a design of experiment (DOE) for laser surface modification process of AISI H13 tool steel in achieving the maximum hardness and minimum surface roughness at a range of modified layer depth. A Rofin DC-015 diffusion-cooled CO2 slab laser was used to process AISI H13 tool steel samples. Samples of 10 mm diameter were sectioned to 100 mm length in order to process a predefined circumferential area. The parameters selected for examination were laser peak power, overlap percentage and pulse repetition frequency (PRF). The response surface method with Box-Behnken design approach in Design Expert 7 software was used to design the H13 laser surface modification process. Metallographic study and image analysis were done to measure the modified layer depth. The modified surface roughness was measured using two-dimensional surface profilometer. The correlation of the three laser processing parameters and the modified surface properties was specified by plotting three-dimensional graph. The hardness properties were tested at 981 mN force. From metallographic study, the laser modified surface depth was between 37 μm and 150 μm. The average surface roughness recorded from the 2D profilometry was at a minimum value of 1.8 μm. The maximum hardness achieved was between 728 and 905 HV0.1. These findings are significant to modern development of hard coatings for wear resistant applications.

  9. Interconnected High-Voltage Pulsed-Power Converters System Design for H− Ion Sources

    CERN Document Server

    Aguglia, D

    2014-01-01

    This paper presents the design and experimental validations of a system of three new high-voltage (HV) pulsedpower converters for the H− sources. The system requires three pulsed voltages (50, 40, and 25 kV to ground) at 2-Hz repetition rate, for 700 μs of usable flat-top. The solution presents ripplefree output voltages and minimal stored energy to protect the ion source from the consequences of arc events. Experimental results on the final full-scale prototype are presented. In case of short-circuit events, the maximal energy delivered to the source is in the Joule range. HV flat-top stability of 1% is experimentally achieved with a simple Proportional-Integral- Derivative regulation and preliminary tuned H− source (e.g., radio frequency control, gas injection, and so forth). The system is running since more than a year with no power converter failures and damage to the source.

  10. Design of a Shielded Reflection Type Pulsed Eddy Current Probe for the Evaluation of Thickness

    Energy Technology Data Exchange (ETDEWEB)

    Shin, Young Kil; Choi, Dong Myung [Kunsan National University, Gunsan (Korea, Republic of)

    2007-10-15

    For better evaluation of material thickness by using the reflection type pulsed eddy current method, various probe models are designed and their response signals, characteristics, and sensitivities to thickness variation are investigated by a numerical analysis method. Since the sensor needs to detect magnetic fields from eddy currents induced in a test material, not from the exciter coil, two types of models that are shielded by the combination of copper and ferrite and only by ferrite are considered. By studying response signals from these shielded probe models, the peak value and the zero crossing time are selected as useful signal features for the evaluation of material thickness. Investigation of sensitivities of these two features shows that the sensitivity of peak value is more useful than that of zero crossing time and that the probe shielded only by ferrite gives much better sensitivity to thickness variation

  11. Design and fabrication of the vacuum systems for TPS pulsed septum magnets

    Science.gov (United States)

    Chan, C. K.; Chang, C. C.; Chen, C. L.; Yang, C. S.; Chen, C. S.; Lin, F. Y.; Chen, J. R.

    2014-11-01

    Three in-air pulsed septum magnets were developed to inject and extract electron beams for the 3 GeV synchrotron facility, the Taiwan Photon Source (TPS). The vacuum chamber is a novel combined aluminium-stainless steel design, using a bimetallic flange to connect the two material types. To evaluate the vacuum performances of these vacuum chambers, we set up a test bench at which we simultaneously measure the rates of thermal outgassing of the aluminium chamber and the septum tube with a throughput method. The test result indicates that the rate q72 of thermal outgassing measured after 1 day from baking at 150 °C was 1×10-13 mbar L s-1 cm-2. The magnetic leakage measurements show the combination of conductor slitting, magnetic shielding and the aluminium vacuum chamber reduce the peak value of the leakage field integral to ~10 G cm along the trajectory of the stored beam.

  12. Blind Separation of Two Users Based on User Delays and Optimal Pulse-Shape Design

    Directory of Open Access Journals (Sweden)

    Poor HVincent

    2010-01-01

    Full Text Available A wireless network is considered, in which two spatially distributed users transmit narrow-band signals simultaneously over the same channel using the same power. User separation is achieved by oversampling the received signal and formulating a virtual multiple-input multiple-output (MIMO system based on the resulting polyphase components. Because of oversampling, high correlations can occur between the columns of the virtual MIMO system matrix which can be detrimental to user separation. A novel pulse-shape waveform design is proposed that results in low correlation between the columns of the system matrix, while it exploits all available bandwidth as dictated by a spectral mask. It is also shown that the use of successive interference cancelation in combination with blind source separation further improves the separation performance.

  13. Design and implementation of a sigma delta technology based pulse oximeter's acquisition stage

    Science.gov (United States)

    Rossi, E. E.; Peñalva, A.; Schaumburg, F.

    2011-12-01

    Pulse oximetry is a widely used tool in medical practice for estimating patient's fraction of hemoglobin bonded to oxygen. Conventional oximetry presents limitations when changes in the baseline, or low amplitude of signals involved occur. The aim of this paper is to simultaneously solve these constraints and to simplify the circuitry needed, by using ΣΔ technology. For this purpose, a board for the acquisition of the needed signals was developed, together with a PC managed software which controls it, and displays and processes in real time the information acquired. Also laboratory and field tests where designed and executed to verify the performance of this equipment in adverse situations. A simple, robust and economic instrument was achieved, capable of obtaining signals even in situations where conventional oximetry fails.

  14. Design and implementation of a sigma delta technology based pulse oximeter's acquisition stage

    International Nuclear Information System (INIS)

    Rossi, E E; Peñalva, A; Schaumburg, F

    2011-01-01

    Pulse oximetry is a widely used tool in medical practice for estimating patient's fraction of hemoglobin bonded to oxygen. Conventional oximetry presents limitations when changes in the baseline, or low amplitude of signals involved occur. The aim of this paper is to simultaneously solve these constraints and to simplify the circuitry needed, by using ΣΔ technology. For this purpose, a board for the acquisition of the needed signals was developed, together with a PC managed software which controls it, and displays and processes in real time the information acquired. Also laboratory and field tests where designed and executed to verify the performance of this equipment in adverse situations. A simple, robust and economic instrument was achieved, capable of obtaining signals even in situations where conventional oximetry fails.

  15. Designing universal primers for the isolation of DNA sequences encoding Proanthocyanidins biosynthetic enzymes in Crataegus aronia

    Directory of Open Access Journals (Sweden)

    Zuiter Afnan

    2012-08-01

    Full Text Available Abstract Background Hawthorn is the common name of all plant species in the genus Crataegus, which belongs to the Rosaceae family. Crataegus are considered useful medicinal plants because of their high content of proanthocyanidins (PAs and other related compounds. To improve PAs production in Crataegus tissues, the sequences of genes encoding PAs biosynthetic enzymes are required. Findings Different bioinformatics tools, including BLAST, multiple sequence alignment and alignment PCR analysis were used to design primers suitable for the amplification of DNA fragments from 10 candidate genes encoding enzymes involved in PAs biosynthesis in C. aronia. DNA sequencing results proved the utility of the designed primers. The primers were used successfully to amplify DNA fragments of different PAs biosynthesis genes in different Rosaceae plants. Conclusion To the best of our knowledge, this is the first use of the alignment PCR approach to isolate DNA sequences encoding PAs biosynthetic enzymes in Rosaceae plants.

  16. B1 mapping for bias-correction in quantitative T1 imaging of the brain at 3T using standard pulse sequences.

    Science.gov (United States)

    Boudreau, Mathieu; Tardif, Christine L; Stikov, Nikola; Sled, John G; Lee, Wayne; Pike, G Bruce

    2017-12-01

    B 1 mapping is important for many quantitative imaging protocols, particularly those that include whole-brain T 1 mapping using the variable flip angle (VFA) technique. However, B 1 mapping sequences are not typically available on many magnetic resonance imaging (MRI) scanners. The aim of this work was to demonstrate that B 1 mapping implemented using standard scanner product pulse sequences can produce B 1 (and VFA T 1 ) maps comparable in quality and acquisition time to advanced techniques. Six healthy subjects were scanned at 3.0T. An interleaved multislice spin-echo echo planar imaging double-angle (EPI-DA) B 1 mapping protocol, using a standard product pulse sequence, was compared to two alternative methods (actual flip angle imaging, AFI, and Bloch-Siegert shift, BS). Single-slice spin-echo DA B 1 maps were used as a reference for comparison (Ref. DA). VFA flip angles were scaled using each B 1 map prior to fitting T 1 ; the nominal flip angle case was also compared. The pooled-subject voxelwise correlation (ρ) for B 1 maps (BS/AFI/EPI-DA) relative to the reference B 1 scan (Ref. DA) were ρ = 0.92/0.95/0.98. VFA T 1 correlations using these maps were ρ = 0.86/0.88/0.96, much better than without B 1 correction (ρ = 0.53). The relative error for each B 1 map (BS/AFI/EPI-DA/Nominal) had 95 th percentiles of 5/4/3/13%. Our findings show that B 1 mapping implemented using product pulse sequences can provide excellent quality B 1 (and VFA T 1 ) maps, comparable to other custom techniques. This fast whole-brain measurement (∼2 min) can serve as an excellent alternative for researchers without access to advanced B 1 pulse sequences. 1 Technical Efficacy: Stage 1 J. Magn. Reson. Imaging 2017;46:1673-1682. © 2017 International Society for Magnetic Resonance in Medicine.

  17. Generation of brain pseudo-CTs using an undersampled, single-acquisition UTE-mDixon pulse sequence and unsupervised clustering

    International Nuclear Information System (INIS)

    Su, Kuan-Hao; Hu, Lingzhi; Traughber, Melanie; Stehning, Christian; Helle, Michael; Qian, Pengjiang; Thompson, Cheryl L.; Pereira, Gisele C.; Traughber, Bryan J.; Jordan, David W.; Herrmann, Karin A.; Muzic, Raymond F.

    2015-01-01

    Purpose: MR-based pseudo-CT has an important role in MR-based radiation therapy planning and PET attenuation correction. The purpose of this study is to establish a clinically feasible approach, including image acquisition, correction, and CT formation, for pseudo-CT generation of the brain using a single-acquisition, undersampled ultrashort echo time (UTE)-mDixon pulse sequence. Methods: Nine patients were recruited for this study. For each patient, a 190-s, undersampled, single acquisition UTE-mDixon sequence of the brain was acquired (TE = 0.1, 1.5, and 2.8 ms). A novel method of retrospective trajectory correction of the free induction decay (FID) signal was performed based on point-spread functions of three external MR markers. Two-point Dixon images were reconstructed using the first and second echo data (TE = 1.5 and 2.8 ms). R2 ∗ images (1/T2 ∗ ) were then estimated and were used to provide bone information. Three image features, i.e., Dixon-fat, Dixon-water, and R2 ∗ , were used for unsupervised clustering. Five tissue clusters, i.e., air, brain, fat, fluid, and bone, were estimated using the fuzzy c-means (FCM) algorithm. A two-step, automatic tissue-assignment approach was proposed and designed according to the prior information of the given feature space. Pseudo-CTs were generated by a voxelwise linear combination of the membership functions of the FCM. A low-dose CT was acquired for each patient and was used as the gold standard for comparison. Results: The contrast and sharpness of the FID images were improved after trajectory correction was applied. The mean of the estimated trajectory delay was 0.774 μs (max: 1.350 μs; min: 0.180 μs). The FCM-estimated centroids of different tissue types showed a distinguishable pattern for different tissues, and significant differences were found between the centroid locations of different tissue types. Pseudo-CT can provide additional skull detail and has low bias and absolute error of estimated CT

  18. Study design requirements for RNA sequencing-based breast cancer diagnostics.

    Science.gov (United States)

    Mer, Arvind Singh; Klevebring, Daniel; Grönberg, Henrik; Rantalainen, Mattias

    2016-02-01

    Sequencing-based molecular characterization of tumors provides information required for individualized cancer treatment. There are well-defined molecular subtypes of breast cancer that provide improved prognostication compared to routine biomarkers. However, molecular subtyping is not yet implemented in routine breast cancer care. Clinical translation is dependent on subtype prediction models providing high sensitivity and specificity. In this study we evaluate sample size and RNA-sequencing read requirements for breast cancer subtyping to facilitate rational design of translational studies. We applied subsampling to ascertain the effect of training sample size and the number of RNA sequencing reads on classification accuracy of molecular subtype and routine biomarker prediction models (unsupervised and supervised). Subtype classification accuracy improved with increasing sample size up to N = 750 (accuracy = 0.93), although with a modest improvement beyond N = 350 (accuracy = 0.92). Prediction of routine biomarkers achieved accuracy of 0.94 (ER) and 0.92 (Her2) at N = 200. Subtype classification improved with RNA-sequencing library size up to 5 million reads. Development of molecular subtyping models for cancer diagnostics requires well-designed studies. Sample size and the number of RNA sequencing reads directly influence accuracy of molecular subtyping. Results in this study provide key information for rational design of translational studies aiming to bring sequencing-based diagnostics to the clinic.

  19. Conceptual designs of two petawatt-class pulsed-power accelerators for high-energy-density-physics experiments

    OpenAIRE

    W. A. Stygar; T. J. Awe; J. E. Bailey; N. L. Bennett; E. W. Breden; E. M. Campbell; R. E. Clark; R. A. Cooper; M. E. Cuneo; J. B. Ennis; D. L. Fehl; T. C. Genoni; M. R. Gomez; G. W. Greiser; F. R. Gruner

    2015-01-01

    We have developed conceptual designs of two petawatt-class pulsed-power accelerators: Z 300 and Z 800. The designs are based on an accelerator architecture that is founded on two concepts: single-stage electrical-pulse compression and impedance matching [Phys. Rev. ST Accel. Beams 10, 030401 (2007)]. The prime power source of each machine consists of 90 linear-transformer-driver (LTD) modules. Each module comprises LTD cavities connected electrically in series, each of which is powered by 5-G...

  20. Multi-qubit compensation sequences

    International Nuclear Information System (INIS)

    Tomita, Y; Merrill, J T; Brown, K R

    2010-01-01

    The Hamiltonian control of n qubits requires precision control of both the strength and timing of interactions. Compensation pulses relax the precision requirements by reducing unknown but systematic errors. Using composite pulse techniques designed for single qubits, we show that systematic errors for n-qubit systems can be corrected to arbitrary accuracy given either two non-commuting control Hamiltonians with identical systematic errors or one error-free control Hamiltonian. We also examine composite pulses in the context of quantum computers controlled by two-qubit interactions. For quantum computers based on the XY interaction, single-qubit composite pulse sequences naturally correct systematic errors. For quantum computers based on the Heisenberg or exchange interaction, the composite pulse sequences reduce the logical single-qubit gate errors but increase the errors for logical two-qubit gates.

  1. Formal Learning Sequences and Progression in the Studio: A Framework for Digital Design Education

    Directory of Open Access Journals (Sweden)

    Pontus Wärnestål

    2016-02-01

    Full Text Available This paper examines how to leverage the design studio learning environment throughout long-term Digital Design education in order to support students to progress from tactical, well-defined, device-centric routine design, to confidently design sustainable solutions for strategic, complex, problems for a wide range of devices and platforms in the digital space. We present a framework derived from literature on design, creativity, and theories on learning that: (a implements a theory of formal learning sequences as a user-centered design process in the studio; and (b describes design challenge progressions in the design studio environment modeled in seven dimensions. The framework can be used as a tool for designing, evaluating, and communicating course progressions within – and between series of – design studio courses. This approach is evaluated by implementing a formal learning sequence framework in a series of design studio courses that progress in an undergraduate design-oriented Informatics program. Reflections from students, teachers, and external clients indicate high student motivation and learning goal achievement, high teacher satisfaction and skill development, and high satisfaction among external clients.

  2. Design of a bolometer for total-energy measurement of the linear coherent light source pulsed X-ray laser

    International Nuclear Information System (INIS)

    Friedrich, S.; Li, L.; Ott, L.L.; Kolgani, Rajeswari M.; Yong, G.J.; Ali, Z.A.; Drury, O.B.; Ables, E.; Bionta, R.M.

    2006-01-01

    We are developing a cryogenic bolometer to measure the total energy of the linear coherent light source (LCLS) free electron X-ray laser to be built at the Stanford Linear Accelerator Center. The laser will produce ultrabright X-ray pulses in the energy range between 0.8 and 8 keV with ∼10 12 photons per ∼200 fs pulse at a repeat interval of 8 ms, and will be accompanied by a halo of spontaneous undulator radiation. The bolometer is designed to determine the total energy of each laser pulse to within (1- x ) Sr x MnO 3 sensor array at the metal-insulator transition, where the composition x is adjusted to produce the desired transition temperature. We discuss design considerations and material choices, and present numerical simulations of the thermal response

  3. PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance.

    NARCIS (Netherlands)

    Nadon, Celine; Van Walle, Ivo; Gerner-Smidt, Peter; Campos, Josefina; Chinen, Isabel; Concepcion-Acevedo, Jeniffer; Gilpin, Brent; Smith, Anthony M; Man Kam, Kai; Perez, Enrique; Trees, Eija; Kubota, Kristy; Takkinen, Johanna; Nielsen, Eva Møller; Carleton, Heather

    2017-01-01

    PulseNet International is a global network dedicated to laboratory-based surveillance for food-borne diseases. The network comprises the national and regional laboratory networks of Africa, Asia Pacific, Canada, Europe, Latin America and the Caribbean, the Middle East, and the United States. The

  4. incaRNAfbinv: a web server for the fragment-based design of RNA sequences

    Science.gov (United States)

    Drory Retwitzer, Matan; Reinharz, Vladimir; Ponty, Yann; Waldispühl, Jérôme; Barash, Danny

    2016-01-01

    Abstract In recent years, new methods for computational RNA design have been developed and applied to various problems in synthetic biology and nanotechnology. Lately, there is considerable interest in incorporating essential biological information when solving the inverse RNA folding problem. Correspondingly, RNAfbinv aims at including biologically meaningful constraints and is the only program to-date that performs a fragment-based design of RNA sequences. In doing so it allows the design of sequences that do not necessarily exactly fold into the target, as long as the overall coarse-grained tree graph shape is preserved. Augmented by the weighted sampling algorithm of incaRNAtion, our web server called incaRNAfbinv implements the method devised in RNAfbinv and offers an interactive environment for the inverse folding of RNA using a fragment-based design approach. It takes as input: a target RNA secondary structure; optional sequence and motif constraints; optional target minimum free energy, neutrality and GC content. In addition to the design of synthetic regulatory sequences, it can be used as a pre-processing step for the detection of novel natural occurring RNAs. The two complementary methodologies RNAfbinv and incaRNAtion are merged together and fully implemented in our web server incaRNAfbinv, available at http://www.cs.bgu.ac.il/incaRNAfbinv. PMID:27185893

  5. Design of shielded encircling send-receive type pulsed eddy current probe using numerical analysis method

    Energy Technology Data Exchange (ETDEWEB)

    Shin, Young Kil [Dept. of Electircal Engineeirng, Kunsan National University, Kunsan (Korea, Republic of)

    2013-12-15

    An encircling send-receive type pulsed eddy current (PEC) probe is designed for use in aluminum tube inspection. When bare receive coils located away from the exciter were used, the peak time of the signal did not change although the distance from the exciter increased. This is because the magnetic flux from the exciter coil directly affects the receive coil signal. Therefore, in this work, both the exciter and the sensor coils were shielded in order to reduce the influence of direct flux from the exciter coil. Numerical simulation with the designed shielded encircling PEC probe showed the corresponding increase of the peak time as the sensor distance increased. Ferrite and carbon steel shields were compared and results of the ferrite shielding showed a slightly stronger peak value and a quicker peak time than those of the carbon steel shielding. Simulation results showed that the peak value increased as the defect size (such as depth and length) increased regardless of the sensor location. To decide a proper sensor location, the sensitivity of the peak value to defect size variation was investigated and found that the normalized peak value was more sensitive to defect size variation when the sensor was located closer to the exciter.

  6. Design of a high-pressure single pulse shock tube for chemical kinetic investigations

    International Nuclear Information System (INIS)

    Tranter, R. S.; Brezinsky, K.; Fulle, D.

    2001-01-01

    A single pulse shock tube has been designed and constructed in order to achieve extremely high pressures and temperatures to facilitate gas-phase chemical kinetic experiments. Postshock pressures of greater than 1000 atmospheres have been obtained. Temperatures greater than 1400 K have been achieved and, in principle, temperatures greater than 2000 K are easily attainable. These high temperatures and pressures permit the investigation of hydrocarbon species pyrolysis and oxidation reactions. Since these reactions occur on the time scale of 0.5--2 ms the shock tube has been constructed with an adjustable length driven section that permits variation of reaction viewing times. For any given reaction viewing time, samples can be withdrawn through a specially constructed automated sampling apparatus for subsequent species analysis with gas chromatography and mass spectrometry. The details of the design and construction that have permitted the successful generation of very high-pressure shocks in this unique apparatus are described. Additional information is provided concerning the diaphragms used in the high-pressure shock tube

  7. Design and development of a high-power, 500 kV pulsed line

    International Nuclear Information System (INIS)

    Nicolas, A.

    A study was made of very high voltage (500 kV) pulse production for 50 ns at half height. A coaxial line was coupled to a Marx generator for obtaining the pulses on an impedance-adapted electron diode. The maximum power obtained was 6.4 x 10 10 W with a current front in the diode of about 30 ns (80 ns pulse length at half height)

  8. Sequencing of Dust Filter Production Process Using Design Structure Matrix (DSM)

    Science.gov (United States)

    Sari, R. M.; Matondang, A. R.; Syahputri, K.; Anizar; Siregar, I.; Rizkya, I.; Ursula, C.

    2018-01-01

    Metal casting company produces machinery spare part for manufactures. One of the product produced is dust filter. Most of palm oil mill used this product. Since it is used in most of palm oil mill, company often have problems to address this product. One of problem is the disordered of production process. It carried out by the job sequencing. The important job that should be solved first, least implement, while less important job and could be completed later, implemented first. Design Structure Matrix (DSM) used to analyse and determine priorities in the production process. DSM analysis is sort of production process through dependency sequencing. The result of dependency sequences shows the sequence process according to the inter-process linkage considering before and after activities. Finally, it demonstrates their activities to the coupled activities for metal smelting, refining, grinding, cutting container castings, metal expenditure of molds, metal casting, coating processes, and manufacture of molds of sand.

  9. Using Genome Sequence to Enable the Design of Medicines and Chemical Probes.

    Science.gov (United States)

    Angelbello, Alicia J; Chen, Jonathan L; Childs-Disney, Jessica L; Zhang, Peiyuan; Wang, Zi-Fu; Disney, Matthew D

    2018-02-28

    Rapid progress in genome sequencing technology has put us firmly into a postgenomic era. A key challenge in biomedical research is harnessing genome sequence to fulfill the promise of personalized medicine. This Review describes how genome sequencing has enabled the identification of disease-causing biomolecules and how these data have been converted into chemical probes of function, preclinical lead modalities, and ultimately U.S. Food and Drug Administration (FDA)-approved drugs. In particular, we focus on the use of oligonucleotide-based modalities to target disease-causing RNAs; small molecules that target DNA, RNA, or protein; the rational repurposing of known therapeutic modalities; and the advantages of pharmacogenetics. Lastly, we discuss the remaining challenges and opportunities in the direct utilization of genome sequence to enable design of medicines.

  10. Design of multiple sequence alignment algorithms on parallel, distributed memory supercomputers.

    Science.gov (United States)

    Church, Philip C; Goscinski, Andrzej; Holt, Kathryn; Inouye, Michael; Ghoting, Amol; Makarychev, Konstantin; Reumann, Matthias

    2011-01-01

    The challenge of comparing two or more genomes that have undergone recombination and substantial amounts of segmental loss and gain has recently been addressed for small numbers of genomes. However, datasets of hundreds of genomes are now common and their sizes will only increase in the future. Multiple sequence alignment of hundreds of genomes remains an intractable problem due to quadratic increases in compute time and memory footprint. To date, most alignment algorithms are designed for commodity clusters without parallelism. Hence, we propose the design of a multiple sequence alignment algorithm on massively parallel, distributed memory supercomputers to enable research into comparative genomics on large data sets. Following the methodology of the sequential progressiveMauve algorithm, we design data structures including sequences and sorted k-mer lists on the IBM Blue Gene/P supercomputer (BG/P). Preliminary results show that we can reduce the memory footprint so that we can potentially align over 250 bacterial genomes on a single BG/P compute node. We verify our results on a dataset of E.coli, Shigella and S.pneumoniae genomes. Our implementation returns results matching those of the original algorithm but in 1/2 the time and with 1/4 the memory footprint for scaffold building. In this study, we have laid the basis for multiple sequence alignment of large-scale datasets on a massively parallel, distributed memory supercomputer, thus enabling comparison of hundreds instead of a few genome sequences within reasonable time.

  11. Designing quadratic nonlinear photonic crystal fibers for soliton compression to few-cycle pulses

    DEFF Research Database (Denmark)

    Bache, Morten; Moses, Jeffrey; Lægsgaard, Jesper

    2007-01-01

    phase shifts accessible. This self-defocusing nonlinearity can be used to compress a pulse when combined with normal dispersion, and problems normally encountered due to self-focusing in cubic media are avoided. Thus, having no power limit, in bulk media a self-defocusing soliton compressor can create...... high-energy near single-cycle fs pulses (Liu et al., 2006). However, the group-velocity mismatch (GVM) between the FW and second harmonic (SH), given by the inverse group velocity difference d12=1/Vg,1 - 1/Vg,2, limits the pulse quality and compression ratio. Especially very short input pulses (...

  12. Predicting the tolerated sequences for proteins and protein interfaces using RosettaBackrub flexible backbone design.

    Directory of Open Access Journals (Sweden)

    Colin A Smith

    Full Text Available Predicting the set of sequences that are tolerated by a protein or protein interface, while maintaining a desired function, is useful for characterizing protein interaction specificity and for computationally designing sequence libraries to engineer proteins with new functions. Here we provide a general method, a detailed set of protocols, and several benchmarks and analyses for estimating tolerated sequences using flexible backbone protein design implemented in the Rosetta molecular modeling software suite. The input to the method is at least one experimentally determined three-dimensional protein structure or high-quality model. The starting structure(s are expanded or refined into a conformational ensemble using Monte Carlo simulations consisting of backrub backbone and side chain moves in Rosetta. The method then uses a combination of simulated annealing and genetic algorithm optimization methods to enrich for low-energy sequences for the individual members of the ensemble. To emphasize certain functional requirements (e.g. forming a binding interface, interactions between and within parts of the structure (e.g. domains can be reweighted in the scoring function. Results from each backbone structure are merged together to create a single estimate for the tolerated sequence space. We provide an extensive description of the protocol and its parameters, all source code, example analysis scripts and three tests applying this method to finding sequences predicted to stabilize proteins or protein interfaces. The generality of this method makes many other applications possible, for example stabilizing interactions with small molecules, DNA, or RNA. Through the use of within-domain reweighting and/or multistate design, it may also be possible to use this method to find sequences that stabilize particular protein conformations or binding interactions over others.

  13. Design and testing of 45 kV, 50 kHz pulse power supply for dielectric barrier discharges

    Science.gov (United States)

    Sharma, Surender Kumar; Shyam, Anurag

    2016-10-01

    The design, construction, and testing of high frequency, high voltage pulse power supply are reported. The purpose of the power supply is to generate dielectric barrier discharges for industrial applications. The power supply is compact and has the advantage of low cost, over current protection, and convenient control for voltage and frequency selection. The power supply can generate high voltage pulses of up to 45 kV at the repetitive frequency range of 1 kHz-50 kHz with 1.2 kW input power. The output current of the power supply is limited to 500 mA. The pulse rise time and fall time are less than 2 μs and the pulse width is 2 μs. The power supply is short circuit proof and can withstand variable plasma load conditions. The power supply mainly consists of a half bridge series resonant converter to charge an intermediate capacitor, which discharges through a step-up transformer at high frequency to generate high voltage pulses. Semiconductor switches and amorphous cores are used for power modulation at higher frequencies. The power supply is tested with quartz tube dielectric barrier discharge load and worked stably. The design details and the performance of the power supply on no load and dielectric barrier discharge load are presented.

  14. Design of a large heat lift 40 K to 80 K pulse tube cryocooler for space applications

    NARCIS (Netherlands)

    Trollier, T.; Tanchon, J.; Buquet, J.; Ravex, A.; Charles, I.; Coynel, A.; Duband, L.; Ercolani, E.; Guillemet, L.; Mullié, J.; Dam, J.A.M.; Benschop, T.; Linder, M.; Miller, S.D.; Ross, Jr. R.G.

    2007-01-01

    A Large heat lift Pulse Tube Cooler (LPTC) is under development in partnership with AL/ DTA, CEA/SBT and THALES Cryogenics. The engineering model is expected to provide 2.3 W at 50 K at a 10 °C rejection temperature and 160 watts of electrical input power to the compressor. The split coaxial design

  15. Tracing outbreaks of Streptococcus equi infection (strangles) in horses using sequence variation in the seM gene and pulsed-field gel electrophoresis.

    Science.gov (United States)

    Lindahl, Susanne; Söderlund, Robert; Frosth, Sara; Pringle, John; Båverud, Viveca; Aspán, Anna

    2011-11-21

    Strangles is a serious respiratory disease in horses caused by Streptococcus equi subspecies equi (S. equi). Transmission of the disease occurs by direct contact with an infected horse or contaminated equipment. Genetically, S. equi strains are highly homogenous and differentiation of strains has proven difficult. However, the S. equi M-protein SeM contains a variable N-terminal region and has been proposed as a target gene to distinguish between different strains of S. equi and determine the source of an outbreak. In this study, strains of S. equi (n=60) from 32 strangles outbreaks in Sweden during 1998-2003 and 2008-2009 were genetically characterized by sequencing the SeM protein gene (seM), and by pulsed-field gel electrophoresis (PFGE). Swedish strains belonged to 10 different seM types, of which five have not previously been described. Most were identical or highly similar to allele types from strangles outbreaks in the UK. Outbreaks in 2008/2009 sharing the same seM type were associated by geographic location and/or type of usage of the horses (racing stables). Sequencing of the seM gene generally agreed with pulsed-field gel electrophoresis profiles. Our data suggest that seM sequencing as a epidemiological tool is supported by the agreement between seM and PFGE and that sequencing of the SeM protein gene is more sensitive than PFGE in discriminating strains of S. equi. Copyright © 2011 Elsevier B.V. All rights reserved.

  16. Effect of pulse sequence parameter selection on signal strength in positive-contrast MRI markers for MRI-based prostate postimplant assessment

    Energy Technology Data Exchange (ETDEWEB)

    Lim, Tze Yee [Department of Radiation Physics, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, Texas 77030 and The University of Texas at Houston Graduate School of Biomedical Sciences, 6767 Bertner Avenue, Houston, Texas 77030 (United States); Kudchadker, Rajat J., E-mail: rkudchad@mdanderson.org; Wang, Jihong; Ibbott, Geoffrey S. [Department of Radiation Physics, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, Texas 77030 (United States); Stafford, R. Jason [Department of Imaging Physics, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, Texas 77030 (United States); MacLellan, Christopher [Department of Imaging Physics, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, Texas 77030 and The University of Texas at Houston Graduate School of Biomedical Sciences, 6767 Bertner Avenue, Houston, Texas 77030 (United States); Rao, Arvind [Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, Texas 77030 (United States); Frank, Steven J. [Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, Texas 77030 (United States)

    2016-07-15

    Purpose: For postimplant dosimetric assessment, computed tomography (CT) is commonly used to identify prostate brachytherapy seeds, at the expense of accurate anatomical contouring. Magnetic resonance imaging (MRI) is superior to CT for anatomical delineation, but identification of the negative-contrast seeds is challenging. Positive-contrast MRI markers were proposed to replace spacers to assist seed localization on MRI images. Visualization of these markers under varying scan parameters was investigated. Methods: To simulate a clinical scenario, a prostate phantom was implanted with 66 markers and 86 seeds, and imaged on a 3.0T MRI scanner using a 3D fast radiofrequency-spoiled gradient recalled echo acquisition with various combinations of scan parameters. Scan parameters, including flip angle, number of excitations, bandwidth, field-of-view, slice thickness, and encoding steps were systematically varied to study their effects on signal, noise, scan time, image resolution, and artifacts. Results: The effects of pulse sequence parameter selection on the marker signal strength and image noise were characterized. The authors also examined the tradeoff between signal-to-noise ratio, scan time, and image artifacts, such as the wraparound artifact, susceptibility artifact, chemical shift artifact, and partial volume averaging artifact. Given reasonable scan time and managable artifacts, the authors recommended scan parameter combinations that can provide robust visualization of the MRI markers. Conclusions: The recommended MRI pulse sequence protocol allows for consistent visualization of the markers to assist seed localization, potentially enabling MRI-only prostate postimplant dosimetry.

  17. Statistical approach of measurement of signal to noise ratio in according to change pulse sequence on brain MRI meningioma and cyst images

    International Nuclear Information System (INIS)

    Lee, Eul Kyu; Choi, Kwan Woo; Jeong, Hoi Woun; Jang, Seo Goo; Kim, Ki Won; Son, Soon Yong; Min, Jung Whan; Son, Jin Hyun

    2016-01-01

    The purpose of this study was to needed basis of measure MRI CAD development for signal to noise ratio (SNR) by pulse sequence analysis from region of interest (ROI) in brain magnetic resonance imaging (MRI) contrast. We examined images of brain MRI contrast enhancement of 117 patients, from January 2005 to December 2015 in a University-affiliated hospital, Seoul, Korea. Diagnosed as one of two brain diseases such as meningioma and cysts SNR for each patient's image of brain MRI were calculated by using Image J. Differences of SNR among two brain diseases were tested by SPSS Statistics21 ANOVA test for there was statistical significance (p < 0.05). We have analysis socio-demographical variables, SNR according to sequence disease, 95% confidence according to SNR of sequence and difference in a mean of SNR. Meningioma results, with the quality of distributions in the order of T1CE, T2 and T1, FLAIR. Cysts results, with the quality of distributions in the order of T2 and T1, T1CE and FLAIR. SNR of MRI sequences of the brain would be useful to classify disease. Therefore, this study will contribute to evaluate brain diseases, and be a fundamental to enhancing the accuracy of CAD development

  18. Lung MRI of invasive fungal infection at 3 Tesla: evaluation of five different pulse sequences and comparison with multidetector computed tomography (MDCT)

    Energy Technology Data Exchange (ETDEWEB)

    Yan, Chenggong; Tan, Xiangliang; Li, Caixia; Wu, Yuankui; Hao, Peng; Xiong, Wei; Xu, Yikai [Southern Medical University, Department of Medical Imaging Center, Nanfang Hospital, Guangzhou, Guangdong (China); Wei, Qi; Feng, Ru; Xu, Jun [Southern Medical University, Department of Hematology, Nanfang Hospital, Guangzhou (China); Chan, Queenie [Philips Healthcare, New Territories (China)

    2014-09-18

    To evaluate the diagnostic performance of five MR sequences to detect pulmonary infectious lesions in patients with invasive fungal infection (IFI), using multidetector computed tomography (MDCT) as the reference standard. Thirty-four immunocompromised patients with suspected IFI underwent MDCT and MRI. The MR studies were performed using five pulse sequences at 3.0 T: T2-weighted turbo spin echo (TSE), short-tau inversion recovery (STIR), spectrally selective attenuated inversion recovery (SPAIR), T1-weighted high resolution isotropic volume excitation (e-THRIVE) and T1-weighted fast field echo (T1-FFE). The size, lesion-to-lung contrast ratio and the detectability of pulmonary lesions on MR images were assessed. Image quality and artefacts on different sequences were also rated. A total of 84 lesions including nodules (n = 44) and consolidation (n = 40) were present in 75 lobes. SPAIR and e-THRIVE images achieved high overall lesion-related sensitivities for the detection of pulmonary abnormalities (90.5 % and 86.9 %, respectively). STIR showed the highest lesion-to-lung contrast ratio for nodules (21.8) and consolidation (17.0), whereas TSE had the fewest physiological artefacts. MRI at 3.0 T can depict clinically significant pulmonary IFI abnormalities with high accuracy compared to MDCT. SPAIR and e-THRIVE are preferred sequences for the detection of infectious lesions of 5 mm and larger. (orig.)

  19. Statistical approach of measurement of signal to noise ratio in according to change pulse sequence on brain MRI meningioma and cyst images

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Eul Kyu [Inje Paik University Hospital Jeo-dong, Seoul (Korea, Republic of); Choi, Kwan Woo [Asan Medical Center, Seoul (Korea, Republic of); Jeong, Hoi Woun [The Baekseok Culture University, Cheonan (Korea, Republic of); Jang, Seo Goo [The Soonchunhyang University, Asan (Korea, Republic of); Kim, Ki Won [Kyung Hee University Hospital at Gang-dong, Seoul (Korea, Republic of); Son, Soon Yong [The Wonkwang Health Science University, Iksan (Korea, Republic of); Min, Jung Whan; Son, Jin Hyun [The Shingu University, Sungnam (Korea, Republic of)

    2016-09-15

    The purpose of this study was to needed basis of measure MRI CAD development for signal to noise ratio (SNR) by pulse sequence analysis from region of interest (ROI) in brain magnetic resonance imaging (MRI) contrast. We examined images of brain MRI contrast enhancement of 117 patients, from January 2005 to December 2015 in a University-affiliated hospital, Seoul, Korea. Diagnosed as one of two brain diseases such as meningioma and cysts SNR for each patient's image of brain MRI were calculated by using Image J. Differences of SNR among two brain diseases were tested by SPSS Statistics21 ANOVA test for there was statistical significance (p < 0.05). We have analysis socio-demographical variables, SNR according to sequence disease, 95% confidence according to SNR of sequence and difference in a mean of SNR. Meningioma results, with the quality of distributions in the order of T1CE, T2 and T1, FLAIR. Cysts results, with the quality of distributions in the order of T2 and T1, T1CE and FLAIR. SNR of MRI sequences of the brain would be useful to classify disease. Therefore, this study will contribute to evaluate brain diseases, and be a fundamental to enhancing the accuracy of CAD development.

  20. Increasing sync rate of pulse-coupled oscillators via phase response function design: theory and application to wireless networks

    OpenAIRE

    Wang, Yongqiang; Nunez, Felipe; Doyle III, Francis J.

