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Sample records for pseudoacacia var monophylla

  1. Toxic effect of Atalantia monophylla essential oil on Callosobruchus maculatus and Sitophilus oryzae.

    Science.gov (United States)

    Nattudurai, Gopal; Baskar, Kathirvelu; Paulraj, Micheal Gabrial; Islam, Villianur Ibrahim Hairul; Ignacimuthu, Savarimuthu; Duraipandiyan, Veeramuthu

    2017-01-01

    The hydrodistillated essential oil of Atalantia monophylla was subjected to GC-MS. Forty compounds were presented in the essential oil. Eugenol (19.76 %), sabinene (19.57 %), 1,2-dimethoxy-4-(2-methoxyethenyl) benzene (9.84 %), beta-asarone (7.02 %) and methyl eugenol (5.52 %) were found the predominant compounds. The oil was tested for fumigant toxicity and repellent activity against Callosobruchus maculatus and Sitophilus oryzae. The development stage of C. maculatus fecundity, adult emergence and also ovicidal activities were studied by the treatment of A. monophylla oil. The oil exhibited considerable fumigation toxicity (70.22 %), repellent activity (85.24 %) and ovicidal activity (100 %) against C. maculatus. The oil significantly reduced the protein, esterase, acetylcholinesterase and glutathione S-transferase on C. maculatus and S. oryzae. It can be considered that A. monophylla has a potential insecticide against stored product pests.

  2. Antigenotoxic and apoptotic activities of essential oil of Atalantia monophylla Correa.

    Science.gov (United States)

    Thirugnanasampandan, Ramaraj; Ramya, Gunasekar; Gogulramnath, Madusudhanan

    2016-01-01

    To study antigenotoxic and apoptotic activities of hydrodistilled essential oil from the leaves of Atalantia monophylla Correa. Antigenotoxic activity of essential oil was tested against hydrogen peroxide (100 μM)-induced deoxyribonucleic acid (DNA) damage in 3T3-L1 cells. Cervical cancer cell (HeLa) growth inhibitory effect of essential oil was measured by 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazoliumbromide assay. Annexin V-fluorescein isothiocyanate/propidium iodide (FITC/PI), Hoechst 33258, and acridine orange/ethidium bromide (AO/EtBr) staining techniques were used to identify apoptosis. DNA protecting the activity of A. monophylla essential oil was high at 125 μg/mL. HeLa cell growth was inhibited dose-dependently and inhibitory concentration 50% was calculated as 43.08 ± 0.02 μg/mL. Annexin V-FITC/PI double staining showed membrane breakage and nuclei staining. Further, Hoechst 33258 and AO/EtBr stain also confirmed the apoptosis in essential oil-treated HeLa cells. The results obtained suggest that A. monophylla essential oil is a promising natural agent which may be used in preparation of herbal medicine to treat cancer and other diseases.

  3. Robinia pseudoacacia groeit het best op schrale, droge grond

    NARCIS (Netherlands)

    Schalk, G.; Sluis, van der B.J.; Hiemstra, J.A.

    2006-01-01

    Robinia pseudoacacia staat bekend als een gewaardeerde laan- en straatboom. Welke specifieke eigenschappen heeft deze boom? Uit het gebruikswaardeonderzoek laanbomen blijkt onder meer dat de schijnacacia een geschikte boom is voor schrale en lichte gronden, en verharding verdraagt.

  4. Microsatellite primers in the foundation tree species Pinus edulis and P. monophylla (Pinaceae)1

    Science.gov (United States)

    Krohn, Andrew L.; Flores-Rentería, Lluvia; Gehring, Catherine A.

    2013-01-01

    • Premise of the study: Microsatellite primers were developed in the foundational tree species Pinus edulis to investigate population differentiation of P. edulis and hybridization among closely related species. • Methods and Results: Using a hybridization protocol, primer sets for 11 microsatellite loci were developed using megagametophyte tissue from P. edulis and scored for polymorphism in three populations of P. edulis and a single P. monophylla population. The primers amplified simple and compound di-, tri-, and pentanucleotide repeats with two to 18 alleles per locus. • Conclusions: These results demonstrate the utility of the described primers for studies of population differentiation within and among P. edulis populations as well as across putative hybrid zones where P. edulis may coexist with sister species. PMID:25202571

  5. Microsatellite Primers in the Foundation Tree Species Pinus edulis and P. monophylla (Pinaceae

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    Andrew L. Krohn

    2013-07-01

    Full Text Available Premise of the study: Microsatellite primers were developed in the foundational tree species Pinus edulis to investigate population differentiation of P. edulis and hybridization among closely related species. Methods and Results: Using a hybridization protocol, primer sets for 11 microsatellite loci were developed using megagametophyte tissue from P. edulis and scored for polymorphism in three populations of P. edulis and a single P. monophylla population. The primers amplified simple and compound di-, tri-, and pentanucleotide repeats with two to 18 alleles per locus. Conclusions: These results demonstrate the utility of the described primers for studies of population differentiation within and among P. edulis populations as well as across putative hybrid zones where P. edulis may coexist with sister species.

  6. Actividad antifúngica de extractos orgánicos del árbol Fagara monophylla (Rutaceae en Venezuela

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    Yrma Gómez

    2007-12-01

    Full Text Available Fagara monophylla está distribuida en América Tropical. El género Fagara tiene diversidad de compuestos alcaloides con propiedades antibacterianas; sin embargo existe escasa información acerca de su actividad antifúngica. Evaluamos extractos de F. monophylla in vitro con los hongos Aspergillus terreus, A. flavus, Penicillium digitatum, P. citrinum, P. funiculosum, Paecilomyces y Candida albicans determinando la Concentración Mínima Inhibitoria (CMI. Hicimos pruebas de susceptibilidad con las fracciones Hex., CH2Cl2 y la MeOH. La mayor inhibición la presentó la fracción MeOH frente a A. flavus (55 mm, P. digitatum (60 mm, P. funiculosum (56 mm y C. albicans (26 mm. Las actividades mostradas por las fracciones 1 y 2 de MeOH/EtOAc sugieren la acción de un efecto combinado frente a A flavus, P, digitatum y P. funiculosum. La CMI de la subfracción 1 MeOH/EtOAc frente a Candida albicans fue baja (32 µg/ml, y para P. digitatum la CMI fue moderada (128 µg/ml. Este extracto orgánico posee gran potencial de actividad antifúngica. Las pruebas fitoquímicas y los ensayos realizados por TLC al extracto orgánico y a la subfracción 1 MeOH/EtOAc, respectivamente, mostraron la presencia de alcaloides.Anti-fungi activity of organic extracts from the tree Fagara monophylla (Rutaceae in Venezuela. The tree Fagara monophylla ranges throughout Tropical America. The genus Fagara has a diversity of alkaloid compounds with antibiotic properties; nevertheless, there are few reports antifungal activity of its organic compounds. Organic extracts from Venezuelan F. monophylla were tested for antimicrobial activity against Aspergillus terreus, A. flavus, Penicillium digitatum, P. funiculosum, P. citrinum, Paecilomyces and Candida albicans. Minimal Inhibitory Concentration (MIC was determined. The susceptibility trials of organic fractions (Hex., CH2Cl2 and MeOH showed that the highest inhibition was presented by MeOH against A. flavus (55 mm, P. digitatum

  7. Black locust (Robinia pseudoacacia L. Improvement in Hungary: a Review

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    RÉDEI, Károly

    2008-01-01

    Full Text Available Black locust (Robinia pseudoacacia L. was the first forest tree species introduced andacclimated from North America to Europe at the beginning of the 17th century. It is a fast growing,nitrogen fixing, site tolerant, excellent coppicing species with frequent and abundant seed productionand relatively high yielding potential. It has a durable and high quality wood, which is used for manypurposes. Although native of North America, black locust is now naturalized and widely plantedthroughout the world from temperate to subtropical areas. In Hungary, this species has played a role ofgreat importance in the forest management, covering approximately 23% of the forested area andproviding about 19% of the annual timber output of the country. Due to the increasing interest in blacklocust growing in many countries, this study has been compiled with the aim of giving a summary onthe basis of research and improvement connected with the species over the past decades.

  8. Green synthesis of silver nano particles from Atalantia monophylla (L) Correa leaf extract, their antimicrobial activity and sensing capability of H2O2.

    Science.gov (United States)

    Mahadevan, S; Vijayakumar, S; Arulmozhi, P

    2017-12-01

    In the present study deals with the green synthesis of silver nano particles from methanolic leaf extracts of Atalantia monophylla. The synthesized nano-particles are characterized by UV-vis spectroscopy, PL, FTIR, XRD, SEM with EDAX and TEM. The nano-particles are indicated in absorption peak at 404 nm in the absorption spectrum. Further micro graphical analysis confirmed the average size was estimated about 35 nm and SEAD pattern authorized well crystalline materials. The FTIR studies help to confirm the functional group of synthesized silver nano particles. The XRD data shown the crystalline nature of nano particles and EDAX measurement indicates the purity of silver metal. The antimicrobial effect of silver nanoparticles was tested on pathogenic organisms using agar well diffusion method. Minimum inhibitory concentration (MIC) and Minimum bactericidal/fungicidal concentration (MBC/MFC) were also investigated in different concentrations of leaf extract. The results indicated that synthesized silver nano particle of A. monophylla leaf extract has the potential of antimicrobial activity against pathogenic microorganism. In addition, this is the first report on leaf synthesized silver nano particles of A. monophylla. The antimicrobial activity against pathogenic microorganisms and the ability to detect hydrogen peroxide using the silver nanoparticles were confirmed which would find applications in the development of new antimicrobial drugs and new biosensors to detect the presence of hydrogen peroxide in various samples respectively. Copyright © 2017 Elsevier Ltd. All rights reserved.

  9. Plant-water relationships in the Great Basin Desert of North America derived from Pinus monophylla hourly dendrometer records

    Science.gov (United States)

    Biondi, Franco; Rossi, Sergio

    2015-08-01

    Water is the main limiting resource for natural and human systems, but the effect of hydroclimatic variability on woody species in water-limited environments at sub-monthly time scales is not fully understood. Plant-water relationships of single-leaf pinyon pine ( Pinus monophylla) were investigated using hourly dendrometer and environmental data from May 2006 to October 2011 in the Great Basin Desert, one of the driest regions of North America. Average radial stem increments showed an annual range of variation below 1.0 mm, with a monotonic steep increase from May to July that yielded a stem enlargement of about 0.5 mm. Stem shrinkage up to 0.2 mm occurred in late summer, followed by an abrupt expansion of up to 0.5 mm in the fall, at the arrival of the new water year precipitation. Subsequent winter shrinkage and enlargement were less than 0.3 mm each. Based on 4 years with continuous data, diel cycles varied in both timing and amplitude between months and years. Phase shifts in circadian stem changes were observed between the growing season and the dormant one, with stem size being linked to precipitation more than to other water-related indices, such as relative humidity or soil moisture. During May-October, the amplitude of the phases of stem contraction, expansion, and increment was positively related to their duration in a nonlinear fashion. Changes in precipitation regime, which affected the diel phases especially when lasting more than 5-6 h, could substantially influence the dynamics of water depletion and replenishment in single-leaf pinyon pine.

  10. Proteomic Analysis of Etiolated Juvenile Tetraploid Robinia pseudoacacia Branches during Different Cutting Periods

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    Nan Lu

    2014-04-01

    Full Text Available The propagation of hard-branch cuttings of tetraploid Robinia pseudoacacia (black locust is restricted by the low rooting rate; however, etiolated juvenile tetraploid black locust branches result in a significantly higher rooting rate of cuttings compared with non-etiolated juvenile tetraploid branches. To identify proteins that influence the juvenile tetraploid branch rooting process, two-dimensional electrophoresis (2-DE and matrix-assisted laser desorption/ionization time-of-flight/time-of-flight mass spectra (MALDI-TOF/TOF-MS were used to analyze proteomic differences in the phloem of tetraploid R. pseudoacacia etiolated and non-etiolated juvenile branches during different cutting periods. A total of 58 protein spots differed in expression level, and 16 protein spots were only expressed in etiolated branches or non-etiolated ones. A total of 40 highly expressed protein spots were identified by mass spectrometry, 14 of which were accurately retrieved. They include nucleoglucoprotein metabolic proteins, signaling proteins, lignin synthesis proteins and phyllochlorin. These results help to reveal the mechanism of juvenile tetraploid R. pseudoacacia etiolated branch rooting and provide a valuable reference for the improvement of tetraploid R. pseudoacacia cutting techniques.

  11. Heat-induced chemical and color changes of extractive-free Black Locust (Rosinia Pseudoacacia) wood

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    Yao Chen; Jianmin Gao; Yongming Fan; Mandla A. Tshabalala; Nicole M. Stark

    2012-01-01

    To investigate chemical and color changes of the polymeric constituents of black locust (Robinia pseudoacacia) wood during heat treatment, extractive-free wood flour was conditioned to 30% initial moisture content (MC) and heated for 24 h at 120 °C in either an oxygen or nitrogen atmosphere. The color change was measured using the CIELAB color system. Chemical changes...

  12. Symbiosis of Arbuscular Mycorrhizal Fungi and Robinia pseudoacacia L. Improves Root Tensile Strength and Soil Aggregate Stability

    OpenAIRE

    Zhang, Haoqiang; Liu, Zhenkun; Chen, Hui; Tang, Ming

    2016-01-01

    Robinia pseudoacacia L. (black locust) is a widely planted tree species on Loess Plateau for revegetation. Due to its symbiosis forming capability with arbuscular mycorrhizal (AM) fungi, we explored the influence of arbuscular mycorrhizal fungi on plant biomass, root morphology, root tensile strength and soil aggregate stability in a pot experiment. We inoculated R. pseudoacacia with/without AM fungus (Rhizophagus irregularis or Glomus versiforme), and measured root colonization, plant growth...

  13. Pinus Monophylla (Single Needled Pinyon Pine) show morphological changes in needle cell size and stomata over the past 100 years of rising CO2 in Western Arid Ecosystems.

    Science.gov (United States)

    Van De Water, P. K.

    2016-12-01

    The size, frequency, and morphology of leaf surface stomata is used to reconstruct past levels of atmospheric carbon dioxide over geologic time. This technique relies on measuring cell and cell-clusters to correlate with changes of known carbon dioxide levels in the atmosphere. Unfortunately, not all plants are suitable because the occurrence and placement of stomatal cell-complexes differ significantly between plant families. Monocot and dicot angiosperms exhibit different types of stomata and stomatal complexes that lack order and thus are unsuitable. But, in gymnosperms, the number and distribution of stomata and pavement cells is formalized and can be used to reconstruct past atmospheric carbon dioxide levels. However, characteristic of each plant species must still be considered. For example, conifers are useful but are divided into two-needle to five-needle pines, or have irregular surface morphology (Pseudotsuga sp. and Tsuga sp. needles). This study uses Pinus monophylla an undivided needle morphology, that being a cylinder has no interior surface cells. Pinus monophylla (single needle pinyon) needles were collected along Geiger Grade (Nevada State Highway 341, Reno) in 2005 and 2013 from 1500m to 2195m. Herbarium samples were also collected from 13 historic collections made between 1911 and 1994. The study determined changes with elevation and/or over time using in these populations. Using Pinus monophylla, insured needles represented a single surface with stomata, stomatal complex cells, and co-occurring pavement cell types. Results show decreased stomatal densities (stomata/area), stomatal index (stomata/stomata + epidermal cells) and stable stomata per row (stomata/row) . Epidermal cell density (Epidermal Cells /Area), and Pavement cell density (Pavement cell/area) track stomatal density similarly. Data comparison, using elevation in the 2005 and 2013 collections showed no-significant trends. Individual stomatal complexes show no differences in the size

  14. Variability of anatomical-physiological traits in black locust clones - Robinia pseudoacacia L

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    Orlović Saša S.

    2004-01-01

    Full Text Available Variability within R. pseudoacacia species represents an important factor in selection of fast-growing genotypes. Therefore, it is important to identify superior individuals according to their anatomical and physiological traits. This paper presents the results of a study of genotype variability of the main leaf anatomical (frequency, length and width of stomata, leaflet thickness among veins, leaflet thickness on the main vein, mesophyll thickness, length and width of vascular bundle of main vein and physiological (leaf area, photosynthetic pigments content and content of N P, K, Ca, Na parameters among five clones of Robinia pseudoacacia L. Significant interclonal variations were observed in the investigated parameters. Clone R-56 had the highest N, P, and K concentrations, the largest mesophyll volume and the highest pigment concentration. We concluded that the clone R-56, although without a remarkable leaf area, possesses the ability for high photosynthetic production. The results are going to be used in further work on selection.

  15. Antimicrobial and antioxidant activity of the vegetative and reproductive organs of Robinia pseudoacacia

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    Marinas Ioana C.

    2014-01-01

    Full Text Available The study was aimed to investigate antimicrobial and antioxidant activity of ethanol extracts obtain from leaves, seeds and sheaths of R. pseudoacacia. Total phenolic content (TPC, Folin-Ciocalteu method, antioxidant activity (TEAC assay and antimicrobial activity (agar disk diffusion method and broth dilution method of vegetative and reproductive organs of R. pseudoacacia were done. The highest content of polyphenols (expressed as gallic acid equivalents, GAE obtained for R. pseudoacacia leaves extract (266.7 μg GAE mL-1 extract followed by seeds extract (232.2 μg GAE mL-1 extract. The HPLC analysis showed presence of catechin (0.925 μg mL-1, rutin (0.831 μg mL-1, resveratrol (0.664 μg mL-1 and quercetin (0.456 μg mL-1 in leaves and catechin (0.127 μg mL-1, epicatechin (0.239 μg mL-1 and rutin (0.231 μg mL-1 in seeds extract. The results showed that the studied extracts exhibited a selective antimicrobial effect directed against Gram-positive (Staphylococcus aureus, Bacillus subtilis and Gram-negative (Pseudomonas aeruginosa, Klebsiella pneumonie and Escherichia coli bacterial strains. The combination leaves extract / antibiotic had the highest synergistic effect when compared to seeds and sheaths extracts. The same extract with penicillin, kanamycin and rifampin had highest synergetic effect against methicillin resistant S. aureus strain (MRSA, a strain which it has gained a great interest of microbiologists within past decades. The chemical characterization of ethanol extracts from the vegetative and reproductive organs of Robinia pseudoacacia, synergistic effects of certain antibiotics and acacia extracts, potential to increase antimicrobial activity of some commercial antibiotics against MRSA were done for the first time.

  16. Time-dependent phosphate dynamics in reclaimed lignite-mine soils under Robinia pseudoacacia L.

    Science.gov (United States)

    Freese, Dirk; Slazak, Anna

    2017-04-01

    As a consequence of the opencast lignite mining activities in Lusatia/Germany, the cultivation of Short Rotation Coppice plantations (SRC) has been considered as a viable option for reclamation purposes. In this region an area of about 1000 km2 has been degraded. Owing to the unfavourable biotic and abiotic properties of the overburden mining substrate, the biogeochemical processes associated with the soil ecosystem development are in the initial phase. The substrate contains very low amount of nutrients, mainly very low total Phosphate (P) content nearly equal to zero. The lack of P is one of the main issues in reclamation of this marginal site. Therefore, the cultivation of perennial SRC with Robinia pseudoacacia L. is considered as a supporting measurement for effective soil reclamation. In this context, it is important to understand the dynamics of P in this "initial substrate" to describe the P availability and P sorption/desorption.. Iron/aluminium oxides and organic matter are the soil constituents most strongly affecting the reactions and rate of P sorption and desorption, also in post-mining soils. Therefore the interaction of these oxides and organic matter with P is essential with regard to developing effective nutrient management strategies for marginal sites. The study focused on P sorption and desorption with regard to different development stages of R. pseudoacacia L. established in a short rotation coppices on the post mining soils. to describe the P availability (Pav) in relation to total P mobility. The hypothesis is that SRC would cause significant changes in soil P dynamics over time in post lignite mining soils. The trees has been planted in between 1995 and 2007, which means that R. pseudoacacia L. was in a range of 2 to 20 years old at different sampling times. Soil was sampled in 2008 and 2015 at three depths of: 0-3cm, 3-10 cm and 10-30 cm. To characterize the P dynamics different P forms and P sorption/desorption kinetics were analysed

  17. dbVar

    Data.gov (United States)

    U.S. Department of Health & Human Services — dbVar is a database of genomic structural variation. It accepts data from all species and includes clinical data. It can accept diverse types of events, including...

  18. Selection occurs within linear fruit and during the early stages of reproduction in Robinia pseudoacacia.

    Science.gov (United States)

    Yuan, Cun-Quan; Sun, Yu-Han; Li, Yun-Fei; Zhao, Ke-Qi; Hu, Rui-Yang; Li, Yun

    2014-03-21

    Pollen donor compositions differ during the early stages of reproduction due to various selection mechanisms. In addition, ovules linearly ordered within a fruit have different probabilities of reaching maturity. Few attempts, however, have been made to directly examine the magnitude and timing of selection, as well as the mechanisms during early life stages and within fruit. Robinia pseudoacacia, which contains linear fruit and non-random ovule maturation and abortion patterns, has been used to study the viability of selection within fruit and during the early stages of reproduction. To examine changes in the pollen donor composition during the early stages of reproduction and of progeny originating from different positions within fruit, paternity analyses were performed for three early life stages (aborted seeds, mature seeds and seedlings) in the insect-pollinated tree R. pseudoacacia. Selection resulted in an overall decrease in the level of surviving selfed progeny at each life stage. The greatest change was observed between the aborted seed stage and mature seed stage, indicative of inbreeding depression (the reduced fitness of a given population that occurs when related individual breeding was responsible for early selection). A selective advantage was detected among paternal trees. Within fruits, the distal ends showed higher outcrossing rates than the basal ends, indicative of selection based on the order of seeds within the fruit. Our results suggest that selection exists both within linear fruit and during the early stages of reproduction, and that this selection can affect male reproductive success during the early life stages. This indicates that tree species with mixed-mating systems may have evolved pollen selection mechanisms to increase the fitness of progeny and adjust the population genetic composition. The early selection that we detected suggests that inbreeding depression caused the high abortion rate and low seed set in R. pseudoacacia.

  19. Sobrevivência de Ctenanthe lanceolata Petersen e Goeppertia monophylla (Vell. Borchs. & S.Suárez (Marantaceae após o desmatamento. Survival of the Ctenanthe lanceolata Petersen and Goeppertia monophylla (Vell. Borchs. & S.Suárez (Marantaceae after deforestation.

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    Vanessa Rebouças dos SANTOS

    2016-12-01

    Full Text Available A construção do Rodoanel Mário Covas – Trecho Sul no Estado de São Paulo suprimiu uma área de mata com regiões de várzea e vegetação remanescente da Mata Atlântica. Após o resgate de plantas presentes na área, muitos espécimes, que antes da supressão estavam no interior da mata, passaram a localizar-se nas bordas da pista, como é o caso de duas espécies de marantáceas: Ctenanthe lanceolata Petersen e Goeppertia monophylla (Vell. Borchs. & S. Suárez, que foram escolhidas para este estudo por se encontrarem presentes, em grande número, na área afetada pela construção dessa obra. Essas alterações levam a mudanças na composição da vegetação, favorecendo as espécies mais adaptadas às novas condições. O objetivo do presente trabalho foi acompanhar a sobrevivência dos indivíduos transplantados em áreas adjacentes à obra e dos exemplares que permaneceram na beira da estrada após a supressão da vegetação dessas duas espécies de Marantaceae. De modo geral, os resultados demonstram que não é necessário o resgate de exemplares de Ctenanthe lanceolata Petersen nem de Goeppertia monophylla (Vell. Borchs. & S. Suárez, que permaneceram na borda da mata após o desmatamento, pois a taxa de sobrevivência destas duas espécies é alta (Ctenanthe, 80% na borda e 100% no interior e Goeppertia, 100% na borda e interior. Porém, uma vez resgatadas e realocadas, essas espécies apresentaram boa adaptação (100% de sobrevivência das duas espécies nas condições ambientais (ensolarada e sombreada avaliadas neste estudo. Desta forma tais realocações, quando consideradas oportunas, seriam viáveis.The construction of the Mario Covas Rodoanel – Southern Section in São Paulo/BR deforested an area with lowland regions and remnant vegetation of the Atlantic Forest. After the rescue of plants present in the area, many specimens, which were inside the woods before the suppression, happened to be located in the runway edge

  20. Symbiosis of Arbuscular Mycorrhizal Fungi and Robinia pseudoacacia L. Improves Root Tensile Strength and Soil Aggregate Stability.

    Science.gov (United States)

    Zhang, Haoqiang; Liu, Zhenkun; Chen, Hui; Tang, Ming

    2016-01-01

    Robinia pseudoacacia L. (black locust) is a widely planted tree species on Loess Plateau for revegetation. Due to its symbiosis forming capability with arbuscular mycorrhizal (AM) fungi, we explored the influence of arbuscular mycorrhizal fungi on plant biomass, root morphology, root tensile strength and soil aggregate stability in a pot experiment. We inoculated R. pseudoacacia with/without AM fungus (Rhizophagus irregularis or Glomus versiforme), and measured root colonization, plant growth, root morphological characters, root tensile force and tensile strength, and parameters for soil aggregate stability at twelve weeks after inoculation. AM fungi colonized more than 70% plant root, significantly improved plant growth. Meanwhile, AM fungi elevated root morphological parameters, root tensile force, root tensile strength, Glomalin-related soil protein (GRSP) content in soil, and parameters for soil aggregate stability such as water stable aggregate (WSA), mean weight diameter (MWD) and geometric mean diameter (GMD). Root length was highly correlated with WSA, MWD and GMD, while hyphae length was highly correlated with GRSP content. The improved R. pseudoacacia growth, root tensile strength and soil aggregate stability indicated that AM fungi could accelerate soil fixation and stabilization with R. pseudoacacia, and its function in revegetation on Loess Plateau deserves more attention.

  1. Spectroscopic analysis of the role of extractives on heat-induced discoloration of black locust (Robinia pseudoacacia)

    Science.gov (United States)

    Yao Chen; Yongming Fan; Jianmin Gao; Mandla A. Tshabalala; Nicole M. Stark

    2012-01-01

    To investigate the role of extractives on heat-induced discoloration of wood, samples of black locust (Robinia pseudoacacia) wood flour were extracted with various solvents prior to heat-treatment. Analysis of their color parameters and chromophoric structures showed that the chroma value of the unextracted sample decreased while that of the...

  2. Biophysical controls on canopy transpiration in a black locust ( Robinia pseudoacacia ) plantation on the semi-arid Loess Plateau, China

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    Lei Jiao; Nan Lu; Ge Sun; Eric J. Ward; Bojie Fu

    2015-01-01

    In the semi-arid Loess Plateau of China, black locust (Robinia pseudoacacia) was widely planted for soil conservation and afforestation purposes during the past three decades. Investigating biophysical controls on canopy transpiration (Ec) of the plantations is essential to understanding the effects of afforestation on watershed hydrology and regional water resources....

  3. Phosphorus Sorption Kinetics in Reclaimed Lignite Mine Soils under Different Age Stands of Robinia pseudoacacia L. in Northeast Germany

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    Anna Slazak

    2015-01-01

    Full Text Available The objectives of the work were to study phosphorus (P dynamics in postmining soils under short rotation coppices at different stages of Robinia pseudoacacia L. growth (2, 3, 4, and 14 years old. From the results obtained, the amount of total P, total organic P, plant available P, and P stock increased with increasing age of R. pseudoacacia. However, values were very low compared to that recommended for optimum plant growth, reflecting a general deficit in P. Additionally, the P sorption and desorption processes were investigated. The total P sorption capacity obtained from the laboratory experiments was on average, 2.5 times greater for soils under the oldest R. pseudoacacia than values measured at the younger sites. Values of P saturation factor (α were comparatively lower compared to that reported in the literature. This may be attributed primarily to the less P saturation of the postmining soils, coupled with rather small contents of oxalate iron Feox and aluminium Alox (sum of 47 mmol kg−1. Results demonstrate significant difference between 2 and 14 years old R. pseudoacacia; thus establishing of short rotation coppice (SRC on degraded marginal sites may be a valuable method of soil reclamations.

  4. DETERMINATION OF THE SEEDLINGS QUALITY CLASSES OF BLACK LOCUST (Robinia pseudoacacia L. ORIGINS

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    İbrahim Turna

    2000-04-01

    Full Text Available classification criteria is the assesment of height and root-colar diameter together. newly seedling quality classification (YS have highly first grade seedlings. The most important According to the results of this study, all the origins determined with respect to either TSE or determined by using factor analysis. Furthermore the morphological characteristics that affect the seedling quality classification were diameter. The resulting seedling quality classification were controlled by using discriminant analysis. determined according to height, root-colar diameter and combination of both height and root-colar provenances were soved in KTÜ Nursery. One year later, these seedlings were lifted. Quality norms in KTÜ Nursery were used. Eighteen different origin seeds of Black locust of which eleven are egzotic In this present study, 1+0 Black Locust ( Robinia pseudoacacia L. seedlings grown

  5. (Mucuna pruriens var. utilis)

    African Journals Online (AJOL)

    Kumasi: Cita Printing Press Ltd. Okorie, J.U. (1983). A Guide to Livestock Production in Nigeria. Cambridge: McMillan. Osei, S.A. and Dei, H.K. (1998). The nutritive value of raw Mucuna pruriens (var utilis) for broiler finishers. Ghana Journal Agricultural Science, 31: 55-59. Osei, S.A., Atuahene, C.C., Donkoh, A., Kwateng, K., ...

  6. Stand Structure and Growth of Mixed White Poplar (Populus alba L. and Black Locust (Robinia pseudoacacia L. Plantations in Hungary

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    RÉDEI, Károly

    2006-01-01

    Full Text Available The paper deals with the stand structure and yield of black locust (Robinia pseudoacacia L.plantations mixed with white poplar (Populus alba L. in various proportions, partly applying a newmethodological approach. The main stand structure and yield factors were determined separately for eachspecies, measured stem by stem, using volume functions prepared for each species. To demonstrate theadvantage of white poplar - black locust mixed plantations over monocultures, a set of models expressingsingle-tree growth was elaborated. The models were applied to simulated stands with different proportionsof P. alba and R. pseudoacacia. The estimated growth indicated that the advantage of mixing the twospecies peaked at about 40-50% P. alba (basal area percentage between age 16 and 21. The trial mayindicate that if two species have fast initial growth rates and similar rotation ages, planting them in mixedstands might lead to increased yield.

  7. A new species of Xorides Latreille (Hymenoptera, Ichneumonidae, Xoridinae parasitizing Pterolophia alternata (Coleoptera, Cerambycidae in Robinia pseudoacacia

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    Mao-Ling Sheng

    2012-11-01

    Full Text Available A new species is described, Xorides benxicus Sheng, sp. n., reared from the cerambycid twig-boring pest of Robinia pseudoacacia Linnaeus, Pterolophia alternata Gressitt 1938, in Benxi County, Liaoning Province, China. A key is given to the species similar to Xorides benxicus Sheng, namely X. asiasius Sheng & Hilszczański 2009, X. cinnabarius Sheng & Hilszczański 2009 and X. sapporensis (Uchida 1928.

  8. The Effect of Heat Treatment on the chemical and color change of Black Locust (Robinia Pseudoacacia) wood flour

    Science.gov (United States)

    Yao Chen; Yongming Fan; Jianmin Gao; Nicole M. Stark

    2012-01-01

    The aim of this study was to investigate the effects of oxygen and moisture content (MC) on the chemical and color changes of black locust (Robinia pseudoacacia) wood during heat treatment. The wood flour was conditioned to different initial MCs and heated for 24 h at a constant temperature of 120°C in either oxygen or nitrogen atmosphere. The pH values and...

  9. Root-soil air gap and resistance to water flow at the soil-root interface of Robinia pseudoacacia.

    Science.gov (United States)

    Liu, X P; Zhang, W J; Wang, X Y; Cai, Y J; Chang, J G

    2015-12-01

    During periods of water deficit, growing roots may shrink, retaining only partial contact with the soil. In this study, known mathematical models were used to calculate the root-soil air gap and water flow resistance at the soil-root interface, respectively, of Robinia pseudoacacia L. under different water conditions. Using a digital camera, the root-soil air gap of R. pseudoacacia was investigated in a root growth chamber; this root-soil air gap and the model-inferred water flow resistance at the soil-root interface were compared with predictions based on a separate outdoor experiment. The results indicated progressively greater root shrinkage and loss of root-soil contact with decreasing soil water potential. The average widths of the root-soil air gap for R. pseudoacacia in open fields and in the root growth chamber were 0.24 and 0.39 mm, respectively. The resistance to water flow at the soil-root interface in both environments increased with decreasing soil water potential. Stepwise regression analysis demonstrated that soil water potential and soil temperature were the best predictors of variation in the root-soil air gap. A combination of soil water potential, soil temperature, root-air water potential difference and soil-root water potential difference best predicted the resistance to water flow at the soil-root interface. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  10. Short rotation coppice with Robinia pseudoacacia L. : a land use option for carbon sequestration on reclaimed mine sites

    Energy Technology Data Exchange (ETDEWEB)

    Quinkenstein, A.; Bohm, C.; Freese, D. [Brandenburg Univ. of Technology, Cottbus (Germany). Soil Protection and Recultivation; Huttl, R.R. [Brandenburg Univ. of Technology, Cottbus (Germany). Soil Protection and Recultivation; GFZ German Research Centre for Geosciences, Potsdam (Germany)

    2010-07-01

    A study in northeast Germany has shown that the establishment of short rotation coppices (SRC) of Robinia pseudoacacia L. may be a viable option for improving farmers income on marginal soils. The plantations produce woody biomass at a fast rate for energy use. Carbon is accumulated in the harvestable biomass, as well as in the stump and the roots. These plant compartments form a long-term carbon storage pool because they can survive a harvest, stay vital at the site and continue to grow as the plant ages. As organic litter decomposes, additional carbon is sequestered under SRC as soil organic carbon. The carbon sequestration in SRC of R. pseudoacacia on mining sites within the Lower Lusatian region in northeast Germany was studied and the results were complemented with findings of current field studies conducted on reclaimed mine sites. The average above ground dry matter productivity of R. pseudoacacia was found to be 3 to 10 Mg per hectare per year, depending on the plantation age and rotation period. It has been estimated that the carbon storage within the soil accounts to a carbon sequestration of up to 6 Mg per hectare per year for a soil depth of 60 cm.

  11. Biochemical changes in cuttings of Robinia pseudoacacia after treatment with naphthenate

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    SLAVKO KEVRESAN

    2007-10-01

    Full Text Available Naphthenic acids were isolated from gas oil fractions (distillation interval 168–290 °C of Vojvodina crude oil “Velebit”, characterized and their biological ac­tivity evaluated by the biochemical changes in cuttings of Robinia pseudoacacia after treatment with naphthenate. The activities of IAA peroxidase, total peroxi­da­ses and amylase, as well as the contents of reducing sugars and total proteins, were determined in the basal parts of soft wood cuttings of black locust after treat­ment with sodium naphthenate or the sodium salt of 1-naphthaleneacetic acid (NAA, con­­centration 10-7 mol dm-3 for 3 or 6 h. High activities of IAA oxidase and amy­lase, together with a low activity of peroxidase (which is known as being stimula­tory for the initiation and activation of primordia were obtained after the three-hour treatment with sodium naphthenate. Six-hour treatment had an inhibitory effect on the examined biochemical markers. The effects of three- and six-hour treatments with NAA were between those of the corresponding treatment with naphthenic acids.

  12. [Dynamic changes of Robinia pseudoacacia sap flow in hilly-gully region of Loess Plateau].

    Science.gov (United States)

    Hu, Wei; Du, Feng; Xu, Xue-Xuan; Zhang, Liang-De

    2010-06-01

    From April 14 to October 10, 2009, the dynamic changes of Robinia pseudoacacia sap flow in the hilly-gully region of Loess Plateau were measured with thermal dissipation probe. Meantime, the photosynthetic active radiation (PAR), air temperature, relative air humidity, water vapor pressure deficit (VPD), wind speed, and rainfall were monitored. The diurnal variation of the sap flow velocity (SFV) displayed a single-peak curve, but the pattern varied among different months. In April, the sap flow started to increase at about 12:00, and reached the peak at about 18:00. From May to August, the sap flow started to increase at 5:30-7:30, and reached the peak at about 15:00. In September and October, the sap flow started to increase at about 8:00, and reached the peak at 11:30-13:00. The monthly average SFV was the highest in August and the lowest in April, with the value being 0.002610 cm x s(-1) and 0.000549 cm x s(-1), respectively. During the monitoring period, the sap flow velocity was significantly correlated with PAR, air temperature, VPD, wind speed, and air relative humidity, and the correlation coefficients declined in the order of air temperature > VPD > PAR > relative humidity > wind speed. The sap flow velocity could be estimated by the linear equation with variables PAR and VPD, and the regression coefficients were highly significant.

  13. Pengaruh Cekaman Kekeringan terhadap Perilaku Fisiologis dan Pertumbuhan Bibit Black Locust (Robinia pseudoacacia

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    Novita Anggraini

    2015-01-01

    Full Text Available Black locust (Robinia pseudoacacia is a native species from North America and it has spread to Europe and Asia. Black locust is also one species used for land rehabilitation in semiarid and arid areas. However, adaptability of black locust on their distribution area is quite disturbing due to its invasive potential that tends to suppress the growth of native plants. The purpose of this study is to examine the effect of drought stress through watering volume and watering intervals treatments on physiological behavior and growth of black locust seedlings, and to analyze the level of black locust on drought tolerance through water use efficiency (WUE character and chlorophyll content. The watering volumes are 30-40 % of field capacity representing drought conditions and 70-80 % of field capacity representing good water conditions, while the watering intervals are 1, 3 and 7 days. Trend analysis is used to analyze the data. The results indicate that the lower watering volume (30-40 % and the longer the watering interval (for 7 days, the lower the photosynthesis and transpiration rate, stomatal conductance and growth (height, diameter, shoot dry weight and root of plants, but the higher the WUE and chlorophyll content. Increasing WUE and chlorophyll content are two indicators indicating that black locust is able to adapt (tolerant to drought stress situations. Therefore, the use of black locust for dry land reclamation requires special attention and careful strategy to avoid its invasive impact in the future.

  14. Effect of toasting intensity at cooperage on phenolic compounds in acacia (Robinia pseudoacacia) heartwood.

    Science.gov (United States)

    Sanz, Miriam; Fernández de Simón, Brígida; Esteruelas, Enrique; Muñoz, Ángel Ma; Cadahía, Estrella; Hernández, Teresa; Estrella, Isabel; Pinto, Ernani

    2011-04-13

    The phenolic composition of heartwood from Robinia pseudoacacia, commonly known as false acacia, before and after toasting in cooperage was studied by HPLC-DAD and HPLC-DAD/ESI-MS/MS. A total of 41 flavonoid and nonflavonoid compounds were identified, some tentatively, and quantified. Seasoned acacia wood showed high concentrations of flavonoid and low levels of nonflavonoid compounds, the main compounds being the dihydroflavonols dihydrorobinetin, fustin, tetrahydroxy, and trihydroxymethoxy dihydroflavonol, the flavonol robinetin, the flavanones robtin and butin, and a leucorobinetinidin, none of which are found in oak wood. The low molecular weight (LMW) phenolic compounds present also differed from those found in oak, since compounds with a β-resorcylic structure, gallic related compounds, protocatechuic aldehyde, and some hydroxycinnamic compounds are included, but only a little gallic and ellagic acid. Toasting changed the chromatographic profiles of extracts spectacularly. Thus, the toasted acacia wood contributed flavonoids and condensed tannins (prorobinetin type) in inverse proportion to toasting intensity, while LMW phenolic compounds were directly proportional to toasting intensity, except for gallic and ellagic acid and related compounds. Even though toasting reduced differences between oak and acacia, particular characteristics of this wood must be taken into account when considering its use in cooperage: the presence of flavonoids and compounds with β-resorcylic structure and the absence of hydrolyzable tannins.

  15. Immune enhancement of Taishan Robinia pseudoacacia polysaccharide on recombinant Proteus mirabilis OmpA in chickens.

    Science.gov (United States)

    Zhang, Yongbing; Yang, Shifa; Zhao, Xue; Yang, Ya; Li, Bing; Zhu, Fujie; Zhu, Ruiliang

    2014-09-01

    This study was conducted to evaluate the effects of Taishan Robinia pseudoacacia polysaccharide (TRPPS) on immune responses of chickens immunized with Proteus mirabilis outer membrane protein A (OmpA) recombinant protein vaccine. OmpA was expressed in Pichia pastoris and mixed with TRPPS. 360 chickens were randomly divided into six groups. Groups I to IV were treated with OmpA which contained TRPPS of three different dosages, Freund's adjuvant, respectively. Groups V and VI were treated with pure OmpA and physiological saline, respectively. The data showed that the antibody titers against OmpA, the concentration of IL-2, CD4 +, and CD8 +, T lymphocyte proliferation rate in Group II were significantly higher (P < 0.05) than those in the other groups, little difference in SIgA content was observed among groups I to VI. These results indicated that TRPPS strengthened humoral and cellular immune responses against recombinant OmpA vaccine. Moreover, 200 mg/mL TRPPS showed significance (P < 0.05) compared with Freund's adjuvant. Therefore, TRPPS can be developed into an adjuvant for recombinant subunit vaccine. Copyright © 2014 Elsevier B.V. All rights reserved.

  16. Effects of Drought Frequency on Growth Performance and Transpiration of Young Black Locust (Robinia pseudoacacia L.

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    Dario Mantovani

    2014-01-01

    Full Text Available Black locust (Robinia pseudoacacia L. is a drought-tolerant fast growing tree, which could be an alternative to the more common tree species used in short-rotation coppice on marginal land. The plasticity of black locust in the form of ecophysiological and morphological adaptations to drought is an important precondition for its successful growth in such areas. However, adaptation to drought stress is detrimental to primary production. Furthermore, the soil water availability condition of the initial stage of development may have an impact on the tree resilience. We aimed to investigate the effect of drought stress applied during the resprouting on the drought tolerance of the plant, by examining the black locust growth patterns. We exposed young trees in lysimeters to different cycles of drought. The drought memory affected the plant growth performance and its drought tolerance: the plants resprouting under drought conditions were more drought tolerant than the well-watered ones. Black locust tolerates drastic soil water availability variations without altering its water use efficiency (2.57 g L−1, evaluated under drought stress. Due to its constant water use efficiency and the high phenotypic plasticity, black locust could become an important species to be cultivated on marginal land.

  17. Black locust (Robinia pseudoacacia L. Short-Rotation Crops under Marginal Site Conditions

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    RÉDEI, Károly

    2011-01-01

    Full Text Available The improvement of the reliability of renewable resources and the decline in reserves offossile raw material in the coming decades will lead to increasing demands for wood material andconsequently to a greater role of short rotation forestry (SRF. Particular efforts have been made inEurope to substitute fossils with renewables, in this context the proportion of renewable energy shouldbe increased to 20% by 2020. SRF can be provide relatively high dendromass (biomass incrementrates if the short rotation tree plantations are grown under favourable site conditions and for anoptimum rotation length. However, in many countries only so-called marginal sites are available forsetting up tree plantations for energy purpose. For SRF under marginal site conditions black locust(Robinia pseudoacacia L. can be considered as one of the most promising tree species thanks to itsfavourable growing characteristics. According to a case study presented in the paper black locust canproduce a Mean Annual Increment (MAI of 2.9 to 9.7 oven-dry tons ha–1 yr–1 at ages between 3 and7 years using a stocking density of 6667 stems ha–1. On the base of the presented results and accordingto international literature the expected dendromass volume shows great variation, depending upon site,species, their cultivars, initial spacing and length of rotation cycle.

  18. Self-organizing feature map (neural networks) as a tool to select the best indicator of road traffic pollution (soil, leaves or bark of Robinia pseudoacacia L.).

    Science.gov (United States)

    Samecka-Cymerman, A; Stankiewicz, A; Kolon, K; Kempers, A J

    2009-07-01

    Concentrations of the elements Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb and Zn were measured in the leaves and bark of Robinia pseudoacacia and the soil in which it grew, in the town of Oleśnica (SW Poland) and at a control site. We selected this town because emission from motor vehicles is practically the only source of air pollution, and it seemed interesting to evaluate its influence on soil and plants. The self-organizing feature map (SOFM) yielded distinct groups of soils and R. pseudoacacia leaves and bark, depending on traffic intensity. Only the map classifying bark samples identified an additional group of highly polluted sites along the main highway from Wrocław to Warszawa. The bark of R. pseudoacacia seems to be a better bioindicator of long-term cumulative traffic pollution in the investigated area, while leaves are good indicators of short-term seasonal accumulation trends.

  19. Profiling of differentially expressed genes in roots of Robinia pseudoacacia during nodule development using suppressive subtractive hybridization.

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    Hongyan Chen

    Full Text Available BACKGROUND: Legume-rhizobium symbiosis is a complex process that is regulated in the host plant cell through gene expression network. Many nodulin genes that are upregulated during different stages of nodulation have been identified in leguminous herbs. However, no nodulin genes in woody legume trees, such as black locust (Robinia pseudoacacia, have yet been reported. METHODOLOGY/PRINCIPAL FINDINGS: To identify the nodulin genes involved in R. pseudoacacia-Mesorhizobium amorphae CCNWGS0123 symbiosis, a suppressive subtractive hybridization approach was applied to reveal profiling of differentially expressed genes and two subtracted cDNA libraries each containing 600 clones were constructed. Then, 114 unigenes were identified from forward SSH library by differential screening and the putative functions of these translational products were classified into 13 categories. With a particular interest in regulatory genes, twenty-one upregulated genes encoding potential regulatory proteins were selected based on the result of reverse transcription-polymerase chain reaction (RT-PCR analysis. They included nine putative transcription genes, eight putative post-translational regulator genes and four membrane protein genes. The expression patterns of these genes were further analyzed by quantitative RT-PCR at different stages of nodule development. CONCLUSIONS: The data presented here offer the first insights into the molecular foundation underlying R. pseudoacacia-M. amorphae symbiosis. A number of regulatory genes screened in the present study revealed a high level of regulatory complexity (transcriptional, post-transcriptional, translational and post-translational that is likely essential to develop symbiosis. In addition, the possible roles of these genes in black locust nodulation are discussed.

  20. Influence of Robinia pseudoacacia short rotation coppice on soil physical properties

    Science.gov (United States)

    Xavier, Morvan; Isabelle, Bertrand; Gwenaelle, Gibaud

    2015-04-01

    Human activities can lead to the degradation of soil physical properties. For instance, machinery traffic across the land can induce the development of compacted areas at the wheel tracks. It leads to a decrease in porosity which results in a decrease of the hydraulic conductivity, and therefore, prevents water infiltration and promotes surface runoff. Land use, soil management and soil cover also have a significant influence on soil physical properties (Kodesova et al., 2011). In the arable land, surface runoff and soil erosion are enhanced by the absence of soil cover for part of the year and by the decrease of aggregate stability due to a decline of soil organic matter. In that context, few studies focused on the effects of a Robinia pseudoacacia short rotation coppice (SRC) on soil physical properties. Therefore, this study aims to determine the effect of the conversion of a grassland in a SRC on soil physical properties. These properties have also been compared to those of arable land and natural forest. For that, in several plots of the experimental farm of Grignon (30 km west of Paris, France), different measurements were performed: i) soil water retention on a pressure plate apparatus for 7 water potential between 0 and 1500 kPa, ii) bulk density using the method for gravelly and rocky soil recommended by the USDA, iii) aggregate stability using the method described in Le Bissonnais (1996), and iv) soil hydraulic conductivity using a Guelph permeameter. All these measurements were performed on the same soil type and on different land uses: arable land (AL), grassland (GL), natural forest (NF) and short rotation coppice (SRC) of Robinia pseudoacacia planted 5 years ago. Soil water retention measurements are still under progress and will be presented in congress. Bulk density measurements of the AL, GL and SRC are not significantly different. They ranged from 1.32 to 1.42. Only the NF measurements are significantly lower than the other (0.97). Aggregate

  1. Chemical composition and natural durability of juvenile and mature heartwood of Robinia pseudoacacia L.

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    João V.F Latorraca

    2011-09-01

    Full Text Available The aim of this study was to characterize the properties of juvenile and mature heartwood of Robinia pseudoacacia L. (black locust. The content, the composition, and subcellular localization of heartwood extractives were studied in 14 old-grown trees from forest sites in Germany and Hungary, as well as in 16 younger trees of four clone types. Heartwood extractives (methanol and acetone extraction were analysed by HPLC-chromatography. UV microspectrophotometry was used to localize the extractives in the wood cell walls. The natural durability of juvenile and mature heartwood was analysed according to the European standard EN 350-1. Growth analyses, as well as the chemical analyses, showed that in Robinia the formation of juvenile wood is restricted to the first 10-15 years of cambial growth. In the heartwood high contents of phenolic compounds and flavonoids were present, which were in high concentrations in the cell walls of the axial parenchyma and of the vessels. In the juvenile heartwood, the content of these extractives is significantly lower than in the mature heartwood. In agree, the juvenile heartwood had a lower resistance to decay by Coniophora puteana (brown rot fungus and Coriolus versicolor (white rot fungus compared to the mature.O objetivo deste estudo foi caracterizar as propriedades da região de cerne dos lenhos juvenis e adultos de Robinia pseudoacacia L. O conteúdo, a composição, bem como a localização subcelular dos extrativos foram estudados em 14 árvores de florestas de produção na Alemanha e na Hungria, assim como em 16 árvores de quatro tipos clone. Os extrativos (metanol e acetona extração foram analisados por cromatografia-HPLC. O microespectrofotômetro de ultra violeta foi utilizado para localizar os extrativos nas paredes celulares da madeira. A durabilidade natural do lenho juvenil e adulto foi analisada de acordo com a norma europeia EN 350-1. Análises do incremento, bem como as análises qu

  2. The Silviculture of Black Locust (Robinia pseudoacacia L. in Hungary: a Review

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    Károly Rédei

    2011-12-01

    Full Text Available Background and Purpose: Black locust (Robinia pseudoacacia L. was the first forest tree species introduced and acclimated from North America to Europe at the beginning of the 17th century. Although native of North America, black locust is now naturalized and widely planted throughout the world from temperate to subtropical areas. In Hungary, this species has played a role of great importance in the forest management, covering approximately 23% of the forested area and providing about 19% of the annual timber output of the country. Due to the increasing interest in black locust growing in many countries, this study has been compiled with the aim of giving a summary on the basis of research and improvement connected with the species over the past decades. Material and Methods: Black locust forests in Hungary have been established on good as well as on medium and poor quality sites. Establishment of black locust stands producing timber of good quality is possible only on sites with adequate moisture and well-aerated and preferably light soils, rich in nutrients and humus. Black locust forests on medium and poor quality sites are utilized for the production of fuel wood, fodder, poles and props, as well as for honey production, soil protection and environmental improvement. Results and Conclusion: Hungary has got much experience in black locust growing, as it has been grown for more than 250 years in the country. It is a fast growing, nitrogen fixing, site tolerant, excellent coppicing species with frequent and abundant seed production and relatively high yielding potential. It has a durable and high quality wood, which is used for many purposes. Being aware of the importance of black locust, forest research in Hungary has been engaged in resolving various problems of black locust management for a long time, and a lot of research results have already been implemented in the practice.

  3. The Assimilate Partitioning Importance for Heartwood Extractives Formation in Robinia Pseudoacacia l. of Different Ages

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    Oliver Dünisch

    Full Text Available ABSTRACTThis study aimed to investigate the influence of tree age on the assimilates partitioning and its significance for the formation of heartwood extractives in Robinia pseudoacacia L. (black locust. Assimilate translocation in 6- and 15-year-old plants was measured in May and August 2006 using the 14CO2 feeding method. The heartwood extractives content in the sapwood-heartwood transition zone and in individual tree rings of the pure heartwood were analysed by HPLC-chromatography. All plants, buds and young leaves showed the strongest 14C specific activity compared to other plant parts in May and August(14C specific activity in buds/leaves of 6-years old plants: 35.2-37.0%, 15-years old plants: 31.4-32.2%. However, in plants labelled in August 2006 at the sapwood-heartwood transition zone also showed a strong assimilates sink, while only small amounts of assimilates were translocated to the sapwood-heartwood transition zone in the plants labelled in May 2006. The amount of assimilates transported to the sapwood-heartwood transition zone was significantly higher in the 15-year-old plants compared to the 6-year-old plants. This was monitored by a higher content of extractives in the heartwood formed by the older plants compared to heartwood formed by the younger plants. The results indicate that uneven assimilate partitioning in younger and older black locust plants affects the heartwood extractives formation, which might lead to a lower natural durability of the heartwood formed by younger trees compared to heartwood formed by older trees.

  4. var. puiggarianum (Batrachospermales, Rhodophyta

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    María Cecilia Gauna

    2005-01-01

    Full Text Available Se coleccionó Batrachospermum atrum var. puiggarianum por primera vez en la provincia de Buenos Aires. La identificación de las muestras se basó en el análisis de la morfología microscópica y en el número cromosómico de cada una de las generaciones de su ciclo de vida bajo cultivo. Los talos se estudiaron con microscopio óptico, y la cariología, por medio de la técnica de carmín acético. El ciclo de vida presentó tres generaciones: una gametofítica haploide, una carposporófitica diploide que originó la última fase Chantransia diploide. Los talos gametófitos estuvieron formados por verticilos separados por zonas internodales, cada uno de ellos constituidos por ramas primarias densamente comprimidas. Entre éstas se observaron ramas portadoras de espermatangios y de carpogonios. Las zonas internodales estuvieron constituidas por células corticales y axiales. Los carposporófitos ovoideos estuvieron formados por filamentos gonimoblásticos portadores de carposporangios terminales. El estado Chantransia se caracterizó por presentar filamentos cortos con pocas células. El material estudiado presentó un número haploide n = 4 y diploide 2n = 8.

  5. Study on Microclimate Characteristics and Vertical Variation of Potential Evapotranspiration of the Robinia pseudoacacia Forest in the Loess Plateau of China

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    Jianjun Zhang

    2013-01-01

    Full Text Available With the water and soil conservation forests of Robinia pseudoacacia in the Malian beach of Hongqi farm, Ji County, Shanxi province, as the research object, this study estimated the potential evapotranspiration in the open space outside the forest and at the heights of 3 m, 6 m, and 10 m in the forests with the climate data during 2011-2012 and the upgraded Penman-Monteith formula; then, this study explored the microclimate characteristics inside and outside the Robinia pseudoacacia forest and thereafter revealed the vertical variation rules of potential evapotranspiration of Robinia pseudoacacia. The results indicate that the air temperature, relative humidity, wind speed, and potential evapotranspiration at different heights above the ground surface showed similar changing trends, but with some variation during different periods. In addition, the weather also had impacts on the potential evapotranspiration. In April, July, and October, the change of potential evapotranspiration of the Robinia pseudoacacia forests showed a bimodal curve in the sunny days and rainy days, while it showed a single-peak curve with quite small fluctuation in the rainy days. However, it showed a single-peak pattern even in the sunny days in January, and it showed no fluctuation in the snowy days in January.

  6. Can the life-history strategy explain the success of the exotic trees Ailanthus altissima and Robinia pseudoacacia in Iberian floodplain forests?

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    Pilar Castro-Díez

    Full Text Available Ailanthus altissima and Robina pseudoacacia are two successful invasive species of floodplains in central Spain. We aim to explain their success as invaders in this habitat by exploring their phenological pattern, vegetative and sexual reproductive growth, and allometric relations, comparing them with those of the dominant native tree Populus alba. During a full annual cycle we follow the timing of vegetative growth, flowering, fruit set, leaf abscission and fruit dispersal. Growth was assessed by harvesting two-year old branches at the peaks of vegetative, flower and fruit production and expressing the mass of current-year leaves, stems, inflorescences and infrutescences per unit of previous-year stem mass. Secondary growth was assessed as the increment of trunk basal area per previous-year basal area. A. altissima and R. pseudoacacia showed reproductive traits (late flowering phenology, insect pollination, late and long fruit set period, larger seeds different from P. alba and other native trees, which may help them to occupy an empty reproductive niche and benefit from a reduced competition for the resources required by reproductive growth. The larger seeds of the invaders may make them less dependent on gaps for seedling establishment. If so, these invaders may benefit from the reduced gap formation rate of flood-regulated rivers of the study region. The two invasive species showed higher gross production than the native, due to the higher size of pre-existing stems rather than to a faster relative growth rate. The latter was only higher in A. altissima for stems, and in R. pseudoacacia for reproductive organs. A. altissima and R. pseudoacacia showed the lowest and highest reproductive/vegetative mass ratio, respectively. Therefore, A. altissima may outcompete native P. alba trees thanks to a high potential to overtop coexisting plants whereas R. pseudoacacia may do so by means of a higher investment in sexual reproduction.

  7. ValRob project - Robinia pseudoacacia wood valorisation : Characterization and production of biomolecules of cosmetic interest from local wood

    OpenAIRE

    Breton, Christian

    2016-01-01

    Dans le cadre de recherches génériques sur les déterminants génétiques, moléculaires et biochimiques de la qualité du bois, il a été mis en évidence d’intéressantes propriétés biologiques et colorantes au niveau de deux types d’extraits de bois de robinier (Robinia pseudoacacia). Bien représentée en métropole et en région Centre, cette essence fixe naturellement l’azote atmosphérique, s’accommode de sols peu fertiles et est tolérante au stress hydrique. Elle représente de ce fait une espèce d...

  8. Profiling of Differentially Expressed Genes in Roots of Robinia pseudoacacia during Nodule Development Using Suppressive Subtractive Hybridization

    Science.gov (United States)

    Wang, Xinye; Liu, Sisi; Zhang, Feilong; Wei, Gehong

    2013-01-01

    Background Legume-rhizobium symbiosis is a complex process that is regulated in the host plant cell through gene expression network. Many nodulin genes that are upregulated during different stages of nodulation have been identified in leguminous herbs. However, no nodulin genes in woody legume trees, such as black locust (Robinia pseudoacacia), have yet been reported. Methodology/Principal findings To identify the nodulin genes involved in R. pseudoacacia-Mesorhizobium amorphae CCNWGS0123 symbiosis, a suppressive subtractive hybridization approach was applied to reveal profiling of differentially expressed genes and two subtracted cDNA libraries each containing 600 clones were constructed. Then, 114 unigenes were identified from forward SSH library by differential screening and the putative functions of these translational products were classified into 13 categories. With a particular interest in regulatory genes, twenty-one upregulated genes encoding potential regulatory proteins were selected based on the result of reverse transcription-polymerase chain reaction (RT-PCR) analysis. They included nine putative transcription genes, eight putative post-translational regulator genes and four membrane protein genes. The expression patterns of these genes were further analyzed by quantitative RT-PCR at different stages of nodule development. Conclusions The data presented here offer the first insights into the molecular foundation underlying R. pseudoacacia–M. amorphae symbiosis. A number of regulatory genes screened in the present study revealed a high level of regulatory complexity (transcriptional, post-transcriptional, translational and post-translational) that is likely essential to develop symbiosis. In addition, the possible roles of these genes in black locust nodulation are discussed. PMID:23776436

  9. Biomass production and water use of Black Locust (Robinia pseudoacacia L.) for short-rotation plantation

    Science.gov (United States)

    Mantovani, D.; Veste, M.; Freese, D.

    2012-04-01

    The early successional tree species Robinia pseudoacacia L. demonstrates a high potential for biomass production in short rotation plantations and agroforestry systems. On marginal lands and recultivated areas, often characterized by poor edaphic conditions, black locust is already successfully cropped. In southern Brandenburg (East Germany), vast areas have been exploited for lignite open cast mining and the outcome is a drastic alteration of the top soil layer and subsurface geological structure, causing a radical change of the hydrologic cycle. Soil poor in nutrient and carbon, combined with low rainfall, limits the reclamation of these areas and their use for conventional agriculture. However, promising results have been obtained by the establishment of black locust for bioenergy production. For the evaluation of the black locust growth potential in southern Brandenburg with its sandy soils and low annual mean rainfall, detailed information about the link between growth, transpiration and soil water availability are needed. Therefore, we determined the biomass-transpiration relation and formulated the equation that describes the intertwined interaction between water use and biomass production. The equation will be integrated into mathematical tools. To reduce the numerous environmental variables involved in field experiments, we grew black locust under semi-controlled environmental conditions by using wick lysimeters. The lysimeters were filled with sandy loam soil and water was supplied solely by an automatic irrigation system in relation to the volumetric soil water content (7%, 10%, and 14%). Rainfall is excluded by a light transmissive roof. Water use efficiency (WUE) at whole plant level is evaluated by the ratio between the biomass produced during the vegetation period and the cumulative daily water use. The study encompasses ecophysiological investigations of the gas exchange (H2O and CO2) on single leaves, to evaluate the influence of the stomata

  10. Examination of correlation between histidine and nickel absorption by Morus L., Robinia pseudoacacia L. and Populus nigra L. using HPLC-MS and ICP-MS.

    Science.gov (United States)

    Ozen, Sukran Akkus; Yaman, Mehmet

    2016-08-02

    In this study, HPLC-MS and ICP-MS methods were used for the determination of histidine and nickel in Morus L., Robinia pseudoacacia L., and Populus nigra L. leaves taken from industrial areas including Gaziantep and Bursa cities. In the determination of histidine by HPLC-MS, all of the system parameters such as flow rate of mobile phase, fragmentor potential, injection volume and column temperature were optimized and found to be 0.2 mL min(-1), 70 V, 15 µL, and 20°C, respectively. Under the optimum conditions, histidine was extracted from plant sample by distilled water at 90°C for 30 min. Concentrations of histidine as mg kg(-1) were found to be between 2-9 for Morus L., 6-13 for Robinia pseudoacacia L., and 2-10 for Populus nigra L. Concentrations of nickel were in the ranges of 5-10 mg kg(-1) for Morus L., 3-10 mg kg(-1) for Robinia pseudoacacia L., and 0.6-4 mg kg(-1) for Populus nigra L. A significant linear correlation (r = 0.78) between histidine and Ni was observed for Populus nigra L., whereas insignificant linear correlation for Robinia pseudoacacia L. (r = 0.22) were seen. Limits of detection (LOD) and quantitation (LOQ) were found to be 0.025 mg Ni L(-1) and 0.075 mg Ni L(-1), respectively.

  11. Quantification of cyanamide in young seedlings of Vicia species, Lens culinaris, and Robinia pseudo-acacia by gas chromatography-mass spectrometry.

    Science.gov (United States)

    Kamo, Tsunashi; Takemura, Tomoko; Wasano, Naoya; Fujii, Yoshiharu; Hiradate, Syuntaro

    2012-01-01

    We quantified the cyanamide content of young leaves of nine Vicia species, Lens culinaris, and Robinia pseudo-acacia using a modified analytical procedure that made it possible to measure the cyanamide content of a single leaf. Recent molecular phylogenetic analysis suggests that cyanamide is present in V. benghalensis, which is placed in a monophyletic group with cyanamide-biosynthesizing plants, V. villosa and V. cracca; this suggestion was verified.

  12. The Combined Effects of Arbuscular Mycorrhizal Fungi (AMF and Lead (Pb Stress on Pb Accumulation, Plant Growth Parameters, Photosynthesis, and Antioxidant Enzymes in Robinia pseudoacacia L.

    Directory of Open Access Journals (Sweden)

    Yurong Yang

    Full Text Available Arbuscular mycorrhizal fungi (AMF are considered as a potential biotechnological tool for improving phytostabilization efficiency and plant tolerance to heavy metal-contaminated soils. However, the mechanisms through which AMF help to alleviate metal toxicity in plants are still poorly understood. A greenhouse experiment was conducted to evaluate the effects of two AMF species (Funneliformis mosseae and Rhizophagus intraradices on the growth, Pb accumulation, photosynthesis and antioxidant enzyme activities of a leguminous tree (Robinia pseudoacacia L. at Pb addition levels of 0, 500, 1000 and 2000 mg kg(-1 soil. AMF symbiosis decreased Pb concentrations in the leaves and promoted the accumulation of biomass as well as photosynthetic pigment contents. Mycorrhizal plants had higher gas exchange capacity, non-photochemistry efficiency, and photochemistry efficiency compared with non-mycorrhizal plants. The enzymatic activities of superoxide dismutase (SOD, ascorbate peroxidases (APX and glutathione peroxidase (GPX were enhanced, and hydrogen peroxide (H2O2 and malondialdehyde (MDA contents were reduced in mycorrhizal plants. These findings suggested that AMF symbiosis could protect plants by alleviating cellular oxidative damage in response to Pb stress. Furthermore, mycorrhizal dependency on plants increased with increasing Pb stress levels, indicating that AMF inoculation likely played a more important role in plant Pb tolerance in heavily contaminated soils. Overall, both F. mosseae and R. intraradices were able to maintain efficient symbiosis with R. pseudoacacia in Pb polluted soils. AMF symbiosis can improve photosynthesis and reactive oxygen species (ROS scavenging capabilities and decrease Pb concentrations in leaves to alleviate Pb toxicity in R. pseudoacacia. Our results suggest that the application of the two AMF species associated with R. pseudoacacia could be a promising strategy for enhancing the phytostabilization efficiency of Pb

  13. Factors controlling plasticity of leaf morphology in Robinia pseudoacacia: III. biophysical constraints on leaf expansion under long-term water stress

    Science.gov (United States)

    Yanxiang ​Zhang; Maria Alejandra Equiza; Quanshui Zheng; Melvin T. Tyree

    2011-01-01

    In this article, we measured the relative growth rate (RGR) of leaves of Robinia pseudoacacia seedlings under well-watered and water-stressed conditions (mid-day Ψw = leaf water potential estimated with a pressure bomb of −0.48 and −0.98 MPa, respectively). Pressure–volume (PV) curves were done on growing leaves at 25, 50 and 95% of the mature size...

  14. Bactericidal Effect of Extracts and Metabolites of Robinia pseudoacacia L. on Streptococcus mutans and Porphyromonas gingivalis Causing Dental Plaque and Periodontal Inflammatory Diseases

    Directory of Open Access Journals (Sweden)

    Jayanta Kumar Patra

    2015-04-01

    Full Text Available The mouth cavity hosts many types of anaerobic bacteria, including Streptococcus mutans and Porphyromonas gingivalis, which cause periodontal inflammatory diseases and dental caries. The present study was conducted to evaluate the antibacterial potential of extracts of Robinia pseudoacacia and its different fractions, as well as some of its natural compounds against oral pathogens and a nonpathogenic reference bacteria, Escherichia coli. The antibacterial activity of the crude extract and the solvent fractions (hexane, chloroform, ethyl acetate and butanol of R. pseudoacacia were evaluated against S. mutans, P. gingivalis and E. coli DH5α by standard micro-assay procedure using conventional sterile polystyrene microplates. The results showed that the crude extract was more active against P. gingivalis (100% growth inhibition than against S. mutans (73% growth inhibition at 1.8 mg/mL. The chloroform and hexane fractions were active against P. gingivalis, with 91 and 97% growth inhibition, respectively, at 0.2 mg/mL. None of seven natural compounds found in R. pseudoacacia exerted an antibacterial effect on P. gingivalis; however, fisetin and myricetin at 8 µg/mL inhibited the growth of S. mutans by 81% and 86%, respectively. The crude extract of R. pseudoacacia possesses bioactive compounds that could completely control the growth of P. gingivalis. The antibiotic activities of the hexane and chloroform fractions suggest that the active compounds are hydrophobic in nature. The results indicate the effectiveness of the plant in clinical applications for the treatment of dental plaque and periodontal inflammatory diseases and its potential use as disinfectant for various surgical and orthodontic appliances.

  15. The Combined Effects of Arbuscular Mycorrhizal Fungi (AMF) and Lead (Pb) Stress on Pb Accumulation, Plant Growth Parameters, Photosynthesis, and Antioxidant Enzymes in Robinia pseudoacacia L.