    2012-01-01

    This paper addresses the synchronization rate of weakly connected pulse-coupled oscillators (PCOs). We prove that besides coupling strength, the phase response function is also a determinant of synchronization rate. Inspired by the result, we propose to increase the synchronization rate of PCOs by designing the phase response function. This has important significance in PCO-based clock synchronization of wireless networks. By designing the phase response function, synchronization rate is incr...

  1. A new HCV genotype 6 subtype designated 6v was confirmed with three complete genome sequences.

    Science.gov (United States)

    Wang, Yizhong; Xia, Xueshan; Li, Chunhua; Maneekarn, Niwat; Xia, Wenjie; Zhao, Wenhua; Feng, Yue; Kung, Hsiang Fu; Fu, Yongshui; Lu, Ling

    2009-03-01

    Although hepatitis C virus (HCV) genotype 6 is classified into 21 subtypes, 6a-6u, new variants continue to be identified. To characterize the full-length genomes of three novel HCV genotype 6 variants: KMN02, KM046 and KM181. From sera of patients with HCV infection, the entire HCV genome was amplified by RT-PCR followed by direct DNA sequencing and phylogenetic analysis. The sera contained HCV genomes of 9461, 9429, and 9461nt in length, and each harboured a single ORF of 9051nt. The genomes showed 95.3-98.1% nucleotide similarity to each other and 72.2-75.4% similarity to 23 genotype 6 reference sequences, which represent subtypes 6a-6u and unassigned variants km41 and gz52557. Phylogenetic analyses demonstrated that they were genotype 6, but were subtypically distinct. Based on the current criteria of HCV classification, they were designed to represent a new subtype, 6v. Analysis of E1 and NS5B region partial sequences revealed two additional related variants, CMBD-14 and CMBD-86 that had been previously reported in northern Thailand and sequences dropped into Genbank. Three novel HCV genotype 6 variants were entirely sequenced and designated subtype 6v.

  2. Design and fabrication of the vacuum systems for TPS pulsed septum magnets

    Energy Technology Data Exchange (ETDEWEB)

    Chan, C.K.; Chang, C.C.; Chen, C.L.; Yang, C.S.; Chen, C.S.; Lin, F.Y.; Chen, J.R.

    2014-11-01

    Three in-air pulsed septum magnets were developed to inject and extract electron beams for the 3 GeV synchrotron facility, the Taiwan Photon Source (TPS). The vacuum chamber is a novel combined aluminium-stainless steel design, using a bimetallic flange to connect the two material types. To evaluate the vacuum performances of these vacuum chambers, we set up a test bench at which we simultaneously measure the rates of thermal outgassing of the aluminium chamber and the septum tube with a throughput method. The test result indicates that the rate q{sub 72} of thermal outgassing measured after 1 day from baking at 150 °C was 1×10{sup −13} mbar L s{sup −1} cm{sup −2}. The magnetic leakage measurements show the combination of conductor slitting, magnetic shielding and the aluminium vacuum chamber reduce the peak value of the leakage field integral to ∼10 G cm along the trajectory of the stored beam.

  3. Design and spectroscopic reflectometry characterization of pulsed laser deposition combinatorial libraries

    International Nuclear Information System (INIS)

    Schenck, Peter K.; Bassim, Nabil D.; Otani, Makoto; Oguchi, Hiroyuki; Green, Martin L.

    2007-01-01

    The goal of the design of pulsed laser deposition (PLD) combinatorial library films is to optimize the compositional coverage of the films while maintaining a uniform thickness. The deposition pattern of excimer laser PLD films can be modeled with a bimodal cos n distribution. Deposited films were characterized using a spectroscopic reflectometer (250-1000 nm) to map the thickness of both single composition calibration films and combinatorial library films. These distribution functions were used to simulate the composition and thickness of multiple target combinatorial library films. The simulations were correlated with electron-probe microanalysis wavelength-dispersive spectroscopy (EPMA-WDS) composition maps. The composition and thickness of the library films can be fine-tuned by adjusting the laser spot size, fluence, background gas pressure, target geometry and other processing parameters which affect the deposition pattern. Results from compositionally graded combinatorial library films of the ternary system Al 2 O 3 -HfO 2 -Y 2 O 3 are discussed

  4. Application of pulsed laser for evaluation and optimization of SEU-Hard Designs

    International Nuclear Information System (INIS)

    McMorrow, D.; Melinger, J.S.; Buchner, St.; Scott, T.; Brown, R.D.

    1999-01-01

    Pulsed laser SEU tests are used to pinpoint and characterize sensitive nodes of CMOS circuits and to provide feedback relevant to the development and optimization of radiation-hard designs. The present study reveals several examples of the quantitative utility of the laser system. The most direct approach to obtaining quantitative thresholds from laser SEU tests involved a calibration of the measured laser upset thresholds against heavy ion results. This procedure requires only a correlation between the laser and heavy ion measurements. This study shows that this correlation exists and is particularly strong and that the calibration factor is identical to that determined in previous studies. The laser SEU threshold energy corresponds to the most sensitive node located with the laser probe. The ion-equivalent laser LET is calculated using the calibration factor noted above. The measured heavy ion threshold is given as a range since heavy-ion upset measurements are discrete: the upper value gives the lowest LET ion to induce an upset; the lower value gives the next lower LET investigated. Laser SEU measurements often can be used directly for hardness assurance or diagnosis studies. (A.C.)

  5. Pulsed activation analyses of the ITER blanket design options considered in the blanket trade-off study

    International Nuclear Information System (INIS)

    Wang, Q.; Henderson, D.L.

    1995-01-01

    Pulsed activation calculations have been performed on two blanket options considered as part of the ITER home team blanket trade-off study. The objective was to compare the activity, afterheat and waste disposal rating (WDR) results of a composite blanket-shield design for the continuous operation approximation to a pulsed operation case to determine whether the differences are at most the duty factor as predicted by the two nuclide chain model. Up to a cooling period of 100 years, the pulsed activity and afterheat values were below the continuous oepration results and well within (except for one afterheat value) the maximum deviation predicted by the two nuclide chain model. No differences in the WDR values were noted as they are, to a large extent, based on long-lived nuclides which are insensitive to short-term changes in the operation history. (orig.)

  6. Design evolution enhances patient compliance for low-intensity pulsed ultrasound device usage

    Directory of Open Access Journals (Sweden)

    Pounder NM

    2016-11-01

    Full Text Available Neill M Pounder, John T Jones, Kevin J Tanis Bioventus LLC, Durham, NC, USA Abstract: Poor patient compliance or nonadherence with prescribed treatments can have a significant unfavorable impact on medical costs and clinical outcomes. In the current study, voice-of-the-customer research was conducted to aid in the development of a next-generation low-intensity pulsed ultrasound (LIPUS bone healing product. An opportunity to improve patient compliance reporting was identified, resulting in the incorporation into the next-generation device of a visual calendar that provides direct feedback to the patient, indicating days for which they successfully completed treatment. Further ­investigation was done on whether inclusion of the visual calendar improved patient adherence to the prescribed therapy (20 minutes of daily treatment over a 6-month period. Thus, 12,984 data files were analyzed from patients prescribed either the earlier- or the next-generation LIPUS device. Over the 6-month period, overall patient compliance was 83.8% with the next-generation LIPUS device, compared with 74.2% for the previous version (p<0.0001. Incorporation of the calendar feature resulted in compliance never decreasing below 76% over the analysis period, whereas compliance with the earlier-generation product fell to 51%. A literature review on the LIPUS device shows a correlation between clinical effectiveness and compliance rates more than 70%. Incorporation of stakeholder feedback throughout the design and innovation process of a next-generation LIPUS device resulted in a measurable improvement in patient adherence, which may help to optimize clinical outcomes. Keywords: LIPUS, ultrasound, compliance, patient adherence, medical device design

  7. SU-E-J-224: Using UTE and T1 Weighted Spin Echo Pulse Sequences for MR-Only Treatment Planning; Phantom Study

    Energy Technology Data Exchange (ETDEWEB)

    Yu, H; Fatemi, A [Sunnybrook Health Sciences Centre, Toronto, Ontario (Canada); Sahgal, A [University of Toronto, Toronto, ON (Canada)

    2015-06-15

    Purpose: Investigating a new approach in MRI based treatment planning using the combination of (Ultrashort Echo Time) UTE and T1 weighted spin echo pulse sequences to delineate air, bone and water (soft tissues) in generating pseudo CT images comparable with CT. Methods: A gel phantom containing chicken bones, ping pang balls filled with distilled water and air bubbles, was made. It scanned with MRI using UTE and 2D T1W SE pulse sequences with (in plane resolution= 0.53mm, slice thickness= 2 mm) and CT with (in plane resolution= 0.5 mm and slice thickness= 0.75mm) as a ground truth for geometrical accuracy. The UTE and T1W SE images were registered with CT using mutual information registration algorithm provided by Philips Pinnacle treatment planning system. The phantom boundaries were detected using Canny edge detection algorithm for CT, and MR images. The bone, air bubbles and water in ping pong balls were segmented from CT images using threshold 300HU, - 950HU and 0HU, respectively. These tissue inserts were automatically segmented from combined UTE and T1W SE images using edge detection and relative intensity histograms of the phantom. The obtained segmentations of air, bone and water inserts were evaluated with those obtained from CT. Results: Bone and air can be clearly differentiated in UTE images comparable to CT. Combining UTE and T1W SE images successfully segmented the air, bone and water. The maximum segmentation differences from combine MRI images (UTE and T1W SE) and CT are within 1.3 mm, 1.1mm for bone, air, respectively. The geometric distortion of UTE sequence is small less than 1 pixel (0.53 mm) of MR image resolution. Conclusion: Our approach indicates that MRI can be used solely for treatment planning and its quality is comparable with CT.

  8. Design of Long Period Pseudo-Random Sequences from the Addition of m -Sequences over 𝔽 p

    Directory of Open Access Journals (Sweden)

    Ren Jian

    2004-01-01

    Full Text Available Pseudo-random sequence with good correlation property and large linear span is widely used in code division multiple access (CDMA communication systems and cryptology for reliable and secure information transmission. In this paper, sequences with long period, large complexity, balance statistics, and low cross-correlation property are constructed from the addition of m -sequences with pairwise-prime linear spans (AMPLS. Using m -sequences as building blocks, the proposed method proved to be an efficient and flexible approach to construct long period pseudo-random sequences with desirable properties from short period sequences. Applying the proposed method to 𝔽 2 , a signal set ( ( 2 n − 1 ( 2 m − 1 , ( 2 n + 1 ( 2 m + 1 , ( 2 ( n + 1 / 2 + 1 ( 2 ( m + 1 / 2 + 1 is constructed.

  9. Mariner Mars 1971 television picture catalog. Volume 2: Sequence design and picture coverage

    Science.gov (United States)

    Koskela, P. E.; Helton, M. R.; Seeley, L. N.; Zawacki, S. J.

    1972-01-01

    A collection of data relating to the Mariner 9 TV picture is presented. The data are arranged to offer speedy identification of what took place during entire science cycles, on individual revolutions, and during individual science links or sequences. Summary tables present the nominal design for each of the major picture-taking cycles, along with the sequences actually taken on each revolution. These tables permit identification at a glance, all TV sequences and the corresponding individual pictures for the first 262 revolutions (primary mission). A list of TV pictures, categorized according to their latitude and longitude, is also provided. Orthographic and/or mercator plots for all pictures, along with pertinent numerical data for their center points are presented. Other tables and plots of interest are also included. This document is based upon data contained in the Supplementary Experiment Data Record (SEDR) files as of 21 August 1972.

  10. Sequence Design for a Test Tube of Interacting Nucleic Acid Strands.

    Science.gov (United States)

    Wolfe, Brian R; Pierce, Niles A

    2015-10-16

    We describe an algorithm for designing the equilibrium base-pairing properties of a test tube of interacting nucleic acid strands. A target test tube is specified as a set of desired "on-target" complexes, each with a target secondary structure and target concentration, and a set of undesired "off-target" complexes, each with vanishing target concentration. Sequence design is performed by optimizing the test tube ensemble defect, corresponding to the concentration of incorrectly paired nucleotides at equilibrium evaluated over the ensemble of the test tube. To reduce the computational cost of accepting or rejecting mutations to a random initial sequence, the structural ensemble of each on-target complex is hierarchically decomposed into a tree of conditional subensembles, yielding a forest of decomposition trees. Candidate sequences are evaluated efficiently at the leaf level of the decomposition forest by estimating the test tube ensemble defect from conditional physical properties calculated over the leaf subensembles. As optimized subsequences are merged toward the root level of the forest, any emergent defects are eliminated via ensemble redecomposition and sequence reoptimization. After successfully merging subsequences to the root level, the exact test tube ensemble defect is calculated for the first time, explicitly checking for the effect of the previously neglected off-target complexes. Any off-target complexes that form at appreciable concentration are hierarchically decomposed, added to the decomposition forest, and actively destabilized during subsequent forest reoptimization. For target test tubes representative of design challenges in the molecular programming and synthetic biology communities, our test tube design algorithm typically succeeds in achieving a normalized test tube ensemble defect ≤1% at a design cost within an order of magnitude of the cost of test tube analysis.

  11. Design and construction of double-Blumlein HV pulse power supply

    Indian Academy of Sciences (India)

    Springer Verlag Heidelberg #4 2048 1996 Dec 15 10:16:45

    A double Blumlein pulse generator is constructed using a coaxial cable. ... studying the streamer corona discharge and fast breakdown processes in air, it can also be used as a ... description of spark gap and water load is presented here.

  12. BG7: A New Approach for Bacterial Genome Annotation Designed for Next Generation Sequencing Data

    Science.gov (United States)

    Pareja-Tobes, Pablo; Manrique, Marina; Pareja-Tobes, Eduardo; Pareja, Eduardo; Tobes, Raquel

    2012-01-01

    BG7 is a new system for de novo bacterial, archaeal and viral genome annotation based on a new approach specifically designed for annotating genomes sequenced with next generation sequencing technologies. The system is versatile and able to annotate genes even in the step of preliminary assembly of the genome. It is especially efficient detecting unexpected genes horizontally acquired from bacterial or archaeal distant genomes, phages, plasmids, and mobile elements. From the initial phases of the gene annotation process, BG7 exploits the massive availability of annotated protein sequences in databases. BG7 predicts ORFs and infers their function based on protein similarity with a wide set of reference proteins, integrating ORF prediction and functional annotation phases in just one step. BG7 is especially tolerant to sequencing errors in start and stop codons, to frameshifts, and to assembly or scaffolding errors. The system is also tolerant to the high level of gene fragmentation which is frequently found in not fully assembled genomes. BG7 current version – which is developed in Java, takes advantage of Amazon Web Services (AWS) cloud computing features, but it can also be run locally in any operating system. BG7 is a fast, automated and scalable system that can cope with the challenge of analyzing the huge amount of genomes that are being sequenced with NGS technologies. Its capabilities and efficiency were demonstrated in the 2011 EHEC Germany outbreak in which BG7 was used to get the first annotations right the next day after the first entero-hemorrhagic E. coli genome sequences were made publicly available. The suitability of BG7 for genome annotation has been proved for Illumina, 454, Ion Torrent, and PacBio sequencing technologies. Besides, thanks to its plasticity, our system could be very easily adapted to work with new technologies in the future. PMID:23185310

  13. BG7: a new approach for bacterial genome annotation designed for next generation sequencing data.

    Directory of Open Access Journals (Sweden)

    Pablo Pareja-Tobes

    Full Text Available BG7 is a new system for de novo bacterial, archaeal and viral genome annotation based on a new approach specifically designed for annotating genomes sequenced with next generation sequencing technologies. The system is versatile and able to annotate genes even in the step of preliminary assembly of the genome. It is especially efficient detecting unexpected genes horizontally acquired from bacterial or archaeal distant genomes, phages, plasmids, and mobile elements. From the initial phases of the gene annotation process, BG7 exploits the massive availability of annotated protein sequences in databases. BG7 predicts ORFs and infers their function based on protein similarity with a wide set of reference proteins, integrating ORF prediction and functional annotation phases in just one step. BG7 is especially tolerant to sequencing errors in start and stop codons, to frameshifts, and to assembly or scaffolding errors. The system is also tolerant to the high level of gene fragmentation which is frequently found in not fully assembled genomes. BG7 current version - which is developed in Java, takes advantage of Amazon Web Services (AWS cloud computing features, but it can also be run locally in any operating system. BG7 is a fast, automated and scalable system that can cope with the challenge of analyzing the huge amount of genomes that are being sequenced with NGS technologies. Its capabilities and efficiency were demonstrated in the 2011 EHEC Germany outbreak in which BG7 was used to get the first annotations right the next day after the first entero-hemorrhagic E. coli genome sequences were made publicly available. The suitability of BG7 for genome annotation has been proved for Illumina, 454, Ion Torrent, and PacBio sequencing technologies. Besides, thanks to its plasticity, our system could be very easily adapted to work with new technologies in the future.

  14. An analysis of the uncertainty and bias in DCE-MRI measurements using the spoiled gradient-recalled echo pulse sequence

    International Nuclear Information System (INIS)

    Subashi, Ergys; Choudhury, Kingshuk R.; Johnson, G. Allan

    2014-01-01

    Purpose: The pharmacokinetic parameters derived from dynamic contrast-enhanced (DCE) MRI have been used in more than 100 phase I trials and investigator led studies. A comparison of the absolute values of these quantities requires an estimation of their respective probability distribution function (PDF). The statistical variation of the DCE-MRI measurement is analyzed by considering the fundamental sources of error in the MR signal intensity acquired with the spoiled gradient-echo (SPGR) pulse sequence. Methods: The variance in the SPGR signal intensity arises from quadrature detection and excitation flip angle inconsistency. The noise power was measured in 11 phantoms of contrast agent concentration in the range [0–1] mM (in steps of 0.1 mM) and in onein vivo acquisition of a tumor-bearing mouse. The distribution of the flip angle was determined in a uniform 10 mM CuSO 4 phantom using the spin echo double angle method. The PDF of a wide range of T1 values measured with the varying flip angle (VFA) technique was estimated through numerical simulations of the SPGR equation. The resultant uncertainty in contrast agent concentration was incorporated in the most common model of tracer exchange kinetics and the PDF of the derived pharmacokinetic parameters was studied numerically. Results: The VFA method is an unbiased technique for measuringT1 only in the absence of bias in excitation flip angle. The time-dependent concentration of the contrast agent measured in vivo is within the theoretically predicted uncertainty. The uncertainty in measuring K trans with SPGR pulse sequences is of the same order, but always higher than, the uncertainty in measuring the pre-injection longitudinal relaxation time (T1 0 ). The lowest achievable bias/uncertainty in estimating this parameter is approximately 20%–70% higher than the bias/uncertainty in the measurement of the pre-injection T1 map. The fractional volume parameters derived from the extended Tofts model were found to be

  15. Design of extraction system on grid of plasma generator electrode for pulsed electron irradiator

    International Nuclear Information System (INIS)

    Agus Purwadi; Bambang Siswanto; Lely Susita RM; Suprapto; Anjar Anggraini H; Ihwanul Azis

    2016-01-01

    It has been carried out design and study of electron extraction particularly for obtaining the electron extraction current via grid on the Plasma Generator Chamber (PGC) caused by the existence of extraction voltage U_a. Electrons of plasma surface emitted to acceleration region through emission window and then extracted acceleration by extraction voltage U_a through foil window to atmospheric region for being applied to any target. Applied extraction voltage U_a on PEI device influences the forming and energy value of electron extraction current I_e then the PGC dimension influences the product of thermal electron emission current I_e_0. It has been determinated the PGC geometry and dimension of producing electron extraction current based on arc discharge plasma current to desire on any plasma density. From the calculation yield for the value of plasma density n_e = 78 x 10"1"0 cm"-"3 and the arc discharge current Id = 80 A (pulse width τ = 100µs) used the PGC size of (80 x 20 x 40) cm"3. Emission window area of (65 x 15) cm"2 located on the low part surface of PGC is covered by a grid sheet made of stainless steel of rectangular shape and the distance of one grid hole to another is 0,25 mm each others. Current value of I_e beside depends on plasma parameters also depends on the size of grid holes. The optimum of geometry and size is rectangular with its side size of p ≈ 0,50 mm with the plasma parameters optimum (density value n_e = 10"1"6 m"-"3 and electron temperature T_e = 6 eV). From the initial experiment yields obtained that the electron extraction efficiency value α = 37,25 % on extraction voltage V = 3 kV. (author)

  16. Scaffolding and interventions between students and teachers in a Learning Design Sequence

    Directory of Open Access Journals (Sweden)

    Eva Edman Stålbrandt

    Full Text Available The aims of this paper are to develop knowledge about scaffolding when students in Swedish schools use digital educational material and to investigate what the main focus is in teachers' interventions during a Learning Design Sequence (LDS, based on a socio-cultural perspective. The results indicate that scaffolding were most common in the primary transformation unit and the most frequent type was procedural scaffolding, although all types of scaffolds; conceptual, metacognitive, procedural, strategic, affective and technical scaffolding occurred in all parts of a learning design sequence. In this study most of the teachers and students, think that using digital educational material requires more and other forms of scaffolding and concerning teacher interventions teachers interact both supportively and restrictively according to students' learning process. Reasons for that are connected to the content of the intervention and whether teachers intervene together with the students or not.

  17. The concept of biologically motivated time-pulse information processing for design and construction of multifunctional devices of neural logic

    Science.gov (United States)

    Krasilenko, Vladimir G.; Nikolsky, Alexander I.; Lazarev, Alexander A.; Sholohov, V. I.

    2004-04-01

    On the basis of the analysis of advanced approaches and optoelectronic systems for realization of various logics: two-valued, multi-valued, neural, continuous and others the biologically motivated time-pulse conception for building of multifunctional reconfigurable universal elements with programmable tuning for neurobiologic is grounded. The concept consists in usage of preliminary conversion of multi-level or continuous optic 2D signals into durations of time intervals (the conversion to a temporal area) and further use of time-pulse two-level digital signals that allows to ensure fast tuning to a required function of two-valued, multi-valued and other logics. It is shown that optoelectronic pulse-phase and pulse-width modulators (PPM and PWM) are the base elements for that. Time-pulse coding universal elements for matrix two-valued and multi-valued logics and structural-functional design of universal time-pulse coding elements for neural (continuous) logic are considered in the article. PPMs realized on 1.5μm technology CMOS transistors are considered. The PPMs have parameters: the input photocurrent range is 10nA...10μA the conversion period is 10μs...1ms the conversion relative error is 0.1...1%; the conversion law is ramp; the supply voltage is 3V and the power consumption is 83μW. The small power consumption of such PPMs enables successfully their integration in 2Darray with size of 128x128 elements and more and productivity equals 1...10 Giga continuous logic operations per sec.

  18. Experimental design-based functional mining and characterization of high-throughput sequencing data in the sequence read archive.

    Directory of Open Access Journals (Sweden)

    Takeru Nakazato

    Full Text Available High-throughput sequencing technology, also called next-generation sequencing (NGS, has the potential to revolutionize the whole process of genome sequencing, transcriptomics, and epigenetics. Sequencing data is captured in a public primary data archive, the Sequence Read Archive (SRA. As of January 2013, data from more than 14,000 projects have been submitted to SRA, which is double that of the previous year. Researchers can download raw sequence data from SRA website to perform further analyses and to compare with their own data. However, it is extremely difficult to search entries and download raw sequences of interests with SRA because the data structure is complicated, and experimental conditions along with raw sequences are partly described in natural language. Additionally, some sequences are of inconsistent quality because anyone can submit sequencing data to SRA with no quality check. Therefore, as a criterion of data quality, we focused on SRA entries that were cited in journal articles. We extracted SRA IDs and PubMed IDs (PMIDs from SRA and full-text versions of journal articles and retrieved 2748 SRA ID-PMID pairs. We constructed a publication list referring to SRA entries. Since, one of the main themes of -omics analyses is clarification of disease mechanisms, we also characterized SRA entries by disease keywords, according to the Medical Subject Headings (MeSH extracted from articles assigned to each SRA entry. We obtained 989 SRA ID-MeSH disease term pairs, and constructed a disease list referring to SRA data. We previously developed feature profiles of diseases in a system called "Gendoo". We generated hyperlinks between diseases extracted from SRA and the feature profiles of it. The developed project, publication and disease lists resulting from this study are available at our web service, called "DBCLS SRA" (http://sra.dbcls.jp/. This service will improve accessibility to high-quality data from SRA.

  19. Design and Construction of an Autonomous Low-Cost Pulse Height Analyzer and a Single Channel Analyzer for Moessbauer Spectroscopy

    International Nuclear Information System (INIS)

    Velasquez, A.A.; Trujillo, J.M.; Morales, A.L.; Tobon, J.E.; Gancedo, J.R.; Reyes, L.

    2005-01-01

    A multichannel analyzer (MCA) and a single channel-analyzer (SCA) for Moessbauer spectrometry application have been designed and built. Both systems include low-cost digital and analog components. A microcontroller manages, either in PHA or MCS mode, the data acquisition, data storage and setting of the pulse discriminator limits. The user can monitor the system from an external PC through the serial port with the RS232 communication protocol. A graphic interface made with the LabVIEW software allows the user to adjust digitally the lower and upper limits of the pulse discriminator, and to visualize as well as save the PHA spectra in a file. The system has been tested using a 57Co radioactive source and several iron compounds, yielding satisfactory results. The low cost of its design, construction and maintenance make this equipment an attractive choice when assembling a Moessbauer spectrometer

  20. Gadobenate dimeglumine-enhanced MR of VX2 carcinoma in rabbit liver: usefulness of the delayed phase imaging and optimal pulse sequence

    International Nuclear Information System (INIS)

    Cho, Seung Il; Lee, Jeong Min; Kim, Young Kon; Kim, Chong Soo

    2002-01-01

    To assess the diagnostic value of delayed imaging using gadobenate dimeglumine (MultiHance) and to determine the optimal pulse sequence for the detection of VX2 carcinoma lesions in the rabbit. Twelve VX2 carcinomas implanted in the livers of eleven New Zealand rabbits were studied. All patients underwent an MR protocal consisting of precontrast T2-and T1-weighted sequences, followed by repetition of the T1-weighted sequence at 0 to 30 (arterial phase). 31-60 (portal phase), and 40 minutes (delayed phase) after the intravenous administration of 0.1 mmol/kg of gadobenate dimeglumine. The signal-to-noise ratio (SNR) of the liver and VX2 tumor, and the lesion-to-liver contrast-to-noise ratio (CNR) of precontrast and postcontrast MR images were quantitatively analyzed, and two experienced radiologists evaluated image quality in terms of lesion conspicuity, artifact, mass delineation, and vascular anatomy. Liver SNR was significantly higher at delayed imaging than at precontrast, arterial, and portal imaging (p<0.05), while lesion SNR was significantly higher at delayed imaging than at precontrast imaging (p<0.05). Lesion CNR was higher at delayed imaging than at precontrast and portal phase imaging (p<0.05), but there was no difference between arterial and delayed imaging. The latter provided better mass delineation than precontrast, arterial and portal phase imaging (p<0.05). While in terms of lesion conspicuity and vascular anatomy, the delayed phase was better than the arterial phase (p<0.05) but similar to the precontrast and portal phase. During the delayed phase, the gradient-echo sequence showed better results than the spin-echo in terms of liver SNR, and lesion SNR and CNR (p<0.05). Because it provides better lesion conspicuity and mass delineation by improving liver SNR and lesion-to-liver CNR, the addition of the delayed phase to a dynamic MRI sequence after gadobenate dimeglumine adminstration facilitates lesion detection. For delayed-phase imaging, the

  1. Gadobenate dimeglumine-enhanced MR of VX2 carcinoma in rabbit liver: usefulness of the delayed phase imaging and optimal pulse sequence

    Energy Technology Data Exchange (ETDEWEB)

    Cho, Seung Il; Lee, Jeong Min; Kim, Young Kon; Kim, Chong Soo [College of Medicine, Chonbuk National Univ., Chonju (Korea, Republic of)

    2002-07-01

    To assess the diagnostic value of delayed imaging using gadobenate dimeglumine (MultiHance) and to determine the optimal pulse sequence for the detection of VX2 carcinoma lesions in the rabbit. Twelve VX2 carcinomas implanted in the livers of eleven New Zealand rabbits were studied. All patients underwent an MR protocal consisting of precontrast T2-and T1-weighted sequences, followed by repetition of the T1-weighted sequence at 0 to 30 (arterial phase). 31-60 (portal phase), and 40 minutes (delayed phase) after the intravenous administration of 0.1 mmol/kg of gadobenate dimeglumine. The signal-to-noise ratio (SNR) of the liver and VX2 tumor, and the lesion-to-liver contrast-to-noise ratio (CNR) of precontrast and postcontrast MR images were quantitatively analyzed, and two experienced radiologists evaluated image quality in terms of lesion conspicuity, artifact, mass delineation, and vascular anatomy. Liver SNR was significantly higher at delayed imaging than at precontrast, arterial, and portal imaging (p<0.05), while lesion SNR was significantly higher at delayed imaging than at precontrast imaging (p<0.05). Lesion CNR was higher at delayed imaging than at precontrast and portal phase imaging (p<0.05), but there was no difference between arterial and delayed imaging. The latter provided better mass delineation than precontrast, arterial and portal phase imaging (p<0.05). While in terms of lesion conspicuity and vascular anatomy, the delayed phase was better than the arterial phase (p<0.05) but similar to the precontrast and portal phase. During the delayed phase, the gradient-echo sequence showed better results than the spin-echo in terms of liver SNR, and lesion SNR and CNR (p<0.05). Because it provides better lesion conspicuity and mass delineation by improving liver SNR and lesion-to-liver CNR, the addition of the delayed phase to a dynamic MRI sequence after gadobenate dimeglumine adminstration facilitates lesion detection. For delayed-phase imaging, the

  2. Efficacy of Pulsed-Field Gel Electrophoresis and Repetitive Element Sequence-Based PCR in Typing of Salmonella Isolates from Assam, India.

    Science.gov (United States)

    Gogoi, Purnima; Borah, Probodh; Hussain, Iftikar; Das, Leena; Hazarika, Girin; Tamuly, Shantanu; Barkalita, Luit Moni

    2018-05-01

    A total of 12 Salmonella isolates belonging to different serovars, viz , Salmonella enterica serovar Enteritidis ( n = 4), Salmonella enterica serovar Weltevreden ( n = 4), Salmonella enterica serovar Newport ( n = 1), Salmonella enterica serovar Litchifield ( n = 1), and untypeable strains ( n = 2) were isolated from 332 diarrheic fecal samples collected from animals, birds, and humans. Of the two molecular typing methods applied, viz , repetitive element sequence-based PCR (REP-PCR) and pulsed-field gel electrophoresis (PFGE), PFGE could clearly differentiate the strains belonging to different serovars as well as differentiate between strains of the same serovar with respect to their source of isolation, whereas REP-PCR could not differentiate between strains of the same serovar. Thus, it can be suggested that PFGE is more useful and appropriate for molecular typing of Salmonella isolates during epidemiological investigations than REP-PCR. Copyright © 2018 American Society for Microbiology.

  3. Design and study of photomultiplier pulse-shaping amplifier powered by the current flowing through a voltage divider

    International Nuclear Information System (INIS)

    Vladimir Popov

    2003-01-01

    A new version of Photomultiplier Tube (PMT) pulse amplifier, entirely powered by the current flowing through the base voltage divider, was designed and tested. This amplifier was designed for application in the JLAB G0 Experiment E00-006 as a part of high voltage base for XP2262 Photonis PMT. According to JLAB G0 experiment requirement, these PMT's operate with plastic scintillators at high counting rate (about MHz). Tests in JLAB experimental Hall C indicate that low energy gamma background cause up to 0.1 mA of PMT average anode current (without amplifier). At this radiation condition, PMT gain decreases by 50% within about 1 month of operation. The amplifier needs to reduce PMT anode current and to shape PMT anode pulse prior to sending it through a long cable line (more then 400 ft of RG-213 and RG-58 coax cables). Shaping of the PMT output pulse helps to reduce attenuation effect of the long cable line without significant reduction of timing accuracy. The results of this study of designed amplifier and PMT plus amplifier system are presented

  4. Novel design of high voltage pulse source for efficient dielectric barrier discharge generation by using silicon diodes for alternating current

    Science.gov (United States)

    Truong, Hoa Thi; Hayashi, Misaki; Uesugi, Yoshihiko; Tanaka, Yasunori; Ishijima, Tatsuo

    2017-06-01

    This work focuses on design, construction, and optimization of configuration of a novel high voltage pulse power source for large-scale dielectric barrier discharge (DBD) generation. The pulses were generated by using the high-speed switching characteristic of an inexpensive device called silicon diodes for alternating current and the self-terminated characteristic of DBD. The operation started to be powered by a primary DC low voltage power supply flexibly equipped with a commercial DC power supply, or a battery, or DC output of an independent photovoltaic system without transformer employment. This flexible connection to different types of primary power supply could provide a promising solution for the application of DBD, especially in the area without power grid connection. The simple modular structure, non-control requirement, transformer elimination, and a minimum number of levels in voltage conversion could lead to a reduction in size, weight, simple maintenance, low cost of installation, and high scalability of a DBD generator. The performance of this pulse source has been validated by a load of resistor. A good agreement between theoretically estimated and experimentally measured responses has been achieved. The pulse source has also been successfully applied for an efficient DBD plasma generation.

  5. Design of a 28 MW pulse facility for testing superconducting coils to several hundred megajoules capacity

    International Nuclear Information System (INIS)

    Vogel, H.F.

    1980-01-01

    Railway traction motors are available in unit sizes convenient for installation and series-parallel grouping. They are rugged. Industry builds and refurbishes them with good economy and in quantities replenishing the rolling stock. We find them well suited for reversing the current in a superconducting winding. We focus on a pulsed energy of 20 to 100 MJ, discussing our analysis and facility planning. Limitations are imposed by the following maximum numbers tolerated by the motor - pulsed current of 3.0 to 3.5 kA, current change of 40 kA/s, and pulsed voltage of 1.8 kV. Hence, the number of machines needed in parallel follows from the coil current and its rate of change. The number in series is determined by the voltage. The power transfer is limited by the torsional strength of the motor shaft to a value affected by the flywheel mass

  6. Numerical design of RNnν symmetry-based RF pulse schemes for recoupling and decoupling of nuclear spin interactions at high MAS frequencies

    International Nuclear Information System (INIS)

    Herbst, Christian; Herbst, Jirada; Leppert, Joerg; Ohlenschlaeger, Oliver; Goerlach, Matthias; Ramachandran, Ramadurai

    2009-01-01

    An approach for the efficient implementation of RN n ν symmetry-based pulse schemes that are often employed for recoupling and decoupling of nuclear spin interactions in biological solid state NMR investigations is demonstrated at high magic-angle spinning frequencies. RF pulse sequences belonging to the RN n ν symmetry involve the repeated application of the pulse sandwich {R φ R -φ }, corresponding to a propagator U RF = exp(-i4φI z ), where φ = πν/N and R is typically a pulse that rotates the nuclear spins through 180 o about the x-axis. In this study, broadband, phase-modulated 180 o pulses of constant amplitude were employed as the initial 'R' element and the phase-modulation profile of this 'R' element was numerically optimised for generating RN n ν symmetry-based pulse schemes with satisfactory magnetisation transfer characteristics. At representative MAS frequencies, RF pulse sequences were implemented for achieving 13 C- 13 C double-quantum dipolar recoupling and through bond scalar coupling mediated chemical shift correlation and evaluated via numerical simulations and experimental measurements. The results from these investigations are presented here

  7. Conceptual design and implementation of Pulse Automation and Scheduling System for KSTAR

    International Nuclear Information System (INIS)

    Lee, Woongryol; Lee, Taegu; Park, Jinseop; Hong, Jaesic; Hahn, Sanghee; Han, Hyunsun; Woo, Minho; Park, Kaprai

    2015-01-01

    Highlights: • The world clock based automatic sequential operation manipulator. • Configuration of the Pulse Automation System (PAS) and the Pulse Scheduling System (PSS) • Providing of operational information in voice through an Ethernet interface. • A perceptional operation status, easy time manipulator, and intuitive man machine interface for the purpose of the Tokamak operation. • Generation of the plasma disruption information. - Abstract: The world clock based automatic sequential operation manipulator has been developed and begin to work on the 7th campaign in KSTAR Tokamak. The Pulse Automation and Scheduling System (PASS) divided into Pulse Automation System (PAS) and Pulse Scheduling System (PSS). The PAS is on the online control system and it has communicated with many other local control systems. Before PASS, the plasma experiment was performed manually by using Central Control System (CCS). However the PASS currently manipulates the sequential operation of KSTAR with the programmed shot interval time. It provides readiness check routine, shot time handler, and local system monitoring functions. The PASS has no hardware dependency and it was configured with EPICS extensions. The Real Time Monitoring System, PCS-GATE, Automatic Reporting System, Central Control System, and Timing Synchronization System are well organized and they communicate to each other. The PASS provides perceptual operation status, easy time manipulator, and intuitive man machine interface. The plasma disruption information which is used in the KSTAR standard software framework also comes from the PASS. We describe the functions and system architecture of the Pulse Automation System in this paper. The PSS will be specified inside PASS for the purpose of intelligent system parameterization.

  8. Conceptual design and implementation of Pulse Automation and Scheduling System for KSTAR

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Woongryol, E-mail: wrlee@nfri.re.kr; Lee, Taegu; Park, Jinseop; Hong, Jaesic; Hahn, Sanghee; Han, Hyunsun; Woo, Minho; Park, Kaprai

    2015-10-15

    Highlights: • The world clock based automatic sequential operation manipulator. • Configuration of the Pulse Automation System (PAS) and the Pulse Scheduling System (PSS) • Providing of operational information in voice through an Ethernet interface. • A perceptional operation status, easy time manipulator, and intuitive man machine interface for the purpose of the Tokamak operation. • Generation of the plasma disruption information. - Abstract: The world clock based automatic sequential operation manipulator has been developed and begin to work on the 7th campaign in KSTAR Tokamak. The Pulse Automation and Scheduling System (PASS) divided into Pulse Automation System (PAS) and Pulse Scheduling System (PSS). The PAS is on the online control system and it has communicated with many other local control systems. Before PASS, the plasma experiment was performed manually by using Central Control System (CCS). However the PASS currently manipulates the sequential operation of KSTAR with the programmed shot interval time. It provides readiness check routine, shot time handler, and local system monitoring functions. The PASS has no hardware dependency and it was configured with EPICS extensions. The Real Time Monitoring System, PCS-GATE, Automatic Reporting System, Central Control System, and Timing Synchronization System are well organized and they communicate to each other. The PASS provides perceptual operation status, easy time manipulator, and intuitive man machine interface. The plasma disruption information which is used in the KSTAR standard software framework also comes from the PASS. We describe the functions and system architecture of the Pulse Automation System in this paper. The PSS will be specified inside PASS for the purpose of intelligent system parameterization.