    Science.gov (United States)

    Liang, Yan; Ghosh, Amit; Chen, Jie; Tang, Ming

    2015-01-01

    Arbuscular mycorrhizal fungi (AMF) are considered as a potential biotechnological tool for improving phytostabilization efficiency and plant tolerance to heavy metal-contaminated soils. However, the mechanisms through which AMF help to alleviate metal toxicity in plants are still poorly understood. A greenhouse experiment was conducted to evaluate the effects of two AMF species (Funneliformis mosseae and Rhizophagus intraradices) on the growth, Pb accumulation, photosynthesis and antioxidant enzyme activities of a leguminous tree (Robinia pseudoacacia L.) at Pb addition levels of 0, 500, 1000 and 2000 mg kg-1 soil. AMF symbiosis decreased Pb concentrations in the leaves and promoted the accumulation of biomass as well as photosynthetic pigment contents. Mycorrhizal plants had higher gas exchange capacity, non-photochemistry efficiency, and photochemistry efficiency compared with non-mycorrhizal plants. The enzymatic activities of superoxide dismutase (SOD), ascorbate peroxidases (APX) and glutathione peroxidase (GPX) were enhanced, and hydrogen peroxide (H2O2) and malondialdehyde (MDA) contents were reduced in mycorrhizal plants. These findings suggested that AMF symbiosis could protect plants by alleviating cellular oxidative damage in response to Pb stress. Furthermore, mycorrhizal dependency on plants increased with increasing Pb stress levels, indicating that AMF inoculation likely played a more important role in plant Pb tolerance in heavily contaminated soils. Overall, both F. mosseae and R. intraradices were able to maintain efficient symbiosis with R. pseudoacacia in Pb polluted soils. AMF symbiosis can improve photosynthesis and reactive oxygen species (ROS) scavenging capabilities and decrease Pb concentrations in leaves to alleviate Pb toxicity in R. pseudoacacia. Our results suggest that the application of the two AMF species associated with R. pseudoacacia could be a promising strategy for enhancing the phytostabilization efficiency of Pb contaminated

  16. The Urban Environment Can Modify Drought Stress of Small-Leaved Lime (Tilia cordata Mill. and Black Locust (Robinia pseudoacacia L.

    Directory of Open Access Journals (Sweden)

    Astrid Moser

    2016-03-01

    Full Text Available The urban environment characterized by various stresses poses challenges to trees. In particular, water deficits and high temperatures can cause immense drought stress to urban trees, resulting in reduced growth and die-off. Drought-tolerant species are expected to be resilient to these conditions and are therefore advantageous over other, more susceptible species. However, the drought tolerance of urban trees in relation to the specific growth conditions in urban areas remains poorly researched. This study aimed to analyze the annual growth and drought tolerance of two common urban tree species, namely small-leaved lime (Tilia cordata Mill. (T. cordata and black locust (Robinia pseudoacacia L. (R. pseudoacacia, in two cities in southern Germany in relation to their urban growing conditions. Marked growth reductions during drought periods and subsequent fast recovery were found for R. pseudoacacia, whereas T. cordata exhibited continued reduced growth after a drought event, although these results were highly specific to the analyzed city. We further show that individual tree characteristics and environmental conditions significantly influence the growth of urban trees. Canopy openness and other aspects of the surrounding environment (water supply and open surface area of the tree pit, tree size, and tree species significantly affect urban tree growth and can modify the ability of trees to tolerate the drought stress in urban areas. Sustainable tree planting of well adapted tree species to their urban environment ensures healthy trees providing ecosystem services for a high quality of life in cities.

  17. Self-organizing feature map (neural networks) as a tool to select the best indicator of road traffic pollution (soil, leaves or bark of Robinia pseudoacacia L.)

    Energy Technology Data Exchange (ETDEWEB)

    Samecka-Cymerman, A., E-mail: sameckaa@biol.uni.wroc.p [Department of Ecology, Biogeochemistry and Environmental Protection, Wroclaw University, ul. Kanonia 6/8, 50-328 Wroclaw (Poland); Stankiewicz, A.; Kolon, K. [Department of Ecology, Biogeochemistry and Environmental Protection, Wroclaw University, ul. Kanonia 6/8, 50-328 Wroclaw (Poland); Kempers, A.J. [Department of Environmental Sciences, Radboud University of Nijmegen, Toernooiveld, 6525 ED Nijmegen (Netherlands)

    2009-07-15

    Concentrations of the elements Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb and Zn were measured in the leaves and bark of Robinia pseudoacacia and the soil in which it grew, in the town of Olesnica (SW Poland) and at a control site. We selected this town because emission from motor vehicles is practically the only source of air pollution, and it seemed interesting to evaluate its influence on soil and plants. The self-organizing feature map (SOFM) yielded distinct groups of soils and R. pseudoacacia leaves and bark, depending on traffic intensity. Only the map classifying bark samples identified an additional group of highly polluted sites along the main highway from Wroclaw to Warszawa. The bark of R. pseudoacacia seems to be a better bioindicator of long-term cumulative traffic pollution in the investigated area, while leaves are good indicators of short-term seasonal accumulation trends. - Once trained, SOFM could be used in the future to recognize types of pollution.

  18. Assessment of genetic diversity and variation of Robinia pseudoacacia seeds induced by short-term spaceflight based on two molecular marker systems and morphological traits.

    Science.gov (United States)

    Yuan, C Q; Li, Y F; Sun, P; Sun, Y H; Zhang, G J; Yang, M S; Zhang, Y Y; Li, Y; Wang, L

    2012-12-17

    The black locust (Robinia pseudoacacia) is a forest legume that is highly valued as a honey plant and for its wood. We explored the effect of short-term spaceflight on development of R. pseudoacacia seedlings derived from seeds that endured a 15-day flight; the genetic diversity and variation of plants sampled from space-mutagenized seeds were compared to plants from parallel ground-based control seeds using molecular markers and morphological traits. In the morphology analysis, the space-mutagenized group had apparent variation compared with the control group in morphological traits, including plant height, basal diameter, number of branches, branch stipular thorn length, branch stipular thorn middle width, leaflet vertex angle, and tippy leaf vertex angle. Simple sequence repeat (SSR) and sequence-related amplified polymorphism (SRAP) molecular marker analyses showed a slightly higher levels of genetic diversity in the space-mutagenized group compared to the control group. In the SRAP analysis, the space-mutagenized group had 115 polymorphic bands vs 98 in the controls; 91.27% polymorphic loci vs 77.78% in the controls; 1.9127 ± 0.2834 alleles vs 1.7778 ± 0.4174 in the controls; Nei's genetic diversity (h) was 0.2930 ± 0.1631 vs 0.2688 ± 0.1862 in the controls, and the Shannon's information index (I) was 0.4452 ± 0.2177 vs 0.4031 ± 0.2596 in the controls. The number of alleles was significantly higher in the space-mutagenized group. In the SSR analysis, the space-mutagenized group also had more polymorphic bands (51 vs 46), a greater percentage of polymorphic loci (89.47% vs 80.70%); h was also higher (0.2534 ± 0.1533 vs 0.2240 ± 0.1743), as was I (0.3980 ± 0.2069 vs 0.3501 ± 0.2412). These results demonstrated that the range of genetic variation in the populations of R. pseudoacacia increased after spaceflight. It also suggested that the SSR and SRAP markers are effective markers for studying mutations and genetic diversity in R. pseudoacacia. The data

  19. Physiological and Proteomic Responses of Diploid and Tetraploid Black Locust (Robinia pseudoacacia L. Subjected to Salt Stress

    Directory of Open Access Journals (Sweden)

    Fanjuan Meng

    2013-10-01

    Full Text Available Tetraploid black locust (Robinia pseudoacacia L. is adaptable to salt stress. Here, we compared morphological, physiological, ultrastructural, and proteomic traits of leaves in tetraploid black locust and its diploid relatives under salt stress. The results showed that diploid (2× plants suffered from greater negative effects than those of tetraploid (4× plants. After salt treatment, plant growth was inhibited, photosynthesis was reduced, reactive oxygen species, malondialdehyde content, and relative electrolyte leakage increased, and defense-related enzyme activities decreased in 2× compared to those in 4×. In addition, salt stress resulted in distorted chloroplasts, swollen thylakoid membranes, accumulation of plastoglobules, and increased starch grains in 2× compared to those in 4×. However, 4× developed diverse responses under salt stress. A comparative proteomic analysis revealed that 41 and 37 proteins were differentially expressed in 2× and 4×, respectively. These proteins were mainly involved in photosynthesis, stress and defense, energy, metabolism, transcription/translation, and transportation. Distinct patterns of protein changes between 2× and 4× were analyzed. Collectively, our results suggest that the plants showed significantly different responses to salt stress based on ploidy level of the plant. The 4× possessed a better salt protection mechanism than that of 2×, suggesting salt tolerance in the polyploid plant.

  20. Effects of Rhizophagus irregularis on Photosynthesis and Antioxidative Enzymatic System in Robinia pseudoacacia L. under Drought Stress.

    Science.gov (United States)

    He, Fei; Sheng, Min; Tang, Ming

    2017-01-01

    Arbuscular mycorrhizal (AM) fungi colonize roots improving plant water status and tolerance to drought. However, it is not clear whether the presence of AM would affect the photosynthesis and antioxidant gene-enzymes response, which help to alleviate drought stress of the host plant. Here, pot experiments were performed to investigate the effects of Rhizophagus irregularis, an AM fungus, on the tissue water content, photosynthesis, reactive oxygen species (ROS) production, antioxidant enzyme activity and gene expression in black locust (Robinia pseudoacacia L.) seedlings which were subjected to well-watered or moderate drought stress. Mycorrhizal symbiosis increased relative water content (RWC) of plant roots and leaves, promoted the accumulation of biomass and chlorophyll (Chl) content, and improved photochemistry efficiency, regardless of watering regimes. Mycorrhizal plants had higher SOD, POD, CAT, APX, and GR activities, and the transcript levels of Cu/Zn-SOD. APX and GR, but lower O2(-), H2O2 and MDA concentrations in leaves and roots of black locust under drought and well-watered conditions. Results from the present study indicate that AM fungus (R. irregularis) symbiosis can enhance photosynthesis and ROS scavenging capabilities and increase RWC of leaves and roots to alleviate drought stress in black locust. Further research is needed to elucidate the relations among AM fungi and the metabolic pathways of antioxidant enzymes, and the function of antioxidant genes regulated by mycorrhizal symbiosis with the purpose of revealing the mechanisms of mycorrhizal-induced plant tolerance to drought stress.

  1. Effects of elevated carbon dioxide concentration on growth and N{sub 2} fixation of young Robinia pseudoacacia

    Energy Technology Data Exchange (ETDEWEB)

    Feng, Z; Flessa, H. [University of Gottingen, Institute of soil Science and Forest Nutrition, Gottingen, (Germany); Dyckmans, J. [University College Dublin, Faculty of Agriculture, Environmental Resource Management, Dublin (Ireland)

    2004-03-01

    The effects of elevated carbon dioxide concentration on carbon and nitrogen uptake and nitrogen source partitioning were determined in one year-old locust trees using a dual 13{sup C} and 15{sup N} continuous labelling experiment. Elevated carbon dioxide increased the fraction of new carbon in total carbon, but it did not alter carbon partitioning among plant compartments. Elevated carbon dioxide also increased the fraction of new nitrogen in total nitrogen. This was coupled with a shift in nitrogen source partitioning toward nitrogen fixation. Soil nitrogen uptake was not affected, but nitrogen fixation was markedly increased by elevated carbon dioxide treatment. The increased nitrogen fixation tended to decrease the C/N ratio in the presence of elevated carbon dioxide. Total dry mass of root nodules doubled in response to elevated carbon dioxide, however, this effect was not considered significant because of the great variability in root nodule formation. Overall, it was concluded that the growth of locust trees in an elevated carbon dioxide environment will not primarily be limited by nitrogen availability, giving the R. pseudoacacia species a competitive advantage over non-nitrogen-fixing tree species. It was also suggested that the increase in nitrogen fixation observed in response to elevated carbon dioxide treatment may play a key role in the growth response of forest ecosystems to elevated carbon dioxide by improving nitrogen availability for non-nitrogen-fixing trees. 51 refs., 1 tab., 4 figs.

  2. Growth under elevated air temperature alters secondary metabolites in Robinia pseudoacacia L. seedlings in Cd- and Pb-contaminated soils.

    Science.gov (United States)

    Zhao, Y H; Jia, X; Wang, W K; Liu, T; Huang, S P; Yang, M Y

    2016-09-15

    Plant secondary metabolites play a pivotal role in growth regulation, antioxidant activity, pigment development, and other processes. As the global climate changes, increasing atmospheric temperatures and contamination of soil by heavy metals co-occur in natural ecosystems, which alters the pH of rhizosphere soil and influences the bioavailability and mobility of metals. Elevated temperatures in combination with heavy metals are expected to affect plant secondary metabolites, but this issue has not been extensively examined. Here, we investigated secondary metabolites in Robiniapseudoacacia seedlings exposed to elevated temperatures using a passive warming device in combination with Cd- and Pb-contaminated soils. Heavy metals significantly stimulated the accumulation of saponins, phenolic compounds, and flavonoids in leaves and stems; alkaloid compounds increased in leaves and decreased in stems, and condensed tannins fluctuated. Elevated temperatures, alone and in combination with Cd and Pb, caused increases in secondary metabolites in the plant tissues. Phenolic compounds showed the greatest changes among the secondary metabolites and significant interactive effects of temperature and metals were observed. These results suggest that slightly elevated temperature could enhance protective and defense mechanisms of Robinia pseudoacacia seedlings exposed to heavy metals by stimulating the production of secondary metabolites. Copyright © 2016 Elsevier B.V. All rights reserved.

  3. Development and Evaluation of a Novel Set of EST-SSR Markers Based on Transcriptome Sequences of Black Locust (Robinia pseudoacacia L.

    Directory of Open Access Journals (Sweden)

    Qi Guo

    2017-07-01

    Full Text Available Black locust (Robinia pseudoacacia L. of the family Fabaceae is an ecologically and economically important deciduous tree. However, few genomic resources are available for this forest species, and few effective expressed sequence tag-derived simple sequence repeat (EST-SSR markers have been developed to date. In this study, paired-end sequencing was used to sequence transcriptomes of R. pseudoacacia by the Illumina HiSeq TM2000 platform, and EST-SSR loci were identified by de novo assembly. Furthermore, a total of 1697 primer pairs were successfully designed, from which 286 primers met the selection screening criteria; 94 pairs were randomly selected and tested for validation using polymerase chain reaction amplification. Forty-five primers were verified as polymorphic, with clear bands. The polymorphism information content values were 0.033–0.765, the number of alleles per locus ranged from 2 to 10, and the observed and expected heterozygosities were 0.000–0.931 and 0.035–0.810, respectively, indicating a high level of informativeness. Subsequently, 45 polymorphic EST-SSR loci were tested for amplification efficiency, using the verified primers, in an additional nine species of Leguminosae, 23 loci were amplified in more than three species, of which two loci were amplified successfully in all species. These EST-SSR markers provide a valuable tool for investigating the genetic diversity and population structure of R. pseudoacacia, constructing a DNA fingerprint database, performing quantitative trait locus mapping, and preserving genetic information.

  4. arXiv Observation of the $\\varXi^{-}_{b}\\to J/\\psi\\varLambda K^{-}$ decay

    CERN Document Server

    Aaij, Roel; Adinolfi, Marco; Ajaltouni, Ziad; Akar, Simon; Albrecht, Johannes; Alessio, Federico; Alexander, Michael; Ali, Suvayu; Alkhazov, Georgy; Alvarez Cartelle, Paula; Alves Jr, Antonio Augusto; Amato, Sandra; Amerio, Silvia; Amhis, Yasmine; An, Liupan; Anderlini, Lucio; Andreassi, Guido; Andreotti, Mirco; Andrews, Jason; Appleby, Robert; Archilli, Flavio; d'Argent, Philippe; Arnau Romeu, Joan; Artamonov, Alexander; Artuso, Marina; Aslanides, Elie; Auriemma, Giulio; Baalouch, Marouen; Babuschkin, Igor; Bachmann, Sebastian; Back, John; Badalov, Alexey; Baesso, Clarissa; Baker, Sophie; Balagura, Vladislav; Baldini, Wander; Barlow, Roger; Barschel, Colin; Barsuk, Sergey; Barter, William; Baryshnikov, Fedor; Baszczyk, Mateusz; Batozskaya, Varvara; Batsukh, Baasansuren; Battista, Vincenzo; Bay, Aurelio; Beaucourt, Leo; Beddow, John; Bedeschi, Franco; Bediaga, Ignacio; Bel, Lennaert; Bellee, Violaine; Belloli, Nicoletta; Belous, Konstantin; Belyaev, Ivan; Ben-Haim, Eli; Bencivenni, Giovanni; Benson, Sean; Berezhnoy, Alexander; Bernet, Roland; Bertolin, Alessandro; Betancourt, Christopher; Betti, Federico; Bettler, Marc-Olivier; van Beuzekom, Martinus; Bezshyiko, Iaroslava; Bifani, Simone; Billoir, Pierre; Bird, Thomas; Birnkraut, Alex; Bitadze, Alexander; Bizzeti, Andrea; Blake, Thomas; Blanc, Frederic; Blouw, Johan; Blusk, Steven; Bocci, Valerio; Boettcher, Thomas; Bondar, Alexander; Bondar, Nikolay; Bonivento, Walter; Bordyuzhin, Igor; Borgheresi, Alessio; Borghi, Silvia; Borisyak, Maxim; Borsato, Martino; Bossu, Francesco; Boubdir, Meriem; Bowcock, Themistocles; Bowen, Espen Eie; Bozzi, Concezio; Braun, Svende; Britsch, Markward; Britton, Thomas; Brodzicka, Jolanta; Buchanan, Emma; Burr, Christopher; Bursche, Albert; Buytaert, Jan; Cadeddu, Sandro; Calabrese, Roberto; Calvi, Marta; Calvo Gomez, Miriam; Camboni, Alessandro; Campana, Pierluigi; Campora Perez, Daniel Hugo; Capriotti, Lorenzo; Carbone, Angelo; Carboni, Giovanni; Cardinale, Roberta; Cardini, Alessandro; Carniti, Paolo; Carson, Laurence; Carvalho Akiba, Kazuyoshi; Casse, Gianluigi; Cassina, Lorenzo; Castillo Garcia, Lucia; Cattaneo, Marco; Cavallero, Giovanni; Cenci, Riccardo; Chamont, David; Charles, Matthew; Charpentier, Philippe; Chatzikonstantinidis, Georgios; Chefdeville, Maximilien; Chen, Shanzhen; Cheung, Shu-Faye; Chobanova, Veronika; Chrzaszcz, Marcin; Cid Vidal, Xabier; Ciezarek, Gregory; Clarke, Peter; Clemencic, Marco; Cliff, Harry; Closier, Joel; Coco, Victor; Cogan, Julien; Cogneras, Eric; Cogoni, Violetta; Cojocariu, Lucian; Collazuol, Gianmaria; Collins, Paula; Comerma-Montells, Albert; Contu, Andrea; Cook, Andrew; Coombs, George; Coquereau, Samuel; Corti, Gloria; Corvo, Marco; Costa Sobral, Cayo Mar; Couturier, Benjamin; Cowan, Greig; Craik, Daniel Charles; Crocombe, Andrew; Cruz Torres, Melissa Maria; Cunliffe, Samuel; Currie, Robert; D'Ambrosio, Carmelo; Da Cunha Marinho, Franciole; Dall'Occo, Elena; Dalseno, Jeremy; David, Pieter; Davis, Adam; De Bruyn, Kristof; De Capua, Stefano; De Cian, Michel; De Miranda, Jussara; De Paula, Leandro; De Serio, Marilisa; De Simone, Patrizia; Dean, Cameron Thomas; Decamp, Daniel; Deckenhoff, Mirko; Del Buono, Luigi; Demmer, Moritz; Dendek, Adam; Derkach, Denis; Deschamps, Olivier; Dettori, Francesco; Dey, Biplab; Di Canto, Angelo; Dijkstra, Hans; Dordei, Francesca; Dorigo, Mirco; Dosil Suárez, Alvaro; Dovbnya, Anatoliy; Dreimanis, Karlis; Dufour, Laurent; Dujany, Giulio; Dungs, Kevin; Durante, Paolo; Dzhelyadin, Rustem; Dziurda, Agnieszka; Dzyuba, Alexey; Déléage, Nicolas; Easo, Sajan; Ebert, Marcus; Egede, Ulrik; Egorychev, Victor; Eidelman, Semen; Eisenhardt, Stephan; Eitschberger, Ulrich; Ekelhof, Robert; Eklund, Lars; Ely, Scott; Esen, Sevda; Evans, Hannah Mary; Evans, Timothy; Falabella, Antonio; Farley, Nathanael; Farry, Stephen; Fay, Robert; Fazzini, Davide; Ferguson, Dianne; Fernandez Prieto, Antonio; Ferrari, Fabio; Ferreira Rodrigues, Fernando; Ferro-Luzzi, Massimiliano; Filippov, Sergey; Fini, Rosa Anna; Fiore, Marco; Fiorini, Massimiliano; Firlej, Miroslaw; Fitzpatrick, Conor; Fiutowski, Tomasz; Fleuret, Frederic; Fohl, Klaus; Fontana, Marianna; Fontanelli, Flavio; Forshaw, Dean Charles; Forty, Roger; Franco Lima, Vinicius; Frank, Markus; Frei, Christoph; Fu, Jinlin; Funk, Wolfgang; Furfaro, Emiliano; Färber, Christian; Gallas Torreira, Abraham; Galli, Domenico; Gallorini, Stefano; Gambetta, Silvia; Gandelman, Miriam; Gandini, Paolo; Gao, Yuanning; Garcia Martin, Luis Miguel; García Pardiñas, Julián; Garra Tico, Jordi; Garrido, Lluis; Garsed, Philip John; Gascon, David; Gaspar, Clara; Gavardi, Laura; Gazzoni, Giulio; Gerick, David; Gersabeck, Evelina; Gersabeck, Marco; Gershon, Timothy; Ghez, Philippe; Gianì, Sebastiana; Gibson, Valerie; Girard, Olivier Göran; Giubega, Lavinia-Helena; Gizdov, Konstantin; Gligorov, Vladimir; Golubkov, Dmitry; Golutvin, Andrey; Gomes, Alvaro; Gorelov, Igor Vladimirovich; Gotti, Claudio; Graciani Diaz, Ricardo; Granado Cardoso, Luis Alberto; Graugés, Eugeni; Graverini, Elena; Graziani, Giacomo; Grecu, Alexandru; Griffith, Peter; Grillo, Lucia; Gruberg Cazon, Barak Raimond; Grünberg, Oliver; Gushchin, Evgeny; Guz, Yury; Gys, Thierry; Göbel, Carla; Hadavizadeh, Thomas; Hadjivasiliou, Christos; Haefeli, Guido; Haen, Christophe; Haines, Susan; Hamilton, Brian; Han, Xiaoxue; Hansmann-Menzemer, Stephanie; Harnew, Neville; Harnew, Samuel; Harrison, Jonathan; Hatch, Mark; He, Jibo; Head, Timothy; Heister, Arno; Hennessy, Karol; Henrard, Pierre; Henry, Louis; van Herwijnen, Eric; Heß, Miriam; Hicheur, Adlène; Hill, Donal; Hombach, Christoph; Hopchev, P H; Hulsbergen, Wouter; Humair, Thibaud; Hushchyn, Mikhail; Hutchcroft, David; Idzik, Marek; Ilten, Philip; Jacobsson, Richard; Jaeger, Andreas; Jalocha, Pawel; Jans, Eddy; Jawahery, Abolhassan; Jiang, Feng; John, Malcolm; Johnson, Daniel; Jones, Christopher; Joram, Christian; Jost, Beat; Jurik, Nathan; Kandybei, Sergii; Karacson, Matthias; Kariuki, James Mwangi; Karodia, Sarah; Kecke, Matthieu; Kelsey, Matthew; Kenzie, Matthew; Ketel, Tjeerd; Khairullin, Egor; Khanji, Basem; Khurewathanakul, Chitsanu; Kirn, Thomas; Klaver, Suzanne; Klimaszewski, Konrad; Koliiev, Serhii; Kolpin, Michael; Komarov, Ilya; Koopman, Rose; Koppenburg, Patrick; Kosmyntseva, Alena; Kozachuk, Anastasiia; Kozeiha, Mohamad; Kravchuk, Leonid; Kreplin, Katharina; Kreps, Michal; Krokovny, Pavel; Kruse, Florian; Krzemien, Wojciech; Kucewicz, Wojciech; Kucharczyk, Marcin; Kudryavtsev, Vasily; Kuonen, Axel Kevin; Kurek, Krzysztof; Kvaratskheliya, Tengiz; Lacarrere, Daniel; Lafferty, George; Lai, Adriano; Lanfranchi, Gaia; Langenbruch, Christoph; Latham, Thomas; Lazzeroni, Cristina; Le Gac, Renaud; van Leerdam, Jeroen; Leflat, Alexander; Lefrançois, Jacques; Lefèvre, Regis; Lemaitre, Florian; Lemos Cid, Edgar; Leroy, Olivier; Lesiak, Tadeusz; Leverington, Blake; Li, Tenglin; Li, Yiming; Likhomanenko, Tatiana; Lindner, Rolf; Linn, Christian; Lionetto, Federica; Liu, Xuesong; Loh, David; Longstaff, Iain; Lopes, Jose; Lucchesi, Donatella; Lucio Martinez, Miriam; Luo, Haofei; Lupato, Anna; Luppi, Eleonora; Lupton, Oliver; Lusiani, Alberto; Lyu, Xiao-Rui; Machefert, Frederic; Maciuc, Florin; Maev, Oleg; Maguire, Kevin; Malde, Sneha; Malinin, Alexander; Maltsev, Timofei; Manca, Giulia; Mancinelli, Giampiero; Manning, Peter Michael; Maratas, Jan; Marchand, Jean François; Marconi, Umberto; Marin Benito, Carla; Marinangeli, Matthieu; Marino, Pietro; Marks, Jörg; Martellotti, Giuseppe; Martin, Morgan; Martinelli, Maurizio; Martinez Santos, Diego; Martinez Vidal, Fernando; Martins Tostes, Danielle; Massacrier, Laure Marie; Massafferri, André; Matev, Rosen; Mathad, Abhijit; Mathe, Zoltan; Matteuzzi, Clara; Mauri, Andrea; Maurice, Emilie; Maurin, Brice; Mazurov, Alexander; McCann, Michael; McNab, Andrew; McNulty, Ronan; Meadows, Brian; Meier, Frank; Meissner, Marco; Melnychuk, Dmytro; Merk, Marcel; Merli, Andrea; Michielin, Emanuele; Milanes, Diego Alejandro; Minard, Marie-Noelle; Mitzel, Dominik Stefan; Mogini, Andrea; Molina Rodriguez, Josue; Monroy, Ignacio Alberto; Monteil, Stephane; Morandin, Mauro; Morawski, Piotr; Mordà, Alessandro; Morello, Michael Joseph; Morgunova, Olga; Moron, Jakub; Morris, Adam Benjamin; Mountain, Raymond; Muheim, Franz; Mulder, Mick; Mussini, Manuel; Müller, Dominik; Müller, Janine; Müller, Katharina; Müller, Vanessa; Naik, Paras; Nakada, Tatsuya; Nandakumar, Raja; Nandi, Anita; Nasteva, Irina; Needham, Matthew; Neri, Nicola; Neubert, Sebastian; Neufeld, Niko; Neuner, Max; Nguyen, Thi Dung; Nguyen-Mau, Chung; Nieswand, Simon; Niet, Ramon; Nikitin, Nikolay; Nikodem, Thomas; Nogay, Alla; Novoselov, Alexey; O'Hanlon, Daniel Patrick; Oblakowska-Mucha, Agnieszka; Obraztsov, Vladimir; Ogilvy, Stephen; Oldeman, Rudolf; Onderwater, Gerco; Otalora Goicochea, Juan Martin; Otto, Adam; Owen, Patrick; Oyanguren, Maria Aranzazu; Pais, Preema Rennee; Palano, Antimo; Palombo, Fernando; Palutan, Matteo; Papanestis, Antonios; Pappagallo, Marco; Pappalardo, Luciano; Parker, William; Parkes, Christopher; Passaleva, Giovanni; Pastore, Alessandra; Patel, Girish; Patel, Mitesh; Patrignani, Claudia; Pearce, Alex; Pellegrino, Antonio; Penso, Gianni; Pepe Altarelli, Monica; Perazzini, Stefano; Perret, Pascal; Pescatore, Luca; Petridis, Konstantinos; Petrolini, Alessandro; Petrov, Aleksandr; Petruzzo, Marco; Picatoste Olloqui, Eduardo; Pietrzyk, Boleslaw; Pikies, Malgorzata; Pinci, Davide; Pistone, Alessandro; Piucci, Alessio; Placinta, Vlad-Mihai; Playfer, Stephen; Plo Casasus, Maximo; Poikela, Tuomas; Polci, Francesco; Poluektov, Anton; Polyakov, Ivan; Polycarpo, Erica; Pomery, Gabriela Johanna; Popov, Alexander; Popov, Dmitry; Popovici, Bogdan; Poslavskii, Stanislav; Potterat, Cédric; Price, Eugenia; Price, Joseph David; Prisciandaro, Jessica; Pritchard, Adrian; Prouve, Claire; Pugatch, Valery; Puig Navarro, Albert; Punzi, Giovanni; Qian, Wenbin; Quagliani, Renato; Rachwal, Bartolomiej; Rademacker, Jonas; Rama, Matteo; Ramos Pernas, Miguel; Rangel, Murilo; Raniuk, Iurii; Ratnikov, Fedor; Raven, Gerhard; Redi, Federico; Reichert, Stefanie; dos Reis, Alberto; Remon Alepuz, Clara; Renaudin, Victor; Ricciardi, Stefania; Richards, Sophie; Rihl, Mariana; Rinnert, Kurt; Rives Molina, Vicente; Robbe, Patrick; Rodrigues, Ana Barbara; Rodrigues, Eduardo; Rodriguez Lopez, Jairo Alexis; Rodriguez Perez, Pablo; Rogozhnikov, Alexey; Roiser, Stefan; Rollings, Alexandra Paige; Romanovskiy, Vladimir; Romero Vidal, Antonio; Ronayne, John William; Rotondo, Marcello; Rudolph, Matthew Scott; Ruf, Thomas; Ruiz Valls, Pablo; Saborido Silva, Juan Jose; Sadykhov, Elnur; Sagidova, Naylya; Saitta, Biagio; Salustino Guimaraes, Valdir; Sanchez Mayordomo, Carlos; Sanmartin Sedes, Brais; Santacesaria, Roberta; Santamarina Rios, Cibran; Santimaria, Marco; Santovetti, Emanuele; Sarti, Alessio; Satriano, Celestina; Satta, Alessia; Saunders, Daniel Martin; Savrina, Darya; Schael, Stefan; Schellenberg, Margarete; Schiller, Manuel; Schindler, Heinrich; Schlupp, Maximilian; Schmelling, Michael; Schmelzer, Timon; Schmidt, Burkhard; Schneider, Olivier; Schopper, Andreas; Schubert, Konstantin; Schubiger, Maxime; Schune, Marie Helene; Schwemmer, Rainer; Sciascia, Barbara; Sciubba, Adalberto; Semennikov, Alexander; Sergi, Antonino; Serra, Nicola; Serrano, Justine; Sestini, Lorenzo; Seyfert, Paul; Shapkin, Mikhail; Shapoval, Illya; Shcheglov, Yury; Shears, Tara; Shekhtman, Lev; Shevchenko, Vladimir; Siddi, Benedetto Gianluca; Silva Coutinho, Rafael; Silva de Oliveira, Luiz Gustavo; Simi, Gabriele; Simone, Saverio; Sirendi, Marek; Skidmore, Nicola; Skwarnicki, Tomasz; Smith, Eluned; Smith, Iwan Thomas; Smith, Jackson; Smith, Mark; Snoek, Hella; Soares Lavra, Lais; Sokoloff, Michael; Soler, Paul; Souza De Paula, Bruno; Spaan, Bernhard; Spradlin, Patrick; Sridharan, Srikanth; Stagni, Federico; Stahl, Marian; Stahl, Sascha; Stefko, Pavol; Stefkova, Slavorima; Steinkamp, Olaf; Stemmle, Simon; Stenyakin, Oleg; Stevens, Holger; Stevenson, Scott; Stoica, Sabin; Stone, Sheldon; Storaci, Barbara; Stracka, Simone; Straticiuc, Mihai; Straumann, Ulrich; Sun, Liang; Sutcliffe, William; Swientek, Krzysztof; Syropoulos, Vasileios; Szczekowski, Marek; Szumlak, Tomasz; T'Jampens, Stephane; Tayduganov, Andrey; Tekampe, Tobias; Tellarini, Giulia; Teubert, Frederic; Thomas, Eric; van Tilburg, Jeroen; Tilley, Matthew James; Tisserand, Vincent; Tobin, Mark; Tolk, Siim; Tomassetti, Luca; Tonelli, Diego; Topp-Joergensen, Stig; Toriello, Francis; Tournefier, Edwige; Tourneur, Stephane; Trabelsi, Karim; Traill, Murdo; Tran, Minh Tâm; Tresch, Marco; Trisovic, Ana; Tsaregorodtsev, Andrei; Tsopelas, Panagiotis; Tully, Alison; Tuning, Niels; Ukleja, Artur; Ustyuzhanin, Andrey; Uwer, Ulrich; Vacca, Claudia; Vagnoni, Vincenzo; Valassi, Andrea; Valat, Sebastien; Valenti, Giovanni; Vazquez Gomez, Ricardo; Vazquez Regueiro, Pablo; Vecchi, Stefania; van Veghel, Maarten; Velthuis, Jaap; Veltri, Michele; Veneziano, Giovanni; Venkateswaran, Aravindhan; Vernet, Maxime; Vesterinen, Mika; Viana Barbosa, Joao Vitor; Viaud, Benoit; Vieira, Daniel; Vieites Diaz, Maria; Viemann, Harald; Vilasis-Cardona, Xavier; Vitti, Marcela; Volkov, Vladimir; Vollhardt, Achim; Voneki, Balazs; Vorobyev, Alexey; Vorobyev, Vitaly; Voß, Christian; de Vries, Jacco; Vázquez Sierra, Carlos; Waldi, Roland; Wallace, Charlotte; Wallace, Ronan; Walsh, John; Wang, Jianchun; Ward, David; Wark, Heather Mckenzie; Watson, Nigel; Websdale, David; Weiden, Andreas; Whitehead, Mark; Wicht, Jean; Wilkinson, Guy; Wilkinson, Michael; Williams, Mark Richard James; Williams, Matthew; Williams, Mike; Williams, Timothy; Wilson, Fergus; Wimberley, Jack; Wishahi, Julian; Wislicki, Wojciech; Witek, Mariusz; Wormser, Guy; Wotton, Stephen; Wraight, Kenneth; Wyllie, Kenneth; Xie, Yuehong; Xing, Zhou; Xu, Zhirui; Yang, Zhenwei; Yao, Yuezhe; Yin, Hang; Yu, Jiesheng; Yuan, Xuhao; Yushchenko, Oleg; Zarebski, Kristian Alexander; Zavertyaev, Mikhail; Zhang, Liming; Zhang, Yanxi; Zhang, Yu; Zhelezov, Alexey; Zheng, Yangheng; Zhu, Xianglei; Zhukov, Valery; Zucchelli, Stefano

    2017-09-10

    The observation of the decay $\\varXi_{b}^{-}\\to J/\\psi\\varLambda K^{-}$ is reported, using a data sample corresponding to an integrated luminosity of $3~\\mathrm{fb}^{-1}$, collected by the LHCb detector in $pp$ collisions at centre-of-mass energies of $7$ and $8~\\mathrm{TeV}$. The production rate of $\\varXi_{b}^{-}$ baryons detected in the decay $\\varXi_{b}^{-}\\to J/\\psi\\varLambda K^{-}$ is measured relative to that of $\\varLambda_{b}^{0}$ baryons using the decay $\\varLambda_{b}^{0}\\to J/\\psi \\varLambda$. Integrated over the $b$-baryon transverse momentum $p_{\\rm T}<25~\\mathrm{GeV/}c $ and rapidity $2.0 < y < 4.5$, the measured ratio is \\begin{equation*} \\frac{f_{\\varXi_{b}^{-}}}{f_{\\varLambda_{b}^{0}}}\\frac{\\mathcal{B}(\\varXi_{b}^{-}\\to J/\\psi\\varLambda K^{-})}{\\mathcal{B}(\\varLambda_{b}^{0}\\to J/\\psi \\varLambda)}=(4.19\\pm 0.29~(\\mathrm{stat})\\pm0.14~(\\mathrm{syst}))\\times 10^{-2}, \\end{equation*}where $f_{\\varXi_{b}^{-}}$ and $f_{\\varLambda_{b}^{0}}$ are the fragmentation fractions of $b\\to\\varXi_{...

  5. Pest Plant Score of Alien Robinia Pseudoacacia in Rīga (Latvia and Kaunas (Lithuania / Svešzemju Sugas Robinia Pseudoacacia Invazitātes Novērtējums Rīgā (Latvija Un Kauņā (Lietuva

    Directory of Open Access Journals (Sweden)

    Straigytė Lina

    2015-08-01

    Full Text Available Robinia pseudoacacia ir svešzemju koku suga, kas plaši izplatīta Rīgas un Kauņas zaļajā zonā, kur pēdējos gados novērojama šīs sugas izplatīšanās un invāzija. Pētījuma mērķis bija novērtēt R. pseudoacacia invazitātes relatīvo nozīmi Rīgā un Kauņā. Sugas invāzijas pakāpe tika novērtēta, izmantojot Pest Plant Prioritization Process, kas pamatojas uz Analytic Hierarchy Process Method. Rezultāti parādīja, ka R. pseudoacacia invazitātes pakāpe bija vērtējama kā zemāka par vidējo (0,4; pašreizējā izplatības intensitāte salīdzinājumā ar potenciālo izplatības intensitāti vērtējama kā vidēja (0,57, savukārt sociālās, vides un ekonomiskās ietekmes novērtējums bija ļoti zems (0,17. Līdz ar to gala novērtējums R. pseudoacacia saskaņā ar Final Pest Plant Score bija tuvu vidējam (0,426. Iegūtais novērtējums norādīja, ka R. pseudoacacia ir vidējA invazitāte, bet piemērotos apstākļos, piemēram, gaismas palielināšanās gadījumā, tās izplatība pieaug.

  6. Black Locust (Robinia pseudoacacia L. Root Cuttings: Diversity and Identity Revealed by SSR Genotyping: A Case Study

    Directory of Open Access Journals (Sweden)

    Maria Emilia Malvolti

    2015-10-01

    Full Text Available Background and Purpose: Black locust (Robinia pseudoacacia L. is a valuable species native to North America and today widely planted throughout the world for biomass production. In Hungary, where Robinia has great importance in the forest management, the clones have been selected for plantations on good, medium and poor quality sites. To conserve the identity, superior clones are vegetatively propagated by root cuttings. At times the collection of root cuttings can cause uncertainty for clonal identity because of the overlap of roots from neighboring plants. This can occur especially when the repository is damaged from severe environmental accidents and the planting layout has been lost. The aim of this study has been to verify by molecular markers the diversity or identity of black locust clones by root cuttings harvested in a damaged trial. Materials and Methods: Root cuttings of 91 clones belonging to five cultivars were collected in a trial severely damaged by storms and flooding periods. The obtained plantlets were analyzed with nine microsatellite (SSR markers and the genetic identity/diversity within and among the plants was tested using the software GenAlEx version 6. Results: Multilocus genotypes (MLG and the Paetkau’s assignation test (1985 revealed genetic variability among the samples: the analyzed plantlets were grouped in four classes instead of the five expected. In addition, 6 unique genotypes have been detected. Conclusions: This study remarks problems that may arise during the harvest of Robinia’s root cuttings, especially when the planting layout has been confused. Molecular analyses can be successfully used to control the germplasm before its sale as guaranty for nurseries, farmers and stakeholders.

  7. Mapping the Global Potential Geographical Distribution of Black Locust (Robinia Pseudoacacia L. Using Herbarium Data and a Maximum Entropy Model

    Directory of Open Access Journals (Sweden)

    Guoqing Li

    2014-11-01

    Full Text Available Black locust (Robinia pseudoacacia L. is a tree species of high economic and ecological value, but is also considered to be highly invasive. Understanding the global potential distribution and ecological characteristics of this species is a prerequisite for its practical exploitation as a resource. Here, a maximum entropy modeling (MaxEnt was used to simulate the potential distribution of this species around the world, and the dominant climatic factors affecting its distribution were selected by using a jackknife test and the regularized gain change during each iteration of the training algorithm. The results show that the MaxEnt model performs better than random, with an average test AUC value of 0.9165 (±0.0088. The coldness index, annual mean temperature and warmth index were the most important climatic factors affecting the species distribution, explaining 65.79% of the variability in the geographical distribution. Species response curves showed unimodal relationships with the annual mean temperature and warmth index, whereas there was a linear relationship with the coldness index. The dominant climatic conditions in the core of the black locust distribution are a coldness index of −9.8 °C–0 °C, an annual mean temperature of 5.8 °C–14.5 °C, a warmth index of 66 °C–168 °C and an annual precipitation of 508–1867 mm. The potential distribution of black locust is located mainly in the United States, the United Kingdom, Germany, France, the Netherlands, Belgium, Italy, Switzerland, Australia, New Zealand, China, Japan, South Korea, South Africa, Chile and Argentina. The predictive map of black locust, climatic thresholds and species response curves can provide globally applicable guidelines and valuable information for policymakers and planners involved in the introduction, planting and invasion control of this species around the world.

  8. Yield prediction of young black locust (Robinia pseudoacacia L. plantations for woody biomass production using allometric relations

    Directory of Open Access Journals (Sweden)

    Christian Böhm

    2013-12-01

    Full Text Available Black locust (Robinia pseudoacacia L. is an increasingly popular tree species for the production of woody biomass for bioenergy generation with short rotation coppices. Due to its potential to produce large amounts of biomass yields even under unfavourable growth conditions, this tree species is especially suitable for marginal sites, such as can be found in the post mining area of NE-Germany. Current research aims to reliably predict the yield potential of black locust short rotation coppices, but suffers from a lack of sufficient exact allometric functions until recently. This is especially true for the early growth years, which are of special importance for short rotation coppices. The objective of this study was to develop allometric equations based on tree height and shoot basal diameter (SBD for estimating yields of young black locust plantations. Therefore, dendrometric data were collected in a two, three, four and fourteen years old black locust short rotation forest located in the reclamation area of an opencast-lignite mining area in the Lower Lusatian region (Germany and used for equation developing. Until measurement, none of the plantations had been harvested. Closed correlations between SBD and tree height were observed, as well as between these parameters and single tree mass. The scattering of single tree masses could be explained slightly better by the SBD than by the tree height. In the year before a harvest an even better prediction probability of woody biomass was obtainable when both parameters were simultaneously interrelated with the single tree mass. The results illustrate that the woody above ground biomass of young black locust plantations can be estimated sufficiently precisely based on the easy determinable parameters tree height and particularly SBD.

  9. Yield prediction of young black locust (Robinia pseudoacacia L. plantations for woody biomass production using allometric relations

    Directory of Open Access Journals (Sweden)

    Christian Böhm

    2011-11-01

    Full Text Available Black locust (Robinia pseudoacacia L. is an increasingly popular tree species for the production of woody biomass for bioenergy generation with short rotation coppices. Due to its potential to produce large amounts of biomass yields even under unfavourable growth conditions, this tree species is especially suitable for marginal sites, such as can be found in the post mining area of NE-Germany. Current research aims to reliably predict the yield potential of black locust short rotation coppices, but suffers from a lack of sufficient exact allometric functions until recently. This is especially true for the early growth years, which are of special importance for short rotation coppices. The objective of this study was to develop allometric equations based on tree height and shoot basal diameter (SBD for estimating yields of young black locust plantations. Therefore, dendrometric data were collected in a two, three, four and fourteen years old black locust short rotation forest located in the reclamation area of an opencast-lignite mining area in the Lower Lusatian region (Germany and used for equation developing. Until measurement, none of the plantations had been harvested. Closed correlations between SBD and tree height were observed, as well as between these parameters and single tree mass. The scattering of single tree masses could be explained slightly better by the SBD than by the tree height. In the year before a harvest an even better prediction probability of woody biomass was obtainable when both parameters were simultaneously interrelated with the single tree mass. The results illustrate that the woody above ground biomass of young black locust plantations can be estimated sufficiently precisely based on the easy determinable parameters tree height and particularly SBD.

  10. Bacterial endosymbionts of Pyrodinium bahamense var. compressum.

    Science.gov (United States)

    Azanza, Ma Patricia V; Azanza, Rhodora V; Vargas, Vanessa Mercee D; Hedreyda, Cynthia T

    2006-11-01

    The study presents evidence in support of the bacterial theory associated with the toxicity of Pyrodinium bahamense var. compressum. Bacterial endosymbionts from Philippine P. bahamense var. compressum strain Pbc MZRVA 042595 were isolated and identified via 16S rDNA sequence analysis. Taxonomic diversity of the identified culturable intracellular microbiota associated with Philippine P. bahamense var. compressum was established to be limited to the Phyla Proteobacteria, Actinobacteria, and Firmicutes. Major endosymbionts identified included Moraxella spp., Erythrobacter spp., and Bacillus spp., whereas Pseudomonas putida, Micrococcus spp., and Dietzia maris were identified as minor isolates. All identified strains except D. maris, P. putida, and Micrococcus spp. were shown to contain either saxitoxin or neo saxitoxin or both at levels bahamense var. compressum isolated in the Philippines.

  11. FCH_Enveliopsis_nudicaulis_var_corrugata_19850520

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — These data identify, in general, the areas where final critical habitat for the Ash Meadows sunray (Enceliopsis nudicaulis var. corrugata) occur.

  12. Leaf defense system of Robinia pseudoacacia L. seedlings exposed to 3years of elevated atmospheric CO2 and Cd-contaminated soils.

    Science.gov (United States)

    Jia, X; Zhao, Y H; Liu, T; He, Y H

    2017-12-15

    Short-term exposure to elevated CO2 increases cadmium (Cd) uptake in some plant species (wheat, poplars, and willows), which triggers an increase in antioxidative system activity to deal with additional reactive oxygen species that are generated. Here, we examined leaf defenses in Robinia pseudoacacia L. seedlings exposed to elevated CO2+Cd for 3years. Three years of elevated CO2 decreased Cd uptake into leaves and the Cd content in soils and increased the pH of rhizosphere soil relative to ambient CO2. In plants exposed to Cd stress, leaf chlorophyll content was greater under elevated CO2 than under ambient CO2. Superoxide dismutase, peroxidase, and catalase activity increased, glutathione content increased, and malondialdehyde and phytochelatins contents decreased under elevated CO2+Cd relative to Cd alone. Proline, soluble sugars, flavonoids, saponins, and phenolic acids contents were greater under elevated CO2+Cd than under Cd alone, and condensed tannin content was lower. Overall, long-term elevation of CO2 enhanced the leaf defense system of R. pseudoacacia exposed to Cd by stimulating antioxidant enzyme activity, osmotic adjustment, and the production of glutathione, flavonoids and phenolic acids. Future research should focus on understanding the mechanisms involved in the decrease in Cd uptake into leaves and Cd content in soils and the increase in rhizosphere soil pH under long-term exposure to elevated CO2. Copyright © 2017 Elsevier B.V. All rights reserved.

  13. Elevated CO2benefits the soil microenvironment in the rhizosphere of Robinia pseudoacacia L. seedlings in Cd- and Pb-contaminated soils.

    Science.gov (United States)

    Huang, Shuping; Jia, Xia; Zhao, Yonghua; Bai, Bo; Chang, Yafei

    2017-02-01

    Soil contamination by heavy metals in combination with elevated atmospheric CO 2 has important effects on the rhizosphere microenvironment by influencing plant growth. Here, we investigated the response of the R. pseudoacacia rhizosphere microenvironment to elevated CO 2 in combination with cadmium (Cd)- and lead (Pb)-contamination. Organic compounds (total soluble sugars, soluble phenolic acids, free amino acids, and organic acids), microbial abundance and activity, and enzyme activity (urease, dehydrogenase, invertase, and β-glucosidase) in rhizosphere soils increased significantly (p soil microbial community in the rhizosphere. Heavy metals alone resulted in an increase in total soluble sugars, free amino acids, and organic acids, a decrease in phenolic acids, microbial populations and biomass, and enzyme activity, and a change in microbial community in rhizosphere soils. Elevated CO 2 led to an increase in organic compounds, microbial populations, biomass, and activity, and enzyme activity (except for l-asparaginase), and changes in microbial community under Cd, Pb, or Cd + Pb treatments relative to ambient CO 2 . In addition, elevated CO 2 significantly (p soils. Overall, elevated CO 2 benefited the rhizosphere microenvironment of R. pseudoacacia seedlings under heavy metal stress, which suggests that increased atmospheric CO 2 concentrations could have positive effects on soil fertility and rhizosphere microenvironment under heavy metals. Copyright © 2016 Elsevier Ltd. All rights reserved.

  14. Mapping Robinia pseudoacacia forest health in the Yellow River delta by using high-resolution IKONOS imagery and object-based image analysis

    Science.gov (United States)

    Wang, Hong; Lu, Kaiyu; Pu, Ruiliang

    2016-10-01

    The Robinia pseudoacacia forest in the Yellow River delta of China has been planted since the 1970s, and a large area of dieback of the forest has occurred since the 1990s. To assess the condition of the R. pseudoacacia forest in three forest areas (i.e., Gudao, Machang, and Abandoned Yellow River) in the delta, we combined an estimation of scale parameters tool and geometry/topology assessment criteria to determine the optimal scale parameters, selected optimal predictive variables determined by stepwise discriminant analysis, and compared object-based image analysis (OBIA) and pixel-based approaches using IKONOS data. The experimental results showed that the optimal segmentation scale is 5 for both the Gudao and Machang forest areas, and 12 for the Abandoned Yellow River forest area. The results produced by the OBIA method were much better than those created by the pixel-based method. The overall accuracy of the OBIA method was 93.7% (versus 85.4% by the pixel-based) for Gudao, 89.0% (versus 72.7%) for Abandoned Yellow River, and 91.7% (versus 84.4%) for Machang. Our analysis results demonstrated that the OBIA method was an effective tool for rapidly mapping and assessing the health levels of forest.

  15. 4D-Var Developement at GMAO

    Science.gov (United States)

    Pelc, Joanna S.; Todling, Ricardo; Akkraoui, Amal El

    2014-01-01

    The Global Modeling and Assimilation Offce (GMAO) is currently using an IAU-based 3D-Var data assimilation system. GMAO has been experimenting with a 3D-Var-hybrid version of its data assimilation system (DAS) for over a year now, which will soon become operational and it will rapidly progress toward a 4D-EnVar. Concurrently, the machinery to exercise traditional 4DVar is in place and it is desirable to have a comparison of the traditional 4D approach with the other available options, and evaluate their performance in the Goddard Earth Observing System (GEOS) DAS. This work will also explore the possibility for constructing a reduced order model (ROM) to make traditional 4D-Var computationally attractive for increasing model resolutions. Part of the research on ROM will be to search for a suitably acceptable space to carry on the corresponding reduction. This poster illustrates how the IAU-based 4D-Var assimilation compares with our currently used IAU-based 3D-Var.

  16. Forestación de un terreno decapitado con Robinia pseudoacacia inoculada con Rhizobium spp. y Glomus deserticola Afforestation of a desurfaced field with Robinia pseudoacacia inoculated with Rhizobium spp. and Glomus deserticola

    Directory of Open Access Journals (Sweden)

    Alejandro E Ferrari

    2010-07-01

    Full Text Available Los terrenos decapitados constituyen un caso extremo de degradación de suelos aptos para agricultura, con graves consecuencias ambientales. El propósito de este trabajo fue ensayar los efectos de la inoculación de acacia blanca (Robinia pseudoacacia L. con una cepa efectiva de Rhizobium y un hongo de micorrizas arbusculares (Glomus deserticola en la supervivencia y crecimiento temprano de plantas trasplantadas a un terreno decapitado de Balcarce, comparando con fresno como árbol no fijador de nitrógeno. La supervivencia inicial fue muy buena (mayor del 77%, especialmente para los fresnos y las acacias inoculadas, las cuales mostraron significativamente mayor supervivencia al estrés por sequía que las acacias control. Todas las plantas se mostraron igualmente tolerantes al ataque de liebres y al estrés por heladas tardías. Durante el primer año las acacias inoculadas crecieron más rápido que las no inoculadas. En el segundo año las alturas se equipararon en parte, probablemente por la colonización de las acacias control con rizobios o micorrizas naturales del suelo. De todos modos, las acacias inoculadas siempre mostraron valores mayores de los distintos parámetros de desarrollo (altura total, diámetro de la copa y cantidad de ramificaciones que las plantas control, tanto en los sectores poco decapitados como en los más severamente degradados. En conclusión, la doble inoculación previa de acacia blanca mejoró la supervivencia inicial, aumentó tolerancia a la sequía y el crecimiento en 2 años y medio desde la plantación. Esta práctica de manejo sería entonces muy recomendable para reducir el período de vivero en la producción de árboles, así como lograr ejemplares más resistentes y mejor adaptados para proyectos de recuperación de suelos degradados.Many agricultural lands in Buenos Aires Province (Argentina have traditionally been desurfaced for the manufacture of bricks and other building materials. The desurfaced

  17. Hybrid VAR compensator with improved efficiency

    Directory of Open Access Journals (Sweden)

    V. V. Burlaka

    2015-03-01

    Full Text Available In modern electrical networks thyristor-switched capacitors (TSC are most used devices for VAR compensation. These devices don’t contain rotating parts and mechanical contacts, provide a stepwise control of reactive power and no generation of harmonics to the network. However, with the help of TSC it’s not possible to ensure smooth control of reactive power and capacitor banks (CB are exposed to the negative impact of higher harmonic components of the network voltage. Hybrid VAR compensator don’t have such drawbacks. It consists of active filter (AF and capacitor bank with discrete regulation. The main drawback of such systems is the necessity of accessing all six terminals of CB, while most of them are manufactured with three terminals, internally delta-connected. In the article, the topology and control system of hybrid VAR compensator free from beforementioned drawback, is proposed. The control system provides operating modes of overcompensation or undercompensation reactive power. VAR distribution regulator performs redistribution of reactive power between active filter and capacitor banks with the condition to minimize active filter’s power. Scheme of the hybrid VAR compensator, which includes a three-phase three-terminal delta-connected capacitor banks, is shown. Proposed approach allows to provide smooth control of reactive power, isolate the capacitor bank from harmonic currents and use a more effective low-voltage power components

  18. Urease gene of Trichophyton rubrum var. raubitschekii.

    Science.gov (United States)

    Hiruma, Midori; Kano, Rui; Sugita, Takashi; Mochizuki, Takashi; Hasegawa, Atsuhiko; Hiruma, Masataro

    2013-02-01

    The recent description (in GenBank) of a urease-encoding gene from Trichophyton rubrum provides an opportunity to compare this species to the highly similar T. rubrum var. raubitschekii. Therefore, the corresponding genomic DNA was recovered from T. rubrum var. raubitschekii, and the sequence and expression were compared for this urease gene in urease-positive and -negative isolates of T. rubrum and T. rubrum var. raubitschekii. The sequence (2371 bp) of the T. rubrum var. raubitschekii urease gene revealed the presence of three exons. Except for a three-amino acid insertion, the predicted proteins were identical, but demonstrated protein identity of approximately 70% compared to an Arthroderma gypseum homolog. Reverse transcription polymerase chain reaction analysis revealed the presence of a corresponding transcript in both urease-positive T. rubrum var. raubitschekii isolates examined; the same analysis did not detect this transcript in urease-negative isolates of T. rubrum. © 2012 Japanese Dermatological Association.

  19. Efficacy of Bacillus thuringiensis var israelinsis (Bti) on Culex and ...

    African Journals Online (AJOL)

    Laboratory based experiments were conducted using Bacillus thuringiensis var israelinsis (Bti) to establish ... In some countries Bacillus thuringiensis var israelinsis (Bti) is used as a means of controlling mosquitoes ...... israelinsis and Bacillus sphaericus formulations against Afrotropical anophelines in western Kenya.

  20. Bolívar, educador de pueblos

    Directory of Open Access Journals (Sweden)

    Guillermo Hernández de Alba

    1980-06-01

    Full Text Available Una tarde del mes de septiembre de 1810, en la residencia de la calle Grafton, hogar del Precursor don Francisco de Miranda, el Embajador de la Capitanía General de Venezuela en Londres, Coronel don Simón Bolívar, escucha entusiasmado de labios del fogoso innovador de la pedagogía, don José Lancaster, la exposición de su nuevo sistema educativo Con esa su vivacidad característica caen sobre Bolívar las nuevas inolvidables impresiones que un día se harán palpables dentro del pensamiento educativo del gran Libertador.

  1. The Effect of Different Temperatures and Durations on the Dormancy Breaking of Black Locust (Robinia pseudoacacia L. and Honey Locust (Gleditsia triacanthos L. Seeds

    Directory of Open Access Journals (Sweden)

    Mehmet BASBAG

    2010-12-01

    Full Text Available In order to break seed dormancy, different temperatures (20, 30, 40, 50, 60, 70, 80 and 90o C and durations (10, 20 and 30 minutes were applied to black locust (Robinia pseudoacacia L. and honey locust (Gleditsia triacanthos L. seeds, in the Seed Laboratory of Dicle University - Faculty of Agriculture in 2009. According to the research results, the highest germination rate for black locust seeds was obtained in the case of 90o C for 30 minutes pre-treatment (94.5%, whilst the lowest value was obtained for the 40o C for 10 minutes pre-treatment (7.5.0%. For honey locust the highest value was obtained at 50o C for 30 minutes (25.5% and the lowest value was obtained in the case of control sample (6.8%.

  2. Correlation between air pollution and crystal pattern of calcium oxalate in plant leaves of street trees in Itami City. [Ginkgo biloba; Salix babylonica; Aphananthe aspera; Robinia pseudoacacia

    Energy Technology Data Exchange (ETDEWEB)

    Umemoto, K.; Tatsumi, S.

    1975-01-01

    A characteristic difference in calcium oxalate crystal patterns in leaves of roadside trees planted in relatively unpolluted northern parts of Itami City and in parts of the city polluted by automobile exhaust was discovered. The species of trees examined were Ginkgo biloba, Salix babylonica, Aphananthe aspera, Robinia pseudoacacia, and Poplar. The leaves of trees grown in relatively less air polluted areas displayed crystal aggregates of calcium oxalate (50-80 micron) that were arranged in rows on both sides of the central vein; some scattered crystal aggregates between veins were observed. Trees grown in air polluted areas showed irregular crystal patterns and more scattering of the crystals between veins. The cause of the observed differences in the pattern of crystal aggregates was attributed to the difference in metabolism of trees under different environmental conditions. Air pollutants disturb the normal metabolism of the tree and cause hyperproduction of calcium oxalate.

  3. Haavelmo's Probability Approach and the Cointegrated VAR

    DEFF Research Database (Denmark)

    Juselius, Katarina

    dependent residuals, normalization, reduced rank, model selection, missing variables, simultaneity, autonomy and iden- ti…cation. Speci…cally the paper discusses (1) the conditions under which the VAR model represents a full probability formulation of a sample of time-series observations, (2...

  4. Bioethanol production by immobilized Sacharomyces cerevisiae var ...

    African Journals Online (AJOL)

    The aim of the present study was to investigate the immobilization of Sacharomyces cerevisiae var. ellipsoideus yeast cells for bioethanol production from corn meal hydrolyzates. For this purpose the biocompatible polymers such as polyvinil alcohol (PVA) and Ca-alginate were assessed. The parameters of ethanol ...

  5. Volatiles Of Lysimachia Paridiformis Var. Stenophylla, Lysimachia ...

    African Journals Online (AJOL)

    Stenophylla, accounting for 89.17% of the total volatile fraction. The main constituents were ethanol (13.58%), and β-ionone (8.05%). linalool and β-ionone were the main aroma constituents in L. paridiformis var. Stenophylla. Twenty-one compounds were identified in the leaves of L. fortumei, accounting for 94.72% of the ...

  6. Bolívar no fue volteriano

    Directory of Open Access Journals (Sweden)

    Miguel Aguilera

    1961-07-01

    Full Text Available Al comentar la personalidad religiosa de Bolívar, se refieren algunos escritores a la influencia filosófica que sobre su inteligencia ejerció el enciclopedista Voltaire. La frecuencia con que se cita este nombre me ha inducido a indagar cuidadosamente el fundamento de aquella afirmación.

  7. Plant regeneration of Senecio hypochionaeus var. argaeus

    African Journals Online (AJOL)

    GREGORY

    2011-05-02

    May 2, 2011 ... Turkey. E-mail: haticecolgecen@gmail.com or colgecen@karaelmas.edu.tr. Accepted 28 April, 2011. Senecio genus includes taxa that can be used for agricultural, pharmacological, ... var. argaeus is an endemic species in Turkey. .... their pappus region by cutting, and the other group of seeds was.

  8. Bioethanol production by immobilized Sacharomyces cerevisiae var ...

    African Journals Online (AJOL)

    STORAGESEVER

    2009-02-04

    Feb 4, 2009 ... Bioethanol production by immobilized Sacharomyces cerevisiae var. ellipsoideus cells. Marica Rakin1*, Ljiljana Mojovic1, Svetlana Nikolic1 Maja Vukasinovic1 and Viktor Nedovic2. 1Department of Biochemical Engineering and Biotechnology, Faculty of Technology and Metallurgy Karnegijeva 4,. 11000 ...

  9. What is Orobanche haenseleri var. deludens Beck?

    Directory of Open Access Journals (Sweden)

    Pujadas Salvà, Antonio J.

    2004-12-01

    Full Text Available Orobanche haenseleri var. deludens Beck (Orobanchaceae, a problematic taxon described from Algeciras (Cádiz, S Spain is here identified after studying the original material of Wolley-Dod (BM 4476. It is considered to be the same as O. austrohispanica M.J.Y. Foley and better included, as a variety, under O. gracilis Sm. The new combination O. gracilis var. deludens (Beck A. Pujadas is consequently proposed. It mainly parasites Ulex (Fabaceae in the western Mediterranean Region (Iberian Peninsula and NW Africa.Se identifica Orobanche haenseleri var. deludens Beck (Orobanchaceae, un taxon conflictivo descrito de Algeciras (Cádiz, sur de España, a partir del análisis del material original de Wolley-Dod (BM 4476. Se considera que es lo mismo que O. austrohispanica M.J.Y. Foley, y se incluye en O. gracilis Sm. con rango varietal. Se propone la nueva combinación O. gracilis var. deludens (Beck A. Pujadas. Parasita principalmente a especies del género Ulex (Fabaceae en la Región Mediterránea Occidental (Península Ibérica y noroeste de África.

  10. [Arbuscular mycorrhizae in Paris polyphylla var. yunnanensis].

    Science.gov (United States)

    Zhou, Nong; Xia, Conglong; Jiang, Bei; Bai, Zhichuan; Liu, Guangming; Ma, Xiaokuang

    2009-07-01

    To study the infection situation of arbuscular mycorrhizal fungi, as well as the mycorrhizal structures of Paris polyphylla var. yunnanensis, and the main types and quantities of AMF spores in rhizosphere soil. The arbuscular mycorrhizal of P. polyphylla var. yunnanensis were detected by Phillips and Hayman staining. At the same time, some AMF spores were accessed by Gendemann's Wet-screening method and identified by their morphological characteristics. Arbuscular mycorrhizal fungi could infect the roots of P. polyphylla var. yunnanensis and formed arbuscular mycorrhizal. Infection rate was from 35.3% to 98.6%, indicating that infection strength was strong. From 10 soil samples collected in Yunnan, 11 Acaulospor species, 7 Glomus species, 3 Gigaspora species and 3 Scutellospora species were isolated and identified, including Acaulospora appendicola, A. brieticulata, A. excavata, A. foveata, A. lacunosa, A. laevis, A. koskei, A. myriocarpa, A. polonica, A. rehmii, A. scrobiculata, Glomus albidum, G. ambisporum, G. deserticola, G. fragarioides, G. luteum, G. microaggregatum, G. multiforum, Gigaspora albida, G. margarita, G. ramisporophora, Scutellospora calospora, S. pellucida and S. gilmorei. Among them, Acaulospora brieticulata was advantage species. AMF may be a potent biological resource which can stimulate the growth of P. polyphylla var. yunnanensis.

  11. Optimisation of biomass productivity of black locust (Robinia pseudoacacia L.) on marginal lands - a case study in Lower Lusatia, NE Germany

    Science.gov (United States)

    Seserman, Diana-Maria; Veste, Maik; Freese, Dirk

    2017-04-01

    The profitability of reclaiming post-mining areas depends on the tree biomass productivity and the restoration of ecosystem functions, such as improving soil and water quality. Agroforestry systems, regarded as combined land-use systems of trees and crops, have the ability to facilitate soil development while reducing wind speed, soil erosion and evaporation. Achieving the maximum biomass productivity of the tree stands depends on the corresponding soil conditions and water availability, but is also influenced by stand structure and the competition between individual trees. For this purpose, black locust (Robinia pseudoacacia L.) trees were planted in a Nelder design in 2010, on a reclaimed post-mining site of the open-cast lignite mining in Welzow Süd (Brandenburg, Germany). Black locust is regarded as a drought-adapted tree species and commonly used for the reclamation of former lignite mining sites in Lower Lusatia, Germany. The Nelder design encompasses angles of arc of equal measure and with the same origin traversed by successive circumferences set at a predefined radial distance. Accordingly, a total of 1071 trees were planted in Welzow Süd at the intersection between 63 spokes and 17 circumferences and at densities ranging from 0.4 to 8.0 m2, with the aim of examining the influence of stand density on the tree growth in a timeframe of six years. In order to evaluate the biomass production of the trees and to determine an optimal planting density on a marginal land, various scenarios were assessed with the help of the Yield-SAFE model, a parameter-sparse process-based agroforestry model. The study revealed the consequences of choosing different tree densities on the tree biomass productivity and water use of trees in relation to the competition for light and water. References Keesman KJ, van der Werf W, van Keulen H, 2007. Production ecology of agroforestry systems: A minimal mechanistic model and analytical derivation of the land equivalent ratio

  12. Mapping Robinia Pseudoacacia Forest Health Conditions by Using Combined Spectral, Spatial, and Textural Information Extracted from IKONOS Imagery and Random Forest Classifier

    Directory of Open Access Journals (Sweden)

    Hong Wang

    2015-07-01

    Full Text Available The textural and spatial information extracted from very high resolution (VHR remote sensing imagery provides complementary information for applications in which the spectral information is not sufficient for identification of spectrally similar landscape features. In this study grey-level co-occurrence matrix (GLCM textures and a local statistical analysis Getis statistic (Gi, computed from IKONOS multispectral (MS imagery acquired from the Yellow River Delta in China, along with a random forest (RF classifier, were used to discriminate Robina pseudoacacia tree health levels. Specifically, eight GLCM texture features (mean, variance, homogeneity, dissimilarity, contrast, entropy, angular second moment, and correlation were first calculated from IKONOS NIR band (Band 4 to determine an optimal window size (13 × 13 and an optimal direction (45°. Then, the optimal window size and direction were applied to the three other IKONOS MS bands (blue, green, and red for calculating the eight GLCM textures. Next, an optimal distance value (5 and an optimal neighborhood rule (Queen’s case were determined for calculating the four Gi features from the four IKONOS MS bands. Finally, different RF classification results of the three forest health conditions were created: (1 an overall accuracy (OA of 79.5% produced using the four MS band reflectances only; (2 an OA of 97.1% created with the eight GLCM features calculated from IKONOS Band 4 with the optimal window size of 13 × 13 and direction 45°; (3 an OA of 93.3% created with the all 32 GLCM features calculated from the four IKONOS MS bands with a window size of 13 × 13 and direction of 45°; (4 an OA of 94.0% created using the four Gi features calculated from the four IKONOS MS bands with the optimal distance value of 5 and Queen’s neighborhood rule; and (5 an OA of 96.9% created with the combined 16 spectral (four, spatial (four, and textural (eight features. The most important feature ranked by RF

  13. Analysis list: Su(var)205 [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Su(var)205 Adult,Embryo,Larvae + dm3 http://dbarchive.biosciencedbc.jp/kyushu-u/dm3.../target/Su(var)205.1.tsv http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/target/Su(var)205.5.tsv http://dbarchive.bioscience...dbc.jp/kyushu-u/dm3/target/Su(var)205.10.tsv http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/c...olo/Su(var)205.Adult.tsv,http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/colo/Su(v...ar)205.Embryo.tsv,http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/colo/Su(var)205.Larvae.tsv http://dbarchive.bioscience

  14. The influence of liming on soil chemical properties and on the alleviation of manganese and copper toxicity in Juglans regia, Robinia pseudoacacia, Eucalyptus sp. and Populus sp. plantations.

    Science.gov (United States)

    Chatzistathis, T; Alifragis, D; Papaioannou, A

    2015-03-01

    Juglans regia, Robinia pseudoacacia, Eucalyptus sp. and Populus sp. plantations, suffering from Mn and Cu toxicity, were limed in order to reduce Cu and Mn solubility in soil. The purposes of the present work were: i) to study the changes in soil chemical properties after the addition of CaCO3, ii) to investigate the influence of liming on the reduction of Mn and Cu toxicity. After the addition of CaCO3 (three applications, during three successive years), pH and CaCO3 content were significantly increased, while organic C and N were significantly reduced. Exchangeable Ca concentrations have been slightly, or significantly, increased, while those of Mg have been decreased; in addition, ratios Ca/Mg and C/N have been significantly increased after liming. Impressive reductions of DTPA extractable Cu and Mn concentrations (more than 10 times in most cases) were recorded. It was also found that trees without Mn and Cu toxicity symptoms (healthy tress) before liming did not have, in many cases, significantly greater leaf Mn, Cu and Fe concentrations, than trees after soil liming (all the trees were healthy). This probably happened because excess Mn and Cu quantities had been accumulated into their root system. Finally, leaf Mn, Cu and Zn concentrations of trees suffering from toxicity were significantly decreased after soil liming, while leaf Fe concentrations, in all the plant species studied, were increased. Copyright © 2014 Elsevier Ltd. All rights reserved.

  15. Deep phenotyping of coarse root architecture in R. pseudoacacia reveals that tree root system plasticity is confined within its architectural model.

    Directory of Open Access Journals (Sweden)

    Frédéric Danjon

    Full Text Available This study aims at assessing the influence of slope angle and multi-directional flexing and their interaction on the root architecture of Robinia pseudoacacia seedlings, with a particular focus on architectural model and trait plasticity. 36 trees were grown from seed in containers inclined at 0° (control or 45° (slope in a glasshouse. The shoots of half the plants were gently flexed for 5 minutes a day. After 6 months, root systems were excavated and digitized in 3D, and biomass measured. Over 100 root architectural traits were determined. Both slope and flexing increased significantly plant size. Non-flexed trees on 45° slopes developed shallow roots which were largely aligned perpendicular to the slope. Compared to the controls, flexed trees on 0° slopes possessed a shorter and thicker taproot held in place by regularly distributed long and thin lateral roots. Flexed trees on the 45° slope also developed a thick vertically aligned taproot, with more volume allocated to upslope surface lateral roots, due to the greater soil volume uphill. We show that there is an inherent root system architectural model, but that a certain number of traits are highly plastic. This plasticity will permit root architectural design to be modified depending on external mechanical signals perceived by young trees.

  16. Comparison of hydrodistillation and ultrasonic solvent extraction for the isolation of volatile compounds from two unifloral honeys of Robinia pseudoacacia L. and Castanea sativa L.

    Science.gov (United States)

    Jerković, I; Mastelić, J; Marijanović, Z; Klein, Z; Jelić, M

    2007-09-01

    A comparative study of ultrasound-assisted extraction (USE) with the mixture pentane:ether (1:2) and hydrodistillation (HD) with the same trapping mixture is presented for the isolation of volatile compounds from two unifloral honeys of Robinia pseudoacacia L. and Castanea sativa L. All HD isolates contained many thermally derived artefacts (especially phenylacetaldehyde with lower percentages of furfural, cis- and trans-linalool oxides and others). USE method gave the most representative profile of all honey volatiles (without artefacts). In addition, USE enabled extraction of low molecular weight semivolatile markers (especially benzoic, vanillic and phenylacetic acids) that were not extracted by HD. In this regard, low percentage of benzoic acid (0.7-7.4%), vanillic acid (0.0-1.6%) and phenylacetic acid (0.5-4.1%) was determined in Rp USE extracts, while Cs USE extracts contained phenylacetic acid (20.2-23.5%) as the major constituent with low percentage of benzoic acid (2.5-5.5%).

  17. Short-term effect of elevated CO2 concentration (0.5%) on mitochondria in diploid and tetraploid black locust (Robinia pseudoacacia L.).

    Science.gov (United States)

    Xu, Fuling; Jiang, Mingquan; Meng, Fanjuan

    2017-07-01

    Recent increases in atmospheric CO 2 concentration have affected the growth and physiology of plants. In this study, plants were grown with 0.5% CO 2 for 0, 3, and 6 days. The anatomy, fluorescence intensity of H2O2, respiration rate, and antioxidant activities of the mitochondria were analyzed in diploid (2×) and tetraploid (4×) black locust (Robinia pseudoacacia L.). Exposure to 0.5% CO 2 resulted in clear structural alterations and stomatal closure in the mitochondria. Reduced membrane integrity and increased structural damage were observed in 2× plants at 6 days. However, after 0.5% CO 2 treatment, little structural damage was observed in 4× plants. Under severe stress, H2O2 and malondialdehyde were dramatically induced in both 2× and 4× plants. Proline remains unchanged at an elevated CO 2 concentration in 4× plants. Moreover, the total respiration and alternative respiration rates decreased in both 2× and 4× plants. In contrast, the cytochrome pathway showed no decrease in 2× plants and even increased slightly in 4× plants. The antioxidant enzymes and nonenzymatic antioxidants, which are related to the ascorbate-glutathione pathway, were inhibited following CO 2 exposure. These analyses indicated that 4× and 2× plants were damaged by 0.5% CO 2 but the former were more resistant than the latter, and this may be due to increases in antioxidant enzymes and nonenzymatic antioxidants and stabilized membrane structure.

  18. Allometric Models to Predict Aboveground Woody Biomass of Black Locust (Robinia pseudoacacia L. in Short Rotation Coppice in Previous Mining and Agricultural Areas in Germany

    Directory of Open Access Journals (Sweden)

    Christin Carl

    2017-09-01

    Full Text Available Black locust is a drought-resistant tree species with high biomass productivity during juvenility; it is able to thrive on wastelands, such as former brown coal fields and dry agricultural areas. However, research conducted on this species in such areas is limited. This paper aims to provide a basis for predicting tree woody biomass for black locust based on tree, competition, and site variables at 14 sites in northeast Germany that were previously utilized for mining or agriculture. The study areas, which are located in an area covering 320 km × 280 km, are characterized by a variety of climatic and soil conditions. Influential variables, including tree parameters, competition, and climatic parameters were considered. Allometric biomass models were employed. The findings show that the most important parameters are tree and competition variables. Different former land utilizations, such as mining or agriculture, as well as growth by cores or stumps, significantly influenced aboveground woody biomass production. The new biomass models developed as part of this study can be applied to calculate woody biomass production and carbon sequestration of Robinia pseudoacacia L. in short rotation coppices in previous mining and agricultural areas.

  19. Cardenolide glycosides from Elaeodendron australe var. integrifolium.

    Science.gov (United States)

    Butler, Mark S; Towerzey, Leanne; Pham, Ngoc B; Hyde, Edward; Wadi, Sao Khemar; Guymer, Gordon P; Quinn, Ronald J

    2014-02-01

    Extracts from dried leaf and stems of Elaeodendron australe var. integrifolium (Celastraceae) collected in South East Queensland, Australia, were active in an assay that measured Ca(2+) driven expression of IL-2/luciferase designed to identify inhibitors of the ICRAC channel. Bioassay-guided isolation using C18 and polyamide column chromatography, HPLC (Phenyl and C18) and centrifugal partition chromatography (CPC) led to the isolation of digitoxigenin (1) and three cardenolide glycosides, glucoside 2, quinovoside 3 and the new natural product xyloside 4, as the active components with low nM activity in the reporter assay. Copyright © 2013 Elsevier Ltd. All rights reserved.

  20. Chemical composition of essential oil of Psidium cattleianum var ...

    African Journals Online (AJOL)

    The aim of this study was to investigate the essential oil composition of Psidium cattleianum var. lucidum from South Africa. The essential oils were extracted by ... The presence of many terpenic and ester compounds is thought to contribute to the unique flavor of the P. cattleianum var. lucidum leaves. Keywords: Psidium ...

  1. Larvicidal Activity of Isodon japonicus var. glaucocalyx (Maxim ...

    African Journals Online (AJOL)

    HP

    Purpose: To determine the larvicidal activity of the essential oil derived from Isodon japonicus var. glaucocalyx (Maxim.) H.W.Li ... Keywords: Isodon japonicus var. glaucocalyx, Aedes aegypti, Larvicidal activity, Mosquito, Essential oil. Tropical Journal of ..... 48.6 µg/mL; G. scabra leaves, LC50 = 98.6. µg/mL; G. silvatica ...

  2. Immunogenic Properties of Ricinus Communis Var Minor Seed on ...

    African Journals Online (AJOL)

    The immunogenic properties of Ricinus communis var minor seed was determined after feeding 7 healthy virgin albino white rabbits with varying doses of 0.5g – 0.9g dried ground Ricinus communis var minor seed included in their feed (5g/100g body weight). Booster doses of the same weight were further administered ...

  3. VaR Methodology Application for Banking Currency Portfolios

    Directory of Open Access Journals (Sweden)

    Daniel Armeanu

    2007-02-01

    Full Text Available VaR has become the standard measure that financial analysts use to quantify market risk. VaR measures can have many applications, such as in risk management, to evaluate the performance of risk takers and for regulatory requirements, and hence it is very important to develop methodologies that provide accurate estimates. In particular, the Basel Committee on Banking Supervision at the Bank for International Settlements imposes to financial institutions such as banks and investment firms to meet capital requirements based on VaR estimates. In this paper we determine VaR for a banking currency portfolio and respect rules of National Bank of Romania regarding VaR report.

  4. Chemical diversity of volatiles of Teucrium orientale L. var. orientale, var. puberulens, and var. glabrescens determined by simultaneous GC-FID and GC/MS techniques.

    Science.gov (United States)

    Ozek, Gulmira; Ozek, Temel; Dinç, Muhittin; Doǧu, Süleyman; Başer, Kemal H C

    2012-06-01

    In the present work, three varieties of Teucrium orientale, var. orientale, var. puberulens, and var. glabrescens, were collected and investigated for chemical composition of the oils. Subsequent gas chromatography (GC-FID) and gas chromatography coupled to mass spectrometry (GC/MS) revealed high abundance of sesquiterpenes in the essential oils analyzed. All the oils contained β-caryophyllene (22.6, 8.5, and 6.3%, resp.) and hexadecanoic acid (7.9, 12.8, and 13.1%). Germacrene D (24.6 and 33.4%) and bicyclogermacrene (6.7 and 8.5%) were found to be the main constituents of var. orientale and var. puberulens, respectively. The high percentages of β-cubebene (26.9%), α-cubebene (9.0%), and α-copaene (7.2%) established the diversity of var. glabrescens. The qualitative difference between the essential oils allowed the differentiation between the varieties in agreement with the morphological observations described in Flora of Turkey for each variety studied. In addition, a cluster analysis of twelve Teucrium taxa based on the essential-oil composition has been carried out. Hovewer, the analysis did not clearly reflect the infrageneric classification of the genus, it largely confirmed the relationships between the infraspecific taxa of Teucrium orientale and T. chamaedrys. Copyright © 2012 Verlag Helvetica Chimica Acta AG, Zürich.

  5. Impact of P fertilisation on the growth performance of black locust (Robinia pseudoacacia L. in a lignite post-mining area in Germany

    Directory of Open Access Journals (Sweden)

    Michael Kanzler

    2015-04-01

    Full Text Available Due to its ability to grow on marginal sites black locust (Robinia pseudoacacia L. has been widely planted as a short rotation coppice (SRC system that produce a renewable biomass feedstock in several post-mining areas of East Germany. However, as most of these sites are still in an initial stage of reclamation with low humus and nutrient contents, phosphorous can play a significant role as a plant limiting factor, because legumes require more P than other plants for their development. In April 2011, two experiments were conducted to evaluate the influence of higher rates and different applications of phosphorus fertiliser on the nutrition, survival, and biomass production of two different-aged black locust SRC plantations on the post lignite-mining site “Welzow-Süd”, situated in NE Germany. Treatments were applied as triple superphosphate (30, 60 and 120 kg P ha-1 and PK fertiliser (60 kg P ha-1 through broadcasting or banding on recently harvested or planted trees, respectively. Soil, leaf and woody biomass data were analysed utilising the Mann-Whitney U test and the Spearman correlation coefficient (rS. Following two growing seasons, it was observed that the total dry weight yields of the black locust seedlings were increased strongly by up to 8 times when compared to the control group, particularly when TSP was applied through banding. P fertilisation, however, did not affect the biomass yield of six-year-old black locust trees, but P concentration in leaves among treatments of both sites was still significantly increased and sufficient from a quantity upwards of 60 kg P ha-1. Taken together, a comparably moderate amount of P fertiliser (60 kg ha-1 had a strong impact on P uptake and growth performance in the examined black locust seedlings, which reveals a high potential to improve the current fertilisation practices for SRC black locust plantations grown on our research site.

  6. Elevated CO2increases glomalin-related soil protein (GRSP) in the rhizosphere of Robinia pseudoacacia L. seedlings in Pb- and Cd-contaminated soils.

    Science.gov (United States)

    Jia, Xia; Zhao, Yonghua; Liu, Tuo; Huang, Shuping; Chang, Yafei

    2016-11-01

    Glomalin-related soil protein (GRSP), which contains glycoproteins produced by arbuscular mycorrhizal fungi (AMF), as well as non-mycorrhizal-related heat-stable proteins, lipids, and humic materials, is generally categorized into two fractions: easily extractable GRSP (EE-GRSP) and total GRSP (T-GRSP). GRSP plays an important role in soil carbon (C) sequestration and can stabilize heavy metals such as lead (Pb), cadmium (Cd), and manganese (Mn). Soil contamination by heavy metals is occurring in conjunction with rising atmospheric CO 2 in natural ecosystems due to human activities. However, the response of GRSP to elevated CO 2 combined with heavy metal contamination has not been widely reported. Here, we investigated the response of GRSP to elevated CO 2 in the rhizosphere of Robinia pseudoacacia L. seedlings in Pb- and Cd-contaminated soils. Elevated CO 2 (700 μmol mol -1 ) significantly increased T- and EE- GRSP concentrations in soils contaminated with Cd, Pb or Cd + Pb. GRSP contributed more carbon to the rhizosphere soil organic carbon pool under elevated CO 2  + heavy metals than under ambient CO 2 . The amount of Cd and Pb bound to GRSP was significantly higher under elevated (compared to ambient) CO 2 ; and elevated CO 2 increased the ratio of GRSP-bound Cd and Pb to total Cd and Pb. However, available Cd and Pb in rhizosphere soil under increased elevated CO 2 compared to ambient CO 2 . The combination of both metals and elevated CO 2 led to a significant increase in available Pb in rhizosphere soil compared to the Pb treatment alone. In conclusion, increased GRSP produced under elevated CO 2 could contribute to sequestration of soil pollutants by adsorption of Cd and Pb. Copyright © 2016 Elsevier Ltd. All rights reserved.

  7. Growth and Yield of Black Locust (Robinia pseudoacacia L. Stands in Nyírség Growing Region (North-East Hungary

    Directory of Open Access Journals (Sweden)

    Károly Rédei

    2014-06-01

    Full Text Available Background and Purpose: In Hungary the black locust (Robinia pseudoacacia L. can be considered as the most important fast-growing stand-forming exotic tree species. Due to its favourite growing technological characteristics as well as its wood utilization possibilities the present area occupied by black locust stands amounts to 460 thousand hectares. Of its growing districts Nyírség (North-East Hungary has a distinguished importance where the area of black locust stands is appr. 22 700 hectares. The Nyírség region can also be considered as one of the best black locust growing regions in the Carpathian basin. To determine their growth rate and yield as exact as possible a local numerical yield table has been constructed on the basis of surveys of the experimental plots established in pure, managed black locust stands. Material and Methods: The local black locust yield table was constructed from data gathered on 105 sampling plots with average area of 1 000 m2. The total area of the experimental plots was 9.295 ha. In the course of the stand surveys the key stand characteristics were measured, and then, on the basis of data collected, were calculated the average height, diameter (DBH, volume, basal area and stem number given separately for the main (remaining, secondary (removal and total stands per hectare. Results and Conclusion: Black locust yield table presented in this paper is the first local one in the history of the Hungarian black locust research. The programmable editing procedure allows extension and formal change of information content of the yield table according to different demands. This type of yield tables (standards somewhat reflects the local growing-technological (forest tending characteristics better way, on the other hand refer to the trend of quality and quantity changing of black locust stands growing in a given area.

  8. How ecosystems change following invasion by Robinia pseudoacacia: Insights from soil chemical properties and soil microbial, nematode, microarthropod and plant communities.

    Science.gov (United States)

    Lazzaro, Lorenzo; Mazza, Giuseppe; d'Errico, Giada; Fabiani, Arturo; Giuliani, Claudia; Inghilesi, Alberto F; Lagomarsino, Alessandra; Landi, Silvia; Lastrucci, Lorenzo; Pastorelli, Roberta; Roversi, Pio Federico; Torrini, Giulia; Tricarico, Elena; Foggi, Bruno

    2017-10-17

    Biological invasions are a global threat to biodiversity. Since the spread of invasive alien plants may have many impacts, an integrated approach, assessing effects across various ecosystem components, is needed for a correct understanding of the invasion process and its consequences. The nitrogen-fixing tree Robinia pseudoacacia (black locust) is a major invasive species worldwide and is used in forestry production. While its effects on plant communities and soils are well known, there have been few studies on soil fauna and microbes. We investigated the impacts of the tree on several ecosystem components, using a multi-trophic approach to combine evidence of soil chemical properties and soil microbial, nematode, microarthropod and plant communities. We sampled soil and vegetation in managed forests, comparing those dominated by black locust with native deciduous oak stands. We found qualitative and quantitative changes in all components analysed, such as the well-known soil nitrification and acidification in stands invaded by black locust. Bacterial richness was the only component favoured by the invasion. On the contrary, abundance and richness of microarthropods, richness of nematodes, and richness and diversity of plant communities decreased significantly in invaded stands. The invasion process caused a compositional shift in all studied biotic communities and in relationships between the different ecosystem components. We obtained clear insights into the effects of invasion of managed native forests by black locust. Our data confirms that the alien species transforms several ecosystem components, modifying the plant-soil community and affecting biodiversity at different levels. Correct management of this aggressive invader in temperate forests is urgently required. Copyright © 2017 Elsevier B.V. All rights reserved.

  9. Bello y Bolívar

    Directory of Open Access Journals (Sweden)

    Rafael Gómez Hoyos

    1965-09-01

    Full Text Available Hay dos nombres en la historia de América, aprestigiados por la fama, y asociados, sin previo acuerdo y por caminos diferentes, a una empresa común y a una vocación conjunta, integradora de la libertad en sus dos formas sustantivas: la intelectual y la política. Bello y Bolívar componen aquel binomio egregio que confluye en un designio heroico de acción humana intensa, fecunda e ilimitada, con la persuación luminosa de que la cultura y la independencia son procesos orientados a la dicha de sus compatriotas y al triunfo del espíritu.

  10. Housing and the Great Recession : a VAR accounting exercise

    OpenAIRE

    Samuel E. Henly; Alexander L. Wolman

    2011-01-01

    We use a vector autoregression (VAR) for the components of gross domestic product (GDP) to conduct some sectoral and temporal accounting for the current recession. It is obvious that housing played an important role in the current recession, but residential investment declined for two years before GDP declined. According to the VAR, the level of GDP in the second quarter of 2009---the trough of the decline in GDP---was close to but above the level implied by the estimated sequence of VAR inno...

  11. Experimental evidence for negative turgor pressure in small leaf cells of Robinia pseudoacacia L versus large cells of Metasequoia glyptostroboides Hu et W.C.Cheng. 1. Evidence from pressure-volume curve analysis of dead tissue.

    Science.gov (United States)

    Yang, Dongmei; Pan, Shaoan; Ding, Yiting; Tyree, Melvin T

    2017-03-01

    This paper provides a mini-review of evidence for negative turgor pressure in leaf cells starting with experimental evidence in the late 1950s and ending with biomechanical models published in 2014. In the present study, biomechanical models were used to predict how negative turgor pressure might be manifested in dead tissue, and experiments were conducted to test the predictions. The main findings were as follows: (i) Tissues killed by heating to 60 or 80 °C or by freezing in liquid nitrogen all became equally leaky to cell sap solutes and all seemed to pass freely through the cell walls. (ii) Once cell sap solutes could freely pass the cell walls, the shape of pressure-volume curves was dramatically altered between living and dead cells. (iii) Pressure-volume curves of dead tissue seem to measure negative turgor defined as negative when inside minus outside pressure is negative. (iv) Robinia pseudoacacia leaves with small palisade cells had more negative turgor than Metasequoia glyptostroboides with large cells. (v) The absolute difference in negative turgor between R. pseudoacacia and M. glyptostroboides approached as much as 1.0 MPa in some cases. The differences in the manifestation of negative turgor in living versus dead tissue are discussed. © 2016 John Wiley & Sons Ltd.

  12. Black locus (Robinia pseudoacacia L.) and Honey locust (Gleditsia triacanthos L.): technological aspects in relation with the use in solid wood products; Acaia blanca (Robinia pseudoacacia L.) y acacia negra (Gleditsia triacanthos L.): aspectos tecnologicos y relacionados al empleo en productos de madera maciza

    Energy Technology Data Exchange (ETDEWEB)

    Keil, G.; Spavento, E.; Murace, M.; Millanes, A.

    2011-07-01

    Robinia pseudoacacia L. and Gleditsia triacanthos L, are tree species from USA and both was introduced in Europe. In the province of Buenos Aires, Argentina, plantations of these species are scattered, whose wood hasn't been characterized technologically by standardized tests. The objective of this job was to characterize technologically Black locus and Honey locust woods, both implanted in the province of Buenos Aires for its inclusion in the timber market. The physical and mechanical properties determined were: content humidity, apparent densities, dimensional changes, Janka hardness, static bending, cut parallel to fibers,compression perpendicular and parallel to fibers. Natural durability was estimated. Black locus and Honey locust woods were medium density and medium stability, hard, resistant to the cut and the compression perpendicular to fibers and showed values medium to low in parameters of static bending and compression parallel to fibers, values to take into account when designing structural elements. Black locus was the most resistant to fungal degradation. Both woods can be considered suitable for high-value uses in the construction and furniture industries (interior and exterior). (Author) 29 refs.

  13. ClinVar data parsing [version 1; referees: 2 approved

    Directory of Open Access Journals (Sweden)

    Xiaolei Zhang

    2017-05-01

    Full Text Available This software repository provides a pipeline for converting raw ClinVar data files into analysis-friendly tab-delimited tables, and also provides these tables for the most recent ClinVar release. Separate tables are generated for genome builds GRCh37 and GRCh38 as well as for mono-allelic variants and complex multi-allelic variants. Additionally, the tables are augmented with allele frequencies from the ExAC and gnomAD datasets as these are often consulted when analyzing ClinVar variants. Overall, this work provides ClinVar data in a format that is easier to work with and can be directly loaded into a variety of popular analysis tools such as R, python pandas, and SQL databases.

  14. VAr reserve concept applied to a wind power plant

    DEFF Research Database (Denmark)

    Martinez, Jorge; Kjær, Philip C.; Rodriguez, Pedro

    2011-01-01

    Larger percentages of wind power penetration translate into more demanding requirements from the grid codes; for example voltage support at the point of connection has been introduced recently by several grid codes from around the world, making it important to analyze this control when applied...... to wind power plants. This paper proposes two different VAr reserve control strategies for a wind power plant. The amount of dynamic VAr available most of the operation time, makes the wind power plant (WPP) a good candidate to include a VAr reserve management system. Two different ways of implementing...... a VAr management system are proposed and analyzed. Such a reactive power reserve may be provided by the wind power plant since the amount of reactive power installed for most active power working points exceeds the demand required by the grid operator. Basically, this overrated reactive power capacity...

  15. Recovery plan for Chorizanthe robusta var. robusta (Robust Spineflower)

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Current Status: Chorizanthe robusta var. robusta (robust spineflower), which is federally endangered, is restricted to sandy soils along the coast and near-coastal...

  16. Mitochondrial DNA polymorphism of the yeast Saccharomyces bayanus var. uvarum.

    Science.gov (United States)

    Naumova, E S; Naumov, G I; Barrio, E; Querol, A

    2010-01-01

    Genetic relationships among forty-one strains of Saccharomyces bayanus var. uvarum isolated in different wine regions of Europe and four wild isolates were investigated by restriction analysis (RFLP) of mitochondrial DNA (mtDNA) with four restriction endonucleases, AluI, DdeI, HinfI and RsaI. No clear correlation between origin and source of isolation of S. bayanus var. uvarum strains and their mtDNA restriction profiles was found. On the whole, the mtDNA of S. bayanus var. uvarum is much less polymorphic than that of S. cerevisiae. This observation is in good agreement with results obtained by electrophoretic karyotyping. Unlike wine S cerevisiae, strains of S. bayanus var. uvarum display a low level of chromosome length polymorphism.

  17. Phytochemical and termiticidal study of Lantana camara var. aculeata leaves.

    Science.gov (United States)

    Verma, Rajesh K; Verma, Suman K

    2006-09-01

    Extracts of Lantana camara var. aculeata leaves were studied for their phytochemical constituents and termiticidal effects against adult termite workers. The 5% chloroform extract was found to be significantly effective against termite workers.

  18. Allelopathic activities of Jasminum officinale f. var. grandiflorum ...

    African Journals Online (AJOL)

    Allelopathic activities of Jasminum officinale f. var. grandiflorum (Linn.) Kob.: Inhibition effects on germination, seed imbibition, and α-amylase activity induction of Echinochloa crus-galli (L.) Beauv.

  19. An orientin derivative isolated from Passiflora tripartita var. mollissima

    OpenAIRE

    Ramos,Freddy A.; Castellanos, Leonardo; López, César; Palacios, Lizeth; Duque, Carmenza; Pacheco, Ricardo; Guzmán, Antonio

    2010-01-01

    Passiflora tripartita var. mollisima (banana passion fruit) is an edible fruit widespread in the Andean highlands of Colombia and Ecuador. The fruit is used for juices as well as for the sedative properties of the leaves. As a contribution to the chemical characterization of this species, a new compound, 4'- methoxyluteolin-8-C-6”acetylglucopyranoside, was isolated from the ethanolic extract of Passiflora tripartita var. mollisima leaves and identified by spectroscopical data (NMR, MS, UV).

  20. Orientation of the Fiscal Policy in Tunisia: Structural VAR Analysis

    Directory of Open Access Journals (Sweden)

    Wissem Khanfir

    2017-06-01

    Full Text Available The objective of this paper is to indicate the orientation of fiscal policy in Tunisia, using the structural budget balance, during the period 1972-2014. For this purpose, we estimate a structural VAR model consisting of the fiscal deficit to current GDP ratio and the volume of economic activity represented by the real GDP. We estimate bivariate structural VAR in order to decompose fiscal deficit fluctuations into different disturbances.

  1. Da abort ikke var en sag for kvinden

    DEFF Research Database (Denmark)

    Schultz, Annette Østergaard

    2013-01-01

    Case fra tiden før 1973, hvor der ikke var fri abort i Danmark. Sagen er fundet i Mødrehjælpens arkiv og giver som andre sager indblik i kvindens situation. Led i serien: Nyt i arkivet.......Case fra tiden før 1973, hvor der ikke var fri abort i Danmark. Sagen er fundet i Mødrehjælpens arkiv og giver som andre sager indblik i kvindens situation. Led i serien: Nyt i arkivet....

  2. VAR Methodology Used for Exchange Risk Measurement and Prevention

    Directory of Open Access Journals (Sweden)

    Florentina Balu

    2006-05-01

    Full Text Available In this article we discuss one of the modern risk measuring techniques Value-at-Risk (VaR. Currently central banks in major money centers, under the auspices of the BIS Basle Committee, adopt the VaR system to evaluate the market risk of their supervised banks. Banks regulators ask all commercial banks to report VaRs with their internal models. Value at risk (VaR is a powerful tool for assessing market risk, but it also imposes a challenge. Its power is its generality. Unlike market risk metrics such as the Greeks, duration and convexity, or beta, which are applicable to only certain asset categories or certain sources of market risk, VaR is general. It is based on the probability distribution for a portfolio’s market value. Value at Risk (VAR calculates the maximum loss expected (or worst case scenario on an investment, over a given time period and given a specified degree of confidence. There are three methods by which VaR can be calculated: the historical simulation, the variance-covariance method and the Monte Carlo simulation. The variance-covariance method is easiest because you need to estimate only two factors: average return and standard deviation. However, it assumes returns are well-behaved according to the symmetrical normal curve and that historical patterns will repeat into the future. The historical simulation improves on the accuracy of the VAR calculation, but requires more computational data; it also assumes that “past is prologue”. The Monte Carlo simulation is complex, but has the advantage of allowing users to tailor ideas about future patterns that depart from historical patterns.

  3. Comparisons of Soil Properties, Enzyme Activities and Microbial Communities in Heavy Metal Contaminated Bulk and Rhizosphere Soils of Robinia pseudoacacia L. in the Northern Foot of Qinling Mountain

    Directory of Open Access Journals (Sweden)

    Yurong Yang

    2017-11-01

    Full Text Available The toxic effects of heavy metal (HM contamination on plant metabolism and soil microorganisms have been emphasized recently; however, little is known about the differences in soil physical, chemical, and biological properties between bulk and rhizosphere soils contaminated with HMs in forest ecosystem. The present study was conducted to evaluate the rhizosphere effect on soil properties, enzyme activities and bacterial communities associated with Robinia pseudoacacia L. along a HM contamination gradient. Soil organic matter (SOM, available nitrogen (AN and phosphorus (AP contents were significantly higher in rhizosphere soil than those in bulk soil at HM contaminated sites (p < 0.05. Compared to bulk soil, activities of four soil enzymes indicative of C cycle (β-glucosidase, N cycle (protease, urease and P cycle (alkaline phosphatase in rhizosphere soil across all study sites increased by 47.5%, 64.1%, 52.9% and 103.8%, respectively. Quantitative PCR (qPCR and restriction fragment length polymorphism (RFLP were used to determine the relative abundance, composition and diversity of bacteria in both bulk and rhizosphere soils, respectively. The copy number of bacterial 16S rRNA gene in bulk soil was significantly lower than that in rhizosphere soil (p < 0.05, and it had significantly negative correlations with total/DTPA-extractable Pb concentrations (p < 0.01. Alphaproteobacteria, Gammaproteobacteria and Firmicutes were the most dominant groups of bacteria at different study sites. The bacterial diversity index of Species richness (S and Margalef (dMa were significantly higher in rhizosphere soil compared with those in bulk soil, although no difference could be found in Simpson index (D between bulk and rhizosphere soils (p > 0.05. Redundancy analysis (RDA results showed that soil pH, EC, SOM and total/DTPA-extractable Pb concentrations were the most important variables affecting relative abundance, composition and diversity of bacteria (p < 0

  4. EFFECTS OF MONETARY POLICY IN ROMANIA - A VAR APPROACH

    Directory of Open Access Journals (Sweden)

    Iulian Popescu

    2012-10-01

    Full Text Available Understanding how monetary policy decisions affect inflation and other economic variables is particularly important. In this paper we consider the implications of monetary policy under the inflation targeting regime in Romania, based on an autoregressive vector method including recursive VAR and structural VAR (SVAR. Therefore, we focus on assessing the extent and persistence of monetary policy effects on gross domestic product (GDP, price level, extended monetary aggregate (M3 and exchange rate. The main results of VAR analysis reflect a negative response of consumer price index (CPI, GDP and M3 and positive nominal exchange rate behaviour to a monetary policy shock, and also a limited impact of a short-term interest rate shock in explaining the consumer prices, production and exchange rate fluctuations.

  5. Extremum Seeking Control of Smart Inverters for VAR Compensation

    Energy Technology Data Exchange (ETDEWEB)

    Arnold, Daniel; Negrete-Pincetic, Matias; Stewart, Emma; Auslander, David, M; Callaway, Duncan

    2015-09-04

    Reactive power compensation is used by utilities to ensure customer voltages are within pre-defined tolerances and reduce system resistive losses. While much attention has been paid to model-based control algorithms for reactive power support and Volt Var Optimization (VVO), these strategies typically require relatively large communications capabilities and accurate models. In this work, a non-model-based control strategy for smart inverters is considered for VAR compensation. An Extremum Seeking control algorithm is applied to modulate the reactive power output of inverters based on real power information from the feeder substation, without an explicit feeder model. Simulation results using utility demand information confirm the ability of the control algorithm to inject VARs to minimize feeder head real power consumption. In addition, we show that the algorithm is capable of improving feeder voltage profiles and reducing reactive power supplied by the distribution substation.

  6. THE BRINE SHRIMP (ARTEMIA SALINA) LETHALITY OF Brassica oleracea var. capitata

    OpenAIRE

    O.T. TÜZÜN, E. GÜRKAN, F. HIRLAK,

    2015-01-01

    This work covers up the bio-activities of the five fractions obtained from the ethanolic extract of Brassica oleracea var. capitata (Cruciferae).Key Words: Brassica oleracea var. capitata, Brine shrimp (Artemia salina)

  7. Numerical and structural chromosome aberrations in cauliflower (Brassica oleracea var. botrytis) and Arabidopsis thaliana

    NARCIS (Netherlands)

    Ji, X.

    2014-01-01

    Numerical and structural chromosome aberrations in cauliflower (Brassica oleracea var. botrytis) and Arabidopsis thaliana. I studied numerical and structural chromosome aberrations in cauliflower (Brassica oleracea var. botrytis) and Arabidopsis thaliana. The large genomic changes are important for

  8. Acacia polyphylla var. rhytidocarpa (Leguminosae: Mimosoideae, un nuevo taxon de Bolivia y Brasil

    Directory of Open Access Journals (Sweden)

    Rico Arce, María de Lourdes

    2006-06-01

    Full Text Available Acacia polyphylla var. rhytidocarpa, a new taxon for Bolivia and Brazil is described and illustrated.Se describe e ilustra Acacia polyphylla var. rhytidocarpa, taxon nuevo para Bolivia y Brasil.

  9. Terpenoids and sterols from Nepeta cataria L. var. citriodora (Lamiaceae).

    Science.gov (United States)

    Klimek, Barbara; Modnicki, Daniel

    2005-01-01

    Isolation and GC/MS quantitative determination of ursolic acid in the herb of Nepeta cataria var. citriodora have been performed. The content of this compound was in the range 0.95-1.30%. Daucosterol (beta-sitosterol 3-O-beta-D-glucoside) was also isolated from the plant, in addition to small amounts of beta-sitosterol, campesterol, alpha-amyrin and beta-amyrin. The content and composition of essential oil in samples of the Nepeta cataria var. citriodora herb have been analysed as well.

  10. Penyerbukan Pada Rambutan (Nepheuum Lappaceum L. Var. Lappaceum)

    OpenAIRE

    UJI, TAHAN

    1987-01-01

    TAHAN UJI.1987.Pollination in Nephelium lappaceum L. var.lappaceum. Suppl.Berita Biologi. 3 : 31 - 34.Inflorescence morphology,flowering biology and insect visitors of rambutan (Nephelium lappaceum L. var.lappaceum) were observed in Semboja, East Kalimantan.Rambutan is dioeceous plant and cross pollinated by insect.It was showed that in isolated inflorescence failed to produce fruits.Six species of bees i.e. Apisindica,Trigone itama,T. nitidiventris. T. canifronsT.irridipenis and T.atripes ar...

  11. Saccharomyces cerevisiae var. boulardii fungemia following probiotic treatment

    Directory of Open Access Journals (Sweden)

    Marcelo C. Appel-da-Silva

    2017-12-01

    Full Text Available Probiotics are commonly prescribed as an adjuvant in the treatment of antibiotic-associated diarrhea caused by Clostridium difficile. We report the case of an immunocompromised 73-year-old patient on chemotherapy who developed Saccharomyces cerevisiae var. boulardii fungemia in a central venous catheter during treatment of antibiotic-associated pseudomembranous colitis with the probiotic Saccharomyces cerevisiae var. boulardii. Fungemia was resolved after interruption of probiotic administration without the need to replace the central venous line. Keywords: Saccharomyces, Probiotics, Fungemia, Critical illness, Clostridium difficile

  12. The influence of nitrate nitrogen on the peroxidase activity in tissues of Betula pendula Roth var. pendula and B. pendula var. carelica (Mercklin

    Directory of Open Access Journals (Sweden)

    K. M. Nikerova

    2017-02-01

    Full Text Available We studied the peroxidase activity during the period of active cambial growth in two forms of 8-year-old Silver birch trees with different degrees of manifestation of wood grain figure: Betula pendula var. pendula and Betula pendula var. carelica. We selected leaves from short shoots and leaves from long shoots, small roots, xylem and phloem for the analysis. It was determined that peroxidase activity in B. pendula var. carelica was higher than in B. pendula var. pendula. The more the degree of manifestation of wood grain figure was in Betula pendula var. carelica, the more the peroxidase activity in xylem was. It was suggested that local violation of cambial activity in Betula pendula var. carelica leads to increased quantity of reative oxygen species and it can enhance the peroxidase activity. To identify the response of birch plants under the excess of nitrogen fertilizers, we studied the influence of nitrate on the peroxidase activity. This investigation was made for the first time. Application of nitrate had led to the increase in the peroxidase activity in xylem and phloem only in Betula pendula var. carelica. In Betula pendula var. pendula the peroxidase activity in xylem and phloem has not changed under the application of nitrogen fertilizers. Application of KNO3 gave multidirectional changes in leaves in both forms. Peroxidase activity in B. pendula var. pendula increased, but activity of the enzyme in B. pendula var. carelica decreased.

  13. The Vibrio cholerae var regulon encodes a metallo-β-lactamase and an antibiotic efflux pump, which are regulated by VarR, a LysR-type transcription factor.

    Directory of Open Access Journals (Sweden)

    Hong-Ting Victor Lin

    Full Text Available The genome sequence of V. cholerae O1 Biovar Eltor strain N16961 has revealed a putative antibiotic resistance (var regulon that is predicted to encode a transcriptional activator (VarR, which is divergently transcribed relative to the putative resistance genes for both a metallo-β-lactamase (VarG and an antibiotic efflux-pump (VarABCDEF. We sought to test whether these genes could confer antibiotic resistance and are organised as a regulon under the control of VarR. VarG was overexpressed and purified and shown to have β-lactamase activity against penicillins, cephalosporins and carbapenems, having the highest activity against meropenem. The expression of VarABCDEF in the Escherichia coli (ΔacrAB strain KAM3 conferred resistance to a range of drugs, but most significant resistance was to the macrolide spiramycin. A gel-shift analysis was used to determine if VarR bound to the promoter regions of the resistance genes. Consistent with the regulation of these resistance genes, VarR binds to three distinct intergenic regions, varRG, varGA and varBC located upstream and adjacent to varG, varA and varC, respectively. VarR can act as a repressor at the varRG promoter region; whilst this repression was relieved upon addition of β-lactams, these did not dissociate the VarR/varRG-DNA complex, indicating that the de-repression of varR by β-lactams is indirect. Considering that the genomic arrangement of VarR-VarG is strikingly similar to that of AmpR-AmpC system, it is possible that V. cholerae has evolved a system for resistance to the newer β-lactams that would prove more beneficial to the bacterium in light of current selective pressures.

  14. Impacts of Bacillus thuringiensis var. israelensis and Bacillus ...

    African Journals Online (AJOL)

    The study assessed the impact of bio-larvicides- Bacillus thuringiensis var. israelensis (Bti) and B. sphaericus (Bs) on anopheline mosquito larval densities in four selected areas of Lusaka urban district. Larval densities were determined using a standard WHO protocol at each study area prior to and after larviciding.

  15. IMPACT DE METARHIZIUM ANISOPLIAE VAR ACRIDUM, SUR LES ...

    African Journals Online (AJOL)

    Deux investigations ont porté sur l'impact direct du champignon Metarhizium anisopliae var acridum (IMI-91609 :souche de Zonocerus variegatus) sur la mortalité et sur son impact indirect sur la progéniture de deux hyménoptères : Anagyrus lopezi (De Santis) (Hymenoptera : Encyrtidea) utilisé dans la lutte biologique ...

  16. stressed tobacco (Nicotiana rustica L. var. Souffi) seedlings

    African Journals Online (AJOL)

    edoja

    2013-03-20

    Mar 20, 2013 ... While salinity effects have been largely documented in crop plants, little data are available on Nicotiana rustica species (snuff tobacco), mainly nitrogen metabolism changes. Here, tobacco (N. rustica L. var. Souffi) seedlings were grown for one month on control medium, and then exposed for seven days to.

  17. (Var. Robusta) accessions from the founder gene pool evaluated ...

    African Journals Online (AJOL)

    STORAGESEVER

    2009-02-04

    Feb 4, 2009 ... RAPD profiles of genomic DNA from different coffea canephora (Var. robusta accessions amplified using primer. UBC 186 in a 2% agarose ...... Genome 39: 1102-1108. Fang DQ, Roose ML (1997). Identification of closely related citrus cultivars with inter-simple sequence repeat markers. Theor. Appl. Genet.

  18. The response of Trifolium africanum (Ser.) var. glabellum and ...

    African Journals Online (AJOL)

    The results of a glasshouse trial show that Trifolium africanum var. glabellum has considerable potential for use in radical veld improvement. Trifolium africanum outyielded T. repens cv. Ladino in acid, P fixing soils (Farningham series). Both species produced significantly higher yields on Longlands than on Farningham soil ...

  19. Chemical composition of essential oil from Psidium cattleianum var.

    African Journals Online (AJOL)

    rajuc

    2012-04-24

    Apr 24, 2012 ... ~40 m on latitude (29 48′S) and longitude (30 56′E). Extraction of the essential oil. The essential oil from dried leaves of P. cattleianum var. lucidum was extracted using a modification of an established procedure. (Denny, 1989). Briefly, 100 g of milled leaves were hydrodistilled in a Clevenger apparatus.

  20. Larvicidal Activity of Isodon japonicus var. glaucocalyx (Maxim ...

    African Journals Online (AJOL)

    Methods: The essential oil of I. japonicus var. glaucocalyx aerial parts was obtained by hydrodistillation and analyzed by gas chromatography (GC) and gas chromaotography-mas spectrometry (GC-MS). The activity of the essential oil was evaluated, using World Health Organization (WHO) procedures, against the fourth ...

  1. Pitfalls in VAR based return decompositions: A clarification

    DEFF Research Database (Denmark)

    Engsted, Tom; Pedersen, Thomas Quistgaard; Tanggaard, Carsten

    Based on Chen and Zhao's (2009) criticism of VAR based return de- compositions, we explain in detail the various limitations and pitfalls involved in such decompositions. First, we show that Chen and Zhao's interpretation of their excess bond return decomposition is wrong: the residual component...

  2. Epidemiological aspects of Trichophyton rubrum var. raubitschekii in Japan.

    Science.gov (United States)

    Hiruma, Midori; Kano, Rui; Sugita, Takashi; Mochizuki, Takashi; Hasegawa, Atsuhiko; Hiruma, Masataro

    2012-12-01

    Trichophyton rubrum var. raubitschekii is a rare anthropophilic dermatophyte isolated around the world from tinea corporis, tinea cruris, tinea pedis and tinea unguium. In this study, the isolation rate of T. rubrum var. raubitschekii was studied in 200 cases of tinea pedis and tinea unguium in Japan. The 200 clinical isolates were shown to be of downy type as their colonies on Sabouraud's dextrose agar were white to cream, suede-like to downy, with a yellow-brown to wine-red reverse, and they produced few macroconidia. The type strain of T. rubrum var. raubitschekii (CBS 100084) and one clinical isolate (KMU 8337; isolated at Kanazawa) of downy type tested positive for urease, but the reference strain of T. rubrum (CBS 392.58) and the remaining 199 clinical isolates tested negative. Further epidemiological investigations are required to study human cases of infection with the granular type of T. rubrum and T. rubrum var. raubitschekii in Japan. © 2012 Japanese Dermatological Association.

  3. Tissue culture in Pinus caribaea Mor. var. Hondurensis barr. and ...

    African Journals Online (AJOL)

    Tissue culture in Pinus caribaea Mor. var. Hondurensis barr. ... However, different degrees of greening were observed in some of the cultures (both compact and friable type). Thus ... Anatomical studies indicated that the differences between the compact and friable calluses were in the distribution of the meristematic cells.

  4. Growth and provenance variation of Pinus caribaea var ...

    African Journals Online (AJOL)

    A total of 21 provenances and sources of Pinus caribaea var. hondurensis were tested in 48 provenance / progeny trials in Brazil, South Africa, and Venezuela. Growth rates in Brazil and Venezuela were quite promising, and were less encouraging in Colombia. In Brazil and Venezuela, heights were around 12 m and mean ...

  5. Chemical composition of essential oil from Psidium cattleianum var.

    African Journals Online (AJOL)

    rajuc

    2012-04-24

    Apr 24, 2012 ... The aim of this study was to investigate the essential oil composition of Psidium cattleianum var. lucidum from South Africa. The essential oils were extracted by hydrodistillation and the components were identified by gas chromatography coupled to mass spectrometry (GC-MS) to determine the chemical ...

  6. Experimental poisoning by Baccharis megapotamica var. weirii in buffalo

    DEFF Research Database (Denmark)

    Oliveira-Filho, José C.; Carmo, Priscila M.S.; Iversen, Anita

    2012-01-01

    Five male 6-8 month-old Murrah buffalo calves were orally dosed with the fresh aerial parts of Baccharis megapotamica var. weirii at doses of 1, 3, 4, 5 and 10g/kg body weight (bw) (similar to 1-10mg macrocyclic trichothecenes/kg/bw). The B. megapotamica used for the experiment was harvested on a...

  7. Molt disruption and mortality of Locusta migratoria var. manilensis ...

    African Journals Online (AJOL)

    ... and RH-5849 at dose rates between 37.5-75 ppm. Initial studies of the insecticidal effects of these insect growth regulators on L. migratoria manilensis show them to be very potent locust control agents. Key words: Insect growth regulators, Locusta migratoria var. manilensis (Meyen), biological control, sustainability.

  8. Polymorphic microsatellite markers in Taxus chinensis var. mairei ...

    Indian Academy of Sciences (India)

    Taxus chinensis var. mairei is an endemic evergreen conifer in China. It is the most widely distributed species in the genus. Taxus and primarily occurs south of the Yangtze river (Zhou et al. 2009). It is noteworthy that this species is considered an important source for the production of taxol, which is used in the treatment of ...

  9. Anogeissus sericea var. nummalaria King ex Duthie (Combretaceae ...

    Indian Academy of Sciences (India)

    Anogeissus sericea var. nummalaria King ex Duthie (Combretaceae) is moderate sized multipurpose hard wood tree of dry deciduous forests with drooping branches and yellow to brownish-yellow flowers. it is endemic to Rajasthan and is considered to be a threatened tree of the region due to over exploitation for timber ...

  10. Fast Responding Voltage Regulator and Dynamic VAR Compensator

    Energy Technology Data Exchange (ETDEWEB)

    Divan, Deepak [Varentec, Incorporated, San Jose, CA (United States); Moghe, Rohit [Varentec, Incorporated, San Jose, CA (United States); Tholomier, Damien [Varentec, Incorporated, San Jose, CA (United States)

    2014-12-31

    The objectives of this project were to develop a dynamic VAR compensator (DVC) for voltage regulation through VAR support to demonstrate the ability to achieve greater levels of voltage control on electricity distribution networks, and faster response compared to existing grid technology. The goal of the project was to develop a prototype Fast Dynamic VAR Compensator (Fast DVC) hardware device, and this was achieved. In addition to developing the dynamic VAR compensator device, Varentec in partnership with researchers at North Carolina State University (NCSU) successfully met the objectives to model the potential positive impact of such DVCs on representative power networks. This modeling activity validated the ability of distributed dynamic VAR compensators to provide fast voltage regulation and reactive power control required to respond to grid disturbances under high penetration of fluctuating and intermittent distributed energy resources (DERs) through extensive simulation studies. Specifically the following tasks were set to be accomplished: 1) Development of dynamic VAR compensator to support dynamic voltage variations on the grid through VAR control 2) Extensive testing of the DVC in the lab environment 3) Present the operational DVC device to the DOE at Varentec’s lab 4) Formulation of a detailed specification sheet, unit assembly document, test setup document, unit bring-up plan, and test plan 5) Extensive simulations of the DVC in a system with high PV penetration. Understanding the operation with many DVC on a single distribution system 6) Creation and submittal of quarterly and final reports conveying the design documents, unit performance data, modeling simulation charts and diagrams, and summary explanations of the satisfaction of program goals. This report details the various efforts that led to the development of the Fast DVC as well as the modeling & simulation results. The report begins with the introduction in Section II which outlines the

  11. Amanitin and phallotoxin concentration in Amanita phalloides var. alba mushroom.

    Science.gov (United States)

    Kaya, Ertugrul; Yilmaz, Ismail; Sinirlioglu, Zeynep Aydin; Karahan, Selim; Bayram, Recep; Yaykasli, Kursat Oguz; Colakoglu, Serdar; Saritas, Ayhan; Severoglu, Zeki

    2013-12-15

    Although rarely seen, Amanita phalloides var. alba, a variety of A. phalloides type mushrooms, causes mushroom poisoning resulting in death. Since it is frequently confused with some edible mushrooms due to its white colored cap and macroscopic appearance, it becomes important in toxicological terms. Knowledge of the toxin amount contained in this mushroom type is invaluable in the treatment of cases involving poisoning. In this study, we examined the toxin levels of various parts of the A. phalloides var. alba mushroom growing Duzce region of Turkey. Toxin analyses were carried out for A. phalloides var. alba, which were collected from the forests Duzce region of Turkey in 2011, as a whole and also separately in its spore, pileus, gills, stipe and volva parts. The alpha amanitin, beta amanitin, gamma amanitin, phalloidin and phallacidine analyses of the mushrooms were carried out using the RP-HPLC method. A genetic analysis of the mushroom showed that it had similar genetic characteristics as A. phalloides and was a variety of it. The lowest toxins quantity was detected in spores, volva and stipe among all parts of the mushroom. The maximum amount of amatoxins was measured in the gills. The pileus also contained a high amount of amatoxins. Generally, amatoxins and phallotoxin concentrations were lower as compared to A. phalloides, but interestingly all toxins other than gamma toxin were higher in the spores of A. phalloides var. alba. The amount of toxin in all of its parts had sufficient concentrations to cause death. With this study, the amatoxin and phallotoxin concentrations in A. phalloides var. alba mushroom and in its parts have been revealed in detail for the first time. Copyright © 2013 Elsevier Ltd. All rights reserved.

  12. Metabolomic variation of brassica rapa var. rapa (var. raapstelen) and raphanus sativus l. at different developmental stages

    NARCIS (Netherlands)

    Jahangir, M.; Abdel-Farid, I.B.; Vos, de C.H.R.; Jonker, H.H.; Choi, Y.H.; Verpoorte, R.

    2014-01-01

    Brassica rapa (var. raapstelen) and Raphanus sativus (red radish) are being used as food and fodder while also known as model in recent plant research due to the diversity of metabolites as well as genetic resemblance to Arabidopsis. This study explains the change in metabolites (amino acids,

  13. De zoetwatergetijde-dotter van de Biesbosch en de Oude Maas: Caltha palustris L. var. araneosa, var. nov

    NARCIS (Netherlands)

    Steenis, van C.G.G.J.

    1971-01-01

    In tidal freshwater swamps c.q. river banks in the Biesbosch and Oude Maas (tidal level difference ca. 2 m), 51°45’ N, 4°30’-4°35’ E, a special ecological race of Caltha palustris L. occurs, here newly described as var. araneosa. Its tall, erect, multiflorous stem is characterized by elbow-like

  14. EFEITO FUNGITÓXICO DO ÓLEO DE NIM SOBRE Metarhizium anisopliae var. acridum e Metarhizium anisopliae var. anisopliae

    Directory of Open Access Journals (Sweden)

    Álison Bruno da Silva Santos

    2009-01-01

    Full Text Available Plague control is based almost exclusively on application of chemical substances, however these products are toxic to men and animals and cause odd effects on environment quality. In Plague Integrated Management (PIM, the use of selected insecticides and entomopathogenic fungi should be considered as one viable strategy for plague control in agriculture. This work aimed to evaluate, in laboratory, the compatibility of the entomopathogenic fungi Metarhizium anisopliae var. acridum and Metarhizium anisopliae var. anisopliae with the oil of Nim. The addition of the product was made to the potato-dextrose-agar medium still liquid (±45°C, in a way that the final concentration obeyed 50% of the producer's recommendation. After fungi inoculation, the dishes were incubated in a cimatized room at 28°C, photophase of 12 hours and relative humidity of 75±5% for 12 day period. The number of conidia per colonie was counted with a Neubauer chamber. Statistic delineament was entirely in random, with two treatments (PDA with insecticide, and a control group (PDA without insecticide, and 9 repetitions for each treatment. The results showed that the insecticide inhibited conidial production in Metarhizium anisopliae var. anisopliae strains when compared to the control group. The diameter of Metarhizium anisopliae var. acridum colonies suffered significative reduction in its size, compared to control. The tested insecticide, in the concentration and formulation used, presented compatibility with the tested strains.

  15. VAR2CSA expression on the surface of placenta-derived Plasmodium falciparum-infected erythrocytes

    DEFF Research Database (Denmark)

    Magistrado, Pamela; Salanti, Ali; Tuikue Ndam, Nicaise G

    2008-01-01

    intervillous space and parasite antigens. Both placental and chondroitin sulphate A-selected parasites have high-level transcripts of a unique var gene named var2csa. However, VAR2CSA has not been consistently found by proteomic analysis of placental parasites. Contrary to this, we found VAR2CSA expressed...

  16. Foco de leishmaniasis en El Hobo, municipio de El Carmen de Bolívar, Bolívar, Colombia

    Directory of Open Access Journals (Sweden)

    Luis Alberto Cortés

    2006-10-01

    Full Text Available Introducción. Se describen las características epidemiológica e importancia de la especies de Lutzomyia presentes en un foco de leishmaniasis en la vereda El Hobo Carmen de Bolívar, departamento de Bolívar. Objetivos. Obtener un conocimiento preliminar de la transmisión de leishmaniasis en la vereda El Hobo Carmen de Bolívar. Materiales y métodos. Se analizaron datos epidemiológicos y se realizaron capturas de flebótomos con trampas CDC y cebo humano en la vereda El Hobo. Para establecer la sero prevalencia de leishmaniasis visceral canina se hizo un estudio en perros mediante la técnica de inmunofluorescencia indirecta. Resultados. Se capturaron nueve especies de Lutzomyia: L. trinidadensis, L. evansi, L .cayennensis, L. venezuelensis, L. gomezi,L. dubitans, L. ylephiletor, L. yuilli, y L. walkeri. Las especie de mayor importancia por sus implicaciones en la transmisión de leishmaniasis cutánea y visceral fueron L. gomezi, y L. evansi respectivamente. Se reporta por primera vez para Bolívar especimenes de L. venezuelensis, L. dubitans, L. ylephiletor, L. yuilli, y L. walkeri. Se determinó una prevalencia de leishmaniasis visceral del 36% en los caninos estudiados. Según los reportes epidemiológicos, en el 2002 en el municipio de Carmen de Bolívar la leishmaniasis cutánea mostró un aumento del 40% y la leishmaniasis visceral canina del 80% de los casos con respecto al 2001, debido al brote presentado en la vereda El Hobo Conclusiones. Los resultados determinan a la vereda El Hobo como una zona de riesgo potencial de transmisión de leishmaniasis cutánea y visceral.

  17. Differential expression of var gene groups is associated with morbidity caused by Plasmodium falciparum infection in Tanzanian children

    DEFF Research Database (Denmark)

    Rottmann, Matthias; Lavstsen, Thomas; Mugasa, Joseph Paschal

    2006-01-01

    The var gene family of Plasmodium falciparum encodes the variant surface antigen Plasmodium falciparum erythrocyte membrane protein 1 (PfEMP1). PfEMP1 is considered an important pathogenicity factor in P. falciparum infection because it mediates cytoadherence to host cell endothelial receptors. var...... for children with clinical malaria than for children with asymptomatic infections. The var group C and var1-like transcript abundances were similar between the three sample groups. A transcript abundance pattern similar to that for var group A was observed for var2csa and var3-like genes. These results suggest...

  18. An In Vivo and In Vitro Model of Plasmodium falciparum Rosetting and Autoagglutination Mediated by varO, a Group A var Gene Encoding a Frequent Serotype▿

    Science.gov (United States)

    Vigan-Womas, Inès; Guillotte, Micheline; Le Scanf, Cécile; Igonet, Sébastien; Petres, Stéphane; Juillerat, Alexandre; Badaut, Cyril; Nato, Farida; Schneider, Achim; Lavergne, Anne; Contamin, Hugues; Tall, Adama; Baril, Laurence; Bentley, Graham A.; Mercereau-Puijalon, Odile

    2008-01-01

    In the Saimiri sciureus monkey, erythrocytes infected with the varO antigenic variant of the Plasmodium falciparum Palo Alto 89F5 clone bind uninfected red blood cells (rosetting), form autoagglutinates, and have a high multiplication rate, three phenotypic characteristics that are associated with severe malaria in human patients. We report here that varO parasites express a var gene having the characteristics of group A var genes, and we show that the varO Duffy binding-like 1α1 (DBL1α1) domain is implicated in the rosetting of both S. sciureus and human erythrocytes. The soluble varO N-terminal sequence (NTS)-DBL1α1 recombinant domain, produced in a baculovirus-insect cell system, induced high titers of antibodies that reacted with varO-infected red blood cells and disrupted varO rosettes. varO parasites were culture adapted in vitro using human erythrocytes. They formed rosettes and autoagglutinates, and they had the same surface serotype and expressed the same varO gene as the monkey-propagated parasites. To develop an in vitro model with highly homogeneous varO parasites, rosette purification was combined with positive selection by panning with a varO NTS-DBL1α1-specific mouse monoclonal antibody. The single-variant, clonal parasites were used to analyze seroprevalence for varO at the village level in a setting where malaria is holoendemic (Dielmo, Senegal). We found 93.6% (95% confidence interval, 89.7 to 96.4%) seroprevalence for varO surface-reacting antibodies and 86.7% (95% confidence interval, 82.8 to 91.6%) seroprevalence for the recombinant NTS-DBL1α1 domain, and virtually all permanent residents had seroconverted by the age of 5 years. These data imply that the varO model is a relevant in vivo and in vitro model for rosetting and autoagglutination that can be used for rational development of vaccine candidates and therapeutic strategies aimed at preventing malaria pathology. PMID:18809668

  19. An in vivo and in vitro model of Plasmodium falciparum rosetting and autoagglutination mediated by varO, a group A var gene encoding a frequent serotype.

    Science.gov (United States)

    Vigan-Womas, Inès; Guillotte, Micheline; Le Scanf, Cécile; Igonet, Sébastien; Petres, Stéphane; Juillerat, Alexandre; Badaut, Cyril; Nato, Farida; Schneider, Achim; Lavergne, Anne; Contamin, Hugues; Tall, Adama; Baril, Laurence; Bentley, Graham A; Mercereau-Puijalon, Odile

    2008-12-01

    In the Saimiri sciureus monkey, erythrocytes infected with the varO antigenic variant of the Plasmodium falciparum Palo Alto 89F5 clone bind uninfected red blood cells (rosetting), form autoagglutinates, and have a high multiplication rate, three phenotypic characteristics that are associated with severe malaria in human patients. We report here that varO parasites express a var gene having the characteristics of group A var genes, and we show that the varO Duffy binding-like 1alpha(1) (DBL1alpha(1)) domain is implicated in the rosetting of both S. sciureus and human erythrocytes. The soluble varO N-terminal sequence (NTS)-DBL1alpha(1) recombinant domain, produced in a baculovirus-insect cell system, induced high titers of antibodies that reacted with varO-infected red blood cells and disrupted varO rosettes. varO parasites were culture adapted in vitro using human erythrocytes. They formed rosettes and autoagglutinates, and they had the same surface serotype and expressed the same varO gene as the monkey-propagated parasites. To develop an in vitro model with highly homogeneous varO parasites, rosette purification was combined with positive selection by panning with a varO NTS-DBL1alpha(1)-specific mouse monoclonal antibody. The single-variant, clonal parasites were used to analyze seroprevalence for varO at the village level in a setting where malaria is holoendemic (Dielmo, Senegal). We found 93.6% (95% confidence interval, 89.7 to 96.4%) seroprevalence for varO surface-reacting antibodies and 86.7% (95% confidence interval, 82.8 to 91.6%) seroprevalence for the recombinant NTS-DBL1alpha(1) domain, and virtually all permanent residents had seroconverted by the age of 5 years. These data imply that the varO model is a relevant in vivo and in vitro model for rosetting and autoagglutination that can be used for rational development of vaccine candidates and therapeutic strategies aimed at preventing malaria pathology.

  20. Effects of temperature, water activity and gas atmosphere on mycelial growth of tempe fungi Rhizopus microsporus var. microsporus and R. microsporus var. oligosporus

    NARCIS (Netherlands)

    Han, B.Z.; Nout, M.J.R.

    2001-01-01

    Rhizopus microsporus var. microsporus and var. oligosporus are used in the manufacture of various Asian fermented foods (tempe, black oncom, sufu). In view of solid-substrate fermentation (SSF) control, mycelial growth of strains of both varieties was tested for sensitivity to fluctuations of

  1. [Photosynthetic parameters and physiological indexes of Paris polyphylla var. yunnanensis influenced by arbuscular mycorrhizal fungi].

    Science.gov (United States)

    Wei, Zheng-xin; Guo, Dong-qin; Li, Hai-feng; Ding, Bo; Zhang, Jie; Zhou, Nong; Yu, Jie

    2015-10-01

    Through potted inoculation test at room temperature and indoor analysis, the photosynthetic parameters and physiological and biochemical indexes of Paris polyphylla var. yunnanensis were observed after 28 arbuscular mycorrhizal (AM) fungi were injected into the P. polyphylla var. yunnanensis growing in a sterile soil environment. The results showed that AM fungi established a good symbiosis with P. polyphylla var. yunnanensis. The AM fungi influenced the photosynthetic parameters and physiological and biochemical indexes of P. polyphylla var. yunnanensis. And the influences were varied depending on different AM fungi. The application of AM fungi improved photosynthesis intensity of P. polyphylla var. yunnanensis mesophyll cells, the contents of soluble protein and soluble sugar, protective enzyme activity of P. polyphylla var. yunnanensis leaf, which was beneficial to resist the adverse environment and promote the growth of P. polyphylla var. yunnanensis. Otherwise, there was a certain mutual selectivity between P. polyphylla var. yunnanensis and AM fungi. From the comprehensive effect of inoculation, Racocetra coralloidea, Scutellospora calospora, Claroideoglomus claroideum, S. pellucida and Rhizophagus clarus were the most suitable AM fungi to P. polyphylla var. yunnanensis when P. polyphylla var. yunnanensis was planted in the field.

  2. Static Var Compensator Project for the SPS Electrical Network

    CERN Document Server

    Kahle, K

    2000-01-01

    This paper gives a progress report on the Static Var Compensator project BEF2 for the SPS electrical network. Following a market survey and a call for tenders, a contract has been awarded to ABB Sweden and the project is now in the phase of detailed performance studies, system design and ordering of the main electrical components. This progress report describes the electrical design, summarises the results of the harmonic filter design studies, discusses the interfacing of the control- and communication system and explains the mechanical layout of the Static Var Compensator and as well as the project co-ordination with the feeding BE substation renovation project. Finally, the project planning is presented and critical paths are evaluated.

  3. BRINE SHRIMP LETHALITY BIOASSAY OF GLAUCIUM GRANDIFLORUM VAR. GRANDIFLORUM

    OpenAIRE

    A. SARI, Ç. ÜNSAL, İ. SARIOĞLU, A. SARI, Ç. ÜNSAL, İ. SARIOĞLU

    2013-01-01

    Türkiye'nin 3 farklı bölgesinden toplanan Glaucium grandiflorum Boiss. et Huet var. grandiflorum örneklerinin toprak üstü kısımlarından elde edilen alkaloit ekstreleri ve bu ekstrelerden elde edilen majör alkaloitler allokriptopin, protopİn, (+)-izokoridin, (+)-korİdin üzerinde brİne shrimp lethality testi yapılarak sitotoksisiteleri İncelenmiştir. Glaucium grandiflorum var. grandiflorum türünün 3 örneği de önemli oranda sitotoksik aktİvite göstermiştir. Allokriptopin, protopin, (+)-izok...

  4. Network-Cognizant Design of Decentralized Volt/VAR Controllers

    Energy Technology Data Exchange (ETDEWEB)

    Baker, Kyri A [National Renewable Energy Laboratory (NREL), Golden, CO (United States); Bernstein, Andrey [National Renewable Energy Laboratory (NREL), Golden, CO (United States); Zhao, Changhong [National Renewable Energy Laboratory (NREL), Golden, CO (United States); Dall-Anese, Emiliano [National Renewable Energy Laboratory (NREL), Golden, CO (United States)

    2017-10-03

    This paper considers the problem of designing decentralized Volt/VAR controllers for distributed energy resources (DERs). The voltage-reactive power characteristics of individual DERs are obtained by solving a convex optimization problem, where given performance objectives (e.g., minimization of the voltage deviations from a given profile) are specified and stability constraints are enforced. The resultant Volt/VAR characteristics are network-cognizant, in the sense that they embed information on the location of the DERs and, consequently, on the effect of reactive-power adjustments on the voltages throughout the feeder. Bounds on the maximum voltage deviation incurred by the controllers are analytically established. Numerical results are reported to corroborate the technical findings.

  5. VaR: Exchange Rate Risk and Jump Risk

    Directory of Open Access Journals (Sweden)

    Fen-Ying Chen

    2010-01-01

    Full Text Available Incorporating the Poisson jumps and exchange rate risk, this paper provides an analytical VaR to manage market risk of international portfolios over the subprime mortgage crisis. There are some properties in the model. First, different from past studies in portfolios valued only in one currency, this model considers portfolios not only with jumps but also with exchange rate risk, that is vital for investors in highly integrated global financial markets. Second, in general, the analytical VaR solution is more accurate than historical simulations in terms of backtesting and Christoffersen's independence test (1998 for small portfolios and large portfolios. In other words, the proposed model is reliable not only for a portfolio on specific stocks but also for a large portfolio. Third, the model can be regarded as the extension of that of Kupiec (1999 and Chen and Liao (2009.

  6. REDESCUBRIMIENTO DE MYRRHINIUM ATROPURPUREUM VAR. OCTANDRUM (MYRTACEAE: MYRTINAE EN COLOMBIA

    Directory of Open Access Journals (Sweden)

    PARRA-O. CARLOS

    2003-12-01

    Full Text Available Se documenta el redescubrimiento de Myrrhinium atropurpureum var. octandrum(Myrteae DC., Myrtaceae, taxón prácticamente desconocido en Colombia. Se presentala descripción del taxón, así como notas sobre su distribución en Colombia, elhábitat en que se desarrolla y su posible estatus dentro de las categorías de la ListaRoja de la UICN.

  7. ANTIPROLIFERATIVE PROTEIN FROM TRICHOSANTHES CUCUMERINA L. VAR ANGUINA (L.) HAINES

    OpenAIRE

    CHURIYAH; WAHONO SUMARYONO

    2010-01-01

    Three proteins were isolated from plant parts of Trichosanthes cucumerina L. var anguina (L.) Haines, they were TF2 from fruit, TS3 from seed and TR3 from root with molecular masses (Mr) approximately 16 - 64 kDa on SDS-PAGE characterization. The proteins were extracted with Phosphate Buffer Saline (PBS), then they were precipitated using 80% saturated ammonium sulphate continued with the dialysis using cellophane. The dialysate was fractionated through gel filtration chromatography. T...

  8. Achieving Parsimony in Bayesian VARs with the Horseshoe Prior

    OpenAIRE

    Follett, Lendie; Yu, Cindy

    2017-01-01

    In the context of a vector autoregression (VAR) model, or any multivariate regression model, the number of relevant predictors may be small relative to the information set available from which to build a prediction equation. It is well known that forecasts based off of (un-penalized) least squares estimates can overfit the data and lead to poor predictions. Since the Minnesota prior was proposed (Doan et al. (1984)), there have been many methods developed aiming at improving prediction perfor...