  9. Preliminary Calculation for Plasma Chamber Design of Pulsed Electron Source Based on Plasma

    International Nuclear Information System (INIS)

    Widdi Usada

    2009-01-01

    This paper described the characteristics of pulsed electron sources with anode-cathode distance of 5 cm, electrode diameter of 10 cm, driven by capacitor energy of 25 J. The preliminary results showed that if the system is operated with diode resistance is 1.6 Ω, plasma resistance is 0.14 Ω, and β is 0.94, the achieved of plasma voltage is 640 V, its current is 4.395 kA with its pulse width of 0.8 μsecond. According to breakdown voltage based on Paschen empirical formula, with this achieved voltage, this system could be operated for operation pressure of 1 torr. (author)

  10. Design challenges for matrix assisted pulsed laser evaporation and infrared resonant laser evaporation equipment

    Science.gov (United States)

    Greer, James A.

    2011-11-01

    Since the development of the Matrix Assisted Pulsed Laser Evaporation (MAPLE) process by the Naval Research Laboratory (NRL) in the late 1990s, MAPLE has become an active area of research for the deposition of a variety of polymer, biological, and organic thin films. As is often the case with advancements in thin-film deposition techniques new technology sometimes evolves by making minor or major adjustments to existing deposition process equipment and techniques. This is usually the quickest and least expensive way to try out new ideas and to "push the envelope" in order to obtain new and unique scientific results as quickly as possible. This process of "tweaking" current equipment usually works to some degree, but once the new process is further refined overall designs for a new deposition tool based on the critical attributes of the new process typically help capitalize more fully on the all the salient features of the new and improved process. This certainly has been true for the MAPLE process. In fact the first MAPLE experiments the polymer/solvent matrix was mixed and poured into a copper holder held at LN2 temperature on a laboratory counter top. The holder was then quickly placed onto a LN2 cooled reservoir in a vacuum deposition chamber and placed in a vertical position on a LN2 cooled stage and pumped down as quickly as possible. If the sample was not placed into the chamber quickly enough the frozen matrix would melt and drip into the bottom of the chamber onto the chambers main gate valve making a bit of a mess. However, skilled and motivated scientists usually worked quickly enough to make this process work most of the time. The initial results from these experiments were encouraging and led to several publications which sparked considerable interest in this newly developed technique Clearly this approach provided the vision that MAPLE was a viable deposition process, but the equipment was not optimal for conducting MAPLE experiments on a regular basis

  11. The use of linear programming techniques to design optimal digital filters for pulse shaping and channel equalization

    Science.gov (United States)

    Houts, R. C.; Burlage, D. W.

    1972-01-01

    A time domain technique is developed to design finite-duration impulse response digital filters using linear programming. Two related applications of this technique in data transmission systems are considered. The first is the design of pulse shaping digital filters to generate or detect signaling waveforms transmitted over bandlimited channels that are assumed to have ideal low pass or bandpass characteristics. The second is the design of digital filters to be used as preset equalizers in cascade with channels that have known impulse response characteristics. Example designs are presented which illustrate that excellent waveforms can be generated with frequency-sampling filters and the ease with which digital transversal filters can be designed for preset equalization.

  12. Increasing sync rate of pulse-coupled oscillators via phase response function design: theory and application to wireless networks.

    Science.gov (United States)

    Wang, Yongqiang; Núñez, Felipe; Doyle, Francis J

    2012-07-25

    This paper addresses the synchronization rate of weakly connected pulse-coupled oscillators (PCOs). We prove that besides coupling strength, the phase response function is also a determinant of synchronization rate. Inspired by the result, we propose to increase the synchronization rate of PCOs by designing the phase response function. This has important significance in PCO-based clock synchronization of wireless networks. By designing the phase response function, synchronization rate is increased even under a fixed transmission power. Given that energy consumption in synchronization is determined by the product of synchronization time and transformation power, the new strategy reduces energy consumption in clock synchronization. QualNet experiments confirm the theoretical results.

  13. A methodological approach for designing and sequencing product families in Reconfigurable Disassembly Systems

    Directory of Open Access Journals (Sweden)

    Ignacio Eguia

    2011-10-01

    Full Text Available Purpose: A Reconfigurable Disassembly System (RDS represents a new paradigm of automated disassembly system that uses reconfigurable manufacturing technology for fast adaptation to changes in the quantity and mix of products to disassemble. This paper deals with a methodology for designing and sequencing product families in RDS. Design/methodology/approach: The methodology is developed in a two-phase approach, where products are first grouped into families and then families are sequenced through the RDS, computing the required machines and modules configuration for each family. Products are grouped into families based on their common features using a Hierarchical Clustering Algorithm. The optimal sequence of the product families is calculated using a Mixed-Integer Linear Programming model minimizing reconfigurability and operational costs. Findings: This paper is focused to enable reconfigurable manufacturing technologies to attain some degree of adaptability during disassembly automation design using modular machine tools. Research limitations/implications: The MILP model proposed for the second phase is similar to the well-known Travelling Salesman Problem (TSP and therefore its complexity grows exponentially with the number of products to disassemble. In real-world problems, which a higher number of products, it may be advisable to solve the model approximately with heuristics. Practical implications: The importance of industrial recycling and remanufacturing is growing due to increasing environmental and economic pressures. Disassembly is an important part of remanufacturing systems for reuse and recycling purposes. Automatic disassembly techniques have a growing number of applications in the area of electronics, aerospace, construction and industrial equipment. In this paper, a design and scheduling approach is proposed to apply in this area. Originality/value: This paper presents a new concept called Reconfigurable Disassembly System

  14. Array design considerations for exploitation of stable weakly dispersive modal pulses in the deep ocean

    Science.gov (United States)

    Udovydchenkov, Ilya A.

    2017-07-01

    Modal pulses are broadband contributions to an acoustic wave field with fixed mode number. Stable weakly dispersive modal pulses (SWDMPs) are special modal pulses that are characterized by weak dispersion and weak scattering-induced broadening and are thus suitable for communications applications. This paper investigates, using numerical simulations, receiver array requirements for recovering information carried by SWDMPs under various signal-to-noise ratio conditions without performing channel equalization. Two groups of weakly dispersive modal pulses are common in typical mid-latitude deep ocean environments: the lowest order modes (typically modes 1-3 at 75 Hz), and intermediate order modes whose waveguide invariant is near-zero (often around mode 20 at 75 Hz). Information loss is quantified by the bit error rate (BER) of a recovered binary phase-coded signal. With fixed receiver depths, low BERs (less than 1%) are achieved at ranges up to 400 km with three hydrophones for mode 1 with 90% probability and with 34 hydrophones for mode 20 with 80% probability. With optimal receiver depths, depending on propagation range, only a few, sometimes only two, hydrophones are often sufficient for low BERs, even with intermediate mode numbers. Full modal resolution is unnecessary to achieve low BERs. Thus, a flexible receiver array of autonomous vehicles can outperform a cabled array.

  15. Design and Construction of a Microcontroller-Based Ventilator Synchronized with Pulse Oximeter.

    Science.gov (United States)

    Gölcük, Adem; Işık, Hakan; Güler, İnan

    2016-07-01

    This study aims to introduce a novel device with which mechanical ventilator and pulse oximeter work in synchronization. Serial communication technique was used to enable communication between the pulse oximeter and the ventilator. The SpO2 value and the pulse rate read on the pulse oximeter were transmitted to the mechanical ventilator through transmitter (Tx) and receiver (Rx) lines. The fuzzy-logic-based software developed for the mechanical ventilator interprets these values and calculates the percentage of oxygen (FiO2) and Positive End-Expiratory Pressure (PEEP) to be delivered to the patient. The fuzzy-logic-based software was developed to check the changing medical states of patients and to produce new results (FiO2 ve PEEP) according to each new state. FiO2 and PEEP values delivered from the ventilator to the patient can be calculated in this way without requiring any arterial blood gas analysis. Our experiments and the feedbacks from physicians show that this device makes it possible to obtain more successful results when compared to the current practices.

  16. Method for automatic localization of MR-visible markers using morphological image processing and conventional pulse sequences: feasibility for image-guided procedures.

    Science.gov (United States)

    Busse, Harald; Trampel, Robert; Gründer, Wilfried; Moche, Michael; Kahn, Thomas

    2007-10-01

    To evaluate the feasibility and accuracy of an automated method to determine the 3D position of MR-visible markers. Inductively coupled RF coils were imaged in a whole-body 1.5T scanner using the body coil and two conventional gradient echo sequences (FLASH and TrueFISP) and large imaging volumes up to (300 mm(3)). To minimize background signals, a flip angle of approximately 1 degrees was used. Morphological 2D image processing in orthogonal scan planes was used to determine the 3D positions of a configuration of three fiducial markers (FMC). The accuracies of the marker positions and of the orientation of the plane defined by the FMC were evaluated at various distances r(M) from the isocenter. Fiducial marker detection with conventional equipment (pulse sequences, imaging coils) was very reliable and highly reproducible over a wide range of experimental conditions. For r(M)

  17. Assessment of myocardial infarction in mice by Late Gadolinium Enhancement MR imaging using an inversion recovery pulse sequence at 9.4T

    Directory of Open Access Journals (Sweden)

    Herlihy Amy H

    2008-01-01

    Full Text Available Abstract Purpose To demonstrate the feasibility of using an inversion recovery pulse sequence and to define the optimal inversion time (TI to assess myocardial infarction in mice by late gadolinium enhancement (LGE MRI at 9.4T, and to obtain the maximal contrast between the infarcted and the viable myocardium. Methods MRI was performed at 9.4T in mice, two days after induction of myocardial infarction (n = 4. For cardiovascular MR imaging, a segmented magnetization-prepared fast low angle shot (MP-FLASH sequence was used with varied TIs ranging from 40 to 420 ms following administration of gadolinium-DTPA at 0.6 mmol/kg. Contrast-to-noise (CNR and signal-to-noise ratio (SNR were measured and compared for each myocardial region of interest (ROI. Results The optimal TI, which corresponded to a minimum SNR in the normal myocardium, was 268 ms ± 27.3. The SNR in the viable myocardium was significantly different from that found in the infarcted myocardium (17.2 ± 2.4 vs 82.1 ± 10.8; p = 0.006 leading to a maximal relative SI (Signal Intensity between those two areas (344.9 ± 60.4. Conclusion Despite the rapid heart rate in mice, our study demonstrates that LGE MRI can be performed at 9.4T using a protocol similar to the one used for clinical MR diagnosis of myocardial infarction.

  18. A Review of Study Designs and Statistical Methods for Genomic Epidemiology Studies using Next Generation Sequencing

    Directory of Open Access Journals (Sweden)

    Qian eWang

    2015-04-01

    Full Text Available Results from numerous linkage and association studies have greatly deepened scientists’ understanding of the genetic basis of many human diseases, yet some important questions remain unanswered. For example, although a large number of disease-associated loci have been identified from genome-wide association studies (GWAS in the past 10 years, it is challenging to interpret these results as most disease-associated markers have no clear functional roles in disease etiology, and all the identified genomic factors only explain a small portion of disease heritability. With the help of next-generation sequencing (NGS, diverse types of genomic and epigenetic variations can be detected with high accuracy. More importantly, instead of using linkage disequilibrium to detect association signals based on a set of pre-set probes, NGS allows researchers to directly study all the variants in each individual, therefore promises opportunities for identifying functional variants and a more comprehensive dissection of disease heritability. Although the current scale of NGS studies is still limited due to the high cost, the success of several recent studies suggests the great potential for applying NGS in genomic epidemiology, especially as the cost of sequencing continues to drop. In this review, we discuss several pioneer applications of NGS, summarize scientific discoveries for rare and complex diseases, and compare various study designs including targeted sequencing and whole-genome sequencing using population-based and family-based cohorts. Finally, we highlight recent advancements in statistical methods proposed for sequencing analysis, including group-based association tests, meta-analysis techniques, and annotation tools for variant prioritization.

  19. Conceptual design of PF coil system and operation scenario on inductively-operated day-long pulsed tokamak reactor

    International Nuclear Information System (INIS)

    Wang, J.F.; Yamamoto, T.; Ogawa, Y.

    1994-01-01

    It is said that disadvantages of pulsed operation in tokamak fusion reactor are fatigue problem of structural materials and an introduction of energy storage System to compensate the power during the dwell time. To overcome theses disadvantages the authors have designed an inductively-operated ultralong pulsed tokamak called (IDLT) reactor where plasma with a major radius of 10 m are employed so as to provide a magnetic flux necessary to sustain a plasma current inductively during 10 hours or more. This makes it possible to reduce the total cycle number to be around 10 4 during the life of the fusion plant. In pulsed operation reactors the shorter dwell time with a quick start-up and shut down of plasma is very convenient to realize a high availability of the power plant, but it will induce more severe conditions for the hardware design. The authors assumed the dwell time of 5∼10 minutes and analyzed the feasibility of plasma operation scenario for IDLT reactor, especially paying much attention to PF coil system. The stored energy of PF coil system becomes ∼100 GJ, which is comparable with that of toroidal field coil system. When the plasma current of 14 MA is ramped up with a time of 100 seconds, it is found that the maximum capacity of 1 GW is necessary for PF coil power supply. Engineering issues related with AC/hysterisis loss should be carefully examined

  20. Design of a bolometer for total-energy measurement of the linear coherent light source pulsed X-ray laser

    Energy Technology Data Exchange (ETDEWEB)

    Friedrich, S. [Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore CA 94550 (United States)]. E-mail: Friedrich1@llnl.gov; Li, L. [Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore CA 94550 (United States); Ott, L.L. [Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore CA 94550 (United States); Kolgani, Rajeswari M. [Department of Physics, Geosciences and Astronomy, Towson University, 8000 York Avenue, Towson MD 21252 (United States); Yong, G.J. [Department of Physics, Geosciences and Astronomy, Towson University, 8000 York Avenue, Towson MD 21252 (United States); Ali, Z.A. [Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore CA 94550 (United States); Drury, O.B. [Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore CA 94550 (United States); Ables, E. [Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore CA 94550 (United States); Bionta, R.M. [Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore CA 94550 (United States)

    2006-04-15

    We are developing a cryogenic bolometer to measure the total energy of the linear coherent light source (LCLS) free electron X-ray laser to be built at the Stanford Linear Accelerator Center. The laser will produce ultrabright X-ray pulses in the energy range between 0.8 and 8 keV with {approx}10{sup 12} photons per {approx}200 fs pulse at a repeat interval of 8 ms, and will be accompanied by a halo of spontaneous undulator radiation. The bolometer is designed to determine the total energy of each laser pulse to within <0.1%, taking into account thermal and mechanical stress to prevent melting in the LCLS beam due to its high energy density. We propose to use a magnetoresistive Nd{sub (1-} {sub x} {sub )}Sr {sub x} MnO{sub 3} sensor array at the metal-insulator transition, where the composition x is adjusted to produce the desired transition temperature. We discuss design considerations and material choices, and present numerical simulations of the thermal response.

  1. Test-retest reliability of pulse amplitude tonometry measures of vascular endothelial function: implications for clinical trial design.

    Science.gov (United States)

    McCrea, Cindy E; Skulas-Ray, Ann C; Chow, Mosuk; West, Sheila G

    2012-02-01

    Endothelial dysfunction is an important outcome for assessing vascular health in intervention studies. However, reliability of the standard non-invasive method (flow-mediated dilation) is a significant challenge for clinical applications and multicenter trials. We evaluated the repeatability of pulse amplitude tonometry (PAT) to measure change in pulse wave amplitude during reactive hyperemia (Itamar Medical Ltd, Caesarea, Israel). Twenty healthy adults completed two PAT tests (mean interval = 19.5 days) under standardized conditions. PAT-derived measures of endothelial function (reactive hyperemia index, RHI) and arterial stiffness (augmentation index, AI) showed strong repeatability (intra-class correlations = 0.74 and 0.83, respectively). To guide future research, we also analyzed sample size requirements for a range of effect sizes. A crossover design powered at 0.90 requires 28 participants to detect a 15% change in RHI. Our study is the first to show that PAT measurements are repeatable in adults over an interval greater than 1 week.

  2. Conceptual design of a 15T-class pulsed conductor with fiber-reinforced Nb3Sn superconductor

    International Nuclear Information System (INIS)

    Tateishi, Hiroshi; Arai, Kazuaki; Agatsuma, Koh

    1997-01-01

    We have been developing a new type of Nb 3 Sn superconductor with high elastic modulus fibers for the application of high field pulsed superconducting magnets. We call this type of conductor FRS(Fiber-Reinforced Superconductor). This paper tries to show that FRS has great potential for the construction of a 15T-class pulsed magnet, with the size of which equals to that of the central solenoid of ITER(International Thermonuclear Experimental Reactor), because each monofilamentary FRS can support the part of hoop stress under operation of the magnet. Conceptual design of a basic strand with monofilamentary FRS, construction of the first- and second- level subcable, cooling condition of CICC(Cable in conduit conductor), stability and ac losses of the conductor are discussed. (author)

  3. Description of design and operating procedures of small scale pulsed columns for experimental study on extraction process under abnormal conditions

    International Nuclear Information System (INIS)

    Wakamatsu, Sachio; Sato, Makoto; Kubo, Nobuo; Sakurai, Satoshi; Ami, Norio

    1990-09-01

    To study transient phenomena in a pulsed column co-decontamination process under abnormal conditions, a pair of small scale pulsed columns (effective extraction section; I.D: 25 mm, H.: 2260 mm) for extraction and scrub were installed in the laboratory. An evaporator of aqueous uranium solution was also equipped to reuse concentrated solution as the feed. This report describes several items to have been carefully treated in design, specification and operating procedure of the apparatuses for the experiments. Also described are the procedures for preparation of the feed solutions and treatments of the solutions after the experiments; back-extraction of uranium, diluent washing, alkaline washing and concentration of uranium solution. (author)

  4. Primer3_masker: integrating masking of template sequence with primer design software.

    Science.gov (United States)

    Kõressaar, Triinu; Lepamets, Maarja; Kaplinski, Lauris; Raime, Kairi; Andreson, Reidar; Remm, Maido

    2018-06-01

    Designing PCR primers for amplifying regions of eukaryotic genomes is a complicated task because the genomes contain a large number of repeat sequences and other regions unsuitable for amplification by PCR. We have developed a novel k-mer based masking method that uses a statistical model to detect and mask failure-prone regions on the DNA template prior to primer design. We implemented the software as a standalone software primer3_masker and integrated it into the primer design program Primer3. The standalone version of primer3_masker is implemented in C. The source code is freely available at https://github.com/bioinfo-ut/primer3_masker/ (standalone version for Linux and macOS) and at https://github.com/primer3-org/primer3/ (integrated version). Primer3 web application that allows masking sequences of 196 animal and plant genomes is available at http://primer3.ut.ee/. maido.remm@ut.ee. Supplementary data are available at Bioinformatics online.

  5. Designing sequence to control protein function in an EF-hand protein.

    Science.gov (United States)

    Bunick, Christopher G; Nelson, Melanie R; Mangahas, Sheryll; Hunter, Michael J; Sheehan, Jonathan H; Mizoue, Laura S; Bunick, Gerard J; Chazin, Walter J

    2004-05-19

    The extent of conformational change that calcium binding induces in EF-hand proteins is a key biochemical property specifying Ca(2+) sensor versus signal modulator function. To understand how differences in amino acid sequence lead to differences in the response to Ca(2+) binding, comparative analyses of sequence and structures, combined with model building, were used to develop hypotheses about which amino acid residues control Ca(2+)-induced conformational changes. These results were used to generate a first design of calbindomodulin (CBM-1), a calbindin D(9k) re-engineered with 15 mutations to respond to Ca(2+) binding with a conformational change similar to that of calmodulin. The gene for CBM-1 was synthesized, and the protein was expressed and purified. Remarkably, this protein did not exhibit any non-native-like molten globule properties despite the large number of mutations and the nonconservative nature of some of them. Ca(2+)-induced changes in CD intensity and in the binding of the hydrophobic probe, ANS, implied that CBM-1 does undergo Ca(2+) sensorlike conformational changes. The X-ray crystal structure of Ca(2+)-CBM-1 determined at 1.44 A resolution reveals the anticipated increase in hydrophobic surface area relative to the wild-type protein. A nascent calmodulin-like hydrophobic docking surface was also found, though it is occluded by the inter-EF-hand loop. The results from this first calbindomodulin design are discussed in terms of progress toward understanding the relationships between amino acid sequence, protein structure, and protein function for EF-hand CaBPs, as well as the additional mutations for the next CBM design.

  6. Technical design study. BESSY VSR. Variable pulse length Storage Ring. Upgrade of BESSY II

    International Nuclear Information System (INIS)

    2015-06-01

    BESSY-VSR is a novel approach to create in the Storage Ring BESSY II long and short photon pulses simultaneously for all beam lines through a pair of superconducting bunch compression cavities. Pulse-picking schemes will allow each individual user to freely switch between high average flux for X-ray spectroscopy, microscopy and scattering and picosecond pulses up to 500 MHz repetition rate for dynamic studies. Thus BESSY-VSR preserves the present average brilliance of BESSY II and adds the new capability of user accessible picosecond pulses at high repetition rate. In addition, high intensities for THz radiation with intrinsic synchronization of THz and X-ray pulses can be extracted from BESSY-VSR. For the scientific challenges of quantum materials for energy, future information technologies and basic energy science BESSY-VSR is the multi-user Synchrotron Radiation facility that allows with the flexible switching between high repetition rate for picosecond dynamics and high average brightness to move classical 3rd generation Synchrotron Radiation science from the observation of static properties and their quantum mechanical description towards the function and the control of materials properties, technologically relevant switching processes and chemical dynamics and kinetics on the picosecond time scale. Strategic relevance of BESSY-VSR for science with photons BESSY-VSR creates for the highly productive Synchrotron Radiation community a uniquely attractive multi user storage ring adding the soft X-ray picosecond dynamics at MHz repetition rate. In particular investigations on reversible dynamics and switching in molecular systems and materials are accessible in a non destructive way. The investigations with X-rays from BESSY-VSR are highly complementary and compatible to dynamic studies conducted by users with optical lasers at their home universities and laboratories. Technologically, the employed superconducting bunch compression cavities in BESSY-VSR are a

  7. Technical design study. BESSY VSR. Variable pulse length Storage Ring. Upgrade of BESSY II

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2015-06-15

    BESSY-VSR is a novel approach to create in the Storage Ring BESSY II long and short photon pulses simultaneously for all beam lines through a pair of superconducting bunch compression cavities. Pulse-picking schemes will allow each individual user to freely switch between high average flux for X-ray spectroscopy, microscopy and scattering and picosecond pulses up to 500 MHz repetition rate for dynamic studies. Thus BESSY-VSR preserves the present average brilliance of BESSY II and adds the new capability of user accessible picosecond pulses at high repetition rate. In addition, high intensities for THz radiation with intrinsic synchronization of THz and X-ray pulses can be extracted from BESSY-VSR. For the scientific challenges of quantum materials for energy, future information technologies and basic energy science BESSY-VSR is the multi-user Synchrotron Radiation facility that allows with the flexible switching between high repetition rate for picosecond dynamics and high average brightness to move classical 3rd generation Synchrotron Radiation science from the observation of static properties and their quantum mechanical description towards the function and the control of materials properties, technologically relevant switching processes and chemical dynamics and kinetics on the picosecond time scale. Strategic relevance of BESSY-VSR for science with photons BESSY-VSR creates for the highly productive Synchrotron Radiation community a uniquely attractive multi user storage ring adding the soft X-ray picosecond dynamics at MHz repetition rate. In particular investigations on reversible dynamics and switching in molecular systems and materials are accessible in a non destructive way. The investigations with X-rays from BESSY-VSR are highly complementary and compatible to dynamic studies conducted by users with optical lasers at their home universities and laboratories. Technologically, the employed superconducting bunch compression cavities in BESSY-VSR are a

  8. SU-E-J-207: Effect of Pulse Sequence Parameters On Geometric Distortions Induced by a Titanium Brachytherapy Applicator

    International Nuclear Information System (INIS)

    Shea, S; Diak, A; Surucu, M; Harkenrider, M; Yacoub, J; Roeske, J; Small, W

    2015-01-01

    Purpose: To investigate the effect of readout bandwidth and voxel size on the appearance of distortion artifacts caused by a titanium brachytherapy applicator. Methods: An acrylic phantom was constructed to rigidly hold a MR conditional, titanium Fletcher-Suit-Delclos-style applicator set (Varian Medical Systems) for imaging on CT (Philips Brilliance) and 1.5T MRI (Siemens Magnetom Aera). Several variants of MRI parameters were tried for 2D T2-weighted turbo spin echo imaging in comparison against the standard clinical protocol with the criteria to keep relative SNR loss less than 20% and imaging time as short as possible. Two 3D sequences were also used for comparison with similar parameters. The applicator tandem was segmented on axial CT images (0.4×0.4×1.5mm 3 resolution) and the CT images were registered to the 3D MR images in Eclipse (Varian). The applicator volume was then overlaid on all MRI sets in 3D-Slicer and distances were measured from the tandem tip to the MRI artifact edge in right/left/superior and anterior/posterior/superior directions from coronal and sagittal 2D acquisitions, respectively, or 3D data reformats. Artifact regions were also manually contoured in coronal/sagittal orientations for area measurements. Results: As would be expected, reductions in voxel size and increases in readout bandwidth reduced artifact size (average max artifact length decreased by 0.95 mm and average max area decrease by 0.27 cm 2 ). Interestingly, bandwidth increases yielded reductions in area (0.19 cm 2 ) and in distance measurements (1 mm) even with voxel increases, as compared to a standard protocol. This could be useful when high performance protocols are not feasible due to long imaging times. Conclusion: We have characterized artifacts caused by cervical brachytherapy applicator across multiple sequence parameters at 1.5T. Future work will focus on finalizing an optimal protocol that balances artifact reduction with imaging time and then testing this new

  9. Initiating events and accidental sequences taken into account in the CAREM reactor design

    International Nuclear Information System (INIS)

    Kay, J.M.; Felizia, E.R.; Navarro, N.R.; Caruso, G.J.

    1990-01-01

    The advance made in the nuclear security evaluation of the CAREM reactor is presented. It was carried out using the Security Probabilistic Analysis (SPA). The latter takes into account the different phases of identification and solution of initiating events and the qualitative development of event trees. The method of identification of initiating events is the Master Logical Diagram (MLD), whose deductive basis makes it appropriate for a new design like the one described. The qualitative development of the event trees associated to the identified initiating events, allows identification of those accidental sequences which are to have the security systems in the reactor. (Author) [es

  10. Designing a Bioengine for Detection and Analysis of Base String on an Affected Sequence in High-Concentration Regions

    Directory of Open Access Journals (Sweden)

    Debnath Bhattacharyya

    2013-01-01

    Full Text Available We design an Algorithm for bioengine. As a program are enable optimal alignments searching between two sequences, the host sequence (normal plant as well as query sequence (virus. Searching for homologues has become a routine operation of biological sequences in 4 × 4 combination with different subsequence (word size. This program takes the advantage of the high degree of homology between such sequences to construct an alignment of the matching regions. There is a main aim which is to detect the overlapping reading frames. This program also enables to find out the highly infected colones selection highest matching region with minimum gap or mismatch zones and unique virus colones matches. This is a small, portable, interactive, front-end program intended to be used to find out the regions of matching between host sequence and query subsequences. All the operations are carried out in fraction of seconds, depending on the required task and on the sequence length.

  11. Designing a Bioengine for Detection and Analysis of Base String on an Affected Sequence in High-Concentration Regions

    Science.gov (United States)

    Mandal, Bijoy Kumar; Kim, Tai-hoon

    2013-01-01

    We design an Algorithm for bioengine. As a program are enable optimal alignments searching between two sequences, the host sequence (normal plant) as well as query sequence (virus). Searching for homologues has become a routine operation of biological sequences in 4 × 4 combination with different subsequence (word size). This program takes the advantage of the high degree of homology between such sequences to construct an alignment of the matching regions. There is a main aim which is to detect the overlapping reading frames. This program also enables to find out the highly infected colones selection highest matching region with minimum gap or mismatch zones and unique virus colones matches. This is a small, portable, interactive, front-end program intended to be used to find out the regions of matching between host sequence and query subsequences. All the operations are carried out in fraction of seconds, depending on the required task and on the sequence length. PMID:24000321

  12. Design Pattern Mining Using Distributed Learning Automata and DNA Sequence Alignment

    Science.gov (United States)

    Esmaeilpour, Mansour; Naderifar, Vahideh; Shukur, Zarina

    2014-01-01

    Context Over the last decade, design patterns have been used extensively to generate reusable solutions to frequently encountered problems in software engineering and object oriented programming. A design pattern is a repeatable software design solution that provides a template for solving various instances of a general problem. Objective This paper describes a new method for pattern mining, isolating design patterns and relationship between them; and a related tool, DLA-DNA for all implemented pattern and all projects used for evaluation. DLA-DNA achieves acceptable precision and recall instead of other evaluated tools based on distributed learning automata (DLA) and deoxyribonucleic acid (DNA) sequences alignment. Method The proposed method mines structural design patterns in the object oriented source code and extracts the strong and weak relationships between them, enabling analyzers and programmers to determine the dependency rate of each object, component, and other section of the code for parameter passing and modular programming. The proposed model can detect design patterns better that available other tools those are Pinot, PTIDEJ and DPJF; and the strengths of their relationships. Results The result demonstrate that whenever the source code is build standard and non-standard, based on the design patterns, then the result of the proposed method is near to DPJF and better that Pinot and PTIDEJ. The proposed model is tested on the several source codes and is compared with other related models and available tools those the results show the precision and recall of the proposed method, averagely 20% and 9.6% are more than Pinot, 27% and 31% are more than PTIDEJ and 3.3% and 2% are more than DPJF respectively. Conclusion The primary idea of the proposed method is organized in two following steps: the first step, elemental design patterns are identified, while at the second step, is composed to recognize actual design patterns. PMID:25243670

  13. Design pattern mining using distributed learning automata and DNA sequence alignment.

    Directory of Open Access Journals (Sweden)

    Mansour Esmaeilpour

    Full Text Available CONTEXT: Over the last decade, design patterns have been used extensively to generate reusable solutions to frequently encountered problems in software engineering and object oriented programming. A design pattern is a repeatable software design solution that provides a template for solving various instances of a general problem. OBJECTIVE: This paper describes a new method for pattern mining, isolating design patterns and relationship between them; and a related tool, DLA-DNA for all implemented pattern and all projects used for evaluation. DLA-DNA achieves acceptable precision and recall instead of other evaluated tools based on distributed learning automata (DLA and deoxyribonucleic acid (DNA sequences alignment. METHOD: The proposed method mines structural design patterns in the object oriented source code and extracts the strong and weak relationships between them, enabling analyzers and programmers to determine the dependency rate of each object, component, and other section of the code for parameter passing and modular programming. The proposed model can detect design patterns better that available other tools those are Pinot, PTIDEJ and DPJF; and the strengths of their relationships. RESULTS: The result demonstrate that whenever the source code is build standard and non-standard, based on the design patterns, then the result of the proposed method is near to DPJF and better that Pinot and PTIDEJ. The proposed model is tested on the several source codes and is compared with other related models and available tools those the results show the precision and recall of the proposed method, averagely 20% and 9.6% are more than Pinot, 27% and 31% are more than PTIDEJ and 3.3% and 2% are more than DPJF respectively. CONCLUSION: The primary idea of the proposed method is organized in two following steps: the first step, elemental design patterns are identified, while at the second step, is composed to recognize actual design patterns.

  14. Design pattern mining using distributed learning automata and DNA sequence alignment.

    Science.gov (United States)

    Esmaeilpour, Mansour; Naderifar, Vahideh; Shukur, Zarina

    2014-01-01

    Over the last decade, design patterns have been used extensively to generate reusable solutions to frequently encountered problems in software engineering and object oriented programming. A design pattern is a repeatable software design solution that provides a template for solving various instances of a general problem. This paper describes a new method for pattern mining, isolating design patterns and relationship between them; and a related tool, DLA-DNA for all implemented pattern and all projects used for evaluation. DLA-DNA achieves acceptable precision and recall instead of other evaluated tools based on distributed learning automata (DLA) and deoxyribonucleic acid (DNA) sequences alignment. The proposed method mines structural design patterns in the object oriented source code and extracts the strong and weak relationships between them, enabling analyzers and programmers to determine the dependency rate of each object, component, and other section of the code for parameter passing and modular programming. The proposed model can detect design patterns better that available other tools those are Pinot, PTIDEJ and DPJF; and the strengths of their relationships. The result demonstrate that whenever the source code is build standard and non-standard, based on the design patterns, then the result of the proposed method is near to DPJF and better that Pinot and PTIDEJ. The proposed model is tested on the several source codes and is compared with other related models and available tools those the results show the precision and recall of the proposed method, averagely 20% and 9.6% are more than Pinot, 27% and 31% are more than PTIDEJ and 3.3% and 2% are more than DPJF respectively. The primary idea of the proposed method is organized in two following steps: the first step, elemental design patterns are identified, while at the second step, is composed to recognize actual design patterns.

  15. Designing Neutralized Drift Compression for Focusing of Intense Ion Beam Pulses in a Background Plasma

    International Nuclear Information System (INIS)

    Kaganovich, I.D.; Davidson, R.C.; Dorf, M.; Startsev, E.A.; Barnard, J.J.; Friedman, A.; Lee, E.P.; Lidia, S.M.; Logan, B.G.; Roy, P.K.; Seidl, P.A.; Welch, D.R.; Sefkow, A.B.

    2009-01-01

    Neutralized drift compression offers an effective method for particle beam focusing and current amplification. In neutralized drift compression, a linear radial and longitudinal velocity drift is applied to a beam pulse, so that the beam pulse compresses as it drifts in the drift-compression section. The beam intensity can increase more than a factor of 100 in both the radial and longitudinal directions, resulting in more than 10,000 times increase in the beam number density during this process. The self-electric and self-magnetic fields can prevent tight ballistic focusing and have to be neutralized by supplying neutralizing electrons. This paper presents a survey of the present theoretical understanding of the drift compression process and plasma neutralization of intense particle beams. The optimal configuration of focusing and neutralizing elements is discussed in this paper.

  16. Design, Construction and Testing of a Pulsed High Energy Inductive Superconducting Energy Storage System

    Science.gov (United States)

    1975-09-01

    10,000 tim;es larger tnan the resistive voltaje and can be !-½vce evough to de;tr,)y electronic equip-ient. This task car. be accu)rplmshrd by...2.67 kH. FA 2483 231 E cNu 42 1 o Time 0.2 ms/cm Figure 128 Single pulse of current to 0.2 2 load delivered by helium switch. Firingj voltaj - 2,000 V

  17. Design of pulsed laser diode drive power for ZY3(02) laser altimeter

    Science.gov (United States)

    Feng, Wen; Li, Mingshan; Meng, Peibei; Yan, Fanjiang; Li, Xu; Wang, Chunhui

    2017-11-01

    Solid laser pumped by semiconductor laser has the large value in the area of space laser technology, because of the advantages of high efficiency, small volume and long life. As the indispensable component of laser, laser power is also very important. Combined with ZY3(02) laser altimeter project, a high voltage(0-300V), high current(0-80A), long pulse width(0-230us) and high precision temperature semiconductor laser power is developed. IGBT is applied in the driving circuit as the switch to provide a current pulse for LD. The heating or cooling capacity of TEC is controlled by PID compensation circuit quickly adjusts the duty cycle of the UC1637 PWM signal, to realize the high accuracy controlling of LD working temperature. The tests in the external ambient temperature of 5°C, 20°C, 30°C show that the LD current pulse is stable and the stability of LD working temperature up to +/-0.1°C around the set point temperature, which ensure the highly stable operation of DPL.

  18. Theory and design aspects of the 1 GeV proton compressor ring for pulsed beams of spallation neutrons and muons

    International Nuclear Information System (INIS)

    Rees, G.H.

    1988-05-01

    In the present paper, an outline design is presented for a 50 Hz, 1 GeV proton compressor ring of Japanese Hadron Project. The design aims are to provide two pulses of 1 GeV protons with an average current of 200 μA, one pulse with the time duration of 20 ns and the other of 100 - 200 ns. Very important aspects of magnet lattice, injection scheme, bunch compression process, beam instabilities are discussed. (author)

  19. Putative and unique gene sequence utilization for the design of species specific probes as modeled by Lactobacillus plantarum

    Science.gov (United States)

    The concept of utilizing putative and unique gene sequences for the design of species specific probes was tested. The abundance profile of assigned functions within the Lactobacillus plantarum genome was used for the identification of the putative and unique gene sequence, csh. The targeted gene (cs...

  20. The de Bono LAMS Sequence Series: Template Designs as Knowledge-Mobilising Strategy for 21st Century Higher Education

    Science.gov (United States)

    Dobozy, Eva

    2012-01-01

    In this paper, the five interlocking de Bono LAMS sequences are introduced as a new form of generic template designs. This transdisciplinary knowledge-mobilising strategy is based on Edward de Bono's attention-directing ideas and thinking skills, commonly known as the CoRT tools. The development of the de Bono LAMS sequence series is an important…

  1. Water-dielectric-breakdown relation for the design of large-area multimegavolt pulsed-power systems

    Directory of Open Access Journals (Sweden)

    W. A. Stygar

    2006-07-01

    Full Text Available We have developed an empirical electrical-breakdown relation that can be used to design large-area water-insulated pulsed-power systems. Such systems often form an integral part of multiterawatt pulsed-power accelerators, and may be incorporated in future petawatt-class machines. We find that complete dielectric failure is likely to occur in water between a significantly field-enhanced anode and a less-enhanced cathode when E_{p}τ_{eff}^{0.330±0.026}=0.135±0.009. In this expression E_{p}≡V_{p}/d is the peak value in time of the spatially averaged electric field between the anode and cathode (in MV/cm, V_{p} is the peak voltage across the electrodes, d is the distance between the anode and cathode, and τ_{eff} is the temporal width (in μs of the voltage pulse at 63% of peak. This relation is based on 25 measurements for which 1≤V_{p}≤4.10   MV, 1.25≤d≤22   cm, and 0.011≤τ_{eff}≤0.6   μs. The normalized standard deviation of the differences between these measurements and the associated predictions of the relation is 12%.

  2. Insights into the role of protein molecule size and structure on interfacial properties using designed sequences

    Science.gov (United States)

    Dwyer, Mirjana Dimitrijev; He, Lizhong; James, Michael; Nelson, Andrew; Middelberg, Anton P. J.