  9. Probiotic Activity of Saccharomyces cerevisiae var. boulardii Against Human Pathogens

    Directory of Open Access Journals (Sweden)

    Katarzyna Rajkowska

    2012-01-01

    Full Text Available Infectious diarrhoea is associated with a modification of the intestinal microflora and colonization of pathogenic bacteria. Tests were performed for seven probiotic yeast strains of Saccharomyces cerevisiae var. boulardii, designated for the prevention and treatment of diarrhoea. To check their possible effectiveness against diarrhoea of different etiologies, the activity against a variety of human pathogenic or opportunistic bacteria was investigated in vitro. In mixed cultures with S. cerevisiae var. boulardii, a statistically significant reduction was observed in the number of cells of Listeria monocytogenes, Pseudomonas aeruginosa and Staphylococcus aureus, by even 55.9 % in the case of L. monocytogenes compared with bacterial monocultures. The influence of yeasts was mostly associated with the shortening of the bacterial lag phase duration, more rapid achievement of the maximum growth rates, and a decrease by 4.4–57.1 % (L. monocytogenes, P. aeruginosa, or an increase by 1.4–70.6 % (Escherichia coli, Enterococcus faecalis, Salmonella Typhimurium in the exponential growth rates. Another issue included in the research was the ability of S. cerevisiae var. boulardii to bind pathogenic bacteria to its cell surface. Yeasts have shown binding capacity of E. coli, S. Typhimurium and additionally of S. aureus, Campylobacter jejuni and E. faecalis. However, no adhesion of L. monocytogenes and P. aeruginosa to the yeast cell wall was noted. The probiotic activity of S. cerevisiae var. boulardii against human pathogens is related to a decrease in the number of viable and active cells of bacteria and the binding capacity of yeasts. These processes may limit bacterial invasiveness and prevent bacterial adherence and translocation in the human intestines.

  10. Porcine sarcoptic mange (Sarcoptes scabiel var suis ) in Ibadan ...

    African Journals Online (AJOL)

    A total of 102 (28.6%) of 357 pigs in Ibadan yielded evidence of infection with Sarcoptes scabiei var suis. Of 89 weaners, 15.7% showed positive infection as opposed to 31% of 113 piglets, 18.4% of 125 sows and 26.7% of 30 boars. The parasite was mush higher in samples from pre-weaning pigs than in samples from any ...

  11. Complete mitochondrial genome of Xingguo red carp (Cyprinus carpio var. singuonensis) and purse red carp (Cyprinus carpio var. wuyuanensis).

    Science.gov (United States)

    Hu, Guang-Fu; Liu, Xiang-Jiang; Li, Zhong; Liang, Hong-Wei; Hu, Shao-Na; Zou, Gui-Wei

    2016-01-01

    The complete mitochondrial genomes of Xingguo red carp (Cyprinus carpio var. singuonensis) and purse red carp (Cyprinus carpio var. wuyuanensis) were sequenced. Comparison of these two mitochondrial genomes revealed that the mtDNAs of these two common carp varieties were remarkably similar in genome length, gene order and content, and AT content. However, size variation between these two mitochondrial genomes presented here showed 39 site differences in overall length. About 2 site differences were located in rRNAs, 3 in tRNAs, 3 in the control region, 31 in protein-coding genes. Thirty-one variable bases in the protein-coding regions between the two varieties mitochondrial sequences led to three variable amino acids, which were mainly located in the protein ND5 and ND4.

  12. Analysis list: Su(var)3-7 [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Su(var)3-7 Adult,Embryo,Larvae + dm3 http://dbarchive.biosciencedbc.jp/kyushu-u/dm3.../target/Su(var)3-7.1.tsv http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/target/Su(var)3-7.5.tsv http://dbarchive.bioscience...dbc.jp/kyushu-u/dm3/target/Su(var)3-7.10.tsv http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/c...olo/Su(var)3-7.Adult.tsv,http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/colo/Su(v...ar)3-7.Embryo.tsv,http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/colo/Su(var)3-7.Larvae.tsv http://dbarchive.bioscience

  13. Using ClinVar as a Resource to Support Variant Interpretations

    Science.gov (United States)

    Harrison, Steven M.; Riggs, Erin R.; Maglott, Donna R.; Lee, Jennifer M.; Azzariti, Danielle R.; Niehaus, Annie; Ramos, Erin M.; Martin, Christa L.; Landrum, Melissa J.; Rehm, Heidi L.

    2016-01-01

    ClinVar is a freely accessible, public archive of reports of the relationships among genomic variants and phenotypes. To facilitate evaluation of the clinical significance of each variant, ClinVar aggregates submissions of the same variant, displays supporting data from each submission, and determines if the submitted clinical interpretations are conflicting or concordant. The unit describes how to (1) identify sequence and structural variants of interest in ClinVar with by multiple searching approaches, including Variation Viewer and (2) understand the display of submissions to ClinVar and the evidence supporting each interpretation. By following this protocol, ClinVar users will be able to learn how to incorporate the wealth of resources and knowledge in ClinVar into variant curation and interpretation. PMID:27037489

  14. Using ClinVar as a Resource to Support Variant Interpretation.

    Science.gov (United States)

    Harrison, Steven M; Riggs, Erin R; Maglott, Donna R; Lee, Jennifer M; Azzariti, Danielle R; Niehaus, Annie; Ramos, Erin M; Martin, Christa L; Landrum, Melissa J; Rehm, Heidi L

    2016-04-01

    ClinVar is a freely accessible, public archive of reports of the relationships among genomic variants and phenotypes. To facilitate evaluation of the clinical significance of each variant, ClinVar aggregates submissions of the same variant, displays supporting data from each submission, and determines if the submitted clinical interpretations are conflicting or concordant. The unit describes how to (1) identify sequence and structural variants of interest in ClinVar by multiple searching approaches, including Variation Viewer and (2) understand the display of submissions to ClinVar and the evidence supporting each interpretation. By following this protocol, ClinVar users will be able to learn how to incorporate the wealth of resources and knowledge in ClinVar into variant curation and interpretation. Copyright © 2016 John Wiley & Sons, Inc.

  15. Structural insight into epitopes in the pregnancy-associated malaria protein VAR2CSA.

    Directory of Open Access Journals (Sweden)

    Pernille Andersen

    2008-02-01

    Full Text Available Pregnancy-associated malaria is caused by Plasmodium falciparum malaria parasites binding specifically to chondroitin sulfate A in the placenta. This sequestration of parasites is a major cause of low birth weight in infants and anemia in the mothers. VAR2CSA, a polymorphic multi-domain protein of the PfEMP1 family, is the main parasite ligand for CSA binding, and identification of protective antibody epitopes is essential for VAR2CSA vaccine development. Attempts to determine the crystallographic structures of VAR2CSA or its domains have not been successful yet. In this study, we propose 3D models for each of the VAR2CSA DBL domains and we show that regions in the fold of VAR2CSA inter-domain 2 and a PfEMP1 CIDR domain seem to be homologous to the EBA-175 and Pk alpha-DBL fold. This suggests that ID2 could be a functional domain. We also identify regions of VAR2CSA present on the surface of native VAR2CSA by comparing reactivity of plasma containing anti-VAR2CSA antibodies in peptide array experiments before and after incubation with native VAR2CSA. By this method we identify conserved VAR2CSA regions targeted by antibodies that react with the native molecule expressed on infected erythrocytes. By mapping the data onto the DBL models we present evidence suggesting that the S1+S2 DBL sub-domains are generally surface-exposed in most domains, whereas the S3 sub-domains are less exposed in native VAR2CSA. These results comprise an important step towards understanding the structure of VAR2CSA on the surface of CSA-binding infected erythrocytes.

  16. Comparison between 3D-Var and 4D-Var data assimilation methods for the simulation of a heavy rainfall case in central Italy

    Science.gov (United States)

    Mazzarella, Vincenzo; Maiello, Ida; Capozzi, Vincenzo; Budillon, Giorgio; Ferretti, Rossella

    2017-08-01

    This work aims to provide a comparison between three dimensional and four dimensional variational data assimilation methods (3D-Var and 4D-Var) for a heavy rainfall case in central Italy. To evaluate the impact of the assimilation of reflectivity and radial velocity acquired from Monte Midia Doppler radar into the Weather Research Forecasting (WRF) model, the quantitative precipitation forecast (QPF) is used.The two methods are compared for a heavy rainfall event that occurred in central Italy on 14 September 2012 during the first Special Observation Period (SOP1) of the HyMeX (HYdrological cycle in Mediterranean EXperiment) campaign. This event, characterized by a deep low pressure system over the Tyrrhenian Sea, produced flash floods over the Marche and Abruzzo regions, where rainfall maxima reached more than 150 mm 24 h-1.To identify the best QPF, nine experiments are performed using 3D-Var and 4D-Var data assimilation techniques. All simulations are compared in terms of rainfall forecast and precipitation measured by the gauges through three statistical indicators: probability of detection (POD), critical success index (CSI) and false alarm ratio (FAR). The assimilation of conventional observations with 4D-Var method improves the QPF compared to 3D-Var. In addition, the use of radar measurements in 4D-Var simulations enhances the performances of statistical scores for higher rainfall thresholds.

  17. Comparison between 3D-Var and 4D-Var data assimilation methods for the simulation of a heavy rainfall case in central Italy

    Directory of Open Access Journals (Sweden)

    V. Mazzarella

    2017-08-01

    Full Text Available This work aims to provide a comparison between three dimensional and four dimensional variational data assimilation methods (3D-Var and 4D-Var for a heavy rainfall case in central Italy. To evaluate the impact of the assimilation of reflectivity and radial velocity acquired from Monte Midia Doppler radar into the Weather Research Forecasting (WRF model, the quantitative precipitation forecast (QPF is used.The two methods are compared for a heavy rainfall event that occurred in central Italy on 14 September 2012 during the first Special Observation Period (SOP1 of the HyMeX (HYdrological cycle in Mediterranean EXperiment campaign. This event, characterized by a deep low pressure system over the Tyrrhenian Sea, produced flash floods over the Marche and Abruzzo regions, where rainfall maxima reached more than 150 mm 24 h−1.To identify the best QPF, nine experiments are performed using 3D-Var and 4D-Var data assimilation techniques. All simulations are compared in terms of rainfall forecast and precipitation measured by the gauges through three statistical indicators: probability of detection (POD, critical success index (CSI and false alarm ratio (FAR. The assimilation of conventional observations with 4D-Var method improves the QPF compared to 3D-Var. In addition, the use of radar measurements in 4D-Var simulations enhances the performances of statistical scores for higher rainfall thresholds.

  18. A new phenolic glycoside from Spiraea prunifolia var. simpliciflora twigs.

    Science.gov (United States)

    Jang, Sung Wan; Suh, Won Se; Kim, Chung Sub; Kim, Ki Hyun; Lee, Kang Ro

    2015-11-01

    The phytochemical investigation of the methanol extract from the twigs of Spiraea prunifolia var. simpliciflora (Rosaceae) using column chromatography led to the isolation of a new phenol glycoside, 1-O-(E)-caffeoyl-2-O-p-(E)-coumaroyl-β-D-glucopyranose (1), together with 16 known phenolic compounds (2-17). The structure of this new compound was elucidated by analysis of spectroscopic data including 1D, 2D nuclear magnetic resonance and HR-FAB-MS data. The isolated compounds were tested for cytotoxicity against four human tumor cell lines in vitro using the sulforhodamine B bioassay.

  19. Biotransformation of patchoulol by Cunninghamella echinulata var. elegans.

    Science.gov (United States)

    Xu, Fangfang; Liao, Kangsheng; Liu, Yuhong; Zhang, Zhenbiao; Guo, Dean; Su, Ziren; Liu, Bo

    2016-03-01

    Biocatalysis of patchoulol (PA) was performed by the fungus Cunninghamella echinulata var. elegans. Eight metabolites (1-8) including four new compounds were obtained, and their structures were elucidated as (5R,8S)-5,8 dihydroxypatchoulol (1), (5R*,9R*)-5,9 dihydroxypatchoulol (2), (6S*, 9S*)-6,9 dihydroxypatchoulol (3), and (4R*)-4 hydroxypatchoulol (4) by spectroscopic analysis. The absolute configuration of 1 was determined by single crystal X-ray diffraction. Copyright © 2016 Elsevier B.V. All rights reserved.

  20. Five new schinortriterpenoids from Schisandra propinqua var. propinqua.

    Science.gov (United States)

    Ding, Wen-Ping; Hu, Kun; Liu, Miao; Li, Xing-Ren; Chen, Rong; Li, Xiao-Nian; Du, Xue; Puno, Pema-Tenzin; Sun, Han-Dong

    2018-02-14

    Five new schinortriterpenoids, propinqtrilactones A and B (1 and 2) with rare lancischiartane scaffold, and propindilactones V-X (3-5), were isolated from the stems and leaves of Schisandra propinqua var. propinqua. Their structures were elucidated on the basis of comprehensive spectroscopic and mass spectrometric analysis. The absolute configurations of 1-5 were determined by CD methods, X-ray diffraction analysis and theoretical calculations. 4 was tested for its cytotoxic activities against five human tumor cell lines. Copyright © 2017. Published by Elsevier B.V.

  1. A New Languidulane Diterpenoid from Salvia mexicana var. mexicana

    Directory of Open Access Journals (Sweden)

    Jorge Cárdenas

    2011-10-01

    Full Text Available From the aerial parts of Salvia mexicana var. mexicana, two C-10 epimers (α and β of salvimexicanolide were isolated. Our interpretation of the data, especially the 13C NMR, led us to conclude that the previously described 13C-NMR spectrum of the α-epimer was not accurately assigned and it actually corresponds to the β-epimer. The structures proposed for the salvimexicanolides were verified by means of NOESY experiments. Dugesin B, arbutin, naringenin and the mixture of oleanolic and ursolic acids were also isolated from this Salvia spp.

  2. Phenolic compounds from the roots of Valeriana officinalis var. latifolia

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Peng-Cheng; Ran, Xin-Hui; Luo, Huai-Rong; Liu, Yu-Qing; Zhou Jun [State Key Laboratory of Phytochemistry and Plant Resources in West China. Kunming Institute of Botany, Chinese Academy of Sciences (China); Ma, Qing-Yun; Zhao, You-Xing, E-mail: zhoujun3264@yahoo.com.cn, E-mail: zhaoyouxing@itbb.org.cn [Key Laboratory of Biology and Genetic Resources of Tropical Crops. Ministry of Agriculture, Institute of Tropical Bioscience and Biotechnology. Chinese Academy of Tropical Agriculture Sciences (China)

    2013-09-15

    A new benzofuran neolignan, dihydrodehydrodiconiferyl alcohol 9-isovalerate, along with ten known phenolic compounds, olivil, pinoresinol, 8-hydroxypinoresinol, pinorespiol, 8-hydroxy- 7-epipinoresinol, trans-p-hydroxyphenyl- propenoic acid, cis-p-hydroxyphenyl-propenoic acid, ferulic acid, isoferulic acid and isovanillin were isolated from the roots of Valeriana officinalis var. latifolia. Their structures and configurations were elucidated on the basis of spectroscopic methods. The inhibitory activity for acetylcholinesterase (AChE) and enhancing activity on nerve growth factor (NGF)-mediated neurite outgrowth in PC12 cells of dihydrodehydrodiconiferyl alcohol 9-isovaterate and olivil were evaluated. (author)

  3. Clinical development of a VAR2CSA-based placental malaria vaccine PAMVAC

    DEFF Research Database (Denmark)

    Gbédandé, Komi; Fievet, Nadine; Viwami, Firmine

    2017-01-01

    Background  The antigen VAR2CSA plays a pivotal role in the pathophysiology of pregnancy-associated malaria (PAM) caused by Plasmodium falciparum. A VAR2CSA-based vaccine candidate, PAMVAC, is under development by an EU-funded multi-country consortium (PlacMalVac project). As part of PAMVAC...

  4. Return predictability and intertemporal asset allocation: Evidence from a bias-adjusted VAR model

    DEFF Research Database (Denmark)

    Engsted, Tom; Pedersen, Thomas Quistgaard

    We extend the VAR based intertemporal asset allocation approach from Campbell et al. (2003) to the case where the VAR parameter estimates are adjusted for small- sample bias. We apply the analytical bias formula from Pope (1990) using both Campbell et al.'s dataset, and an extended dataset...

  5. Coumarins from Murraya paniculata var. zollingeri endemic to the Timor Islands.

    Science.gov (United States)

    Teshima, Naoko; Yamada, Hiromi; Ju-ichi, Motoharu; Uji, Tahan; Kinoshita, Takeshi; Ito, Chihiro

    2015-02-01

    Four new coumarins, murrangatin-1'-senecioate (1), 5-methoxypanial (2), mexoticin-2'-senecioate (3) and murralongic acid (4), were isolated from the leaves of Murraya paniculata var. zollingeri, together with 23 known coumarins. The structures of the new compounds were elucidated based on spectroscopic data. The taxonomic status of M. paniculata var. zollingeri is briefly discussed, along with its similarity to M. paniculata.

  6. Scleria neesii Kunth var. gadchiroliensis (Cyperaceae, a New Variety from Central India

    Directory of Open Access Journals (Sweden)

    Milind M. Sardesai

    2015-12-01

    Full Text Available A new variety of Scleria P. J. Bergius (Cyperaceae S. neesii Kunth var. gadchiroliensis from Central India is described here with description, line-drawing, photographic illustration and notes. It resembles with S. neesii Kunth var. neesii in overall morphology but differs in having milky white nuts covered with ribbon like hairs on distinct stalk.

  7. Generation of antigenic diversity in Plasmodium falciparum by structured rearrangement of Var genes during mitosis.

    Directory of Open Access Journals (Sweden)

    Antoine Claessens

    2014-12-01

    Full Text Available The most polymorphic gene family in P. falciparum is the ∼60 var genes distributed across parasite chromosomes, both in the subtelomeres and in internal regions. They encode hypervariable surface proteins known as P. falciparum erythrocyte membrane protein 1 (PfEMP1 that are critical for pathogenesis and immune evasion in Plasmodium falciparum. How var gene sequence diversity is generated is not currently completely understood. To address this, we constructed large clone trees and performed whole genome sequence analysis to study the generation of novel var gene sequences in asexually replicating parasites. While single nucleotide polymorphisms (SNPs were scattered across the genome, structural variants (deletions, duplications, translocations were focused in and around var genes, with considerable variation in frequency between strains. Analysis of more than 100 recombination events involving var exon 1 revealed that the average nucleotide sequence identity of two recombining exons was only 63% (range: 52.7-72.4% yet the crossovers were error-free and occurred in such a way that the resulting sequence was in frame and domain architecture was preserved. Var exon 1, which encodes the immunologically exposed part of the protein, recombined in up to 0.2% of infected erythrocytes in vitro per life cycle. The high rate of var exon 1 recombination indicates that millions of new antigenic structures could potentially be generated each day in a single infected individual. We propose a model whereby var gene sequence polymorphism is mainly generated during the asexual part of the life cycle.

  8. The root anchorage ability of Salix alba var. tristis using a pull-out test

    African Journals Online (AJOL)

    Because Salix alba var. tristis has a strong capability of keeping moisture, preventing drought and reducing wind, we selected it as a model species for soil bioengineering research and application in Beijing, China. In this study, we aimed to investigate the soil-reinforcing effects by Salix alba var. tristis. We performed a ...

  9. Mixed meningitis: association of Acinetobacter calcoaceticus var lwoffi and Streptococcus faecium.

    OpenAIRE

    Sarma, P. S.; Mohanty, S.

    1995-01-01

    We describe mixed bacterial meningitis in a young man due to Acinetobacter calcoaceticus var lwoffi and Streptococcus faecium. The combination of A calcoaceticus var lwoffi and S faecium as aetiology of mixed bacterial meningitis has not been previously reported. The patient recovered completely without neurologic sequelae on chloramphenicol and penicillin.

  10. Chemical composition and herbicidal potent of cauliflower (Brassica oleracea var. botrytis) and cabbage turnip (Brassica oleracea var. gongylodes). Saad, I., Rinez, I., Ghezal, N., and Haouala, R. (Tunisia)

    OpenAIRE

    Inès Saad; Imen Rinez; Nadia Ghezal; Rabiaa Haouala

    2017-01-01

    This study was conducted to evaluate the phytochemical content and allelopathic potential of two cabbages botanical varieties leaves, ie. cauliflower (Brassica oleracea var. botrytis) and cabbage turnip (B. oleracea var. gongylodes). Their aqueous and organic extracts were evaluated on lettuce (Lactuca sativa) and one of the most dominant weeds in Tunisia, nettle-leaf goosefoot (Chenopodium murale). Field experiments were conducted to evaluate the smothering potential of the two v...

  11. Global Sensitivity Analysis of the WASIM hydrological model using VARS

    Science.gov (United States)

    Rehan Anis, Muhammad; Haghnegahdar, Amin; Razavi, Saman; Wheater, Howard

    2017-04-01

    Sensitivity analysis (SA) aims to identify the key parameters that affect model performance and it plays an important role in model understanding, calibration, and uncertainty quantification. The increasing complexity of physically-based hydrological models warrants application of comprehensive SA methods for an improved and effective application of hydrological modeling. This study aims to provide a comprehensive sensitivity assessment of WaSiM (Richards version 9.03) hydrological model using a novel and efficient global SA technique Variogram Analysis of Response Surface (VARS), at the experimental Schaefertal catchment (1.44 Km2) in lower Harz Mountains Germany. WaSiM is a distributed hydrological model that can simulate surface and sub-surface flows at various spatial and temporal scales. VARS is a variogram-based framework for global SA that can characterize the full spectrum of sensitivity-related information, thereby providing a comprehensive set of "global" sensitivity metrics with minimal computational cost. Our preliminary SA results show that simulated streamflows in WaSim-ETH are most sensitive to precipitation correction factor followed by parameters related to the snowmelt and flow density. We aim to expand this sensitivity assessment by conducting a more comprehensive global SA with more than 70 parameters from various model components corresponding to interception, infiltration, evapotranspiration, snowmelt, and runoff. This will enable us to provide an enhanced understanding of WaSiM structure and identify dominant controls of its behavior that can be utilized to reduce model prediction uncertainty and reduce parameters needed for calibration.

  12. Metabolic and bioactivity insights into Brassica oleracea var. acephala.

    Science.gov (United States)

    Ferreres, Federico; Fernandes, Fátima; Sousa, Carla; Valentão, Patrícia; Pereira, José A; Andrade, Paula B

    2009-10-14

    Seeds of Brassica oleracea var. acephala (kale) were analyzed by HPLC/UV-PAD/MSn-ESI. Several phenolic acids and flavonol derivatives were identified. The seeds of this B. oleracea variety exhibited more flavonol derivatives than those of tronchuda cabbage (Brassica oleracea var. costata), also characterized in this paper. Quercetin and isorhamnetin derivatives were found only in kale seeds. Oxalic, aconitic, citric, pyruvic, malic, quinic, shikimic, and fumaric acids were the organic acids present in these matrices, malic acid being predominant in kale and citric acid in tronchuda cabbage seeds. Acetylcholinesterase (AChE) inhibitory activity was determined in aqueous extracts from both seeds. Kale leaves and butterflies, larvae, and excrements of Pieris brassicae reared on kale were also evaluated. Kale seeds were the most effective AChE inhibitor, followed by tronchuda cabbage seeds and kale leaves. With regard to P. brassicae material, excrements exhibited stronger inhibitory capacity. These results may be explained by the presence of sinapine, an analogue of acetylcholine, only in seed materials. A strong concentration-dependent antioxidant capacity against DPPH, nitric oxide, and superoxide radicals was observed for kale seeds.

  13. MODEL NON LINIER GARCH (NGARCH UNTUK MENGESTIMASI NILAI VALUE at RISK (VaR PADA IHSG

    Directory of Open Access Journals (Sweden)

    I KOMANG TRY BAYU MAHENDRA

    2015-06-01

    Full Text Available In investment, risk measurement is important. One of risk measure is Value at Risk (VaR. There are many methods that can be used to estimate risk based on VaR framework. One of them Non Linier GARCH (NGARCH model. In this research, determination of VaR used NGARCH model. NGARCH model allowed for asymetric behaviour in the volatility such that “good news” or positive return and “bad news” or negative return. Based on calculations of VaR, the higher of the confidence level and the longer the investment period, the risk was greater. Determination of VaR using NGARCH model was less than GARCH model.

  14. Occurrence of Pyrodinium bahamense var. compressum along the southern coast of the Baja California Peninsula.

    Science.gov (United States)

    Gárate-Lizárraga, Ismael; González-Armas, Rogelio

    2011-03-01

    As part of a continuing toxic microalgae monitoring program, 22 phytoplankton samples were collected from July to November 2010 at several sampling stations along the southern coast of the Baja California Peninsula. For the first time, the toxic dinoflagellate Pyrodinium bahamense var. compressum was found along the southeastern and southwestern coasts of the peninsula. P. bahamense var. bahamense was first observed off San José del Cabo, which is an extension of the range of this variety. Both varieties occur as solitary cells. P. bahamense var. compressum occurred at temperatures ranging between 24.5°C and 31°C, whereas var. P.bahamense occurred at 28.5°C to 29°C, indicating its tropical and subtropical nature. Occurrence of P. bahamense var. compressum along this coastline may be related to El Niño 2009-2010. Copyright © 2011 Elsevier Ltd. All rights reserved.

  15. Empirical analysis on future-cash arbitrage risk with portfolio VaR

    Science.gov (United States)

    Chen, Rongda; Li, Cong; Wang, Weijin; Wang, Ze

    2014-03-01

    This paper constructs the positive arbitrage position by alternating the spot index with Chinese Exchange Traded Fund (ETF) portfolio and estimating the arbitrage-free interval of futures with the latest trade data. Then, an improved Delta-normal method was used, which replaces the simple linear correlation coefficient with tail dependence correlation coefficient, to measure VaR (Value-at-risk) of the arbitrage position. Analysis of VaR implies that the risk of future-cash arbitrage is less than that of investing completely in either futures or spot market. Then according to the compositional VaR and the marginal VaR, we should increase the futures position and decrease the spot position appropriately to minimize the VaR, which can minimize risk subject to certain revenues.

  16. Novel adenovirus encoded virus-like particles displaying the placental malaria associated VAR2CSA antigen

    DEFF Research Database (Denmark)

    Andersson, Anne-Marie C; dos Santos Marques Resende, Mafalda; Salanti, Ali

    2017-01-01

    and the CSA binding region of VAR2CSA has been identified as a promising vaccine target against placental malaria. Here we designed adenovirus encoded virus-like particles (VLP) by co-encoding Simian Immunodeficiency Virus (SIV) gag and VAR2CSA. The VAR2CSA antigen was fused to the transmembrane (TM......The malaria parasite Plasmodium falciparum presents antigens on the infected erythrocyte surface that bind human receptors expressed on the vascular endothelium. The VAR2CSA mediated binding to a distinct chondroitin sulphate A (CSA) is a crucial step in the pathophysiology of placental malaria......CSA fused to HA TM-CT was significantly superior in inducing ID1-ID2a specific antibodies after the first immunization. A sequential study was performed to include a comparison to the soluble VAR2CSA protein vaccine, which has entered a phase I clinical trial (NCT02647489). The results revealed...

  17. Insight into Antigenic Diversity of VAR2CSA-DBL5 epsilon Domain from Multiple Plasmodium falciparum Placental Isolates

    DEFF Research Database (Denmark)

    Gnidehou, Sedami; Jessen, Leon Ivar; Gangnard, Stephane

    2010-01-01

    Background: Protection against pregnancy associated malaria (PAM) is associated with high levels of anti-VAR2CSA antibodies. This protection is obtained by the parity dependent acquisition of anti-VAR2CSA antibodies. Distinct parity-associated molecular signatures have been identified in VAR2CSA ...

  18. Optimizing expression of the pregnancy malaria vaccine candidate, VAR2CSA in Pichia pastoris

    Directory of Open Access Journals (Sweden)

    Narum David L

    2009-06-01

    Full Text Available Abstract Background VAR2CSA is the main candidate for a vaccine against pregnancy-associated malaria, but vaccine development is complicated by the large size and complex disulfide bonding pattern of the protein. Recent X-ray crystallographic information suggests that domain boundaries of VAR2CSA Duffy binding-like (DBL domains may be larger than previously predicted and include two additional cysteine residues. This study investigated whether longer constructs would improve VAR2CSA recombinant protein secretion from Pichia pastoris and if domain boundaries were applicable across different VAR2CSA alleles. Methods VAR2CSA sequences were bioinformatically analysed to identify the predicted C11 and C12 cysteine residues at the C-termini of DBL domains and revised N- and C-termimal domain boundaries were predicted in VAR2CSA. Multiple construct boundaries were systematically evaluated for protein secretion in P. pastoris and secreted proteins were tested as immunogens. Results From a total of 42 different VAR2CSA constructs, 15 proteins (36% were secreted. Longer construct boundaries, including the predicted C11 and C12 cysteine residues, generally improved expression of poorly or non-secreted domains and permitted expression of all six VAR2CSA DBL domains. However, protein secretion was still highly empiric and affected by subtle differences in domain boundaries and allelic variation between VAR2CSA sequences. Eleven of the secreted proteins were used to immunize rabbits. Antibodies reacted with CSA-binding infected erythrocytes, indicating that P. pastoris recombinant proteins possessed native protein epitopes. Conclusion These findings strengthen emerging data for a revision of DBL domain boundaries in var-encoded proteins and may facilitate pregnancy malaria vaccine development.

  19. The chondroitin sulfate A-binding site of the VAR2CSA protein involves multiple N-terminal domains

    DEFF Research Database (Denmark)

    Dahlbäck, Madeleine; Jørgensen, Lars M; Nielsen, Morten A

    2011-01-01

    shown that full-length recombinant VAR2CSA binds specifically to CSA with high affinity, however to date no sub-fragment of VAR2CSA has been shown to interact with CSA with similar affinity or specificity. In this study, we used a biosensor technology to examine the binding properties of a panel...... of truncated VAR2CSA proteins. The experiments indicate that the core of the CSA-binding site is situated in three domains, DBL2X-CIDR(PAM) and a flanking domain, located in the N-terminal part of VAR2CSA. Furthermore, recombinant VAR2CSA subfragments containing this region elicit antibodies with high parasite...

  20. Updates of the HbVar database of human hemoglobin variants and thalassemia mutations.

    Science.gov (United States)

    Giardine, Belinda; Borg, Joseph; Viennas, Emmanouil; Pavlidis, Cristiana; Moradkhani, Kamran; Joly, Philippe; Bartsakoulia, Marina; Riemer, Cathy; Miller, Webb; Tzimas, Giannis; Wajcman, Henri; Hardison, Ross C; Patrinos, George P

    2014-01-01

    HbVar (http://globin.bx.psu.edu/hbvar) is one of the oldest and most appreciated locus-specific databases launched in 2001 by a multi-center academic effort to provide timely information on the genomic alterations leading to hemoglobin variants and all types of thalassemia and hemoglobinopathies. Database records include extensive phenotypic descriptions, biochemical and hematological effects, associated pathology and ethnic occurrence, accompanied by mutation frequencies and references. Here, we report updates to >600 HbVar entries, inclusion of population-specific data for 28 populations and 27 ethnic groups for α-, and β-thalassemias and additional querying options in the HbVar query page. HbVar content was also inter-connected with two other established genetic databases, namely FINDbase (http://www.findbase.org) and Leiden Open-Access Variation database (http://www.lovd.nl), which allows comparative data querying and analysis. HbVar data content has contributed to the realization of two collaborative projects to identify genomic variants that lie on different globin paralogs. Most importantly, HbVar data content has contributed to demonstrate the microattribution concept in practice. These updates significantly enriched the database content and querying potential, enhanced the database profile and data quality and broadened the inter-relation of HbVar with other databases, which should increase the already high impact of this resource to the globin and genetic database community.

  1. Reassessment of phenotypic traits for Saccharomyces bayanus var. uvarum wine yeast strains.

    Science.gov (United States)

    Masneuf-Pomarède, Isabelle; Bely, Marina; Marullo, Philippe; Lonvaud-Funel, Aline; Dubourdieu, Denis

    2010-04-30

    Among Saccharomyces yeast, S. cerevisiae and S. bayanus var. uvarum are related species, sharing the same ecosystem in sympatry. The physiological and technological properties of a large collection of genetically-identified S. bayanus var. uvarum wine strains were investigated in a biometric study and their fermentation behavior was compared at 24 degrees C and 13 degrees C. The variability of the phenotypic traits was considered at both intraspecific and interspecific levels. Low ethanol tolerance at 24 degrees C and production of high levels of 2-phenylethanol and its acetate were clearly revealed as discriminative technological traits, distinguishing the S. bayanus var. uvarum strains from S. cerevisiae. Although some S. bayanus var. uvarum strains produced very small amounts of acetic acid, this was not a species-specific trait, as the distribution of values was similar in both species. Fermentation kinetics at 24 degrees C showed that S. bayanus var. uvarum maintained a high fermentation rate after Vmax, with low nitrogen requirements, but stuck fermentations were observed at later stages. In contrast, a shorter lag phase compared with S.cerevisiae, higher cell viability, and the ability to complete alcoholic fermentation at 13 degrees C confirmed the low-temperature adaptation trait of S.bayanus var. uvarum. This study produced a phenotypic characterization data set for a collection of S. bayanus var. uvarum strains, thus paving the way for industrial developments using this species as a new genetic resource. Copyright 2010 Elsevier B.V. All rights reserved.

  2. BASIC ANATOMICAL PROPERTIES of Ammannia auriculata var. arenaria (LYTHRACEAE

    Directory of Open Access Journals (Sweden)

    Mehmet AYBEKE

    2016-12-01

    Full Text Available This study was performed in order to define some anatomical characteristics of Ammannia auriculata Willd. var. arenaria (Kunth Koehne (Lythraceae to ensure a proper identification of the species and prevent confusion with other plants. Roots, leaves and stems of the plants were fixed in Formalin-Aceto-Alcohol (FAA, stained with various dyes, examined under a microscope and their photos were taken. The microscopic investigations of the plant parts revealed that 1 the leaf anatomy showed partly mezophyte character, the stem and roots beared aquatic characters with a wide aeranchymatic cortex and 2 thick lignified secondary xylem tissue in the roots and stems were located outwards of the stele. The results were compared with those of similar studies.

  3. VAR Analysis of the Monetary Transmission Mechanism in Kyrgyzstan

    Directory of Open Access Journals (Sweden)

    Nurlan ATABAEV

    2013-05-01

    Full Text Available This article examines the effects of monetary transmission on real output and price level in Kyrgyzstan which is very important issue for central banks. We analyzed the relationships between the money supply, real output, price level, interest rate, credit and real exchange rate by using the vector autoregression approach (VAR and monthly data for 2003-2011. As a result the interest rate channel remains weak, on the other hand it have been revealed that the credit channel has some affects to real output, the exchange rate channel affects the prices. Exchange rate channel remains still the most effective channel. Based on these results, it can be argued that government can use credit and interest rate channel in increasing real output, and the exchange rate channel in achieving price stability in Kyrgyzstan.

  4. Triterpenoid biosynthesis in tissue cultures of Glycyrrhiza glabra var. glandulifera.

    Science.gov (United States)

    Ayabe, S; Takano, H; Fujita, T; Furuya, T; Hirota, H; Takahashi, T

    1990-08-01

    The incorporation of [1-(14)C]acetate and [2(14) C]mevalonate into free and esterified triterpen-3-ols was examined in original plant organs and tissue cultures of Glycyrrhiza glabra var. glandulifera. Both substrates labeled β-amyrin, an oleanane-type triterpene, and cycloartenol and 24-methylenecycloartanol, both of which are intermediates of phytosterol biosynthesis. The label in esterified triterpenes was distributed mainly in phytosterol intermediates, but not in β-amyrin. The ratio of βamyrin formation among the three triterpenes from [2-(14)C]mevalonate was relatively high in stolon segments and in root cultures, but negligible in callus cultures. Administration of a specific inhibitor of squalene-2, 3-epoxide:cycloartenol (lanosterol) cyclase caused a marked increase of β-amyrin synthesis in root suspension cultures, and of 24-methylenecycloartanol synthesis in cell suspension cultures, from [2-(14)C]mevalonate.

  5. Hot air convective dehydration characteristics of Daucus carota var. Nantes

    Directory of Open Access Journals (Sweden)

    Raees-ul Haq

    2015-12-01

    Full Text Available The present work focuses on experimental and theoretical study of air dehydration kinetics of Daucus carota var. Nantes in laboratory scale drying chamber. Steam blanching as a pretreatment was applied prior to dehydration of shreds and the results indicated a gradual decrease in drying time from 2.9 to 5.5% in temperature range of 50–70°C, for steam blanched samples in comparison to untreated carrots. Four different mathematical drying models (Newton, Page, Modified Page and Henderson and Pabis were evaluated for goodness of fit by comparing their respective R2, χ2, and RMSE parameters. Comparison of the statistical parameters led to conclusion that Page model showed a better quality of fit and presents dehydration characteristics in better way to obtain drying curves than any other model.

  6. Tillers induction in Bactris gasipaes var. gasipaes seedlings

    Directory of Open Access Journals (Sweden)

    Ernani Augusto Ochekoski Mossanek

    2014-04-01

    Full Text Available Bactris gasipaes produces heart-of-palm. Peach palm is a perennial crop that has a tillering capacity, being an alternative to illegal extraction. There is a lack of studies about vegetative propagation technics for this species. The present study aimed to analyze different tillering induction methods in Bactris gasipaes var. gasipaes seedlings in four different seasons. The treatments were: 1 stem bending; 2 stem bending and application of 150 mg kg-1 of benzylaminopurine; 3 stem bending and application of 150 mg kg-1 of gibberellic acid and; 4 stem girdling. The experimental design was random with 4 replicates of 20 plants per treatment. Anatomical analyses were conducted at the stem, and the tillering and mortality of the treated plants were evaluated. It was possible to identify the stem tissues and the meristematic apex site by anatomical analysis. The stem bending treatments were inefficient; but girdling presented potential as tillers inducer.

  7. Utilization of Leek (Allium ampeloprasum var. porrum) for inulinase production.

    Science.gov (United States)

    Tasar, Ozden Canli; Erdal, Serkan; Algur, Omer Faruk

    2015-08-18

    Inulinase production by Rhodotorula glutinis was carried out in this study, using leek (Allium ampeloprasum var. porrum) as an alternative carbon source due to its high inulin content and easy availability. Taguchi orthogonal array (OA) design of experiment (DOE) was used to optimize fermentation conditions. For this purpose, five influential factors (leek concentration, pH, incubation temperature, agitation speed, and fermentation time) related to inulinase production were selected at four convenient levels. The results showed that maximum inulinase activity was obtained as 30.89 U/mL, which was close to the predicted result (30.24 U/mL). To validate the obtained results, analysis of variance (ANOVA) was employed. Consequently, leek has a great potential as an effective and economical carbon source for inulinase production, and the use of Taguchi DOE enhanced enzyme activity about 2.87-fold when compared with the unoptimized condition.

  8. Forecasting Macedonian Business Cycle Turning Points Using Qual Var Model

    Directory of Open Access Journals (Sweden)

    Petrovska Magdalena

    2016-09-01

    Full Text Available This paper aims at assessing the usefulness of leading indicators in business cycle research and forecast. Initially we test the predictive power of the economic sentiment indicator (ESI within a static probit model as a leading indicator, commonly perceived to be able to provide a reliable summary of the current economic conditions. We further proceed analyzing how well an extended set of indicators performs in forecasting turning points of the Macedonian business cycle by employing the Qual VAR approach of Dueker (2005. In continuation, we evaluate the quality of the selected indicators in pseudo-out-of-sample context. The results show that the use of survey-based indicators as a complement to macroeconomic data work satisfactory well in capturing the business cycle developments in Macedonia.

  9. Kloning Gen CRY dari Bacillus turingiensis var. kurstaki

    Directory of Open Access Journals (Sweden)

    Nur Rahmi Ardiani

    1998-12-01

    Full Text Available Bacillus thuringiensis is an entomopathogenic organism. The pathogenic effect is caused by crystalline protein, δ-endotoxin, which is encoded by the cry gene. The aim of this study was to clone the cry gene from B. thuringiensis var. kurstaki with a genomic library approach. HindIII digested B. thuringiensis total DNA was ligated to HindIII digested of pUC19, and then used to transform Escherichia coli DH5α. Selection of transformans carrying recombinant was done by α-complementation and a recombinant clone containing the cry gene was further screened by non-radioactive hybridization method using a probe synthesized from the conserved region of the published cry genes. The result suggested that two recombinant clones with the insert size of 3.4 kb and 2.0 kb, respectively, carrying the cry gene. Key words: cloning, cry gene, Bacillus thuringiensis

  10. Citogenética de Guazuma ulmifolia var. Ulmifolia (Sterculiaceae

    Directory of Open Access Journals (Sweden)

    Fernando Tapia-Pastrana

    2007-01-01

    Full Text Available Se utilizó una metodología de extendido en superficie y secado al aire para obtener por vez primera el cariotipo somático de una población de Guazuma ulmifolia var. ulmifolia. El número cromosómico diploide 2n = 16 obtenido a partir de meristemos radiculares confirma recuentos anteriores. La fórmula cariotípica fue 14m + 2st con una ligera asimetría (T.F.% = 42,19. La longitud cromosómica total haploide fue de 11,65 µm con un intervalo cromosómico de 1,11 - 2,05 µm. Los organizadores nucleolares asociados a constricciones secundarias ubicados en el par 3 (m y el polimorfismo que exhibe el par 8 (st pueden ser empleados como marcadores citogenéticos en futuros estudios de otras especies y variedades del género.

  11. Aberrant meiotic behavior in Agave tequilana Weber var. azul

    Directory of Open Access Journals (Sweden)

    Rodríguez-Garay Benjamin

    2002-10-01

    Full Text Available Abstract Background Agave tequilana Weber var. azul, is the only one variety permitted by federal law in México to be used for tequila production which is the most popular contemporary alcoholic beverage made from agave and recognized worldwide. Despite the economic, genetic, and ornamental value of the plant, it has not been subjected to detailed cytogenetic research, which could lead to a better understanding of its reproduction for future genetic improvement. The objective of this work was to study the meiotic behavior in pollen mother cells and its implications on the pollen viability in Agave tequilana Weber var. azul. Results The analysis of Pollen Mother Cells in anaphase I (A-I showed 82.56% of cells with a normal anaphase and, 17.44% with an irregular anaphase. In which 5.28% corresponded to cells with side arm bridges (SAB; 3.68% cells with one bridge and one fragment; 2.58% of irregular anaphase showed cells with one or two lagging chromosomes and 2.95% showed one acentric fragment; cells with two bridges and cells with two bridges and one acentric fragment were observed in frequencies of 1.60% and 1.35% respectively. In anaphase II some cells showed bridges and fragments too. Aberrant A-I cells had many shrunken or empty pollen grains (42.00% and 58.00 % viable pollen. Conclusion The observed meiotic irregularities suggest that structural chromosome aberrations have occurred, such as heterozygous inversions, sister chromatid exchanges, deletions and duplications which in turn are reflected in a low pollen viability.

  12. Cloning of the repertoire of individual Plasmodium falciparum var genes using transformation associated recombination (TAR.

    Directory of Open Access Journals (Sweden)

    Annette Gaida

    Full Text Available One of the major virulence factors of the malaria causing parasite is the Plasmodium falciparum encoded erythrocyte membrane protein 1 (PfEMP1. It is translocated to It the membrane of infected erythrocytes and expressed from approximately 60 var genes in a mutually exclusive manner. Switching of var genes allows the parasite to alter functional and antigenic properties of infected erythrocytes, to escape the immune defense and to establish chronic infections. We have developed an efficient method for isolating VAR genes from telomeric and other genome locations by adapting transformation-associated recombination (TAR cloning, which can then be analyzed and sequenced. For this purpose, three plasmids each containing a homologous sequence representing the upstream regions of the group A, B, and C var genes and a sequence homologous to the conserved acidic terminal segment (ATS of var genes were generated. Co-transfection with P. falciparum strain ITG2F6 genomic DNA in yeast cells yielded 200 TAR clones. The relative frequencies of clones from each group were not biased. Clones were screened by PCR, as well as Southern blotting, which revealed clones missed by PCR due to sequence mismatches with the primers. Selected clones were transformed into E. coli and further analyzed by RFLP and end sequencing. Physical analysis of 36 clones revealed 27 distinct types potentially representing 50% of the var gene repertoire. Three clones were selected for sequencing and assembled into single var gene containing contigs. This study demonstrates that it is possible to rapidly obtain the repertoire of var genes from P. falciparum within a single set of cloning experiments. This technique can be applied to individual isolates which will provide a detailed picture of the diversity of var genes in the field. This is a powerful tool to overcome the obstacles with cloning and assembly of multi-gene families by simultaneously cloning each member.

  13. Cloning of the repertoire of individual Plasmodium falciparum var genes using transformation associated recombination (TAR).

    Science.gov (United States)

    Gaida, Annette; Becker, Marion M; Schmid, Christoph D; Bühlmann, Tobias; Louis, Edward J; Beck, Hans-Peter

    2011-03-07

    One of the major virulence factors of the malaria causing parasite is the Plasmodium falciparum encoded erythrocyte membrane protein 1 (PfEMP1). It is translocated to It the membrane of infected erythrocytes and expressed from approximately 60 var genes in a mutually exclusive manner. Switching of var genes allows the parasite to alter functional and antigenic properties of infected erythrocytes, to escape the immune defense and to establish chronic infections. We have developed an efficient method for isolating VAR genes from telomeric and other genome locations by adapting transformation-associated recombination (TAR) cloning, which can then be analyzed and sequenced. For this purpose, three plasmids each containing a homologous sequence representing the upstream regions of the group A, B, and C var genes and a sequence homologous to the conserved acidic terminal segment (ATS) of var genes were generated. Co-transfection with P. falciparum strain ITG2F6 genomic DNA in yeast cells yielded 200 TAR clones. The relative frequencies of clones from each group were not biased. Clones were screened by PCR, as well as Southern blotting, which revealed clones missed by PCR due to sequence mismatches with the primers. Selected clones were transformed into E. coli and further analyzed by RFLP and end sequencing. Physical analysis of 36 clones revealed 27 distinct types potentially representing 50% of the var gene repertoire. Three clones were selected for sequencing and assembled into single var gene containing contigs. This study demonstrates that it is possible to rapidly obtain the repertoire of var genes from P. falciparum within a single set of cloning experiments. This technique can be applied to individual isolates which will provide a detailed picture of the diversity of var genes in the field. This is a powerful tool to overcome the obstacles with cloning and assembly of multi-gene families by simultaneously cloning each member.

  14. Yield spreads as predictors of economic activity: a real-time VAR analysis

    OpenAIRE

    Kishor, N. Kundan; Koenig, Evan F.

    2010-01-01

    We undertake a real-time VAR analysis of the usefulness of the term spread, the junk-bond spread, the ISM's New Orders Index, and broker/dealer equity for predicting growth in non-farm employment. To get around the "apples and oranges" problem described by Koenig, Dolmas and Piger (2003), we augment each VAR we consider with a flexible state-space model of employment revisions. This methodology produces jobs forecasts consistently superior to those obtained using conventional VAR analysis. Th...

  15. VT-1161 Protects Immunosuppressed Mice from Rhizopus arrhizus var. arrhizus Infection.

    Science.gov (United States)

    Gebremariam, Teclegiorgis; Wiederhold, Nathan P; Fothergill, Annette W; Garvey, Edward P; Hoekstra, William J; Schotzinger, Robert J; Patterson, Thomas F; Filler, Scott G; Ibrahim, Ashraf S

    2015-12-01

    We studied the efficacy of the investigational drug VT-1161 against mucormycosis. VT-1161 had more potent in vitro activity against Rhizopus arrhizus var. arrhizus than against R. arrhizus var. delemar. VT-1161 treatment demonstrated dose-dependent plasma drug levels with prolonged survival time and lowered tissue fungal burden in immunosuppressed mice infected with R. arrhizus var. arrhizus and was as effective as high-dose liposomal amphotericin B treatment. These results support further development of VT-1161 against mucormycosis. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

  16. Positive selection of Plasmodium falciparum parasites with multiple var2csa-type PfEMP1 genes during the course of infection in pregnant women

    DEFF Research Database (Denmark)

    Sander, Adam F; Salanti, Ali; Lavstsen, Thomas

    2011-01-01

    multiple genes coding for different VAR2CSA proteins, and parasites with >1 var2csa gene appear to be more common in pregnant women with placental malaria than in nonpregnant individuals. We present evidence that, in pregnant women, parasites containing multiple var2csa-type genes possess a selective...... advantage over parasites with a single var2csa gene. Accumulation of parasites with multiple copies of the var2csa gene during the course of pregnancy was also correlated with the development of antibodies involved in blocking VAR2CSA adhesion. The data suggest that multiplicity of var2csa-type genes...

  17. Refusion of zircaloy scraps by VAR (vacuum arc remelting): preliminary results; Fusao de cavacos de zircaloy por VAR: resultados preliminares

    Energy Technology Data Exchange (ETDEWEB)

    Pereira, L.A.T.; Mucsi, C.S.; Sato, I.M.; Rossi, J.L.; Martinez, L.G., E-mail: lgallego@ipen.b [Instituto de Pesquisas Energeticas e Nucleares (IPEN/CNEN-SP), Sao Paulo, SP (Brazil); Correa, H.P.S. [Universidade Federal do Mato Grosso do Sul (UFMS), Campo Grande, MS (Brazil); Orlando, M.T.D. [Universidade Federal do Espirito Santo (UFES), Vitoria, ES (Brazil)

    2010-07-01

    Fuel elements and structural components of the core of PWR nuclear reactors are made in zirconium alloys known as Zircaloy. Machining chips and shavings resulting from the manufacturing of these components can not be discarded as scrap, once these alloys are strategic materials for the nuclear area, have high costs and are not produced in Brazil on an industrial bases and, consequently, are imported for the manufacture of nuclear fuel. The reuse of Zircaloy chips has economic, strategic and environmental aspects. In this work is proposed a process for recycling Zircaloy scraps using a VAR (vacuum arc remelting) furnace in order to obtain ingots suitable for the manufacture of components of the reactors. The ingots obtained are being studied in order to verify the influence of processing on composition and microstructure of the remelted material. In this work are presented preliminary results of the composition of obtained ingots compared to start material and the resulting microstructure. (author)

  18. Evidence for in vitro and in vivo expression of the conserved VAR3 (type 3) plasmodium falciparum erythrocyte membrane protein 1

    DEFF Research Database (Denmark)

    Wang, Christian W; Lavstsen, Thomas; Bengtsson, Dominique C

    2012-01-01

    ABSTRACT: BACKGROUND: Members of the Plasmodium falciparum erythrocyte membrane protein 1 (PfEMP1) adhesion antigen family are major contributors to the pathogenesis of P. falciparum malaria infections. The PfEMP1-encoding var genes are among the most diverse sequences in nature, but three genes...... of VAR3 expression on the infected erythrocyte surface has never been presented, and var3 genes have been proposed to be transcribed and expressed differently from the rest of the var gene family members. METHODS: In this study, parasites expressing VAR3 PfEMP1 were generated using anti-VAR3 antibodies...... of var3 was investigated. RESULTS: Var3 is transcribed and its protein product expressed on the surface of infected erythrocytes. The VAR3-expressing parasites were better recognized by children's IgG than a parasite line expressing a Group B var gene. Two in 130 children showed increased recognition...

  19. Flavonoids and phenolic acids of Nepeta cataria L. var. citriodora (Becker) Balb. (Lamiaceae)

    National Research Council Canada - National Science Library

    Modnicki, Daniel; Tokar, Magdalena; Klimek, Barbara

    2007-01-01

    Luteolin 7-O-glucuronide, luteolin 7-O-glucurono-(1-->6)-glucoside, apigenin 7-O-glucuronide as well as free aglycones luteolin and apigenin have been isolated from lemon catnip herb (Nepeta cataria L. var citriodora...

  20. Rabdosia japonica var. glaucocalyx Flavonoids Fraction Attenuates Lipopolysaccharide-Induced Acute Lung Injury in Mice

    National Research Council Canada - National Science Library

    Chu, Chun-Jun; Xu, Nai-Yu; Li, Xian-Lun; Xia, Long; Zhang, Jian; Liang, Zhi-Tao; Zhao, Zhong-Zhen; Chen, Dao-Feng

    2014-01-01

    Rabdosia japonica var. glaucocalyx (Maxim.) Hara, belonging to the Labiatae family, is widely used as an anti-inflammatory and antitumor drug for the treatment of different inflammations and cancers. Aim of the Study...

  1. Final Critical Habitat for the Huachuca water umbel (Lilaeopsis schaffneriana var. recurva)

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — To provide the user with a general idea of areas where final critical habitat for Huachuca water umbel (Lilaeopsis schaffneriana var. recurva) occur based on the...

  2. Final Critical Habitat for the Wenatchee Mountains Checkermallow (Sidalcea oregana var. calva)

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — To provide the user with a general idea of areas where final critical habitat for Wenatchee Mountains checker-mallow (Sidalcea oregana var. calva) occur based on the...

  3. Final Critical Habitat for the Kincaid's lupine (Lupinus sulphureus (=oreganus) ssp. kincaidii (=var. kincaidii))

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — These data identify, in general, the areas where final critical habitat for the Kincaid's lupine (Lupinus sulphureus (=oreganus) ssp. kincaidii (=var. kincaidii))...

  4. [Mutagenic effects of gamma-rays on Coix lacryma-jobi var. ma-yuen].

    Science.gov (United States)

    Shen, Xiao-xia; Wang, Zhi-an; Yu, Xu-ping

    2007-06-01

    To study the mutagenic effect of gamma-rays on Coix lacryma-jobi var. ma-yuen. Physiological and mutagenic effects of gamma-rays on C. lacryma-jobi var. ma-yuen dormant seeds were studied. The germination percentage, seeding survival, seeding height and root length of M1 plants and the frequency of chlorophyll mutation in M2 generation were selected as criteria. The gamma-rays showed obvious inhibitory action to the seedling growth, and a strong ability in inducing the chlorophyll mutation. The gamma-rays is one kind of C. lacryma-jobi var. ma-yuen effective mutagen. The appropriate dose of gamma-rays is 450 Gy for C. lacryma-jobi var. ma-yuen dormant seeds.

  5. Molecular typing of wine yeast strains Saccharomyces bayanus var. uvarum using microsatellite markers.

    Science.gov (United States)

    Masneuf-Pomarède, I; Le Jeune, C; Durrens, P; Lollier, M; Aigle, M; Dubourdieu, D

    2007-01-01

    The Saccharomyces bayanus var. uvarum yeasts are associated with spontaneous fermentation of must. Some strains were shown to be enological yeasts of interest in different winemaking processes. The molecular typing of S. bayanus var. uvarum at the strain level has become significant for wine microbiologists. Four microsatellite loci were defined from the exploration of genomic DNA sequence of S. bayanus var. uvarum. The 40 strains studied were homozygote for the locus considered. The discriminating capacity of the microsatellite method was found to be equal to that of karyotypes analysis. Links between 37 indigenous strains with the same geographic origin could be established through the analysis of microsatellite patterns. The analysis of microsatellite polymorphism is a reliable method for wine S. bayanus var. uvarum strains and their hybrids with Saccharomyces cerevisiae identification in taxonomic, ecological studies and winemaking applications.

  6. Two new eriophyid mite species associated with Clematis terniflora var. mandshurica in China (Acari, Eriophyidae

    Directory of Open Access Journals (Sweden)

    Yan Dong

    2016-10-01

    Full Text Available Two new eriophyid mite species associated with Clematis terniflora var. mandshurica, namely Aculops jilinensis sp. n. and Phyllocoptes terniflores sp. n., are described. Both species infest the tender leaves of host plants, inducing severe curling and blistering.

  7. Several domains from VAR2CSA can induce Plasmodium falciparum adhesion-blocking antibodies

    Directory of Open Access Journals (Sweden)

    Theander Thor G

    2010-01-01

    Full Text Available Abstract Background Malaria caused by Plasmodium falciparum can result in several different syndromes with severe clinical consequences for the about 200 million individuals infected each year. During pregnancy, women living in endemic areas become susceptible to malaria due to lack of antibodies against a unique P. falciparum membrane protein, named VAR2CSA. This antigen is not expressed in childhood infections, since it binds chondroitin sulphate A (CSA expressed on the intervillous space in the placenta. A vaccine appears possible because women acquire protective antibodies hindering sequestration in the placenta as a function of parity. A challenge for vaccine development is to design small constructs of this large antigen, which can induce broadly protective antibodies. It has previously been shown that one domain of VAR2CSA, DBL4-FCR3, induces parasite adhesion-blocking antibodies. In this study, it is demonstrated that other domains of VAR2CSA also can induce antibodies with inhibitory activity. Methods All VAR2CSA domains from the 3D7 and HB3 parasites were produced in Baculovirus-transfected insect cells. Groups of three rats per protein were immunized and anti-sera were tested for surface reactivity against infected erythrocytes expressing FCR3 VAR2CSA and for the ability to inhibit FCR3CSA parasite adhesion to CSA. The fine specificity of the immune sera was analysed by VAR2CSA peptide arrays. Results Inhibitory antibodies were induced by immunization with DBL3-HB3 T1 and DBL1-3D7. However, unlike the previously characterised DBL4-FCR3 response the inhibitory response against DBL1-3D7 and DBL3-HB3 T1 was poorly reproduced in the second rounds of immunizations. Conclusion It is possible to induce parasite adhesion-blocking antibodies when immunizing with a number of different VAR2CSA domains. This indicates that the CSA binding site in VAR2CSA is comprised of epitopes from different domains.

  8. The classic European hyperinflations revisited : testing the Cagan model using a cointegrated VAR approach

    DEFF Research Database (Denmark)

    Engsted, Tom

    1994-01-01

    I tidligere studier af de klassiske Europæiske hyperinflationer antages det at stød til pengeefterspørgslen er ikke-stationære. I artiklen vises det v.h.a. kointegrationstests at denne antagelse er fejlagtig. Med udgangspunkt i en kointegreret VAR model findes det, at der under de Europæiske...... hyperinflationer var et betragteligt fremadskuende element i agenterne pengeefterspørgsel. Udgivelsesdato: AUG...

  9. Taxonomic study on Japanese Salvia (Lamiaceae): Phylogenetic position of S. akiensis, and polyphyletic nature of S. lutescens var. intermedia

    Science.gov (United States)

    Takano, Atsuko

    2017-01-01

    Abstract Both Salvia akiensis and S. lutescens (Lamiaceae) are endemic to Japan. Salvia akiensis was recently described in 2014 in the Chugoku (= SW Honshu) region, and each four varieties of S. lutescens distributed allopatrically. Among varieties in S. lutescens, var. intermedia show a disjunctive distribution in the Kanto (=E Honshu) and Kinki (= W Honshu) regions. Recent field studies of S. lutescens var. intermedia revealed several morphological differences between the Kanto and Kinki populations. Here, I evaluated these differences among Salvia lutescens var. intermedia and its allies with morphological analysis and molecular phylogenetic analyses of nuclear ribosomal DNA (internal and external transcribed spacer regions) and plastid DNA (ycf1-rps15 spacer, rbcL, and trnL-F) sequences. Both morphological analysis and molecular phylogenetic analyses showed that S. lutescens var. intermedia from the Kinki region and var. lutescens were closely related to each other. However, var. intermedia from the Kanto region exhibited an association with S. lutescens var. crenata and var. stolonifera, which also grew in eastern Japan, rather than var. intermedia in the Kinki region. These results indicated that S. lutescens var. intermedia is not a taxon with a disjunctive distribution, but a combination of two or more allopatric taxa. Present study also suggested that S. akiensis was most closely related to S. omerocalyx. PMID:28781560

  10. Valor nutricional e potencial nutracêutico de inflorescências de couve-nabo (Brassica napus var napus) e couve-tronchuda (Brassica oleraceae var costata).

    OpenAIRE

    Barros, Lillian; Batista, Cátia Emanuela Oliveira; Carvalho, Ana Maria; Ferreira, Isabel C.F.R.

    2012-01-01

    Na Península Ibérica as verduras (silvestres ou tradicionalmente cultivadas) têm sido alimentos importantes na dieta humana. O valor nutricional de verduras e os seus benefícios para a saúde têm sido reconhecidos como importantes alvos de investigação. Os grelos, inflorescências da couve-nabo (Brassica napus L. var. napus) e os espigos, inflorescências da couve-tronchuda (Brassica oleracea L. var. costata DC.) são exemplos de espécies tradicionalmente cultivadas e amplamente consumidas nas re...

  11. Hibridação interespecífica entre Gossmum hirsutum L. var. latifolium e G. Herbaceum L. var. africanum Interespecific hybridization between Gossypium hirsutum var. latifolium and G. Herbaceum var. africanum

    Directory of Open Access Journals (Sweden)

    Ederaldo José Chiavegato

    1985-01-01

    Full Text Available Foi obtida, pelos autores, variabilidade genética para resistência da fibra do algodoeiro a partir da hibridação entre a espécie alotetraplóide cultivada Gossypium hirsutum L. var. latifolium Hutch. e a espécie diplóide selvagem G. herbaceum L. vai. africanum Hutch. A metodologia empregada e as características agronômicas e tecnológicas da fibra do híbrido são descritas e discutidas. Visando à duplicação do número de cromossomos da espécie diplóide, foram realizados nove tratamentos com o alcalóide colchicina, em solução aquosa e em adição com pasta de lanolina, com diferentes concentrações e tempo de ação para o tratamento de sementes, radicelas e gemas apicais: revelou-se mais eficiente o de gemas apicais com colchicina a 1%, em pasta de lanolina, durante 32 horas. Diversos cruzamentos das plantas duplicadas com variedades comerciais de algodoeiro levaram à obtenção de híbrido estéril. A seguir, dois retrocruzamentos foram realizados, sendo que, a partir do primeiro, a fertilidade foi restaurada. Estas plantas, com características agronômicas promissoras, possuem grande variabilidade para resistência da fibra, num nível superior ao de G. hirsutum.Genetic variability was obtained by the authors for fiber strenght in cotton, through hybridization between the cultivated alotetraploid species Gossypium hirsutum L. var. latifolium Hutch. and the wild diploid species G. herbaceum L. africanum Hutch. The underlying methods and the hybrid's characteristics are reported and described. As a first step, the number of chromosomes in the diploid species was duplicated. Nine treatments with aqueous colchicina or colchicina in lanolina paste were carried out, comprising several concentrations and times of application to seeds, radicles and apical buds of the main stem. Success was obtained by treating apical buds with lanolina paste containing 1% colchicina, during 32 hours. Two hundred fourty five crosses between the

  12. Micropropagation of an endangered species Pinus armandii var. Amamiana

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    Katsuaki Ishii

    2013-12-01

    Full Text Available For micropropagation via organ culture, mature embryos were excised from the seeds of Pinus armandii. Franch. var. amamiana (Koidz. Hatusima, an endangered species only inhabiting the south west islands of Japan. Adventitious buds were induced on the surface of the embryo on 1/2 DCR medium containing BAP, and they grew shoots after subculturing to medium containing activated charcoal or a low concentration of thidiazuron. From the elongated shoots, root primordia and roots were induced in medium containing IBA as an auxine. We found that a low concentration of zeatin or BAP added to the medium was beneficial for plant regeneration of mature embryos of this species. For micropropagation via somatic embryogenesis, embryogenic cell suspensions were induced from a mature and immature seed of P. armandii var. amamiana on MS liquid medium supplemented with 1 ľM 2, 4-D and 3 ľM BAP. The suspensions were incubated in the dark at 250. Induced suspension cells were transferred to ammonium free MS liquid medium supplemented with 1 ľM 2, 4-D, 3 ľM BAP and 30m M L-glutamine and subcultured every 2 weeks. In the other set of the experiment, the induction rate of somatic embryogenesis was high with ammonium free half strength MS medium. In order to develop somatic embryos, the suspension cells were transferred to ammonium free MS medium supplemented with 10 ľM ABA, 0.2% activated charcoal, 10% PEG (MW6000, 30m M L-glutamine and 6% maltose. The cultures were incubated under a 16h light/8h dark photoperiod. After 1-2 months of culture, differentiation of embryos progressed and cotyledonary embryos were obtained. These embryos were transferred on ammonium free MS solid medium under 16 h photoperiod. After 2-3 weeks plantlets with roots and green cotyledons were obtained. Plantlets were transplanted to vermiculite containing modified MS liquid medium in 200 ml culture flasks, then out planted after habituation procedure.

  13. The effect of extract of Punica granatum var. pleniflora for treatment of minor recurrent aphthous stomatitis.

    Science.gov (United States)

    Gavanji, Shahin; Larki, Behrouz; Bakhtari, Azizollah

    2014-06-01

    Herbal drugs are considered alternative agents and have been used for several years around the world. Recurrent aphthous stomatitis (RAS) is one of the most common problems recognized by dentists and skin specialists. This problem is characterized by recurring, painful, small oral mucosal ulcers with a round or oval aspect that mostly appear in keratinized mucosa, cheeks, and on the surface of the mouth under the tongue. In our experiment, the alcoholic and water extracts of Punica granatum var. pleniflora, P. granatum var. Sweet Alak, and P. granatum var. Saveh Black were tested on minor RAS. The study was carried out using the double-blind method. The study population consisted of 210 participants, of whom 69 were females (32%) and 141 were males (68%). In addition to checking several factors, the pain and the degree of the participant's satisfaction had been determined based on visual analog scale. Data analysis was done in the form of a nonparametric method using Kruskal-Wallis test and SPSS version 20 software. The results show that the alcoholic and water extracts of P. granatum var. pleniflora have a meaningful therapeutic effect on minor RAS. Results from the antioxidant activity and its relation to total phenolics show that P. granatum var. pleniflora and P. granatum var. Sweet Alak are rich in phenols. The water and alcoholic extracts of P. granatum varpleniflora decreased the entire time of complete treatment, and the treatment was meaningfully satisfactory for patients who participated in this experiment.

  14. Feasibility of Stochastic Voltage/VAr Optimization Considering Renewable Energy Resources for Smart Grid

    Science.gov (United States)

    Momoh, James A.; Salkuti, Surender Reddy

    2016-06-01

    This paper proposes a stochastic optimization technique for solving the Voltage/VAr control problem including the load demand and Renewable Energy Resources (RERs) variation. The RERs often take along some inputs like stochastic behavior. One of the important challenges i. e., Voltage/VAr control is a prime source for handling power system complexity and reliability, hence it is the fundamental requirement for all the utility companies. There is a need for the robust and efficient Voltage/VAr optimization technique to meet the peak demand and reduction of system losses. The voltages beyond the limit may damage costly sub-station devices and equipments at consumer end as well. Especially, the RERs introduces more disturbances and some of the RERs are not even capable enough to meet the VAr demand. Therefore, there is a strong need for the Voltage/VAr control in RERs environment. This paper aims at the development of optimal scheme for Voltage/VAr control involving RERs. In this paper, Latin Hypercube Sampling (LHS) method is used to cover full range of variables by maximally satisfying the marginal distribution. Here, backward scenario reduction technique is used to reduce the number of scenarios effectively and maximally retain the fitting accuracy of samples. The developed optimization scheme is tested on IEEE 24 bus Reliability Test System (RTS) considering the load demand and RERs variation.

  15. Working Alliance Inventory applied to Virtual and Augmented Reality (WAI-VAR: Psychometrics and Therapeutic Outcomes

    Directory of Open Access Journals (Sweden)

    Marta eMiragall

    2015-10-01

    Full Text Available This study examines the psychometric properties of the Working Alliance Inventory-Short (WAI-S adaptation to Virtual Reality (VR and Augmented Reality (AR therapies (WAI-VAR. The relationship between the therapeutic alliance with VR and AR and clinically significant change (CSC is also explored. Seventy-five patients took part in this study (74.7% women, Mage= 34.41. Fear of flying and adjustment disorder patients received VR therapy, and cockroach phobia patients received AR therapy. Psychometric properties, CSC, one-way ANOVA, Spearman’s Correlations and Multiple Regression were calculated. The WAI-VAR showed a unidimensional structure, high internal consistency and adequate convergent validity. Not changed patients scored lower on the WAI-VAR than improved and recovered patients. Correlation between the WAI-VAR and CSC was moderate. The best fitting model for predicting CSC was a linear combination of the therapeutic alliance with therapist (WAI-S and the therapeutic alliance with VR and AR (WAI-VAR, due to the latter variable slightly increased the percentage of variability accounted for in CSC. The WAI-VAR is the first validated instrument to measure the therapeutic alliance with VR and AR in research and clinical practice. This study reveals the importance of the quality of the therapeutic alliance with technologies in achieving positive outcomes in the therapy.

  16. Semi-nonparametric VaR forecasts for hedge funds during the recent crisis

    Science.gov (United States)

    Del Brio, Esther B.; Mora-Valencia, Andrés; Perote, Javier

    2014-05-01

    The need to provide accurate value-at-risk (VaR) forecasting measures has triggered an important literature in econophysics. Although these accurate VaR models and methodologies are particularly demanded for hedge fund managers, there exist few articles specifically devoted to implement new techniques in hedge fund returns VaR forecasting. This article advances in these issues by comparing the performance of risk measures based on parametric distributions (the normal, Student’s t and skewed-t), semi-nonparametric (SNP) methodologies based on Gram-Charlier (GC) series and the extreme value theory (EVT) approach. Our results show that normal-, Student’s t- and Skewed t- based methodologies fail to forecast hedge fund VaR, whilst SNP and EVT approaches accurately success on it. We extend these results to the multivariate framework by providing an explicit formula for the GC copula and its density that encompasses the Gaussian copula and accounts for non-linear dependences. We show that the VaR obtained by the meta GC accurately captures portfolio risk and outperforms regulatory VaR estimates obtained through the meta Gaussian and Student’s t distributions.

  17. Arundina graminifolia var. revoluta (Arethuseae, Orchidaceae) has fern-type rheophyte characteristics in the leaves.

    Science.gov (United States)

    Yorifuji, Eri; Ishikawa, Naoko; Okada, Hiroshi; Tsukaya, Hirokazu

    2015-03-01

    Morphological and molecular variation between Arundina graminifolia var. graminifolia and the dwarf variety, A. graminifolia var. revoluta, was examined to assess the validity of their taxonomic characteristics and genetic background for identification. Morphological analysis in combination with field observations indicated that A. graminifolia var. revoluta is a rheophyte form of A. graminifolia characterized by narrow leaves, whereas the other morphological characteristics described for A. graminifolia var. revoluta, such as smaller flowers and short stems, were not always accompanied by the narrower leaf phenotype. Molecular analysis based on matK sequences indicated that only partial differentiation has occurred between A. graminifolia var. graminifolia and A. graminifolia var. revoluta. Therefore, we should consider the rheophyte form an ecotype rather than a variety. Anatomical observations of the leaves revealed that the rheophyte form of A. graminifolia possessed characteristics of the rheophytes of both ferns and angiosperms, such as narrower palisade tissue cells and thinner spongy tissue cells, as well as fewer cells in the leaf-width direction and fewer mesophyll cell layers.

  18. Working alliance inventory applied to virtual and augmented reality (WAI-VAR): psychometrics and therapeutic outcomes.

    Science.gov (United States)

    Miragall, Marta; Baños, Rosa M; Cebolla, Ausiàs; Botella, Cristina

    2015-01-01

    This study examines the psychometric properties of the Working Alliance Inventory-Short (WAI-S) adaptation to Virtual Reality (VR) and Augmented Reality (AR) therapies (WAI-VAR). The relationship between the therapeutic alliance (TA) with VR and AR and clinically significant change (CSC) is also explored. Seventy-five patients took part in this study (74.7% women, M age = 34.41). Fear of flying and adjustment disorder patients received VR therapy, and cockroach phobia patients received AR therapy. Psychometric properties, CSC, one-way ANOVA, Spearman's Correlations and Multiple Regression were calculated. The WAI-VAR showed a unidimensional structure, high internal consistency and adequate convergent validity. "Not changed" patients scored lower on the WAI-VAR than "improved" and "recovered" patients. Correlation between the WAI-VAR and CSC was moderate. The best fitting model for predicting CSC was a linear combination of the TA with therapist (WAI-S) and the TA with VR and AR (WAI-VAR), due to the latter variable slightly increased the percentage of variability accounted for in CSC. The WAI-VAR is the first validated instrument to measure the TA with VR and AR in research and clinical practice. This study reveals the importance of the quality of the TA with technologies in achieving positive outcomes in the therapy.

  19. ACAT inhibitory activity of exudates from Calocedrus macrolepis var. formosana.

    Science.gov (United States)

    Hsieh, Yu-Hsin; Chen, Kuan-Jung; Chien, Shih-Chang; Cheng, Wen-Ling; Xiao, Jun-Hong; Wang, Sheng-Yang

    2012-12-01

    Cholesterol acyltransferase (ACAT) is an enzyme controlling cholesterol esterification in cells. Large amounts of cholesterol esters accumulate in macrophages and smooth muscle cells of blood vessel walls resulting in the initial stages of atherosclerosis. Thus, atherosclerosis might be inhibited through inhibition of the activity of ACAT. In the present study, we identified by spectral analysis and chromatographic quantification that ferruginol was the most abundant component of exudates secreted from the wounding site of Calocedrus macrolepis Kurz var. formosana. Results obtained from the cholesterol absorption assay revealed that ferruginol exhibited a significant inhibitory activity on cholesterol absorption in mice macrophages (RAW 264.7 cell). Based on the results from analyzing the ratio of cholesterol esterification, ferruginol dose-dependently suppressed cholesterol esterification and the IC50 value was 2.0 microg/mL. In conclusion, ferruginol revealed strong inhibitory activities that retarded the absorption and esterification of cholesterol in cells. Our finding indicates that ferruginol might possess a potential for development as a pharmaceutical product for preventing arteriosclerosis.

  20. Deterioration of expanded polystyrene caused by Aureobasidium pullulans var. melanogenum.

    Science.gov (United States)

    Castiglia, Valeria C; Kuhar, Francisco

    2015-01-01

    An expanded-polystyrene factory located in northern Buenos Aires reported unusual dark spots causing esthetic damage in their production. A fungal strain forming black-olive colonies on extract malt agar medium was isolated from the damaged material and identified as Aureobasidium pullullans var. melanogenum. This fungus is particularly known for its capacity to produce hydrolytic enzymes and a biodegradable extracellular polysaccharide known as pullulan, which is used in the manufacture of packaging material for food and medicine. Laboratory tests were conducted to characterize its growth parameters. It was found that the organism was resistant to a wide range of pHs but did not survive at temperatures over 65°C. The proposed action plan includes drying of the material prior to packaging and disinfection of the machinery used in the manufacturing process and of the silos used for raw material storage. Copyright © 2014 Asociación Argentina de Microbiología. Publicado por Elsevier España, S.L.U. All rights reserved.

  1. Two New Flavonol Glycosides from Sarcopyramis bodinieri var. delicate

    Directory of Open Access Journals (Sweden)

    Yan Qiu

    2008-06-01

    Full Text Available Detailed chemical investigation of the herb Sarcopyramis bodinieri var. delicate resulted in the isolation of two new flavonol glycosides, namely, isorhamnetin-3-O-(6′′-OE- feruloyl-β-D-glucopyranoside (1 and isorhamnetin-3-O-(6′′-O-E-feruloyl-β-Dgalactopyranoside (2. In addition, four known compounds, quercetin-3-O-(6′′-acetyl-β-Dglucopyranoside (3, isorhamnetin-3-O-(6′′-acetyl-β-D-glucopyranoside (4, quercetin-3- O-(6′′-O-E-p-coumaroyl-β-D-glucopyranoside (5, and isorhamnetin-3-O-(6′′-O-E-pcoumaroyl- β-D-glucopyranoside (6 were obtained. The structures of the new isolates were determined by extensive spectroscopic analysis.

  2. Gene effect and heterosis in Capsicum baccatum var. pendulum

    Directory of Open Access Journals (Sweden)

    Artur Mendes Medeiros

    2014-06-01

    Full Text Available Heterosis has been exploited in Capsicum annuum commercial hybrids; however, the use of heterosis in C. baccatum still remains to be explored, and studies related to the genetics and breeding of this species are scarce. The present study aimed to estimate the combining ability of five parents of C. baccatum var. pendulum , representatives of two distinct types of fruits (namely, lady's finger and cambuci, to calculate heterosis and to evaluate the agronomic potential of the hybrids for yield and fruit quality. The hybrids were produced from a complete diallel without reciprocals. The parents and hybrids were evaluated under field conditions in a randomized block design with three replications, and the following traits were assessed: number of fruits per plant, fruit weight, yield per plant, fruit length, fruit diameter and soluble solids. All traits were significant for general and specific combining ability, indicating that additive and non-additive effects are involved in the genetic control of these traits. The hybrid combinations between the types lady's finger and cambuci provided elongated fruits with smaller diameters and greater weight compared with the parents of the cambuci type. However, these factors did not lead to a significant increase in the yield per plant due to the decreased number of fruits except in hybrid UENF 1616 x UENF 1732. Considering only the parents and hybrids within each type of fruit, the genitor UENF 1624 (lady's finger and the hybrid UENF 1639 x UENF 1732 (cambuci x cambuci stood out for achieving a high yield per plant.

  3. MORFOGÉNESIS IN VITRO DE Pseudotsuga menziesii VAR. glauca

    Directory of Open Access Journals (Sweden)

    María Guadalupe Carrillo-Benítez

    2011-01-01

    Full Text Available Se evaluó la respuesta morfogénica a partir de embriones cigóticos cultivados in vitro de semilla almacenada (un año de Pseudotsuga menziesii var. glauca recolectada en Tlaxcala. Las semillas fueron desinfestadas con detergente y H2O2 (3 % v/v durante 48 h en agitación a 50 rpm, cultivadas en el medio de Murashige y Skoog (1962 sin reguladores. La germinación ocurrió después de siete días y posteriormente subcultivados a un medio MS con 2,4-D (3 mg·L-1 y BA (1 mg·L-1. Con los callos obtenidos en un medio HS se evaluaron tres concentraciones de ABA para promover formación de estructuras embrionarias, presentándose el mejor tratamiento con concentración de 10.0 mg·L-1 (P<.0001. El mejor desarrollo de plántulas se presentó empleando un medio Murashige y Skoog (1962 con sacarosa al 6 %. Se usaron micorrizas para mejor adaptación de plántulas a suelo. No hubo formación de raíces.

  4. Antioxidant activity of Egyptian Eucalyptus camaldulensis var. brevirostris leaf extracts.

    Science.gov (United States)

    El-Ghorab, Ahmed H; El-Massry, Khaled F; Marx, Friedhelm; Fadel, Hoda M

    2003-02-01

    Leaves from Eucalvptus camaldulensis var. brevirostris trees, planted in the Nile delta in Egypt, were examined for the antioxidant activity of their nonvolatile compounds. The extracts obtained by ethanol digestion and by supercritical fluid extraction (SFE; CO2 with 15% ethanol) showed the most promising antioxidative activities. In order to identify the most active compounds, both extracts were subjected to a semipreparative reversed-phase HPLC separation, the main fractions were collected, tested for antioxidative activity and analysed by different chromatographical and spectroscopical methods for identification of the most relevant compounds. Gallic and ellagic acid were found to be the prevailing antioxidants in the ethanolic extract. The main two compounds of the SFE extract with antioxidative activity revealed to be flavones. To a high degree of probability they were identified as 5-hydroxy-7,4'-dimethoxy flavone and 5-hydroxy-7,4'-dimethoxy-8-methyl flavone, respectively. The extracts obtained by ethanoldigestion were dried and administered to rats for toxicity evaluation (up to 3 g/kg body weight). No mortality was observed which indicates a very low lethality of the tested extract.

  5. Micropropagation of globe artichoke (Cynara cardunculus L. var. scolymus).

    Science.gov (United States)

    Iapichino, Giovanni

    2013-01-01

    The globe artichoke (Cynara cardunculus L. var. scolymus) is a perennial plant cultivated in the Mediterranean region and the Americas for its edible young flower heads. Although vegetative propagation by offshoots or by "ovoli" (underground dormant axillary buds) has been the primary method of propagation, the potential for the diffusion of diseases and the phenotypic variability can be very high. The propagation of this species by axillary shoot proliferation from in vitro-cultured meristems produces systemic pathogen-free plants and a higher multiplication rate as compared to that obtained by conventional agamic multiplication. Axillary shoot proliferation can be induced from excised shoot apices cultured on Murashige and Skoog agar solidified medium supplemented with various concentrations of cytokinins and auxins, depending on genotype. For the production of virus-free plants, meristems, 0.3-0.8 mm long are excised from shoot apices and surface sterilized. The transfer of artichoke microshoots to a medium lacking cytokinins or with low cytokinin concentration is critical for rooting. Adventitious roots develop within 3-5 weeks after transfer to root induction MS medium containing NAA or IAA at various concentrations. However, in vitro rooting frequency rate is dependent on the genotype and the protocol used. Acclimatization of in vitro microshoots having 3-4 roots is successfully accomplished; plantlets develop new roots in ex vitro conditions and continue to grow.

  6. la Universidad Simón Bolívar

    Directory of Open Access Journals (Sweden)

    Jennie Brand Barajas

    2003-01-01

    Full Text Available La presente investigación es un estudio de caso sobre la identidad institucional de los docentes de la Universidad Simón Bolívar (USB desde la filosofía, ideario y misión, los cuales la definen como una institución de educación superior privada católica con carisma franciscano. La pregunta central es: ¿cómo se ha identificado el docente con la USB? Los propósitos parten de un análisis de los documentos de la universidad para explicitar la identidad y, a partir de ello, conocer el perfil del docente para explorar cómo se relaciona con la institución. Se tiene como supuesto que la falta de una definición explícita de la identidad institucional por parte de la USB obstaculiza la identificación del docente. El andamiaje teórico se basa en la construcción y reconstrucción colectiva de la identidad institucional.

  7. A New Neolignan from Coix lachryma-jobi var. mayuen.

    Science.gov (United States)

    Kim, Sun Young; Choi, Chun Whan; Hong, Seong Su; Shin, HyungSeok; Oh, Joa Sub

    2016-02-01

    A new neolignan, named coixide A (1), along with fifteen known compounds, (7R,8S)-3'-demethyl-dehydrodiconiferyl alcohol-3'-O-β-glucopyranoside (2), (7R,8)-3'-demethyl-9'-butoxy-dehydrodiconiferyl-3'-O-β-glucopyranoside (3),adenosine (4), 2-O-caffeoyl isocitricacid (5), pseudolaroside A (6), 2-hydroxy-7-methoxy-(2H)-1,4-benzoxazin-3(4H)-one (7), 2-O-β-glucopyranosyl-7-methoxy-2H-1,4-benzoxazin-3(4H)-one (8), 2-O-β-glucopyranosyl-4-hydroxy-7- methoxy-2H-1,4-benzoxazin-3(4H)-one (9), 2-O-β-D-glucopyranosyl-7-hydroxy-2H-1,4-benzoxazin-3(4H)-one (10), p-coumaric acid ethyl ester (11), caffeic acid ethyl ester (12), p-coumaric acid (13), cis-N-p-coumaroyltyramine (14) trans-N-p-coumaroyltyramine (15), and coixol (16) have been isolated from Coix lachryma-jobi var. mayuen. Their chemical structures were elucidated by chemical evidence on the basis of spectroscopic and MS data, and as well as by comparison with those reported.

  8. Toxicological assessment of nattokinase derived from Bacillus subtilis var. natto.

    Science.gov (United States)

    Lampe, Bradley J; English, J Caroline

    2016-02-01

    Subtilisin NAT, commonly known as "nattokinase," is a fibrinolytic enzyme produced by the bacterial strain B. subtilis var. natto, which plays a central role in the fermentation of soybeans into the popular Japanese food natto. Recent studies have reported on the potential anticoagulatory and antihypertensive effects of nattokinase administration in humans, with no indication of adverse effects. To evaluate the safety of nattokinase in a more comprehensive manner, several GLP-compliant studies in rodents and human volunteers have been conducted with the enzyme product, NSK-SD (Japan Bio Science Laboratory Co., Ltd., Japan). Nattokinase was non-mutagenic and non-clastogenic in vitro, and no adverse effects were observed in 28-day and 90-day subchronic toxicity studies conducted in Sprague-Dawley rats at doses up to 167 mg/kg-day and 1000 mg/kg-day, respectively. Mice inoculated with 7.55 × 10(8) CFU of the enzyme-producing bacterial strain showed no signs of toxicity or residual tissue concentrations of viable bacteria. Additionally consumption of 10 mg/kg-day nattokinase for 4 weeks was well tolerated in healthy human volunteers. These findings suggest that the oral consumption of nattokinase is of low toxicological concern. The 90-day oral subchronic NOAEL for nattokinase in male and female Sprague-Dawley rats is 1000 mg/kg-day, the highest dose tested. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

  9. Three New Clerodane Diterpenes from Polyalthia longifolia var. pendula

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    Tung-Ho Wu

    2014-02-01

    Full Text Available Three new clerodane diterpenes, (4→2-abeo-cleroda-2,13E-dien-2,14-dioic acid (1, (4→2-abeo-2,13-diformyl-cleroda-2,13E-dien-14-oic acid (2, and 16(R&S- methoxycleroda-4(18,13-dien-15,16-olide (3, were isolated from the unripe fruit of Polyalthia longifolia var. pendula (Annonaceae together with five known compounds (4–8. The structures of all isolates were determined by spectroscopic analysis. The anti-inflammatory activity of the isolates was evaluated by testing their inhibitory effect on NO production in LPS-stimulated RAW 264.7 macrophages. Among the isolated compounds, 16-hydroxycleroda-3,13-dien-15,16-olide (6 and 16-oxocleroda-3,13-dien-15-oic acid (7 showed promising NO inhibitory activity at 10 µg/mL, with 81.1% and 86.3%, inhibition, respectively.

  10. Ortopnea y hemoptisis en un varón joven

    Directory of Open Access Journals (Sweden)

    Jacobo Silva

    2005-04-01

    Full Text Available Varón de 21 años visitado en urgencias por ortopnea, hemoptisis y disnea. La radiografía detectó redistribución en hemitórax izquierdo, el ecocardiograma una masa intraauricular izquierda que protruía en el ventrículo izquierdo a través de la válvula mitral, produciendo obstrucción crítica, y la tomografía computarizada (TC una masa que ocupaba la aurícula izquierda desde la vena pulmonar superior izquierda (Fig. 1. Por vía transeptal superior se reseca una masa multilobulada de 6 × 7 cm, con base de implantación en el techo auricular (Fig. 2, que se reconstruyó con pericardio autólogo. La histopatología confirma el diagnóstico de leiomiosarcoma de vena pulmonar muy diferenciado. Al paciente se le dio el alta a los siete días.

  11. Agrobacterium tumefaciens-mediated transformation of Narcissus tazzeta var. chinensis.

    Science.gov (United States)

    Lu, Gang; Zou, Qingcheng; Guo, Deping; Zhuang, Xiaoying; Yu, Xiaolin; Xiang, Xun; Cao, Jiashu

    2007-09-01

    Phytoene synthase (PSY), as a key regulatory enzyme for carotene biosynthesis, plays an important role in regulating color formation in many species. In the present study, a protocol was developed for the transformation of Narcissus tazzeta var chinensis using Agrobacterium tumefaciens strain LBA4404 harboring a binary vector pCAMBIA1301 plasmid which contained an antisense phytoene synthase gene, a reporter beta-glucuronidase gene and a selectable marker hygromycin phosphotransferase gene. Effects of some factors on efficiency of transformation and regeneration were examined. Preculture of the explants for 6 days before inoculation enhanced the transient GUS expression. The addition of acetosyringone (AS) at 100 micromol l(-1) for inoculation and a period of 3 days co-cultivation yielded efficient transient GUS expression. Transformants were obtained through selection on MS medium containing 5 mg l(-1) 6-benzylaminopurine (BA), 0.1 mg l(-1)alpha-naphthalene acetic acid (NAA) and 40 mg l(-1) hygromycin. The transformation frequency was 1.24% based on PCR analysis of gus gene. One or two copies of transgene were demonstrated in different transformations by Southern blotting analyses. Northern blotting results confirmed that the transcription of the endogenous psy gene in transgenic plants was inhibited or silenced. The method reported here provides new opportunities for improvement of quality traits of Narcissus tazzeta via genetic transformation.

  12. Effect of intercropping Panicum maximum var. Ntchisi and Lablab purpureus on the growth, herbage yield and chemical composition of Panicum maximum var. Ntchisi at different harvesting times.

    Science.gov (United States)

    Ojo, V O A; Dele, P A; Amole, T A; Anele, U Y; Adeoye, S A; Hassan, O A; Olanite, J A; Idowu, O J

    2013-11-15

    The study was conducted to evaluate the effect of intercropping Panicum maximum var. Ntchisi and Lablab purpureus on the growth, herbage yield and chemical composition of P. maximum var. Ntchisi at different harvesting times at the Teaching and Research farm, Federal University of Agriculture, Abeokuta in a randomized complete block design. Samples were collected at different harvesting times (8, 10, 12, 14 weeks after planting). The growth parameters which were plant height, leaf length, leaf number and tiller number measured showed that the intercropping of grass with legume were higher than in the sole plot of P. maximum var. Ntchisi. The plant yield was consistently higher (p < 0.05) in intercropped forages than in sole throughout the harvesting times. The crude protein contents of the forages were also higher for the intercropped across the treatments. The values of the fibre components were significantly different (p < 0.05) at different harvesting times and it was increasing as the harvesting time was increasing. From this study, considering the herbage yield and chemical composition of intecropping Panicum maximum var. Ntchisi and Lablab purpureus, they can be grazed by ruminant animals or harvested at 12 weeks after planting when the quality and quantity will support livestock productivity and can be conserved to be fed to ruminant animals during dry season when feed availability and quality are extremely low.

  13. Enfoques diferentes para medir el valor en riesgo (VaR y su comparación. Aplicaciones

    Directory of Open Access Journals (Sweden)

    Josefina Martínez Barbeito

    2005-01-01

    Full Text Available Se inicia la ponencia con una sucinta revisión de los conceptos del VAR. A continuación, se consideran y valoran de forma crítica los distintos enfoques para medir el VAR: Delta-Normal; Delta-Gamma; Simulación histórica; Simulación Monte Carlo y Contraste Estrés. Finalmente, se hace referencia a algunas aplicaciones del VAR.

  14. Enfoques diferentes para medir el valor en riesgo (VaR) y su comparación. Aplicaciones

    OpenAIRE

    Josefina Martínez Barbeito; Julio García Villalón

    2005-01-01

    Se inicia la ponencia con una sucinta revisión de los conceptos del VAR. A continuación, se consideran y valoran de forma crítica los distintos enfoques para medir el VAR: Delta-Normal; Delta-Gamma; Simulación histórica; Simulación Monte Carlo y Contraste Estrés. Finalmente, se hace referencia a algunas aplicaciones del VAR.

  15. Comparative ozone responses of cutleaf coneflowers (Rudbeckia laciniata var. digitata, var. ampla) from Rocky Mountain and Great Smoky Mountains National Parks, USA.

    Science.gov (United States)

    Neufeld, Howard S; Johnson, Jennifer; Kohut, Robert

    2018-01-01

    Cutleaf coneflower (Rudbeckia laciniata L. var. digitata) is native to Great Smoky Mountains National Park (GRSM) and an ozone bioindicator species. Variety ampla, whose ozone sensitivity is less well known, is native to Rocky Mountain National Park (ROMO). In the early 2000s, researchers found putative ozone symptoms on var. ampla and rhizomes were sent to Appalachian State University to verify that the symptoms were the result of ozone exposure. In 2011, potted plants were exposed to ambient ozone from May to August. These same plants were grown in open-top chambers (OTCs) in 2012 and 2013, and exposed to charcoal-filtered (CF), non-filtered (NF), elevated ozone (EO), NF+50ppb in 2012 for 47days and NF+30/NF+50ppb ozone in 2013 for 36 and 36days, respectively. Ozone symptoms similar to those found in ROMO (blue-black adaxial stippling) were reproduced both in ambient air and in the OTCs. Both varieties exhibited foliar injury in the OTCs in an exposure-dependent manner, verifying that symptoms resulted from ozone exposure. In two of the three study years, var. digitata appeared more sensitive than var. ampla. Exposure to EO caused reductions in ambient photosynthetic rate (A) and stomatal conductance (gs) for both varieties. Light response curves indicated that ozone reduced A, gs, and the apparent quantum yield while it increased the light compensation point. In CF air, var. ampla had higher light saturated A (18.2±1.04 vs 11.6±0.37μmolm(-2)s(-1)), higher light saturation (1833±166.7 vs 1108±141.7μmolm(-2)s(-1)), and lower Ci/Ca ratio (0.67±0.01 vs 0.77±0.01) than var. digitata. Coneflowers in both Parks are adversely affected by exposure to ambient ozone and if ozone concentrations increase in the Rocky Mountains, greater amounts of injury on var. ampla can be expected. Copyright © 2017 Elsevier B.V. All rights reserved.

  16. VARS-TOOL: A Comprehensive, Efficient, and Robust Sensitivity Analysis Toolbox

    Science.gov (United States)

    Razavi, S.; Sheikholeslami, R.; Haghnegahdar, A.; Esfahbod, B.

    2016-12-01

    VARS-TOOL is an advanced sensitivity and uncertainty analysis toolbox, applicable to the full range of computer simulation models, including Earth and Environmental Systems Models (EESMs). The toolbox was developed originally around VARS (Variogram Analysis of Response Surfaces), which is a general framework for Global Sensitivity Analysis (GSA) that utilizes the variogram/covariogram concept to characterize the full spectrum of sensitivity-related information, thereby providing a comprehensive set of "global" sensitivity metrics with minimal computational cost. VARS-TOOL is unique in that, with a single sample set (set of simulation model runs), it generates simultaneously three philosophically different families of global sensitivity metrics, including (1) variogram-based metrics called IVARS (Integrated Variogram Across a Range of Scales - VARS approach), (2) variance-based total-order effects (Sobol approach), and (3) derivative-based elementary effects (Morris approach). VARS-TOOL is also enabled with two novel features; the first one being a sequential sampling algorithm, called Progressive Latin Hypercube Sampling (PLHS), which allows progressively increasing the sample size for GSA while maintaining the required sample distributional properties. The second feature is a "grouping strategy" that adaptively groups the model parameters based on their sensitivity or functioning to maximize the reliability of GSA results. These features in conjunction with bootstrapping enable the user to monitor the stability, robustness, and convergence of GSA with the increase in sample size for any given case study. VARS-TOOL has been shown to achieve robust and stable results within 1-2 orders of magnitude smaller sample sizes (fewer model runs) than alternative tools. VARS-TOOL, available in MATLAB and Python, is under continuous development and new capabilities and features are forthcoming.

  17. High level of var2csa transcription by Plasmodium falciparum isolated from the placenta

    DEFF Research Database (Denmark)

    Tuikue Ndam, Nicaise G; Salanti, Ali; Bertin, Gwladys

    2005-01-01

    Plasmodium falciparum parasites that bind to chondroitin sulphate A (CSA) express unique variant surface antigens that are involved in the placental sequestration that precipitates pregnancy-associated malaria (PAM). Two var gene subfamilies, var1csa and var2csa, have been associated with CSA...... binding. We show here that placental P. falciparum isolates highly transcribed var2csa but not var1csa. var2csa was not transcribed or was only minimally transcribed by parasites isolated from nonpregnant women. Placental parasites that effectively bound to placental chondroitin sulphate proteoglycans...

  18. Chemical Constituents from Solanum glabratum Dunal var. sepicula

    Directory of Open Access Journals (Sweden)

    Essam Abdel-Sattar

    2015-01-01

    Full Text Available In the course of screening program of Saudi plants for their potential biological activity, the methanolic extract of Solanum glabratum Dunal var. sepicula as well as its different fractions were tested for its possible cytoxicity in prostate cancer (PC3 and colon cancer (HT29 cell lines using the MTT assay. In the present study, three spirostan saponins and one flavonoid glycoside were isolated from the active n-butanol fraction through a bio-guided fractionation approach. Two new saponin glycosides were identified as 23-β-D-glucopyranosyl (23S, 25R-spirost-5-en-3, 23 diol 3-O-α-L-rhamnopyranosyl-(1→2-O-[α-L-rhamnopyranosyl-(1→4]-β-D-glucopyranoside (2 and (25R-spirost-5-en-3-ol 3-O-α-L-rhamnopyranosyl-(1→2-O-[β-D-glucopyranosyl-(1→3]-β-D-galactopyranoside (3. In addition, two known compounds were also isolated and identified as isorhamnetin-3-O-α-L-rhamnopyranosyl (1→6 β-D-glucopyranoside (1 and (23S, 25R-spirost-5-en-3, 23 diol 3-O-α-L-rhamnopyranosyl-(1→2-O-[α-L-rhamnopyranosyl-(1→4]-β-D-glucopyranoside (4. The structures of the isolated compounds were elucidated based on their MS, one dimensional and extensive two dimensional NMR spectral data. Among the isolated metabolites, compound 3 showed the highest cytotoxic activity in both PC3 and HT29 cell lines with an IC 50 values of 14.8 and 19.5 m g/mL, respectively.

  19. Alastrim, varíola é? Is allastrim small pox?

    Directory of Open Access Journals (Sweden)

    Luiz Antonio Teixeira

    2000-06-01

    Full Text Available Este artigo trata de uma controvérsia científica havida em São Paulo entre 1910 e 1913, que opôs dois destacados médicos da cidade: Antonio Carini, diretor do Instituto Pasteur de São Paulo, e Emílio Ribas, diretor do Serviço Sanitário. A questão em jogo era a classificação de uma doença que reinava no estado. Para Carini tratava-se de varíola, para Ribas era uma entidade mórbida chamada de alastrim. A polêmica teve início na Sociedade de Medicina e Cirurgia e, posteriormente, migrou para outros fóruns, incorporando novos personagens. A apresentação e discussão dessa controvérsia objetiva contribuiu para a compreensão do processo de construção e estabilização de um consenso científico no campo das ciências biomédicas.Between 1910 and 1913, two renowned physicians in the city of São Paulo found themselves engaged in a scientific controversy regarding the classification of a disease then assailing the state. Antonio Carini, director of the Instituto Pasteur de São Paulo, believed the illness to be small pox, while Emílio Ribas, director of the Serviço Sanitário, claimed it was allastrim, or milk pox. The controversy started in the Sociedade de Medicina e Cirurgia but later migrated to other forums and came to incorporate other figures as well. This presentation and discussion of the polemic is meant as a contribution to our understanding of the process by which a scientific consensus is constructed and solidified within the field of the biomedical sciences.

  20. A comparison between EDA-EnVar and ETKF-EnVar data assimilation techniques using radar observations at convective scales through a case study of Hurricane Ike (2008)

    Science.gov (United States)

    Shen, Feifei; Xu, Dongmei; Xue, Ming; Min, Jinzhong

    2017-07-01

    This study examines the impacts of assimilating radar radial velocity (Vr) data for the simulation of hurricane Ike (2008) with two different ensemble generation techniques in the framework of the hybrid ensemble-variational (EnVar) data assimilation system of Weather Research and Forecasting model. For the generation of ensemble perturbations we apply two techniques, the ensemble transform Kalman filter (ETKF) and the ensemble of data assimilation (EDA). For the ETKF-EnVar, the forecast ensemble perturbations are updated by the ETKF, while for the EDA-EnVar, the hybrid is employed to update each ensemble member with perturbed observations. The ensemble mean is analyzed by the hybrid method with flow-dependent ensemble covariance for both EnVar. The sensitivity of analyses and forecasts to the two applied ensemble generation techniques is investigated in our current study. It is found that the EnVar system is rather stable with different ensemble update techniques in terms of its skill on improving the analyses and forecasts. The EDA-EnVar-based ensemble perturbations are likely to include slightly less organized spatial structures than those in ETKF-EnVar, and the perturbations of the latter are constructed more dynamically. Detailed diagnostics reveal that both of the EnVar schemes not only produce positive temperature increments around the hurricane center but also systematically adjust the hurricane location with the hurricane-specific error covariance. On average, the analysis and forecast from the ETKF-EnVar have slightly smaller errors than that from the EDA-EnVar in terms of track, intensity, and precipitation forecast. Moreover, ETKF-EnVar yields better forecasts when verified against conventional observations.

  1. Antidepressant-like Effect of Kaempferol and Quercitirin, Isolated from Opuntia ficus-indica var. saboten.

    Science.gov (United States)

    Park, Soo-Hyun; Sim, Yun-Beom; Han, Pyung-Lim; Lee, Jin-Koo; Suh, Hong-Won

    2010-06-01

    Opuntia ficus-indica var. saboten. is widely cultivated in Jeju Island (South Korea) for use in manufacture of health foods. This study described antidepressant effect of two flavonoids (kaempferol and quercitrin) isolated from the Opuntia ficus-indica var. saboten. The expression of the hypothalamic POMC mRNA or plasma β-endorphin levels were increased by extract of Opuntia ficus-indica var. saboten or its flavoniods administered orally. In addition, antidepressant activity was studied using tail suspension test (TST), forced swimming test (FST) and rota-rod test in chronically restraint immobilization stress group in mice. After restraint stress (2 hrs/day for 14 days), animals were kept in cage for 14 days without any further stress, bet with drugs. Mice were fed with a diet supplemented for 14 days and during the behavioral test period with kaempferol or quercitrin (30 mg/kg/day). POMC mRNA or plasma β-endorphin level was increased by extract of Opuntia ficus-indica var. saboten and its flavoniods. In addition, immobility time in TST and FST was significantly reduced by kaempferol or quercitrin. In rota-rod test, the time of permanence was maintained to the semblance of control group in turning at 15 rpm. Our results suggest that two flavonoids (kaempferol and quercitrin) isolated from the Opuntia ficus-indica var. saboten. show a potent antidepressant effect.

  2. Antidepressant-like Effect of Kaempferol and Quercitirin, Isolated from Opuntia ficus-indica var. saboten

    Science.gov (United States)

    Park, Soo-Hyun; Sim, Yun-Beom; Han, Pyung-Lim; Lee, Jin-Koo

    2010-01-01

    Opuntia ficus-indica var. saboten. is widely cultivated in Jeju Island (South Korea) for use in manufacture of health foods. This study described antidepressant effect of two flavonoids (kaempferol and quercitrin) isolated from the Opuntia ficus-indica var. saboten. The expression of the hypothalamic POMC mRNA or plasma β-endorphin levels were increased by extract of Opuntia ficus-indica var. saboten or its flavoniods administered orally. In addition, antidepressant activity was studied using tail suspension test (TST), forced swimming test (FST) and rota-rod test in chronically restraint immobilization stress group in mice. After restraint stress (2 hrs/day for 14 days), animals were kept in cage for 14 days without any further stress, bet with drugs. Mice were fed with a diet supplemented for 14 days and during the behavioral test period with kaempferol or quercitrin (30 mg/kg/day). POMC mRNA or plasma β-endorphin level was increased by extract of Opuntia ficus-indica var. saboten and its flavoniods. In addition, immobility time in TST and FST was significantly reduced by kaempferol or quercitrin. In rota-rod test, the time of permanence was maintained to the semblance of control group in turning at 15 rpm. Our results suggest that two flavonoids (kaempferol and quercitrin) isolated from the Opuntia ficus-indica var. saboten. show a potent antidepressant effect. PMID:22110339

  3. PERHITUNGAN VaR PORTOFOLIO SAHAM MENGGUNAKAN DATA HISTORIS DAN DATA SIMULASI MONTE CARLO

    Directory of Open Access Journals (Sweden)

    WAYAN ARTHINI

    2012-09-01

    Full Text Available Value at Risk (VaR is the maximum potential loss on a portfolio based on the probability at a certain time.  In this research, portfolio VaR values calculated from historical data and Monte Carlo simulation data. Historical data is processed so as to obtain stock returns, variance, correlation coefficient, and variance-covariance matrix, then the method of Markowitz sought proportion of each stock fund, and portfolio risk and return portfolio. The data was then simulated by Monte Carlo simulation, Exact Monte Carlo Simulation and Expected Monte Carlo Simulation. Exact Monte Carlo simulation have same returns and standard deviation  with historical data, while the Expected Monte Carlo Simulation satistic calculation similar to historical data. The results of this research is the portfolio VaR  with time horizon T=1, T=10, T=22 and the confidence level of 95 %, values obtained VaR between historical data and Monte Carlo simulation data with the method exact and expected. Value of VaR from both Monte Carlo simulation is greater than VaR historical data.

  4. VarR controls colonization and virulence in the marine macroalgal pathogen Nautella italica R11

    Directory of Open Access Journals (Sweden)

    Melissa eGardiner

    2015-10-01

    Full Text Available There is increasing evidence to suggest that macroalgae (seaweeds are susceptible to infectious disease. However, to date, little is known about the mechanisms that facilitate the colonization and virulence of microbial seaweed pathogens. One well-described example of a seaweed disease is the bleaching of the red alga Delisea pulchra, which can be caused by the bacterium Nautella italica R11, a member of the Roseobacter clade. This pathogen contains a unique luxR-type gene, varR, which we hypothesize controls its colonization and virulence. We show here that a varR knock-out strain is deficient in its ability to cause disease in D. pulchra and is defective in biofilm formation and attachment to a common algal polysaccharide. Moreover complementation of the varR gene in trans can restore these functions to the wild type levels. Proteomic analysis of bacterial cells in planktonic and biofilm growth highlight the potential importance of nitrogen scavenging, mobilization of energy reserves, and stress resistance in the biofilm lifestyle of N. italica R11. Moreover, we show that VarR regulates the expression of a specific subset of biofilm-associated proteins. Taken together these data suggest that VarR controls colonization and persistence of N. italica R11 on the surface of a macroalgal host and that it is an important regulator of virulence.

  5. Designing a VAR2CSA-based vaccine to prevent placental malaria.

    Science.gov (United States)

    Fried, Michal; Duffy, Patrick E

    2015-12-22

    Placental malaria (PM) due to Plasmodium falciparum is a major cause of maternal, fetal and infant mortality, but the mechanisms of pathogenesis and protective immunity are relatively well-understood for this condition, providing a path for vaccine development. P. falciparum parasites bind to chondroitin sulfate A (CSA) to sequester in the placenta, and women become resistant over 1-2 pregnancies as they acquire antibodies that block adhesion to CSA. The protein VAR2CSA, a member of the PfEMP1 variant surface antigen family, mediates parasite adhesion to CSA, and is the leading target for a vaccine to prevent PM. Obstacles to PM vaccine development include the large size (∼ 350 kD), high cysteine content, and sequence variation of VAR2CSA. A number of approaches have been taken to identify the combination of VAR2CSA domains and alleles that can induce broadly active antibodies that block adhesion of heterologous parasite isolates to CSA. This review summarizes these approaches, which have examined VAR2CSA fragments for binding activity, antigenicity with naturally acquired antibodies, and immunogenicity in animals for inducing anti-adhesion or surface-reactive antibodies. Two products are expected to enter human clinical studies in the near future based on N-terminal VAR2CSA fragments that have high binding affinity for CSA, and additional proteins preferentially expressed by placental parasites are also being examined for their potential contribution to a PM vaccine. Copyright © 2015. Published by Elsevier Ltd.

  6. Value at risk (VaR in uncertainty: Analysis with parametric method and black & scholes simulations

    Directory of Open Access Journals (Sweden)

    Humberto Banda Ortiz

    2014-07-01

    Full Text Available VaR is the most accepted risk measure worldwide and the leading reference in any risk management assessment. However, its methodology has important limitations which makes it unreliable in contexts of crisis or high uncertainty. For this reason, the aim of this work is to test the VaR accuracy when is employed in contexts of volatility, for which we compare the VaR outcomes in scenarios of both stability and uncertainty, using the parametric method and a historical simulation based on data generated with the Black & Scholes model. VaR main objective is the prediction of the highest expected loss for any given portfolio, but even when it is considered a useful tool for risk management under conditions of markets stability, we found that it is substantially inaccurate in contexts of crisis or high uncertainty. In addition, we found that the Black & Scholes simulations lead to underestimate the expected losses, in comparison with the parametric method and we also found that those disparities increase substantially in times of crisis. In the first section of this work we present a brief context of risk management in finance. In section II we present the existent literature relative to the VaR concept, its methods and applications. In section III we describe the methodology and assumptions used in this work. Section IV is dedicated to expose the findings. And finally, in Section V we present our conclusions.

  7. [Diversity and community structure of endophytic fungi from Taxus chinensis var. mairei].

    Science.gov (United States)

    2014-07-01

    A total of 628 endophytic fungi were isolated from 480 tissue segments of needles and branches of Taxus chinensis var. mairei. According to morphological characteristics and ITS sequences, they represented 43 taxa in 28 genera, of which 10 Hyphomycetes, 20 Coelomycetes, 12 Ascomycetes and 1 unknown fungus. Phomopsis mali was confirmed as the dominant species. In accordance with relative frequency, Alternaria alternata, Aureobasidium pullulans, Colletotrichum boninense, C. gloeosporioides, Epicoccum nigrum , Fungal sp., Fusarium lateritium, Glomerella cingulata, Magnaporthales sp. , Nigrospora oryzae, Pestalotiopsis maculiformans, P. microspora, Peyronellaea glomerata and Xylaria sp. 1 were more common in T. chinensis var. mairei. T. chinensis var. mairei were severely infected by endophytic fungi. Endophytic fungi were found in 81 percent of plant tissues with a high diversity. Distribution ranges of endophytic fungi were influenced by tissue properties. The colonization rate, richness, diversity of endophytic fungi in needles were obviously lower than in branches, and kinds of endophytic fungi between branches were more similar than those in needles, thus endophytic fungi had tissue preference. In addition, tissue age influenced the community structure of endophytic fungi. The elder branch tissues were, the higher colonization rate, richness, diversity of endophytic fungi were. Systematic studying the diversity and community structure of endophytic fungi in T. chinensis var. mairei and clarifying their distribution regularity in plant tissues would offer basic data and scientific basis for their development and utilization. Discussing the presence of fungal pathogens in healthy plant tissues would be of positive significance for source protection of T. chinensis var. mairei.

  8. VAR Portfolio Optimal: Perbandingan Antara Metode Markowitz dan Mean Absolute Deviation

    Directory of Open Access Journals (Sweden)

    R. Agus Sartono

    2009-05-01

    Full Text Available Portfolio selection method which have been introduced by Harry Markowitz (1952 used variance or deviation standard as a measure of risk. Kanno and Yamazaki (1991 introduced another method and used mean absolute deviation as a measure of risk instead of variance. The Value-at Risk (VaR is a relatively new method to capitalized risk that been used by financial institutions. The aim of this research is compare between mean variance and mean absolute deviation of two portfolios. Next, we attempt to assess the VaR of two portfolios using delta normal method and historical simulation. We use the secondary data from the Jakarta Stock Exchange – LQ45 during 2003. We find that there is a weak-positive correlation between deviation standard and return in both portfolios. The VaR nolmal delta based on mean absolute deviation method eventually is higher than the VaR normal delta based on mean variance method. However, based on the historical simulation the VaR of two methods is statistically insignificant. Thus, the deviation standard is sufficient measures of portfolio risk.Keywords: optimalisasi portofolio, mean-variance, mean-absolute deviation, value-at-risk, metode delta normal, metode simulasi historis

  9. CD36 selection of 3D7 Plasmodium falciparum associated with severe childhood malaria results in reduced VAR4 expression

    Directory of Open Access Journals (Sweden)

    Hviid Lars

    2008-10-01

    Full Text Available Abstract Background A subset of the Plasmodium falciparum erythrocyte membrane protein 1 (PfEMP1SM is involved in the cytoadherence of P. falciparum-infected red blood cells (iRBC contributing to the pathogenesis of severe disease among young children in malaria endemic areas. The PfEMP1SM are encoded by group A var genes that are composed of a more constrained range of amino acid sequences than groups B and C var genes encoding PfEMP1UM associated with uncomplicated malaria. Also, unlike var genes from groups B and C, those from group A do not have sequences consistent with CD36 binding – a major cytoadhesion phenotype of P. falciparum isolates. Methods A 3D7 PfEMP1SM sub-line (3D7SM expressing VAR4 (PFD1235w/MAL8P1.207 was selected for binding to CD36. The protein expression of this parasite line was monitored by surface staining of iRBC using VAR4-specific antibodies. The serological phenotype of the 3D7SM parasites was determined by flow cytometry using malaria semi-immune and immune plasma and transcription of the 59 var genes in 3D7 were analysed by real-time quantitative reverse transcriptase-polymerase chain reaction (RT-PCR using var-specific primers. Results A selection-induced increased adhesion of 3D7SM iRBC to CD36 resulted in a reduced var4 transcription and VAR4 surface expression. Conclusion VAR4 is not involved in CD36 adhesion. The current findings are consistent with the notion that CD36 adhesion is not associated with particular virulent parasite phenotypes, such as those believed to be exhibited by VAR4 expressing parasites.

  10. Fatal encephalitis caused by Dactylaria constricta var. gallopava in a snowy owl chick (Nyctea scandiaca).

    Science.gov (United States)

    Salkin, I F; Dixon, D M; Kemna, M E; Danneman, P J; Griffith, J W

    1990-12-01

    Dactylaria constricta var. gallopava (Cooke) Salkin et Dixon was found to cause fatal encephalitis in a 28-day-old, captivity-bred snowy owl chick (Nyctea scandiaca). The previously healthy bird suddenly developed ataxia, severe torticollis, and extensor rigidity of the legs. Since the animal did not improve with antibiotic or vitamin-mineral supplement therapy, the chick was euthanized 5 days after the onset of neurologic signs. At necropsy, all tissues except the brain were grossly normal. Cultures inoculated with blood from the brain and heart yielded a dematiaceous mould that subsequently proved to be D. constricta var. gallopava. This is the first report of natural central nervous system infection caused by D. constricta var. gallopava in a snowy owl.

  11. Oil Price Fluctuations and Output performance in Nigeria : a Var Approach

    Directory of Open Access Journals (Sweden)

    Ismail O. Fasanya

    2013-09-01

    Full Text Available This paper examines the impact of oil price movements on real output growth in Nigeria during the period 1970 to 2011 making use of annual time series data. The empirical analysis rests on dynamic VAR analytical framework. To capture the possible channels reflecting the fluctuations in the oil prices, the model includes money supply, real exchange rate, government spending and inflation. Our findings indicate the lagged effects of the VAR model are not able to capture any significant impact of changes in oil prices, and oil price shocks are therefore not found to contribute directly to output, exchange rate or inflation in the short run but show a positive significant relationship to output growth in the long run. Following the VAR model results, the generalized impulse responses reaffirm the direct link between the net oil price shock and growth, as well as the indirect linkages.

  12. Evaluation of Requirements for Volt/Var Control and Optimization Function in Distribution Management Systems

    DEFF Research Database (Denmark)

    Rahimi, Saaed; Marinelli, Mattia; Silvestro, Federico

    2012-01-01

    To meet the requirement from new visions within “smart grid” and to provide solutions for many challenges that DSOs (Distribution System Operators) are facing today, we need to develop advanced DMS (Distribution Management System) applications. A centralized Volt/Var Control (VVC) is one of the m......To meet the requirement from new visions within “smart grid” and to provide solutions for many challenges that DSOs (Distribution System Operators) are facing today, we need to develop advanced DMS (Distribution Management System) applications. A centralized Volt/Var Control (VVC) is one...... of the most desirable and important functions within Distribution Automation systems and DMSs. The overall Volt/Var control function is concerned with maintaining system voltage profile within a desired range and minimizing system losses by controlling the reactive power flow. The main objective of this paper...

  13. INDUCING RESISTANCE IN COTTON AGAINST COLLETOTRICHUM GOSSYPII VAR. CEPHALOSPORIOIDES WITH ESSENTIAL OILS

    Directory of Open Access Journals (Sweden)

    B. T. Santos

    2016-11-01

    Full Text Available This study aimed to evaluate the potential of essential oils of rosemary (Rosmarinus officinalis, baccharis (Baccharis trimera, lemon grass (Cymbopogon citratus, basil (Ocimum basilicum and eucalyptus (Corymbia citriodora in inducing resistance in cotton plants against C. gossypii var. cephalosporioides. The inductive effect of the essential oils was evaluated in plants growing in pots in the environment, which were treated with 1% essential oil at 47 days of age. 24 hours after elicitor treatment the plants were inoculated with a suspension of 1.5 x 105 conidia mL-1 of C. gossypii var. cephalosporioides. Five evaluations were performed disease and calculated the area under the disease progress curve. All essential oils showed potential for inducing resistance against cotton C. gossypii var. cephalosporioides.

  14. RBF neural network prediction on weak electrical signals in Aloe vera var. chinensis

    Science.gov (United States)

    Wang, Lanzhou; Zhao, Jiayin; Wang, Miao

    2008-10-01

    A Gaussian radial base function (RBF) neural network forecast on signals in the Aloe vera var. chinensis by the wavelet soft-threshold denoised as the time series and using the delayed input window chosen at 50, is set up to forecast backward. There was the maximum amplitude at 310.45μV, minimum -75.15μV, average value -2.69μV and Aloe vera var. chinensis respectively. The electrical signal in Aloe vera var. chinensis is a sort of weak, unstable and low frequency signals. A result showed that it is feasible to forecast plant electrical signals for the timing by the RBF. The forecast data can be used as the preferences for the intelligent autocontrol system based on the adaptive characteristic of plants to achieve the energy saving on the agricultural production in the plastic lookum or greenhouse.

  15. [Effect of different plant growth regulators on yield and quality of Angelica dahurica var. formosana development].

    Science.gov (United States)

    Hou, Kai; Chen, Jun-Wen; Zhai, Juan-Yuan; Shen, Hao; Chen, Li; Wu, Wei

    2013-07-01

    To investigate the effect of plant growth regulators on the growth and quality of Angelica dahurica var. formosana. Five plant growth regulators: chlormequat chloride (CCC), Mepiquat chloride (PIX), Gibberellic acid (GA3), Paclobutrazol (PP333) and Maleic Hydrazide (MH) were sprayed in rosette stage, the effects of these plant growth regulators (PGRs) on the growth, yield and quality of A. dahurica var. formosanaw were observed. The biological traits were first measured and then imperatorin and isoimperatorin contents in roots were determined by HPLC. Low concentration GA3 increased the yield while not influenced the premature bolting rate and the coumarin content. Spraying of GA3 (30 mg x L(-1)) could guarantee the growth and development of A. dahurica var. formosana to have a higher yield and maintain the active ingredients content in the root as well.

  16. [Microscopic identification of tibetan medicinal herb "Songdi" (Saxifraga umbellulata var pectinata)].

    Science.gov (United States)

    Fei, Yao; Zhong, Guo-Yue; Liu, Xiang; Wang, Gang; Zhang, Zhi-Wei; Zhao, Ji-Feng

    2013-03-01

    To establish a method of microscopic identification of Tibetan medicinal herb " Songdi" (Saxifraga umbellulata var. pectinata). The different characteristics and microscopic identification of 4 species of Songdi were compared, including the main variety (Saxifraga umbellulata var. pectinata ) and approximate varieties (S. unguiculata, S. przewalskii and S. tanguTi,) were studied and compared. The botanical anatomy characteristics of Saxifraga umbellulata var. pectinata (including roots, stems, leaves, flowers, stalks and fruits) have been measured. The methods for powder identifications and transverse section of stems root and leaves of four species of Songdi were established. Four species of Songdi can be identified by the growth pattern of basal leaves, type of hair, type of inflorescence, number of flowers, proportion of tissue structures in stem, form of pollen grains.

  17. Tamarix arborea var. arborea and Tamarix parviflora: Two species valued for their adaptability to stress conditions.

    Science.gov (United States)

    Grisafi, Francesca; Oddo, Elisabetta; Gargano, Maria Letizia; Inzerillo, Simone; Russo, Gianni; Venturella, Giuseppe

    2016-03-01

    The choice of stress resistant and highly adaptable species is a fundamental step for landscaping and ornamental purposes in arid and coastal environments such as those in the Mediterranean basin. The genus Tamarix L. includes about 90 species with a high endurance of adversity. We investigated the water relations and photosynthetic response of Tamarix arborea (Sieb. ex Ehrenb.) Bge. var. arborea and T. parviflora DC. growing in an urban environment. Both species showed no evidence of drought or salt stress in summer, and appeared to follow two strategies with T. arborea var. arborea investing in high carbon gain at the beginning of the summer, and then reducing photosynthetic activity at the end of the season, and T. parviflora showing lower but constant levels of photosynthetic activity throughout the vegetative season. For landscaping and ornamental purposes, we suggest T. arborea var. arborea when a fast-growing, high-cover species is necessary, and T. parviflora when less-invasive species are required.

  18. The mechanical properties of Acer velutinum var. glabrescens wood growing in different regions of Caspian forests

    Directory of Open Access Journals (Sweden)

    fardad golbabaei

    2016-06-01

    Full Text Available The major engineering properties of Acer velutinum var. glabrescens wood growing in different regions of Caspian forests (North of Iran was determined. Test materials were selected randomly from Acer velutinum var. glabrescens tree plantation and the test specimens were prepared according to ASTM D-143 standard. Mechanical and physical properties were measured on both green and air-dried samples (12% moisture content. The results of the measurement were statistically analyzed based on randomized block design and factorial experiment. The influence of specimen locations at different stem heights was examined. Based on the results of this study, Significant areas of habitat in the area, Maple Vysr Mazandaran species most resistant of the Maple Sangdeh Frame has the lowest resistance. Keywords: Maple, statice bending, compression parallel to grain, compression perpendicular to grain, tension perpendicular to grain, Acer velutinum var. glabrescens.

  19. Characterization of natural hybrids of Saccharomyces cerevisiae and Saccharomyces bayanus var. uvarum.

    Science.gov (United States)

    Le Jeune, Christine; Lollier, Marc; Demuyter, Catherine; Erny, Claude; Legras, Jean-Luc; Aigle, Michel; Masneuf-Pomarède, Isabelle

    2007-06-01

    Nine yeast strains were isolated from spontaneous fermentations in the Alsace area of France, during the 1997, 1998 and 1999 grape harvests. Strains were characterized by pulsed-field gel electrophoresis, PCR-restriction fragment length polymorphism (RFLP) of the MET2 gene, delta-PCR, and microsatellite patterns. Karyotypes and MET2 fragments of the nine strains corresponded to mixed chromosomal bands and restriction patterns for both Saccharomyces cerevisiae and Saccharomyces bayanus var. uvarum. They also responded positively to amplification with microsatellite primers specific to both species and were demonstrated to be diploid. However, meiosis led to absolute nonviability of their spores on complete medium. All the results demonstrated that the nine yeast strains isolated were S. cerevisiaexS. bayanus var. uvarum diploid hybrids. Moreover, microsatellite DNA analysis identified strains isolated in the same cellar as potential parents belonging to S. bayanus var. uvarum and S. cerevisiae.

  20. Genetic diversity study of the yeast Saccharomyces bayanus var. uvarum reveals introgressed subtelomeric Saccharomyces cerevisiae genes.

    Science.gov (United States)

    Naumova, Elena S; Naumov, Gennadi I; Michailova, Yulia V; Martynenko, Nikolay N; Masneuf-Pomarède, Isabelle

    2011-01-01

    Intraspecies polymorphism of the yeast Saccharomyces bayanus var. uvarum was studied using the polymerase chain reaction with a microsatellite primer (GTG)(5). Sixty-nine strains of different origins were analyzed. There existed a correlation between PCR patterns of the strains and the source of their isolation: the type of wine and the particular winemaking region. Southern hybridization analysis revealed for the first time introgression between Saccharomyces cerevisiae and S. bayanus var. uvarum. Two strains isolated from alcoholic beverages in Hungary and identified by genetic analysis as S. bayanus var. uvarum were found to harbor a number of S. cerevisiae subtelomeric sequences: Y', SUC, RTM and MAL. Copyright © 2010 Institut Pasteur. Published by Elsevier SAS. All rights reserved.

  1. Genetic variability and population structure of the mushroom Pleurotus eryngii var. tuoliensis.

    Directory of Open Access Journals (Sweden)

    Mengran Zhao

    Full Text Available The genetic diversity of 123 wild strains of Pleurotus eryngii var. tuoliensis, which were collected from nine geographical locations in Yumin, Tuoli, and Qinghe counties in the Xinjiang Autonomous Region of China, was analysed using two molecular marker systems (inter-simple sequence repeat and start codon targeted. At the variety level, the percentage of polymorphic loci and Nei's gene diversity index for P. eryngii var. tuoliensis was 96.32% and 0.238, respectively. At the population level, Nei's gene diversity index ranged from 0.149 to 0.218 with an average of 0.186, and Shannon's information index ranged from 0.213 to 0.339 with an average of 0.284. These results revealed the abundant genetic variability in the wild resources of P. eryngii var. tuoliensis. Nei's gene diversity analysis indicated that the genetic variance was mainly found within individual geographical populations, and the analysis of molecular variance revealed low but significant genetic differentiation among local and regional populations. The limited gene flow (Nm = 1.794 was inferred as a major reason for the extent of genetic differentiation of P. eryngii var. tuoliensis. The results of Mantel tests showed that the genetic distance among geographical populations of P. eryngii var. tuoliensis was positively correlated with the geographical distance and the longitudinal distances (rGo = 0.789 and rLn = 0.873, respectively, which indicates that geographical isolation is an important factor for the observed genetic differentiation. Nine geographical populations of P. eryngii var. tuoliensis were divided into three groups according to their geographical origins, which revealed that the genetic diversity was closely related to the geographical distribution of this wild fungus.

  2. Potential for wind extraction from 4D-Var assimilation of aerosols and moisture

    Science.gov (United States)

    Zaplotnik, Žiga; Žagar, Nedjeljka

    2017-04-01

    We discuss the potential of the four-dimensional variational data assimilation (4D-Var) to retrieve the unobserved wind field from observations of atmospheric tracers and the mass field through internal model dynamics and the multivariate relationships in the background-error term for 4D-Var. The presence of non-linear moist dynamics makes the wind retrieval from tracers very difficult. On the other hand, it has been shown that moisture observations strongly influence both tropical and mid-latitude wind field in 4D-Var. We present an intermediate complexity model that describes nonlinear interactions between the wind, temperature, aerosols and moisture including their sinks and sources in the framework of the so-called first baroclinic mode atmosphere envisaged by A. Gill. Aerosol physical processes, which are included in the model, are the non-linear advection, diffusion and sources and sinks that exist as dry and wet deposition and diffusion. Precipitation is parametrized according to the Betts-Miller scheme. The control vector for 4D-Var includes aerosols, moisture and the three dynamical variables. The former is analysed univariately whereas wind field and mass field are analysed in a multivariate fashion taking into account quasi-geostrophic and unbalanced dynamics. The OSSE type of studies are performed for the tropical region to assess the ability of 4D-Var to extract wind-field information from the time series of observations of tracers as a function of the flow nonlinearity, the observations density and the length of the assimilation window (12 hours and 24 hours), in dry and moist environment. Results show that the 4D-Var assimilation of aerosols and temperature data is beneficial for the wind analysis with analysis errors strongly dependent on the moist processes and reliable background-error covariances.

  3. Quantitative determination of alpha-tocopherol in Pistacia lentiscus, Pistacia lentiscus var. chia, and Pistacia terebinthus by TLC-densitometry and colorimetry.

    Science.gov (United States)

    Kivçak, B; Akay, S

    2005-01-01

    A quantitative determination of alpha-tocopherol in Pistacia lentiscus, Pistacia lentiscus var. chia, and Pistacia terebinthus, leaves was established by TLC-densitometry and colorimetry. The highest amount of alpha-tocopherol was found in P. lentiscus var. chia.

  4. Baculovirus-expressed constructs induce immunoglobulin G that recognizes VAR2CSA on Plasmodium falciparum-infected erythrocytes

    DEFF Research Database (Denmark)

    Barfod, Lea; Nielsen, Morten A; Turner, Louise

    2006-01-01

    of infected erythrocytes. Our data show that five of the six VAR2CSA Duffy-binding-like domains are surface exposed and that induction of surface-reactive VAR2CSA-specific IgG depends critically upon antigen conformation. These findings have implications for the development of vaccines against pregnancy...

  5. Growth-Inhibitory and Apoptosis-Inducing Effects of Punica granatum L. var. spinosa (Apple Punice) on Fibrosarcoma Cell Lines

    OpenAIRE

    Sineh Sepehr, Koushan; Baradaran, Behzad; Mazandarani, Masoumeh; Yousefi, Bahman; Abdollahpour Alitappeh, Meghdad; Khori, Vahid

    2014-01-01

    Purpose: Punica granatum L. var. granatum (Pomegranate), an herbaceous plant found in Iran, The aim of this study was to investigate the cytotoxic effects, induction of apoptosis, and the mechanism of cell death of ethanol extract from Punica granatum L. var. spinosa on the mouse fibrosarcoma cell line, WEHI-164.

  6. 40 CFR 180.1243 - Bacillus subtilis var. amyloliquefaciens strain FZB24; exemption from the requirement of a...

    Science.gov (United States)

    2010-07-01

    ... 40 Protection of Environment 23 2010-07-01 2010-07-01 false Bacillus subtilis var... EXEMPTIONS FOR PESTICIDE CHEMICAL RESIDUES IN FOOD Exemptions From Tolerances § 180.1243 Bacillus subtilis... the requirement of a tolerance for residues of the Bacillus subtilis var. amyloliquefaciens strain...

  7. Influence of intermittent preventive treatment on antibodies to VAR2CSA in pregnant Cameroonian women

    DEFF Research Database (Denmark)

    Babakhanyan, Anna; Tutterrow, Yeung L; Bobbili, Naveen

    2016-01-01

    Intermittent preventive treatment (IPT) and insecticide-treated bed nets are the standard of care for preventing malaria in pregnant women. Since these preventive measures reduce exposure to malaria, their influence on the antibody (Ab) response to the parasite antigen VAR2CSA was evaluated...... in pregnant Cameroonian women exposed to holoendemic malaria. Ab levels to full-length VAR2CSA (FV2), variants of the six Duffy binding like (DBL) domains, and proportion of high avidity Ab to FV2 were measured longitudinally in 92 women before and 147 women after IPT. As predicted, reduced exposure...

  8. Transient Stability Enhancement in Power System Using Static VAR Compensator (SVC

    Directory of Open Access Journals (Sweden)

    Youssef MOULOUDI

    2012-12-01

    Full Text Available In this paper, an indirect adaptive fuzzy excitation and static VAR (unit of reactive power, volt-ampere reactive compensator (SVC controller is proposed to enhance transient stability for the power system, which based on input-output linearization technique. A three-bus system, which contains a generator and static VAR compensator (SVC, is considered in this paper, the SVC is located at the midpoint of the transmission lines. Simulation results show that the proposed controller compared with a controller based on tradition linearization technique can enhance the transient stability of the power system under a large sudden fault, which may occur nearly at the generator bus terminal.

  9. Changes in var gene mRNA levels during erythrocytic development in two phenotypically distinct Plasmodium falciparum parasites

    DEFF Research Database (Denmark)

    Dahlbäck, Madeleine; Lavstsen, Thomas; Salanti, Ali

    2007-01-01

    points along the 48 hours intra-erythrocytic cycle for extraction of RNA and for analysis of expression of variant surface antigens by flow cytometry. Total RNA from each parasite sample was extracted and cDNA synthesized. Quantitative real-time PCR was performed using gene-specific primers for all var...... genes. Samples for flow cytometry were labelled with rabbit IgG targeting DBL5epsilon of VAR2CSA and serum IgG from malaria-exposed men and pregnant women. RESULTS: var transcripts were detected at all time points of the intra-erythrocytic cycle by quantitative real-time PCR, although transcription......BACKGROUND: The var multigene family encodes PfEMP1, which are expressed on the surface of infected erythrocytes and bind to various host endothelial receptors. Antigenic variation of PfEMP1 plays a key role in malaria pathogenesis, a process partially controlled at the level of var gene...

  10. La salud reproductiva del varón amenazada

    Directory of Open Access Journals (Sweden)

    Marieta Fernández

    2014-01-01

    Comentario: El interés mostrado por la comunidad cientifica por esclarecer la realidad de la salud reproductiva en Europa y en otros países occidentales, ha con-ducido a la redacción de una serie de recomendaciones, propuestas por expertes en el campo, que sirvan de orientación para politicas de financiación de la investigación. El debate sobre el deteriora de la salud reproductiva delvarón europeo ha llegado a su fin. Ya nadie duda de que tante los parámetras de medida directa como los indicadores indirectes de la fertilidad masculina manifiestan ese daño. Lo que es realmente novedoso en la propuesta es, de una parte, la vinculación entre el deteriora en salud reproductiva -incluida la caída secular en los niveles de testosterona circulante del varón-y el riesgode enfermedad cardiovascular y diabetes; de otra parte, la presentación formal de una hipótesis etiológica que requiere la investigación de la exposición materno-infantil a contaminantes químicos con actividad hormonal y sugiere una actitud precautoria. Los disruptores endocrinos son componentes de cosméticos, detergentes, medicamentos y alimentes de consumo y uso diario. Mientras sesudos cientificos en toda Europa abordan este asunto tratando de fortalecer la hipótesis, ¿qué corresponde a los sanitarios y responsables de políticas de salud?, lo habituai, informarse e informar. Conocer y trasmitir de forma inteligible recomendaciones en hábites de vida y exposiciones ambien-tales que sirvan para proteger a la población general de un daño que se presume importante. Desafortunadamente las noticias sobre exposición química ambiental llegan más fácilmente a las páginas de ciencia de los diarios nacionales que a las bibliotecas de los sanitarios. El mensaje no parece llegar a los foras adecuados ni en el momente oportuno. Los auto-res del artículo insisten en que el gasto en remedios terapéuticos costosos estaría mejor empleado en orientaciones preventivas. Somos de la opini

  11. Efficient gene replacements in ku70 disruption strain of Aspergillus chevalieri var. intermedius

    Directory of Open Access Journals (Sweden)

    Qingqing Huang

    2017-01-01

    Full Text Available Aspergillus chevalieri var. intermedius is a dominant filamentous fungal species in Fuzhuan tea and is associated with the quality and health benefits of this tea. The sexual or asexual reproduction of this fungus depends on the osmotic pressure of the tea. Efforts to enhance the beneficial effects of A. chevalieri var. intermedius are hampered by difficulties in disrupting its genes. To address this issue, we identified the A. chevalieri var. intermedius homolog (Acku70 of human Ku70 and generated an Acku70 disruption strain (ΔAcku70, aiming to improve the gene replacement efficiency. ΔAcku70 grew at a slightly lower rate in vitro than the wild-type strain; however, the two strains exhibited similar sensitivity to temperature, osmotic pressure and the effects of ethyl methane sulphonate and H2O2. The replacement efficiency of veA and flbA dramatically increased in ΔAcku70 compared to that in the wild type. The efficiency of flbA replacement increased from 2.6% to 80%, whereas the frequency of veA disruption increased from 15.2% to 83.9% and from 30.8% to 86.8%. Thus, ΔAcku70 is suitable for use as a type strain for large-scale functional genomic analysis of A. chevalieri var. intermedius.

  12. Choosing Expected Shortfall over VaR in Basel III Using Stochastic Dominance

    NARCIS (Netherlands)

    C-L. Chang (Chia-Lin); J.A. Jiménez-Martín (Juan-Ángel); E. Maasoumi (Esfandiar); M.J. McAleer (Michael)

    2015-01-01

    textabstractBank risk managers follow the Basel Committee on Banking Supervision (BCBS) recommendations that recently proposed shifting the quantitative risk metrics system from Value-at-Risk (VaR) to Expected Shortfall (ES). The Basel Committee on Banking Supervision (2013, p. 3) noted that: “a

  13. PHOSPHATE NUTRITION EFFECTS ON ALUMINUM AVOIDANCE OF MUCUNA-PRURIENS VAR UTILIS

    NARCIS (Netherlands)

    HAIRIAH, K; VANNOORDWIJK, M; STULEN, [No Value; MEIJBOOM, FW; KUIPER, PJC

    The response of roots of Mucuna pruriens var. utilis to aluminium depends on the duration of exposure and the type of experiment. In a short-term study, the usual reduction of root elongation rate by Al was found. In contrast, a study for a longer period of time, 4 weeks, showed a stimulation of

  14. The correct name for Archidendron clypearia (Jack) Nielsen var. casai (Blanco) Nielsen (Leguminosae-Mimosoideae)

    NARCIS (Netherlands)

    Veldkamp, J.F.

    1997-01-01

    Recently Gangopadhyay & Chakrabarty (1993, 1994) proposed the combination Archidendron clypearia (Jack) Nielsen var. montanum (Benth.) Gang. & T. Chakrab. When I compared this to some papers Nielsen wrote (1984 (et al.); 1992) it would seem that this new combination would be identical with A.

  15. Growth and N2 fixation in an Alnus hirsuta (Turcz.) var. sibirica stand ...

    Indian Academy of Sciences (India)

    To estimate the N2 fixation ability of the alder (Alnus hirsuta (Turcz.) var. sibirica), we examined the seasonal variation in nitrogenase activity of nodules using the acetylene reduction method in an 18-year-old stand naturally regenerated after disturbance by road construction in Japan. To evaluate the contribution of N2 ...