    2013-01-01

    Mixtures of a large, structured protein with a smaller, unstructured component are inherently complex and hard to characterize at interfaces, leading to difficulties in understanding their interfacial behaviours and, therefore, formulation optimization. Here, we investigated interfacial properties of such a mixed system. Simplicity was achieved using designed sequences in which chemical differences had been eliminated to isolate the effect of molecular size and structure, namely a short unstructured peptide (DAMP1) and its longer structured protein concatamer (DAMP4). Interfacial tension measurements suggested that the size and bulk structuring of the larger molecule led to much slower adsorption kinetics. Neutron reflectometry at equilibrium revealed that both molecules adsorbed as a monolayer to the air–water interface (indicating unfolding of DAMP4 to give a chain of four connected DAMP1 molecules), with a concentration ratio equal to that in the bulk. This suggests the overall free energy of adsorption is equal despite differences in size and bulk structure. At small interfacial extensional strains, only molecule packing influenced the stress response. At larger strains, the effect of size became apparent, with DAMP4 registering a higher stress response and interfacial elasticity. When both components were present at the interface, most stress-dissipating movement was achieved by DAMP1. This work thus provides insights into the role of proteins' molecular size and structure on their interfacial properties, and the designed sequences introduced here can serve as effective tools for interfacial studies of proteins and polymers. PMID:23303222

  3. Programmable pulse generator

    International Nuclear Information System (INIS)

    Xue Zhihua; Lou Binqiao; Duan Xiaohui

    2002-01-01

    The author introduces the design of programmable pulse generator that is based on a micro-controller and controlled by RS232 interface of personal computer. The whole system has good stability. The pulse generator can produce TTL pulse and analog pulse. The pulse frequency can be selected by EPLD. The voltage amplitude and pulse width of analog pulse can be adjusted by analog switches and digitally-controlled potentiometers. The software development tools of computer is National Instruments LabView5.1. The front panel of this virtual instrumentation is intuitive and easy-to-use. Parameters can be selected and changed conveniently by knob and slide

  4. New design of the pulsed electro-acoustic upper electrode for space charge measurements during electronic irradiation

    Energy Technology Data Exchange (ETDEWEB)

    Riffaud, J.; Griseri, V.; Berquez, L. [UPS, LAPLACE, Université de Toulouse, 118 Route de Narbonne, Toulouse F-31062, France and CNRS, LAPLACE, Toulouse F-31062 (France)

    2016-07-15

    The behaviour of space charges injected in irradiated dielectrics has been studied for many years for space industry applications. In our case, the pulsed electro-acoustic method is chosen in order to determine the spatial distribution of injected electrons. The feasibility of a ring-shaped electrode which will allow the measurements during irradiation is presented. In this paper, a computer simulation is made in order to determine the parameters to design the electrode and find its position above the sample. The obtained experimental results on polyethylene naphthalate samples realized during electronic irradiation and through relaxation under vacuum will be presented and discussed.

  5. Design of a New Acceleration System for High-Current Pulsed Proton Beams from an ECR Source

    Science.gov (United States)

    Cooper, Andrew L.; Pogrebnyak, Ivan; Surbrook, Jason T.; Kelly, Keegan J.; Carlin, Bret P.; Champagne, Arthur E.; Clegg, Thomas B.

    2014-03-01

    A primary objective for accelerators at TUNL's Laboratory for Experimental Nuclear Astrophysics (LENA) is to maximize target beam intensity to ensure a high rate of nuclear events during each experiment. Average proton target currents of several mA are needed from LENA's electron cyclotron resonance (ECR) ion source because nuclear cross sections decrease substantially at energies of interest tube structures; and provide better heat dissipation by using deionized water to provide the current drain needed to establish the accelerating tube's voltage gradient. Details of beam optical modeling calculations, proposed accelerating tube design, and initial beam pulsing tests will be described. Work supported in part by USDOE Office of HE and Nuclear Physics.

  6. Cartilage destruction in small joints by rheumatoid arthritis: assessment of fat-suppressed three-dimensional gradient-echo MR pulse sequences in vitro

    International Nuclear Information System (INIS)

    Uhl, M.; Allmann, K.H.; Hauer, M.P.; Langer, M.; Ihling, C.; Conca, W.

    1998-01-01

    Purpose. To assess the accuracy of different MR sequences for the detection of articular cartilage abnormalities in rheumatoid arthritis. Design and patients. Ten metacarpophalangeal joints and 10 metatarsophalangeal joints (specimens from arthritis patients undergoing ablative joint surgery) were examined with a fat-suppressed (FS) 3D FLASH, a FS 3D FISP, a FS 2D fast spin-echo T2-weighted, and a 2D FS spin-echo T1-weighted sequence. Each cartilage lesion and each cortical lesion was graded from 0 to 4 (modified Outerbridge staging system). Subsequently, the results of each sequence were compared with the macroscopic findings and statistically tested against each other. Results. The study shows that 3D gradient-echo sequences with fat suppression were best for imaging and grading of cartilage lesions in arthritis of the small joints of the hands and feet. Using 3D techniques, all grade 2, grade 3, and grade 4 lesions of cartilage or cortical bone were detected. Conclusion. FS 3D gradient-echo techniques were best for the detection and grading of hyaline cartilage and subchondral bone lesions in rheumatoid arthritis. MRI has a great potential as an objective method of evaluating cartilage damage and bone erosions in rheumatoid arthritis. (orig.)

  7. Cartilage destruction in small joints by rheumatoid arthritis: assessment of fat-suppressed three-dimensional gradient-echo MR pulse sequences in vitro

    Energy Technology Data Exchange (ETDEWEB)

    Uhl, M.; Allmann, K.H.; Hauer, M.P.; Langer, M. [Department of Diagnostic Radiology, University Hospital Freiburg (Germany); Ihling, C. [Department of Pathology, University Hospital Freiburg, Freiburg (Germany); Conca, W. [Department of Rheumatology, University Hospital Freiburg (Germany)

    1998-12-01

    Purpose. To assess the accuracy of different MR sequences for the detection of articular cartilage abnormalities in rheumatoid arthritis. Design and patients. Ten metacarpophalangeal joints and 10 metatarsophalangeal joints (specimens from arthritis patients undergoing ablative joint surgery) were examined with a fat-suppressed (FS) 3D FLASH, a FS 3D FISP, a FS 2D fast spin-echo T2-weighted, and a 2D FS spin-echo T1-weighted sequence. Each cartilage lesion and each cortical lesion was graded from 0 to 4 (modified Outerbridge staging system). Subsequently, the results of each sequence were compared with the macroscopic findings and statistically tested against each other. Results. The study shows that 3D gradient-echo sequences with fat suppression were best for imaging and grading of cartilage lesions in arthritis of the small joints of the hands and feet. Using 3D techniques, all grade 2, grade 3, and grade 4 lesions of cartilage or cortical bone were detected. Conclusion. FS 3D gradient-echo techniques were best for the detection and grading of hyaline cartilage and subchondral bone lesions in rheumatoid arthritis. MRI has a great potential as an objective method of evaluating cartilage damage and bone erosions in rheumatoid arthritis. (orig.) With 5 figs., 19 refs.

  8. The next nuclear power station generation: Beyond-design accident concepts, methods, and action sequence

    International Nuclear Information System (INIS)

    Asmolov, V.G.; Khakh, O.Ya.; Shashkov, M.G.

    1993-01-01

    The problem of beyond-design accidents at nuclear stations will not be solved unless a safety culture becomes a basic characteristic of all lines of activity. Only then can the danger of accidents as an objective feature of nuclear stations be eliminated by purposive skilled and responsible activities of those implementing safety. Nuclear-station safety is provided by the following interacting and complementary lines of activity: (1) the design and construction of nuclear stations by properly qualified design and building organizations; (2) monitoring and supervision of safety by special state bodies; (3) control of the station by the exploiting organization; and (4) scientific examination of safety within the above framework and by independent organizations. The distribution of the responsibilities, powers, and right in these lines should be defined by a law on atomic energy, but there is not such law in Russian. The beyond-design accident problem is a key one in nuclear station safety, as it clear from the serious experience with accidents and numerous probabilistic studies. There are four features of the state of this topic in Russia that are of major significance for managing accidents: the lack of an atomic energy law, the inadequacy of the technical standards, the lack of a verified program package for nuclear-station designs in order to calculate the beyond-design accidents and analyze risks, and a lack of approach by designers to such accidents on the basis of international recommendations. This paper gives a brief description of three-forming points in the scientific activity: the general concept of nuclear-station safety, methods of analyzing and providing accident management, and the sequence of actions developed by specialists at this institute in recent years

  9. Storage of magnetization as singlet order by optimal control designed pulses

    DEFF Research Database (Denmark)

    Laustsen, Christoffer; Bowen, Sean; Vinding, Mads Sloth

    2014-01-01

    The use of hyperpolarization to enhance the sensitivity of MRI has so far been limited by the decay of the polarization through T1 relaxation. Recently, methods have been proposed that extend the lifetime of the hyperpolarization by storing the spin order in slowly relaxing singlet states....... With this aim, optimal control theory was applied to create pulses that for near‐equivalent spins accomplish transfers in and out of the singlet state with maximum efficiency while ensuring robustness toward variations in the nuclear spin system Hamiltonian (chemical shift, J‐couplings, B1 and B magnetic field...

  10. Compression and radiation of high-power short rf pulses. II. A novel antenna array design with combined compressor/radiator elements

    KAUST Repository

    Sirenko, Kostyantyn

    2011-01-01

    The paper discusses the radiation of compressed high power short RF pulses using two different types of antennas: (i) A simple monopole antenna and (ii) a novel array design, where each of the elements is constructed by combining a compressor and a radiator. The studies on the monopole antenna demonstrate the possibility of a high power short RF pulse\\'s efficient radiation even using simple antennas. The studies on the novel array design demonstrate that a reduced size array with lower pulse distortion and power decay can be constructed by assembling the array from elements each of which integrates a compressor and a radiator. This design idea can be used with any type of antenna array; in this work it is applied to a phased array.

  11. Efficient theory of dipolar recoupling in solid-state nuclear magnetic resonance of rotating solids using Floquet-Magnus expansion: application on BABA and C7 radiofrequency pulse sequences.

    Science.gov (United States)

    Mananga, Eugene S; Reid, Alicia E; Charpentier, Thibault

    2012-02-01

    This article describes the use of an alternative expansion scheme called Floquet-Magnus expansion (FME) to study the dynamics of spin system in solid-state NMR. The main tool used to describe the effect of time-dependent interactions in NMR is the average Hamiltonian theory (AHT). However, some NMR experiments, such as sample rotation and pulse crafting, seem to be more conveniently described using the Floquet theory (FT). Here, we present the first report highlighting the basics of the Floquet-Magnus expansion (FME) scheme and hint at its application on recoupling sequences that excite more efficiently double-quantum coherences, namely BABA and C7 radiofrequency pulse sequences. The use of Λ(n)(t) functions available only in the FME scheme, allows the comparison of the efficiency of BABA and C7 sequences. Copyright © 2011 Elsevier Inc. All rights reserved.

  12. Pulsed-field gel electrophoresis and multi locus sequence typing for characterizing genotype variability of Yersinia ruckeri isolated from farmed fish in France.

    Science.gov (United States)

    Calvez, Ségolène; Fournel, Catherine; Douet, Diane-Gaëlle; Daniel, Patrick

    2015-06-23

    Yersinia ruckeri is a pathogen that has an impact on aquaculture worldwide. The disease caused by this bacterial species, yersiniosis or redmouth disease, generates substantial economic losses due to the associated mortality and veterinary costs. For predicting outbreaks and improving control strategies, it is important to characterize the population structure of the bacteria. The phenotypic and genetic homogeneities described previously indicate a clonal population structure as observed in other fish bacteria. In this study, the pulsed-field gel electrophoresis (PFGE) and multi locus sequence typing (MLST) methods were used to describe a population of isolates from outbreaks on French fish farms. For the PFGE analysis, two enzymes (NotI and AscI) were used separately and together. Results from combining the enzymes showed the great homogeneity of the outbreak population with a similarity > 80.0% but a high variability within the cluster (cut-off value = 80.0%) with a total of 43 pulsotypes described and an index of diversity = 0.93. The dominant pulsotypes described with NotI (PtN4 and PtN7) have already been described in other European countries (Finland, Germany, Denmark, Spain and Italy). The MLST approach showed two dominant sequence types (ST31 and ST36), an epidemic structure of the French Y. ruckeri population and a preferentially clonal evolution for rainbow trout isolates. Our results point to multiple types of selection pressure on the Y. ruckeri population attributable to geographical origin, ecological niche specialization and movements of farmed fish.

  13. Identification of important ''PIUS'' design considerations and accident sequences using qualitative plant assessment techniques

    International Nuclear Information System (INIS)

    Higgins, J.; Fullwood, R.; Kroeger, P.; Youngblood, R.

    1992-01-01

    The PIUS (Process Inherent Ultimate Safety) reactor is an advanced design nuclear power plant that uses passive safety features and basic physical processes to address safety concerns. Brookhaven National Laboratory (BNL) performed a detailed study of the PIUS design for the NRC using primarily qualitative engineering analysis techniques. Some quantitative methods were also employed. There are three key initial areas of analysis: FMECA, HAZOP, and deterministic analyses, which are described herein. Once these three analysis methods were completed, the important findings from each of the methods were assembled into thePIUS Interim Table (PIT). This table thus contains a first cut sort of the important design considerations and features of the PIUS reactor. The table also identifies some potential initiating events and systems used for mitigating these initiators. The next stage of the analysis was the construction of event trees for each of the identified initiators. The most significant sequences were then determined qualitatively, using, some quantitative input. Finally, overall insights on the PIUS design developed from the PIT and from the event tree analysis were developed and presented

  14. Gadolinium-enhanced MR imaging of the wrist in rheumatoid arthritis: value of fat suppression pulse sequences

    International Nuclear Information System (INIS)

    Nakahara, N.; Uetani, M.; Hayashi, K.; Kawahara, Y.; Matsumoto, T.; Oda, J.

    1996-01-01

    Objective. To determine the usefulness of fat-suppressed gadolinium (Gd)-enhanced MR imaging of the wrist in patients with rheumatoid arthritis (RA). Design and patients. Fat-suppressed Gd-enhanced T1-weighted spin-echo (SE) images were obtained and compared with other standard techniques in 38 wrists of 27 patients (22-77 years) with RA. Scoring based on the degree of synovial enhancement of each joint was developed and the total scores (J-score) were correlated with radiographic stage, C-reactive protein (CRP), erythrocyte sedimentation rate (ESR), and symptomatic change in the follow-up study. Results. Synovial proliferations showed marked enhancement in all the wrists. In addition, contrast enhancement in the bone marrow and tenosynovium was seen in 36 and eight wrists respectively. Fat-suppressed Gd-enhanced T1-weighted images demonstrated these abnormalities better than other techniques. The J-scores correlated well with values of CRP (P=0.0034), but not with radiographic stages and ESR. Conclusion. Fat-suppressed Gd-enhanced T1-weighted SE images can clearly demonstrate most of the essential lesions in RA including the proliferative synovium, bone erosion, bone marrow inflammatory change, and tenosynovitis. Scoring based on the extent of Gd-enhancement of synovium can be useful in the assessment of the inflammatory status. (orig.). With 8 figs

  15. Gadolinium-enhanced MR imaging of the wrist in rheumatoid arthritis: value of fat suppression pulse sequences

    Energy Technology Data Exchange (ETDEWEB)

    Nakahara, N. [Department of Radiology, Nagasaki University School of Medicine, Sakamoto 1-7-1, Nagasaki 852 (Japan); Uetani, M. [Department of Radiology, Nagasaki University School of Medicine, Sakamoto 1-7-1, Nagasaki 852 (Japan); Hayashi, K. [Department of Radiology, Nagasaki University School of Medicine, Sakamoto 1-7-1, Nagasaki 852 (Japan); Kawahara, Y. [Department of Radiology, Nagasaki University School of Medicine, Sakamoto 1-7-1, Nagasaki 852 (Japan); Matsumoto, T. [Department of Orthopedics, Nagasaki University School of Medicine, Nagasaki (Japan); Oda, J. [Department of Orthopedics, Nagasaki University School of Medicine, Nagasaki (Japan)

    1996-10-01

    Objective. To determine the usefulness of fat-suppressed gadolinium (Gd)-enhanced MR imaging of the wrist in patients with rheumatoid arthritis (RA). Design and patients. Fat-suppressed Gd-enhanced T1-weighted spin-echo (SE) images were obtained and compared with other standard techniques in 38 wrists of 27 patients (22-77 years) with RA. Scoring based on the degree of synovial enhancement of each joint was developed and the total scores (J-score) were correlated with radiographic stage, C-reactive protein (CRP), erythrocyte sedimentation rate (ESR), and symptomatic change in the follow-up study. Results. Synovial proliferations showed marked enhancement in all the wrists. In addition, contrast enhancement in the bone marrow and tenosynovium was seen in 36 and eight wrists respectively. Fat-suppressed Gd-enhanced T1-weighted images demonstrated these abnormalities better than other techniques. The J-scores correlated well with values of CRP (P=0.0034), but not with radiographic stages and ESR. Conclusion. Fat-suppressed Gd-enhanced T1-weighted SE images can clearly demonstrate most of the essential lesions in RA including the proliferative synovium, bone erosion, bone marrow inflammatory change, and tenosynovitis. Scoring based on the extent of Gd-enhancement of synovium can be useful in the assessment of the inflammatory status. (orig.). With 8 figs.

  16. Conceptual design of the neutral beamline for TPX long pulse operation

    International Nuclear Information System (INIS)

    Wright, K.E.; Dahlgren, F.; Fan, H.M.; Grisham, L.R.; Hammersand, F.G.; Kamperschroer, J.H.; Lontai, L.M.; Oldaker, M.E.; Rogoff, P.

    1993-01-01

    The Tokamak Physics Experiment (TPX) will require a minimum of 8.0 megawatts of Neutral Beam beating power to be injected into the plasma for pulse lengths up to one thousand (1000) seconds to meet the experimental objectives. The Neutral Beam Injection System (NBIS) for initial operation on TPX will consist of one neutral beamline (NBL) with three Ion sources. Provisions will be made for a total of three NBLs. The NBIS will provide S.S MW of 120 keV D 0 and 2.S MW of partial-energy D 0 at 60 keV and 40 keV. The system also provides for measuring the neutral beam power, limits excess cold gas from entering the torus, and provides independent power, control, and protection for each individual ion source and accelerating structure. The Neutral Beam/Torus Connecting Duct (NB/TCD) includes a vacuum valve, an electrical insulating break, alignment bellows, vacuum seals, internal energy absorbing protective elements, beam diagnostics and bakeout capability. The NBL support structure will support the NBL, which will weigh approximately 80 tons at the proper elevation and withstand a seismic event. The NBIS currently operational on the Tokamak Fusion Test Reactor (TFTR) at the Princeton Plasma Physics Laboratory (PPPL) is restricted to injection pulse lengths of two (2) seconds by the limited capability of various energy absorbers. This paper describes the modifications and improvements which will be implemented for the TFTR Neutral Beamlines and the NB/TCD to satisfy the TPX requirements

  17. Design and implementation of microcontroller-based automatic sequence counting and switching system

    Directory of Open Access Journals (Sweden)

    Joshua ABOLARINWA

    2015-05-01

    Full Text Available Technological advancement and its influence on human being have been on the increase in recent time. Major areas of such influence, include monitoring and control activities. In order to keep track of human movement in and out of a particular building, there is the need for an automatic counting system. Therefore, in this paper, we present the design and implementation of a microcontroller-based automatic sequence counting and switching system. This system was designed and developed to save cost, time, energy, and to achieve seamless control in the event of switching on or off of electrical appliances within a building. Top-down modular design approach was used in conjunction with the versatility of microcontroller. The system is able to monitor, sequentially count the number of entry and exit of people through an entrance, afterwards, automatically control any electrical device connected to it. From various tests and measurements obtained, there are comparative benefits derived from the deployment of this system in terms of simplicity and accuracy over similar system that is not microcontroller-based. Therefore, this system can be deployed at commercial quantity with wide range of applications in homes, offices and other public places.

  18. Design of a Highly Stable, High-Conversion-Efficiency, Optical Parametric Chirped-Pulse Amplification System with Good Beam Quality

    International Nuclear Information System (INIS)

    Guardalben, M.J.; Keegan, J.; Waxer, L.J.; Bagnoud, V.; Begishev, I.A.; Puth, J.; Zuegel, J.D.

    2003-01-01

    OAK B204 An optical parametric chirped-pulse amplifier (OPCPA) design that provides 40% pump-to-signal conversion efficiency and over-500-mJ signal energy at 1054 nm for front-end injection into a Nd:glass amplifier chain is presented. This OPCPA system is currently being built as the prototype front end for the OMEGA EP (extended performance) laser system at the University of Rochester's Laboratory for Laser Energetics. Using a three-dimensional spatial and temporal numerical model, several design considerations necessary to achieve high conversion efficiency, good output stability, and good beam quality are discussed. The dependence of OPCPA output on the pump beam's spatiotemporal shape and the relative size of seed and pump beams is described. This includes the effects of pump intensity modulation and pump-signal walk-off. The trade-off among efficiency, stability, and low output beam intensity modulation is discussed

  19. System for increasing laser pulse rate

    International Nuclear Information System (INIS)

    1980-01-01

    A technique of static elements is disclosed for combining a plurality of laser beams having time sequenced, pulsed radiation to achieve an augmented pulse rate. The technique may also be applied in a system for combining both time sequenced pulses and frequency distinct pulses for use in a system for isotope enrichment. (author)

  20. QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects.

    Science.gov (United States)

    Meglécz, Emese; Costedoat, Caroline; Dubut, Vincent; Gilles, André; Malausa, Thibaut; Pech, Nicolas; Martin, Jean-François

    2010-02-01

    QDD is an open access program providing a user-friendly tool for microsatellite detection and primer design from large sets of DNA sequences. The program is designed to deal with all steps of treatment of raw sequences obtained from pyrosequencing of enriched DNA libraries, but it is also applicable to data obtained through other sequencing methods, using FASTA files as input. The following tasks are completed by QDD: tag sorting, adapter/vector removal, elimination of redundant sequences, detection of possible genomic multicopies (duplicated loci or transposable elements), stringent selection of target microsatellites and customizable primer design. It can treat up to one million sequences of a few hundred base pairs in the tag-sorting step, and up to 50,000 sequences in a single input file for the steps involving estimation of sequence similarity. QDD is freely available under the GPL licence for Windows and Linux from the following web site: http://www.univ-provence.fr/gsite/Local/egee/dir/meglecz/QDD.html. Supplementary data are available at Bioinformatics online.

  1. Pulsed neutron generators based on the sealed chambers of plasma focus design with D and DT fillings

    International Nuclear Information System (INIS)

    Yurkov, D I; Dulatov, A K; Lemeshko, B D; Golikov, A V; Andreev, D A; Mikhailov, Yu V; Prokuratov, I A; Selifanov, A N

    2015-01-01

    Development of neutron generators using plasma focus (PF) chambers is being conducted in the All-Russia Scientific Research Institute of Automatics (VNIIA) during more than 25 years. PF is a source of soft and hard x-rays and neutrons 2.5 MeV (D) or 14 MeV (DT). Pulses of x-rays and neutrons have a duration of about several tens of nanoseconds, which defines the scope of such generators—the study of ultrafast processes. VNIIA has developed a series of pulse neutron generators covering the range of outputs 10 7 –10 12 n/pulse with resources on the order of 10 3 –10 4 switches, depending on purposes. Generators have weights in the range of 30–700 kg, which allows referring them to the class of transportable generators. Generators include sealed PF chambers, whose manufacture was mastered by VNIIA vacuum tube production plant. A number of optimized PF chambers, designed for use in generators with a certain yield of neutrons has been developed. The use of gas generator based on gas absorber of hydrogen isotopes, enabled to increase the self-life and resource of PF chambers. Currently, the PF chambers withstand up to 1000 switches and have the safety of not less than 5 years. Using a generator with a gas heater, significantly increased security of PF chambers, because deuterium-tritium mixture is released only during work, other times it is in a bound state in the working element of the gas generator. (paper)

  2. Molecular Design of Antifouling Polymer Brushes Using Sequence-Specific Peptoids.

    Science.gov (United States)

    Lau, King Hang Aaron; Sileika, Tadas S; Park, Sung Hyun; Sousa, Ana Maria Leal; Burch, Patrick; Szleifer, Igal; Messersmith, Phillip B

    2015-01-07

    Material systems that can be used to flexibly and precisely define the chemical nature and molecular arrangement of a surface would be invaluable for the control of complex biointerfacial interactions. For example, progress in antifouling polymer biointerfaces that prevent non-specific protein adsorption and cell attachment, which can significantly improve the performance of an array of biomedical and industrial applications, is hampered by a lack of chemical models to identify the molecular features conferring their properties. Poly(N-substituted glycine) "peptoids" are peptidomimetic polymers that can be conveniently synthesized with specific monomer sequences and chain lengths, and are presented as a versatile platform for investigating the molecular design of antifouling polymer brushes. Zwitterionic antifouling polymer brushes have captured significant recent attention, and a targeted library of zwitterionic peptoid brushes with a different charge densities, hydration, separations between charged groups, chain lengths, and grafted chain densities, is quantitatively evaluated for their antifouling properties through a range of protein adsorption and cell attachment assays. Specific zwitterionic brush designs were found to give rise to distinct but subtle differences in properties. The results also point to the dominant roles of the grafted chain density and chain length in determining the performance of antifouling polymer brushes.

  3. Neutronic design of pulse operation simulating device for in-pile functional test of fusion blanket by MCNP

    Energy Technology Data Exchange (ETDEWEB)

    Nagao, Yoshiharu; Nakamichi, Masaru; Kawamura, Hiroshi [Japan Atomic Energy Research Inst., Oarai, Ibaraki (Japan)

    2000-03-01

    The pulse operation of a fusion reactor can be simulated in a fission reactor by controlling the neutron flux entering a test section by using a rotating 'hollow cylinder with window' made of hafnium. The rotating cylinder is installed between the test section and the fixed outer neutron absorber cylinder and is also made of hafnium with an opening in the direction to the core center. For gathering engineering data for the tritium breeding blanket such as characteristics of temperature change, tritium release and recovery, etc., it is desirable that the ratio of minimum to maximum thermal neutron fluxes is greater than 1:10. Design calculations were performed for the test assembly which considered local neutronic effects and the mechanical constraints of the device. From the results of these calculations, the ratio of minimum to maximum thermal neutron flux under irradiation would be about 1:10 using a pulse operation simulating device which has a thickness of 6.5 mm and a 150deg window angle for the rotating hollow cylinder and 5.0 mm in thickness of fixed neutron absorber. (author)

  4. The Development of a Course Sequence in Real-Time Systems Design

    Science.gov (United States)

    1993-08-01

    This project deals with the development of a senior level course sequence in software intensive real - time systems . The sequence consists of a course...for an engineering industrial career in real - time systems development. The course sequence emphasizes practical standards, techniques, and tools for...system development. Few universities include real - time systems development in their undergraduate Computer Engineering or Computer Science curriculum

  5. Design of a pulsed angular selective electron gun for the KATRIN main spectrometer

    Energy Technology Data Exchange (ETDEWEB)

    Winzen, Daniel; Hannen, Volker; Ortjohann, Hans-Werner; Zacher, Michael; Weinheimer, Christian [Institut fuer Kernphysik, Westfaelische Wilhelms-Universitaet, Muenster (Germany); Collaboration: KATRIN-Collaboration

    2012-07-01

    The KATRIN (KArlsruhe TRItium Neutrino mass) experiment will study the tritium {beta}-spectrum near the endpoint of 18.6 keV, aiming to measure the mass of the electron antineutrino. Using an electrostatic retarding spectrometer (MAC-E-Filter), the projected sensitivity for m{sub ve} is 200 meV/c{sup 2} at 90% C.L. In order to map out the electric and magnetic fields in the main spectrometer, an angular selective electron gun is currently being developed. The e-gun uses an UV-Laser to produce electrons via the photo-electric effect from a copper substrate which are then accelerated electrostatically. It features a small energy spread of approx. 0.1 eV, a sharp emission angle and will be able to cover the whole magnetic flux tube of KATRIN. Using a pulsed laser it is also possible to investigate the time of flight (TOF) of electrons through the spectrometer, offering enhanced sensitivity to spectrometer properties far away from the analysing plane. By comparing information from transmission function measurements and TOF data with Monte Carlo simulations of the setup, one will be able to achieve a detailed understanding of the spectrometer properties.

  6. LDRD Report: Topological Design Optimization of Convolutes in Next Generation Pulsed Power Devices.

    Energy Technology Data Exchange (ETDEWEB)

    Cyr, Eric C. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); von Winckel, Gregory John [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Kouri, Drew Philip [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Gardiner, Thomas Anthony [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Ridzal, Denis [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Shadid, John N. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Miller, Sean [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2017-09-01

    This LDRD project was developed around the ambitious goal of applying PDE-constrained opti- mization approaches to design Z-machine components whose performance is governed by elec- tromagnetic and plasma models. This report documents the results of this LDRD project. Our differentiating approach was to use topology optimization methods developed for structural design and extend them for application to electromagnetic systems pertinent to the Z-machine. To achieve this objective a suite of optimization algorithms were implemented in the ROL library part of the Trilinos framework. These methods were applied to standalone demonstration problems and the Drekar multi-physics research application. Out of this exploration a new augmented Lagrangian approach to structural design problems was developed. We demonstrate that this approach has favorable mesh-independent performance. Both the final design and the algorithmic performance were independent of the size of the mesh. In addition, topology optimization formulations for the design of conducting networks were developed and demonstrated. Of note, this formulation was used to develop a design for the inner magnetically insulated transmission line on the Z-machine. The resulting electromagnetic device is compared with theoretically postulated designs.

  7. Combination of multilocus sequence typing and pulsed-field gel electrophoresis reveals an association of molecular clonality with the emergence of extensive-drug resistance (XDR) in Salmonella.

    Science.gov (United States)

    Cao, Yongzhong; Shen, Yongxiu; Cheng, Lingling; Zhang, Xiaorong; Wang, Chao; Wang, Yan; Zhou, Xiaohui; Chao, Guoxiang; Wu, Yantao

    2018-03-01

    Salmonellae is one of the most important foodborne pathogens and becomes resistant to multiple antibiotics, which represents a significant challenge to food industry and public health. However, a molecular signature that can be used to distinguish antimicrobial resistance profile, particularly multi-drug resistance or extensive-drug resistance (XDR). In the current study, 168 isolates from the chicken and pork production chains and ill chickens were characterized by serotyping, antimicrobial susceptibility test, multilocus sequence typing (MLST) and pulsed-field gel electrophoresis (PFGE). The results showed that these isolates belonged to 13 serotypes, 14 multilocus sequence types (STs), 94 PFGE genotypes, and 70 antimicrobial resistant profiles. S. Enteritidis, S. Indiana, and S. Derby were the predominant serotypes, corresponding to the ST11, ST17, and ST40 clones, respectively and the PFGE Cluster A, Cluster E, and Cluster D, respectively. Among the ST11-S. Enteritidis (Cluster A) and the ST40-S. Derby (Cluster D) clones, the majority of isolates were resistant to 4-8 antimicrobial agents, whereas in the ST17S. Indiana (Cluster E) clone, isolates showed extensive-drug resistance (XDR) to 9-16 antimicrobial agents. The bla TEM-1-like gene was prevalent in the ST11 and ST17 clones corresponding to high ampicillin resistance. The bla TEM-1-like , bla CTX-M , bla OXA-1-like , sul1, aaC4, aac(6')-1b, dfrA17, and floR gene complex was highly prevalent among isolates of ST17, corresponding to an XDR phenotype. These results demonstrated the association of the resistant phenotypes and genotypes with ST clone and PFGE cluster. Our results also indicated that the newly identified gene complex comprising bla TEM-1-like , bla CTX-M , bla OXA-1-like , sul1, aaC4, aac(6')-1b, dfrA17, and floR, was responsible for the emergence of the ST17S. Indiana XDR clone. ST17 could be potentially used as a molecular signature to distinguish S. Indiana XDR clone. Copyright © 2017

  8. Statistical guidance for experimental design and data analysis of mutation detection in rare monogenic mendelian diseases by exome sequencing.

    Directory of Open Access Journals (Sweden)

    Degui Zhi

    Full Text Available Recently, whole-genome sequencing, especially exome sequencing, has successfully led to the identification of causal mutations for rare monogenic Mendelian diseases. However, it is unclear whether this approach can be generalized and effectively applied to other Mendelian diseases with high locus heterogeneity. Moreover, the current exome sequencing approach has limitations such as false positive and false negative rates of mutation detection due to sequencing errors and other artifacts, but the impact of these limitations on experimental design has not been systematically analyzed. To address these questions, we present a statistical modeling framework to calculate the power, the probability of identifying truly disease-causing genes, under various inheritance models and experimental conditions, providing guidance for both proper experimental design and data analysis. Based on our model, we found that the exome sequencing approach is well-powered for mutation detection in recessive, but not dominant, Mendelian diseases with high locus heterogeneity. A disease gene responsible for as low as 5% of the disease population can be readily identified by sequencing just 200 unrelated patients. Based on these results, for identifying rare Mendelian disease genes, we propose that a viable approach is to combine, sequence, and analyze patients with the same disease together, leveraging the statistical framework presented in this work.

  9. [Orthogonal design method to optimize rehabilitation prescription of pulsed electric field at Jiaji (EX-B 2) points for spinal cord injury].

    Science.gov (United States)

    Zhang, Lifeng; Zhang, Hui; Wang, Lin; Liu, Yanyan; Sun, Xianyue; Li, Lingyan; Hou, Jing

    2015-01-01

    By using orthogonal design method to optimnize prescription of pulsed electric field at Jiaji (EX- B 2) points for spinal cord injury (SCI). Fifty six patients of SCI were selected, in which 36 cases were divided into orthogonal design trial and 20 cases were into clinical verification. With 36 patients who received orthogonal design trial, Frankel grading scale was used as observation index to screen optimal prescription of pulsed electric field. Pulse frequency (factor A) included low frequency (factor A(I), 10(2) Hz). moderate frequency (factor A(II), 10(4) Hz) and high frequency (factor A(III), 10(3) Hz); pulse amplitude (factor B) included 0-30 V (factor B ), 0-60 V (factor B(II)) and 0-90 V (factor B(III)); pulse width (factor C) included 0.1 ms (factor C(I)). 0.6 ms (factor C(II)) and 0.9 ms (factor C(III)); acupuncture time (factor D) included one month (DI), three months (D(II)) and five months (D(III)). Twenty patients were used for clinical efficacy observation and the effects of screened optimal pre scription of pulsed electric field at Jiaji (EX-B 2) points combined with regular rehabilitation training on spasm se- verity, score of sensory and motor functions, Barthel index and Frankel score were observed. (1) As results of orthogonal design trial, the optimal prescription was A(III) B(III), C(I), D(III), which were high frequency (10(3) Hz), 0-90 V of pulse amplitude, 0.4 ms of pulse width and 5 months of treatment time. (2) As results of 20 patient clinical verification, Ashworth score, tendon reflex and clonus were all significantly improved (Ppulsed electric field at Jiaji (EX-B 2) points for spinal cord injury is high frequency (10& Hz), 0-90 V of pulse amplitude, 0.4 ms of pulse width and 5 months of treatment time. The optimal prescription of pulsed electric field at Jiaji (EX-B 2) points combined with regular rehabilitation could obviously improve spasm severity, enhance senso- ry and motor functions, and ameliorate activity of daily life and

  10. Conceptual design of a novel instrument for producing intense pulses of 10 ps X-rays for ultra-fast fluorescence measurements

    Energy Technology Data Exchange (ETDEWEB)

    Gruber, G.J.

    1996-05-01

    A novel bench-top device for producing intense, fast pulses of x-rays has been designed with 10 ps fwhm (full-width at half-maximum) x-ray pulse width, 120 keV maximum energy, 100 kHz repetition rate, and 1 A peak current onto the x-ray anode. The device includes three sections: (1) an electron gun that generates 5 ns wide pulses of 120 keV electrons at 100 kHz; (2) solenoidal magnetic lenses and deflection plates that focus the electrons onto an aperture plate and sweep the pulsed beam past the aperture, respectively; and (3) a tungsten anode onto which the post-aperture electrons are focused, producing pulses of x-rays. At a sweeping rate of 10{sup 13} V/s, the electron pulses and resulting x-ray pulses are reduced to about 10 ps. The design process used EGUN (an electron optics and gun design program) electron trajectory simulations, including calculation of important space charge effects. When built, this instrument will be used to excite new, fast, bright scintillator samples in crystal or powdered form, allowing fluorescent lifetimes and spectra to be measured with a microchannel PMT. The very narrow 10 ps x-ray pulse width is necessary for accurate measurements of the risetimes of very fast scintillators (e.g., BaF{sub 2}). In addition, the large x-ray flux (1 A peak current) is advantageous when using a reflection grating monochromator to measure decay times at different wavelengths.

  11. Conceptual design of a novel instrument for producing intense pulses of 10 ps X-rays for ultra-fast fluorescence measurements

    International Nuclear Information System (INIS)

    Gruber, G.J.

    1996-05-01

    A novel bench-top device for producing intense, fast pulses of x-rays has been designed with 10 ps fwhm (full-width at half-maximum) x-ray pulse width, 120 keV maximum energy, 100 kHz repetition rate, and 1 A peak current onto the x-ray anode. The device includes three sections: (1) an electron gun that generates 5 ns wide pulses of 120 keV electrons at 100 kHz; (2) solenoidal magnetic lenses and deflection plates that focus the electrons onto an aperture plate and sweep the pulsed beam past the aperture, respectively; and (3) a tungsten anode onto which the post-aperture electrons are focused, producing pulses of x-rays. At a sweeping rate of 10 13 V/s, the electron pulses and resulting x-ray pulses are reduced to about 10 ps. The design process used EGUN (an electron optics and gun design program) electron trajectory simulations, including calculation of important space charge effects. When built, this instrument will be used to excite new, fast, bright scintillator samples in crystal or powdered form, allowing fluorescent lifetimes and spectra to be measured with a microchannel PMT. The very narrow 10 ps x-ray pulse width is necessary for accurate measurements of the risetimes of very fast scintillators (e.g., BaF 2 ). In addition, the large x-ray flux (1 A peak current) is advantageous when using a reflection grating monochromator to measure decay times at different wavelengths

  12. A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotide distribution.

    Science.gov (United States)

    Reinharz, Vladimir; Ponty, Yann; Waldispühl, Jérôme

    2013-07-01

    The design of RNA sequences folding into predefined secondary structures is a milestone for many synthetic biology and gene therapy studies. Most of the current software uses similar local search strategies (i.e. a random seed is progressively adapted to acquire the desired folding properties) and more importantly do not allow the user to control explicitly the nucleotide distribution such as the GC-content in their sequences. However, the latter is an important criterion for large-scale applications as it could presumably be used to design sequences with better transcription rates and/or structural plasticity. In this article, we introduce IncaRNAtion, a novel algorithm to design RNA sequences folding into target secondary structures with a predefined nucleotide distribution. IncaRNAtion uses a global sampling approach and weighted sampling techniques. We show that our approach is fast (i.e. running time comparable or better than local search methods), seedless (we remove the bias of the seed in local search heuristics) and successfully generates high-quality sequences (i.e. thermodynamically stable) for any GC-content. To complete this study, we develop a hybrid method combining our global sampling approach with local search strategies. Remarkably, our glocal methodology overcomes both local and global approaches for sampling sequences with a specific GC-content and target structure. IncaRNAtion is available at csb.cs.mcgill.ca/incarnation/. Supplementary data are available at Bioinformatics online.

  13. Design, fabricate, and test a 1.06μ repetitively pulsed laser. Final report

    International Nuclear Information System (INIS)

    Eggleston, J.M.; Crawford, E.A.

    1985-01-01

    The results of a program to develop the Thomson scattering diagnostic laser are described. Background material and technical justification for the design approach are given. Principal results of the developmental program were the construction of a rep rated slab glass amplifier, and the accumulation of the design knowledge necessary to build such amplifiers for maximum performance. Significant advances were made in reducing second order optical distortions

  14. EFFICIENCY OF LINEAR PULSE ELECTROMECHANICAL CONVERTERS DESIGNED TO CREATE IMPACT LOADS AND HIGH SPEEDS

    Directory of Open Access Journals (Sweden)

    V.F. Bolyukh

    2015-06-01

    Full Text Available Considered linear impulse electromechanical converters (LIEC are used to create a significant impact and high-acceleration actuators on a short active site. The most effective types of LIEC are induction-dynamic (IDC, electro-dynamic (EDC and electro-magnetic (EMC converters. In all these types of short-term excitement LIEC carried briefly of the inductor from a pulsed source. This occurs when the magnetic field of the inductor causes the electro-dynamic or electromagnetic forces, leading to a linear movement of the armature. However, the issue at evaluating the effects of IDC, EDC and EMC, for creating a shock simultaneously with high speed to the specified criteria in the presence of ferromagnetic core virtually unexplored. The paper presents the simulated computer-WIDE 2D model of LIEC of coaxial configuration with ferromagnetic core by using software package COMSOL Multiphysics 4.4, taking into account the related electro-magnetic, thermal, and magnetic fields. In addition a synthesis of high-performance IDC, EDC and EMC to ensure maximum impact and speed of the operating element, whereby the comparative analysis of the effectiveness of the IDC, EDC and EMC via an integral index, taking into account the maximum value and momentum of electro-dynamic or electromagnetic force acting on the armature, maximum and average speed armature, efficiency, mass and dimensions performance transducer stray field, the maximum current density in the inductor is carried out. On the basis of the eight selection policies set the most efficient types of power and speed LIEC. It is shown that any one of the strategies IDC selection is not the best. To ensure maximum impact force is the most effective EMC and to ensure the greatest speed – EDC.

  15. Fast and Sequence-Adaptive Whole-Brain Segmentation Using Parametric Bayesian Modeling

    DEFF Research Database (Denmark)

    Puonti, Oula; Iglesias, Juan Eugenio; Van Leemput, Koen

    2016-01-01

    the performance of a segmentation algorithm designed to meet these requirements, building upon generative parametric models previously used in tissue classification. The method is tested on four different datasets acquired with different scanners, field strengths and pulse sequences, demonstrating comparable...

  16. Engineering design of a direct-cycle steam-generating blanket for a long-pulse fusion reactor

    International Nuclear Information System (INIS)

    Cort, G.E.; Hagenson, R.L.; Teasdale, R.W.; Fox, W.E.; Soran, P.D.; Cullingford, H.S.; Bathke, C.G.; Krakowski, R.A.

    1979-01-01

    A comprehensive neutronics, thermohydraulic, and mechanical design of a tritium-breeding blanket for use by a conceptual long-pulse Reversed-Field Pinch Reactor (RFPR) is described. On the basis of constraints imposed by cost and the desire to use existing technology, a direct-cycle steam system and stainless-steel construction were used. For reasons of plasma stability, the RFPR blanket supports a 20-mm-thick copper first wall. Located behind the 1.5-m-radius first wall is a 0.50-m-thick stainless-steel blanket containing a granular bed of Li 2 O through which flows low-pressure helium (0.1 MPa) for tritium extraction. Water/steam tubes radially penetrate this packed bed. The large thermal capacity and low thermal diffusivity of the Li 2 O blanket are sufficient to maintain a nearly constant temperature during the approx. 25-s burn period

  17. An investigation of application of the golden ratio and Fibonacci sequence in fashion design and pattern making

    Science.gov (United States)

    Kazlacheva, Z. I.

    2017-10-01

    The Golden ratio and Fibonacci sequence are used as proportions in design as symbols of beauty and harmony. That symbolism is a result of the strong connections in their mathematical nature. The Golden section is a number, introduced with Greek letter φ, which is found by dividing a line into two parts as the longer part divided by the smaller part is equal as the whole length of longer and smaller parts divided by the longer part. Fibonacci sequence is a series of numbers where every number is equal to the two numbers before it. An investigation of application of proportions based on the Golden ratio and Fibonacci sequence in the fashion design and pattern making of ladies’ clothing is the main aim of the paper. Based on the study it may be concluded that in fashion design and pattern making the Golden ratio and Fibonacci sequence can be used in creation of beautiful and harmonic forms directly or with the help of geometrical figures as: In directly use the Golden and Fibonacci numbers proportions can be in one and the same or different directions. In the application with the help of geometrical shapes the Golden and Fibonacci figures combine proportioning and form creation. The Golden and Fibonacci shapes can be used directly as forms or as frames of forms creation of elements and pieces. Its application can be in different directions and location according the bodice. The Golden section and Fibonacci sequence can combine proportions with other principles of design as symmetry, rhythm, etc.

  18. DEVELOPING THE PHYSICS DESIGN FOR NDCX-II, A UNIQUE PULSE-COMPRESSING ION ACCELERATOR

    International Nuclear Information System (INIS)

    Friedman, A.; Barnard, J.J.; Cohen, R.H.; Grote, D.P.; Lund, S.M.; Sharp, W.M.; Faltens, A.; Henestroza, E.; Jung, J.-Y.; Kwan, J.W.; Lee, E.P.; Leitner, M.A.; Logan, B.G.; Vay, J.-L.; Waldron, W.L.; Davidson, R.C.; Dorf, M.; Gilson, E.P.; Kaganovich, I.

    2009-01-01

    The Heavy Ion Fusion Science Virtual National Laboratory (a collaboration of LBNL, LLNL, and PPPL) is using intense ion beams to heat thin foils to the 'warm dense matter' regime at ∼ + ions to ∼1 ns while accelerating it to 3-4 MeV over ∼15 m. Strong space charge forces are incorporated into the machine design at a fundamental level. We are using analysis, an interactive 1D PIC code (ASP) with optimizing capabilities and centroid tracking, and multi-dimensional Warpcode PIC simulations, to develop the NDCX-II accelerator. This paper describes the computational models employed, and the resulting physics design for the accelerator.

  19. Target station design for a 1 MW pulsed spallation neutron source

    International Nuclear Information System (INIS)

    Russell, G.J.; Baker, G.D.; Brewton, R.J.

    1993-01-01

    Target stations are vital components of the 1 MW, next generation spallation neutron source proposed for LANSCE. By and large, target stations design determines the overall performance of the facility. Many traditional concepts will probably have to be rethought, and many new concepts will have to be put forward to meet the 1 MW challenge. This article gives a brief overview of the proposed neutron spallation source from the target station viewpoint, as well as the general philosophy adopted for the design of the LANSCE-II target stations. Some of the saliant concepts and features envisioned for LANSCE-II are briefly described

  20. Spreading Sequence Design for Multiple Cell Synchronous DS-CDMA Systems under Total Weighted Squared Correlation Criterion

    Directory of Open Access Journals (Sweden)

    Cotae Paul

    2004-01-01

    Full Text Available An algorithm for designing spreading sequences for an overloaded multicellular synchronous DS-CDMA system on uplink is introduced. The criterion used to measure the optimality of the design is the total weighted square correlation (TWSC assuming the channel state information known perfectly at both transmitter and receiver. By using this algorithm it is possible to obtain orthogonal generalized WBE sequences sets for any processing gain. The bandwidth of initial generalized WBE signals of each cell is preserved in the extended signal space associated to multicellular system. Mathematical formalism is illustrated by selected numerical examples.

  1. Antenna Parts and Waveguide Transmission Line of Short Pulse Radar System Design

    Directory of Open Access Journals (Sweden)

    M. E. Golubcov

    2014-01-01

    Full Text Available The main point of this research was работы являлось to create a stand to explore the application of short pulse radio signals in radar. The stand consists of antenna and waveguide elements. Each element out to guarantee operation in X-band with 10 percent working bank and 5 percent instantaneous bandwidth and the power output gotta be 1.5 kW. The form of the antenna beam patten need to be similar to cosecant pattern Side-lobe level need to be less than -25 dB. Background level got to be at least -30 dB. Wave friction, which is radiated from the antenna aperture, got to simultaneous formed in a space.As the most easily realizing variant of such antenna cutting parabolic mirror antenna with offset irradiator was chosen. The irradiator phase centre is shifted from the focal point of the paraboloid to form a cosecant pattern. Method of physical optics is used for the analysis of antennas. Calculating pattern of horn irradiator and mirror antenna which were met the requirements was received. The construction choice was limited by the preproduction possibilities, mass and dimensions. Mirror antenna consists of skeleton framing with mirroring elements which are fixing on it. Mirroring plane is multiplex and consists off rectangular planes made by hydroforming method. Antenna was tested and adjusted at the antenna darkroom after fabricating. The results were meted requirements.Besides the mirror antenna and the horn antenna waveguide elements, waveguide bends and rotating joints were calculated, manufactured and researched. All calculations included the manufacturers tolerances, technological corner R etc. As the construction base of rotating joint coaxial waveguide was chosen. The decision on the one hand: let keep the axial symmetry of excited wave at rotating part of the waveguide, on the other hand there’s no necessary to apply resonant rings, which are plug into dielectric beads for the transition from rotating ring part to

  2. Design and optimisation of a pulsed CO2 laser for laser ultrasonic applications

    CSIR Research Space (South Africa)

    Forbes, A

    2006-07-01

    Full Text Available at the material surface is detected and converted into a defect map across the aircraft. The design and optimization of a laser system for this application, together with the basic science involved, is reviewed in this paper. This includes the optimization...

  3. Radio-frequency electrical design of the WEST long pulse and load-resilient ICRH launchers

    Energy Technology Data Exchange (ETDEWEB)

    Helou, Walid, E-mail: walid.helou@cea.fr [CEA, IRFM, F-13108 St-Paul-Lez-Durance (France); Colas, Laurent; Hillairet, Julien [CEA, IRFM, F-13108 St-Paul-Lez-Durance (France); Milanesio, Daniele [Department of Electronics, Politecnico di Torino, Torino (Italy); Mollard, Patrick [CEA, IRFM, F-13108 St-Paul-Lez-Durance (France); Argouarch, Arnaud [CEA DAM/DIF/DP2I, Bruyère le Chatel (France); Berger-By, Gilles; Bernard, Jean-Michel [CEA, IRFM, F-13108 St-Paul-Lez-Durance (France); Chen, Zhaoxi [Institute of Plasma Physics, Chinese Academy of Sciences, Hefei 230031 (China); Delaplanche, Jean-Marc [CEA, IRFM, F-13108 St-Paul-Lez-Durance (France); Dumortier, Pierre; Durodié, Frédéric [Laboratoire de physique des plasmas de l’ERM, Laboratorium voor plasmafysica van de KMS – (LPP-ERM/KMS), Ecole royale militaire–Koninklijke militaire school, BE-1000 Brussels (Belgium); Ekedahl, Annika; Fedorczak, Nicolas; Ferlay, Fabien; Goniche, Marc [CEA, IRFM, F-13108 St-Paul-Lez-Durance (France); Jacquot, Jonathan [Max-Planck Institut für Plasmaphysik, Boltzmannstraße 2, 85748 Garching (Germany); Joffrin, Emmanuel; Litaudon, Xavier; Lombard, Gilles [CEA, IRFM, F-13108 St-Paul-Lez-Durance (France); and others

    2015-10-15

    Highlights: • Three new ion cyclotron resonance heating launchers designed for WEST. • Operation at 3 MW/launcher for 30 s and 1 MW/launcher for 1000 s on H-mode plasmas. • Unique combination of continuous-wave operation at high power and load tolerance. • International team led by the CEA/IRFM. • RF design performed using electromagnetic solvers and electric circuit calculations. - Abstract: Three new ion cyclotron resonance heating (ICRH) launchers have been designed for the WEST project (W-Tungsten Environment in Steady-state Tokamak) in order to operate at 3 MW/launcher for 30 s and 1 MW/launcher for 1000 s on H-mode plasmas. These new launchers will be to date the first ICRH launchers to offer the unique combination of continuous-wave (CW) operation at high power and load tolerance capabilities for coupling on H-mode edge. The radio-frequency (RF) design optimization process has been carried out using full-wave electromagnetic solvers combined with electric circuit calculations. Cavity modes occurring between the launchers structures and the vacuum vessel ports have been evaluated and cleared out.

  4. Design of a high pulse repitition frequency carbon dioxide laser for processing high damage threshold materials

    Science.gov (United States)

    Chatwin, Christopher R.; McDonald, Donald W.; Scott, Brian F.

    1989-07-01

    The absence of an applications led design philosophy has compromised both the development of laser source technology and its effective implementation into manufacturing technology in particular. For example, CO2 lasers are still incapable of processing classes of refractory and non-ferrous metals. Whilst the scope of this paper is restricted to high power CO2 lasers; the design methodology reported herein is applicable to source technology in general, which when exploited, will effect an expansion of applications. The CO2 laser operational envelope should not only be expanded to incorporate high damage threshold materials but also offer a greater degree of controllability. By a combination of modelling and experimentation the requisite beam characteristics, at the workpiece, were determined then utilised to design the Laser Manufacturing System. The design of sub-system elements was achieved by a combination of experimentation and simulation which benefited from a comprehensive set of software tools. By linking these tools the physical processes in the laser - electron processes in the plasma, the history of photons in the resonator, etc. - can be related, in a detailed model, to the heating mechanisms in the workpiece.

  5. Design and optimisation of a pulsed CO2 laser for laser ultrasonics

    CSIR Research Space (South Africa)

    Forbes, A

    2006-02-01

    Full Text Available , resulting in a response at the material surface. This is detected and converted into a defect map across the aircraft. In this paper the authors consider the design and optimisation of a laser system for this application, and cover the basic science...

  6. Preliminary design of the cooling system for a gas-cooled, high-fluence fast pulsed reactor (HFFPR)

    International Nuclear Information System (INIS)

    Monteith, H.C.

    1978-10-01

    The High-Fluence Fast Pulsed Reactor (HFFPR) is a research reactor concept currently being evaluated as a source for weapon effects experimentation and advanced reactor safety experiments. One of the designs under consideration is a gas-cooled design for testing large-scale weapon hardware or large bundles of full-length, fast reactor fuel pins. This report describes a conceptual cooling system design for such a reactor. The primary coolant would be helium and the secondary coolant would be water. The size of the helium-to-water heat exchanger and the water-to-water heat exchanger will be on the order of 0.9 metre (3 feet) in diameter and 3 metres (10 feet) in length. Analysis indicates that the entire cooling system will easily fit into the existing Sandia Engineering Reactor Facility (SERF) building. The alloy Incoloy 800H appears to be the best candidate for the tube material in the helium-to-water heat exchanger. Type 316 stainless steel has been recommended for the shell of this heat exchanger. Estimates place the cost of the helium-to-water heat exchanger at approximately $100,000, the water-to-water heat exchanger at approximately $25,000, and the helium pump at approximately $450,000. The overall cost of the cooling system will approach $2 million

  7. Optimal protein library design using recombination or point mutations based on sequence-based scoring functions.

    Science.gov (United States)

    Pantazes, Robert J; Saraf, Manish C; Maranas, Costas D

    2007-08-01

    In this paper, we introduce and test two new sequence-based protein scoring systems (i.e. S1, S2) for assessing the likelihood that a given protein hybrid will be functional. By binning together amino acids with similar properties (i.e. volume, hydrophobicity and charge) the scoring systems S1 and S2 allow for the quantification of the severity of mismatched interactions in the hybrids. The S2 scoring system is found to be able to significantly functionally enrich a cytochrome P450 library over other scoring methods. Given this scoring base, we subsequently constructed two separate optimization formulations (i.e. OPTCOMB and OPTOLIGO) for optimally designing protein combinatorial libraries involving recombination or mutations, respectively. Notably, two separate versions of OPTCOMB are generated (i.e. model M1, M2) with the latter allowing for position-dependent parental fragment skipping. Computational benchmarking results demonstrate the efficacy of models OPTCOMB and OPTOLIGO to generate high scoring libraries of a prespecified size.

  8. A new design of pulsed laser diode driver system for multistate quantum key distribution

    Science.gov (United States)

    Abdullah, M. S.; Jamaludin, M. Z.; Witjaksono, G.; Mokhtar, M. H. H.

    2011-07-01

    In this paper, we describe a new design of laser diode driver system based on MOSFET current mirror and digital signal controller (DSC). The system is designed to emit stream pairs of photons from three semiconductor laser diodes. The DSC is able to switch between the three laser diodes at constant rate. The duty cycle is maintained at 1% in order to reduce its thermal effect and thus prolong the laser diodes' life cycles. The MOSFET current mirror circuits are capable of delivering constant modulation current with peak current up to 58 mA to each laser diode. This laser driver system will allow the generating biphotons automatically with qubit rate around 8-13% for μ less than or equal to 1, thus making it practical for six-states quantum key distribution implementation.

  9. Transmitter and Translating Receiver Design For 64-ary Pulse Position Modulation (PPM)

    Energy Technology Data Exchange (ETDEWEB)

    Mendez, A J; Hernandez, V J; Gagliardi, R M; Bennett, C V

    2010-01-20

    This paper explores the architecture and design of an optically-implemented 64-ary PPM transmitter and direct-translating receiver that effectively translates incoming electrically-generated bit streams into optical PPM symbols (and vice-versa) at > 1 Gb/s data rates. The PPM transmitter is a cascade of optical switches operating at the frame rate. A corresponding receiver design is more difficult to architect and implement, since increasing data rates lead to correspondingly shorter decision times (slot times and frame times). We describe a solution in the form of a time-to-space mapping arrayed receiver that performs a translating algorithm represented as a code map. The technique for generating the code map is described, and the implementation of the receiver as a planar lightwave circuit is given. The techniques for implementing the transmitter and receiver can be generalized for any case of M-ary PPM.

  10. Use of the LUS in sequence allele designations to facilitate probabilistic genotyping of NGS-based STR typing results.

    Science.gov (United States)

    Just, Rebecca S; Irwin, Jodi A

    2018-05-01

    Some of the expected advantages of next generation sequencing (NGS) for short tandem repeat (STR) typing include enhanced mixture detection and genotype resolution via sequence variation among non-homologous alleles of the same length. However, at the same time that NGS methods for forensic DNA typing have advanced in recent years, many caseworking laboratories have implemented or are transitioning to probabilistic genotyping to assist the interpretation of complex autosomal STR typing results. Current probabilistic software programs are designed for length-based data, and were not intended to accommodate sequence strings as the product input. Yet to leverage the benefits of NGS for enhanced genotyping and mixture deconvolution, the sequence variation among same-length products must be utilized in some form. Here, we propose use of the longest uninterrupted stretch (LUS) in allele designations as a simple method to represent sequence variation within the STR repeat regions and facilitate - in the nearterm - probabilistic interpretation of NGS-based typing results. An examination of published population data indicated that a reference LUS region is straightforward to define for most autosomal STR loci, and that using repeat unit plus LUS length as the allele designator can represent greater than 80% of the alleles detected by sequencing. A proof of concept study performed using a freely available probabilistic software demonstrated that the LUS length can be used in allele designations when a program does not require alleles to be integers, and that utilizing sequence information improves interpretation of both single-source and mixed contributor STR typing results as compared to using repeat unit information alone. The LUS concept for allele designation maintains the repeat-based allele nomenclature that will permit backward compatibility to extant STR databases, and the LUS lengths themselves will be concordant regardless of the NGS assay or analysis tools

  11. Pulse Width Modulator Controller Design for a Brushless DC Motor Position Servo.

    Science.gov (United States)

    1987-06-01

    REQC1,REQC2, lAB, ZEC , ICA, 4. + PVAO, Fy5, PVCO,NODE,TRIG1,TRIG2,TRIG3 ,TRIG4, + TRIG5,TRIGS,RA,PLUGVAIMD,VBIND,VCIND) c call TCONST(ICQl, .75-SWl...DC Motors, Master’s Thesis, Naval Postgraduate School, Monterey, Ca., September 1984. 2. MacMillan, Peter N., A CSMP Commutation Model for .’. Design

  12. ICRPfinder: a fast pattern design algorithm for coding sequences and its application in finding potential restriction enzyme recognition sites

    Directory of Open Access Journals (Sweden)

    Stafford Phillip

    2009-09-01

    Full Text Available Abstract Background Restriction enzymes can produce easily definable segments from DNA sequences by using a variety of cut patterns. There are, however, no software tools that can aid in gene building -- that is, modifying wild-type DNA sequences to express the same wild-type amino acid sequences but with enhanced codons, specific cut sites, unique post-translational modifications, and other engineered-in components for recombinant applications. A fast DNA pattern design algorithm, ICRPfinder, is provided in this paper and applied to find or create potential recognition sites in target coding sequences. Results ICRPfinder is applied to find or create restriction enzyme recognition sites by introducing silent mutations. The algorithm is shown capable of mapping existing cut-sites but importantly it also can generate specified new unique cut-sites within a specified region that are guaranteed not to be present elsewhere in the DNA sequence. Conclusion ICRPfinder is a powerful tool for finding or creating specific DNA patterns in a given target coding sequence. ICRPfinder finds or creates patterns, which can include restriction enzyme recognition sites, without changing the translated protein sequence. ICRPfinder is a browser-based JavaScript application and it can run on any platform, in on-line or off-line mode.

  13. Target designs for the Brookhaven National Laboratory 5-MW pulsed spallation neutron source

    International Nuclear Information System (INIS)

    Ludewig, H.; Todosow, M.; Powell, J.R.

    1996-01-01

    A feasibility study of a compact high power density target for a spallation neutron source was under-taken. The target arrangement consists primarily of heavy metal, with appropriate cooling passages. A high intensity proton beam of intermediate energy is directed at the target, where it interacts with the heavy metal nuclei. The subsequent spallation reactions produce several neutrons per proton resulting in an intense neutron source. The proton beam is assumed to havean energy of 5 MW, and to be cyclic with a repetition rate of 10Hz and 50Hz. The study was divided into two broad sections. First, an analysis of preliminary target designs was undertaken to ensure the overall feasibility of the concepts involved in the design and eventual construction of such a high power density target. Second, two proposed target designs, based on the first set of analyses, are investigated in more detail. Special care is taken to ensure that the neutron fluxes in the moderator are at the desired level no material compatibility problems exist,and the target is able to operate in a reliable and safe manner. Several target materials, coolant types, and target arrangements are investigated in the first section. The second section concentrates on a single target material and geometric arrangement. However, several structural material choices continue to be investigated with the aim of minimizing the effects of structural heating, and associated thermally induced stresses. In the final section the conclusions of this preliminary study are summarized

  14. Conceptual design of a novel instrument for producing intense pulses of 10 ps X-rays for ultra-fast fluorescence measurements

    International Nuclear Information System (INIS)

    Gruber, G.J.; Derenzo, S.E.

    1996-01-01

    A novel bench-top device for producing intense, fast pulses of x-rays has been designed with 10 ps fwhm (full-width at half-maximum) x-ray pulse width, 120 keV maximum energy, 100 kHz repetition rate, and 1 A peak current onto the x-ray anode. The device includes three sections: (1) an electron gun that generates 5 ns wide pulses of 120 keV electrons at 100 kHz; (2) solenoidal magnetic lenses and deflection plates that focus the electrons onto an aperture plate and sweep the pulsed beam past the aperture, respectively; and (3) a tungsten anode onto which the post-aperture electrons are focused, producing pulses of x-rays. Using solenoidal magnetic lenses with a cur-rent density of 150 A·turns/cm 2 to focus the electron beam, a deflection plate dV/dt of 10 13 V/s is needed to achieve electron pulse widths of about 10 ps. The design process used EGUN (an electron optics and gun design program) electron trajectory simulations, including calculation of important space charge effects. When built, this instrument will be used to excite scintillator samples in crystal or powdered form, allowing fluorescent lifetimes and spectra to be measured with a microchannel PMT. The very narrow 10 ps x-ray pulse width is necessary for accurate measurements of the risetimes of very fast scintillators, (e.g., BaF 2 ). In addition, the large x-ray flux (1 A peak current) is advantageous when using a reflection grating monochromator to measure decay times at different wavelengths

  15. Distribution of Campylobacter jejuni isolates from turkey farms and different stages at slaughter using pulsed-field gel electrophoresis and flaA-short variable region sequencing.

    Science.gov (United States)

    Perko-Mäkelä, P; Alter, T; Isohanni, P; Zimmermann, S; Lyhs, U

    2011-09-01

    The aim of this study was to assess the diversity of thermotolerant Campylobacter spp. isolated from turkey flocks at six rearing farms 1-2 weeks prior to slaughter (360 faecal swab samples) and from 11 different stages at the slaughterhouse (636 caecal, environmental, neck skin and meat samples). A total of 121 Campylobacter isolates were identified to species level using a multiplex PCR assay and were typed by pulsed-field gel electrophoresis (PFGE) and flaA-short variable region (SVR) sequencing. All Campylobacter isolates were identified as Campylobacter jejuni. PFGE analysis with KpnI restriction enzyme resulted in 11 PFGE types (I-XI) and flaA SVR typing yielded in nine flaA-SVR alleles. The Campylobacter-positive turkey flocks A, C and E were colonized by a limited number of Campylobacter clones at the farm and slaughter. The present study confirms the traceability of flock-specific strains (PFGE types I, V and IX; flaA types 21, 36 and 161) from the farm along the entire processing line to meat cuts. It seems that stress factors such as high temperature of the defeathering water (54-56 °C), drying of the carcass skin during air chilling (24 h at 2 °C), and oxygen in the air could not eliminate Campylobacter completely. Campylobacter-negative flocks became contaminated during processing by the same subtypes of Campylobacter introduced into the slaughter house by preceeding positive flocks even if they were slaughtered on subsequent days. Proper and efficient cleaning and disinfection of slaughter and processing premises are needed to avoid cross-contamination, especially in countries with a low prevalence of Campylobacter spp. The majority of flaA SVR alleles displayed a distinct association with a specific PFGE type. However, a linear relationship for all strains among both typing methods could not be established. To specify genetic relatedness of strains, a combination of different genotyping methods, is needed. © 2011 Blackwell Verlag GmbH.

  16. Design and optimization of a modular setup for measurements of three-dimensional spin polarization with ultrafast pulsed sources.

    Science.gov (United States)

    Pincelli, T; Petrov, V N; Brajnik, G; Ciprian, R; Lollobrigida, V; Torelli, P; Krizmancic, D; Salvador, F; De Luisa, A; Sergo, R; Gubertini, A; Cautero, G; Carrato, S; Rossi, G; Panaccione, G

    2016-03-01

    ULTRASPIN is an apparatus devoted to the measurement of the spin polarization (SP) of electrons ejected from solid surfaces in a UHV environment. It is designed to exploit ultrafast light sources (free electron laser or laser high harmonic generation) and to perform (photo)electron spin analysis by an arrangement of Mott scattering polarimeters that measure the full SP vector. The system consists of two interconnected UHV vessels: one for surface science sample cleaning treatments, e-beam deposition of ultrathin films, and low energy electron diffraction/AES characterization. The sample environment in the polarimeter allows for cryogenic cooling and in-operando application of electric and magnetic fields. The photoelectrons are collected by an electrostatic accelerator and transport lens that form a periaxial beam that is subsequently directed by a Y-shaped electrostatic deflector to either one of the two orthogonal Mott polarimeters. The apparatus has been designed to operate in the extreme conditions of ultraintense single-X-ray pulses as originated by free electron lasers (up to 1 kHz), but it allows also for the single electron counting mode suitable when using statistical sources such as synchrotron radiation, cw-laser, or e-gun beams (up to 150 kcps).

  17. Design and optimization of a modular setup for measurements of three-dimensional spin polarization with ultrafast pulsed sources

    International Nuclear Information System (INIS)

    Pincelli, T.; Rossi, G.; Petrov, V. N.; Brajnik, G.; Carrato, S.; Ciprian, R.; Torelli, P.; Krizmancic, D.; Salvador, F.; De Luisa, A.; Panaccione, G.; Lollobrigida, V.; Sergo, R.; Gubertini, A.; Cautero, G.

    2016-01-01

    ULTRASPIN is an apparatus devoted to the measurement of the spin polarization (SP) of electrons ejected from solid surfaces in a UHV environment. It is designed to exploit ultrafast light sources (free electron laser or laser high harmonic generation) and to perform (photo)electron spin analysis by an arrangement of Mott scattering polarimeters that measure the full SP vector. The system consists of two interconnected UHV vessels: one for surface science sample cleaning treatments, e-beam deposition of ultrathin films, and low energy electron diffraction/AES characterization. The sample environment in the polarimeter allows for cryogenic cooling and in-operando application of electric and magnetic fields. The photoelectrons are collected by an electrostatic accelerator and transport lens that form a periaxial beam that is subsequently directed by a Y-shaped electrostatic deflector to either one of the two orthogonal Mott polarimeters. The apparatus has been designed to operate in the extreme conditions of ultraintense single-X-ray pulses as originated by free electron lasers (up to 1 kHz), but it allows also for the single electron counting mode suitable when using statistical sources such as synchrotron radiation, cw-laser, or e-gun beams (up to 150 kcps).

  18. Design and optimization of a modular setup for measurements of three-dimensional spin polarization with ultrafast pulsed sources

    Science.gov (United States)

    Pincelli, T.; Petrov, V. N.; Brajnik, G.; Ciprian, R.; Lollobrigida, V.; Torelli, P.; Krizmancic, D.; Salvador, F.; De Luisa, A.; Sergo, R.; Gubertini, A.; Cautero, G.; Carrato, S.; Rossi, G.; Panaccione, G.

    2016-03-01

    ULTRASPIN is an apparatus devoted to the measurement of the spin polarization (SP) of electrons ejected from solid surfaces in a UHV environment. It is designed to exploit ultrafast light sources (free electron laser or laser high harmonic generation) and to perform (photo)electron spin analysis by an arrangement of Mott scattering polarimeters that measure the full SP vector. The system consists of two interconnected UHV vessels: one for surface science sample cleaning treatments, e-beam deposition of ultrathin films, and low energy electron diffraction/AES characterization. The sample environment in the polarimeter allows for cryogenic cooling and in-operando application of electric and magnetic fields. The photoelectrons are collected by an electrostatic accelerator and transport lens that form a periaxial beam that is subsequently directed by a Y-shaped electrostatic deflector to either one of the two orthogonal Mott polarimeters. The apparatus has been designed to operate in the extreme conditions of ultraintense single-X-ray pulses as originated by free electron lasers (up to 1 kHz), but it allows also for the single electron counting mode suitable when using statistical sources such as synchrotron radiation, cw-laser, or e-gun beams (up to 150 kcps).

  19. Design and optimization of a modular setup for measurements of three-dimensional spin polarization with ultrafast pulsed sources

    Energy Technology Data Exchange (ETDEWEB)

    Pincelli, T., E-mail: pincelli@iom.cnr.it; Rossi, G. [Dipartimento di Fisica, Università degli studi di Milano, Via Celoria 16, 20133 Milano (Italy); Laboratorio TASC, IOM-CNR, S.S. 14 km 163.5, Basovizza, 34149 Trieste (Italy); Petrov, V. N. [Saint Petersburg State Polytechnical University, Politechnicheskaya Street 29, 195251 Saint Petersburg (Russian Federation); Brajnik, G.; Carrato, S. [Università degli Studi di Trieste, Piazzale Europa 1, 34127 Trieste (Italy); Ciprian, R.; Torelli, P.; Krizmancic, D.; Salvador, F.; De Luisa, A.; Panaccione, G. [Laboratorio TASC, IOM-CNR, S.S. 14 km 163.5, Basovizza, 34149 Trieste (Italy); Lollobrigida, V. [Dipartimento di Matematica e Fisica, Università Roma Tre, I-00146 Rome (Italy); Sergo, R.; Gubertini, A.; Cautero, G. [Sincrotrone Trieste S.C.p.A, Strada Statale 14-km 163.5 in AREA Science Park, Basovizza, 34149 Trieste (Italy)

    2016-03-15

    ULTRASPIN is an apparatus devoted to the measurement of the spin polarization (SP) of electrons ejected from solid surfaces in a UHV environment. It is designed to exploit ultrafast light sources (free electron laser or laser high harmonic generation) and to perform (photo)electron spin analysis by an arrangement of Mott scattering polarimeters that measure the full SP vector. The system consists of two interconnected UHV vessels: one for surface science sample cleaning treatments, e-beam deposition of ultrathin films, and low energy electron diffraction/AES characterization. The sample environment in the polarimeter allows for cryogenic cooling and in-operando application of electric and magnetic fields. The photoelectrons are collected by an electrostatic accelerator and transport lens that form a periaxial beam that is subsequently directed by a Y-shaped electrostatic deflector to either one of the two orthogonal Mott polarimeters. The apparatus has been designed to operate in the extreme conditions of ultraintense single-X-ray pulses as originated by free electron lasers (up to 1 kHz), but it allows also for the single electron counting mode suitable when using statistical sources such as synchrotron radiation, cw-laser, or e-gun beams (up to 150 kcps).

  20. Optimization of Experimental Conditions of the Pulsed Current GTAW Parameters for Mechanical Properties of SDSS UNS S32760 Welds Based on the Taguchi Design Method

    Science.gov (United States)

    Yousefieh, M.; Shamanian, M.; Saatchi, A.

    2012-09-01

    Taguchi design method with L9 orthogonal array was implemented to optimize the pulsed current gas tungsten arc welding parameters for the hardness and the toughness of super duplex stainless steel (SDSS, UNS S32760) welds. In this regard, the hardness and the toughness were considered as performance characteristics. Pulse current, background current, % on time, and pulse frequency were chosen as main parameters. Each parameter was varied at three different levels. As a result of pooled analysis of variance, the pulse current is found to be the most significant factor for both the hardness and the toughness of SDSS welds by percentage contribution of 71.81 for hardness and 78.18 for toughness. The % on time (21.99%) and the background current (17.81%) had also the next most significant effect on the hardness and the toughness, respectively. The optimum conditions within the selected parameter values for hardness were found as the first level of pulse current (100 A), third level of background current (70 A), first level of % on time (40%), and first level of pulse frequency (1 Hz), while they were found as the second level of pulse current (120 A), second level of background current (60 A), second level of % on time (60%), and third level of pulse frequency (5 Hz) for toughness. The Taguchi method was found to be a promising tool to obtain the optimum conditions for such studies. Finally, in order to verify experimental results, confirmation tests were carried out at optimum working conditions. Under these conditions, there were good agreements between the predicted and the experimental results for the both hardness and toughness.

  1. Design of time-pulse coded optoelectronic neuronal elements for nonlinear transformation and integration

    Science.gov (United States)

    Krasilenko, Vladimir G.; Nikolsky, Alexander I.; Lazarev, Alexander A.; Lazareva, Maria V.

    2008-03-01

    In the paper the actuality of neurophysiologically motivated neuron arrays with flexibly programmable functions and operations with possibility to select required accuracy and type of nonlinear transformation and learning are shown. We consider neurons design and simulation results of multichannel spatio-time algebraic accumulation - integration of optical signals. Advantages for nonlinear transformation and summation - integration are shown. The offered circuits are simple and can have intellectual properties such as learning and adaptation. The integrator-neuron is based on CMOS current mirrors and comparators. The performance: consumable power - 100...500 μW, signal period- 0.1...1ms, input optical signals power - 0.2...20 μW time delays - less 1μs, the number of optical signals - 2...10, integration time - 10...100 of signal periods, accuracy or integration error - about 1%. Various modifications of the neuron-integrators with improved performance and for different applications are considered in the paper.

  2. An evaluation of different target enrichment methods in pooled sequencing designs for complex disease association studies.

    Directory of Open Access Journals (Sweden)

    Aaron G Day-Williams

    Full Text Available Pooled sequencing can be a cost-effective approach to disease variant discovery, but its applicability in association studies remains unclear. We compare sequence enrichment methods coupled to next-generation sequencing in non-indexed pools of 1, 2, 10, 20 and 50 individuals and assess their ability to discover variants and to estimate their allele frequencies. We find that pooled resequencing is most usefully applied as a variant discovery tool due to limitations in estimating allele frequency with high enough accuracy for association studies, and that in-solution hybrid-capture performs best among the enrichment methods examined regardless of pool size.

  3. Conceptual design of pulsed high voltage and high precision power supply for a cyclotron auto-resonance maser (CARM) for plasma heating

    International Nuclear Information System (INIS)

    Zito, Pietro; Maffia, Giuseppe; Lampasi, Alessandro

    2015-01-01

    Highlights: • ENEA started a project to develop a cyclotron auto-resonance maser (CARM). • This facility requires an advanced pulsed high voltage power supply (HVPS). • The conceptual design answers to the performances requested for CARM HVPS. • The pulse transformer parameters were estimated according to IEEE standards. • PWM PID-based controller has been optimized to follow very fast rectangular pulses. - Abstract: Due to the high electron temperature during the plasma burning, both a higher power (>1 MW) and a higher frequency (up to 300 GHz) are required for plasma heating in future fusion experiments like DEMO. For this task, ENEA started a project to develop a cyclotron auto-resonance maser (CARM) able to produce an electron radiation in synchronism with the electromagnetic field and to transfer the electron beam kinetic energy to the plasma. This facility requires an advanced pulsed high voltage power supply (HVPS) with the following technical characteristics: variable output voltage up to 700 kV; variable pulse length in the range 5–50 μs; overshoot < 2%; rise time < 1 μs; voltage accuracy (including drop, ripple and stability) <0.1%. This paper describes the conceptual design and the technical solutions adopted to achieve the performance requested for the CARM HVPS.