  16. Structural Insight into Epitopes in the Pregnancy-Associated Malaria Protein VAR2CSA

    DEFF Research Database (Denmark)

    Andersen, P; Nielsen, MA; Resende, M

    2008-01-01

    Pregnancy-associated malaria is caused by Plasmodium falciparum malaria parasites binding specifically to chondroitin sulfate A in the placenta. This sequestration of parasites is a major cause of low birth weight in infants and anemia in the mothers. VAR2CSA, a polymorphic multi-domain protein...

  17. Comparison of historically simulated VaR: Evidence from oil prices

    Energy Technology Data Exchange (ETDEWEB)

    Costello, Alexandra [Seminole Canada Energy, Calgary, AB (Canada); Asem, Ebenezer; Gardner, Eldon [Faculty of Management, University of Lethbridge, Lethbridge, AB (Canada)

    2008-09-15

    Cabedo and Moya [Cabedo, J.D., Moya, I., 2003. Estimating oil price 'Value at Risk' using the historical simulation approach. Energy Economics 25, 239-253] find that ARMA with historical simulation delivers VaR forecasts that are superior to those from GARCH. We compare the ARMA with historical simulation to the semi-parametric GARCH model proposed by Barone-Adesi et al. [Barone-Adesi, G., Giannopoulos, K., Vosper, L., 1999. VaR without correlations for portfolios of derivative securities. Journal of Futures Markets 19 (5), 583-602]. The results suggest that the semi-parametric GARCH model generates VaR forecasts that are superior to the VaR forecasts from the ARMA with historical simulation. This is due to the fact that GARCH captures volatility clustering. Our findings suggest that Cabedo and Moya's conclusion is mainly driven by the normal distributional assumption imposed on the future risk structure in the GARCH model. (author)

  18. The flexural properties of young Pinus elliottii × Pinus caribaea var ...

    African Journals Online (AJOL)

    The objectives of this study were to determine the bending strength and stiffness properties of young Pinus elliottii × P. caribaea var. hondurensis timber from the Southern Cape, South Africa, and to evaluate the predictability of these properties from acoustic measurements on standing trees, logs and their sawn boards.

  19. Improved Likelihood Ratio Tests for Cointegration Rank in the VAR Model

    DEFF Research Database (Denmark)

    Boswijk, H. Peter; Jansson, Michael; Nielsen, Morten Ørregaard

    We suggest improved tests for cointegration rank in the vector autoregressive (VAR) model and develop asymptotic distribution theory and local power results. The tests are (quasi-)likelihood ratio tests based on a Gaussian likelihood, but of course the asymptotic results apply more generally...

  20. Aislamiento de poligodial de la corteza de drymis granadensis, var. grandiflora

    Directory of Open Access Journals (Sweden)

    Jairo Calle

    2009-07-01

    Full Text Available Del extracto de éter de petróleo (P Eb = 40-60 "O de la corteza de Drymis granadensis, var. grandiflora, se aisló con 8% de rendimiento, poligodial ( I , un sesquiterpeno conocido, cuya estructura se confirmó por métodos espectroscópicos.

  1. 40 CFR 80.170 - Volumetric additive reconciliation (VAR), equipment calibration, and recordkeeping requirements.

    Science.gov (United States)

    2010-07-01

    ... applicable. (i) For a facility which uses in-line meters to measure detergent usage, the total volume of... the hardware and software necessary to review the records. (2) Electronically-generated VAR formula...; (3) For all detergent blending facilities, product transfer documents for all gasoline, detergent and...

  2. High avidity antibodies to full-length VAR2CSA correlate with absence of placental malaria

    DEFF Research Database (Denmark)

    Tutterrow, Yeung Lo; Salanti, Ali; Avril, Marion

    2012-01-01

    VAR2CSA mediates sequestration of Plasmodium falciparum-infected erythrocytes in the placenta, increasing the risk of poor pregnancy outcomes. Naturally acquired antibodies (Ab) to placental parasites at delivery have been associated with improved pregnancy outcomes, but Ab levels and how early i...

  3. Growt var. h, phy Punch ysiolog h as af gy and ffected hy flower d by ...

    African Journals Online (AJOL)

    SAM

    maleic hydrazide on growth, physiology and flowering of spray chrysanthemum var. Punch grown under greenhouse conditions. The research findings are based on the key parameters necessary for regulating the growth of chrysanthemum under protected conditions and hoped to be valuable information for flower growers ...

  4. Ulubelenolide: A New triterpene lactone from Tanacetum chiliophyllum (Fisch. & Mey. var. monocephalum Grierson

    Directory of Open Access Journals (Sweden)

    Kaan Polatoğlu

    2015-04-01

    Full Text Available A further investigation on Tanacetum chilliophyllum var. monocephalum ethyl acetate extract afforded a new triterpene lactone Ulubelenolide (olean-12-ene-3β,10β-olide (1.The structure of (1 was determined with spectral analysis including FTIR, 1H, 13C NMR, APT, DEPT, COSY, HMQC, HMBC, and APCI-MS.

  5. Development of a molecular test to ensure good flowering of Viburnum Opulus Var. Roseum

    NARCIS (Netherlands)

    Kromwijk, J.A.M.; Noort, van F.R.; Verhoef, N.; Balk, P.; Wordragen, van M.F.

    2013-01-01

    During wintertime Viburnum opulus var. roseum (snowball) shrubs are forced in warm greenhouses to harvest early cut flowers. Early forcing is occasionally unsuccessful. This is probably due to a lack of hours with low temperatures that is needed to break bud dormancy. To gain more insight about the

  6. Anatomical element localization by EDXS in Grevillea exul var. exul under nickel stress

    Energy Technology Data Exchange (ETDEWEB)

    Rabier, J. [Equipe Biomarqueurs et Bioindicateurs Environnementaux, Institut Mediterraneen d' Ecologie et de Paleoecologie, UMR CNRS 6116, Universite de Provence, Case 17, 3 Place Victor Hugo, 13331 Marseille Cedex 3 (France)], E-mail: Jacques.Rabier@univ-provence.fr; Laffont-Schwob, I. [Equipe Biomarqueurs et Bioindicateurs Environnementaux, Institut Mediterraneen d' Ecologie et de Paleoecologie, UMR CNRS 6116, Universite de Provence, Case 17, 3 Place Victor Hugo, 13331 Marseille Cedex 3 (France)], E-mail: Isabelle.Schwob@univ-provence.fr; Notonier, R. [Service commun de microscopie electronique, Universite de Provence, Case 76, 3 Place Victor Hugo, 13331 Marseille Cedex 3 (France)], E-mail: Roger.Notonier@univ-provence.fr; Fogliani, B. [MABioM, Universite de la Nouvelle-Caledonie, BP R4, 98847 Noumea, New Caledonia (France)], E-mail: bfoglian@univ-nc.nc; Bouraima-Madjebi, S. [MABioM, Universite de la Nouvelle-Caledonie, BP R4, 98847 Noumea, New Caledonia (France)], E-mail: bouraima@univ-nc.nc

    2008-12-15

    Grevillea exul var. exul, an endemic serpentinic Proteaceae of New Caledonia, was chosen to study the spatial distribution of Ni because this species supports strong content of metals, which can allow important absorptions thus detectable by microanalysis. Fine transversal sections of axenic G. exul var. exul plants grown during 15 days on nickel sulphate medium were examined by EDXS microanalysis. It showed that in Ni treated plants, Ni was concentrated mostly in the phloem compared to the xylem and the epidermis, either in roots or in the basal part of the stems and was mostly in the epidermis in the upper part of the stems and not detectable in the leaves. This metal took the place of P and K in the treated plants whereas the localization of these macroelements was quite uniform in control sections. We assume that a mechanism of phloem loading is implicated to restrict Ni accumulation in G. exul var. exul. - Ni resistance mechanism in Grevillea exul var. exul plants depends on a basipetal export mechanism.

  7. Stomatogenesis in Gleichenia gigantea, Dicranopteris linearis var. montana and D. splendida (Gleicheniaceae)

    NARCIS (Netherlands)

    Sen, U.; Bhunia, S.

    1984-01-01

    This is the first ever study of the development of stomata in Gleichenia gigantea Wallich ex Hook. (subg. Diplopterygium), Dicranopteris linearis (Burm. f.) Underw. var. montana Holttum and D. splendida (Hand.-Mazz.) Tagawa in detail. In these ferns, as in many polypodioid members, the polocytic

  8. Anti-aging activities of Pyrus pyrifolia var culta plant callus extract

    African Journals Online (AJOL)

    source of anti-aging cosmetic components with skin lightening and regenerating activities. Keywords: P. pyrifolia var. culta, Anti-aging, Callus extract, Skin lightening, Anti-tyrosinase activity,. Melanogenesis, Wound recovery, Procollagen .... the percentage antioxidant activity was calculated using the following equation: %.

  9. Evidence that the human pathogenic fungus Cryptococcus neoformans var. grubii may have evolved in Africa.

    Directory of Open Access Journals (Sweden)

    Anastasia P Litvintseva

    2011-05-01

    Full Text Available Most of the species of fungi that cause disease in mammals, including Cryptococcus neoformans var. grubii (serotype A, are exogenous and non-contagious. Cryptococcus neoformans var. grubii is associated worldwide with avian and arboreal habitats. This airborne, opportunistic pathogen is profoundly neurotropic and the leading cause of fungal meningitis. Patients with HIV/AIDS have been ravaged by cryptococcosis--an estimated one million new cases occur each year, and mortality approaches 50%. Using phylogenetic and population genetic analyses, we present evidence that C. neoformans var. grubii may have evolved from a diverse population in southern Africa. Our ecological studies support the hypothesis that a few of these strains acquired a new environmental reservoir, the excreta of feral pigeons (Columba livia, and were globally dispersed by the migration of birds and humans. This investigation also discovered a novel arboreal reservoir for highly diverse strains of C. neoformans var. grubii that are restricted to southern Africa, the mopane tree (Colophospermum mopane. This finding may have significant public health implications because these primal strains have optimal potential for evolution and because mopane trees contribute to the local economy as a source of timber, folkloric remedies and the edible mopane worm.

  10. Stability Analysis of a Three-Phase Solid-State Var Compensator ...

    African Journals Online (AJOL)

    The principal component of this device is a three-phase pulse-width-modulated voltage source inverter. A mathematical model of the inverter is derived in d-q referenceframe and then used to examine the stability of the compensator in response to variations in circuit parameters. Keywords: var compensation, inverter, ...

  11. Isoprene derivatives from the leaves and callus cultures of Vaccinium corymbosum var. bluecrop.

    Science.gov (United States)

    Migas, Piotr; Cisowski, Wojciech; Dembińska-Migas, Wanda

    2005-01-01

    The phytochemical analysis of Vaccinium corymbosum var bluecrop leaves and callus biomass revealed ursolic acid, oleanolic acid, alpha-amyrin and beta-amyrin in both plant materials. Beta-sitosterol was determined only in callus biomass. The structure of isolated compounds was elucidated by TLC co-chromatography with standards and with spectroscopic methods (1H NMR, 13C NMR, EI-MS).

  12. Bolívar ante la política de Cartagena en 1812

    Directory of Open Access Journals (Sweden)

    Manuel José Forero

    1961-11-01

    Full Text Available Veintinueve años contaba Simón Bolívar en los días de su llegada a Cartagena. Imaginación ardiente, ojos vivos, ademanes colmados de actividad eran los dones visibles al instante en el futuro Libertador. Traía en el alma un gran dolor.

  13. THE STEERING TOOL OF FINANCIAL INSTITUTIONS: CREDIT VAR (VALUE AT RISK

    Directory of Open Access Journals (Sweden)

    BĂRBULESCU MARINELA

    2015-04-01

    Full Text Available In order to determine the economic capital, in terms of internal management or of application of regulations, financial institutions need to model the probability of future losses on a loan portfolio. This is generally made applying the Credit VaR method. Thus, unexpected losses can be assessed.

  14. Yunis-Varón syndrome caused by biallelic VAC14 mutations

    NARCIS (Netherlands)

    Lines, Matthew A.; Ito, Yoko; Kernohan, Kristin D.; Mears, Wendy; Hurteau-Miller, Julie; Venkateswaran, Sunita; Ward, Leanne; Khatchadourian, Karine; McClintock, Jeff; Bhola, Priya; Campeau, Philippe M.; Boycott, Kym M.; Michaud, Jean; van Kuilenburg, André Bp; Ferdinandusse, Sacha; Dyment, David A.

    2017-01-01

    Yunis-Varón syndrome (YVS) is an autosomal recessive disorder comprising skeletal anomalies, dysmorphism, global developmental delay and intracytoplasmic vacuolation in brain and other tissues. All hitherto-reported pathogenic variants affect FIG4, a lipid phosphatase involved in

  15. Impact of different drying trajectories on degradation of nutritional compounds in broccoli (Brassica oleracea var. italica)

    NARCIS (Netherlands)

    Jin, X.; Oliviero, T.; Sman, van der R.G.M.; Verkerk, R.; Dekker, M.; Boxtel, van A.J.B.

    2014-01-01

    This work concerns the degradation of the nutritional compounds glucoraphanin (GR) and vitamin C (Vc), and the inactivation of the enzyme myrosinase (MYR) in broccoli (Brassica oleracea var. italica) during drying with air temperatures in the range of 30e60 C. Dynamic optimization is applied to find

  16. Disseminated Nosocomial Fungal Infection by Aureobasidium pullulans var. melanigenum: a Case Report

    OpenAIRE

    Bolignano, Giuseppe; Criseo, Giuseppe

    2003-01-01

    We report on a rare case of disseminated nosocomial fungal infection due to Aureobasidium pullulans var. melanigenum in a severely traumatized patient. Repeated blood and urine cultures yielded multicellular filamentous hyphal structures of varying size accompanied by budding yeast-like-cells of ellipsoidal morphology. The patient became asymptomatic after fluconazole therapy.

  17. Disseminated nosocomial fungal infection by Aureobasidium pullulans var. melanigenum: a case report.

    Science.gov (United States)

    Bolignano, Giuseppe; Criseo, Giuseppe

    2003-09-01

    We report on a rare case of disseminated nosocomial fungal infection due to Aureobasidium pullulans var. melanigenum in a severely traumatized patient. Repeated blood and urine cultures yielded multicellular filamentous hyphal structures of varying size accompanied by budding yeast-like-cells of ellipsoidal morphology. The patient became asymptomatic after fluconazole therapy.

  18. Potential of 4d-VAR for exigent forecasting of severe weather

    CERN Document Server

    Hoffman, Ross N; Nehrkorn, Thomas

    2011-01-01

    Severe storms, tropical cyclones, and associated tornadoes, floods, lightning, and microbursts threaten life and property. Reliable, precise, and accurate alerts of these phenomena can trigger defensive actions and preparations. However, these crucial weather phenomena are difficult to forecast. The objective of this paper is to demonstrate the potential of 4d-VAR (four dimensional variational data assimilation) for exigent forecasting (XF) of severe storm precursors and to thereby characterize the probability of a worst-case scenario. 4d-VAR is designed to adjust the initial conditions (IC) of a numerical weather prediction model consistent with the uncertainty of the prior estimate of the IC while at the same time minimizing the misfit to available observations. For XF the same approach is taken but instead of fitting observations, a measure of damage or loss or an equivalent proxy is maximized or minimized. To accomplish this will require development of a specialized cost function for 4d-VAR. When 4d-VAR s...

  19. In vitro clonal propagation of Mucuna pruriens var. utilis and its ...

    African Journals Online (AJOL)

    The Mucuna pruriens var. utilis is an important legume cover crop. Almost all the parts of the plant are reported to contain L-3,4-dihydroxy phenylalanine (L-Dopa). Here we report a rapid and reliable method for high fidelity micro-propagation. Auxiliary bud explants from 14-day-old seedlings were cultured on Murashige and ...

  20. Choosing Expected Shortfall Over VaR in Basel III Using Stochastic Dominance

    NARCIS (Netherlands)

    C-L. Chang (Chia-Lin); J.A. Jiménez-Martín (Juan-Ángel); E. Maasoumi (Esfandiar); M.J. McAleer (Michael); T. Pérez-Amaral (Teodosio)

    2016-01-01

    textabstractWe compare Value at Risk (VaR) and Expected Shortfall (ES) following a Stochastic Dominance (SD) approach frequently used to order distributions in terms of welfare and in portfolio selection. Basel Committee on Banking Supervision (BCBS) recommends bank risk managers to shift the

  1. A Vector AutoRegressive (VAR) Approach to the Credit Channel for ...

    African Journals Online (AJOL)

    This paper is an attempt to determine the presence and empirical significance of monetary policy and the bank lending view of the credit channel for Mauritius, which is particularly relevant at these times. A vector autoregressive (VAR) model of order three is used to examine the monetary transmission mechanism using ...

  2. The Antimicrobial Activity of the Essential Oil of Pistacia lentiscus var. Chia

    NARCIS (Netherlands)

    Gkogka, E.; Hazeleger, W.C.; Posthumus, M.A.; Beumer, R.R.

    2013-01-01

    The essential oil of the resin of Pistacia lentiscus var. Chia (mastic oil) was studied in vitro against a wide range of foodborne pathogenic and spoilage microorganisms with a diffusion and a dilution method. Furthermore its chemical composition was analyzed by means of Gas Chromatography-Mass

  3. Clinical laboratories collaborate to resolve differences in variant interpretations submitted to ClinVar.

    Science.gov (United States)

    Harrison, Steven M; Dolinsky, Jill S; Knight Johnson, Amy E; Pesaran, Tina; Azzariti, Danielle R; Bale, Sherri; Chao, Elizabeth C; Das, Soma; Vincent, Lisa; Rehm, Heidi L

    2017-10-01

    Data sharing through ClinVar offers a unique opportunity to identify interpretation differences between laboratories. As part of a ClinGen initiative, four clinical laboratories (Ambry, GeneDx, Partners Healthcare Laboratory for Molecular Medicine, and University of Chicago Genetic Services Laboratory) collaborated to identify the basis of interpretation differences and to investigate if data sharing and reassessment resolve interpretation differences by analyzing a subset of variants. ClinVar variants with submissions from at least two of the four participating laboratories were compared. For a subset of identified differences, laboratories documented the basis for discordance, shared internal data, independently reassessed with the American College of Medical Genetics and Genomics-Association for Molecular Pathology (ACMG-AMP) guidelines, and then compared interpretations. At least two of the participating laboratories interpreted 6,169 variants in ClinVar, of which 88.3% were initially concordant. Laboratories reassessed 242/724 initially discordant variants, of which 87.2% (211) were resolved by reassessment with current criteria and/or internal data sharing; 12.8% (31) of reassessed variants remained discordant owing to differences in the application of the ACMG-AMP guidelines. Participating laboratories increased their overall concordance from 88.3 to 91.7%, indicating that sharing variant interpretations in ClinVar-thereby allowing identification of differences and motivation to resolve those differences-is critical to moving toward more consistent variant interpretations.Genet Med advance online publication 09 March 2017.

  4. Forecasting VaR and ES of stock index portfolio: A Vine copula method

    Science.gov (United States)

    Zhang, Bangzheng; Wei, Yu; Yu, Jiang; Lai, Xiaodong; Peng, Zhenfeng

    2014-12-01

    Risk measurement has both theoretical and practical significance in risk management. Using daily sample of 10 international stock indices, firstly this paper models the internal structures among different stock markets with C-Vine, D-Vine and R-Vine copula models. Secondly, the Value-at-Risk (VaR) and Expected Shortfall (ES) of the international stock markets portfolio are forecasted using Monte Carlo method based on the estimated dependence of different Vine copulas. Finally, the accuracy of VaR and ES measurements obtained from different statistical models are evaluated by UC, IND, CC and Posterior analysis. The empirical results show that the VaR forecasts at the quantile levels of 0.9, 0.95, 0.975 and 0.99 with three kinds of Vine copula models are sufficiently accurate. Several traditional methods, such as historical simulation, mean-variance and DCC-GARCH models, fail to pass the CC backtesting. The Vine copula methods can accurately forecast the ES of the portfolio on the base of VaR measurement, and D-Vine copula model is superior to other Vine copulas.

  5. Utilizing nanobody technology to target non-immunodominant domains of VAR2CSA

    DEFF Research Database (Denmark)

    Ditlev, Sisse B; Florea, Raluca; Nielsen, Morten A

    2014-01-01

    called Nanobody, which represents the smallest known (15 kDa) intact, native antigen-binding fragment. In this study, we have used the Nanobody technology, an approach new to malaria research, to generate small and functional antibody fragments recognizing unique epitopes broadly distributed on VAR2CSA....

  6. Genetic structure of Hepatica nobilis var. japonica, focusing on within population flower color polymorphism.

    Science.gov (United States)

    Kameoka, Shinichiro; Sakio, Hitoshi; Abe, Harue; Ikeda, Hajime; Setoguchi, Hiroaki

    2017-03-01

    How phenotypic or genetic diversity is maintained in a natural habitat is a fundamental question in evolutionary biology. Flower color polymorphism in plants is a common polymorphism. Hepatica nobilis var. japonica on the Sea of Japan (SJ) side of the Japanese mainland exhibits within population flower color polymorphism (e.g., white, pink, and purple), while only white flowers are observed on the Pacific Ocean (PO) side. To determine the relationships between flower color polymorphism, within and among populations, and the genetic structure of H. nobilis var. japonica, we estimated the genetic variation using simple sequence repeat (SSR) markers. First, we examined whether cryptic lineages corresponding to distinct flower colors contribute to the flower color polymorphisms in H. nobilis var. japonica. In our field observations, no bias in color frequency was observed among populations on Sado Island, a region with high variation in flower color. Simple sequence repeat (SSR) analyses revealed that 18% of the genetic variance was explained by differences among populations, whereas no genetic variation was explained by flower color hue or intensity (0% for both components). These results indicate that the flower color polymorphism is likely not explained by cryptic lineages that have different flower colors. In contrast, populations in the SJ and PO regions were genetically distinguishable. As with the other plant species in these regions, refugial isolation and subsequent migration history may have caused the genetic structure as well as the spatially heterogeneous patterns of flower color polymorphisms in H. nobilis var. japonica.

  7. Effect of acorn burying depth on germination, seedling emergence and development of Quercus aliena var. acuteserrata

    NARCIS (Netherlands)

    Werger, M.J.A.; Guo, Ke; Li, Rui

    2001-01-01

    Acorns of Quercus aliena var. acuteserrata are often predated by small mammals and birds in natural forests. These animals not only eat the acorns during the acorn ripening season, but also cache and hoard most of the remaining acorns on the forest floor in the soil for their future use. These

  8. Phytochemical Properties and Proximate Composition of Papaya (Carica papaya L. var solo 8 Peels

    Directory of Open Access Journals (Sweden)

    Adingra Kouassi Martial-Didier

    2017-07-01

    Full Text Available Papaya (Carica papaya is a common tropical fruit used for nutrition as well as medicinal purposes. Apart from fruit, seed, latex and other plant parts of papaya tree have been shown to have medicinal properties. Since, no systematic study has been performed on nutritional analysis of papaya (Carica papaya L. var solo 8 peels. In this study, the proximate composition, mineral element profile and phytochemical composition of papaya (Carica papaya L. var solo 8 peels were investigated. The peels were harvested fresh, dried in an oven at 45°C for 48 hours, ground and analyzed according to standard procedures. Proximate analysis showed high level of proteins (11.67 ± 0.04 %, crude fibre (32.51 ± 0.03 %, carbohydrate (47.33 ± 0.08 %, ash (5.98 ± 0.03 % 0.03 % and fat (2.51 ± 0.13 %. Mineral analysis indicated the papaya (Carica papaya L. var solo 8 peels were specifically rich in potassium and phosphorus. Potassium was found to be the most abundant mineral present in the peels (516.33 ± 0.82 mg/100g. Phytochemical composition showed high level of total phenolic (65.48 ± 0.39 mg (GAE/100 g DW, flavonoids (5.58 ± 0.83 mg (QE/100 g DW and tannins (10.51 ± 0.93 mg (TAE/100 g DW. The methanolic extracts of the papaya (Carica papaya L. var solo 8 peels exhibited the high DPPH radical scavenging activities (81.89 ± 0.14 %.These data indicated that this papaya (Carica papaya L. var solo 8 peels could constitute a potential good source of natural antioxidant for local population.

  9. Photobiont Relationships and Phylogenetic History of Dermatocarpon luridum var. luridum and Related Dermatocarpon Species.

    Science.gov (United States)

    Fontaine, Kyle M; Beck, Andreas; Stocker-Wörgötter, Elfie; Piercey-Normore, Michele D

    2012-10-10

    Members of the genus Dermatocarpon are widespread throughout the Northern Hemisphere along the edge of lakes, rivers and streams, and are subject to abiotic conditions reflecting both aquatic and terrestrial environments. Little is known about the evolutionary relationships within the genus and between continents. Investigation of the photobiont(s) associated with sub-aquatic and terrestrial Dermatocarpon species may reveal habitat requirements of the photobiont and the ability for fungal species to share the same photobiont species under different habitat conditions. The focus of our study was to determine the relationship between Canadian and Austrian Dermatocarpon luridum var. luridum along with three additional sub-aquatic Dermatocarpon species, and to determine the species of photobionts that associate with D. luridum var. luridum. Culture experiments were performed to identify the photobionts. In addition, the question of the algal sharing potential regarding different species of Dermatocarpon was addressed. Specimens were collected from four lakes in northwestern Manitoba, Canada and three streams in Austria. Three Canadian and four Austrian thalli of D. luridum var. luridum were selected for algal culturing. The nuclear Internal Transcribed Spacer (ITS) rDNA gene of the fungal partner along with the algal ITS rDNA gene was sequenced to confirm the identity of the lichen/photobiont and afterwards the same data sets were used in phylogenetic analyses to assess algal sharing. The green algal photobiont was identified as Diplosphaera chodatii (Trebouxiophyceae). The phylogenetic analyses of Canadian and Austrian D. luridum var. luridum revealed that ITS sequences are identical despite the vast geographic distance. Phylogenetic placement of D. luridum var. decipiens and D. arnoldianum suggested that a re-examination of the species status might be necessary. This study concluded that additional photobiont culture experiments should be conducted to answer the

  10. Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes

    Directory of Open Access Journals (Sweden)

    Rowe J

    2009-08-01

    Full Text Available Abstract Background Guanine-rich nucleic acid sequences are capable of folding into an intramolecular four-stranded structure called a G-quadruplex. When found in gene promoter regions, G-quadruplexes can downregulate gene expression, possibly by blocking the transcriptional machinery. Here we have used a genome-wide bioinformatic approach to identify Putative G-Quadruplex Sequences (PQS in the Plasmodium falciparum genome, along with biophysical techniques to examine the physiological stability of P. falciparum PQS in vitro. Results We identified 63 PQS in the non-telomeric regions of the P. falciparum clone 3D7. Interestingly, 16 of these PQS occurred in the upstream region of a subset of the P. falciparum var genes (group B var genes. The var gene family encodes PfEMP1, the parasite's major variant antigen and adhesin expressed at the surface of infected erythrocytes, that plays a key role in malaria pathogenesis and immune evasion. The ability of the PQS found in the upstream regions of group B var genes (UpsB-Q to form stable G-quadruplex structures in vitro was confirmed using 1H NMR, circular dichroism, UV spectroscopy, and thermal denaturation experiments. Moreover, the synthetic compound BOQ1 that shows a higher affinity for DNA forming quadruplex rather than duplex structures was found to bind with high affinity to the UpsB-Q. Conclusion This is the first demonstration of non-telomeric PQS in the genome of P. falciparum that form stable G-quadruplexes under physiological conditions in vitro. These results allow the generation of a novel hypothesis that the G-quadruplex sequences in the upstream regions of var genes have the potential to play a role in the transcriptional control of this major virulence-associated multi-gene family.

  11. Identification and Characterization of MicroRNAs in Ginkgo biloba var. epiphylla Mak.

    Science.gov (United States)

    Zhang, Qian; Li, Jihong; Sang, Yalin; Xing, Shiyan; Wu, Qikui; Liu, Xiaojing

    2015-01-01

    Ginkgo biloba, a dioecious plant known as a living fossil, is an ancient gymnosperm that stands distinct from other gymnosperms and angiosperms. Ginkgo biloba var. epiphylla (G. biloba var. epiphylla), with ovules borne on the leaf blade, is an unusual germplasm derived from G. biloba. MicroRNAs (miRNAs) are post-transcriptional gene regulators that play critical roles in diverse biological and metabolic processes. Currently, little is known about the miRNAs involved in the key stage of partly epiphyllous ovule germination in G. biloba var. epiphylla. Two small RNA libraries constructed from epiphyllous ovule leaves and normal leaves of G. biloba var. epiphylla were sequenced on an Illumina/Solexa platform. A total of 82 miRNA sequences belonging to 23 families and 53 putative novel miRNAs were identified in the two libraries. Differential expression analysis showed that 25 conserved and 21 novel miRNAs were differentially expressed between epiphyllous ovule leaves and normal leaves. The expression patterns of partially differentially expressed miRNAs and the transcript levels of their predicted target genes were validated by quantitative real time RT-PCR. All the expression profiles of the 21 selected miRNAs were similar to those detected by Solexa deep sequencing. Additionally, the transcript levels of almost all the putative target genes of 9 selected miRNAs were opposite to those of the corresponding miRNAs. The putative target genes of the differentially expressed miRNAs were annotated with Gene Ontology terms related to reproductive process, metabolic process and responding to stimulus. This work presents a broad range of small RNA transcriptome data obtained from epiphyllous ovule and normal leaves of G. biloba var. epiphylla, which may provide insights into the miRNA-mediated regulation in the epiphyllous ovule germination process.

  12. Identification and Characterization of MicroRNAs in Ginkgo biloba var. epiphylla Mak.

    Directory of Open Access Journals (Sweden)

    Qian Zhang

    Full Text Available Ginkgo biloba, a dioecious plant known as a living fossil, is an ancient gymnosperm that stands distinct from other gymnosperms and angiosperms. Ginkgo biloba var. epiphylla (G. biloba var. epiphylla, with ovules borne on the leaf blade, is an unusual germplasm derived from G. biloba. MicroRNAs (miRNAs are post-transcriptional gene regulators that play critical roles in diverse biological and metabolic processes. Currently, little is known about the miRNAs involved in the key stage of partly epiphyllous ovule germination in G. biloba var. epiphylla. Two small RNA libraries constructed from epiphyllous ovule leaves and normal leaves of G. biloba var. epiphylla were sequenced on an Illumina/Solexa platform. A total of 82 miRNA sequences belonging to 23 families and 53 putative novel miRNAs were identified in the two libraries. Differential expression analysis showed that 25 conserved and 21 novel miRNAs were differentially expressed between epiphyllous ovule leaves and normal leaves. The expression patterns of partially differentially expressed miRNAs and the transcript levels of their predicted target genes were validated by quantitative real time RT-PCR. All the expression profiles of the 21 selected miRNAs were similar to those detected by Solexa deep sequencing. Additionally, the transcript levels of almost all the putative target genes of 9 selected miRNAs were opposite to those of the corresponding miRNAs. The putative target genes of the differentially expressed miRNAs were annotated with Gene Ontology terms related to reproductive process, metabolic process and responding to stimulus. This work presents a broad range of small RNA transcriptome data obtained from epiphyllous ovule and normal leaves of G. biloba var. epiphylla, which may provide insights into the miRNA-mediated regulation in the epiphyllous ovule germination process.

  13. Antioxidant properties and global metabolite screening of the probiotic yeast Saccharomyces cerevisiae var. boulardii.

    Science.gov (United States)

    Datta, Suprama; Timson, David J; Annapure, Uday S

    2017-07-01

    Saccharomyces cerevisiae var. boulardii is the only yeast species with probiotic properties. It is considered to have therapeutic significance in gastrointestinal disorders. In the present study, a comparative physiological study between this yeast and Saccharomyces cerevisiae (BY4742) was performed by evaluating two prominent traits of probiotic species, responses to different stress conditions and antioxidant capacity. A global metabolite profile was also developed aiming to identify which therapeutically important secondary metabolites are produced. Saccharomyces cerevisiae var. boulardii showed no significant difference in growth patterns but greater stress tolerance compared to S. cerevisiae. It also demonstrated a six- to 10-fold greater antioxidant potential (judged by the 1,1-diphenyl-2-picrylhydrazyl assay), with a 70-fold higher total phenolic content and a 20-fold higher total flavonoid content in the extracellular fraction. These features were clearly differentiated by principal component analysis and further indicated by metabolite profiling. The extracellular fraction of the S. cerevisiae var. boulardii cultures was found to be rich in polyphenolic metabolites: vanillic acid, cinnamic acid, phenyl ethyl alcohol (rose oil), erythromycin, amphetamine and vitamin B6 , which results in the antioxidant capacity of this strain. The present study presents a new perspective for differentiating the two genetically related strains of yeast, S. cerevisiae and S. cerevisiae var. boulardii by assessing their metabolome fingerprints. In addition to the correlation of the phenotypic properties with the secretory metabolites of these two yeasts, the present study also emphasizes the potential to exploit S. cerevisiae var. boulardii in the industrial production of these metabolites. © 2016 Society of Chemical Industry. © 2016 Society of Chemical Industry.

  14. Antibody responses to the full-length VAR2CSA and its DBL domains in Cameroonian children and teenagers

    DEFF Research Database (Denmark)

    Fodjo, Barriere A Y; Atemnkeng, Njika; Esemu, Livo

    2016-01-01

    levels of antibodies (Ab) to the variant. VAR2CSA is a protein coded for by one of 60 var genes that is expressed on the surface of infected erythrocytes (IE) and mediates IE binding to the placenta. The idea that Ab to VAR2CSA are pregnancy-associated was challenged when VAR2CSA-specific Ab were...... reported in children and men. However, the frequency and conditions under which Ab to VAR2CSA are produced outside pregnancy is unclear. This study sought to determine frequency, specificity and level of Ab to VAR2CSA produced in children and whether children with hyperparasitaemia and severe malaria...... villages and 160 children with severe malaria from the city.  Results: Low Ab levels to VAR2CSA were detected in children; however, Ab levels to FV2 in teenagers were rare. Children preferentially recognized DBL2 (56-70%) and DBL4 (50-60%), while multigravidae produced high levels of IgG to DBL3, DBL5...

  15. [Effects of mycorrhizal colonization and medicine quality of Paris polyphylla var. yunnanensis inoculated by different foreign AM fungi species].

    Science.gov (United States)

    Zhou Nong; Ding, Bo; Feng, Yuan; Qi, Wen-hua; Zhang, Hua; Guo, Dong-qin; Xiang, Jun

    2015-08-01

    After 28 foreign species of AM fungi were inoculated in sterilized soil, the effects of the AM mycorrhizal colonization and the medicine quality of Paris polyphylla var. yunnanensis were observed by combination of inoculation test in pot at room temperature and instrumental analysis. The results showed that, compared with control group (CK), the inoculation of foreign AM fungi in the soil influenced the spore density, mycorrhizal infection rate, and colonization intensity of AM fungi in root system of P. polyphylla var. yunnanensis. The inoculation of foreign AM fungi enhanced the mycorrhiza viability of P. polyphylla var. yunnanensis by increasing the activity of succinic dehydrogenase (SDH) and alkaline phosphatase (ALP) in intraradical hyphae. The content of single steroid saponin in rhizome of P. polyphylla var. yunnanensis showed variation after P. polyphylla var. yunnanensis was inoculated by different foreign species of AM fungi, which was beneficial for increasing the medicine quality; however, the kinds of steroid saponin showed no difference. In a degree, there was a selectivity of symbiosis between P. polyphylla var. yunnanensis and foreign AM fungi. And we found that the Claroideoglomus claroideum and Racocetra coralloidea were best foreign AM fungi species for cultivating P. polyphylla var. yunnanensis under field condition.

  16. Selective upregulation of a single distinctly structured var gene in chondroitin sulphate A-adhering Plasmodium falciparum involved in pregnancy-associated malaria

    DEFF Research Database (Denmark)

    Salanti, Ali; Staalsoe, Trine; Lavstsen, Thomas

    2003-01-01

    after selection for adhesion to CSA in vitro. The gene belongs to a highly conserved and common var gene subfamily (var2csa). The var2csa genes are structurally distinct from all other var genes in the parasite genome in lacking both CIDR and DBL-gamma domains. These domains have previously been...

  17. Pramoginių orientacinių varžybų organizavimo poreikis Lietuvos liaudies buities muziejuje

    OpenAIRE

    Morkūnaitė, Rūta

    2013-01-01

    Darbo objektas: pramoginių orientacinių varžybų organizavimo poreikis Lietuvos liaudies buities muziejuje. Darbo tikslas: nustatyti pramoginių orientacinių varžybų organizavimo poreikį Lietuvos liaudies buities muziejuje. Darbo uždaviniai: 1. Pateikti renginių organizavimo sampratą ir klasifikavimą; 2. Apibrėžti sportinių renginių organizavimo ypatumus; 3. Atskleisti pramoginių orientacinių varžybų organizavimo ir formavimo etapus; 4. Ištirti ir įvertinti pramoginių or...

  18. Evidence for globally shared, cross-reacting polymorphic epitopes in the pregnancy-associated malaria vaccine candidate VAR2CSA

    DEFF Research Database (Denmark)

    Avril, Marion; Kulasekara, Bridget R; Gose, Severin O

    2008-01-01

    Pregnancy-associated malaria (PAM) is characterized by the placental sequestration of Plasmodium falciparum-infected erythrocytes (IEs) with the ability to bind to chondroitin sulfate A (CSA). VAR2CSA is a leading candidate for a pregnancy malaria vaccine, but its large size ( approximately 350 k......Da) and extensive polymorphism may pose a challenge to vaccine development. In this study, rabbits were immunized with individual VAR2CSA Duffy binding-like (DBL) domains expressed in Pichia pastoris or var2csa plasmid DNA and sera were screened on different CSA-binding parasite lines. Rabbit antibodies to three...

  19. Identification of a Major Dimorphic Region in the Functionally Critical N-Terminal ID1 Domain of VAR2CSA

    DEFF Research Database (Denmark)

    Doritchamou, Justin; Sabbagh, Audrey; Jespersen, Jakob S

    2015-01-01

    The VAR2CSA protein of Plasmodium falciparum is transported to and expressed on the infected erythrocyte surface where it plays a key role in placental malaria (PM). It is the current leading candidate for a vaccine to prevent PM. However, the antigenic polymorphism integral to VAR2CSA poses...... a challenge for vaccine development. Based on detailed analysis of polymorphisms in the sequence of its ligand-binding N-terminal region, currently the main focus for vaccine development, we assessed var2csa from parasite isolates infecting pregnant women. The results reveal for the first time the presence...

  20. Penurunan Garam Klorida Air Laut Dengan Memanfaatkan Modifikasi Pati Dari Limbah Bonggol Pisang Ambon (Musa Paradisiaca Var Sapientum)

    OpenAIRE

    Rabbani, Aulia Husna; -, Alimuddin; Saleh, Chairul

    2015-01-01

    The research of desalination the sea water by utilization of the strach bump a “Pisang Ambon (Musa paradisiaca var sapientum)” modification has been done. Modification of starch bump “Pisang Ambon (Musa paradisiaca var sapientum)” had be a ability better than starch bump “Pisang Ambon (Musa paradisiaca var sapientum)” in the levels of chloride. The variation upon which to do to absorb chloride of sea water which are starch, starch been activated NaOH and starch acetate bump of a “Pisang Ambon...

  1. Accumulation of trehalose in the thermophilic fungus Chaetomium thermophilum var. coprophilum in response to heat or salt stress

    DEFF Research Database (Denmark)

    Jepsen, Helene Friborg; Jensen, B.

    2004-01-01

    The disaccharide trehalose, known to be an effective protectant against various kinds of stress, was observed to accumulate in the cytosol of Chaetomium thermophilum var. coprophilum during heat stress. Trehalose was apparently neither involved in the defence of C. thermophilum var. coprophilum...... against high concentrations of sodium chloride nor directly linked to thermophily. In C. thermophilum var. coprophilum three different trehalose hydrolyzing activities were eluted from a mono Q anion exchange column by sodium chloride concentrations of 0.10, 0.15 and 0.24 M, respectively....

  2. New family of pectinase genes PGU1b-PGU3b of the pectinolytic yeast Saccharomyces bayanus var. uvarum.

    Science.gov (United States)

    Naumov, G I; Shalamitskiy, M Yu; Naumova, E S

    2016-03-01

    Using yeast genome databases and literature data, we have conducted a phylogenetic analysis of pectinase PGU genes from Saccharomyces strains assigned to the biological species S. arboricola, S. bayanus (var. uvarum), S. cariocanus, S. cerevisiae, S. kudriavzevii, S. mikatae, S. paradoxus, and hybrid taxon S. pastorianus (syn. S. carlsbergensis). Single PGU genes were observed in all Saccharomyces species, except S. bayanus. The superfamily of divergent PGU genes has been documented in S. bayanus var. uvarum for the first time. Chromosomal localization of new PGU1b, PGU2b, and PGU3b genes in the yeast S. bayanus var. uvarum has been determined by molecular karyotyping and Southern hybridization.

  3. Radioactivity in a mountain ecosystem: the Haut Bassin du Var; La radioactivite dans un ecosysteme de montagne: le haut bassin du var

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2002-07-01

    After the Chernobyl accident, the IPSN realized a study of the radioactive fallout in the mountain area of the Var (France). Today the main radionuclides are the cesium 134 and 137, others disappeared because of their short half-life. In this paper, the artificial radioactivity of soils and sediments is concerned. The study shows a concentration of the contamination in some specific areas, especially in soils abounding in organic matter. The dose measured can not lead to significant exposures. (A.L.B.)

  4. Crecimiento de Plantas de Remolacha (Beta vulgaris L. var. Crosby Egipcia) Bajo Coberturas de Color Growth of Beet (Beta vulgaris L. var. Crosby Egipcia) under Colored Covers

    OpenAIRE

    Fánor Casierra-Posada; José Rogelio Pinto-Correa

    2011-01-01

    La respuesta de las plantas a diferente color en la iluminación, se atribuye a fotorreceptores que conducen a diversas expresiones fenotípicas en diferentes niveles y etapas del desarrollo vegetal. Para determinar si el color de iluminación en que se cultivan las plantas de remolacha (Beta vulgaris L. var. Crosby Egipcia), afecta su crecimiento, rendimiento y calidad, se realizó en Duitama -; Colombia, un estudio bajo coberturas de color azul, rojo o transparente. Para conseguir los colores s...

  5. Herencia de la resistencia a Phoma andina var. Crystalliniformis en tomate Resistance hederabillty of Phoma andina var. Eristalliniformis in tomato

    Directory of Open Access Journals (Sweden)

    Cortina Guerrero Hernando Alfonso

    1988-12-01


    dificultades, la resistencia de L. hirsutum a L. esculentum, siempre que no existan efectos pleiotrópicos o de grupos de ligamiento.
    The inheritance of Phoma andina var. erystalliniformis resistanee derived from the wild species, related to tomate, Lyeopersieon hirsutum was studies at "La Selva" ICA's Experiment Station located at Rionegro (Antioquia, between may and september of 1987. The study was done by employing 6 families in which four different resistent L.
    hirsutum accessions and four susceptible L. eseulentum genotypes were used as parents. Each of the families included: the parents, the generations F1 and F2 and backcrosses from the F1 to each one of the parents. The
    researeh was carried out with an complete block design with tree replicates. The plants were scored individually, for some families 60 days after transplanting and for the remaning 80 days after transplantinq, by employing a scale in which 7 means killed plants and O no symtoms. Both, the original and the transformed data were subject the following analysis: mean components by using the scaling test (Mather and Jinks, 1971 and Cavalli test; variance components by employing Mather's methology (Mather y Jinks, 1971; different estimates of heritability and the minimum number of gene pairs differentiating the susceptible and resistent parents.
    In all the studied familles there was an additive variance with high values, a dominance variance close to zero and low environmental variance. The heritability for the resistance was high both in broad and narrow sense, The minimum number of gene pairs differentiating the resistant and susceptible parents was estimated between 3 and 4.
    Based on the aboye, it is possible to introduce in the cultivated tomato Phoma andina resistance, being important determine before to do so, possible deleterous pleitropic
    effects or deletereous linkage groups with the resistant genes.

  6. Early studies on the effect of peptide growth factor phytosulfokine-α on Brassica oleracea var. capitata L. protoplasts

    National Research Council Canada - National Science Library

    Agnieszka Kiełkowska; Adela Adamus

    2017-01-01

    .... We examined the effect of supplementation of liquid culture medium with 0.1 µM phytosulfokine-α (PSK-α) on protoplast viability and division frequencies in seven accessions of Brassica oleracea var...

  7. Potensi minuman bubuk kedelai (var. Galunggung sebagai minuman fungsional: sifat fisikokimia, efek hipoglikemik dan hipokolesterolemik serta status antioksidan

    Directory of Open Access Journals (Sweden)

    Setyaningrum Aviriani

    2012-04-01

    Conclusion: Powdered soybean (var. Galunggung beverage has the potential to be developed as functional drink with several health claims, i.e. reduce glucose and cholesterol levels, and improve antioxidant status.

  8. Detection of Papaya ringspot virus type W infecting the cucurbit weed Cucumis melo var. dudaim in Florida

    Science.gov (United States)

    This is the first report of Papaya ringspot virus type W infecting Cucumis melo var. dudaim, a cucurbit weed, in Florida. It provides an overview of this virus reservoir for growers, extension workers, crop consultants and research and regulatory scientists....

  9. Dynamics of anti-VAR2CSA immunoglobulin G response in a cohort of senegalese pregnant women

    DEFF Research Database (Denmark)

    Tuikue Ndam, N G; Salanti, A; Le-Hesran, J-Y

    2006-01-01

    BACKGROUND: Pregnancy-associated malaria (PAM) is precipitated by the accumulation of parasites in the placental intervillous spaces and causes maternal anemia and low birth weight. In PAM, placental parasites adhere to chondroitin sulfate A (CSA) through a unique set of variant surface antigens...... (VSAPAM). Several studies have shown that 1 var gene, var2csa, is transcribed at high levels and expressed in CSA-binding Plasmodium falciparum parasites. METHODS: Plasma levels of anti-VAR2CSA immunoglobulin G (IgG) in Senegalese women were measured during pregnancy by enzyme-linked immunosorbent assay......CSA IgGs are involved in clinical protection against pregnancy-associated malaria and strengthens the hope for making a VAR2CSA-based vaccine....

  10. Variation in phenology and monoterpene patterns of defoliated and nondefoliated Douglas-fir (Pseudotsuga menziesii var. glauca).

    Science.gov (United States)

    Rose-Marie Muzika; Judith Engle; Catherine Parks; Boyd. Wickman

    1993-01-01

    Foliage was collected from paired Douglas-fir (Pseudotsuga menziesii var. glauca (Beissn.) Franco) trees characterized as either "resistant" or "susceptible" western spruce budworm (Choristoneura occidentalis Freeman (Lepidoptera: Tortricidae) attack. Resistant trees produced more...

  11. Evaluacion de las condiciones de extraccion por hidrodestilacion -cohobacion del aceite esencial del follaje de Pinus caribaea Morelet var. caribaea

    National Research Council Canada - National Science Library

    Fernandez-Sanchez, Felix; Marin-Moran, Jorge Eric; Teixeira-Pinto, Zeneida; de Carvalho-Queiro, Margareth Maria; Escalona-Arranz, Julio Cesar

    2013-01-01

    ...) del aceite esencial del follaje de Pinus caribaea Morelet var. caribaea (droga seca). Los factores estudiados en el proceso de extraccion fueron el tamano de particula (1,25; 0,6; 0,25 y 0,18 mm...

  12. A Novel Virus-Like Particle Based Vaccine Platform Displaying the Placental Malaria Antigen VAR2CSA.

    Directory of Open Access Journals (Sweden)

    Susan Thrane

    Full Text Available Placental malaria caused by Plasmodium falciparum is a major cause of mortality and severe morbidity. Clinical testing of a soluble protein-based vaccine containing the parasite ligand, VAR2CSA, has been initiated. VAR2CSA binds to the human receptor chondroitin sulphate A (CSA and is responsible for sequestration of Plasmodium falciparum infected erythrocytes in the placenta. It is imperative that a vaccine against malaria in pregnancy, if administered to women before they become pregnant, can induce a strong and long lasting immune response. While most soluble protein-based vaccines have failed during clinical testing, virus-like particle (VLP based vaccines (e.g., the licensed human papillomavirus vaccines have demonstrated high efficacy, suggesting that the spatial assembly of the vaccine antigen is a critical parameter for inducing an optimal long-lasting protective immune response. We have developed a VLP vaccine display platform by identifying regions of the HPV16 L1 coat protein where a biotin acceptor site (AviTagTM can be inserted without compromising VLP-assembly. Subsequent biotinylation of Avi-L1 VLPs allow us to anchor monovalent streptavidin (mSA-fused proteins to the biotin, thereby obtaining a dense and repetitive VLP-display of the vaccine antigen. The mSA-VAR2CSA antigen was delivered on the Avi-L1 VLP platform and tested in C57BL/6 mice in comparison to two soluble protein-based vaccines consisting of naked VAR2CSA and mSA-VAR2CSA. The mSA-VAR2CSA Avi-L1 VLP and soluble mSA-VAR2CSA vaccines induced higher antibody titers than the soluble naked VAR2CSA vaccine after three immunizations. The VAR2CSA Avi-L1 VLP vaccine induced statistically significantly higher endpoint titres compared to the soluble mSA-VAR2CSA vaccine, after 1st and 2nd immunization; however, this difference was not statistically significant after 3rd immunization. Importantly, the VLP-VAR2CSA induced antibodies were functional in inhibiting the binding of

  13. Insight into antigenic diversity of VAR2CSA-DBL5ε domain from multiple Plasmodium falciparum placental isolates.

    Directory of Open Access Journals (Sweden)

    Sédami Gnidehou

    Full Text Available BACKGROUND: Protection against pregnancy associated malaria (PAM is associated with high levels of anti-VAR2CSA antibodies. This protection is obtained by the parity dependent acquisition of anti-VAR2CSA antibodies. Distinct parity-associated molecular signatures have been identified in VAR2CSA domains. These two observations combined point to the importance of identifying VAR2CSA sequence variation, which facilitate parasitic evasion or subversion of host immune response. Highly conserved domains of VAR2CSA such as DBL5ε are likely to contain conserved epitopes, and therefore do constitute attractive targets for vaccine development. METHODOLOGY/PRINCIPAL FINDINGS: VAR2CSA DBL5ε-domain sequences obtained from cDNA of 40 placental isolates were analysed by a combination of experimental and in silico methods. Competition ELISA assays on two DBL5ε variants, using plasma samples from women from two different areas and specific mice hyperimmune plasma, indicated that DBL5ε possess conserved and cross-reactive B cell epitopes. Peptide ELISA identified conserved areas that are recognised by naturally acquired antibodies. Specific antibodies against these peptides labelled the native proteins on the surface of placental parasites. Despite high DBL5ε sequence homology among parasite isolates, sequence analyses identified motifs in DBL5ε that discriminate parasites according to donor's parity. Moreover, recombinant proteins of two VAR2CSA DBL5ε variants displayed diverse recognition patterns by plasma from malaria-exposed women, and diverse proteoglycan binding abilities. CONCLUSIONS/SIGNIFICANCE: This study provides insights into conserved and exposed B cell epitopes in DBL5ε that might be a focus for cross reactivity. The importance of sequence variation in VAR2CSA as a critical challenge for vaccine development is highlighted. VAR2CSA conformation seems to be essential to its functionality. Therefore, identification of sequence variation sites

  14. Insight into antigenic diversity of VAR2CSA-DBL5ε domain from multiple Plasmodium falciparum placental isolates.

    Science.gov (United States)

    Gnidehou, Sédami; Jessen, Leon; Gangnard, Stéphane; Ermont, Caroline; Triqui, Choukri; Quiviger, Mickael; Guitard, Juliette; Lund, Ole; Deloron, Philippe; Ndam, Nicaise Tuikue

    2010-10-01

    Protection against pregnancy associated malaria (PAM) is associated with high levels of anti-VAR2CSA antibodies. This protection is obtained by the parity dependent acquisition of anti-VAR2CSA antibodies. Distinct parity-associated molecular signatures have been identified in VAR2CSA domains. These two observations combined point to the importance of identifying VAR2CSA sequence variation, which facilitate parasitic evasion or subversion of host immune response. Highly conserved domains of VAR2CSA such as DBL5ε are likely to contain conserved epitopes, and therefore do constitute attractive targets for vaccine development. VAR2CSA DBL5ε-domain sequences obtained from cDNA of 40 placental isolates were analysed by a combination of experimental and in silico methods. Competition ELISA assays on two DBL5ε variants, using plasma samples from women from two different areas and specific mice hyperimmune plasma, indicated that DBL5ε possess conserved and cross-reactive B cell epitopes. Peptide ELISA identified conserved areas that are recognised by naturally acquired antibodies. Specific antibodies against these peptides labelled the native proteins on the surface of placental parasites. Despite high DBL5ε sequence homology among parasite isolates, sequence analyses identified motifs in DBL5ε that discriminate parasites according to donor's parity. Moreover, recombinant proteins of two VAR2CSA DBL5ε variants displayed diverse recognition patterns by plasma from malaria-exposed women, and diverse proteoglycan binding abilities. This study provides insights into conserved and exposed B cell epitopes in DBL5ε that might be a focus for cross reactivity. The importance of sequence variation in VAR2CSA as a critical challenge for vaccine development is highlighted. VAR2CSA conformation seems to be essential to its functionality. Therefore, identification of sequence variation sites in distinct locations within VAR2CSA, affecting antigenicity and/or binding properties

  15. Evaluation of antiulcerogenic activity of aqueous extract of Brassica oleracea var. capitata (cabbage) on Wistar rat gastric ulceration

    OpenAIRE

    Carvalho, Camilo Amaro de; Fernandes,Kenner Moraes; Matta, Sérgio Luiz Pinto; Silva, Marcelo Barreto da; De Oliveira, Leandro Licursi; Fonseca, Cláudio César

    2011-01-01

    CONTEXT: The cabbage (Brassica oleraceae var. capitata) is an herbaceous and leafy plant which belongs to the Brassicaceae family, native to coastal southern and Western Europe. Used in cooking for its nutritional value also has known anti-inflammatory activity. OBJECTIVE We studied the antiulcerogenic activity of aqueous extract of Brassica oleracea var. capitata (AEB) in order to validate ethnobotanical claims regarding the plant use in the gastric disorders. METHOD: Acute gastric ulcers we...

  16. A var gene upstream element controls protein synthesis at the level of translation initiation in Plasmodium falciparum.

    Directory of Open Access Journals (Sweden)

    Nicolas M B Brancucci

    Full Text Available Clonally variant protein expression in the malaria parasite Plasmodium falciparum generates phenotypic variability and allows isogenic populations to adapt to environmental changes encountered during blood stage infection. The underlying regulatory mechanisms are best studied for the major virulence factor P. falciparum erythrocyte membrane protein 1 (PfEMP1. PfEMP1 is encoded by the multicopy var gene family and only a single variant is expressed in individual parasites, a concept known as mutual exclusion or singular gene choice. var gene activation occurs in situ and is achieved through the escape of one locus from epigenetic silencing. Singular gene choice is controlled at the level of transcription initiation and var 5' upstream (ups sequences harbour regulatory information essential for mutually exclusive transcription as well as for the trans-generational inheritance of the var activity profile. An additional level of control has recently been identified for the var2csa gene, where an mRNA element in the 5' untranslated region (5' UTR is involved in the reversible inhibition of translation of var2csa transcripts. Here, we extend the knowledge on post-transcriptional var gene regulation to the common upsC type. We identified a 5' UTR sequence that inhibits translation of upsC-derived mRNAs. Importantly, this 5' UTR element efficiently inhibits translation even in the context of a heterologous upstream region. Further, we found var 5' UTRs to be significantly enriched in uAUGs which are known to impair the efficiency of protein translation in other eukaryotes. Our findings suggest that regulation at the post-transcriptional level is a common feature in the control of PfEMP1 expression in P. falciparum.

  17. Kipling var racist og sexist. Men værd at læse

    DEFF Research Database (Denmark)

    Møller, Michael

    2017-01-01

    For over 100 år siden fik Rudyard Kipling Nobelprisen i Litteratur. Han var særdeles alsidig. Han skrev både digte, noveller og bøger, og han skrev både for børn, teenagere og voksne. Han skrev krigsdigte, han skrev digte, der hyldede erhvervslivet, han skrev digte for at fremme bedre pensioner t...... gamle soldater, og han skrev digte til børn. Også hans bøger var meget varierede. I dag er det vel hovedsagelig ' Junglebogen', som unge mennesker kender Kipling for, og det udelukkende på grund af Disney-filmen. Kiplings ry faldt umådeligt efter hans død...

  18. Dynamic VaR Measurement of Gold Market with SV-T-MN Model

    Directory of Open Access Journals (Sweden)

    Fenglan Li

    2017-01-01

    Full Text Available VaR (Value at Risk in the gold market was measured and predicted by combining stochastic volatility (SV model with extreme value theory. Firstly, for the fat tail and volatility persistence characteristics in gold market return series, the gold price return volatility was modeled by SV-T-MN (SV-T with Mixture-of-Normal distribution model based on state space. Secondly, future sample volatility prediction was realized by using approximate filtering algorithm. Finally, extreme value theory based on generalized Pareto distribution was applied to measure dynamic risk value (VaR of gold market return. Through the proposed model on the price of gold, empirical analysis was investigated; the results show that presented combined model can measure and predict Value at Risk of the gold market reasonably and effectively and enable investors to further understand the extreme risk of gold market and take coping strategies actively.

  19. Complete chloroplast genome sequence of Fritillaria unibracteata var. wabuensis based on SMRT Sequencing Technology.

    Science.gov (United States)

    Li, Ying; Li, Qiushi; Li, Xiwen; Song, Jingyuan; Sun, Chao

    2016-09-01

    Fritillaria unibracteata var. wabuensis is an important medicinal plant used for the treatment of cough symptoms related to the respiratory system. The chloroplast genome of F. unibracteata var. wabuensis (GenBank accession no. KF769142) was assembled using the PacBio RS platform (Pacific Biosciences, Beverly, MA) as a circle sequence with 151 009 bp. The assembled genome contains 133 genes, including 88 protein-coding, 37 tRNA, and eight rRNA genes. This genome sequence will provide important resource for further studies on the evolution of Fritillaria genus and molecular identification of Fritillaria herbs and their adulterants. This work suggests that PacBio RS is a powerful tool to sequence and assemble chloroplast genomes.

  20. Side effects of Bacillus thuringiensis var. kurstaki on the hymenopterous parasitic wasp Trichogramma chilonis.

    Science.gov (United States)

    Amichot, Marcel; Curty, Christine; Benguettat-Magliano, Olivia; Gallet, Armel; Wajnberg, Eric

    2016-02-01

    Most of the detrimental effects of using conventional insecticides to control crop pests are now well identified and are nowadays major arguments for replacing such compounds by the use of biological control agents. In this respect, the bacterium Bacillus thuringiensis var. kurstaki and Trichogramma (Hymenoptera: Trichogrammatidae) parasitic wasp species are both effective against lepidopterous pests and can actually be used concomitantly. In this work, we studied the potential side effects of B. thuringiensis var. kurstaki on Trichogramma chilonis females. We first evidenced an acute toxicity of B. thuringiensis on T. chilonis. Then, after ingestion of B. thuringiensis at sublethal doses, we focused on life history traits of T. chilonis such as longevity, reproductive success and the time spent on host eggs patches. The reproductive success of T. chilonis was not modified by B. thuringiensis while a significant effect was observed on longevity and the time spent on host eggs patches. The physiological and ecological meanings of the results obtained are discussed.

  1. The model of television in Pedro Almodóvar. Cinema vs. Televisión

    Directory of Open Access Journals (Sweden)

    Agustín GÓMEZ GÓMEZ

    2014-10-01

    Full Text Available In this paper we analyze the TV model presented by Pedro Almodóvar in his filmography. Of the eighteen movies, but three, all contain, one way or another, a reference to TV in a critical sense. Through the analysis of all his films, we observe the way in which TV appears and focus on four models or functions of the TV in his work. The first one has to do with the viewing mode, which we have named “domestic model”. A second function, which we will call “realistic”, is one which means that only what appears on screen exists, but Almodóvar desecrates reality through parody. A third model is a critique of so-called junk televisión. Finally, a fourth function is the presence of other films through the TV screen to establish an intertextual relationship with a narrative purpose.

  2. Isolation of Cryptococcus neoformans var. neoformans from bird droppings, fruits and vegetables in Mexico City.

    Science.gov (United States)

    López-Martínez, R; Castañón-Olivares, L R

    1995-01-01

    The presence of Cryptococcus neoformans in various natural sources, such as bird droppings, fruits and vegetables, was investigated. A total of 711 samples were analyzed; C. neoformans var. neoformans was isolated from seven out of 74 bird droppings (9.5%), with parrots as one of the most significant sources. Fruits were positive in 9.5% of the 169 samples studied, specially citrus fruits, particularly grapefruit, in which the highest frequency was found. From the 468 vegetable samples, only 20 were positive (4.2%). It is emphasized that five of the positive vegetables species are autochthonous to Mexico: avocado (Nectandra salicifolia), beet (Beta vulgaris var. quinopodiace), chayote (Sechium edule), stringbean (Cassia sp), and nopal (Opuntia ficus-indica).

  3. Bootstrap Determination of the Co-Integration Rank in Heteroskedastic VAR Models

    DEFF Research Database (Denmark)

    Cavaliere, Giuseppe; Rahbek, Anders; Taylor, A. M. Robert

    In a recent paper Cavaliere et al. (2012) develop bootstrap implementations of the (pseudo-) likelihood ratio [PLR] co-integration rank test and associated sequential rank determination procedure of Johansen (1996). The bootstrap samples are constructed using the restricted parameter estimates...... the properties of their bootstrap procedures, together with analogous procedures based on a wild bootstrap re-sampling scheme, when time-varying behaviour is present in either the conditional or unconditional variance of the innovations. We show that the bootstrap PLR tests are asymptotically correctly sized and...... of the underlying VAR model which obtain under the reduced rank null hypothesis. They propose methods based on an i.i.d. bootstrap re-sampling scheme and establish the validity of their proposed bootstrap procedures in the context of a co-integrated VAR model with i.i.d. innovations. In this paper we investigate...

  4. Bootstrap Determination of the Co-integration Rank in Heteroskedastic VAR Models

    DEFF Research Database (Denmark)

    Cavaliere, Giuseppe; Rahbek, Anders; Taylor, A.M.Robert

    In a recent paper Cavaliere et al. (2012) develop bootstrap implementations of the (pseudo-) likelihood ratio [PLR] co-integration rank test and associated sequential rank determination procedure of Johansen (1996). The bootstrap samples are constructed using the restricted parameter estimates...... the properties of their bootstrap procedures, together with analogous procedures based on a wild bootstrap re-sampling scheme, when time-varying behaviour is present in either the conditional or unconditional variance of the innovations. We show that the bootstrap PLR tests are asymptotically correctly sized and...... of the underlying VAR model which obtain under the reduced rank null hypothesis. They propose methods based on an i.i.d. bootstrap re-sampling scheme and establish the validity of their proposed bootstrap procedures in the context of a co-integrated VAR model with i.i.d. innovations. In this paper we investigate...

  5. Development and Characterization of 25 EST-SSR markers in Pinus sylvestris var. mongolica (Pinaceae

    Directory of Open Access Journals (Sweden)

    Pan Fang

    2014-01-01

    Full Text Available Premise of the study: A set of novel expressed sequence tag (EST microsatellite markers was developed in Pinus sylvestris var. mongolica to promote further genetic studies in this species. Methods and Results: One hundred seventy-five EST–simple sequence repeat (SSR primers were designed and synthesized for 31,653 isotigs based on P. tabuliformis EST sequences. The primer pairs were used to identify 25 polymorphic loci in 48 individuals. The number of alleles ranged from two to eight with observed and expected heterozygosity values of 0.0435 to 0.8125 and 0.0430 to 0.7820, respectively. Conclusions: These new polymorphic EST-SSR markers will be useful for assessing genetic diversity, molecular breeding and genetic improvement, and conservation of P. sylvestris var. mongolica.

  6. Allelopathy of the invasive plant Bidens frondosa on the seed germination of Geum japonicum var. chinense.

    Science.gov (United States)

    Wang, X F; Hassani, D; Cheng, Z W; Wang, C Y; Wu, J

    2014-12-12

    Five gradient concentrations (0.02, 0.04, 0.06, 0.08, and 0.10 g/mL) of leaching liquors from the roots, stems, and leaves of the invasive plant Bidens frondosa were used as conditioning fluid to examine its influence on seed germination conditions of the native plant Geum japonicum var. chinense in Huangshan. All leaching liquors of organs suppressed the seed germination of Geum japonicum var. chinense and reduced the final germination percentage and rate, and increased the germination inhibition rate, with a bimodal dependence on concentration. The leaching liquor inhibited the seed germination significantly at the concentration of 0.02 g/mL respectively. The seed germination was also inhibited as the concentration reached to 0.04 g/mL and beyond. Hence the allelopathic effects of the organs were significantly enhanced respectively. This phenomenon represented the presence of allelopathy substances in the root, stem and leaf of Bidens frondosa.

  7. Developing methods and strains for genetic studies in the Saccharomyces bayanus var. uvarum species.

    Science.gov (United States)

    Talarek, Nicolas; Louis, Edward J; Cullin, Christophe; Aigle, Michel

    2004-10-30

    For years, Saccharomyces cerevisiae has been used as a model organism to gain insight into complex biological processes. The study of closely related yeast species may be critical for understanding the molecular mechanism of evolution. Among those species, S. bayanus var. uvarum could be particularly pertinent because of the availability of its genome sequence. However, to date, in that species genetic studies are problematical due to the lack of standard strains collection and genetic methods. Here, we have developed heterothallic S. bayanus var. uvarum strains and obtained stable haploid strains. We further used UV-induced mutation and gene disruption to create a collection of auxotrophic derivatives. Finally, we have elaborated or improved methods to cultivate cells, obtain zygotes and spores and to transform this species. All these tools can now be used by the scientific community to study the biology of this species. copyright 2004 John Wiley & Sons, Ltd.

  8. Viral dsRNA in the wine yeast Saccharomyces bayanus var. uvarum.

    Science.gov (United States)

    Ivannikova, Yuliya V; Naumova, Elena S; Naumov, Gennadi I

    2007-01-01

    The presence of viral dsRNA (L and M fractions) in the cryophilic yeast Saccharomyces bayanus var. uvarum is documented here for the first time. Sixty-eight strains of different origins were analyzed. Most of them did not carry dsRNA; the L fraction was found in seven strains, while 11 strains had both L and M fractions. The size of the L fraction was invariable (4.5 kb), as in the cultured yeast Saccharomyces cerevisiae. In contrast to L-dsRNA, the M fraction varied in size from ca. 1.2 to 1.8 kb. In total, seven different M-dsRNA types were recognized (M1-M3 and M8-M11), predominantly among French wine strains of S. bayanus var. uvarum. Phenotypic analysis revealed that the M-dsRNAs found were cryptic and may represent mutant forms of killer plasmids.

  9. Musa itinerans var. chiumei (Musaceae, A New Addition to the Taiwan Flora

    Directory of Open Access Journals (Sweden)

    Hui-Lung Chiu

    2015-09-01

    Full Text Available Another new variety of Musa itinerans Cheesman in Taiwan is described. The morphological characteristics of the variety are otherwise similar to those of var. formosana (Warb. ex Schum. Häkkinen & C.-L.Yeh. The principal distinction is based on the length and bending of inflorescence, and the compactness of fruit hands. The inflorescence rachis of the new variety is longer than the other two varieties, and first upwardly slanting, then curving downwards, finally pendent in the male flower regions. The fruit hands grow very compactly and apex of fruit remains distinguished floral relicts. These characteristics are stable at their habitat and Taiwan Agricultural Research Institute (TARI repository over study periods. This population is herein segregated as the new variety, M. itinerans var. chiumei H.-L. Chiu, C.-T. Shii & T.-Y.A. Yang. Photos for the varietal taxon as well as the key to all variation of Musa itinerans and Taiwanese wild bananas are provided.

  10. El cine en el cine: Los abrazos rotos (Pedro Almodóvar, 2009

    Directory of Open Access Journals (Sweden)

    Pedro Poyato

    2012-10-01

    Full Text Available El cine en el cine, tema recurrente en la filmografía de Pedro Almodóvar, protagoniza también Los abrazos rotos, película que contiene en su interior otra titulada Chicas y maletas. Pero las imágenes de esta segunda película, trasunto de otra anterior del propio Almodóvar, Mujeres al borde un ataque de nervios, coexisten con las de un documental sobre su rodaje. El resultado es una proliferación de imágenes segundas que, incorporadas según una estructura en abismo, el filme va a conjugar de múltiples y variadas maneras. El presente trabajo trata de dar cuenta de la génesis, funcionamiento y declinación de estas imágenes segundas y de los sentidos que de ello emanan.