  4. Conceptual design of pulsed high voltage and high precision power supply for a cyclotron auto-resonance maser (CARM) for plasma heating

    Energy Technology Data Exchange (ETDEWEB)

    Zito, Pietro, E-mail: pietro.zito@enea.it; Maffia, Giuseppe; Lampasi, Alessandro

    2015-10-15

    Highlights: • ENEA started a project to develop a cyclotron auto-resonance maser (CARM). • This facility requires an advanced pulsed high voltage power supply (HVPS). • The conceptual design answers to the performances requested for CARM HVPS. • The pulse transformer parameters were estimated according to IEEE standards. • PWM PID-based controller has been optimized to follow very fast rectangular pulses. - Abstract: Due to the high electron temperature during the plasma burning, both a higher power (>1 MW) and a higher frequency (up to 300 GHz) are required for plasma heating in future fusion experiments like DEMO. For this task, ENEA started a project to develop a cyclotron auto-resonance maser (CARM) able to produce an electron radiation in synchronism with the electromagnetic field and to transfer the electron beam kinetic energy to the plasma. This facility requires an advanced pulsed high voltage power supply (HVPS) with the following technical characteristics: variable output voltage up to 700 kV; variable pulse length in the range 5–50 μs; overshoot < 2%; rise time < 1 μs; voltage accuracy (including drop, ripple and stability) <0.1%. This paper describes the conceptual design and the technical solutions adopted to achieve the performance requested for the CARM HVPS.

  5. Optimal MR pulse sequences for hepatic hemangiomas : comparison of T2-weighted turbo-spin-echo, T2-weighted breath-hold turbo-spin-echo, and T1-weighted FLASH dynamic imaging

    International Nuclear Information System (INIS)

    Wang, Wen Chao; Choi, Byung Ihn; Han, Joon Koo; Kim, Tae Kyoung; Cho, Soon Gu

    1997-01-01

    To optimize MR imaging pulse sequences in the imaging of hepatic hemangioma and to evaluate on dynamic MR imaging the enhancing characteristics of the lesions. Twenty patients with 35 hemangiomas were studied by using Turbo-spin-echo (TSE) sequence (T2-weighted, T2- and heavily T2-weighted breath-hold) and T1-weighted FLASH imaging acquired before, immediately on, and 1, 3 and 5 minutes after injection of a bolus of Gd-DTPA (0.1mmol/kg). Phased-array multicoil was employed. Images were quantitatively analyzed for lesion-to-liver signal difference to noise ratios (SD/Ns), and lesion-to-liver signal ratios (H/Ls), and qualitatively analyzed for lesion conspicuity. The enhancing characteristics of the hemangiomas were described by measuring the change of signal intensity as a curve in T1-weighted FLASH dynamic imaging. For T2-weighted images, breath-hold T2-weighted TSE had a slightly higher SD/N than other pulse sequences, but there was no statistical difference in three fast pulse sequences (p=0.211). For lesion conspicuity, heavily T2-weighted breath-hold TSE images was superior to T2-weighted breath-hold or non-breath-hold TSE (H/L, 5.75, 3.81, 2.87, respectively, p<0.05). T2-weighted breath-hold TSE imaging was more effective than T2-weighted TSE imaging in removing lesion blurring or lack of sharpness, and there was a 12-fold decrease in acquisition time (20sec versus 245 sec). T1-weighted FLASH dynamic images of normal liver showed peak enhancement at less than 1 minute, and of hemangioma at more than 3 minutes;the degree of enhancement for hemangioma decreased after a 3 minute delay. T2-weighed breath-hold TSE imaging and Gd-DTPA enhanced FLASH dynamic imaging with 5 minutes delay are sufficient for imaging hepatic hemangiomas

  6. Design of Tail-Clamp Peptide Nucleic Acid Tethered with Azobenzene Linker for Sequence-Specific Detection of Homopurine DNA

    Directory of Open Access Journals (Sweden)

    Shinjiro Sawada

    2017-10-01

    Full Text Available DNA carries genetic information in its sequence of bases. Synthetic oligonucleotides that can sequence-specifically recognize a target gene sequence are a useful tool for regulating gene expression or detecting target genes. Among the many synthetic oligonucleotides, tail-clamp peptide nucleic acid (TC-PNA offers advantages since it has two homopyrimidine PNA strands connected via a flexible ethylene glycol-type linker that can recognize complementary homopurine sequences via Watson-Crick and Hoogsteen base pairings and form thermally-stable PNA/PNA/DNA triplex structures. Here, we synthesized a series of TC-PNAs that can possess different lengths of azobenzene-containing linkers and studied their binding behaviours to homopurine single-stranded DNA. Introduction of azobenzene at the N-terminus amine of PNA increased the thermal stability of PNA-DNA duplexes. Further extension of the homopyrimidine PNA strand at the N-terminus of PNA-AZO further increased the binding stability of the PNA/DNA/PNA triplex to the target homopurine sequence; however, it induced TC-PNA/DNA/TC-PNA complex formation. Among these TC-PNAs, 9W5H-C4-AZO consisting of nine Watson-Crick bases and five Hoogsteen bases tethered with a beta-alanine conjugated azobenzene linker gave a stable 1:1 TC-PNA/ssDNA complex and exhibited good mismatch recognition. Our design for TC-PNA-AZO can be utilized for detecting homopurine sequences in various genes.

  7. Compression and radiation of high-power short rf pulses. II. A novel antenna array design with combined compressor/radiator elements

    KAUST Repository

    Sirenko, Kostyantyn; Pazynin, Vadim L.; Sirenko, Yu K.; Bagci, Hakan

    2011-01-01

    The paper discusses the radiation of compressed high power short RF pulses using two different types of antennas: (i) A simple monopole antenna and (ii) a novel array design, where each of the elements is constructed by combining a compressor and a

  8. Nanosecond pulsed electric fields (nsPEFs) low cost generator design using power MOSFET and Cockcroft-Walton multiplier circuit as high voltage DC source

    International Nuclear Information System (INIS)

    Sulaeman, M. Y.; Widita, R.

    2014-01-01

    Purpose: Non-ionizing radiation therapy for cancer using pulsed electric field with high intensity field has become an interesting field new research topic. A new method using nanosecond pulsed electric fields (nsPEFs) offers a novel means to treat cancer. Not like the conventional electroporation, nsPEFs able to create nanopores in all membranes of the cell, including membrane in cell organelles, like mitochondria and nucleus. NsPEFs will promote cell death in several cell types, including cancer cell by apoptosis mechanism. NsPEFs will use pulse with intensity of electric field higher than conventional electroporation, between 20–100 kV/cm and with shorter duration of pulse than conventional electroporation. NsPEFs requires a generator to produce high voltage pulse and to achieve high intensity electric field with proper pulse width. However, manufacturing cost for creating generator that generates a high voltage with short duration for nsPEFs purposes is highly expensive. Hence, the aim of this research is to obtain the low cost generator design that is able to produce a high voltage pulse with nanosecond width and will be used for nsPEFs purposes. Method: Cockcroft-Walton multiplier circuit will boost the input of 220 volt AC into high voltage DC around 1500 volt and it will be combined by a series of power MOSFET as a fast switch to obtain a high voltage with nanosecond pulse width. The motivation using Cockcroft-Walton multiplier is to acquire a low-cost high voltage DC generator; it will use capacitors and diodes arranged like a step. Power MOSFET connected in series is used as voltage divider to share the high voltage in order not to damage them. Results: This design is expected to acquire a low-cost generator that can achieve the high voltage pulse in amount of −1.5 kV with falltime 3 ns and risetime 15 ns into a 50Ω load that will be used for nsPEFs purposes. Further detailed on the circuit design will be explained at presentation

  9. Designing an optimum pulsed magnetic field by a resistance/self-inductance/capacitance discharge system and alignment of carbon nanotubes embedded in polypyrrole matrix

    Science.gov (United States)

    Kazemikia, Kaveh; Bonabi, Fahimeh; Asadpoorchallo, Ali; Shokrzadeh, Majid

    2015-02-01

    In this work, an optimized pulsed magnetic field production apparatus is designed based on a RLC (Resistance/Self-inductance/Capacitance) discharge circuit. An algorithm for designing an optimum magnetic coil is presented. The coil is designed to work at room temperature. With a minor physical reinforcement, the magnetic flux density can be set up to 12 Tesla with 2 ms duration time. In our design process, the magnitude and the length of the magnetic pulse are the desired parameters. The magnetic field magnitude in the RLC circuit is maximized on the basis of the optimal design of the coil. The variables which are used in the optimization process are wire diameter and the number of coil layers. The coil design ensures the critically damped response of the RLC circuit. The electrical, mechanical, and thermal constraints are applied to the design process. A locus of probable magnetic flux density values versus wire diameter and coil layer is provided to locate the optimum coil parameters. Another locus of magnetic flux density values versus capacitance and initial voltage of the RLC circuit is extracted to locate the optimum circuit parameters. Finally, the application of high magnetic fields on carbon nanotube-PolyPyrrole (CNT-PPy) nano-composite is presented. Scanning probe microscopy technique is used to observe the orientation of CNTs after exposure to a magnetic field. The result shows alignment of CNTs in a 10.3 Tesla, 1.5 ms magnetic pulse.

  10. DeepProbe: Information Directed Sequence Understanding and Chatbot Design via Recurrent Neural Networks

    OpenAIRE

    Yin, Zi; Chang, Keng-hao; Zhang, Ruofei

    2017-01-01

    Information extraction and user intention identification are central topics in modern query understanding and recommendation systems. In this paper, we propose DeepProbe, a generic information-directed interaction framework which is built around an attention-based sequence to sequence (seq2seq) recurrent neural network. DeepProbe can rephrase, evaluate, and even actively ask questions, leveraging the generative ability and likelihood estimation made possible by seq2seq models. DeepProbe makes...

  11. Pulsed power

    International Nuclear Information System (INIS)

    Anon.

    1977-01-01

    The key element of our pulsed power program is concentration of power in time and space by suppression of breakdown in dielectrics and in vacuum. Magnetically insulated vacuum transmission lines and magnetic suppression of insulator flashover have continued as the main reserch directions. Vacuum insulated line studies at Physics International have been expanded and a test bed at Sandia, called MITE (Magnetically Insulated Transmission Experiment), is under development. The choice for the baseline EBFA design will depend on the outcome of these studies and should be made in July 1977. The slow and intermediate speed pulsed power approaches to EBFA will be based on Proto I and Proto II results and several of the projected EBFA subsystems are presently being tested in Proto II. A further stage of power concentration, within the vacuum diode itself, would considerably ease the burden on dielectrics; methods of power multiplication involving magnetically imploded plasmas are being considered and tests have begun using the Ripple III apparatus

  12. On the effects of quantization on mismatched pulse compression filters designed using L-p norm minimization techniques

    CSIR Research Space (South Africa)

    Cilliers, Jacques E

    2007-10-01

    Full Text Available In [1] the authors introduced a technique for generating mismatched pulse compression filters for linear frequency chirp signals. The technique minimizes the sum of the pulse compression sidelobes in a p L –norm sense. It was shown that extremely...

  13. Electromagnetic Design and Losses Analysis of a High-Speed Permanent Magnet Synchronous Motor with Toroidal Windings for Pulsed Alternator

    Directory of Open Access Journals (Sweden)

    Yuan Wan

    2018-03-01

    Full Text Available The configuration of conventional high-speed Permanent Magnet Synchronous Motors (PMSMs is usually long and thin, with overlong axial end winding lengths, which is not suitable for those applications that place severe restrictions on the axial length, such as pulsed alternators. This paper first studied the key design aspects of a flat-structure high-speed PMSM. The toroidal-windings, low-conductivity material of the retaining sleeve, large airgap and segmentation of magnets were studied to reduce the axial length of the motor. The division of the stator and the employment of a non-magnetic outer stator were used to improve overall performance. Then the losses of the prototype were calculated and the factors having an influence on the losses were also investigated, after which, their effects on the total loss were evaluated. The total loss could be effectively reduced by the decrease of strand number of conductors and the division of stator, while only being slightly reduced by epoxy resin pole fillers. Metal-stack pole fillers have the same effect on the reduction of rotor loss as epoxy resin, while maintaining the good thermal-conductivity of metal. In addition, the influence of the carrier frequency of the inverter on the losses was analyzed, and it was found that high carrier frequency was helpful to reduce rotor losses. Finally, a small-scale prototype was manufactured and the experimental results were provided.

  14. Design of six pulse bridge multiplication converter model for current harmonic elimination of three phase ac-dc converter

    International Nuclear Information System (INIS)

    Soomro, M.A.; Helepoto, I.A.

    2014-01-01

    The recent development of semiconductor technology and wide spread use of power electronic devices in power system have open the era of the power system harmonics due to increasing penetration of non-linear loads. Harmonics are widely admitted as most important issues of power quality which must be eliminated to maintain power system reliability. The tolerable THD (Total Harmonic Distortion) values must be bounded in well-defined limits recognized by IEEE-519 standard. In this work, in order to eliminate the current harmonics produced by non-linear loads, six pulse multiplication converter technique in conjunction with STSSHPE (Single Tuned Shunt Harmonic Passive Filter) is proposed. The proposed model has the capacity of harmonic cancellation of the dominant 3rd order harmonics. Besides that, the 5th and 7th order harmonics are also reduced to a diminishing level. The hardware model has been experimentally tested by PQA (Power Quality Analyzer) and simulation model is designed using MATLAB software. The acquired results have been measured by considering THD values in terms of current and voltage. Furthermore, they have been compared against IEEE-519 performance standards. The prosed model, successfully bounds the total harmonic distortion under defined limits by IEEE-519 standard. (author)

  15. Design and implementation of an optimal laser pulse front tilting scheme for ultrafast electron diffraction in reflection geometry with high temporal resolution

    Directory of Open Access Journals (Sweden)

    Francesco Pennacchio

    2017-07-01

    Full Text Available Ultrafast electron diffraction is a powerful technique to investigate out-of-equilibrium atomic dynamics in solids with high temporal resolution. When diffraction is performed in reflection geometry, the main limitation is the mismatch in group velocity between the overlapping pump light and the electron probe pulses, which affects the overall temporal resolution of the experiment. A solution already available in the literature involved pulse front tilt of the pump beam at the sample, providing a sub-picosecond time resolution. However, in the reported optical scheme, the tilted pulse is characterized by a temporal chirp of about 1 ps at 1 mm away from the centre of the beam, which limits the investigation of surface dynamics in large crystals. In this paper, we propose an optimal tilting scheme designed for a radio-frequency-compressed ultrafast electron diffraction setup working in reflection geometry with 30 keV electron pulses containing up to 105 electrons/pulse. To characterize our scheme, we performed optical cross-correlation measurements, obtaining an average temporal width of the tilted pulse lower than 250 fs. The calibration of the electron-laser temporal overlap was obtained by monitoring the spatial profile of the electron beam when interacting with the plasma optically induced at the apex of a copper needle (plasma lensing effect. Finally, we report the first time-resolved results obtained on graphite, where the electron-phonon coupling dynamics is observed, showing an overall temporal resolution in the sub-500 fs regime. The successful implementation of this configuration opens the way to directly probe structural dynamics of low-dimensional systems in the sub-picosecond regime, with pulsed electrons.

  16. High-density rhesus macaque oligonucleotide microarray design using early-stage rhesus genome sequence information and human genome annotations

    Directory of Open Access Journals (Sweden)

    Magness Charles L

    2007-01-01

    Full Text Available Abstract Background Until recently, few genomic reagents specific for non-human primate research have been available. To address this need, we have constructed a macaque-specific high-density oligonucleotide microarray by using highly fragmented low-pass sequence contigs from the rhesus genome project together with the detailed sequence and exon structure of the human genome. Using this method, we designed oligonucleotide probes to over 17,000 distinct rhesus/human gene orthologs and increased by four-fold the number of available genes relative to our first-generation expressed sequence tag (EST-derived array. Results We constructed a database containing 248,000 exon sequences from 23,000 human RefSeq genes and compared each human exon with its best matching sequence in the January 2005 version of the rhesus genome project list of 486,000 DNA contigs. Best matching rhesus exon sequences for each of the 23,000 human genes were then concatenated in the proper order and orientation to produce a rhesus "virtual transcriptome." Microarray probes were designed, one per gene, to the region closest to the 3' untranslated region (UTR of each rhesus virtual transcript. Each probe was compared to a composite rhesus/human transcript database to test for cross-hybridization potential yielding a final probe set representing 18,296 rhesus/human gene orthologs, including transcript variants, and over 17,000 distinct genes. We hybridized mRNA from rhesus brain and spleen to both the EST- and genome-derived microarrays. Besides four-fold greater gene coverage, the genome-derived array also showed greater mean signal intensities for genes present on both arrays. Genome-derived probes showed 99.4% identity when compared to 4,767 rhesus GenBank sequence tag site (STS sequences indicating that early stage low-pass versions of complex genomes are of sufficient quality to yield valuable functional genomic information when combined with finished genome information from

  17. Application of Box-Behnken designs in parameters optimization of differential pulse anodic stripping voltammetry for lead(II) determination in two electrolytes.

    Science.gov (United States)

    Yu, Xiao-Lan; He, Yong

    2017-06-05

    Box-Behnken design was advantageous to parameters optimization of differential pulse anodic stripping voltammetry (DPASV) for the analysis of lead(II) with its high efficiency and accuracy. Five Box-Behnken designs were designed and conducted in the electrolyte of 0.1 mol/L acetate buffer and 0.1 mol/L HCl without the removal of oxygen. Significant parameters and interactions in each electrolyte were found (P-value Box-Behnken designs in parameters optimization of DPASV for lead(II) determination regardless of the electrolyte kinds.

  18. Can Natural Proteins Designed with ‘Inverted’ Peptide Sequences Adopt Native-Like Protein Folds?

    Science.gov (United States)

    Sridhar, Settu; Guruprasad, Kunchur

    2014-01-01

    We have carried out a systematic computational analysis on a representative dataset of proteins of known three-dimensional structure, in order to evaluate whether it would possible to ‘swap’ certain short peptide sequences in naturally occurring proteins with their corresponding ‘inverted’ peptides and generate ‘artificial’ proteins that are predicted to retain native-like protein fold. The analysis of 3,967 representative proteins from the Protein Data Bank revealed 102,677 unique identical inverted peptide sequence pairs that vary in sequence length between 5–12 and 18 amino acid residues. Our analysis illustrates with examples that such ‘artificial’ proteins may be generated by identifying peptides with ‘similar structural environment’ and by using comparative protein modeling and validation studies. Our analysis suggests that natural proteins may be tolerant to accommodating such peptides. PMID:25210740

  19. MRI of the wrist: Comparison of high resolution pulse sequences and different fat-suppression techniques; Magnetresonanztomographie des Handgelenks - Vergleich hochaufloesender Pulssequenzen und unterschiedlicher Fettsignalunterdrueckungen an Leichenpraeparaten

    Energy Technology Data Exchange (ETDEWEB)

    Staebler, A.; Spieker, A.; Bonel, H.; Glaser, C.; Reiser, M. [Klinikum Grosshadern, Muenchen (Germany). Inst. fuer Radiologische Diagnostik; Schrank, C.; Putz, R. [Muenchen Univ. (Germany). Anatomische Anstalt; Petsch, R. [Siemens AG, Erlangen (Germany). Unternehmensbereich Medizinische Technik

    2000-02-01

    Purpose: To evaluate high resolution sequences with and without fat-suppression techniques for MR imaging of the wrist. Results: The highest homogeneity and the least artifacts were achieved by the T{sub 1}-w SE sequence. For the STIR and PD-FS TSE sequence high rankings were found for the detection of free water. The PD FS sequence had high ranking also for visualization of the SL ligament and the triangular fibrocartilage. The best sequence for the assessment of hyaline cartilage was the FLASH-FS sequence. For detailed analysis of bony structures the CISS sequence performed best. Conclusion: The isolated use of a PD-FS-TSE sequence enables for evaluation of all clinically relevant structures at the wrist. Dedicated questions for hyaline cartilage are answered best by the use of a FLASH 3D-FS sequence. Selective water excitation reduces acquisition time to 60%, nevertheless FS sequences are still diagnostically superior to WE sequences. (orig./AJ) [German] Ziel: Beurteilung der Wertigkeit hochaufloesender MRT-Sequenzen ohne und mit Fettsignalunterdrueckung (FS) und selektiver Wasseranregung (WE) fuer Untersuchungen des Handgelenkes. Ergebnisse: SE-T{sub 1} zeigte die hoechste Signalhomogenitaet bei geringsten Artefakten. Die STIR und PD FS-Sequenz stellten Signal von freiem Wasser am besten dar. Die beste Knorpeldarstellung erreicht die FLASH 3D-FS-Sequenz. Die Kortikalis und die Spongiosa konnten am besten mit der CISS-Sequenz beurteilt werden. Die FS-Sequenzen waren den WE-Sequenzen diagnostisch ueberlegen. Schlussfolgerungen: Mit der PD FS TSE-Sequenz mit verlaengerter Echozeit ist eine gute Beurteilung aller klinisch wichtigen Strukturen moeglich. Die beste Darstellung des hyalinen Knorpels wird mit der FLASH-3D-FS-, des Knochens mit der CISS-Sequenz erreicht. Die selektive Wasseranregung bei FLASH- und DESS-Sequenzen reduziert die Aufnahmezeit, ohne die diagnostische Aussagekraft der FS-Sequenzen zu erreichen. (orig./AJ)

  20. A Ring-shaped photodiode designed for use in a reflectance pulse oximetry sensor in wireless health monitoring applications

    DEFF Research Database (Denmark)

    Duun, Sune; Haahr, Rasmus Grønbek; Birkelund, Karen

    2010-01-01

    We report a photodiode for use in a reflectance pulse oximeter for use in autonomous and low-power homecare applications. The novelty of the reflectance pulse oximeter is a large ring shaped backside silicon pn photodiode. The ring-shaped photodiode gives optimal gathering of light and thereby...... enable very low light-emitting diode (LED) driving currents for the pulse oximeter. The photodiode also have a two layer SiO2/SiN interference filter yielding 98% transmission at the measuring wavelengths, 660 nm and 940 nm, and suppressing other wavelengths down to 50% transmission. The photodiode has...

  1. Design of a high charge (10 - 100 nC) and short pulse (2 - 5 ps) rf photocathode gun for wakefield acceleration

    International Nuclear Information System (INIS)

    Gai, W.

    1998-01-01

    In this paper we present a design report on a 1-1/2 cell, L Band RF photocathode gun that is capable of generating and accelerating electron beams with peak currents >10 kA. We have performed simulation for bunch intensities in the range of 10-100 nC with peak axial electrical field at the photocathode of 30-100 MV/m. Unlike conventional short electron pulse generation, this design does not require magnetic pulse compression. Based on numerical simulations using SUPERFISH and PARMELA, this design will produce 20-100 nC beam at 18 MeV with rms bunch length 0.6-1.25 mm and normalized transverse emittance 30-108 mm mrad. Applications of this beam for wakefield acceleration is also discussed

  2. Thermo mechanical design of normal-conducting deflecting cavities at the Advanced Photon Source for short x-ray pulse generation.

    Energy Technology Data Exchange (ETDEWEB)

    Brajuskovic, B.; Collins, J.; Den Hartog, P.; Morrison, L.; Waldschmidt, G.

    2008-01-01

    A normal-conducting deflecting cavity is being designed at the Advanced Photon Source (APS) as a part of the short x-ray pulse project intended to provide users with approximately 2 picosecond x-rays. The system will use two pairs of 3-cell cavities in sectors 6ID and 7ID for the generation of the x-ray pulse in the 7ID beamline. The 3-cell cavities are designed to provide the desired beam deflection while absorbing in excess of 4 kW of power from a pulsed rf system and up to 2.6 kW in the damper system of high-order mode (HOM) and low-order mode (LOM) waveguides. Since the cavity frequency is very sensitive to thermal expansion, the cooling water system is designed so that it is able to control cavity temperature to within 0.1 C. This paper describes the optimization of the thermomechanical design of the cavity based on calculation of thermal stresses and displacement caused by the generated heat loads, and presents the design of a cooling water system required for the proper operation of the cavities.

  3. Characterization of Mycoplasma hyosynoviae strains by amplified fragment length polymorphism analysis, pulsed-field gel electrophoresis and 16S ribosomal DNA sequencing

    DEFF Research Database (Denmark)

    Kokotovic, Branko; Friis, N.F.; Ahrens, Peter

    2002-01-01

    , were investigated by analysis of amplified fragment length polymorphisms of the Bgl II and Mfe I restriction sites and by pulsed-field gel electrophoresis of a Bss HII digest of chromosomal DNA. Both methods allowed unambiguous differentiation of the analysed strains and showed similar discriminatory...

  4. Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing.

    Directory of Open Access Journals (Sweden)

    Yaron Orenstein

    2017-10-01

    Full Text Available With the rapidly increasing volume of deep sequencing data, more efficient algorithms and data structures are needed. Minimizers are a central recent paradigm that has improved various sequence analysis tasks, including hashing for faster read overlap detection, sparse suffix arrays for creating smaller indexes, and Bloom filters for speeding up sequence search. Here, we propose an alternative paradigm that can lead to substantial further improvement in these and other tasks. For integers k and L > k, we say that a set of k-mers is a universal hitting set (UHS if every possible L-long sequence must contain a k-mer from the set. We develop a heuristic called DOCKS to find a compact UHS, which works in two phases: The first phase is solved optimally, and for the second we propose several efficient heuristics, trading set size for speed and memory. The use of heuristics is motivated by showing the NP-hardness of a closely related problem. We show that DOCKS works well in practice and produces UHSs that are very close to a theoretical lower bound. We present results for various values of k and L and by applying them to real genomes show that UHSs indeed improve over minimizers. In particular, DOCKS uses less than 30% of the 10-mers needed to span the human genome compared to minimizers. The software and computed UHSs are freely available at github.com/Shamir-Lab/DOCKS/ and acgt.cs.tau.ac.il/docks/, respectively.

  5. Design of pulsed perforated-plate columns for industrial scale mass transfer applications - present experience and the need for a model based approach

    International Nuclear Information System (INIS)

    Roy, Amitava

    2010-01-01

    Mass transfer is a vital unit operation in the processing of spent nuclear fuel in the backend of closed fuel cycle and Pulsed perforated plate extraction columns are used as mass transfer device for more than five decades. The pulsed perforated plate column is an agitated differential contactor, which has wide applicability due to its simplicity, high mass transfer efficiency, high through put, suitability for maintenance free remote operation, ease of cleaning/decontamination and cost effectiveness. Design of pulsed columns are based on a model proposed to describe the hydrodynamics and mass transfer. In equilibrium stage model, the HETS values are obtained from pilot plant experiments and then scaled empirically to design columns for industrial application. The dispersion model accounts for mass transfer kinetics and back-mixing. The drop population balance model can describe complex hydrodynamics of dispersed phase, that is, drop formation, break-up and drop-to-drop interactions. In recent years, significant progress has been made to model pulsed columns using CFD, which provides complete mathematical description of hydrodynamics in terms of spatial distribution of flow fields and 3D visualization. Under the condition of pulsation, the poly-dispersed nature of turbulent droplet swarm renders modeling difficult. In the absence of industry acceptance of proposed models, the conventional chemical engineering practice is to use HETS-NTS concept or HTU-NTU approach to design extraction columns. The practicability of HTU-NTU approach has some limitations due to the lack of experimental data on individual film mass transfer coefficients. Presently, the HETS-NTS concept has been used for designing the columns, which has given satisfactory performance. The design objective is mainly to arrive at the diameter and height of the mass transfer section for a specific plate geometry, fluid properties and pulsing condition to meet the intended throughput (capacity) and mass

  6. The mechanism and design of sequencing batch reactor systems for nutrient removal--the state of the art.

    Science.gov (United States)

    Artan, N; Wilderer, P; Orhon, D; Morgenroth, E; Ozgür, N

    2001-01-01

    The Sequencing Batch Reactor (SBR) process for carbon and nutrient removal is subject to extensive research, and it is finding a wider application in full-scale installations. Despite the growing popularity, however, a widely accepted approach to process analysis and modeling, a unified design basis, and even a common terminology are still lacking; this situation is now regarded as the major obstacle hindering broader practical application of the SBR. In this paper a rational dimensioning approach is proposed for nutrient removal SBRs based on scientific information on process stoichiometry and modelling, also emphasizing practical constraints in design and operation.

  7. Conceptual designs of two petawatt-class pulsed-power accelerators for high-energy-density-physics experiments

    Directory of Open Access Journals (Sweden)

    W. A. Stygar

    2015-11-01

    Full Text Available We have developed conceptual designs of two petawatt-class pulsed-power accelerators: Z 300 and Z 800. The designs are based on an accelerator architecture that is founded on two concepts: single-stage electrical-pulse compression and impedance matching [Phys. Rev. ST Accel. Beams 10, 030401 (2007]. The prime power source of each machine consists of 90 linear-transformer-driver (LTD modules. Each module comprises LTD cavities connected electrically in series, each of which is powered by 5-GW LTD bricks connected electrically in parallel. (A brick comprises a single switch and two capacitors in series. Six water-insulated radial-transmission-line impedance transformers transport the power generated by the modules to a six-level vacuum-insulator stack. The stack serves as the accelerator’s water-vacuum interface. The stack is connected to six conical outer magnetically insulated vacuum transmission lines (MITLs, which are joined in parallel at a 10-cm radius by a triple-post-hole vacuum convolute. The convolute sums the electrical currents at the outputs of the six outer MITLs, and delivers the combined current to a single short inner MITL. The inner MITL transmits the combined current to the accelerator’s physics-package load. Z 300 is 35 m in diameter and stores 48 MJ of electrical energy in its LTD capacitors. The accelerator generates 320 TW of electrical power at the output of the LTD system, and delivers 48 MA in 154 ns to a magnetized-liner inertial-fusion (MagLIF target [Phys. Plasmas 17, 056303 (2010]. The peak electrical power at the MagLIF target is 870 TW, which is the highest power throughout the accelerator. Power amplification is accomplished by the centrally located vacuum section, which serves as an intermediate inductive-energy-storage device. The principal goal of Z 300 is to achieve thermonuclear ignition; i.e., a fusion yield that exceeds the energy transmitted by the accelerator to the liner. 2D magnetohydrodynamic

  8. Design and preliminary characterization of a miniature pulsed RF APGD torch with downstream injection of the source of reactive species

    International Nuclear Information System (INIS)

    Leveille, V; Coulombe, S

    2005-01-01

    The design of a miniature low-power atmospheric pressure glow discharge torch (APGD-t) and the results of its preliminary electrical and spectroscopic characterization are presented. A capacitively-coupled pulsed RF (13.56 MHz) helium plasma jet is formed in a converging confinement tube and O 2 is injected downstream in the plasma afterglow region through a capillary electrode. With 1 SLM He, the APGD-t produced a non-thermal plasma jet of 500 μm-diameter and ∼2.5 mm-long at power levels ranging from 1 to 5 W. At ∼1 W, the gas temperature and He excitation temperature near the nozzle exit were ∼50 0 C and slightly below 2000 K, respectively. The breakdown voltage in 1 SLM He is approximately 220 V pk-to-0 . Careful electric probe measurements and circuit analysis revealed the strong effect of the voltage probe on the total load impedance. The injection of 10 SCCM O 2 through the capillary electrode led to the transport of atomic O further downstream in the plasma jet and to a slight increase of the He excitation temperature without significant effects on the electrical properties and jet length. Alternatively, the addition of an equivalent amount of O 2 (1 v/v%) to the plasma-forming gas affected the electrical properties slightly, but led to a drastic contraction of the plasma jet. The atomic oxygen production and transport conditions provided by the APGD-t are promising for precise bio-applications such as the treatment of skin tissues and cells

  9. Dynamic pulse difference circuit

    International Nuclear Information System (INIS)

    Erickson, G.L.

    1978-01-01

    A digital electronic circuit of especial use for subtracting background activity pulses in gamma spectrometry is disclosed which comprises an up-down counter connected to count up with signal-channel pulses and to count down with background-channel pulses. A detector responsive to the count position of the up-down counter provides a signal when the up-down counter has completed one scaling sequence cycle of counts in the up direction. In an alternate embodiment, a detector responsive to the count position of the up-down counter provides a signal upon overflow of the counter

  10. Design and control of an alternative distillation sequence for bioethanol purification

    DEFF Research Database (Denmark)

    Errico, Massimiliano; Ramírez-Márquez, César; Torres Ortega, Carlo Edgar

    2015-01-01

    BACKGROUND: Bioethanol is a green fuel considered to be a sustainable alternative to petro-derived gasoline. The transport sector contributes significantly to carbon dioxide emission and consequently has a negative impact on the air quality and is responsible for the increase of the greenhouse...... separation is presented. The steady state performance and the dynamic beavior are analyzed compared with the classical configuration reported in the literature. RESULTS: Ethanol-water azeotropic separation represents a challenge for bioethanol purification. Usually a three column sequence is used to obtain...... fuel grade bioethanol by extractive distillation. In order to reduce bioethanol purification cost a two column separation sequence is proposed. This configuration shows a 10% saving in capital costs together with higher ethanol recovery and better control properties compared with the classical three...

  11. Discovery of rare variants via sequencing: implications for the design of complex trait association studies.

    Directory of Open Access Journals (Sweden)

    Bingshan Li

    2009-05-01

    Full Text Available There is strong evidence that rare variants are involved in complex disease etiology. The first step in implicating rare variants in disease etiology is their identification through sequencing in both randomly ascertained samples (e.g., the 1,000 Genomes Project and samples ascertained according to disease status. We investigated to what extent rare variants will be observed across the genome and in candidate genes in randomly ascertained samples, the magnitude of variant enrichment in diseased individuals, and biases that can occur due to how variants are discovered. Although sequencing cases can enrich for casual variants, when a gene or genes are not involved in disease etiology, limiting variant discovery to cases can lead to association studies with dramatically inflated false positive rates.

  12. Use of genome sequence data in the design and testing of SSR markers for Phytophthora species

    Directory of Open Access Journals (Sweden)

    Cardle Linda

    2008-12-01

    Full Text Available Abstract Background Microsatellites or single sequence repeats (SSRs are a powerful choice of marker in the study of Phytophthora population biology, epidemiology, ecology, genetics and evolution. A strategy was tested in which the publicly available unigene datasets extracted from genome sequences of P. infestans, P. sojae and P. ramorum were mined for candidate SSR markers that could be applied to a wide range of Phytophthora species. Results A first approach, aimed at the identification of polymorphic SSR loci common to many Phytophthora species, yielded 171 reliable sequences containing 211 SSRs. Microsatellites were identified from 16 target species representing the breadth of diversity across the genus. Repeat number ranged from 3 to 16 with most having seven repeats or less and four being the most commonly found. Trinucleotide repeats such as (AAGn, (AGGn and (AGCn were the most common followed by pentanucleotide, tetranucleotide and dinucleotide repeats. A second approach was aimed at the identification of useful loci common to a restricted number of species more closely related to P. sojae (P. alni, P. cambivora, P. europaea and P. fragariae. This analysis yielded 10 trinucleotide and 2 tetranucleotide SSRs which were repeated 4, 5 or 6 times. Conclusion Key studies on inter- and intra-specific variation of selected microsatellites remain. Despite the screening of conserved gene coding regions, the sequence diversity between species was high and the identification of useful SSR loci applicable to anything other than the most closely related pairs of Phytophthora species was challenging. That said, many novel SSR loci for species other than the three 'source species' (P. infestans, P. sojae and P. ramorum are reported, offering great potential for the investigation of Phytophthora populations. In addition to the presence of microsatellites, many of the amplified regions may represent useful molecular marker regions for other studies as

  13. DNA sequence analyses of blended herbal products including synthetic cannabinoids as designer drugs.

    Science.gov (United States)

    Ogata, Jun; Uchiyama, Nahoko; Kikura-Hanajiri, Ruri; Goda, Yukihiro

    2013-04-10

    In recent years, various herbal products adulterated with synthetic cannabinoids have been distributed worldwide via the Internet. These herbal products are mostly sold as incense, and advertised as not for human consumption. Although their labels indicate that they contain mixtures of several potentially psychoactive plants, and numerous studies have reported that they contain a variety of synthetic cannabinoids, their exact botanical contents are not always clear. In this study, we investigated the origins of botanical materials in 62 Spice-like herbal products distributed on the illegal drug market in Japan, by DNA sequence analyses and BLAST searches. The nucleotide sequences of four regions were analyzed to identify the origins of each plant species in the herbal mixtures. The sequences of "Damiana" (Turnera diffusa) and Lamiaceae herbs (Mellissa, Mentha and Thymus) were frequently detected in a number of products. However, the sequences of other plant species indicated on the packaging labels were not detected. In a few products, DNA fragments of potent psychotropic plants were found, including marijuana (Cannabis sativa), "Diviner's Sage" (Salvia divinorum) and "Kratom" (Mitragyna speciosa). Their active constituents were also confirmed using gas chromatography-mass spectrometry (GC-MS) and liquid chromatography-mass spectrometry (LC-MS), although these plant names were never indicated on the labels. Most plant species identified in the products were different from the plants indicated on the labels. The plant materials would be used mainly as diluents for the psychoactive synthetic compounds, because no reliable psychoactive effects have been reported for most of the identified plants, with the exception of the psychotropic plants named above. Copyright © 2012 Elsevier Ireland Ltd. All rights reserved.

  14. Pulse Generator

    Science.gov (United States)

    Greer, Lawrence (Inventor)

    2017-01-01

    An apparatus and a computer-implemented method for generating pulses synchronized to a rising edge of a tachometer signal from rotating machinery are disclosed. For example, in one embodiment, a pulse state machine may be configured to generate a plurality of pulses, and a period state machine may be configured to determine a period for each of the plurality of pulses.

  15. Design and Construction of an Autonomous Low-Cost Pulse Height Analyzer and a Single Channel Analyzer for Mössbauer Spectroscopy

    Science.gov (United States)

    Velásquez, A. A.; Gancedo, J. R.; Trujillo, J. M.; Morales, A. L.; Tobón, J. E.; Reyes, L.