  11. Apoptosis of HL-60 cells induced by extracts from Narcissus tazetta var. chinensis.

    Science.gov (United States)

    Liu, Jing; Li, Yan; Ren, Wei; Hu, Wei-Xin

    2006-10-08

    Narcissus tazetta var. chinensis is one member of the Amaryllidaceae family. We found that extracts from N. tazetta var. chinensis (ENT) strongly decreased the survival rate of the following tumor cell lines: HL-60, K562, KT1/A3, and A3R. The cytotoxic effects of ENT on non-cancer cells lines (NHBE and NIH3T3) were smaller than on leukemia cell lines. AO/EB staining and flow cytometry assays showed that ENT induced HL-60 cell apoptosis. Furthermore, the release of cytochrome c and the increase of caspase-8, -9, and -3 activities were tested after HL-60 cells were treated with ENT, which indicated that the mitochondrial pathway and cell death receptor pathway were both involved in the apoptosis signal pathways induced by ENT. Upregulation of Bax showed that the Bcl-2 family was involved in the control of apoptosis. Our results suggest that apoptosis activity can be mediated by ENT in HL-60 cells.

  12. Interspecific hybridization, polyploidization, and backcross of Brassica oleracea var. alboglabra with B. rapa var. purpurea morphologically recapitulate the evolution of Brassica vegetables.

    Science.gov (United States)

    Zhang, Xiaohui; Liu, Tongjin; Li, Xixiang; Duan, Mengmeng; Wang, Jinglei; Qiu, Yang; Wang, Haiping; Song, Jiangping; Shen, Di

    2016-01-04

    Brassica oleracea and B. rapa are two important vegetable crops. Both are composed of dozens of subspecies encompassing hundreds of varieties and cultivars. Synthetic B. napus with these two plants has been used extensively as a research model for the investigation of allopolyploid evolution. However, the mechanism underlying the explosive evolution of hundreds of varieties of B. oleracea and B. rapa within a short period is poorly understood. In the present study, interspecific hybridization between B. oleracea var. alboglabra and B. rapa var. purpurea was performed. The backcross progeny displayed extensive morphological variation, including some individuals that phenocopied subspecies other than their progenitors. Numerous interesting novel phenotypes and mutants were identified among the backcross progeny. The chromosomal recombination between the A and C genomes and the chromosomal asymmetric segregation were revealed using Simple Sequence Repeats (SSR) markers. These findings provide direct evidence in support of the hypothesis that interspecific hybridization and backcrossing have played roles in the evolution of the vast variety of vegetables among these species and suggest that combination of interspecific hybridization and backcrossing may facilitate the development of new mutants and novel phenotypes for both basic research and the breeding of new vegetable crops.

  13. Interspecific hybridization, polyploidization, and backcross of Brassica oleracea var. alboglabra with B. rapa var. purpurea morphologically recapitulate the evolution of Brassica vegetables

    Science.gov (United States)

    Zhang, Xiaohui; Liu, Tongjin; Li, Xixiang; Duan, Mengmeng; Wang, Jinglei; Qiu, Yang; Wang, Haiping; Song, Jiangping; Shen, Di

    2016-01-01

    Brassica oleracea and B. rapa are two important vegetable crops. Both are composed of dozens of subspecies encompassing hundreds of varieties and cultivars. Synthetic B. napus with these two plants has been used extensively as a research model for the investigation of allopolyploid evolution. However, the mechanism underlying the explosive evolution of hundreds of varieties of B. oleracea and B. rapa within a short period is poorly understood. In the present study, interspecific hybridization between B. oleracea var. alboglabra and B. rapa var. purpurea was performed. The backcross progeny displayed extensive morphological variation, including some individuals that phenocopied subspecies other than their progenitors. Numerous interesting novel phenotypes and mutants were identified among the backcross progeny. The chromosomal recombination between the A and C genomes and the chromosomal asymmetric segregation were revealed using Simple Sequence Repeats (SSR) markers. These findings provide direct evidence in support of the hypothesis that interspecific hybridization and backcrossing have played roles in the evolution of the vast variety of vegetables among these species and suggest that combination of interspecific hybridization and backcrossing may facilitate the development of new mutants and novel phenotypes for both basic research and the breeding of new vegetable crops. PMID:26727246

  14. Mutations in the Arabidopsis AtMRS2-11/AtMGT10/VAR5 Gene Cause Leaf Reticulation

    Directory of Open Access Journals (Sweden)

    Shuang Liang

    2017-11-01

    Full Text Available In higher plants, the development of functional chloroplasts is essential for photosynthesis and many other physiological processes. With a long-term goal of elucidating the genetic regulation of chloroplast development, we identified two allelic leaf variegation mutants, variegated5-1 (var5-1 and var5-2. Both mutants showed a distinct leaf reticulation phenotype of yellow paraveinal regions and green interveinal regions, and the leaf reticulation phenotype correlated with photosynthetic defects. Through the identification of mutation sites in the two mutant alleles and the molecular complementation, we confirmed that VAR5 encodes a CorA family of Mg2+ transporters also known as AtMRS2-11/AtMGT10. Using protoplast transient expression and biochemical fractionation assays, we demonstrated that AtMRS2-11/AtMGT10/VAR5 likely localizes to the chloroplast envelope. Moreover, we established that AtMRS2-11/AtMGT10/VAR5 forms large molecular weight complexes in the chloroplast and the sizes of these complexes clearly exceed those of their bacterial counterparts, suggesting the compositions of CorA Mg2+ transporter complex is different between the chloroplast and bacteria. Our findings indicate that AtMRS2-11/AtMGT10/VAR5 plays an important role in the tissue specific regulation of chloroplast development.

  15. De novo assembly and analysis of the transcriptome of Ocimum americanum var. pilosum under cold stress.

    Science.gov (United States)

    Zhan, Xiangqiang; Yang, Lan; Wang, Dong; Zhu, Jian Kang; Lang, Zhaobo

    2016-03-09

    Ocimum americanum var. pilosum is a chilling-sensitive, widely distributed plant that is consumed as a vegetable in central and southern China. To increase our understanding of cold stress responses in this species, we performed de novo transcriptome assembly for O. americanum var. pilosum and compared the transcriptomes of plants grown under normal and low temperatures. A total of 115,022,842 high quality, clean reads were obtained from four libraries (two replicates of control samples and two replicates of chilling-treated samples) and were used to perform de novo transcriptome assembly. After isoforms were considered, 42,816 unigenes were generated, 30,748 of which were similar to known proteins as determined by a BLASTx search (E-value stress, respectively. Expression of the 10 most up-regulated and the five most down-regulated unigenes was validated by qRT-PCR. To increase our understanding of these differentially expressed unigenes, we performed Gene ontology and KEGG pathway enrichment analyses. The CBF-mediated transcriptional cascade, a well-known cold tolerance pathway, was reconstructed using our de novo assembled transcriptome. Our study has generated a genome-wide transcript profile of O. americanum var. pilosum and a de novo assembled transcriptome, which can be used to characterize genes related to diverse biological processes. This is the first study to assess the cold-responsive transcriptome in an Ocimum species. Our results suggest that cold temperature significantly affects genes related to protein translation and cellular metabolism in this chilling sensitive species. Although most of the CBF pathway genes have orthologs in O. americanum var. pilosum, none of the identified cold responsive (COR) gene orthologs was induced by cold, which is consistent with the lack of cold tolerance in this plant.

  16. Optimization of Agave tequilana Weber var. Azul Juice Spray Drying Process

    OpenAIRE

    Alejandra Chávez-Rodríguez; Irma G. López-Muraira; Juan F. Goméz-Leyva; Guadalupe Luna-Solano; Rosa I. Ortíz-Basurto; Isaac Andrade-González

    2014-01-01

    In this work, the response surface methodology was employed to optimize the microencapsulation of Agave tequilana Weber var. azul juice with whey protein isolated using a spray drying technique. A Box-Behnken design was used to establish optimum spray drying conditions for Agave tequilana juice. The process was optimized to obtain maximum powder yield with the best solubility time, hygroscopicity, bulk density, water activity, and reducing sugars. The independent parameters for the spray dryi...

  17. Growth and N2 fixation in an Alnus hirsuta (Turcz.) var. sibirica stand ...

    Indian Academy of Sciences (India)

    2013-10-01

    Oct 1, 2013 ... to the 66.4% of N in the leaf litter produced in a year. These results suggested that N2 fixation still contributed to the large portion of N economy in this alder stand. [Tobita H, Hasegawa SF, Yazaki K, Komatsu M and Kitao M 2013 Growth and N2 fixation in an Alnus hirsuta (Turcz.) var. sibirica stand in Japan.

  18. Indoleacetic acid derivatives from the seeds of Ziziphus jujuba var. spinosa.

    Science.gov (United States)

    Li, Min; Wang, Yu; Tsoi, Bun; Jin, Xiao-jie; He, Rong-Rong; Yao, Xiao-jun; Dai, Yi; Kurihara, Hiroshi; Yao, Xin-Sheng

    2014-12-01

    A pair of diastereoisomers, the N-glycosylated derivatives of dioxindole-3-hydroxy-3-acetic acid 1-2, and their conjugates with flavonoids 3-8, was isolated from the seeds of Ziziphus jujuba var. spinosa. Their structures were elucidated by NMR spectroscopic analyses, and the absolute configurations were determined by circular dichroism method. Compounds 3-10 were evaluated for the antioxidant capacity, using the radical absorbance capacity (ORAC) assay. Copyright © 2014 Elsevier B.V. All rights reserved.

  19. [Flavone C-glycosides from seeds of Ziziphus jujuba var. spinosa].

    Science.gov (United States)

    Chen, Ke-xian; Zhao, Li-mei; Ji, Chang-jiu; Tan, Ning-hua

    2015-04-01

    Five flavone C-glycosides were isolated from the methanol extract of the degrease seeds of Ziziphus jujuba var. spinosa though various column chromatography methods including silica gel, MPLC, and HPLC. The structures were elucidated as 6"-feruloyl- 6'''-vanillylspinosin(1), 6",6'"-diferuloylspinosin(2), spinosin(3), swertisin(4) and isoswertisin(5) based on the NMR and MS spectral data. 1 is a new compound.

  20. tmVar: a text mining approach for extracting sequence variants in biomedical literature.

    Science.gov (United States)

    Wei, Chih-Hsuan; Harris, Bethany R; Kao, Hung-Yu; Lu, Zhiyong

    2013-06-01

    Text-mining mutation information from the literature becomes a critical part of the bioinformatics approach for the analysis and interpretation of sequence variations in complex diseases in the post-genomic era. It has also been used for assisting the creation of disease-related mutation databases. Most of existing approaches are rule-based and focus on limited types of sequence variations, such as protein point mutations. Thus, extending their extraction scope requires significant manual efforts in examining new instances and developing corresponding rules. As such, new automatic approaches are greatly needed for extracting different kinds of mutations with high accuracy. Here, we report tmVar, a text-mining approach based on conditional random field (CRF) for extracting a wide range of sequence variants described at protein, DNA and RNA levels according to a standard nomenclature developed by the Human Genome Variation Society. By doing so, we cover several important types of mutations that were not considered in past studies. Using a novel CRF label model and feature set, our method achieves higher performance than a state-of-the-art method on both our corpus (91.4 versus 78.1% in F-measure) and their own gold standard (93.9 versus 89.4% in F-measure). These results suggest that tmVar is a high-performance method for mutation extraction from biomedical literature. tmVar software and its corpus of 500 manually curated abstracts are available for download at http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/pub/tmVar

  1. Efek Antijamur Minyak Atsiri Jahe Putih Kecil (Zingiber officinale var. Amarum terhadap Candida Albicans

    Directory of Open Access Journals (Sweden)

    Huanny Satriyani

    2015-10-01

    Full Text Available The side effects of many antifungal drugs make it necessary to find an herbal alternative with reduced side effects. Many herbals are knwon to have an antifungal effect, including ginger with its volatile oil composition. However, the specific antifungal effect and optimal concentration of the volatile oil from Zingiber officinale var. amarum against C. albicans is not yet known. This research was done to verify the antifungal effect of Zingiber officinale var. amarum volatile oil on C. albicans, to determine its optimal concentration, and to determine the relation between the volatile oil was provided by water and steam distillation of BALITTRO, Bogor. The colonies were double counted in two steps. First, the volatile oil at concentrations of 100%, 50%, 25%, 12.5%, 6.25%, 3.125%, 1.56% and 0.78% were applied for treatment, wheras in the second step concentrations of 100%, 90%, 80%, 70%, 60%, and 50% were used. In the disk diffusion method, the volatile oil concentrations of 100%, 70%, 60%, 50%, 25%, 12.5%, 6.25% and 3.125% were applied in triplicate in Petri dishes containing C. albicans by using 6 mm blank disks. Result: Mann-Whitney test showed the significant decrease of the colonies between 6.25% and 3.125% of the volatile oil concentration (α = 0.021, and also between the volatile oil concentration 6.25% and the control group (α = 0.014. The Spearman test showed a positive and strong correlation between the volatile oil of Zingiber officinale var. amarum and its inhibition zone (r = 0.91. Conclusion: The volatile oil of Zingiber officinale var. amarum has an antifungal effect against C. albicans with an optimal concentration of 6.25%, and increasing volatile oil concentration is followed by increasing inhibition zone.

  2. A VAR2CSA:CSP conjugate capable of inducing dual specificity ...

    African Journals Online (AJOL)

    tein with many cysteines forming disulfide bonds and it would require extensive experimental effort to produce ... Design, expression and purification of VAR2C-. SA-SpyTag antigen. The DBL1x-DBL2x-ID2a region of ... Sequences coding a hexa-histidine purification tag was added at the 5 prime end of a construct coding a ...

  3. The effects of priming on vigor and viability of broccoli (Brassica oleracea var. italica Plenck) seeds

    OpenAIRE

    Jett, Lewis W.

    1994-01-01

    Seed priming is a controlled hydration process, followed by dehydration, that allows pregerminative metabolic activity to proceed without germination. The objective of this research was to investigate the effects of priming on intrinsic characteristics of seed germination including temperature, water, and development, in order to understand how priming affects the germination of broccoli (Brassica oleracea var. italica Plenck) seeds. Priming of broccoli seeds consistently impro...

  4. Oil Price Shocks and Macroeconomic Activities in Asean-5 Countries: A Panel VAR Approach

    OpenAIRE

    AZIZ, Mukhriz Izraf Azman; Dahalan, Jauhari

    2015-01-01

    The paper investigates the asymmetric effects of oil price shocks on real economic activities in ASEAN-5 from 1991 to 2014 using an unrestricted panel Vector Auto Regressive (VAR) method. Results from the impulse response function (IRFs) show evidence of an asymmetric relationship between oil prices and economic activities. Specifically, positive oil price shock measures negatively affect output growth both in the short term and in the long term. For oil price decrease specific...

  5. [Electron microscope study of "Bacillus thuringiensis" var. "Israelensis" sporulation and crystal biogenesis (author's transl)].

    Science.gov (United States)

    Charles, J F; de Barjac, H

    1982-01-01

    The sporulation and crystal development of Bacillus thuringiensis serotype H-14 was described for a wild spore- and crystal-forming strain and for a mutant crystal but non spore-forming strain. The special nature of the israelensis var. consisted in the composite structure of the crystal, made of a number of components differing in size, shape and electron density. The components were formed in a single inclusion or sometimes separately inside the same bacterial cell.

  6. Influencia de la betarraga (Beta vulgaris var. cruenta en el aumento de leucocitos, en ratones

    Directory of Open Access Journals (Sweden)

    Jony Amaro

    2014-01-01

    Full Text Available Introducción: La betarraga es una planta oriunda del Mediterráneo utilizada para fines alimenticios y medicinales. Contiene flavonoides. Objetivos: Determinar la influencia del consumo del extracto de Beta vulgaris var. cruenta en el incremento de leucocitos, en el ratón albino. Diseño: Estudio experimental. Lugar: Bioterio de la Institución Educativa 1182. Material biológico: Veinte ratones albinos de la cepa balb/c, machos, de peso promedio 24 g. Intervenciones: Se formó dos grupos, experimental y control, cada uno de diez ratones. Al grupo experimental se le administró vía oral extracto de Beta vulgaris var. cruenta en dosis de 250 mg/kg, volumen de 2 mL, cada cinco horas durante una semana, alternando con nutrientes, y al grupo control solo se le administró nutrientes. Principales medidas de resultados: Recuento de leucocitos. Resultados: Dentro del periodo de acondicionamiento, se observó un ligero incremento en la media de leucocitos del grupo control (3 681 ± 431,1 frente al grupo experimental (3 579 ± 473,5, cuya diferencia no fue significativa. Luego de administrar al grupo experimental el extracto de Beta vulgaris var. cruenta, alternando con sus nutrientes respectivos, se observó diferencia significativa de la media (7 961 ± 275,4 frente al grupo control (3 693 ± 414,7 (t student p<0,05. Conclusiones: En condiciones experimentales, el consumo del extracto de Beta vulgaris var. cruenta incrementó significativamente el número de leucocitos.

  7. Colorless Chlorophyll Catabolites in Senescent Florets of Broccoli (Brassica oleracea var. italica)

    OpenAIRE

    Roiser, Matthias H.; M?ller, Thomas; Kr?utler, Bernhard

    2015-01-01

    Typical postharvest storage of broccoli (Brassica oleracea var. italica) causes degreening of this common vegetable with visible loss of chlorophyll (Chl). As shown here, colorless Chl-catabolites are generated. In fresh extracts of degreening florets of broccoli, three colorless tetrapyrrolic Chl-catabolites accumulated and were detected by high performance liquid chromatography (HPLC): two ?nonfluorescent? Chl-catabolites (NCCs), provisionally named Bo-NCC-1 and Bo-NCC-2, and a colorless 1,...

  8. A clarified position for Solanum lycopersicum var. cerasiforme in the evolutionary history of tomatoes (solanaceae).

    Science.gov (United States)

    Ranc, Nicolas; Muños, Stéphane; Santoni, Sylvain; Causse, Mathilde

    2008-12-20

    The natural phenotypic variability present in the germplasm of cultivated plants can be linked to molecular polymorphisms using association genetics. However it is necessary to consider the genetic structure of the germplasm used to avoid false association. The knowledge of genetic structure of plant populations can help in inferring plant evolutionary history. In this context, we genotyped 360 wild, feral and cultivated accessions with 20 simple sequence repeat markers and investigated the extent and structure of the genetic variation. The study focused on the red fruited tomato clade involved in the domestication of tomato and confirmed the admixture status of cherry tomatoes (Solanum lycopersicum var. cerasiforme). We used a nested sample strategy to set-up core collection maximizing the genetic diversity with a minimum of individuals. Molecular diversity was considerably lower in S. lycopersicum i.e. the domesticated form. Model-based analysis showed that the 144 S. lycopersicum var. cerasiforme accessions were structured into two groups: one close to the domesticated group and one resulting from the admixture of the S. lycopersicum and S. pimpinellifolium genomes. SSR genotyping also indicates that domesticated and wild tomatoes have evolved as a species complex with intensive level of hybridization. We compiled genotypic and phenotypic data to identify sub-samples of 8, 24, 32 and 64 cherry tomato accessions that captured most of the genetic and morphological diversity present in the entire S. lycopersicum var. cerasiforme collection. The extent and structure of allelic variation is discussed in relation to historical events like domestication and modern selection. The potential use of the admixed group of S. lycopersicum var. cerasiforme for association genetics studies is also discussed. Nested core collections sampled to represent tomato diversity will be useful in diversity studies. Molecular and phenotypic variability of these core collections is defined

  9. The taxonomic identity of Heliconius melpomene f. pyritosa var. fumigata Zikán (Lepidoptera: Nymphalidae

    Directory of Open Access Journals (Sweden)

    André Victor Lucci Freitas

    2015-06-01

    Full Text Available The taxonomic identity of the butterfly Heliconius melpomene f. pyritosa var. fumigata Zikán, 1937 (Nymphalidae: Heliconiinae is discussed based on the discovery of the specimen based on which this name was assigned. The specimen is not a variation of Eueides tales surdus Stichel, 1903, as previously stated, but is in fact a variation of H. melpomene f. pyritosa, which is a synonym of Heliconius erato amalfreda Riffarth, 1901.

  10. Production of a new pyridine N-oxide by bioconversion with Cunninghamella echinulata var. elegans.

    Science.gov (United States)

    Zeng, Jia; Gage, David; Zhan, Jixun

    2012-11-01

    A new N-oxide was produced from 3-(N-Boc-aminomethyl)-5-bromopyridine by bioconversion with Cunninghamella echinulata var. elegans ATCC 9245, and its structure was established based on the spectral data. The microbial N-oxidation is efficient and highly selective. The substrate was transformed into the product in 7 days. Copyright © 2012 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

  11. BEHAVIORAL EVIDENCE OF ANTIDEPRESSANT-LIKE ACTIVITY OF RAPHANUS SATIVUS L. VAR. CAUDATUS IN MICE

    OpenAIRE

    Younus, Ishrat; Siddiq, and Afshan

    2017-01-01

    Background: Currently-available antidepressant agents produce various adverse effects, and are expensive. At present, various plants are being evaluated for their possible role against numerous diseases, and no doubt, the role of traditional and complementary medicines in the development of effective therapy is incredible. The present study was designed to evaluate antidepressant-like activity of Raphanus sativus L. Var. caudatus at different doses in mice. Materials and Methods: Antidepressa...

  12. EL CARIOTIPO DE ANADENANTHERA COLUBRINA VAR. CEBIL y DE PARAPIPTADENIA RIGIDA (LEGUMINOSAE-MIMOSOIDEAE)

    OpenAIRE

    Ana I. Honfi; Julio R Daviña

    1997-01-01

    Los cromosomas somáticos de dos especies de árboles han sido estudiados, ambos tienen 2n = 26. Los cariotipos de Anadenanthera colubrina (Vell.) Brenan var. cebil (Griseb.) Altschul (18m + 8sm) y Parapiptadenia rigida (Benth.) Brenan (12m + 14sm) se describen tor primera vez. Estas especies se distinguen por la fórmula de cariotipo y la longitud total del cariotipo.

  13. EL CARIOTIPO DE ANADENANTHERA COLUBRINA VAR. CEBIL y DE PARAPIPTADENIA RIGIDA (LEGUMINOSAE-MIMOSOIDEAE

    Directory of Open Access Journals (Sweden)

    Ana I. Honfi

    1997-01-01

    Full Text Available Los cromosomas somáticos de dos especies de árboles han sido estudiados, ambos tienen 2n = 26. Los cariotipos de Anadenanthera colubrina (Vell. Brenan var. cebil (Griseb. Altschul (18m + 8sm y Parapiptadenia rigida (Benth. Brenan (12m + 14sm se describen tor primera vez. Estas especies se distinguen por la fórmula de cariotipo y la longitud total del cariotipo.

  14. Performance of static var compensator control type thyristor controlled reactor and thyristor switched capacitor

    Energy Technology Data Exchange (ETDEWEB)

    Araujo, Josias M. de; Yung, Chou Shaw; Rose, Eber H.; Pantoja, Antonio L.A. [ELETRONORTE, Belem, PA (Brazil); Fouesnant, Thomas; Boissier, Luc

    1994-12-31

    This paper has the objective of presenting the philosophy of Static Var Compensator (SVC) Control as well the necessary adjustments in the project of control system to guarantee suitable performance under different operating conditions. The verification on the performance of the SVC control has been done by Transient Network Analyzer (TNA/CEPEL) studies, commissioning tests and a factory tests. The SVC is the type of Thyristor Controlled Reactor (TCR) and Thyristor Switched Capacitor (TSC). (author) 3 refs., 12 figs.

  15. Prevalence of Sarcoptes scabiei var. suis infestation in pigs of Meghalaya and its treatment

    Directory of Open Access Journals (Sweden)

    R. Laha

    2014-12-01

    Full Text Available Aim: The aim was to study the prevalence of Sarcoptes scabiei var. suis infestation in pigs of Meghalaya and to treat the infested pigs with the chemotherapeutic agent. Materials and Methods: A total of 196 numbers of pigs were suspected for Sarcoptes scabiei var. suis infestation maintained in both organized and unorganized pig farms as well as pigs brought for slaughter to pig slaughterhouses of Meghalaya. Deep skin scrapings were collected from all these 196 numbers of pigs. The collected scrapings were digested in 10% potassium hydroxide separately and centrifuged. The sediment portions were examined under both low and high power of the microscope to find any mite. Except the infested pigs that were brought for slaughter, all other infested pigs were treated with ivermectin @ 300 μg/kg body weight (b.wt subcutaneously. Results: Of 196 numbers of suspected pigs, 21 (10.71% numbers of pigs were found infested with Sarcoptes scabiei var. suis after microscopical examination of skin scrapings. Except the infested pigs that were brought for slaughter, all other infested pigs were treated successfully with ivermectin @ 300 μg/kg b.wt subcutaneously. Conclusion: It can be concluded from the present study that sarcoptic mange caused by Sarcoptes scabiei var. suis is very much prevalent in pigs whether maintained in organized farms, as well as pigs maintained in unorganized way in village conditions. Pig owners should not neglect this infestation as it has economic significance. Ivermectin @ 300 μg/kg b.wt subcutaneously has been found to be effective to treat this infestation.

  16. 1D-Var temperature retrievals from microwave radiometer and convective scale model

    Directory of Open Access Journals (Sweden)

    Pauline Martinet

    2015-12-01

    Full Text Available This paper studies the potential of ground-based microwave radiometers (MWR for providing accurate temperature retrievals by combining convective scale numerical models and brightness temperatures (BTs. A one-dimensional variational (1D-Var retrieval technique has been tested to optimally combine MWR and 3-h forecasts from the French convective scale model AROME. A microwave profiler HATPRO (Humidity and Temperature PROfiler was operated during 6 months at the meteorological station of Bordeaux (Météo France. MWR BTs were monitored against simulations from the Atmospheric Radiative Transfer Simulator 2 radiative transfer model. An overall good agreement was found between observations and simulations for opaque V-band channels but large errors were observed for channels the most affected by liquid water and water vapour emissions (51.26 and 52.28 GHz. 1D-Var temperature retrievals are performed in clear-sky and cloudy conditions using a screening procedure based on cloud base height retrieval from ceilometer observations, infrared radiometer temperature and liquid water path derived from the MWR observations. The 1D-Var retrievals were found to improve the AROME forecasts up to 2 km with a maximum gain of approximately 50 % in root-mean-square-errors (RMSE below 500 m. They were also found to outperform neural network retrievals. A static bias correction was proposed to account for systematic instrumental errors. This correction was found to have a negligible impact on the 1D-Var retrievals. The use of low elevation angles improves the retrievals up to 12 % in RMSE in cloudy-sky in the first layers. The present implementation achieved a RMSE with respect to radiosondes within 1 K in clear-sky and 1.3 K in cloudy-sky conditions for temperature.

  17. Biologically active constituents of leaves and roots of Aloe arborescens var. natalensis.

    Science.gov (United States)

    Hirata, T; Suga, T

    1977-01-01

    Several biologically active substances, such as aloenin (1), magnesium lactate, aloe-emodin (4), barbaloin (5), and succinic acid, were found to be contained in the leaf juice of Aloe arborescens Mill. var. natalensis Berger, which has widely been used in domestic medicines. Aloenin (1) and magnesium lactate were elucidated to exhibit an inhibitory action on the gastric juice secretion of rats. Various constituents other than the above bioactive substances were found in the leaves and the roots of the plant.

  18. Carotamine, a Unique Aromatic Amide from Daucus Carota L. Var Biossieri (Apiaceae

    Directory of Open Access Journals (Sweden)

    Mohamed M. El-Azizi

    2002-06-01

    Full Text Available The unique aromatic peptide 4-(p-aminobenzoylamino-2-aminobenzoic acid, carotamine, together with 2,4-diaminobenzoic acid, isolated for the first time from a plant source, were identified from the aqueous alcoholic extract of the aerial parts of Daucus carota L. var. boissieri (Apiaceae. The structures were determined through conventional methods of analysis and confirmed by LC-ESI/MS and NMR spectral analysis.

  19. Influence of Pericarp, Cotyledon and Inhibitory Substances on Sharp Tooth Oak (Quercus aliena var. acuteserrata) Germination

    OpenAIRE

    Yan Liu; Guangquan Liu; Qingmei Li; Yong Liu; Longyu Hou; Guolei Li

    2012-01-01

    In order to explore the mechanism of delayed and uneven germination in sharp tooth oak (Quercus aliena var. acuteserrata) (STO), mechanical scarification techniques were used to study STO root and shoot germination and growth. The techniques used were: removing cup scar (RS), removing the pericarp (RP), and cutting off 1/2 (HC) and 2/3 (TC) cotyledons. Germination percentage and root and shoot length for Chinese cabbage (Beassica pekinensis) seeds (CCS) were also investigated for CCS cultivat...

  20. Physiological Characterization and Comparative Transcriptome Analysis of White and Green Leaves of Ananas comosus var. bracteatus.

    Directory of Open Access Journals (Sweden)

    Xia Li

    Full Text Available Leaf coloration is one of the most important and attractive characteristics of Ananas comosus var. bracteatus. The chimeric character is not stable during the in vitro tissue culturing. Many regenerated plants lost economic values for the loss of the chimeric character of leaves. In order to reveal the molecular mechanisms involved in the albino phenotype of the leaf cells, the physiological and transcriptional differences between complete white (CWh and green (CGr leaf cells of A. comosus var. bracteatus were analyzed. A total of 1,431 differentially expressed unigenes (DEGs in CGr and CWh leaves were identified using RNA-seq. A comparison to the COG, GO and KEGG annotations revealed DEGs involved in chlorophyll biosynthesis, chloroplast development and photosynthesis. Furthermore, the measurement of main precursors of chlorophyll in the CWh leaves confirmed that the rate-limiting step in chlorophyll biosynthesis, and thus the cause of the albino phenotype of the white cells, was the conversion of pyrrole porphobilinogen (PBG to uroporphyrinogen III (Uro III. The enzyme activity of porphobilinogen deaminase (PBGD and uroporporphyrinogn III synthase (UROS, which catalyze the transition of PBG to Uro III, was significantly decreased in the CWh leaves. Our data showed the transcriptional differences between the CWh and CGr plants and characterized key steps in chlorophyll biosynthesis of the CWh leaves. These results contribute to our understanding of the mechanisms and regulation of pigment biosynthesis in the CWh leaf cells of A. comosus var. bracteatus.

  1. Un cortometraje «a lo Almodóvar»

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    Elena Pascual Aliaga

    2015-10-01

    Full Text Available Este artículo contiene la explicación de la unidad didáctica «Un cortometraje a lo Almodóvar», dirigida a alumnos de nivel C1-C2 (MCER. El objetivo general de la unidad es que los alumnos, a través del cine de Pedro Almodóvar, trabajen diferentes contenidos (como el conocimiento y reproducción de los rasgos del habla coloquial y reflexionen sobre los estereotipos de la sociedad española. La unidad plantea una metodología por tareas e incluye propuestas de trabajo cooperativo. El cine de Almodóvar es el engranaje que une las diferentes tareas y conduce a una tarea final, entendida como la creación de un conjunto de productos: un guión cinematográfico, un cortometraje, un tráiler, un cartel y una presentación oral. Todo ello se plantea mediante la integración de recursos TIC en las tareas (Hot Potatoes, Educaplay, Glogster y Windows Movie Maker y mediante el uso de una wiki, que constituye la base del aprendizaje cooperativo.

  2. Release and dispersal of basidiospores from Amanita muscaria var. alba and their infiltration into a residence.

    Science.gov (United States)

    Li, De-Wei

    2005-11-01

    Release and dispersal of basidiospores of Amanita muscaria var. alba and their potential to infiltrate a nearby residence were investigated. Basidiospore release mainly occurred in the first three days following the expansion of the caps. The concentrations of released basidiospores near basidiomata were 77 137, 75 062, and 41 738 spores m(-3) in the first three days, respectively, with the highest concentration at 281 738 spores m(-3) air. After three days, the concentration dropped by 95%. At the second location, airborne basidiospore concentrations dropped 96-99% after three days with the concentrations of 940, 575, and 1359 spores m(-3) in the first three days, respectively. The diurnal pattern showed a relatively extended night peak. Relative humidity and dew were positively correlated with basidiospore release and short distance dispersal. Rain and rain rate were positively correlated with basidiospore release, but not correlated with short distance dispersal. The basidiospore release period of Amanita muscaria var. alba was short, but within such a period it released a large amount of basidiospores. However, only less than 5% of basidiospores released were dispersed to the second location 5.2 m away and 2.7 m above the basidiomata. Only Amanita muscaria var. alba showed a low potential of infiltrating the residence.

  3. Trypsin inhibitors from Capsicum baccatum var. pendulum leaves involved in Pepper yellow mosaic virus resistance.

    Science.gov (United States)

    Moulin, M M; Rodrigues, R; Ribeiro, S F F; Gonçalves, L S A; Bento, C S; Sudré, C P; Vasconcelos, I M; Gomes, V M

    2014-11-07

    Several plant organs contain proteinase inhibitors, which are produced during normal plant development or are induced upon pathogen attack to suppress the enzymatic activity of phytopathogenic microorganisms. In this study, we examined the presence of proteinase inhibitors, specifically trypsin inhibitors, in the leaf extract of Capsicum baccatum var. pendulum inoculated with PepYMV (Pepper yellow mosaic virus). Leaf extract from plants with the accession number UENF 1624, which is resistant to PepYMV, was collected at 7 different times (0, 24, 48, 72, 96, 120, and 144 h). Seedlings inoculated with PepYMV and control seedlings were grown in a growth chamber. Protein extract from leaf samples was partially purified by reversed-phase chromatography using a C2/C18 column. Residual trypsin activity was assayed to detect inhibitors followed by Tricine-SDS-PAGE analysis to determine the N-terminal peptide sequence. Based on trypsin inhibitor assays, trypsin inhibitors are likely constitutively synthesized in C. baccatum var. pendulum leaf tissue. These inhibitors are likely a defense mechanism for the C. baccatum var. pendulum- PepYMV pathosystem.

  4. Construction of a reference molecular linkage map of globe artichoke (Cynara cardunculus var. scolymus).

    Science.gov (United States)

    Portis, E; Mauromicale, G; Mauro, R; Acquadro, A; Scaglione, D; Lanteri, S

    2009-12-01

    The genome organization of globe artichoke (Cynara cardunculus var. scolymus), unlike other species belonging to Asteraceae (=Compositae) family (i.e. sunflower, lettuce and chicory), remains largely unexplored. The species is highly heterozygous and suffers marked inbreeding depression when forced to self-fertilize. Thus a two-way pseudo-testcross represents the optimal strategy for linkage analysis. Here, we report linkage maps based on the progeny of a cross between globe artichoke (C. cardunculus var. scolymus) and cultivated cardoon (C. cardunculus var. altilis). The population was genotyped using a variety of PCR-based marker platforms, resulting in the identification of 708 testcross markers suitable for map construction. The male map consisted of 177 loci arranged in 17 major linkage groups, spanning 1,015.5 cM, while female map was built with 326 loci arranged into 20 major linkage groups, spanning 1,486.8 cM. The presence of 84 loci shared between these maps and those previously developed from a cross within globe artichoke allowed for map alignment and the definition of 17 homologous linkage groups, corresponding to the haploid number of the species. This will provide a favourable property for QTL scanning; furthermore, as 25 mapped markers (8%) correspond to coding regions, it has an additional value as functional map and might represent an important genetic tool for candidate gene studies in globe artichoke.

  5. Technology of VAr Compensators for Induction Generator Applications in Wind Energy Conversion Systems

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    A. F. Zobaa

    2006-09-01

    Full Text Available Many of today utility interconnected wind farms use induction generator (IG to convert the captured wind mechanical power into electricity. Induction generator has some advantages over the synchronous generator (SG. The main advantages are its robustness and its capability to be synchronized directly to the grid. The main disadvantage, however, is its dependency on the grid for supplying its own reactive power ‘VAr’. Whether fixed or adjustable VAr systems are connected across its terminal, IG must operate at unity power factor at the rated loading while the wind power varies. With supervised control and appropriate coordination, VAr can be used to the benefits of both the wind farm developer and the hosting utility. The incorporation of today adjustable reactive power compensators such as the Static VAr Compensation (SVC and Static Synchronous Compensator (STATCOM with IG are vital ingredient toward a successful penetration of wind energy in today distribution grid to ensure voltage stability during the steady state and transient periods.

  6. rVarBase: an updated database for regulatory features of human variants.

    Science.gov (United States)

    Guo, Liyuan; Du, Yang; Qu, Susu; Wang, Jing

    2016-01-04

    We present here the rVarBase database (http://rv.psych.ac.cn), an updated version of the rSNPBase database, to provide reliable and detailed regulatory annotations for known and novel human variants. This update expands the database to include additional types of human variants, such as copy number variations (CNVs) and novel variants, and include additional types of regulatory features. Now rVarBase annotates variants in three dimensions: chromatin states of the surrounding regions, overlapped regulatory elements and variants' potential target genes. Two new types of regulatory elements (lncRNAs and miRNA target sites) have been introduced to provide additional annotation. Detailed information about variants' overlapping transcription factor binding sites (TFBSs) (often less than 15 bp) within experimentally supported TF-binding regions (∼ 150 bp) is provided, along with the binding motifs of matched TF families. Additional types of extended variants and variant-associated phenotypes were also added. In addition to the enrichment in data content, an element-centric search module was added, and the web interface was refined. In summary, rVarBase hosts more types of human variants and includes more types of up-to-date regulatory information to facilitate in-depth functional research and to provide practical clues for experimental design. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

  7. A molecular marker for in situ genetic resource conservation of Capsicum annuum var. acuminatum (Solanaceae).

    Science.gov (United States)

    Kaewdoungdee, N; Tanee, T

    2013-02-28

    The Thailand cultivar pepper 'phrik man bangchang' (Capsicum annuum var. acuminatum, Solanaceae) was originally cultivated in the Bangchang Subdistrict, Amphawa District in Samut Songkhram Province. The cultivated areas are limited; we verified its distribution in Thailand for in situ 'phrik man bangchang' genetic resource conservation. Samples were collected from the original cultivation area of Bangchang Subdistrict (Or) and were randomly explored in Ratchaburi Province (RB), Khon Kaen Province (KK), and Sakon Nakhon Province (SN). A pure line from The Tropical Vegetable Research Center at Kasetsart University was used as the standard indicator. Two more Capsicum species, C. chinensis and C. frutescens, and a species from another genus in the family, Solanum melongena, were included. A dendrogram constructed from random amplified polymorphic DNA fingerprints indicated that the Or, RB, KK, and SN samples were C. annuum var. acuminatum with supportive similarity coefficients of 0.79 to 0.98. Finally, DNA barcodes, from psbA-trnH spacer region, were provided for the 3 wild species, C. annuum var. acuminatum, C. chinensis, and C. frutescens under GenBank accession Nos. JQ087869-JQ087871. The nucleotide variations between species were 0.23 to 0.26. In summary, 'phrik man bangchang' is still being planted in Bangchang Subdistrict, but only in small areas. The distribution of planting areas is expected to be throughout Thailand.

  8. Triterpenoids from Salvia argentea var. aurasiaca (Pomel) Batt. & Trab. and their chemotaxonomic significance.

    Science.gov (United States)

    Lakhal, Hichem; Kabouche, Ahmed; Alabdul Magid, Abdulmagid; Voutquenne-Nazabadioko, Laurence; Harakat, Dominique; Kabouche, Zahia

    2014-06-01

    Ten triterpenoids were isolated from the exudate of Salvia argentea L. var. aurasiaca (Pomel) Batt. & Trab. Their structures were elucidated by 1D and 2D NMR and HRESIMS analyses as 11α-methoxyurs-12-ene-1β,3β,15α-triol (1), urs-12-ene-1β,3β,11α,15α-tetraol (2), 11α-methoxyurs-12-ene-1β,3β-diol (3), 1β,3β,15α-trihydroxy-11α-methoxyurs-12-en-28-al (4), 1β,3β,15α-trihydroxyurs-12-en-28-al (5), urs-12-ene-1β,3β,15α,28-tetraol (6), 11α-methoxyurs-12-ene-1β,3β,28-triol (7), 13β,28-epoxyurs-12-ene-1β,3β-diol (8), urs-12-ene-3β,7β,15α,28-tetraol (9) and olean-12-ene-3β,7β,15α,28-tetraol (10). A chemotaxonomic survey of the triterpenoids of Salvia species show that triterpenoids from the exudate of S. argentea var. aurasiaca (Pomel) Batt. & Trab., provide some features, such as hydroxylation at C-15, and hydroxylation at C-7. On this basis, S. argentea L. var. aurasiaca (Pomel) Batt. & Trab., is quite different from S. argentea L. Copyright © 2014 Elsevier Ltd. All rights reserved.

  9. Chemical constituents comparison of Codonopsis tangshen, Codonopsis pilosula var. modesta and Codonopsis pilosula.

    Science.gov (United States)

    Lin, Lie-Chwen; Tsai, Tung-Hu; Kuo, Chao-Lin

    2013-01-01

    Dang-shen, radix Codonopsis is one of the best-known traditional Chinese medicines and is used mainly as a tonic agent. Nine commercial products belong to three species of Codonopsis genus, Codonopsis tangshen, Codonopsis pilosula var. modesta and a cultivated species of Codonopsis pilosula, which were purchased from drug stores in Taipei and Taichung, Taiwan. To determine the chemical differences between samples of Dang-shen, a method combining solvent partition and HPLC-UV was used. An enriched fraction of n-butanol was obtained, after partition. Then, the chemical profile was determined using a C18 reversed column chromatography in a gradient solvent system with 10-40% acetonitrile in 0.1% formic acid, for 60 min. A comparison of the constituents in the nine commercial products of Dang-shen showed that compounds codonopyrrolidum A, B and codonoside A only exist in C. tangshen, but not in C. pilosula var. modesta and C. pilosula. A predominate compound, codonopyrrolidum A, can be used to distinguish the herbs, C. tangshen from C. pilosula var. modesta and C. pilosula. Low secondary metabolite content was found in the cultivated species of C. pilosula.

  10. Germinación y establecimiento de Mimosa aculeaticarpa var. biuncifera (Fabaceae-Mimosoideae Seed germination and seedlings establishment of Mimosa aculeaticarpa var. biuncifera (Fabaceae-Mimosoideae

    Directory of Open Access Journals (Sweden)

    Numa P. Pavón

    2011-06-01

    Full Text Available El arbusto deciduo espinoso Mimosa aculeaticarpa var. biuncifera que se distribuye en las zonas semiáridas de México tiene potencial para usarse en proyectos de restauración ecológica; sin embargo, no existe información básica que sustente esta afirmación. Evaluar las condiciones óptimas de germinación y establecimiento de la especie fue el objetivo de este estudio. En cuanto a la germinación, se experimentó con 3 factores (escarificación, luz y temperatura y adicionalmente se determinó la depredación por brúquidos. Para evaluar el establecimiento se midió el efecto de la luz y el nitrógeno en el suelo sobre la sobrevivencia, el crecimiento y la nodulación de las raíces de las plántulas. La escarificación y la temperatura fueron factores significativos en la germinación. Las semillas no fueron fotoblásticas y los parámetros germinativos indicaron que los mejores resultados de germinación se obtuvieron a 30º C. Las semillas dañadas por los brúquidos no germinaron, la infestación fue de 26.8 % y se definieron 4 especies de brúquidos. La mayor sobrevivencia de plántulas y el mayor crecimiento de las raíces se registraron en condiciones de alta luminosidad. La fertilización del suelo con nitrógeno tuvo efecto negativo significante sobre la sobrevivencia y crecimiento de las plántulas. Estos resultados apoyan la recomendación de usar a M. aculeaticarpa var. biuncifera en proyectos de restauración de zonas semiáridas en México.Mimosa aculeaticarpa var. biuncifera, spiny drought-deciduous shrub has the potential to be used in restoration projects in degraded semi-arid areas of México. However, basic information that supports this does not exist. The objective of the study was to evaluate the germination conditions and establishment of this species. Germination experiments were realized using 3 factors (scarification, light and temperature. Also, seeds predation for bruquids was registered. We evaluated the effect

  11. Chromosome doubling of microspore-derived plants from cabbage (Brassica oleracea var. capitata L. and broccoli (Brassica oleracea var. italica L.

    Directory of Open Access Journals (Sweden)

    Suxia eYuan

    2015-12-01

    Full Text Available Chromosome doubling of microspore-derived plants is an important factor in the practical application of microspore culture technology because breeding programs require a large number of genetically stable, homozygous doubled haploid plants with a high level of fertility. In the present paper, 29 populations of microspore-derived plantlets from cabbage (Brassica oleracea var. capitata and broccoli (Brassica oleracea var. italica were used to study the ploidy level and spontaneous chromosome doubling of these populations, the artificial chromosome doubling induced by colchicine, and the influence of tissue culture duration on the chromosomal ploidy of the microspore-derived regenerants. Spontaneous chromosome doubling occurred randomly and was genotype dependent. In the plant populations derived from microspores, there were haploids, diploids, and even a low frequency of polyploids and mixed-ploidy plantlets. The total spontaneous doubling in the 14 cabbage populations ranged from 0 - 76.9%, compared with 52.2 - 100% in the 15 broccoli populations. To improve the rate of chromosome doubling, an efficient and reliable artificial chromosome doubling protocol (i.e., the immersion of haploid plantlet roots in a colchicine solution was developed for cabbage and broccoli microspore-derived haploids. The optimal chromosome doubling of the haploids was obtained with a solution of 0.2% colchicine for 9 - 12 h or 0.4% colchicine for 3 - 9 h for cabbage and 0.05% colchicine for 6 - 12 h for broccoli. This protocol produced chromosome doubling in over 50% of the haploid genotypes for most of the populations derived from cabbage and broccoli. Notably, after 1 or more years in tissue culture, the chromosomes of the haploids were doubled, and most of the haploids turned into doubled haploid or mixed-ploidy plants. This is the first report indicating that tissue culture duration can change the chromosomal ploidy of microspore-derived regenerants.

  12. Estudo micrometeorológico com cenouras (var. nantes I- Influência da temperatura do ar Micrometebeologic study with carrots (var. nantes. I- Influence of air temperature

    Directory of Open Access Journals (Sweden)

    Orivaldo Brunini

    1976-01-01

    Full Text Available Analisou-se o efeito da temperatura do ar sobre o desenvolvimento de cenouras (var. Nantes, cultivadas em latossolo roxo sob quatro condições: com cobertura de plástico sobre a cultura em solo nu; sem cobertura de plástico sobre a cultura e solo com cobertura morta; com cobertura de plástico sobre a cultura e solo com cobertura morta; e sem cobertura de plástico sobre a cultura e solo nu. O tratamento com cobertura de plástico e solo eom cobertura morta foi o que apresentou maior produtividade, além de diminuir o ciclo da cultura. As variações térmicas mostraram-se correlacionadas com o tipo de cobertura a que esteve sujeita a cultura, sendo que o tratamento com cobertura de plástico e solo com cobertura morta apresentou maiores valores da temperatura do ar, e o tratamento sem cobertura conservando o solo nu apresentou menores valores da temperatura do ar.The effect of air temperature on the development of carrots (var. nantes was analysed under four conditions: with polyethylene cover over the crops, and bare soil: without polyethylene cover over the crop, and soil with mulch; with polyethylene cover over the crops, and mulch; and without polyethylene cover over the crop, and bare soil. The treatment with polyethylene cover over the crop and soil with mulch increased the yields and shortened the maturity date. The thermal variations of air were correlated with the type of mulch, and the yields were correlated with air temperature too.

  13. Chromosome Doubling of Microspore-Derived Plants from Cabbage (Brassica oleracea var. capitata L.) and Broccoli (Brassica oleracea var. italica L.).

    Science.gov (United States)

    Yuan, Suxia; Su, Yanbin; Liu, Yumei; Li, Zhansheng; Fang, Zhiyuan; Yang, Limei; Zhuang, Mu; Zhang, Yangyong; Lv, Honghao; Sun, Peitian

    2015-01-01

    Chromosome doubling of microspore-derived plants is an important factor in the practical application of microspore culture technology because breeding programs require a large number of genetically stable, homozygous doubled haploid plants with a high level of fertility. In the present paper, 29 populations of microspore-derived plantlets from cabbage (Brassica oleracea var. capitata) and broccoli (Brassica oleracea var. italica) were used to study the ploidy level and spontaneous chromosome doubling of these populations, the artificial chromosome doubling induced by colchicine, and the influence of tissue culture duration on the chromosomal ploidy of the microspore-derived regenerants. Spontaneous chromosome doubling occurred randomly and was genotype dependent. In the plant populations derived from microspores, there were haploids, diploids, and even a low frequency of polyploids and mixed-ploidy plantlets. The total spontaneous doubling in the 14 cabbage populations ranged from 0 to 76.9%, compared with 52.2 to 100% in the 15 broccoli populations. To improve the rate of chromosome doubling, an efficient and reliable artificial chromosome doubling protocol (i.e., the immersion of haploid plantlet roots in a colchicine solution) was developed for cabbage and broccoli microspore-derived haploids. The optimal chromosome doubling of the haploids was obtained with a solution of 0.2% colchicine for 9-12 h or 0.4% colchicine for 3-9 h for cabbage and 0.05% colchicine for 6-12 h for broccoli. This protocol produced chromosome doubling in over 50% of the haploid genotypes for most of the populations derived from cabbage and broccoli. Notably, after 1 or more years in tissue culture, the chromosomes of the haploids were doubled, and most of the haploids turned into doubled haploid or mixed-ploidy plants. This is the first report indicating that tissue culture duration can change the chromosomal ploidy of microspore-derived regenerants.

  14. Effects of indole-3-acetic acid on arsenic uptake and antioxidative enzymes in Pteris cretica var. nervosa and Pteris ensiformis.

    Science.gov (United States)

    He, Shujuan; Hu, Yongjun; Wang, Hongbin; Wang, Haijuan; Li, Qinchun

    2017-03-04

    A hydroponic experiment was conducted to investigate the effects of indole-3-acetic acid (IAA) on arsenic (As) uptake and antioxidative enzymes in fronds of Pteris cretica var. nervosa (As hyperaccumulator) and Pteris ensiformis (non-hyperaccumulator). Plants were exposed to 2 mg L-1 As(III), As(V) or dimethylarsinic acid (DMA) and IAA concentrations for 14 d. The biomass and total As in the plants significantly increased at 30 mg L-1 IAA. Superoxide dismutase (SOD) activities significantly increased with IAA addition. Catalase (CAT) activities showed a significant increase in P. ensiformis exposed to three As species at 30 or 50 mg L-1 IAA but varied in P. cretica var. nervosa. Peroxidase (POD) activities were unchanged in P. ensiformis except for a significant decrease at 50 mg L-1 IAA under As(III) treatment. However, a significant increase was observed in P. cretica var. nervosa at 10 mg L-1 IAA under As(III) or DMA treatment and at 50 mg L-1 IAA under As(V) treatment. Under DMA stress, malondialdehyde contents in fronds of P. cretica var. nervosa showed a significant decrease at 10 mg L-1 IAA but remained unchanged in P. ensiformis. Therefore, IAA enhanced As uptake and frond POD activity in P. cretica var. nervosa under As stress.

  15. Epitope mapping and topographic analysis of VAR2CSA DBL3X involved in P. falciparum placental sequestration.

    Directory of Open Access Journals (Sweden)

    Madeleine Dahlbäck

    2006-11-01

    Full Text Available Pregnancy-associated malaria is a major health problem, which mainly affects primigravidae living in malaria endemic areas. The syndrome is precipitated by accumulation of infected erythrocytes in placental tissue through an interaction between chondroitin sulphate A on syncytiotrophoblasts and a parasite-encoded protein on the surface of infected erythrocytes, believed to be VAR2CSA. VAR2CSA is a polymorphic protein of approximately 3,000 amino acids forming six Duffy-binding-like (DBL domains. For vaccine development it is important to define the antigenic targets for protective antibodies and to characterize the consequences of sequence variation. In this study, we used a combination of in silico tools, peptide arrays, and structural modeling to show that sequence variation mainly occurs in regions under strong diversifying selection, predicted to form flexible loops. These regions are the main targets of naturally acquired immunoglobulin gamma and accessible for antibodies reacting with native VAR2CSA on infected erythrocytes. Interestingly, surface reactive anti-VAR2CSA antibodies also target a conserved DBL3X region predicted to form an alpha-helix. Finally, we could identify DBL3X sequence motifs that were more likely to occur in parasites isolated from primi- and multigravidae, respectively. These findings strengthen the vaccine candidacy of VAR2CSA and will be important for choosing epitopes and variants of DBL3X to be included in a vaccine protecting women against pregnancy-associated malaria.

  16. Can Hg(II) be determined via quenching of the emission of green fluorescent protein from Anemonia sulcata var. smaragdina?

    Science.gov (United States)

    Bozkurt, Serap Seyhan; Cavas, Levent

    2009-07-01

    Anemonia sulcata var. smaragdina is a widely distributed Cnidarian species along Turkish coastlines. It is also a well-known example of a facultative symbiotic life form in sea ecosystems. Green fluorescent proteins (GFPs) in Anemonia sulcata var. smaragdina have vital roles in this symbiotic form. The fluorescence quenching by Hg(II) in the supernatants obtained from A. sulcata var. smaragdina was shown in this study. According to results, there was a statistical significant relationship (R(2) = 0.9913) between increased Hg(II) concentration and decreased fluorescence intensity of GFP supernatants obtained from A. sulcata var. smaragdina. Mn(II), Fe(II), and Al(II) showed no interference effect and did not change the fluorescence intensity of GFP supernatants obtained from A. sulcata var. smaragdina. In conclusion, the fluorescence quenching of GFPs by Hg(II) can be a novel method to determine the Hg(II) levels in aqueous solution. Therefore, further researches are strongly warranted because of the possible potential applications of the fluorescence quenching of GFPs by Hg(II).

  17. Efek Antijamur Minyak Atsiri Jahe Merah (Zingiber officinale Var. Rubrum terhadap Candida albicans

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    Hermina Karuna Atmaja

    2015-10-01

    Full Text Available The prevalence of Candida albicans infections is increasing in the society. Therefore, an effective and affordable antifungal drug with minimal side effect is needed. Ginger (Zingiber officinale is a traditional herb which has an antifungal effect in its volatile oil. Objective: To investigate antifungal effect of volatile oil from Zingiber officinale var rubrum against C. albicans in vitro, to determine the optimum concentration, and finally to determine the correlation between the various concentrations of the oil and the inhibition zone. Material and method: Strain C. albicans tested was obtained from the Department of Parasitology, Medical Faculty, University of Indonesia. Volatile oil of Zingiber officinale var. rubrum was produced from water and steam distillation of fresh ginger in BALLITRO, Bogor. Concentrations of the volatile oil used were 100%, 50%, 25%, 12,5% 6.25%, 3.125%, 1.56% and 0.78%. Methods used were colony counting and disk diffusion method (by using 6 mm blank disk. The specimens were divided into two groups, treatment group (C. albicans with application of volatile oil and control group (C. albicans without application of volatile oil. Result: There was a significant decrease in the amount of C. albicans colonies from 3.125% to 6.25% of concentration. The amount of C. albicans colonies at concentration 6.25% was also significantly lower than in the control group. Moreover, there was strong and positive correlation between the concentration of the volatile oil and the inhibition zone. Conclusion: Volatile oil from Zingiber officinale var. rubrum has an antifungal effect against C. albicans in vitro with optimum concentration at 6.25%. Increasing concentrations of the oil correlates with increasing inhibition zome.

  18. VarB Plus: An Integrated Tool for Visualization of Genome Variation Datasets

    KAUST Repository

    Hidayah, Lailatul

    2012-07-01

    Research on genomic sequences has been improving significantly as more advanced technology for sequencing has been developed. This opens enormous opportunities for sequence analysis. Various analytical tools have been built for purposes such as sequence assembly, read alignments, genome browsing, comparative genomics, and visualization. From the visualization perspective, there is an increasing trend towards use of large-scale computation. However, more than power is required to produce an informative image. This is a challenge that we address by providing several ways of representing biological data in order to advance the inference endeavors of biologists. This thesis focuses on visualization of variations found in genomic sequences. We develop several visualization functions and embed them in an existing variation visualization tool as extensions. The tool we improved is named VarB, hence the nomenclature for our enhancement is VarB Plus. To the best of our knowledge, besides VarB, there is no tool that provides the capability of dynamic visualization of genome variation datasets as well as statistical analysis. Dynamic visualization allows users to toggle different parameters on and off and see the results on the fly. The statistical analysis includes Fixation Index, Relative Variant Density, and Tajima’s D. Hence we focused our efforts on this tool. The scope of our work includes plots of per-base genome coverage, Principal Coordinate Analysis (PCoA), integration with a read alignment viewer named LookSeq, and visualization of geo-biological data. In addition to description of embedded functionalities, significance, and limitations, future improvements are discussed. The result is four extensions embedded successfully in the original tool, which is built on the Qt framework in C++. Hence it is portable to numerous platforms. Our extensions have shown acceptable execution time in a beta testing with various high-volume published datasets, as well as positive

  19. SEVIRI 4D-var assimilation analysing the April 2010 Eyjafjallajökull ash dispersion

    Science.gov (United States)

    Lange, Anne Caroline; Elbern, Hendrik

    2016-04-01

    We present first results of four dimensional variational (4D-var) data assimilation analysis applying SEVIRI observations to the Eulerian regional chemistry and aerosol transport model EURAD-IM (European Air Pollution Dispersion - Inverse Model). Optimising atmospheric dispersion models in terms of volcanic ash transport predictions by observations is especially essential for the aviation industry and associated interests. Remote sensing satellite observations are instrumental for ash detection and monitoring. We choose volcanic ash column retrievals of the Spinning Enhanced Visible and Infrared Imager (SEVIRI) because as infrared instrument on the geostationary satellite Meteosat Second Generation it delivers measurements with high temporal resolution during day and night. The retrieval method relies on the reverse absorption effect. In the framework of the national initiative ESKP (Earth System Knowledge Platform) and the European ACTRIS-2 (Aerosol, Clouds, and Trace gases Research InfraStructure) project, we developed new modules (forward and adjoint) within the EURAD-IM, which are able to process SEVIRI ash column data as observational input to the 4D-var system. The focus of the 4D-var analysis is on initial value optimisation of the volcanic ash clouds that were emitted during the explosive Eyjafjallajökull eruption in April 2010. This eruption caused high public interest because of air traffic closures and it was particularly well observed from many different observation systems all over Europe. Considering multiple observation periods simultaneously in one assimilation window generates a continuous trajectory in the phase space and ensures that past observations are considered within their uncertainties. Results are validated mainly by lidar (LIght Detection And Ranging) observations, both ground and satellite based.

  20. Water-soluble polysaccharides from Pleurotus ostreatus var. florida mycelial biomass.

    Science.gov (United States)

    Komura, Dirce L; Ruthes, Andrea C; Carbonero, Elaine R; Gorin, Philip A J; Iacomini, Marcello

    2014-09-01

    Pleurotus ostreatus var. florida known as Hiratake has a high nutritional value, presents medicinal and nutraceutical properties and it is one of the consumed mushrooms in Brazil. Thus, the aim of this study was to characterize the chemical structure of polysaccharides found in mycelial biomass produced by submerged culture of P. ostreatus var. florida in order to compare with those found in P. ostreatus var. florida fruit bodies. Aqueous and alkali extracts obtained from mycelial biomass were purified, 13C NMR, GC-MS and chemical techniques were used to characterize three polysaccharide structures: a mannogalactan (MG-PfM) with α-D-Galp and 3-O-Me-α-D-Galp units, both (1→6)-linked, highly substituted at O-2 by D-Manp, a glycogen-like polymer (GLY-PfM) with α-D-Glp (1→4)-linked main chain, partially substituted at O-6 by α-D-Glcp side chains and a (1→3), (1→6) β-D-glucan (βGLC-PfM) with a main chain of β-D-Glcp (1→3)-linked units, partially substituted at O-6 by side chains of 6-O-substituted β-D-glucopyranosyl units, on an average of one to every two residues of the backbone. These results show the possibility to obtain similar and also different molecules from those found in the fruiting body of the same mushroom species, therefore the submerged culture of mushroom is a promising way to give raise molecules of interest. Copyright © 2014. Published by Elsevier B.V.

  1. VAR2CSA signatures of high Plasmodium falciparum parasitemia in the placenta.

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    Eduard Rovira-Vallbona

    Full Text Available Plasmodium falciparum infected erythrocytes (IE accumulate in the placenta through the interaction between Duffy-binding like (DBL domains of parasite-encoded ligand VAR2CSA and chondroitin sulphate-A (CSA receptor. Polymorphisms in these domains, including DBL2X and DBL3X, may affect their antigenicity or CSA-binding affinity, eventually increasing parasitemia and its adverse effects on pregnancy outcomes. A total of 373 DBL2X and 328 DBL3X sequences were obtained from transcripts of 20 placental isolates infecting Mozambican women, resulting in 176 DBL2X and 191 DBL3X unique sequences at the protein level. Sequence alignments were divided in segments containing combinations of correlated polymorphisms and the association of segment sequences with placental parasite density was tested using Bonferroni corrected regression models, taking into consideration the weight of each sequence in the infection. Three DBL2X and three DBL3X segments contained signatures of high parasite density (P<0.003 that were highly prevalent in the parasite population (49-91%. Identified regions included a flexible loop that contributes to DBL3X-CSA interaction and two DBL3X motifs with evidence of positive natural selection. Limited antibody responses against signatures of high parasite density among malaria-exposed pregnant women could not explain the increased placental parasitemia. These results suggest that a higher binding efficiency to CSA rather than reduced antigenicity might provide a biological advantage to parasites with high parasite density signatures in VAR2CSA. Sequences contributing to high parasitemia may be critical for the functional characterization of VAR2CSA and the development of tools against placental malaria.

  2. MOLECULAR IDENTIFICATION OF SARCOPTES SCABIEI VAR. CUNICULI FROM SURABAYA AND MALANG REGIONS OF EAST JAVA

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    Kurnia Desiandura

    2017-12-01

    Full Text Available Scabies is a zoonotic skin disease caused by Sarcoptes scabiei mites. As an emerging/re-emerging parasitic disease, scabies represents a significant global threat to both human and animal health. Numerous cases of scabies in Indonesia have been reported, which support research on the prevalence of S. scabiei. However, most such studies have involved conventional morphological studies, with limited molecular diagnostic studies. The purpose of the present study was the genetic characterization of S. scabiei var. cuniculi in domestic rabbits to generate baseline genotypic data. S. scabiei var. cuniculi was isolated and identified from scabies-infected rabbits from the Surabaya and Malang regions of East Java. Molecular identification was performed using Polymerase Chain Reaction (PCR using specific primers targeting the COX1 gene. We performed COX1 PCR using rabbit isolates of S. scabiei from Indonesia. To the best of our knowledge, no such study had been reported previously. This study was performed in the Laboratory of Veterinary Parasitology, Faculty of Veterinary Medicine and the Tropical Disease Diagnostic Center Laboratory, Universitas Airlangga. The results with agarose gel electrophoresis revealed a 289 bp PCR product amplified from the DNA of S. scabiei isolates from both Surabaya and Malang in accordance with the expected COX1 amplicon size, that indicated a single band 289 bp in length, demonstrating specific detection of S. scabiei var. cuniculi from Surabaya and Malang using COX1 primers. The results were consistent with the calculated amplicon size based on primer positions within the COX1 locus, with the forward primer spanning nucleotides 61–94, and the reverse primer spanning nucleotides 331–350 ( 350 − 61 = 289 bp. PCR genotyping of the isolates yielded an identical nucleotide length of 289 bp. Further studies are required to sequence the amplified fragments for homology assessment.

  3. Ultraestructura del bambú Guadua angustifolia var. bicolor (Poaceae: Bambusoideae, presente en Costa Rica

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    Mayra Montiel

    2006-06-01

    Full Text Available Se estudió la ultraestructura anatómica de la lámina y la vaina de la hoja, así como de la bráctea del culmo, de Guadua angustifolia var. bicolor, por medio del microscopio electrónico de barrido. Se encontraron similitudes con otras guaduas: estomas de alto domo, células largas con paredes sinuosas y células de sílice. Son propios de la var. bicolor el patrón estomático en la zona abaxial de la hoja cerca de la vaina, con la presencia de gran cantidad de tricomas ganchudos y sin papilas; las brácteas de color café dorado que cubren los culmos y tienen tricomas papilares que cubren el haz; y el abundante número de tricomas auriculares, en grupos de 12.The anatomy of several parts of Guadua angustifolia var. bicolor was analyzed and characterized under a scanning electron icroscope. any similarities ere observed with other Guadua species, particularly the presence of high dome stomata, of large cells with sinuous walls and of silica cells. Specific bicolor characteristics include (1 a different stomatal pattern in the adaxial zone of the leaf base (close to the sheath; (2 the abundance of hook-sshaped trichomes without papilla; (3 the distinctive golden brown color of the bract that covers the culm (caused by papillar trichomes that cover the adaxial sheath; and (4 the size of the groups of auricular trichomes (formed by 12 trichomes. Rev. Biol. Trop. 54(Suppl. 2: 13-19. Epub 2006 Dec. 01.

  4. AN IMPROVED CONTROL ALGORITHM FOR «DYNAMIC CAPACITOR» VAR COMPENSATOR

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    S.K. Podnebennaya

    2015-11-01

    Full Text Available Purpose. Modern approaches of VAR compensation are: using compensators with stepped regulation, STATCOMs, active power filters. Recently, more attention is paid to VAR compensator’s design based on the direct AC / AC converters, which are called dynamic capacitors. Methodology. The dynamic capacitor (D-CAP is the capacitor bank, which is connected to the mains through direct AC / AC buck converter. By varying the duty cycle of bidirectional switches, smooth control of reactive power can be achieved. However, in case of distorted mains voltage, D-CAP mains current will have a high THD. This is due to the fact that the D-CAP affects the frequency response of electric grid thus leading to the appearance of resonances. With non-sinusoidal mains voltage, capacitors are affected by harmonics. This reduces the reliability of the D-CAP, increasing the probability of their failure. To eliminate these drawbacks it is suggested to improve the D-CAP control system so that the input current of the dynamic capacitor is forced to be close to sinusoidal. This can be achieved if the duty cycle of the switching bi-directional switches is changed according to the proposed expression. Results. The research is done on a single-phase D-CAP with the proposed control system, its input current diagrams are shown. In contrast to the D-CAP with a constant duty cycle control, the resulting THD of its input current is much lower. Thus, the control system provides a form of the input current that is close to a sine wave. This reduces the influence of mains voltage harmonics on the D-CAP operation, increases its reliability and improves power quality. Originality. The proposed D-CAP control system ensures reliable operation with non-sinusoidal mains voltage. Practical value. Application of D-CAPs with the proposed control system allows for improved energy efficiency of electrical mains by providing VAR compensation and improving power quality.

  5. Seasonal Dynamics of Metabolites in Needles of Taxus wallichiana var. mairei

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    Li Yang

    2016-10-01

    Full Text Available Seasonal variations of the phytochemicals contents in needles of T. wallichiana var. mairei due to the effects of growth meteorological parameters were investigated in this study. The needles of T. wallichiana var. mairei were collected from different months and the contents of taxoids (paclitaxel, 10-deacetylbaccatin III (10-DAB, baccatin III, cephalomannine, 10-deacetyltaxol (10-DAT, flavones (ginkgetin, amentoflavone, quercetin and polysaccharides were quantified by ultra performance liquid chromatography (UPLC and the resonance light scattering (RIL method. The content of taxoids gave the highest level of 1.77 ± 0.38 mg·g−1 in January, and the lowest value of 0.61 ± 0.08 mg·g−1 in September. Unlike taxoids, the content of flavonoids was the highest in August. The content of polysaccharides reached peak value of 28.52 ± 0.57 mg·g−1 in September, which was two times higher than the lowest content of 9.39 ± 0.17 mg·g−1 in January. The contents of paclitaxel, 10-DAB, 10-DAT and polysaccharides significantly depended on meteorological parameters. The mean of minimum temperature (R = −0.61 and length of daylight (R = −0.60 were significantly correlated to 10-DAB content, while 10-DAT level showed significant correlation with length of daylight (R = −0.70 and relative humidity (R = 0.70. In addition, temperature had significantly negative effect on the content of paclitaxel and a significantly positive effect on that of polysaccharides. This study enriched the knowledge on the accumulation pattern of metabolites and could help us to determine the collecting time of T. wallichiana var. mairei for medicinal use.