    2005-04-01

    A multichannel analyzer (MCA) and a single channel-analyzer (SCA) for Mössbauer spectrometry application have been designed and built. Both systems include low-cost digital and analog components. A microcontroller manages, either in PHA or MCS mode, the data acquisition, data storage and setting of the pulse discriminator limits. The user can monitor the system from an external PC through the serial port with the RS232 communication protocol. A graphic interface made with the LabVIEW software allows the user to adjust digitally the lower and upper limits of the pulse discriminator, and to visualize as well as save the PHA spectra in a file. The system has been tested using a 57Co radioactive source and several iron compounds, yielding satisfactory results. The low cost of its design, construction and maintenance make this equipment an attractive choice when assembling a Mössbauer spectrometer.

  16. Computer-aided engineering system for design of sequence arrays and lithographic masks

    Science.gov (United States)

    Hubbell, Earl A.; Morris, MacDonald S.; Winkler, James L.

    1996-01-01

    An improved set of computer tools for forming arrays. According to one aspect of the invention, a computer system (100) is used to select probes and design the layout of an array of DNA or other polymers with certain beneficial characteristics. According to another aspect of the invention, a computer system uses chip design files (104) to design and/or generate lithographic masks (110).

  17. Random-effects linear modeling and sample size tables for two special crossover designs of average bioequivalence studies: the four-period, two-sequence, two-formulation and six-period, three-sequence, three-formulation designs.

    Science.gov (United States)

    Diaz, Francisco J; Berg, Michel J; Krebill, Ron; Welty, Timothy; Gidal, Barry E; Alloway, Rita; Privitera, Michael

    2013-12-01

    Due to concern and debate in the epilepsy medical community and to the current interest of the US Food and Drug Administration (FDA) in revising approaches to the approval of generic drugs, the FDA is currently supporting ongoing bioequivalence studies of antiepileptic drugs, the EQUIGEN studies. During the design of these crossover studies, the researchers could not find commercial or non-commercial statistical software that quickly allowed computation of sample sizes for their designs, particularly software implementing the FDA requirement of using random-effects linear models for the analyses of bioequivalence studies. This article presents tables for sample-size evaluations of average bioequivalence studies based on the two crossover designs used in the EQUIGEN studies: the four-period, two-sequence, two-formulation design, and the six-period, three-sequence, three-formulation design. Sample-size computations assume that random-effects linear models are used in bioequivalence analyses with crossover designs. Random-effects linear models have been traditionally viewed by many pharmacologists and clinical researchers as just mathematical devices to analyze repeated-measures data. In contrast, a modern view of these models attributes an important mathematical role in theoretical formulations in personalized medicine to them, because these models not only have parameters that represent average patients, but also have parameters that represent individual patients. Moreover, the notation and language of random-effects linear models have evolved over the years. Thus, another goal of this article is to provide a presentation of the statistical modeling of data from bioequivalence studies that highlights the modern view of these models, with special emphasis on power analyses and sample-size computations.

  18. Interpretation of custom designed Illumina genotype cluster plots for targeted association studies and next-generation sequence validation

    Directory of Open Access Journals (Sweden)

    Tindall Elizabeth A

    2010-02-01

    Full Text Available Abstract Background High-throughput custom designed genotyping arrays are a valuable resource for biologically focused research studies and increasingly for validation of variation predicted by next-generation sequencing (NGS technologies. We investigate the Illumina GoldenGate chemistry using custom designed VeraCode and sentrix array matrix (SAM assays for each of these applications, respectively. We highlight applications for interpretation of Illumina generated genotype cluster plots to maximise data inclusion and reduce genotyping errors. Findings We illustrate the dramatic effect of outliers in genotype calling and data interpretation, as well as suggest simple means to avoid genotyping errors. Furthermore we present this platform as a successful method for two-cluster rare or non-autosomal variant calling. The success of high-throughput technologies to accurately call rare variants will become an essential feature for future association studies. Finally, we highlight additional advantages of the Illumina GoldenGate chemistry in generating unusually segregated cluster plots that identify potential NGS generated sequencing error resulting from minimal coverage. Conclusions We demonstrate the importance of visually inspecting genotype cluster plots generated by the Illumina software and issue warnings regarding commonly accepted quality control parameters. In addition to suggesting applications to minimise data exclusion, we propose that the Illumina cluster plots may be helpful in identifying potential in-put sequence errors, particularly important for studies to validate NGS generated variation.

  19. Pulsed WIP electron gun. Final report: design phase 1 x 70 cm cooled WIP electron gun, 1 December 1978--2 February 1979

    International Nuclear Information System (INIS)

    Wakalopulos, G.; Gresko, L.

    1979-01-01

    Presented here are design criteria for a full scale (70 cm) WIP electron gun system capable of long run operation with the following specifications: foil area approx. 70 x 1 cm, electron beam current density approx. 1 A/cm 2 , pulse length 2 , voltage -150 kV, voltage droop < 10%, Rep rate approx. 10 KHz, power approx. 20 kW, run time approx. 30 min, and jitter approx. 10 μs

  20. Coaxial pulse matching transformer

    International Nuclear Information System (INIS)

    Ledenev, V.V.; Khimenko, L.T.

    1986-01-01

    This paper describes a coaxial pulse matching transformer with comparatively simple design, increased mechanical strength, and low stray inductance. The transformer design makes it easy to change the turns ratio. The circuit of the device and an expression for the current multiplication factor are presented; experiments confirm the efficiency of the transformer. Apparatus with a coaxial transformer for producing high-power pulsed magnetic fields is designed (current pulses of 1-10 MA into a load and a natural frequency of 100 kHz)

  1. Conserved PCR primer set designing for closely-related species to complete mitochondrial genome sequencing using a sliding window-based PSO algorithm.

    Directory of Open Access Journals (Sweden)

    Cheng-Hong Yang

    Full Text Available BACKGROUND: Complete mitochondrial (mt genome sequencing is becoming increasingly common for phylogenetic reconstruction and as a model for genome evolution. For long template sequencing, i.e., like the entire mtDNA, it is essential to design primers for Polymerase Chain Reaction (PCR amplicons which are partly overlapping each other. The presented chromosome walking strategy provides the overlapping design to solve the problem for unreliable sequencing data at the 5' end and provides the effective sequencing. However, current algorithms and tools are mostly focused on the primer design for a local region in the genomic sequence. Accordingly, it is still challenging to provide the primer sets for the entire mtDNA. METHODOLOGY/PRINCIPAL FINDINGS: The purpose of this study is to develop an integrated primer design algorithm for entire mt genome in general, and for the common primer sets for closely-related species in particular. We introduce ClustalW to generate the multiple sequence alignment needed to find the conserved sequences in closely-related species. These conserved sequences are suitable for designing the common primers for the entire mtDNA. Using a heuristic algorithm particle swarm optimization (PSO, all the designed primers were computationally validated to fit the common primer design constraints, such as the melting temperature, primer length and GC content, PCR product length, secondary structure, specificity, and terminal limitation. The overlap requirement for PCR amplicons in the entire mtDNA is satisfied by defining the overlapping region with the sliding window technology. Finally, primer sets were designed within the overlapping region. The primer sets for the entire mtDNA sequences were successfully demonstrated in the example of two closely-related fish species. The pseudo code for the primer design algorithm is provided. CONCLUSIONS/SIGNIFICANCE: In conclusion, it can be said that our proposed sliding window-based PSO

  2. Ultrashort Laser Pulse Phenomena

    CERN Document Server

    Diels, Jean-Claude

    2006-01-01

    Ultrashort Laser Pulse Phenomena, 2e serves as an introduction to the phenomena of ultra short laser pulses and describes how this technology can be used to examine problems in areas such as electromagnetism, optics, and quantum mechanics. Ultrashort Laser Pulse Phenomena combines theoretical backgrounds and experimental techniques and will serve as a manual on designing and constructing femtosecond (""faster than electronics"") systems or experiments from scratch. Beyond the simple optical system, the various sources of ultrashort pulses are presented, again with emphasis on the basic

  3. Research on temperature characteristics of laser energy meter absorber irradiated by ms magnitude long pulse laser

    Science.gov (United States)

    Li, Nan; Qiao, Chunhong; Fan, Chengyu; Zhang, Jinghui; Yang, Gaochao

    2017-10-01

    The research on temperature characteristics for large-energy laser energy meter absorber is about continuous wave (CW) laser before. For the measuring requirements of millisecond magnitude long pulse laser energy, the temperature characteristics for absorber are numerically calculated and analyzed. In calculation, the temperature field distributions are described by heat conduction equations, and the metal cylinder cavity is used for absorber model. The results show that, the temperature of absorber inwall appears periodic oscillation with pulse structure, the oscillation period and amplitude respectively relate to the pulse repetition frequency and single pulse energy. With the wall deep increasing, the oscillation amplitude decreases rapidly. The temperature of absorber outerwall is without periodism, and rises gradually with time. The factors to affect the temperature rise of absorber are single pulse energy, pulse width and repetition frequency. When the laser irradiation stops, the temperature between absorber inwall and outerwall will reach agreement rapidly. After special technology processing to enhance the capacity of resisting laser damage for absorber inwall, the ms magnitude long pulse laser energy can be obtained with the method of measuring the temperature of absorber outerwall. Meanwhile, by optimization design of absorber structure, when the repetition frequency of ms magnitude pulse laser is less than 10Hz, the energy of every pulse for low repetition frequency pulse sequence can be measured. The work offers valuable references for the design of ms magnitude large-energy pulse laser energy meter.

  4. Association analysis of whole genome sequencing data accounting for longitudinal and family designs.

    Science.gov (United States)

    Hu, Yijuan; Hui, Qin; Sun, Yan V

    2014-01-01

    Using the whole genome sequencing data and the simulated longitudinal phenotypes for 849 pedigree-based individuals from Genetic Analysis Workshop 18, we investigated various approaches to detecting the association of rare and common variants with blood pressure traits. We compared three strategies for longitudinal data: (a) using the baseline measurement only, (b) using the average from multiple visits, and (c) using all individual measurements. We also compared the power of using all of the pedigree-based data and the unrelated subset. The analyses were performed without knowledge of the underlying simulating model.

  5. Genotyping by Sequencing in Almond: SNP Discovery, Linkage Mapping, and Marker Design

    Directory of Open Access Journals (Sweden)

    Shashi N. Goonetilleke

    2018-01-01

    Full Text Available In crop plant genetics, linkage maps provide the basis for the mapping of loci that affect important traits and for the selection of markers to be applied in crop improvement. In outcrossing species such as almond (Prunus dulcis Mill. D. A. Webb, application of a double pseudotestcross mapping approach to the F1 progeny of a biparental cross leads to the construction of a linkage map for each parent. Here, we report on the application of genotyping by sequencing to discover and map single nucleotide polymorphisms in the almond cultivars “Nonpareil” and “Lauranne.” Allele-specific marker assays were developed for 309 tag pairs. Application of these assays to 231 Nonpareil × Lauranne F1 progeny provided robust linkage maps for each parent. Analysis of phenotypic data for shell hardness demonstrated the utility of these maps for quantitative trait locus mapping. Comparison of these maps to the peach genome assembly confirmed high synteny and collinearity between the peach and almond genomes. The marker assays were applied to progeny from several other Nonpareil crosses, providing the basis for a composite linkage map of Nonpareil. Applications of the assays to a panel of almond clones and a panel of rootstocks used for almond production demonstrated the broad applicability of the markers and provide subsets of markers that could be used to discriminate among accessions. The sequence-based linkage maps and single nucleotide polymorphism assays presented here could be useful resources for the genetic analysis and genetic improvement of almond.

  6. Research and design of pulsed switching power supply for deep tumor therapy facility with heavy ions accelerator in Lanzhou

    International Nuclear Information System (INIS)

    Shi Chunfeng; Zhao Jiang; Yan Hongbin; Wu Fengjun; Gao Daqing

    2012-01-01

    The pulsed switching power supply was developed for deep tumor therapy facility with heavy ions in cooler-storage-ring of the heavy ions research facility in Lanzhou (HIRFL-CSR). The control principle of the dual closed-loop scheme was described and the open-loop Bode diagrams were given. The results of simulation and prototype experiment show that the current error gets much smaller than that of the single closed-loop pulsed switching power supply. Moreover, the simulation and test results were analyzed, and the circuit configuration and dual closed-loop strategy selected are practicable. (authors)

  7. Detection of small pulmonary nodules in high-field MR at 3 T: evaluation of different pulse sequences using porcine lung explants

    International Nuclear Information System (INIS)

    Regier, M.; Kaul, M.G.; Ittrich, H.; Bansmann, P.M.; Kemper, J.; Nolte-Ernsting, C.; Adam, G.; Kandel, S.; Hoffmann, B.; Heller, M.; Biederer, J.

    2007-01-01

    To evaluate two MR imaging sequences for the detection of artificial pulmonary nodules inside porcine lung explants. 67 agarose nodules ranging 3-20 mm were injected into ten porcine lungs within a dedicated chest phantom. The signal on T1-weighted images and radiopacity were adjusted by adding 0.125 mmol/l Gd-DTPA and 1.5 g/l of iodine. A T1-weighted three-dimensional gradient-echo (T1-3D-GRE; TR/TE:3.3/1.1 ms, slice:8 mm, flip-angle:10 ) and a T2-weighted half-Fourier fast-spin echo sequence (T2-HF-FSE; TR/TE:2000/66 ms, slice:7 mm, flip-angle:90 ) were applied in axial orientation using a 3-T system (Intera, Philips Medical Systems, Best, The Netherlands), followed by CT (16 x 0.5 mm) as reference. Nodule sizes and locations were assessed by three blinded observers. In nodules of >10 mm, sensitivity was 100% using 3D-GRE-MRI and 94% using the HF-FSE sequence. For nodules 6-10 mm, the sensitivity of MRI was lower than with CT (3D-GRE:92%; T2-HF-FSE:83%). In lesions smaller than 5 mm, the sensitivity declined to 80% (3D-GRE) and 53% (HF-FSE). Small lesion diameters were overestimated with both sequences, particularly with HF-FSE. This study confirms the feasibility of 3 T-MRI for lung nodule detection. In lesions greater than 5 mm, the sensitivity of the 3D-GRE sequence approximated CT (>90%), while sensitivity and PPV with the HF-FSE sequence were slightly inferior. (orig.)

  8. Properties of the unusually short pulse sequences occurring prior to the first strokes of negative cloud-to-ground lightning flashes

    Czech Academy of Sciences Publication Activity Database

    Kolmašová, Ivana; Santolík, O.; Farges, T.; Rison, W.; Lán, Radek; Uhlíř, Luděk

    2014-01-01

    Roč. 41, č. 14 (2014), s. 5316-5324 ISSN 0094-8276 R&D Projects: GA ČR(CZ) GA14-31899S Grant - others:Rada Programu interní podpory projektů mezinárodní spolupráce AV ČR M100421206 Institutional support: RVO:68378289 Keywords : lightning initiation * preliminary breakdown pulses * duration of breakdown process Subject RIV: BL - Plasma and Gas Discharge Physics Impact factor: 4.456, year: 2013 http://onlinelibrary.wiley.com/doi/10.1002/2014GL060913/abstract

  9. SU-E-J-231: Comparison of Delineation Variability of Soft Tissue Volume and Position in Head-And-Neck Between Two T1-Weighted Pulse Sequences Using An MR-Simulator with Immobilization

    Energy Technology Data Exchange (ETDEWEB)

    Wong, O; Lo, G; Yuan, J; Law, M; Ding, A; Cheng, K; Chan, K; Cheung, K; Yu, S [Hong Kong Sanatorium & Hospital, Hong Kong (Hong Kong)

    2015-06-15

    Purpose: There is growing interests in applying MR-simulator(MR-sim) in radiotherapy but MR images subject to hardware, patient and pulse sequence dependent geometric distortion that may potentially influence target definition. This study aimed to evaluate the influence on head-and-neck tissue delineation, in terms of positional and volumetric variability, of two T1-weighted(T1w) MR sequences on a 1.5T MR-sim Methods: Four healthy volunteers were scanned (4 scans for each on different days) using both spin-echo (3DCUBE, TR/TE=500/14ms, TA=183s) and gradient-echo sequences (3DFSPGR, TE/TR=7/4ms, TA=173s) with identical coverage, voxel-size(0.8×0.8×1.0mm3), receiver-bandwidth(62.5kHz/pix) and geometric correction on a 1.5T MR-sim immobilized with personalized thermoplastic cast and head-rest. Under this setting, similar T1w contrast and signal-to-noise ratio were obtained, and factors other than sequence that might bias image distortion and tissue delineation were minimized. VOIs of parotid gland(PGR, PGL), pituitary gland(PIT) and eyeballs(EyeL, EyeR) were carefully drawn, and inter-scan coefficient-of-variation(CV) of VOI centroid position and volume were calculated for each subject. Mean and standard deviation(SD) of the CVs for four subjects were compared between sequences using Wilcoxon ranksum test. Results: The mean positional(<4%) and volumetric(<7%) CVs varied between tissues, majorly dependent on tissue inherent properties like volume, location, mobility and deformability. Smaller mean volumetric CV was found in 3DCUBE, probably due to its less proneness to tissue susceptibility, but only PGL showed significant difference(P<0.05). Positional CVs had no significant differences for all VOIs(P>0.05) between sequences, suggesting volumetric variation might be more sensitive to sequence-dependent delineation difference. Conclusion: Although 3DCUBE is considered less prone to tissue susceptibility-induced artifact and distortion, our preliminary data showed

  10. Evidence-based design and evaluation of a whole genome sequencing clinical report for the reference microbiology laboratory

    Science.gov (United States)

    Crisan, Anamaria; McKee, Geoffrey; Munzner, Tamara

    2018-01-01

    Background Microbial genome sequencing is now being routinely used in many clinical and public health laboratories. Understanding how to report complex genomic test results to stakeholders who may have varying familiarity with genomics—including clinicians, laboratorians, epidemiologists, and researchers—is critical to the successful and sustainable implementation of this new technology; however, there are no evidence-based guidelines for designing such a report in the pathogen genomics domain. Here, we describe an iterative, human-centered approach to creating a report template for communicating tuberculosis (TB) genomic test results. Methods We used Design Study Methodology—a human centered approach drawn from the information visualization domain—to redesign an existing clinical report. We used expert consults and an online questionnaire to discover various stakeholders’ needs around the types of data and tasks related to TB that they encounter in their daily workflow. We also evaluated their perceptions of and familiarity with genomic data, as well as its utility at various clinical decision points. These data shaped the design of multiple prototype reports that were compared against the existing report through a second online survey, with the resulting qualitative and quantitative data informing the final, redesigned, report. Results We recruited 78 participants, 65 of whom were clinicians, nurses, laboratorians, researchers, and epidemiologists involved in TB diagnosis, treatment, and/or surveillance. Our first survey indicated that participants were largely enthusiastic about genomic data, with the majority agreeing on its utility for certain TB diagnosis and treatment tasks and many reporting some confidence in their ability to interpret this type of data (between 58.8% and 94.1%, depending on the specific data type). When we compared our four prototype reports against the existing design, we found that for the majority (86.7%) of design

  11. Evidence-based design and evaluation of a whole genome sequencing clinical report for the reference microbiology laboratory

    Directory of Open Access Journals (Sweden)

    Anamaria Crisan

    2018-01-01

    Full Text Available Background Microbial genome sequencing is now being routinely used in many clinical and public health laboratories. Understanding how to report complex genomic test results to stakeholders who may have varying familiarity with genomics—including clinicians, laboratorians, epidemiologists, and researchers—is critical to the successful and sustainable implementation of this new technology; however, there are no evidence-based guidelines for designing such a report in the pathogen genomics domain. Here, we describe an iterative, human-centered approach to creating a report template for communicating tuberculosis (TB genomic test results. Methods We used Design Study Methodology—a human centered approach drawn from the information visualization domain—to redesign an existing clinical report. We used expert consults and an online questionnaire to discover various stakeholders’ needs around the types of data and tasks related to TB that they encounter in their daily workflow. We also evaluated their perceptions of and familiarity with genomic data, as well as its utility at various clinical decision points. These data shaped the design of multiple prototype reports that were compared against the existing report through a second online survey, with the resulting qualitative and quantitative data informing the final, redesigned, report. Results We recruited 78 participants, 65 of whom were clinicians, nurses, laboratorians, researchers, and epidemiologists involved in TB diagnosis, treatment, and/or surveillance. Our first survey indicated that participants were largely enthusiastic about genomic data, with the majority agreeing on its utility for certain TB diagnosis and treatment tasks and many reporting some confidence in their ability to interpret this type of data (between 58.8% and 94.1%, depending on the specific data type. When we compared our four prototype reports against the existing design, we found that for the majority (86.7% of

  12. Evidence-based design and evaluation of a whole genome sequencing clinical report for the reference microbiology laboratory.

    Science.gov (United States)

    Crisan, Anamaria; McKee, Geoffrey; Munzner, Tamara; Gardy, Jennifer L

    2018-01-01

    Microbial genome sequencing is now being routinely used in many clinical and public health laboratories. Understanding how to report complex genomic test results to stakeholders who may have varying familiarity with genomics-including clinicians, laboratorians, epidemiologists, and researchers-is critical to the successful and sustainable implementation of this new technology; however, there are no evidence-based guidelines for designing such a report in the pathogen genomics domain. Here, we describe an iterative, human-centered approach to creating a report template for communicating tuberculosis (TB) genomic test results. We used Design Study Methodology-a human centered approach drawn from the information visualization domain-to redesign an existing clinical report. We used expert consults and an online questionnaire to discover various stakeholders' needs around the types of data and tasks related to TB that they encounter in their daily workflow. We also evaluated their perceptions of and familiarity with genomic data, as well as its utility at various clinical decision points. These data shaped the design of multiple prototype reports that were compared against the existing report through a second online survey, with the resulting qualitative and quantitative data informing the final, redesigned, report. We recruited 78 participants, 65 of whom were clinicians, nurses, laboratorians, researchers, and epidemiologists involved in TB diagnosis, treatment, and/or surveillance. Our first survey indicated that participants were largely enthusiastic about genomic data, with the majority agreeing on its utility for certain TB diagnosis and treatment tasks and many reporting some confidence in their ability to interpret this type of data (between 58.8% and 94.1%, depending on the specific data type). When we compared our four prototype reports against the existing design, we found that for the majority (86.7%) of design comparisons, participants preferred the

  13. Designing and evaluating a context-based lesson sequence promoting conceptual coherence in biology

    NARCIS (Netherlands)

    Ummels, M. H J; Kamp, M. J A; De Kroon, H.; Boersma, K. Th|info:eu-repo/dai/nl/073043141

    2015-01-01

    Context-based education, in which students deal with biological concepts in a meaningful way, is showing promise in promoting the development of students conceptual coherence. However, literature gives little guidance about how this kind of education should be designed. Therefore, our study aims at

  14. A Competence-Based Approach to the Design of a Teaching Sequence about Oral and Dental Health and Hygiene: A Case Study

    Science.gov (United States)

    Blanco-López, Ángel; Franco-Mariscal, Antonio Joaquín; España-Ramos, Enrique

    2016-01-01

    We present a case study to illustrate the design and implementation of a teaching sequence about oral and dental health and hygiene. This teaching sequence was aimed at year 10 students (age 15-16) and sought to develop their scientific competences. In line with the PISA assessment framework for science and the tenets of a context-based approach…

  15. Genomic relationships of Actinobacillus pleuropneumoniae serotype 2 strains evaluated by ribotyping, sequence analysis of ribosomal intergenic regions, and pulsed-field gel electrophoresis

    DEFF Research Database (Denmark)

    Fussing, V.

    1998-01-01

    The aim of the present study was to examine the genomic relationship among 112 Actinobacillus pleuropneumoniae serotype 2 strains obtained throughout Europe and North America. HindIII ribotyping of the strains resulted in five ribotypes of high similarity (87-98%). Sequence analysis of the riboso......The aim of the present study was to examine the genomic relationship among 112 Actinobacillus pleuropneumoniae serotype 2 strains obtained throughout Europe and North America. HindIII ribotyping of the strains resulted in five ribotypes of high similarity (87-98%). Sequence analysis...... of the ribosomal intergenic region of strains representing each ribotype and each country showed no differences. A common ribotype was further characterized by PFGE of 12 strains representing all countries. The resultant five PFGE patterns of European strains showed a similarity of more than 91%, to which the two...

  16. Optimum stacking sequence design of laminated composite circular plates with curvilinear fibres by a layer-wise optimization method

    Science.gov (United States)

    Guenanou, A.; Houmat, A.

    2018-05-01

    The optimum stacking sequence design for the maximum fundamental frequency of symmetrically laminated composite circular plates with curvilinear fibres is investigated for the first time using a layer-wise optimization method. The design variables are two fibre orientation angles per layer. The fibre paths are constructed using the method of shifted paths. The first-order shear deformation plate theory and a curved square p-element are used to calculate the objective function. The blending function method is used to model accurately the geometry of the circular plate. The equations of motion are derived using Lagrange's method. The numerical results are validated by means of a convergence test and comparison with published values for symmetrically laminated composite circular plates with rectilinear fibres. The material parameters, boundary conditions, number of layers and thickness are shown to influence the optimum solutions to different extents. The results should serve as a benchmark for optimum stacking sequences of symmetrically laminated composite circular plates with curvilinear fibres.

  17. Rationalization and Design of the Complementarity Determining Region Sequences in an Antibody-Antigen Recognition Interface

    Science.gov (United States)

    Chen, Ing-Chien; Lee, Yu-Ching; Chen, Jun-Bo; Tsai, Keng-Chang; Chen, Ching-Tai; Chang, Jeng-Yih; Yang, Ei-Wen; Hsu, Po-Chiang; Jian, Jhih-Wei; Hsu, Hung-Ju; Chang, Hung-Ju; Hsu, Wen-Lian; Huang, Kai-Fa; Ma, Alex Che; Yang, An-Suei

    2012-01-01

    Protein-protein interactions are critical determinants in biological systems. Engineered proteins binding to specific areas on protein surfaces could lead to therapeutics or diagnostics for treating diseases in humans. But designing epitope-specific protein-protein interactions with computational atomistic interaction free energy remains a difficult challenge. Here we show that, with the antibody-VEGF (vascular endothelial growth factor) interaction as a model system, the experimentally observed amino acid preferences in the antibody-antigen interface can be rationalized with 3-dimensional distributions of interacting atoms derived from the database of protein structures. Machine learning models established on the rationalization can be generalized to design amino acid preferences in antibody-antigen interfaces, for which the experimental validations are tractable with current high throughput synthetic antibody display technologies. Leave-one-out cross validation on the benchmark system yielded the accuracy, precision, recall (sensitivity) and specificity of the overall binary predictions to be 0.69, 0.45, 0.63, and 0.71 respectively, and the overall Matthews correlation coefficient of the 20 amino acid types in the 24 interface CDR positions was 0.312. The structure-based computational antibody design methodology was further tested with other antibodies binding to VEGF. The results indicate that the methodology could provide alternatives to the current antibody technologies based on animal immune systems in engineering therapeutic and diagnostic antibodies against predetermined antigen epitopes. PMID:22457753

  18. Sustainable Design of EPA's Campus in Research Triangle Park, NC—Environmental Performance Specifications in Construction Contracts—Section 01450 Sequence of Finishes Installation

    Science.gov (United States)

    Learn more about the special construction scheduling/sequencing requirements and procedures necessary to assure achievement of designed Indoor Air Quality (IAQ) levels for the completed project required by the EPA IAQ Program.

  19. General solution to inhomogeneous dephasing and smooth pulse dynamical decoupling

    Science.gov (United States)

    Zeng, Junkai; Deng, Xiu-Hao; Russo, Antonio; Barnes, Edwin

    2018-03-01

    In order to achieve the high-fidelity quantum control needed for a broad range of quantum information technologies, reducing the effects of noise and system inhomogeneities is an essential task. It is well known that a system can be decoupled from noise or made insensitive to inhomogeneous dephasing dynamically by using carefully designed pulse sequences based on square or delta-function waveforms such as Hahn spin echo or CPMG. However, such ideal pulses are often challenging to implement experimentally with high fidelity. Here, we uncover a new geometrical framework for visualizing all possible driving fields, which enables one to generate an unlimited number of smooth, experimentally feasible pulses that perform dynamical decoupling or dynamically corrected gates to arbitrarily high order. We demonstrate that this scheme can significantly enhance the fidelity of single-qubit operations in the presence of noise and when realistic limitations on pulse rise times and amplitudes are taken into account.

  20. Transformed composite sequences for improved qubit addressing

    Science.gov (United States)

    Merrill, J. True; Doret, S. Charles; Vittorini, Grahame; Addison, J. P.; Brown, Kenneth R.

    2014-10-01

    Selective laser addressing of a single atom or atomic ion qubit can be improved using narrow-band composite pulse sequences. We describe a Lie-algebraic technique to generalize known narrow-band sequences and introduce sequences related by dilation and rotation of sequence generators. Our method improves known narrow-band sequences by decreasing both the pulse time and the residual error. Finally, we experimentally demonstrate these composite sequences using 40Ca+ ions trapped in a surface-electrode ion trap.

  1. Proposal for the design of a small-angle neutron scattering facility at a pulsed neutron source

    International Nuclear Information System (INIS)

    Kley, W.

    1980-01-01

    The intensity-resolution-background considerations of an optimized small angle neutron scattering facility are reviewed for the special case of a pulsed neutron source. In the present proposal we conclude that for 'true elastic scattering experiments' filters can be used instead of expensive neutron guide tubes since low background conditions can be achieved by a combined action of filters as well as a proper time gating of the twodimensional detector. The impinging neutron beam is monochromatized by phasing a disk chopper to the neutron source pulses and in the scattered beam a second disk chopper is used to eliminate the inelastically scattered neutrons. Therefore, no time of fligh analysis is necessary for the scattered neutron intensity and true-elastic conditions are obtained by simply gating the two-dimensional detector. Considering a 4 m thick shield for the pulsed neutron source and choosing for optimum conditions a detector area element of (2.5 cm) 2 and a sample area of (1.25 cm) 2 , than for a minimum sample-detector-distance of 1.5 m, a maximum neutron source diameter of 6.67 cm is required in order to maintain always the optimum intensity- and resolution requirements

  2. MRI of normal pancreas : comparison of T2-weighted pulse sequences using turbo spin echo, turbo spin echo with fat suppression, HASTE and HASTE with fat suppression

    International Nuclear Information System (INIS)

    Lee, Kyoung Ho; Kim, Tae Kyoung; Jang, Hyun Jung; Kim, Young Hoon; Han, Sang Wook; Han, Joon Koo; Choi, Byung Ihn

    1998-01-01

    To compare various breath-hold T2 weighted sequences in imaging normal pancreas with a phased-array coil. HASTE showed higher SD/N than TSE or FS-HASTE (p<0.01). TSE was superior to TSE in the delineation of pancreatic duct (p<0.001). TSE showed more artifacts than FS-TSE (p<0.001): HASTE and FS-HASTE showed no artifact. TSE is better than HASTE for the delineation of pancreatic margin but HASTE shows less artifacts and a more conspicuous pancreatic duct. Fat suppression decreases artifacts but makes the pancreatic margin indistinct. (author). 19 refs., 1 tab., 2 figs

  3. Conceptual design for an accelerator system for a very high-intensity pulsed neutron source using a linear-induction accelerator

    International Nuclear Information System (INIS)

    Foss, M.H.

    1981-01-01

    Several accelerator-based intense neutron sources have been constructed or designed by various laboratories around the world. All of these facilities have a common scheme of a linac and synchrotron or accumulator ring, and the system produces the proton energy of 500 to 1000 MeV. The average beam currents range from a few mA to a few hundred mA. The protons are then used to generate high-flux neutrons by spallation out of heavy-metal targets. In a synchrotron system, the protons are already bunched, and thus the pulse rate of the neutron beam is that of the repetition rate of the synchrotron. For an accumulator system, the pulse rate is determined by the extraction repetition rate of the accumulator. We have conceptually designed a new system that uses a linear-induction accelerator which can be operated for an average beam current up to a few mA with a repetition rate up to 100 Hz. The details of the design will be given

  4. Testing of Air Pulse Agitators to Support Design of Savannah River Site Highly Radioactive Processing at the Salt Waste Processing Facility

    International Nuclear Information System (INIS)

    Gallego, R.M.; Stephens, A.B.; Wilkinson, R.H.; Dev, H.; Suggs, P.C.

    2006-01-01

    The Salt Waste Processing Facility (SWPF) is intended to concentrate the highly radioactive constituents from waste salt solutions at the Savannah River Site (SRS). Air Pulse Agitators (APAs) were selected for process mixing in high-radiation locations at the SWPF. This technology has the advantage of no moving parts within the hot cell, eliminating potential failure modes and the need for maintenance within the high-radiation environment. This paper describes the results of APA tests performed to gain operational and performance data for the SWPF design. (authors)

  5. Intracranial cerebrospinal fluid spaces imaging using a pulse-triggered three-dimensional turbo spin echo MR sequence with variable flip-angle distribution

    Energy Technology Data Exchange (ETDEWEB)

    Hodel, Jerome [Unite Analyse et Restauration du Mouvement, UMR-CNRS, 8005 LBM ParisTech Ensam, Paris (France); University Paris Est Creteil (UPEC), Creteil (France); Assistance Publique-Hopitaux de Paris, Paris (France); Hopital Henri Mondor, Department of Neuroradiology, Creteil (France); Hopital Henri Mondor, Creteil (France); Silvera, Jonathan [University Paris Est Creteil (UPEC), Creteil (France); Assistance Publique-Hopitaux de Paris, Paris (France); Hopital Henri Mondor, Department of Neuroradiology, Creteil (France); Bekaert, Olivier; Decq, Philippe [Unite Analyse et Restauration du Mouvement, UMR-CNRS, 8005 LBM ParisTech Ensam, Paris (France); University Paris Est Creteil (UPEC), Creteil (France); Assistance Publique-Hopitaux de Paris, Paris (France); Hopital Henri Mondor, Department of Neurosurgery, Creteil (France); Rahmouni, Alain [University Paris Est Creteil (UPEC), Creteil (France); Assistance Publique-Hopitaux de Paris, Paris (France); Hopital Henri Mondor, Department of Radiology, Creteil (France); Bastuji-Garin, Sylvie [University Paris Est Creteil (UPEC), Creteil (France); Assistance Publique-Hopitaux de Paris, Paris (France); Hopital Henri Mondor, Department of Public Health, Creteil (France); Vignaud, Alexandre [Siemens Healthcare, Saint Denis (France); Petit, Eric; Durning, Bruno [Laboratoire Images Signaux et Systemes Intelligents, UPEC, Creteil (France)

    2011-02-15

    To assess the three-dimensional turbo spin echo with variable flip-angle distribution magnetic resonance sequence (SPACE: Sampling Perfection with Application optimised Contrast using different flip-angle Evolution) for the imaging of intracranial cerebrospinal fluid (CSF) spaces. We prospectively investigated 18 healthy volunteers and 25 patients, 20 with communicating hydrocephalus (CH), five with non-communicating hydrocephalus (NCH), using the SPACE sequence at 1.5T. Volume rendering views of both intracranial and ventricular CSF were obtained for all patients and volunteers. The subarachnoid CSF distribution was qualitatively evaluated on volume rendering views using a four-point scale. The CSF volumes within total, ventricular and subarachnoid spaces were calculated as well as the ratio between ventricular and subarachnoid CSF volumes. Three different patterns of subarachnoid CSF distribution were observed. In healthy volunteers we found narrowed CSF spaces within the occipital aera. A diffuse narrowing of the subarachnoid CSF spaces was observed in patients with NCH whereas patients with CH exhibited narrowed CSF spaces within the high midline convexity. The ratios between ventricular and subarachnoid CSF volumes were significantly different among the volunteers, patients with CH and patients with NCH. The assessment of CSF spaces volume and distribution may help to characterise hydrocephalus. (orig.)

  6. Intracranial cerebrospinal fluid spaces imaging using a pulse-triggered three-dimensional turbo spin echo MR sequence with variable flip-angle distribution

    International Nuclear Information System (INIS)

    Hodel, Jerome; Silvera, Jonathan; Bekaert, Olivier; Decq, Philippe; Rahmouni, Alain; Bastuji-Garin, Sylvie; Vignaud, Alexandre; Petit, Eric; Durning, Bruno

    2011-01-01

    To assess the three-dimensional turbo spin echo with variable flip-angle distribution magnetic resonance sequence (SPACE: Sampling Perfection with Application optimised Contrast using different flip-angle Evolution) for the imaging of intracranial cerebrospinal fluid (CSF) spaces. We prospectively investigated 18 healthy volunteers and 25 patients, 20 with communicating hydrocephalus (CH), five with non-communicating hydrocephalus (NCH), using the SPACE sequence at 1.5T. Volume rendering views of both intracranial and ventricular CSF were obtained for all patients and volunteers. The subarachnoid CSF distribution was qualitatively evaluated on volume rendering views using a four-point scale. The CSF volumes within total, ventricular and subarachnoid spaces were calculated as well as the ratio between ventricular and subarachnoid CSF volumes. Three different patterns of subarachnoid CSF distribution were observed. In healthy volunteers we found narrowed CSF spaces within the occipital aera. A diffuse narrowing of the subarachnoid CSF spaces was observed in patients with NCH whereas patients with CH exhibited narrowed CSF spaces within the high midline convexity. The ratios between ventricular and subarachnoid CSF volumes were significantly different among the volunteers, patients with CH and patients with NCH. The assessment of CSF spaces volume and distribution may help to characterise hydrocephalus. (orig.)

  7. Rationally designed turn promoting mutation in the amyloid-β peptide sequence stabilizes oligomers in solution.

    Directory of Open Access Journals (Sweden)

    Jayakumar Rajadas

    Full Text Available Enhanced production of a 42-residue beta amyloid peptide (Aβ(42 in affected parts of the brain has been suggested to be the main causative factor for the development of Alzheimer's Disease (AD. The severity of the disease depends not only on the amount of the peptide but also its conformational transition leading to the formation of oligomeric amyloid-derived diffusible ligands (ADDLs in the brain of AD patients. Despite being significant to the understanding of AD mechanism, no atomic-resolution structures are available for these species due to the evanescent nature of ADDLs that hinders most structural biophysical investigations. Based on our molecular modeling and computational studies, we have designed Met35Nle and G37p mutations in the Aβ(42 peptide (Aβ(42Nle35p37 that appear to organize Aβ(42 into stable oligomers. 2D NMR on the Aβ(42Nle35p37 peptide revealed the occurrence of two β-turns in the V24-N27 and V36-V39 stretches that could be the possible cause for the oligomer stability. We did not observe corresponding NOEs for the V24-N27 turn in the Aβ(21-43Nle35p37 fragment suggesting the need for the longer length amyloid peptide to form the stable oligomer promoting conformation. Because of the presence of two turns in the mutant peptide which were absent in solid state NMR structures for the fibrils, we propose, fibril formation might be hindered. The biophysical information obtained in this work could aid in the development of structural models for toxic oligomer formation that could facilitate the development of therapeutic approaches to AD.

  8. Design and Simulation of Control Technique for Permanent Magnet Synchronous Motor Using Space Vector Pulse Width Modulation

    Science.gov (United States)

    Khan, Mansoor; Yong, Wang; Mustafa, Ehtasham

    2017-07-01

    After the rapid advancement in the field of power electronics devices and drives for last few decades, there are different kinds of Pulse Width Modulation techniques which have been brought to the market. The applications ranging from industrial appliances to military equipment including the home appliances. The vey common application for the PWM is three phase voltage source inverter, which is used to convert DC to AC in the homes to supply the power to the house in case electricity failure, usually named as Un-interrupted Power Supply. In this paper Space Vector Pulse Width Modulation techniques is discussed and analysed under the control technique named as Field Oriented Control. The working and implementation of this technique has been studied by implementing on the three phase bridge inverter. The technique is used to control the Permanente Magnet Synchronous Motor. The drive system is successfully implemented in MATLAB/Simulink using the mathematical equation and algorithm to achieve the satisfactory results. PI type of controller is used to tuned ers of the motothe parametr i.e. torque and current.

  9. Energy-efficient pulse-coupled synchronization strategy design for wireless sensor networks through reduced idle listening

    Science.gov (United States)

    Wang, Yongqiang; Núñez, Felipe; Doyle, Francis J.

    2013-01-01

    Synchronization is crucial to wireless sensor networks due to their decentralized structure. We propose an energy-efficient pulse-coupled synchronization strategy to achieve this goal. The basic idea is to reduce idle listening by intentionally introducing a large refractory period in the sensors’ cooperation. The large refractory period greatly reduces idle listening in each oscillation period, and is analytically proven to have no influence on the time to synchronization. Hence, it significantly reduces the total energy consumption in a synchronization process. A topology control approach tailored for pulse-coupled synchronization is given to guarantee a k-edge strongly connected interaction topology, which is tolerant to communication-link failures. The topology control approach is totally decentralized and needs no information exchange among sensors, and it is applicable to dynamic network topologies as well. This facilitates a completely decentralized implementation of the synchronization strategy. The strategy is applicable to mobile sensor networks, too. QualNet case studies confirm the effectiveness of the synchronization strategy. PMID:24307831

  10. Foundations of pulsed power technology

    CERN Document Server

    Lehr, Janet

    2018-01-01

    Pulsed power technologies could be an answer to many cutting-edge applications. The challenge is in how to develop this high-power/high-energy technology to fit current market demands of low-energy consuming applications. This book provides a comprehensive look at pulsed power technology and shows how it can be improved upon for the world of today and tomorrow. Foundations of Pulsed Power Technology focuses on the design and construction of the building blocks as well as their optimum assembly for synergetic high performance of the overall pulsed power system. Filled with numerous design examples throughout, the book offers chapter coverage on various subjects such as: Marx generators and Marx-like circuits; pulse transformers; pulse-forming lines; closing switches; opening switches; multi-gigawatt to multi-terawatt systems; energy storage in capacitor banks; electrical breakdown in gases; electrical breakdown in solids, liquids and vacuum; pulsed voltage and current measurements; electromagnetic interferen...

  11. Public acceptance of fusion energy and scientific feasibility of a fusion reactor. Design of inductively driven long pulse tokamak reactors: IDLT

    International Nuclear Information System (INIS)

    Ogawa, Yuichi

    1998-01-01

    Based on scientific data based adopted for designing ITER plasmas and on the advancement of fusion nuclear technology from the recent R and D program, the scientific feasibility of inductively-driven tokamak fusion reactors is studied. A low wall-loading DEMO fusion reactor is designed, which utilizes an austenitic stainless steel in conjunction with significant data bases and operating experiences, since we have given high priority to the early and reliable realization of a tokamak fusion plasma over the cost performance. Since the DEMO reactor with the relatively large volume (i.e., major radius of 10 m) is employed, plasma ignition is achievable with a low fusion power of 0.8 GW, and an operation period of 4 - 5 hours is available only with inductive current drive. Disadvantages of pulsed operation in commercial fusion reactors include fatigue in structural materials and the necessity of an energy storage system to compensate the electric power during the dwell time. To overcome these disadvantages, a pulse length is prolonged up to about 10 hours, resulting in the remarkable reduction of the total cycle number to 10 4 during the life of the fusion plant. (author)

  12. RF Pulsed Heating

    Energy Technology Data Exchange (ETDEWEB)

    Pritzkau, David P.

    2002-01-03

    RF pulsed heating is a process by which a metal is heated from magnetic fields on its surface due to high-power pulsed RF. When the thermal stresses induced are larger than the elastic limit, microcracks and surface roughening will occur due to cyclic fatigue. Pulsed heating limits the maximum magnetic field on the surface and through it the maximum achievable accelerating gradient in a normal conducting accelerator structure. An experiment using circularly cylindrical cavities operating in the TE{sub 011} mode at a resonant frequency of 11.424 GHz is designed to study pulsed heating on OFE copper, a material commonly used in normal conducting accelerator structures. The high-power pulsed RF is supplied by an X-band klystron capable of outputting 50 MW, 1.5 {micro}s pulses. The test pieces of the cavity are designed to be removable to allow testing of different materials with different surface preparations. A diagnostic tool is developed to measure the temperature rise in the cavity utilizing the dynamic Q change of the resonant mode due to heating. The diagnostic consists of simultaneously exciting a TE{sub 012} mode to steady-state in the cavity at 18 GHz and measuring the change in reflected power as the cavity is heated from high-power pulsed RF. Two experimental runs were completed. One run was executed at a calculated temperature rise of 120 K for 56 x 10{sup 6} pulses. The second run was executed at a calculated temperature rise of 82 K for 86 x 10{sup 6} pulses. Scanning electron microscope pictures show extensive damage occurring in the region of maximum temperature rise on the surface of the test pieces.

  13. Specific features of design and electric circuit of the pulse modulator of the amplification channel of second-section linear accelerator for a meson factory

    International Nuclear Information System (INIS)

    Dyukov, L.V.; Fedorov, A.F.; Terekhov, V.F.

    1977-01-01

    The circuit and design of a modulator at pulse power of 15 MW and average power of 300 kW, intended for supplying a klystron generator, are described. The modulator is designed for operating in a lengthy mode. The capacitance storage-former is made in the form of three parallel sections of artificial shaping lines in order to lower the specific loads on the elements of the shaping line and thyristors. The thyristor spark gaps are made in the form of a unified water-cooled assembly composed of 12 series TD-320 thyristors. An assessment of the modulator reliability has shown that the average time-to-fault is 800 hr. Modulator tests confirm that the choice of the circuit solution is correct. The modulator total efficiency equals to approximately 0.9

  14. Conceptual design of a 10^{13}-W pulsed-power accelerator for megajoule-class dynamic-material-physics experiments

    Directory of Open Access Journals (Sweden)

    W. A. Stygar

    2016-07-01

    Full Text Available We have developed a conceptual design of a next-generation pulsed-power accelerator that is optimized for megajoule-class dynamic-material-physics experiments. Sufficient electrical energy is delivered by the accelerator to a physics load to achieve—within centimeter-scale samples—material pressures as high as 1 TPa. The accelerator design is based on an architecture that is founded on three concepts: single-stage electrical-pulse compression, impedance matching, and transit-time-isolated drive circuits. The prime power source of the accelerator consists of 600 independent impedance-matched Marx generators. Each Marx comprises eight 5.8-GW bricks connected electrically in series, and generates a 100-ns 46-GW electrical-power pulse. A 450-ns-long water-insulated coaxial-transmission-line impedance transformer transports the power generated by each Marx to a system of twelve 2.5-m-radius water-insulated conical transmission lines. The conical lines are connected electrically in parallel at a 66-cm radius by a water-insulated 45-post sextuple-post-hole convolute. The convolute sums the electrical currents at the outputs of the conical lines, and delivers the combined current to a single solid-dielectric-insulated radial transmission line. The radial line in turn transmits the combined current to the load. Since much of the accelerator is water insulated, we refer to it as Neptune. Neptune is 40 m in diameter, stores 4.8 MJ of electrical energy in its Marx capacitors, and generates 28 TW of peak electrical power. Since the Marxes are transit-time isolated from each other for 900 ns, they can be triggered at different times to construct–over an interval as long as 1  μs–the specific load-current time history required for a given experiment. Neptune delivers 1 MJ and 20 MA in a 380-ns current pulse to an 18-mΩ load; hence Neptune is a megajoule-class 20-MA arbitrary waveform generator. Neptune will allow the international

  15. Design of a 9K illumina BeadChip for polar bears (Ursus maritimus) from RAD and transcriptome sequencing.

    Science.gov (United States)

    Malenfant, René M; Coltman, David W; Davis, Corey S

    2015-05-01

    Single-nucleotide polymorphisms (SNPs) offer numerous advantages over anonymous markers such as microsatellites, including improved estimation of population parameters, finer-scale resolution of population structure and more precise genomic dissection of quantitative traits. However, many SNPs are needed to equal the resolution of a single microsatellite, and reliable large-scale genotyping of SNPs remains a challenge in nonmodel species. Here, we document the creation of a 9K Illumina Infinium BeadChip for polar bears (Ursus maritimus), which will be used to investigate: (i) the fine-scale population structure among Canadian polar bears and (ii) the genomic architecture of phenotypic traits in the Western Hudson Bay subpopulation. To this end, we used restriction-site associated DNA (RAD) sequencing from 38 bears across their circumpolar range, as well as blood/fat transcriptome sequencing of 10 individuals from Western Hudson Bay. Six-thousand RAD SNPs and 3000 transcriptomic SNPs were selected for the chip, based primarily on genomic spacing and gene function respectively. Of the 9000 SNPs ordered from Illumina, 8042 were successfully printed, and - after genotyping 1450 polar bears - 5441 of these SNPs were found to be well clustered and polymorphic. Using this array, we show rapid linkage disequilibrium decay among polar bears, we demonstrate that in a subsample of 78 individuals, our SNPs detect known genetic structure more clearly than 24 microsatellites genotyped for the same individuals and that these results are not driven by the SNP ascertainment scheme. Here, we present one of the first large-scale genotyping resources designed for a threatened species. © 2014 John Wiley & Sons Ltd.

  16. An Automated Pipeline for Engineering Many-Enzyme Pathways: Computational Sequence Design, Pathway Expression-Flux Mapping, and Scalable Pathway Optimization.

    Science.gov (United States)

    Halper, Sean M; Cetnar, Daniel P; Salis, Howard M

    2018-01-01

    Engineering many-enzyme metabolic pathways suffers from the design curse of dimensionality. There are an astronomical number of synonymous DNA sequence choices, though relatively few will express an evolutionary robust, maximally productive pathway without metabolic bottlenecks. To solve this challenge, we have developed an integrated, automated computational-experimental pipeline that identifies a pathway's optimal DNA sequence without high-throughput screening or many cycles of design-build-test. The first step applies our Operon Calculator algorithm to design a host-specific evolutionary robust bacterial operon sequence with maximally tunable enzyme expression levels. The second step applies our RBS Library Calculator algorithm to systematically vary enzyme expression levels with the smallest-sized library. After characterizing a small number of constructed pathway variants, measurements are supplied to our Pathway Map Calculator algorithm, which then parameterizes a kinetic metabolic model that ultimately predicts the pathway's optimal enzyme expression levels and DNA sequences. Altogether, our algorithms provide the ability to efficiently map the pathway's sequence-expression-activity space and predict DNA sequences with desired metabolic fluxes. Here, we provide a step-by-step guide to applying the Pathway Optimization Pipeline on a desired multi-enzyme pathway in a bacterial host.

  17. Design and array signal suggestion of array type pulsed eddy current probe for health monitoring of metal tubes

    Energy Technology Data Exchange (ETDEWEB)

    Shin, Young Kil [Dept. of Electrical Engineering, Kunsan National University, Kunsan (Korea, Republic of)

    2015-10-15

    An array type probe for monitoring metal tubes is proposed in this paper which utilizes peak value and peak time of a pulsed eddy current(PEC) signal. The probe consists of an array of encircling coils along a tube and the outside of coils is shielded by ferrite to prevent source magnetic fields from directly affecting sensor signals since it is the magnetic fields produced by eddy currents that reflect the condition of metal tubes. The positions of both exciter and sensor coils are consecutively moved automatically so that manual scanning is not necessary. At one position of send-receive coils, peak value and peak time are extracted from a sensor PEC signal and these data are accumulated for all positions to form an array type peak value signal and an array type peak time signal. Numerical simulation was performed using the backward difference method in time and the finite element method for spatial analysis. Simulation results showed that peak value increases and the peak appears earlier as the defect depth or length increases. The proposed array signals are shown to be excellent in reflecting the defect location as well as variations of defect depth and length within the array probe.

  18. Pulsed high-peak-power and single-frequency fibre laser design for LIDAR aircraft safety application

    Science.gov (United States)

    Liégeois, Flavien; Vercambre, Clément; Hernandez, Yves; Salhi, Mohamed; Giannone, Domenico

    2006-09-01

    Laser wind velocimeters work by monitoring the Doppler shift induced on the backscattered light by aerosols that are present in the air. Recently there has been a growing interest in the scientific community for developing systems operating at wavelengths near 1.5 μm and based on all-fibre lasers configuration. In this paper, we propose a new all-fibre laser source that is suitable for Doppler velocimetry in aircraft safety applications. The all-fibre laser has been specifically conceived for aircraft safety application. Our prototype has a conveniently narrow linewidth (9 kHz) and is modulated and amplified through an all fibre Master Oscillator Power Amplifier (MOPA) configuration. According to the measurements, we performed the final characteristics of the laser consist in a maximum peak power of 2.7 kW and an energy of 27 μJ energy per pulses of 10 ns at 30 kHz repetition rate. The only limiting factor of these performances is the Stimulated Brillouin Scattering.

  19. Design and analysis of an integrated pulse modulated s-band power amplifier in gallium nitride process

    Energy Technology Data Exchange (ETDEWEB)

    Sedlock, Steve [Kansas State Univ., Manhattan, KS (United States)

    2012-01-01

    The design of power amplifiers in any semi-conductor process is not a trivia exercise and it is often encountered that the simulated solution is qualitatively different than the results obtained. Phenomena such as oscillation occurring either in-band or out of band and sometimes at subharmonic intervals, continuous spectrum noticed in some frequency bands, often referred to as chaos, and jumps and hysteresis effects can all be encountered and render a design useless. All of these problems might have been identified through a more rigorous approach to stability analysis. Designing for stability is probably the one area of amplifier design that receives the least amount of attention but incurs the most catastrophic of effects if it is not performed properly. Other parameters such as gain, power output, frequency response and even matching may suitable mitigation paths. But the lack of stability in an amplifier has no mitigating path. In addition to of loss of the design completely there are the increased production cycle costs, costs involved with investigating and resolving the problem and the costs involved with schedule slips or delays resulting from it. The Linville or Rollett stability criteria that many microwave engineers follow and rely exclusively on is not sufficient by itself to ensure a stable and robust design. It will be shown that the universal belief that unconditional stability is obtained through an analysis of the scattering matrix S to determine if 1 and |{Delta}{sub S}| < 1 is only part of the procedure and other tools must be used to validate the criteria. The research shown contributes to the state of the art by developing a more thorough stability design technique for designing amplifiers of any class, whether that be current mode or switch mode, than is currently undertaken with the goal of obtaining first pass design success.

  20. Design of a fiber optic multi-tapped computer bus for a pulsed power control system application

    International Nuclear Information System (INIS)

    Gritton, D.G.; Berkbigler, L.W.; Oicles, J.A.

    1979-01-01

    Control system techniques developed and proven on the Shiva laser have been extended to incorporate new electronic and electo-optic devices as well as conform to unique operational requirements of the 300 terawatt Nova laser system. This paper describes one segment of the control system being designed for the Nova laser currently under design/construction at Lawrence Livermore Laboratory. The specific segment covered is the control system bus structure responsible for power conditioning and real-time control functions

  1. Design of Pulse Oximeter with WiFi Connectivity and Interoperability with Standard HL7 and IEEE 11073-10404:2008

    Directory of Open Access Journals (Sweden)

    Víctor Ochoa

    2014-12-01

    Full Text Available Given that health is so relevant for global productivity and competitiveness, and that the Information and Communications Technology (ICTs play an important role in all of the productivity factors, this work makes use of the ICTs in health matters proposing the to use a WiFi oximeter. This article describes the operating principles of a Pulse Oximeter (PO which is an opto-electronic non-invasive medical instrument capable of measuring changes in heart rate (HR and SpO2 at the fingertip and its upgrade to the standards; HL7 and IEEE 11073-10404:2008, its design, and its validation against the three existing devices. Variables (SpO2%, Ppm and Temperature were compared, and its performance and impact were discussed the addition of the WiFi technology allows a better communication between devices, causing a greater impact in global competiveness.

  2. Design and performance of the 10-kV, 5-MA pulsed-power system for the FRX-C compression experiment

    International Nuclear Information System (INIS)

    Rej, D.J.; Barnes, G.A.; Gribble, R.J.; Hinckley, J.E.; Kreider, T.W.; Waganaar, W.J.

    1989-05-01

    The design and performance of the pulsed-power system for the FRX-C compact toroid compression heating experiment are reviewed. Two inductively-isolated, 10-kV capacitor banks (total energy = 1.5 MJ) are discharged through a common, low-inductance load. The 5-MA currents are switched and crowbarred with parallel arrays of size-D ignitrons. Power supplies are constructed in simple 25 and 50 kJ modules, each capable of supplying 100 kA at 10 kV. Non-negligible source inductance and the addition of high-power resistors maintain module isolation and protect the system during fault modes. 21 refs., 31 figs

  3. Evaluation of Bioinformatics Approaches for Next-Generation Sequencing Analysis of microRNAs with a Toxicogenomics Study Design

    Directory of Open Access Journals (Sweden)

    Halil Bisgin

    2018-02-01

    Full Text Available MicroRNAs (miRNAs are key post-transcriptional regulators that affect protein translation by targeting mRNAs. Their role in disease etiology and toxicity are well recognized. Given the rapid advancement of next-generation sequencing techniques, miRNA profiling has been increasingly conducted with RNA-seq, namely miRNA-seq. Analysis of miRNA-seq data requires several steps: (1 mapping the reads to miRBase, (2 considering mismatches during the hairpin alignment (windowing, and (3 counting the reads (quantification. The choice made in each step with respect to the parameter settings could affect miRNA quantification, differentially expressed miRNAs (DEMs detection and novel miRNA identification. Furthermore, these parameters do not act in isolation and their joint effects impact miRNA-seq results and interpretation. In toxicogenomics, the variation associated with parameter setting should not overpower the treatment effect (such as the dose/time-dependent effect. In this study, four commonly used miRNA-seq analysis tools (i.e., miRDeep2, miRExpress, miRNAkey, sRNAbench were comparatively evaluated with a standard toxicogenomics study design. We tested 30 different parameter settings on miRNA-seq data generated from thioacetamide-treated rat liver samples for three dose levels across four time points, followed by four normalization options. Because both miRExpress and miRNAkey yielded larger variation than that of the treatment effects across multiple parameter settings, our analyses mainly focused on the side-by-side comparison between miRDeep2 and sRNAbench. While the number of miRNAs detected by miRDeep2 was almost the subset of those detected by sRNAbench, the number of DEMs identified by both tools was comparable under the same parameter settings and normalization method. Change in the number of nucleotides out of the mature sequence in the hairpin alignment (window option yielded the largest variation for miRNA quantification and DEMs

  4. Preconceptual design of a Long-Pulse Spallation Source (LPSS) at the LANSCE Facility: Target system, facility, and material handling considerations

    International Nuclear Information System (INIS)

    Sommer, W.F.

    1995-12-01

    This report provides a summary of a preconceptual design study for the proposed Long-Pulse Spallation. Source (LPSS) at the Los Alamos Neutron Science Center (LANSCE). The LPSS will use a 0.8-MW proton beam to produce neutrons from a tungsten target. This study focuses on the design of the target station and changes to the existing building that would be made to accommodate the LPSS. The LPSS will provide fifteen flight paths to neutron scattering instruments. In addition, options for generating ultracold neutrons, pions, and muons will be available. Flight-energy, forward-scattered neutrons on the downstream side of the target will also be available for autoradiography studies. A Target Test Bed (TTB) is also proposed for full-beam tests of component materials and advanced spallation neutron sources. The design allows for separation of the experiment hall from the beam line, target, and flight paths. The target and moderator systems and the systems/components to be tested in the TTB will be emplaced and removed separately by remotely operated, shielded equipment. Irradiated materials will be transported to a hot cell adjacent to the target chamber for testing by remotely operated instruments. These tests will provide information about how materials properties are affected by proton and neutron beams

  5. Development of the pulse transformer for NLC klystron pulse modulator

    International Nuclear Information System (INIS)

    Akemoto, M.; Gold, S.; Koontz, R.; Krasnykh, A.

    1997-05-01

    We have studied a conventional pulse transformer for the NLC klystron pulse modulator. The transformer has been analyzed using a simplified lumped circuit model. It is found that a fast rise time requires low leakage inductance and low distributed capacitance and can be realized by reducing the number of secondary turns, but it produces larger pulse droop and core size. After making a tradeoff among these parameters carefully, a conventional pulse transformer with a rise time of 250ns and pulse droop of 3.6% has been designed and built. The transmission characteristics and pulse time-response were measured. The data were compared with the model. The agreement with the model was good when the measured values were used in the model simulation. The results of the high voltage tests are also presented

  6. Pulse transformer R and D for NLC klystron pulse modulator

    International Nuclear Information System (INIS)

    Akemoto, M.; Gold, S.; Krasnykh, A.; Koontz, R.

    1997-07-01

    The authors have studied a conventional pulse transformer for the NLC klystron pulse modulator. The transformer has been analyzed using a simplified lumped circuit model. It is found that a fast rise time requires low leakage inductance and low distributed capacitance and can be realized by reducing the number of secondary turns, but it produces larger pulse droop and requires a larger core size. After making a tradeoff among these parameters carefully, a conventional pulse transformer with a rise time of 250ns and a pulse droop of 3.6% has been designed and built. The transmission characteristics and pulse time-response were measured. The data were compared with the model. The agreement with the model was good when the measured values were used in the model simulation. The results of the high voltage tests using a klystron load are also presented

  7. Controlled generation of a single Trichel pulse and a series of single Trichel pulses in air

    Science.gov (United States)

    Mizeraczyk, Jerzy; Berendt, Artur; Akishev, Yuri

    2018-04-01

    In this paper, a simple method for the controlled generation of a single Trichel pulse or a series of single Trichel pulses of a regulated repetition frequency in air is proposed. The concept of triggering a single Trichel pulse or a series of such pulses is based on the precise controlling the voltage inception of the negative corona, which can be accomplished through the use of a ramp voltage pulse or a series of such pulses with properly chosen ramp voltage pulse parameters (rise and fall times, and ramp voltage pulse repetition frequency). The proposal has been tested in experiments using a needle-to-plate electrode arrangement in air, and reproducible Trichel pulses (single or in a series) were obtained by triggering them with an appropriately designed voltage waveform. The proposed method and results obtained have been qualitatively analysed. The analysis provides guidance for designing the voltage ramp pulse in respect of the generation of a single Trichel pulse or a series of single Trichel pulses. The controlled generation of a single Trichel pulse or a series of such pulses would be a helpful research tool for the refined studies of the fundamental processes in a negative corona discharge in a single- (air is an example) and multi-phase gaseous fluids. The controlled generation of a single Trichel pulse or a series of Trichel pulses can also be attractive for those corona treatments which need manipulation of the electric charge and heat portions delivered by the Trichel pulses to the object.

  8. Fast AD conversion of pulse sequences

    International Nuclear Information System (INIS)

    Centro, S.; Giorgi, M. de; Pascoli, D.

    1977-01-01

    A system is described for integration and storage of charge signals in analog form. Up to 12 signals can be stored per channel and after acquisition they are read and converted to digital. The basic unit, ABM, is a single width CAMAC module that allocates 8 channels. (Auth.)

  9. A SiGe Quadrature Pulse Modulator for Superconducting Qubit State Manipulation

    Science.gov (United States)

    Kwende, Randy; Bardin, Joseph

    Manipulation of the quantum states of microwave superconducting qubits typically requires the generation of coherent modulated microwave pulses. While many off-the-shelf instruments are capable of generating such pulses, a more integrated approach is likely required if fault-tolerant quantum computing architectures are to be implemented. In this work, we present progress towards a pulse generator specifically designed to drive superconducing qubits. The device is implemented in a commercial silicon process and has been designed with energy-efficiency and scalability in mind. Pulse generation is carried out using a unique approach in which modulation is applied directly to the in-phase and quadrature components of a carrier signal in the 1-10 GHz frequency range through a unique digital-analog conversion process designed specifically for this application. The prototype pulse generator can be digitally programmed and supports sequencing of pulses with independent amplitude and phase waveforms. These amplitude and phase waveforms can be digitally programmed through a serial programming interface. Detailed performance of the pulse generator at room temperature and 4 K will be presented.

  10. Pulse plating

    CERN Document Server

    Hansal, Wolfgang E G; Green, Todd; Leisner, Peter; Reichenbach, Andreas

    2012-01-01

    The electrodeposition of metals using pulsed current has achieved practical importance in recent years. Although it has long been known that changes in potential, with or without polarity reversal, can significantly affect the deposition process, the practical application of this has been slow to be adopted. This can largely be explained in terms of the complex relationship between the current regime and its effect on the electrodeposition process. In order to harness these effects, an understanding of the anodic and cathodic electrochemical processes is necessary, together with the effects of polarity reversal and the rate of such reversals. In this new monograph, the basics of metal electrodeposition from solution are laid out in great detail in seven distinct chapters. With this knowledge, the reader is able to predict how a given pulse train profile can be adopted to achieve a desired outcome. Equally important is the choice of a suitable rectifier and the ancillary control circuits to enable pulse platin...

  11. A Quantitative Analysis of Pulsed Signals Emitted by Wild Bottlenose Dolphins.

    Directory of Open Access Journals (Sweden)

    Ana Rita Luís

    Full Text Available Common bottlenose dolphins (Tursiops truncatus, produce a wide variety of vocal emissions for communication and echolocation, of which the pulsed repertoire has been the most difficult to categorize. Packets of high repetition, broadband pulses are still largely reported under a general designation of burst-pulses, and traditional attempts to classify these emissions rely mainly in their aural characteristics and in graphical aspects of spectrograms. Here, we present a quantitative analysis of pulsed signals emitted by wild bottlenose dolphins, in the Sado estuary, Portugal (2011-2014, and test the reliability of a traditional classification approach. Acoustic parameters (minimum frequency, maximum frequency, peak frequency, duration, repetition rate and inter-click-interval were extracted from 930 pulsed signals, previously categorized using a traditional approach. Discriminant function analysis revealed a high reliability of the traditional classification approach (93.5% of pulsed signals were consistently assigned to their aurally based categories. According to the discriminant function analysis (Wilk's Λ = 0.11, F3, 2.41 = 282.75, P < 0.001, repetition rate is the feature that best enables the discrimination of different pulsed signals (structure coefficient = 0.98. Classification using hierarchical cluster analysis led to a similar categorization pattern: two main signal types with distinct magnitudes of repetition rate were clustered into five groups. The pulsed signals, here described, present significant differences in their time-frequency features, especially repetition rate (P < 0.001, inter-click-interval (P < 0.001 and duration (P < 0.001. We document the occurrence of a distinct signal type-short burst-pulses, and highlight the existence of a diverse repertoire of pulsed vocalizations emitted in graded sequences. The use of quantitative analysis of pulsed signals is essential to improve classifications and to better assess the

  12. Design and performance of high-pressure PLANET beamline at pulsed neutron source at J-PARC

    Energy Technology Data Exchange (ETDEWEB)

    Hattori, T.; Sano-Furukawa, A. [J-PARC Center, Japan Atomic Energy Agency, Tokai, Naka, Ibaraki 319-1195 (Japan); Quantum Beam Science Center, Japan Atomic Energy Agency, Tokai, Naka, Ibaraki 319-1195 (Japan); Arima, H. [Institute for Materials Research, Tohoku University, Sendai 980-8577 (Japan); Komatsu, K. [Geochemical Research Center, Graduate School of Science, The University of Tokyo, Tokyo 113-0033 (Japan); Yamada, A. [University of Shiga Prefecture, Shiga 522-8533 (Japan); Inamura, Y.; Nakatani, T. [J-PARC Center, Japan Atomic Energy Agency, Tokai, Naka, Ibaraki 319-1195 (Japan); Seto, Y. [Graduate School of Science, Kobe University, Kobe 657-8501 (Japan); Nagai, T. [Faculty of Science, Hokkaido University, Sapporo 060-0810 (Japan); Utsumi, W. [Quantum Beam Science Center, Japan Atomic Energy Agency, Tokai, Naka, Ibaraki 319-1195 (Japan); Iitaka, T. [Computational Astrophysics Laboratory, RIKEN, Saitama 351-0198 (Japan); Kagi, H. [Geochemical Research Center, Graduate School of Science, The University of Tokyo, Tokyo 113-0033 (Japan); Katayama, Y. [Quantum Beam Science Center, Japan Atomic Energy Agency, Tokai, Naka, Ibaraki 319-1195 (Japan); Inoue, T. [Geodynamic Research Center, Ehime University, Matsuyama 790-8577 (Japan); Otomo, T. [J-PARC Center, Japan Atomic Energy Agency, Tokai, Naka, Ibaraki 319-1195 (Japan); Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 205-001 (Japan); Suzuya, K. [J-PARC Center, Japan Atomic Energy Agency, Tokai, Naka, Ibaraki 319-1195 (Japan); Kamiyama, T. [J-PARC Center, Japan Atomic Energy Agency, Tokai, Naka, Ibaraki 319-1195 (Japan); Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 205-001 (Japan); Arai, M. [J-PARC Center, Japan Atomic Energy Agency, Tokai, Naka, Ibaraki 319-1195 (Japan); Yagi, T. [Geochemical Research Center, Graduate School of Science, The University of Tokyo, Tokyo 113-0033 (Japan)

    2015-04-21

    PLANET is a time-of-flight (ToF) neutron beamline dedicated to high-pressure and high-temperature experiments. The large six-axis multi-anvil high-pressure press designed for ToF neutron diffraction experiments enables routine data collection at high pressures and high temperatures up to 10 GPa and 2000 K, respectively. To obtain clean data, the beamline is equipped with the incident slits and receiving collimators to eliminate parasitic scattering from the high-pressure cell assembly. The high performance of the diffractometer for the resolution (Δd/d~0.6%) and the accessible d-spacing range (0.2–8.4 Å) together with low-parasitic scattering characteristics enables precise structure determination of crystals and liquids under high pressure and temperature conditions.

  13. Design and performance of high-pressure PLANET beamline at pulsed neutron source at J-PARC

    International Nuclear Information System (INIS)

    Hattori, T.; Sano-Furukawa, A.; Arima, H.; Komatsu, K.; Yamada, A.; Inamura, Y.; Nakatani, T.; Seto, Y.; Nagai, T.; Utsumi, W.; Iitaka, T.; Kagi, H.; Katayama, Y.; Inoue, T.; Otomo, T.; Suzuya, K.; Kamiyama, T.; Arai, M.; Yagi, T.

    2015-01-01

    PLANET is a time-of-flight (ToF) neutron beamline dedicated to high-pressure and high-temperature experiments. The large six-axis multi-anvil high-pressure press designed for ToF neutron diffraction experiments enables routine data collection at high pressures and high temperatures up to 10 GPa and 2000 K, respectively. To obtain clean data, the beamline is equipped with the incident slits and receiving collimators to eliminate parasitic scattering from the high-pressure cell assembly. The high performance of the diffractometer for the resolution (Δd/d~0.6%) and the accessible d-spacing range (0.2–8.4 Å) together with low-parasitic scattering characteristics enables precise structure determination of crystals and liquids under high pressure and temperature conditions

  14. Pulse Doppler radar

    CERN Document Server

    Alabaster, Clive

    2012-01-01

    This book is a practitioner's guide to all aspects of pulse Doppler radar. It concentrates on airborne military radar systems since they are the most used, most complex, and most interesting of the pulse Doppler radars; however, ground-based and non-military systems are also included. It covers the fundamental science, signal processing, hardware issues, systems design and case studies of typical systems. It will be a useful resource for engineers of all types (hardware, software and systems), academics, post-graduate students, scientists in radar and radar electronic warfare sectors and milit

  15. Pulse Synchronization System (PSS)

    International Nuclear Information System (INIS)

    1977-06-01

    This document is intended to serve as an operations manual, as well as a documentation of the backup analyses pertinent to the design as delivered. A history of earlier unsuccessful versions of the Pulse Synchronization System (PSS) is not included. The function of the PSS is to synchronize the time of arrival at the fusion target of laser pulses that are propagated through the 20 amplifier chains of the SHIVA laser. The positional accuracy requirement is +-1.5 mm (+-5 psec), and is obtained by the PSS with a wide margin factor

  16. Pulse-shaping strategies in short-pulse fiber amplifiers

    Energy Technology Data Exchange (ETDEWEB)

    Schimpf, Damian Nikolaus

    2010-02-09

    Ultrashort pulse lasers are an important tool in scientific and industrial applications. However, many applications are demanding higher average powers from these ultrashort pulse sources. This can be achieved by combining direct diode pumping with novel gain media designs. In particular, ultrashort pulse fiber lasers are now delivering average powers in the kW range. However, the design of fiber lasers, producing pulses with high peak-powers, is challenging due to the impact of nonlinear effects. To significantly reduce these detrimental effects in ultrashort pulse fiber amplifers, the combination of chirped pulse amplification (CPA) and large mode area fibers is employed. Using these methods, the pulse energy of fiber lasers has been steadily increasing for the past few years. Recently, a fiber-based CPA-system has been demonstrated which produces pulse energies of around 1 mJ. However, both the stretching and the enlargement of the mode area are limited, and therefore, the impact of nonlinearity is still noticed in systems employing such devices. The aim of this thesis is the analysis of CPA-systems operated beyond the conventional nonlinear limit, which corresponds to accumulated nonlinear phase-shifts around 1 rad. This includes a detailed discussion of the influence of the nonlinear effect self-phase modulation on the output pulse of CPA-systems. An analytical model is presented. Emphasis is placed on the design of novel concepts to control the impact of self-phase modulation. Pulse-shaping is regarded as a powerful tool to accomplish this goal. Novel methods to control the impact of SPM are experimentally demonstrated. The design of these concepts is based on the theoretical findings. Both amplitude- and phase-shaping are studied. Model-based phase-shaping is implemented in a state-of-the-art fiber CPA-system. The influence of the polarization state is also highlighted. Additionally, existing techniques and recent advances are put into context. (orig.)

  17. Pulse-shaping strategies in short-pulse fiber amplifiers

    International Nuclear Information System (INIS)

    Schimpf, Damian Nikolaus

    2010-01-01

    Ultrashort pulse lasers are an important tool in scientific and industrial applications. However, many applications are demanding higher average powers from these ultrashort pulse sources. This can be achieved by combining direct diode pumping with novel gain media designs. In particular, ultrashort pulse fiber lasers are now delivering average powers in the kW range. However, the design of fiber lasers, producing pulses with high peak-powers, is challenging due to the impact of nonlinear effects. To significantly reduce these detrimental effects in ultrashort pulse fiber amplifers, the combination of chirped pulse amplification (CPA) and large mode area fibers is employed. Using these methods, the pulse energy of fiber lasers has been steadily increasing for the past few years. Recently, a fiber-based CPA-system has been demonstrated which produces pulse energies of around 1 mJ. However, both the stretching and the enlargement of the mode area are limited, and therefore, the impact of nonlinearity is still noticed in systems employing such devices. The aim of this thesis is the analysis of CPA-systems operated beyond the conventional nonlinear limit, which corresponds to accumulated nonlinear phase-shifts around 1 rad. This includes a detailed discussion of the influence of the nonlinear effect self-phase modulation on the output pulse of CPA-systems. An analytical model is presented. Emphasis is placed on the design of novel concepts to control the impact of self-phase modulation. Pulse-shaping is regarded as a powerful tool to accomplish this goal. Novel methods to control the impact of SPM are experimentally demonstrated. The design of these concepts is based on the theoretical findings. Both amplitude- and phase-shaping are studied. Model-based phase-shaping is implemented in a state-of-the-art fiber CPA-system. The influence of the polarization state is also highlighted. Additionally, existing techniques and recent advances are put into context. (orig.)

  18. An Integrated Mixed Methods Research Design: Example of the Project Foreign Language Learning Strategies and Achievement: Analysis of Strategy Clusters and Sequences

    OpenAIRE

    Vlčková Kateřina

    2014-01-01

    The presentation focused on an so called integrated mixed method research design example on a basis of a Czech Science Foundation Project Nr. GAP407/12/0432 "Foreign Language Learning Strategies and Achievement: Analysis of Strategy Clusters and Sequences". All main integrated parts of the mixed methods research design were discussed: the aim, theoretical framework, research question, methods and validity threats. Prezentace se zaměřovala na tzv. integrovaný vícemetodový výzkumný design na...

  19. Two‐phase designs for joint quantitative‐trait‐dependent and genotype‐dependent sampling in post‐GWAS regional sequencing

    Science.gov (United States)

    Espin‐Garcia, Osvaldo; Craiu, Radu V.

    2017-01-01

    ABSTRACT We evaluate two‐phase designs to follow‐up findings from genome‐wide association study (GWAS) when the cost of regional sequencing in the entire cohort is prohibitive. We develop novel expectation‐maximization‐based inference under a semiparametric maximum likelihood formulation tailored for post‐GWAS inference. A GWAS‐SNP (where SNP is single nucleotide polymorphism) serves as a surrogate covariate in inferring association between a sequence variant and a normally distributed quantitative trait (QT). We assess test validity and quantify efficiency and power of joint QT‐SNP‐dependent sampling and analysis under alternative sample allocations by simulations. Joint allocation balanced on SNP genotype and extreme‐QT strata yields significant power improvements compared to marginal QT‐ or SNP‐based allocations. We illustrate the proposed method and evaluate the sensitivity of sample allocation to sampling variation using data from a sequencing study of systolic blood pressure. PMID:29239496

  20. Pulsed ventilation in mines. II

    Energy Technology Data Exchange (ETDEWEB)

    Krause, D

    1975-06-01

    Using test results, an attempt is made to determine the form of the free jet and to derive design data for pulsed fans. The most suitable placing of these fans for the ventilation of headings is discussed.