  6. Simón Bolívar y la cultura iberoamericana

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    Luis López de Mesa

    1979-08-01

    Full Text Available Simón Bolívar -en cuanto héroe de la historia de América- nació en Cartagena del Caribe en 1812 y murió en Lima hacia 1926. Comparando esos catorce años de prodigiosa actividad pública con el promedio de "realizaciones " que en el decurso de su vida lleva a cabo el hombre común, resultaría de longevidad casi milenaria: prueba de ello es que su pensamiento actúa aún en el continente americano, y que sus obras siguen creciendo a la faz del mundo.

  7. Xeractinol: a new flavanonol C-glucoside from Paepalanthus argenteus var. argenteus (Bongard) Hensold (Eriocaulaceae)

    Energy Technology Data Exchange (ETDEWEB)

    Dokkedal, Anne Ligia; Lavarda, Francisco [UNESP, Bauru, SP (Brazil). Faculdade de Ciencias]. E-mail: dokkedal@fc.unesp.br; Santos, Lourdes Campaner dos; Vilegas, Wagner [UNESP, Araraquara, SP (Brazil). Inst. de Quimica

    2007-03-15

    New compound isolated from methanolic extract from the leaves of Paepalanthus argenteus var. argenteus (Bongard) Hensold was characterized as xeractinol, a new dihydroflavonol C-glucoside. The structure was elucidated on the basis of extensive spectroscopic analysis (1D and 2D NMR, MS, HREIMS, IR and UV). Ab initio electronic structure calculations support our proposal to the molecular structure. The dihydroflavonol herein isolated may serve as taxonomic marker of Paepalanthus subgenus Xeractis, because this flavonoid have not been reported in any other taxon of Eriocaulaceae. (author)

  8. Clerodane-type diterpenes from the seed pods of Hymenaea courbaril var. stilbocarpa.

    Science.gov (United States)

    Nogueira, R T; Shepherd, G J; Laverde, A; Marsaioli, A J; Imamura, P M

    2001-12-01

    Three known and two new diterpenes were isolated from the ethyl acetate extract of Hymenaea courbaril var. stilbocarpa seed pods. One of the compounds was elucidated as (5R*,8S*,9S*,10R*)-cleroda-3,13E-dien-15-oic acid and the other was elucidated, after treatment with diazomethane, as methyl (5S*,8S*,9S*,10R*)-cleroda-3,13E-dien-15-oate. The known diterpenes were identified as (-)-ozic acid, (-)-isoozic acid and (-)-kovalenic acid which were characterized as their methyl ester derivatives.

  9. A New ent-Clerodane Diterpene from Hymenaea courbaril var. altissima

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    Nogueira Raquel T.

    2002-01-01

    Full Text Available A new ent-clerodane and two known ent-labdanes were isolated from the barks of Hymenaea courbaril var. altissima (Ducke. The new diterpene was identified, after esterification with diazomethane, as methyl (--(5R,8S,9S,10R-clerod-3-en-15-oate and known diterpenes were identified as methyl (--copalate and methyl (--eperuate. From the EtOAc extract of seed pods a known methyl (--zanzibarate was isolated. The structures of isolated compounds were elucidated based on spectroscopic studies.

  10. A New ent-Clerodane Diterpene from Hymenaea courbaril var. altissima

    OpenAIRE

    Nogueira, Raquel T.; Giacomini, Rosana A.; Shepherd, George J.; Imamura, Paulo M.

    2002-01-01

    A new ent-clerodane and two known ent-labdanes were isolated from the barks of Hymenaea courbaril var. altissima (Ducke). The new diterpene was identified, after esterification with diazomethane, as methyl (-)-(5R,8S,9S,10R)-clerod-3-en-15-oate and known diterpenes were identified as methyl (-)-copalate and methyl (-)-eperuate. From the EtOAc extract of seed pods a known methyl (-)-zanzibarate was isolated. The structures of isolated compounds were elucidated based on spectroscopic studies. ...

  11. Structure and rheological properties of a xyloglucan extracted from Hymenaea courbaril var. courbaril seeds

    OpenAIRE

    Arruda, Isabel R.S.; Albuquerque, Priscilla B.S.; Santos, Gustavo R.C.; Silva, Alexandre G.; Mourão, Paulo A.S.; Correia, Maria T.S.; Vicente, António A.; Carneiro-da-Cunha, Maria G.

    2015-01-01

    Available online 18 November 2014 Hymenaea courbaril var courbaril seed xyloglucan was efficiently extracted with 0.1 M NaCl, followed by ethanol precipitation (yield = 72 ± 5% w/w). Its amorphous structure was identified by the pattern of X-ray diffraction. The monosaccharide composition was determined by GC/MS analysis of the alditol acetates and showed the occurrence of glucose:xylose:galactose:arabinose (40:34:20:6). One-(1D) and two-dimensional-(2D) NMR spectra confirmed a central bac...

  12. A new C20-diterpenoid alkaloid from Aconitum soongaricum var. pubescens.

    Science.gov (United States)

    Chen, Lin; Shan, Lianhai; Xu, Wenliang; Zhang, Jifa; Huang, Shuai; Zhou, Xianli

    2017-03-01

    A new denudatine-type C20-diterpenoid alkaloid, pubesine (1), along with seven known diterpenoid alkaloids, altaconitine (2), 14-benzoylaconine (3), spicatine A (4), 14-benzoylaconine-8-palmitate (5), 14-O-acetylsenbusine A (6), senbusine A (7) and 14-acetylneoline (8) were isolated from the whole plant of Aconitum soongaricum var. pubescens. Their structures were elucidated by means of extensive spectroscopic analyses (NMR and HR-ESI-MS) and comparison with data reported in the literature. All compounds were evaluated for their cytotoxicity against H460, MCF-7 and Hep G2 human cancer cell lines.

  13. Induksi Tunas Ubi Kayu (Mannihot EsculentaCrantz.) Var. Adira 2 secara In Vitro

    OpenAIRE

    Khumaida, Nurul; Fauzi, Ahmad Rifqi

    2013-01-01

    The research aim was to evaluate the effect of culture medium compositon and BAP concentration on growth and shoot multiplication of in vitro-grown cassava (Mannihot esculentaCrantz.) var. €˜Adira 2€™. The experimental design was completely randomize design with two factors. The first factor was composition of basal medium including MS and ½ MS (half of macro and micro nutrients), and the second factor was concentration of BAP (0, 0.5, 1, 1.5, and 3 ppm). The result showed that basal medium M...

  14. Var??n de 30 a??os con dolor pretibial bilateral

    OpenAIRE

    Vargas-Hitos, Jos?? Antonio; Garc??a-Castro, Jos?? Miguel; Ja??n- ??guila, Fernando; Jim??nez-Alonso, Juan

    2012-01-01

    Var??n de 30 a??os que consultaba por dolor intenso y progresivo de dos meses de evoluci??n localizado en la cara anterior y distal de ambas piernas sin factor desencadenante aparente y mala respuesta a tratamiento analg??sico convencional. El paciente negaba otros s??ntomas a excepci??n de un rash eritematoso no pruriginoso generalizado que hab??a afectado tronco, palmas y plantas y que hab??a sido considerado como una reacci??n de hipersensibilidad a alguna de las medicaciones p...

  15. Antiplatelet and antithrombotic effects of the diterpene spiramine Q from Spiraea japonica var. incisa.

    Science.gov (United States)

    Shen, Z; Chen, Z; Li, L; Lei, W; Hao, X

    2000-04-01

    Spiramine Q, a diterpene, was isolated from a Chinese herbal plant Spiraea japonica var. incisa Yu. Born's and Wan HY's methods were used to investigate effects of spiramine Q on rabbit platelet aggregation and serotonin release, respectively. Its antithrombotic effect in mice was also evaluated by Myers' method. Spiramine Q selectively inhibited arachidonic acid-induced platelet aggregation in vitro or ex vivo, and decreased serotonin secretion from rabbit platelets. Spiramine Q (5 mg/kg) decreased the mouse mortality caused by injection of 80 mg/kg arachidonic acid in the tail vein. The results suggested that spiramine Q showed potent antiplatelet and antithrombotic activites.

  16. The Adjustment of VaR to the Empirical Distribution of Returns

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    Radu Lupu

    2006-06-01

    Full Text Available Basel II Recommendations concerning internal rating based models approach for financial institutions and the success of RiskMetrics made Value-at-Risk (VaR is the most important risk measurement instrument at international level. The objective of this paper is to address the problem of adapting this method to the statistical properties of the returns for portfolios that include derivatives in the form of options too. We assume that the returns for the analyzed portfolios are not normally distributed. The methodologies presented are the ones used to capture the percentile when returns follow the features of the empirical distributions reviewed in Cont (2001.

  17. La confianza en las zonas mineras de Antioquia, Bolívar y Córdoba

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    Adolfo Eslava

    2015-12-01

    Full Text Available La corrupción es un fenómeno universal, pero muchas sociedades han contrarrestado sus efectos negativos mediante políticas públicas y esfuerzos sociales que promueven la transparencia y los valores sociales. Este artículo examina los arreglos microinstitucionales de las zonas mineras de Antioquia, Bolívar y Córdoba, y su relación con la corrupción. Los resultados sugieren que las reglas formales e informales y los atributos de estas comunidades desalientan la confianza entre sus miembros e incentivan las prácticas corruptas.

  18. Antimicrobial activity of endophytic fungi Kabatiella caulivora Var. A from Alyxia reinwardtii Bl.

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    Y. Sri Wulan Manuhara

    2012-01-01

    Full Text Available Isolation and characterization of β-1,3-endoglucanase from cabbage (Brassica oleracea var. capitata L. have been done. It showed 40° C of optimum temperature, and optimum pH is 7. After the purification with hydrophobic interaction chromatography and ion exchange chromatography, it’s activity was increased. Based on SDS-PAGE analysis, β-1,3-endoglucanase have molecular weight around 48 kD. Antifungal activity of β-1,3-endoglukanase show that it has best inhibition zone on Fusarium solanii at extract from ion exchange chromatography.

  19. Pollination ecology of Swartzia apetala Raddi var. apetala (leguminosae-papilionoideae

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    Maria Cecília de Chiara Moço

    1999-01-01

    Full Text Available The pollination ecology of Swartzia apetala Raddi var. apetala was studied in the restinga of Maricá, State of Rio de Janeiro, Brazil. S. apetala var. apetala is a shrub with asynchronic annual blooming, between the months of November and April (hot-rainy season. Each plant can exhibit more than one blooming episode in this period. Their flowers are hermaphrodites, apetalous, heterantherous, odoriferous, and the pollen represents the only reward offered to visitors. It is pollinized by species of Centris and Xylocopa, solitary and polyletic bees, which collect the pollen by means of vibratory movements. Other bees such as Apis mellifera, Pseudaugochloropsis graminea and Trigona spinipes are only pollen-thieves. In this variety of Swartzia vibrating is an efficient method to collect pollen from the anthers despite non-poricidal dehiscence.. The flowering phenology and the behavior of visitors influence the rate of outcrossing.A ecologia da polinização de Swartzia apetala Raddi var. apetala foi estudada na restinga de Maricá, Estado do Rio de Janeiro, Brasil. S. apetala var. apetala é um arbusto com floração do tipo anual assincrônica, entre os meses de novembro e abril (estação quente- chuvosa. Cada planta pode apresentar mais de um episódio de floração neste período. As flores são hermafroditas, apétalas, heterândricas, odoríferas e o polem constitui a única recompensa oferecida aos visitantes. É polinizada por espécies de Centris e Xylocopa, abelhas solitárias e poliléticas, que coletam o polem através do método de vibração. Nesta variedade de Swartzia a vibração é um método eficiente de coleta de polem apesar das anteras apresentarem deiscência rimosa. Outras abelhas, como Apis mellifera, Pseudaugochloropsis graminea e Trigona spinipes, são pilhadoras de pólen. A fenologia da floração e o comportamento dos visitantes florais influenciam a taxa de fertilização cruzada.

  20. A clarified position for solanum lycopersicum var. cerasiforme in the evolutionary history of tomatoes (solanaceae

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    Causse Mathilde

    2008-12-01

    Full Text Available Abstract Background The natural phenotypic variability present in the germplasm of cultivated plants can be linked to molecular polymorphisms using association genetics. However it is necessary to consider the genetic structure of the germplasm used to avoid false association. The knowledge of genetic structure of plant populations can help in inferring plant evolutionary history. In this context, we genotyped 360 wild, feral and cultivated accessions with 20 simple sequence repeat markers and investigated the extent and structure of the genetic variation. The study focused on the red fruited tomato clade involved in the domestication of tomato and confirmed the admixture status of cherry tomatoes (Solanum lycopersicum var. cerasiforme. We used a nested sample strategy to set-up core collection maximizing the genetic diversity with a minimum of individuals. Results Molecular diversity was considerably lower in S. lycopersicum i.e. the domesticated form. Model-based analysis showed that the 144 S. lycopersicum var. cerasiforme accessions were structured into two groups: one close to the domesticated group and one resulting from the admixture of the S. lycopersicum and S. pimpinellifolium genomes. SSR genotyping also indicates that domesticated and wild tomatoes have evolved as a species complex with intensive level of hybridization. We compiled genotypic and phenotypic data to identify sub-samples of 8, 24, 32 and 64 cherry tomato accessions that captured most of the genetic and morphological diversity present in the entire S. lycopersicum var. cerasiforme collection. Conclusion The extent and structure of allelic variation is discussed in relation to historical events like domestication and modern selection. The potential use of the admixed group of S. lycopersicum var. cerasiforme for association genetics studies is also discussed. Nested core collections sampled to represent tomato diversity will be useful in diversity studies. Molecular and

  1. Chemical constituents of the essential oil and antibacterial activity of Zingiber wrayi var. halabala

    OpenAIRE

    Wiratda Wichaporn; Vanida Chairgulprasert; Somporn Prasertsongskun

    2005-01-01

    Zingiber wrayi var. halabala, a local herb from the Bala Forest in Narathiwat, was investigated for its chemical constituents and antibacterial activity. The essential oil was obtained by steam distillation of fresh rhizomes in 3.6 % yield. The GC-MS data indicated the presence of four compounds including trans-anethole, estragol, camphor and m-phenylphenol. Further quantitative analysis showed the essential oil to contain 96.8% w/w of trans-anethole. The oil, together with petroleum ether, d...

  2. Reinstatement of the Loyalty Islands Sandalwood, Santalum austrocaledonicum var. glabrum (Santalaceae), in New Caledonia.

    Science.gov (United States)

    Butaud, Jean-François

    2015-01-01

    Sandalwoods encompass 19 species restricted to southeast Asia and the Pacific. The species Santalum austrocaledonicum Vieill. (Santalaceae) is endemic to New Caledonia (Grande-Terre, Isle of Pines, Loyalty Islands) and Vanuatu, where several varieties are recognized. The Loyalty Islands sandalwood variety is here reinstated as Santalum austrocaledonicum var. glabrum Hürl. emend. Butaud & P.Firmenich, mut. char. It was previously considered a synonym of the type variety; however, new morphological and genetic studies confirmed its distinctiveness. The key for New Caledonian varieties of Santalum austrocaledonicum has been updated and a short description of its essential oil composition and organoleptic quality is given.

  3. Physalis alkekengi L. var. franchetii (Mast.) Makino: An ethnomedical, phytochemical and pharmacological review.

    Science.gov (United States)

    Li, Ai-Ling; Chen, Bang-Jiao; Li, Guo-Hui; Zhou, Ming-Xing; Li, Yan-Ru; Ren, Dong-Mei; Lou, Hong-Xiang; Wang, Xiao-Ning; Shen, Tao

    2018-01-10

    The calyxes and fruits of Physalis alkekengi L. var. franchetii (Mast.) Makino (Physalis Calyx seu Fructus), have been widely used in traditional and indigenous Chinese medicines for the therapy of cough, excessive phlegm, pharyngitis, sore throat, dysuria, pemphigus, eczema, and jaundice with a long history. The present review aims to achieve a comprehensive and up-to-date investigation in ethnomedical uses, phytochemistry, pharmacology, and toxicity of P. alkekengi var. franchetii, particularly its calyxes and fruits. Through analysis of these findings, evidences supporting their applications in ethnomedicines are illustrated. Possible perspectives and opportunities for the future research are analyzed to highlight the gaps in our knowledge that deserves further investigation. Information on P. alkekengi var. franchetii was collected via electronic search of major scientific databases (e.g. Web of Science, SciFinder, Google Scholar, Pubmed, Elsevier, SpringerLink, Wiley online and China Knowledge Resource Integrated) for publications on this medicinal plant. Information was also obtained from local classic herbal literature on ethnopharmacology. About 124 chemical ingredients have been characterized from different parts of this plant. Steroids (particularly physalins) and flavonoids are the major characteristic and bioactive constituents. The crude extracts and the isolated compounds have demonstrated various in vitro and in vivo pharmacological functions, such as anti-inflammation, inhibition of tumor cell proliferation, antimicrobial activity, diuretic effect, anti-diabetes, anti-asthma, immunomodulation, and anti-oxidation. P. alkekengi var. franchetii is an important medicinal plant for the ethnomedical therapy of microbial infection, inflammation, and respiratory diseases (e.g. cough, excessive phlegm, pharyngitis). Phytochemical and pharmacological investigations of this plant definitely increased in the past half century. The chemical profiles, including

  4. A biologically active fructan from the roots of Arctium lappa L., var. Herkules.

    Science.gov (United States)

    Kardosová, A; Ebringerová, A; Alföldi, J; Nosál'ová, G; Franová, S; Hríbalová, V

    2003-11-01

    From the roots of Arctium lappa L., var. Herkules a low-molecular-weight fructofuranan of the inulin-type has been isolated by water extraction and ethanol precipitation, followed by ion-exchange chromatography and gel filtration of the crude precipitate. The methods employed in structural determination were methylation analysis and 1H and 13C NMR spectral measurements. In tests for antitussive activity in cats the fructan was found to be equally active as some non-narcotic, synthetic preparations used in clinical practice to treat coughing, and in mitogenic and comitogenic tests its biological response was comparable to that of the commercial Zymosan immunomodulator.

  5. Tronchuda cabbage (Brassica oleracea L. var. costata DC): scavenger of reactive nitrogen species.

    Science.gov (United States)

    Sousa, Carla; Valentão, Patrícia; Ferreres, Federico; Seabra, Rosa M; Andrade, Paula B

    2008-06-11

    The ability of tronchuda cabbage ( Brassica oleracea L. var. costata DC) to act as a scavenger of the reactive nitrogen species nitric oxide and peroxynitrite was investigated. The aqueous extracts obtained from tronchuda cabbage seeds and from its external and internal leaves exhibited a concentration dependent scavenging capacity. The antioxidant potential observed against the two reactive species was as follows: seeds > external leaves > internal leaves. In order to establish a possible correlation with the chemical composition of the extracts, the activity of ascorbic and sinapic acids and kaempferol 3- O-rutinoside was also studied. Among the compounds tested, sinapic acid showed the strongest antioxidant activity against both species.

  6. PRUNUS SERRULATA VAR. 'KANZAN' MICROSHOOTS BEHAVIOUR DURING IN VITRO ROOTING AND ACCLIMATIZATION PHASES

    Directory of Open Access Journals (Sweden)

    Magdalena Duţă

    2012-04-01

    Full Text Available The paper presents aspects regarding in vitro rooting and acclimatization percentages of Prunus serrulata var. Kanzan vitroplants. During in vitro rooting stage, good results were obtained using a nutrient medium with the following composition: halved Murashige - Skoog mineral salts, Linsmaier – Skoog vitamins, gibberellic acid (GA 0.1 mg/l, indolelacetic acid (IAA 1.0 mg/l, activated carbon 0.3 mg/l, iron chelate 38 mg/l, 30 g/l dextrose, 7 g/l agar. The substrate recommended for acclimatization of in vitro plants is composed of black peat + perlite (1:1, at pH = 6.0.

  7. Aislamiento de cryptococcus neoformans var. Grubii en un felino doméstico. Reporte de caso

    Directory of Open Access Journals (Sweden)

    Marlyn Zapata Montoya

    2009-12-01

    Full Text Available Se halló evidencia clínica, citológica y serológica de una infección natural con Criptococcus en un felino criollo proveniente de La Mesa, Cundinamarca (Colombia. C. neoformans var. grubii fue aislado del cultivo de secreciones nasales del paciente. Para el tratamiento específico se utilizó fluconazol, que mostró buenos resultados a partir del primer mes de haber iniciado su administración.

  8. Chemodiversity Associated with Cytotoxicity and Antimicrobial Activity of Piper aduncum var. ossanum.

    Science.gov (United States)

    Gutiérrez, Yamilet; Montes, Rodny; Scull, Ramón; Sánchez, Arturo; Cos, Paul; Monzote, Lianet; Setzer, William N

    2016-12-01

    Chemical analysis, antimicrobial activity and cytotoxic effects of essential oils (EOs) from leaves of Piper aduncum var. ossanum from two localities Bauta (EO-B) and Ceiba (EO-C), Artemisa Province, Cuba, were determined. EOs were obtained by hydrodistillation and analyzed by gas chromatography/mass spectrometry. EO-B demonstrated higher activity against S. aureus and L. amazonensis; while a lower cytotoxicity on mammalian cells was observed. Both EOs displayed the same activity against Plasmodium falciparum, Trypanosoma cruzi, Trypanosoma brucei, and Leishmania infantum. Both EOs were inactive against Escherichia coli and Candida albicans. © 2016 Wiley-VHCA AG, Zurich, Switzerland.

  9. The inhibitory principle of lipopolysaccharide-induced nitric oxide production from Inula britannica var. chinensis.

    Science.gov (United States)

    Je, Kang-Hoon; Han, Ah-Reum; Lee, Hyun-Tai; Mar, Woongchon; Seo, Eun-Kyoung

    2004-01-01

    A sesquiterpene lactone, 1-O-acetyl-4R,6S-britannilactone (1) isolated from the flowers of Inula britannica L. var. chinensis (Rupr.) Reg. (Compositae), was found as an iNOS inhibitory constituent for the first time with an IC50 value of 22.1 microM which is more potent than the positive control, L-N6-(1-iminoethyl)lysine (IC50 = 33.7 microM). Structure of compound 1 was identified by 1D and 2D NMR experiments and by comparison with the reference standard.

  10. The model of television in Pedro Almodóvar. Cinema vs. Televisión

    OpenAIRE

    Gómez Gómez, Agustín

    2014-01-01

    In this paper we analyze the TV model presented by Pedro Almodóvar in his filmography. Of the eighteen movies, but three, all contain, one way or another, a reference to TV in a critical sense. Through the analysis of all his films, we observe the way in which TV appears and focus on four models or functions of the TV in his work. The first one has to do with the viewing mode, which we have named “domestic model”. A second function, which we will call “realistic”, is one which means that only...

  11. Phytotoxic Effects of Cinnamic Acid on Cabbage (Brassica oleracea var. capitata

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    Singh, N. B.

    2013-04-01

    Full Text Available The present study deals with the effects of exogenous application of cinnamic acid (CA on growth and metabolism in growing seedlings of Brassica oleracea var. capitata (cabbage in hydroponic culture. CA was added at 0.5, 1.0 and 1.5 mM concentrations. CA has shown inhibitory effects on shoot and root length, fresh and dry weight of seedlings. CA significantly decreased the photosynthetic pigments, nitrate reductase activity and protein content. Graded concentrations of CA increased lipid peroxidation and sugar content. The increasing concentrations of CA significantly increased the antioxidative enzyme activities viz. superoxide dismutase, catalase, peroxidase against the oxidative stress caused by CA.

  12. Bioassay-guided isolation and identification of an antibacterial compound from Ferula persica var. persica roots

    Directory of Open Access Journals (Sweden)

    Ahmad-Reza Shahverdi

    2005-01-01

    Full Text Available The antibacterial activities of the chloroform and water extracts of Ferula persica var. persica (Apiaceaeroots were studied by the disk diffusion method. While the chloroform extract of F. persica roots showed antibacterial activity, the water extract of the roots at the concentrations that tested did not show any activity. By bioassay-guided fractionation of the chloroform extract of the roots by preparative thin layer chromatography (PTLC a compound was found which was active against some bacteria. By conventional spectroscopy methods the active fraction was identified as umbelliprenin. This coumarin was mostly active against B. subtillis, B. cereus, E. coli, K. ponumoniae, S. typhi, S. aureus, and S. epidermilis.

  13. Filmy dla muzyki. Egar Varèse i Bill Viola

    OpenAIRE

    Mungen, Anno

    2010-01-01

    Anno Mungen focuses on “films made for music” and on the rare phenomenon of ‘music depicted by picture’ (S. Kracauer). The narration about historical metamorphoses of varied forms of coexistence between music and picture is accompanied by a reflection on the laws of audiovisual perception. The main examples are discussed, these concentrating on the artistic ideas of Walt Disney’s animated film Fantasia and – first of all – on Edgard Varèse’s bold ideal of spatial music, attained post mortem i...

  14. VaR and CVaR Implied in Option Prices

    Directory of Open Access Journals (Sweden)

    Giovanni Barone Adesi

    2016-02-01

    Full Text Available VaR (Value at Risk and CVaR (Conditional Value at Risk are implied by option prices. Their relationships to option prices are derived initially under the pricing measure. It does not require assumptions about the distribution of portfolio returns. The effects of changes of measure are modest at the short horizons typically used in applications. The computation of CVaR from option price is very convenient, because this measure is not elicitable, making direct comparisons of statistical inferences from market data problematic.

  15. El varón maltratado. Representaciones sociales de la masculinidad dañada

    OpenAIRE

    Folguera Cots, Laia

    2013-01-01

    Durante largo tiempo, pensar la violencia doméstica –y lo que es más, conceptualizarla– ha remitido usualmente a reflexionar sólo sobre la violencia ejercida por varones sobre mujeres: ser mujer y víctima es un binomio habitual, mientras que, por el contrario, la posibilidad del varón como víctima en relaciones de pareja está raramente contemplada. La gravedad de las agresiones que sufren las mujeres a manos de los varones ha llevado a convertirlas en objeto de análisis desde la perspecti...

  16. Varón inmunocompetente con gonartritis séptica por streptococcus grupo A.

    OpenAIRE

    Llorens Eizaguerri, M.; Seral García, Belén; Seral García, Cristina; Albareda Albareda, Jorge Cruz

    2013-01-01

    La artritis séptica es una urgencia médica que precisa un diagnóstico y tratamiento precoz. Las mani - festaciones clínicas y agentes causales varían según edad y estado clínico del paciente. Su localización más frecuente es la rodilla. Presentamos un caso de gonartritis séptica por Streptococcus pyogenes que se manifestó con fascitis necrotizante y fracaso multiorgánico. Se prescribieron tratamientos médicos agresivos, curas-desbridamientos de la herida y fisioterapia ha...

  17. Rosa gallica l. var. officinalis (hort. ex Andrews) Ser. en el norte de Alicante (Comunidad Valenciana)

    OpenAIRE

    Ríos Ruiz, Segundo; Martinez-Frances, Vanessa

    2015-01-01

    Se ha localizado en el margen de la carretera comarcal CV 795 en su kilómetro 17 próximo a Ulls de Canals y dentro del término de Banyeres de Mariola, una buena población asilvestrada de Rosa gallica L. var. officinalis (hort. ex Andrews) Ser., que corresponde a la segunda población localizada en Alicante, puesto que se conocía una población pero situada próxima al litoral en la comarca de la Marina Alta. La llamada rosa de Provins o provincialis (de Provenza) es una de las rosas cultivadas e...

  18. Empleo del ozono en la poscosecha de fruta bomba var Maradol-roja

    OpenAIRE

    Mayra Bataller Venta; José Efraín González Ramirez; Eliet Veliz Lorenzo; Dariem Nápoles González; Caridad Álvarez Álvarez

    2010-01-01

    El objetivo del presente estudio fue evaluar la efectividad de la aplicación de ozono en el control del crecimiento de hongos patógenos, así como su efecto en la vida de anaquel, en el porcentaje de germinación de las semillas y en el contenido de sólidos solubles (0Brix) durante la poscosecha de fruta bomba (Carica papaya) var Maradol-roja. Tres dosis de ozono fueron aplicadas in vitro a siete especies de hongos, los cuales se identifican entre los más comunes que causan la pudrición de la f...

  19. Presencia simultánea de las fases tetraspororangial y carposporangial sobre el mismo talo en Polysiphonia scopulorum var. villum (Rhodomelaceae, Rhodophyta Mixed phases tetrasporangial and carposporangial on the same thallus in Polysiphonia scopulorum var. villum (Rhodomelaceae, Rhodophyta

    Directory of Open Access Journals (Sweden)

    Raúl Aguilar-Rosas

    2010-04-01

    Full Text Available Se describe por primera vez la presencia simultánea de las fases tetrasporangial (tetrasporangios y carposporangial (cistocarpos sobre el mismo talo en Polysiphonia scopulorum W.H. Harvey var. villum (J. Agardh Hollenberg. El material fue recolectado en la zona intermareal rocosa de Playa Saldamando, Baja California, México, durante octubre de 2004.Mixed tetrasporangial (tetrasporangia and carposporangial (cistocarps phases on the same thallus in Polysiphonia scopulorum W.H. Harvey var. villum (J. Agardh Hollenberg (Rhodomelaceae, Rhodophyta are described for the first time. The material was collected on Octuber, 2004 in the intertidal zone in Playa Saldamando, Baja California, Mexico.

  20. Koolipärimuse kogumisest Noarootsis ja Vormsis 2006. aasta kevadel : Rootsi-Eesti lastenaljade kogumik Det var en ko och det var poängen / Piret Voolaid

    Index Scriptorium Estoniae

    Voolaid, Piret, 1971-

    2007-01-01

    Autor käsitleb artiklis Ahvenamaa Põhjamaade Instituudi (Nordens Institut på Åland) eestvedamisel korraldatud lastepärimuse projekti, mille käigus koguti koolipärimust Soomest Ahvenamaalt ja Rootsist Gotlandilt ning Eestist endistelt rannarootsi aladelt. Kogutu põhjal ilmus rootsikeelne antoloogiline naljakogumik Det var en ko och det var poängen. Artiklis keskendutakse välitööde kogumismetoodikale ja tulemustele Eestis. Välitööd toimusid Noarootsi Koolis ja Vormsi Põhikoolis

  1. Immunogenicity of the Plasmodium falciparum PfEMP1-VarO Adhesin: Induction of Surface-Reactive and Rosette-Disrupting Antibodies to VarO Infected Erythrocytes

    Science.gov (United States)

    Guillotte, Micheline; Juillerat, Alexandre; Igonet, Sébastien; Hessel, Audrey; Petres, Stéphane; Crublet, Elodie; Le Scanf, Cécile; Lewit-Bentley, Anita; Bentley, Graham A.

    2015-01-01

    Adhesion of Plasmodium falciparum-infected red blood cells (iRBC) to human erythrocytes (i.e. rosetting) is associated with severe malaria. Rosetting results from interactions between a subset of variant PfEMP1 (Plasmodium falciparum erythrocyte membrane protein 1) adhesins and specific erythrocyte receptors. Interfering with such interactions is considered a promising intervention against severe malaria. To evaluate the feasibility of a vaccine strategy targetting rosetting, we have used here the Palo Alto 89F5 VarO rosetting model. PfEMP1-VarO consists of five Duffy-Binding Like domains (DBL1-5) and one Cysteine-rich Interdomain Region (CIDR1). The binding domain has been mapped to DBL1 and the ABO blood group was identified as the erythrocyte receptor. Here, we study the immunogenicity of all six recombinant PfEMP1-VarO domains and the DBL1- CIDR1 Head domain in BALB/c and outbred OF1 mice. Five readouts of antibody responses are explored: ELISA titres on the recombinant antigen, VarO-iRBC immunoblot reactivity, VarO-iRBC surface-reactivity, capacity to disrupt VarO rosettes and the capacity to prevent VarO rosette formation. For three domains, we explore influence of the expression system on antigenicity and immunogenicity. We show that correctly folded PfEMP1 domains elicit high antibody titres and induce a homogeneous response in outbred and BALB/c mice after three injections. High levels of rosette-disrupting and rosette-preventing antibodies are induced by DBL1 and the Head domain. Reduced-alkylated or denatured proteins fail to induce surface-reacting and rosette-disrupting antibodies, indicating that surface epitopes are conformational. We also report limited cross-reactivity between some PfEMP1 VarO domains. These results highlight the high immunogenicity of the individual domains in outbred animals and provide a strong basis for a rational vaccination strategy targeting rosetting. PMID:26222304

  2. Immunogenicity of the Plasmodium falciparum PfEMP1-VarO Adhesin: Induction of Surface-Reactive and Rosette-Disrupting Antibodies to VarO Infected Erythrocytes.

    Directory of Open Access Journals (Sweden)

    Micheline Guillotte

    Full Text Available Adhesion of Plasmodium falciparum-infected red blood cells (iRBC to human erythrocytes (i.e. rosetting is associated with severe malaria. Rosetting results from interactions between a subset of variant PfEMP1 (Plasmodium falciparum erythrocyte membrane protein 1 adhesins and specific erythrocyte receptors. Interfering with such interactions is considered a promising intervention against severe malaria. To evaluate the feasibility of a vaccine strategy targetting rosetting, we have used here the Palo Alto 89F5 VarO rosetting model. PfEMP1-VarO consists of five Duffy-Binding Like domains (DBL1-5 and one Cysteine-rich Interdomain Region (CIDR1. The binding domain has been mapped to DBL1 and the ABO blood group was identified as the erythrocyte receptor. Here, we study the immunogenicity of all six recombinant PfEMP1-VarO domains and the DBL1- CIDR1 Head domain in BALB/c and outbred OF1 mice. Five readouts of antibody responses are explored: ELISA titres on the recombinant antigen, VarO-iRBC immunoblot reactivity, VarO-iRBC surface-reactivity, capacity to disrupt VarO rosettes and the capacity to prevent VarO rosette formation. For three domains, we explore influence of the expression system on antigenicity and immunogenicity. We show that correctly folded PfEMP1 domains elicit high antibody titres and induce a homogeneous response in outbred and BALB/c mice after three injections. High levels of rosette-disrupting and rosette-preventing antibodies are induced by DBL1 and the Head domain. Reduced-alkylated or denatured proteins fail to induce surface-reacting and rosette-disrupting antibodies, indicating that surface epitopes are conformational. We also report limited cross-reactivity between some PfEMP1 VarO domains. These results highlight the high immunogenicity of the individual domains in outbred animals and provide a strong basis for a rational vaccination strategy targeting rosetting.

  3. Cryptococcus neoformans and Histoplasma capsulatum in dove's (Columbia livia) excreta in Bolívar state, Venezuela.

    Science.gov (United States)

    Cermeño, Julman R; Hernández, Isabel; Cabello, Ismery; Orellán, Yida; Cermeño, Julmery J; Albornoz, Rosa; Padrón, Elba; Godoy, Gerardo

    2006-01-01

    Dove's excreta samples from state Bolívar several places in Venezuela, were evaluated to determine the presence of primary pathogen fungi in dove's excreta. Filamentous fungi such as: Aspergillus spp (31.1%), Mucor spp (20.2%), Penicillium spp (9.5%) and Fusarium spp (6.7%) were the most frequently isolated strains. Species such as Candida albicans (4.1%), Cryptococcus albidus and Rhodotorula spp (2.7%), C. neoformans var neoformans (1.4%), Trichosporum asahii (1.4%), Curvularia, Microsporum and Phoma as well as Histoplasma capsulatum (1.3%) were less frecuently isolated. This study shows the presence of C. neoformans and H. capsulatum in dove's excreta from Bolívar state, it remarks infection risk with these pathogens fungi and the necessity to avoid accumulation of dove's excreta.

  4. Selection and characterization of Euglena anabaena var. minor as a new candidate Euglena species for industrial application.

    Science.gov (United States)

    Suzuki, Kengo; Mitra, Sharbanee; Iwata, Osamu; Ishikawa, Takahiro; Kato, Sueo; Yamada, Koji

    2015-01-01

    Euglena gracilis is a microalgae used as a model organism. Recently, mass cultivation of this species has been achieved for industrial applications. The genus Euglena includes more than 200 species that share common useful features, but the potential industrial applications of other Euglena species have not been evaluated. Thus, we conducted a pilot screening study to identify other species that proliferate at a sufficiently rapid rate to be used for mass cultivation; we found that Euglena anabaena var. minor had a rapid growth rate. In addition, its cells accumulated more than 40% weight of carbohydrate, most of which is considered to be a euglenoid specific type of beta-1-3-glucan, paramylon. Carbohydrate is stored in E. anabaena var. minor cells during normal culture, whereas E. gracilis requires nitrogen limitation to facilitate paramylon accumulation. These results suggest the potential industrial application of E. anabaena var. minor.

  5. Studies on the susceptibility of peas and field peas cultivars to Phoma medicaginis var. pinodella (Jones Boerema

    Directory of Open Access Journals (Sweden)

    Helena Furgał-Węgrzycka

    2013-12-01

    Full Text Available The aim of the work was to find the plants resistant to Phoma medicaginis var. pinodella causing leaf spot-pot of peas and field peas. Fourty five cultivars of peas and field peas and 6 breeding materials were tested in field in the period 1975-1978 on artificially inoculated field plots. Cultivars: Jubilat, Paloma, Proteus, Uladowskij Jubilejnyj, Fioletowa, Nieznanicka and Rosacrone were to be less susceptible. In laboratory and greenhouse conditions peas and field peas cultivars were examined for susceptible to pathotypes 3 and 5 of Phoma medicaginis var. pinodella. The results obtained proved that cultivars: Auralia, Finale, Flavanda, Jubilat, Paloma, Proteus, Uladowskij Jubilejnyj, Nieznanicka and Rosacrone were to be less susceptible to two pathotypes of P. medicaginis var. pinodella.

  6. PROYECCIÓN DE LA TASA DE CAMBIO DE COLOMBIA BAJO CONDICIONES DE PPA: EVIDENCIA EMPÍRICA USANDO VAR

    Directory of Open Access Journals (Sweden)

    CATHERINE FAYAD HERNÁNDEZ

    2009-01-01

    Full Text Available El trabajo evalúa la proyección de la tasa de cambio (peso colombiano/dólar con datos de 1995 a 2005 de Colombia a través del modelo de Tasa de Cambio de Paridad de Poder Adquisitivo (TCPPA. Se realizó una comparación del desempeño en la muestra (reservando los datos históricos de 2001 a 2005 de las proyecciones de modelos que utilizan la PPA, con las de un modelo de Vectores Autorregresivos (VAR. El método VAR tiene mejor desempeño para predecir la tasa de cambio nominal, de acuerdo con los indicadores RMSE, MAE y U-Theil, mientras que de acuerdo con el MAPE en el primer y segundo mes pronosticado, el VAR tiene peor desempeño que los modelos que utilizan PPA.

  7. A new fuzzy adaptive particle swarm optimization for daily Volt/Var control in distribution networks considering distributed generators

    Energy Technology Data Exchange (ETDEWEB)

    Niknam, Taher [Electronic and Electrical Engineering Department, Shiraz University of Technology, Shiraz (Iran); Firouzi, Bahman Bahmani [Islamic Azad University, MArvdasht Branch (Iran); Ostadi, Amir [Department of Electrical and Computer Engineering, University of Toronto, Toronto (Canada)

    2010-06-15

    This paper presents a novel approach for daily Volt/Var control in distribution systems using Distributed Generation (DG) units. The impact of DG units on Volt/Var control is significant in a distribution network with radial configuration and small X/R ratio. In this paper, a price-based approach is adopted to determine the optimum active and reactive power dispatch for the DG units, the reactive power contribution of the capacitor banks, and the tap settings of the transformers in a day in advance. A fuzzy adaptive particle swarm optimization (FAPSO) method is used to solve the daily Volt/Var control which is a non-linear mixed-integer problem. A mathematical expression of the proposed method and its effectiveness using simulation results are provided. (author)

  8. ANALISIS VECTOR AUTO REGRESSIVE (VAR TERHADAP KORELASI ANTARA BELANJA PUBLIK DAN PERTUMBUHAN EKONOMI DI SULAWESI SELATAN, TAHUN 1985-2005

    Directory of Open Access Journals (Sweden)

    Abustan Abustan

    2009-06-01

    Full Text Available Vector Auto Regression (VAR is an analysis or statistic method which can be used to predict time series variable and to analyst dynamic impact of disturbance factor in the variable system. In addition, VAR analysis is very useful to assess the interrelationship between economic variables. This research through the following test phases: unit root test, test of hypothesis, Granger causality test, and form a vector autoregresion model (VAR. The data used in this research is the GDP data and budget data of South Sulawesi in the period 1985-2004. The research aims to analyze the interrelationship between public expenditure and economic growth in South Sulawesi. The result showed statistically significant in economic growth (PDRB influence public expenditure (APBD, however, not vice versa. Otherwise, for the need of APBD prediction, the used of lag 4 was the optimum model based on the causal relationship to PDRB.

  9. Antimicrobial activity and a comparative essential oil analysis of Centaurea pulcherrima Willd. var. pulcherrima extracted by hydrodistillation and microwave distillation.

    Science.gov (United States)

    Kahriman, N; Tosun, G; İskender, N Yılmaz; Alpay Karaoğlu, Ş; Yayli, N

    2012-01-01

    The essential oils of Centaurea pulcherrima Willd. var. pulcherrima (Asteraceae) were isolated by hydrodistillation (HD) and a microwave distillation (MD), than characterised by GC-FID and GC-MS. A total of 58 and 57 compounds were identified, constituting over 93.7%, and 91.6% of volatile oil composition of C. pulcherrima var. pulcherrima, respectively. Sesquiterpene hydrocarbons were shown to be the main group of constituents (HD: 42.4% versus MD: 51.5%). The major component of the oils of C. pulcherrima var. pulcherrima was germacrene D (HD, 17.8% versus MD, 23.2%). The antimicrobial activity of the isolated essential oils of the plant was also investigated, and they showed good antibacterial activity against to tested gram-positive bacteria, especially to M. smegmatis and a yeast-like fungus C. albicans.

  10. Polimorfismo en Phaseolus vulgaris var. aborigineus (Fabaceae. Evidencias que indican hibridación natural

    Directory of Open Access Journals (Sweden)

    Patricia S Hoc

    2003-09-01

    Full Text Available Se estudió una población polimórfica de Phaseolus vulgaris var. aborigineus que crece en el Noroeste de Argentina. Para dilucidar el origen de este polimorfismo fueron coleccionadas algunas plantas que pertenecían a la var. aborigineus, otras que exhibían dimorfismo floral y plantas que presentaban ciertos caracteres particulares. Luego de realizarles tratamientos de fecundación libre y autopolinización, se sembraron las semillas producidas en un invernáculo, aisladas del acceso de visitantes potencialmente polinizadores. Se siguió el crecimiento de cada planta hasta su fructificación. Se registró el número de plantas que se murieron debido a las infecciones. El número de plantas que florecieron y fructificaron fue registrado con el fin de estudiar su éxito reproductivo. Se analizaron los caracteres florales y se realizaron mediciones de las legumbres y sus semillas. Con los resultados obtenidos, las autoras concluyeron que los individuos que exhibían el dimorfismo floral probablemente sean el resultado de hibridación e introgresión entre la var. aborigineus y cultivares primitivos. Esta hipótesis se sustenta por la presencia de segregación divergente, observada en la descendencia que exhibía esta segregación. Otros cultivares permiten un flujo génico entre las entidades parentales, con la consecuencia del establecimiento de una población híbrida coexistente con sus entidades parentales. Quizás como resultado de la introgresión, los ejemplares de la línea con características diferenciales exhiben caracteres diferentes a los de sus progenitores. Los resultados de la autopolinización y de la fecundación libre en los individuos asignados a lavar. aborigineus, demuestran que la fecundación libre aporta una gran plasticidad genética, porque las generaciones posteriores persisten y son resistentes a las infecciones. Se hizo un seguimiento de la descendencia de la F1. Las plantas que pertenecían a la var. aborigineus

  11. Effect of phenolic compounds and osmotic stress on the expression of penicillin biosynthetic genes from Penicillium chrysogenum var. halophenolicum strain

    Directory of Open Access Journals (Sweden)

    Sumaya Ferreira Guedes

    2012-01-01

    Full Text Available Phenol and phenolic compounds are aromatic pollutants that inhibit biological treatment of wastewaters. Penicillium chrysogenum var. halophenolicum is a halotolerant fungus that previously showed the ability to degrade phenol and resorcinol in high salinity conditions. The presence of the penicillin biosynthetic cluster in P. chrysogenum var. halophenolicum was recently described. In this article, we examined the expression of pcbAB, pcbC and penDE, genes responsible for δ-(L-α-aminoadipyl-L-cysteinyl-D-valine synthetase, isopenicillin N synthase and isopenicillin N acyltransferase activities, respectively, in P. chrysogenum var. halophenolicum. A quantitative PCR (qPCR approach was used to determine how these genes were expressed in media with 2% and 5.9% NaCl supplemented with phenol, catechol, hydroquinone and resorcinol as the sole carbon source. The effect of salt on the capability of P. chrysogenum var. halophenolicum to degrade aromatic compounds was measured using HPLC. qPCR analysis of RNA extracted from P. chrysogenum var. halophenolicum indicated that the expression levels of pcbAB, pcbC and penDE decreased in high saline concentrations compared to the levels expressed in media with glucose. High concentrations of salt significantly repress the expression of pcbAB and penDE. The pcbC gene was expressed differentially in catechol containing medium. There was no evident relationship between the expression levels of penicillin biosynthetic genes and yields of penicillin. Meanwhile, the presence of phenol and phenolic compounds seems to positively influence the antibiotic production; high concentrations of salt stimulated penicillin production. These results support the hypothesis that phenol, phenolic compounds and high concentrations of salt could act like a stress factor for P. chrysogenum var. halophenolicum resulting in higher yields of β-lactam antibiotic production.

  12. Understanding mechanisms of rarity in pteridophytes: competition and climate change threaten the rare fern Asplenium scolopendrium var. americanum (Aspleniaceae).

    Science.gov (United States)

    Testo, Weston L; Watkins, James E

    2013-11-01

    Understanding the ecology of rare species can inform aspects of conservation strategies; however, the mechanisms of rarity remain elusive for most pteridophytes, which possess independent and ecologically distinct gametophyte and sporophyte generations. To elucidate factors contributing to recent declines of the rare fern Asplenium scolopendrium var. americanum, we studied the ecology and ecophysiology of its gametophyte generation, focusing on responses to competition, temperature, and water stress. Gametophytes of A. scolopendrium var. americanum, its widespread European relative A. scolopendrium var. scolopendrium, and five co-occurring fern species were grown from spores. Gametophytes were grown at 20°C and 25°C, and germination rates, intra- and interspecific competition, desiccation tolerance, and sporophyte production were determined for all species. Gametophytes of A. scolopendrium var. americanum had the lowest rates of germination and sporophyte production among all species studied and exhibited the greatest sensitivity to interspecific competition, temperature increases, and desiccation. Mature gametophytes of A. scolopendrium var. americanum grown at 25°C were 84.6% smaller than those grown at 20°C, and only 1.5% produced sporophytes after 200 d in culture. Similar responses were not observed in other species studied. The recent declines and current status of populations of A. scolopendrium var. americanum are linked to its gametophyte's limited capacity to tolerate competition and physiological stress linked to climate change. This is the first study to develop a mechanistic understanding of rarity and decline in a fern and demonstrates the importance of considering the ecology of the gametophyte in plants with independent sporophyte and gametophyte generations.

  13. Descripción de una nueva especie de Ctenodecticus Bolívar, 1876, de Sierra Nevada, España (Orthoptera, Tettigoniidae, Decticinae)

    NARCIS (Netherlands)

    Pascual, Felipe

    1978-01-01

    A new species of the genus Ctenodecticus Bolívar, Ct. granatensis n. sp., from the Sierra Nevada, Spain, is described. It is compared with Ct. masferreri Bolívar, and a key to the Iberian species of the genus is given.

  14. The effect of adjuvants on the immune response induced by a DBL4e-ID4 VAR2CSA based Plasmodium falciparum vaccine against placental malaria

    DEFF Research Database (Denmark)

    Pinto, V V; Salanti, A; Joergensen, L M

    2012-01-01

    A vaccine protecting women against placental malaria could be based on the sub-domains of the VAR2CSA antigen, since antibodies against the DBL4¿-ID4 subunit of the VAR2CSA protein can inhibit parasite binding to the placental ligand chondroitin sulphate A (CSA). Here we tested the ability of DBL4...

  15. Positive selection of Plasmodium falciparum parasites with multiple var2csa-type PfEMP1 genes during the course of infection in pregnant women.

    Science.gov (United States)

    Sander, Adam F; Salanti, Ali; Lavstsen, Thomas; Nielsen, Morten A; Theander, Thor G; Leke, Rose G F; Lo, Yeung Y; Bobbili, Naveen; Arnot, David E; Taylor, Diane W

    2011-06-01

    Placental malaria infections are caused by Plasmodium falciparum-infected red blood cells sequestering in the placenta by binding to chondroitin sulfate A, mediated by VAR2CSA, a variant of the PfEMP1 family of adhesion antigens. Recent studies have shown that many P. falciparum genomes have multiple genes coding for different VAR2CSA proteins, and parasites with >1 var2csa gene appear to be more common in pregnant women with placental malaria than in nonpregnant individuals. We present evidence that, in pregnant women, parasites containing multiple var2csa-type genes possess a selective advantage over parasites with a single var2csa gene. Accumulation of parasites with multiple copies of the var2csa gene during the course of pregnancy was also correlated with the development of antibodies involved in blocking VAR2CSA adhesion. The data suggest that multiplicity of var2csa-type genes enables P. falciparum parasites to persist for a longer period of time during placental infections, probably because of their greater capacity for antigenic variation and evasion of variant-specific immune responses.

  16. Sub-grouping of Plasmodium falciparum 3D7 var genes based on sequence analysis of coding and non-coding regions

    DEFF Research Database (Denmark)

    Lavstsen, Thomas; Salanti, Ali; Jensen, Anja T R

    2003-01-01

    -grouped into three major groups (group A, B and C) and two intermediate groups B/A and B/C representing transitions between the three major groups. The best defined var group, group A, comprises telomeric genes transcribed towards the telomere encoding PfEMP1s with complex domain structures different from the 4...... and organization of the 3D7 PfEMP1 repertoire was investigated on the basis of the complete genome sequence. METHODS: Using two tree-building methods we analysed the coding and non-coding sequences of 3D7 var and rif genes as well as var genes of other parasite strains. RESULTS: var genes can be sub......-domain type dominant of groups B and C. Two sequences belonging to the var1 and var2 subfamilies formed independent groups. A rif subgroup transcribed towards the centromere was found neighbouring var genes of group A such that the rif and var 5' regions merged. This organization appeared to be unique...

  17. A novel virus-like particle based vaccine platform displaying the placental malaria antigen VAR2CSA

    DEFF Research Database (Denmark)

    Thrane, Susan; Janitzek, Christoph M; Agerbæk, Mette Ø

    2015-01-01

    Placental malaria caused by Plasmodium falciparum is a major cause of mortality and severe morbidity. Clinical testing of a soluble protein-based vaccine containing the parasite ligand, VAR2CSA, has been initiated. VAR2CSA binds to the human receptor chondroitin sulphate A (CSA) and is responsible...... for sequestration of Plasmodium falciparum infected erythrocytes in the placenta. It is imperative that a vaccine against malaria in pregnancy, if administered to women before they become pregnant, can induce a strong and long lasting immune response. While most soluble protein-based vaccines have failed during...

  18. Molecular dissection of placental malaria protein VAR2CSA interaction with a chemo-enzymatically synthesized chondroitin sulfate library

    DEFF Research Database (Denmark)

    Sugiura, Nobuo; Clausen, Thomas Mandel; Shioiri, Tatsuasa

    2016-01-01

    Placental malaria, a serious infection caused by the parasite Plasmodium falciparum, is characterized by the selective accumulation of infected erythrocytes (IEs) in the placentas of the pregnant women. Placental adherence is mediated by the malarial VAR2CSA protein, which interacts......-sulfated CSA dodecasaccharide, and found that a highly sulfated CSA eicosasaccharide is a more potent inhibitor of rVAR2 binding than the dodecasaccharides. These results suggest that CSA derivatives may potentially serve as targets in therapeutic strategies against placental malaria....

  19. Triatominos (Reduviidae: Triatominae) en un foco de enfermedad de Chagas en Talaigua Nuevo (Bolívar, Colombia).

    OpenAIRE

    Luis Alberto Corté; Henry Alberto Suárez

    2005-01-01

    Introducción. Se describen las características e importancia epidemiológica de los triatominos presentes en un foco de enfermedad de Chagas en el municipio de Talaigua Nuevo, departamento de Bolívar. Objetivo. Determinar y correlacionar características ecológicas de los triatominos presentes en un foco de Chagas en el municipio de Talaigua Nuevo, Bolívar. Materiales y métodos. La captura de los triatominos se realizó en 300 domicilios del casco urbano en los que se revisaron el intra y perido...

  20. Metabolites from roots of Colubrina greggii var. yucatanensis and evaluation of their antiprotozoan, cytotoxic and antiproliferative activities

    Energy Technology Data Exchange (ETDEWEB)

    Dominguez-Carmona, Dafne B.; Escalante-Erosa, Fabiola; Garcia-Sosa, Karlina; Pena-Rodriguez, Luis M., E-mail: lmanuel@cicy.m [Centro de Investigacion Cientifica de Yucatan (Mexico). Unidad de Biotecnologia; Ruiz-Pinell, Grace; Gutierrez-Yapu, David; Gimenez-Turba, Alberto [Universidad Mayor de San Andres, La Paz (Bolivia, Plurinational State of). Inst. de Investigaciones Farmaco-Bioquimicas; Chan-Bacab, Manuel J. [Universidad Autonoma de Campeche (Mexico). Dept. de Microbiologia Ambiental y Biotecnologia; Moo-Puc, Rosa E. [Centro Medico Ignacio Garcia Tellez, Col. Industrial, Merida, Yucatan (Mexico). Unidad de Investigacion Medica Yucatan y Unidad Medica de Alta Especialidad; Veitch, Nigel C. [Jodrell Laboratory, Richmond, Surrey (United Kingdom)

    2011-07-01

    Purification of the root extract of Colubrina greggii var. yucatanensis resulted in the isolation and identification of 3-O-acetyl ceanothic acid as a new natural ceanothane triterpene, together with the known metabolites ceanothic acid, cenothenic acid, betulinic acid, discarine B and chrysophanein. The natural products and the semisynthetic esters acetyl dimethyl ceanothate, dimethyl ceanothate and chrysophanein peracetate showed moderate to low leishmanicidal and trypanocidal activities. None of the metabolites showed cytotoxic or antiproliferative effects. The results also suggested that betulinic acid contributes to the antiplasmodial activity originally detected in the crude root extract of C. greggii var. yucatanensis. (author)

  1. El ferrocarril de Bolívar y la consolidación del puerto de Barranquilla

    OpenAIRE

    Correa Restrepo, Juan Santiago

    2012-01-01

    Este trabajo analiza la construcción y el funcionamiento del Ferrocarril de Bolívar, que a pesar de su corta extensión dio lugar a procesos económicos que provocaron cambios profundos en el territorio del Bolívar Grande, pues contribuyó al fortalecimiento de una subregión pujante y vinculada al desarrollo económico de la última parte del siglo XIX. El análisis de los contratos para poner en marcha este ferrocarril muestra las debilidades del Estado colombiano frente a los inversionistas, que ...

  2. In vitro inhibitory effect of miltefosine against strains of Histoplasma capsulatum var. capsulatum and Sporothrix spp.

    Science.gov (United States)

    Brilhante, Raimunda Sâmia Nogueira; Malaquias, Angela Donato Maia; Caetano, Erica Pacheco; Castelo-Branco, Débora de Souza Collares Maia; Lima, Rita Amanda Chaves de; Marques, Francisca Jakelyne de Farias; Silva, Natalya Fechine; Alencar, Lucas Pereira de; Monteiro, André Jalles; Camargo, Zoilo Pires de; Bandeira, Tereza de Jesus Pinheiro Gomes; Rodrigues, Anderson Messias; Cordeiro, Rossana de Aguiar; Moreira, José Luciano Bezerra; Sidrim, José Júlio Costa; Rocha, Marcos Fábio Gadelha

    2014-04-01

    Miltefosine (MIL), originally developed for use in cancer chemotherapy, has been shown to have important antifungal activity against several pathogenic fungi. Our aim in this study was to determine the in vitro activity of MIL against the dimorphic fungi Histoplasma capsulatum and Sporothrix spp. This was done using the broth microdilution method. MIL had an in vitro inhibitory effect against all strains of H. capsulatum var. capsulatum and Sporothrix spp. analyzed. The minimal inhibitory concentrations (MIC) varied from 0.25 μg/ml to 2 μg/ml for H. capsulatum var. capsulatum in the filamentous phase and from 0.125 μg/ml to 1 μg/ml in the yeast phase. The MIC interval for Sporothrix spp. in the filamentous phase was 0.25-2 μg/ml. The minimal fungicidal concentrations (MFCs) were ≤4 μg/ml for isolates of both analyzed species. This study demonstrates that MIL has an antifungal effect in vitro against two potentially pathogenic fungi and that more studies should be performed in order to evaluate its applicability in vivo.

  3. Seasonal Variation in Essential oil Composition of Artemisianilagirica var. septentrionalis from Foot Hills of Western Himalaya

    Directory of Open Access Journals (Sweden)

    Rajendra Chandra Padalia

    2014-05-01

    Full Text Available Essential oils composition of the aerial parts of Artemisia nilagirica (Clarke Pamp. var. septentrionalis Pamp. in different seasons viz. spring, summer, rainy, autumn and winter seasons under foot hills agroclimatic conditions of western Himalaya were analyzed and compared by GC–FID and GC–MS. Essential oils were mainly composed of monoterpenoids (59.0%-77.3% and sesquiterpenoids (15.7%-31.6%. The major constituents identified were artemisia ketone (38.3%-61.2%, chrysanthenone (1.5%-7.7%, germacrene D (3.1%-6.8%, β-caryophyllene (1.9%-6.8%, germacra-4,5,10-trien-1-α-ol (1.9%-4.9% and artemisia alcohol (1.4%-3.6%. Compositional analysis showed significant variations in the terpenoid compositions due to seasonal variations. Further, this is for the first time the seasonal variations in essential oil compositions of artemisia ketone rich chemotype of A. nilagirica var. septentrionalis is being reported from India.

  4. A VAR2CSA:CSP conjugate capable of inducing dual specificity antibody responses

    DEFF Research Database (Denmark)

    Matondo, Sungwa; Thrane, Susan; Janitzek, Christoph Mikkel

    2017-01-01

    Background: Vaccine antigens targeting specific P. falciparum parasite stages are under pre-clinical and clinical development. It seems plausible that vaccine with multiple specificities will offer higher protection. With this hypothesis, we exploited the Spy-Tag/SpyCatcher conjugation system...... to make a, post expression, dual antigen conjugate vaccine, comprising two clinically tested antigen candidates (CSP and VAR2CSA).  Methods: The DBL1x-DBL2x-ID2a region of VAR2CSA was genetically fused with SpyTag at N-terminus. The full-length CSP antigen was genetically fused to C-terminal Spy......Catcher peptide. The covalent interaction between SpyTag/SpyCatcher enables the formation of DBL1x-DBL2x-ID2a:CSP conjugate vaccine. Immunogenicity and quality of antibody responses induced by the conjugate vaccine, as well as a control CSP-SpyCatcher vaccine, was tested in BALB/c mice.  Results: Serum samples...

  5. Komunitas Nematoda pada Tanaman Kopi (Coffea Canephora Var. Robusta Muda di Kabupaten Tanggamus Lampung

    Directory of Open Access Journals (Sweden)

    I GEDE SWIBAWA

    2015-09-01

    Full Text Available The Community of Nematode in The Young Coffee ( Coffea Canephora Var. Robusta Crops in Tanggamus District, Lampung. Tanggamus district is one of coffee production center in Lampung province. Since year of 2013, farmers in Tanggamus have been replaced the unproductive old coffee by coffee seed introduced from East Java. Introducing coffe seed from outside area at risk of carrying plant parasitic nematodes. The purpose of this research was to study community of nematode associated with young coffee crops in Tanggamus. Survey was conducted in coffee robusta (Coffea canephora var. robusta fields belonging to farmer on September 2014. Soil samples were collected from three sites: Margo Mulyo, Sumber Rejo and Batu Bedil. Nematodes were extracted by sieving and centrifugation with sugar solution method. The results show that were 20 genera consisted of 9 genera of plant parasitic and 11 genera of free living nematodes associated with young coffee in Tanggamus. The nematode community was dominated by Pratylenchus and Radopholus. The population of Pratylenchus and Radopholus in Sumber Rejo site were 421 and 846 individual per 300 ml of soil respectively. It was needed to indentify up to species taxonomic level for Pratylenchus and Radopholus associated with young coffee in Tanggamus.

  6. The occurrence and pathogenicity of Phoma exigua Desm. var. exigua for selected species of herbs

    Directory of Open Access Journals (Sweden)

    Zofia Machowicz-Stefaniak

    2012-12-01

    Full Text Available P. exigua var. exigua was isolated from underground and aboveground organs of different herb plant species in the years 1998-2006. Pathogenicity tests of three randomly chosen isolates of the fungus T 299, T 261 and T 277 for thyme and of three isolates M 1657, M 1193 and M 1635 for lemon balm were carried out. The effect of water suspension of fungus spores on the germination ability of schizocarps and of infected soil on sprouting and seedling health was studied. The study of microscopic structures of the fungus developing on plants, isolation of the fungus on artificial media and macro- and microscopic analysis on standard media are essential for the correct identification of P. exigua var. exigua. The polyphagous nature of the fungus is confirmed by the obtained results. The tested isolates were found to be occasional pathogens of thyme and lemon balm in the studied conditions. The harmfulness of the tested isolates pointed to inhibition of schizocarp germination, sprouting of plants and the ability to cause necrosis of germs, roots and epicotyl.

  7. Volt/VAr Optimization of Distribution System with Integrated Distributed Generation

    Directory of Open Access Journals (Sweden)

    MARIAM MUGHEES

    2017-01-01

    Full Text Available This paper addresses the issues of VVO (Volt/VAr Optimization such as loss minimization, acceptable voltage profiles and optimized number of switching operations. Basic function of the DMS (Distribution Management System is to upgrade system intelligence so that it can make dynamic decisions and control the network in realtime. Distributed generators can cause the system to operate above and below the desired limits due to their variable nature. Therefore, devices like SC (Shunt Capacitors and OLTC (On Load Tap Changers are used in distribution system as control devices. Main focus of this paper is to inspect effects of DG (Distributed Generation on switching states of control devices while considering Volt/VAr standards. An optimization search algorithm is employed to search the optimal solution considering the system constraints. The GA (Genetic Algorithm is used for the optimization process of the system and the simulation is done in MATLAB using IEEE-30 bus system with DG under 24 hour changing load profiles. By setting up constraints of distribution system?s voltage limits, capacitor bank and OLTC, losses are minimized up to 50%. Merits of the proposed optimized method are demonstrated through simulation results .The result achieved from the proposed technique has proven to be beneficial for switching optimization of control devices under variant conditions of loads and distributed generation

  8. First Report of Cucumber mosaic virus Isolated from Wild Vigna angularis var. nipponensis in Korea

    Directory of Open Access Journals (Sweden)

    Mi-Kyeong Kim

    2014-06-01

    Full Text Available A viral disease causing severe mosaic, necrotic, and yellow symptoms on Vigna angularis var. nipponensis was prevalent around Suwon area in Korea. The causal virus was characterized as Cucumber mosaic virus (CMV on the basis of biological and nucleotide sequence properties of RNAs 1, 2 and 3 and named as CMV-wVa. CMV-wVa isolate caused mosaic symptoms on indicator plants, Nicotiana tabacum cv. Xanthi-nc, Petunia hybrida, and Cucumis sativus. Strikingly, CMV-wVa induced severe mosaic and malformation on Cucurbita pepo, and Solanum lycopersicum. Moreover, it caused necrotic or mosaic symptoms on V. angularis and V. radiate of Fabaceae. Symptoms of necrotic local or pin point were observed on inoculated leaves of V. unguiculata, Vicia fava, Pisum sativum and Phaseolus vulgaris. However, CMV-wVa isolate failed to infect in Glycine max cvs. ‘Sorok’, ‘Sodam’ and ‘Somyeong’. To assess genetic variation between CMV-wVa and the other known CMV isolates, phylogenetic analysis using 16 complete nucleotide sequences of CMV RNA1, RNA2, and RNA3 including CMV-wVa was performed. CMV-wVa was more closely related to CMV isolates belonging to CMV subgroup I showing about 85.1–100% nucleotide sequences identity to those of subgroup I isolates. This is the first report of CMV as the causal virus infecting wild Vigna angularis var. nipponensis in Korea.

  9. Inhibitory Effect of Chrysanthemum zawadskii Herbich var. latilobum Kitamura Extract on RANKL-Induced Osteoclast Differentiation

    Directory of Open Access Journals (Sweden)

    Dong Ryun Gu

    2013-01-01

    Full Text Available Chrysanthemum zawadskii Herbich var. latilobum Kitamura, known as “Gujulcho” in Korea, has been used in traditional medicine to treat various inflammatory diseases, including rheumatoid arthritis. However, these effects have not been tested on osteoclasts, the bone resorbing cells that regulate bone metabolism. Here, we investigated the effects of C. zawadskii Herbich var. latilobum Kitamura ethanol extract (CZE on osteoclast differentiation induced by treatment with the receptor activator of NF-κB ligand (RANKL. CZE inhibited osteoclast differentiation and formation in a dose-dependent manner. The inhibitory effect of CZE on osteoclastogenesis was due to the suppression of ERK activation and the ablation of RANKL-stimulated Ca2+-oscillation via the inactivation of PLCγ2, followed by the inhibition of CREB activation. These inhibitory effects of CZE resulted in a significant repression of c-Fos expression and a subsequent reduction of NFATc1, a key transcription factor for osteoclast differentiation, fusion, and activation in vitro and in vivo. These results indicate that CZE negatively regulates osteoclast differentiation and may be a therapeutic candidate for the treatment of various bone diseases, such as postmenopausal osteoporosis, rheumatoid arthritis, and periodontitis.

  10. ANALISIS WAKTU PEMUPUKAN TANAMAN SAWI HIJAU (Brassica rapa var. parachinensis DENGAN TEKNIK PERUNUT RADIOAKTIF

    Directory of Open Access Journals (Sweden)

    Gusti Ngurah Sutapa

    2016-06-01

    Full Text Available Telah dilakukan penelitian analisis waktu pemupukan pada tanaman sawi hijau (Brassica rapa var. parachinensisdengan teknik perunut radioaktif. Untuk menuju sistem pertanian berkelanjutan perlu adanya perbaikan pertanian(intensifikasi selama beberapa tahun yang lalu masih signifikan, karena ketersediaan sumber daya alam danteknologi pertanian cukup memadai dan berimbang dengan ketersediaan lahan dan peningkatan jumlah penduduk.Keadaan ini sulit untuk dipertahankan dimasa yang akan datang, kecuali ada pendekatan baru yang menawarkan ide dan teknik untuk meningkatkan produktifitas pertanian. Efesiensi pemupukan tanaman dengan teknik perunut (tracer radioisotop adalah salah satu potensi menujusistem pertanian berkelanjutan. Teknik perunut dapat digunakan antara lain untuk mempelajari hubungan antaratanah dan tanaman, menentukan kondisi optimal dalam penggunaan pupuk (waktu pemupukan, pola perakaranaktif tanaman, jenis dan takaran pupuk, mempelajari proses dekomposisi dan mineralisasi bahan organik, sertamempelajari proses fotosintesis tanaman,baik dengan metoda langsung maupun tidak langsung.Waktu pemupukanyang lebih tepat dapat ditentukan dengan teknik perunut tersebut, sehingga optimalisasi pemupukan dapat dicapai,tanpa pemborosan yang tidak berguna.Dari penelitian dengan menggunakan radioisotop P, ternyata waktupemupukan pada tanaman sawi hijau (Brassica rapa var. parachinensis yang paling signifikan adalah padapukul 9.00 pagi. Waktu siang hari mulai pukul 11.00 sampai pukul 15.00 adalah waktu pemupukan yang sangatburuk. Sedangkan waktu sore hari yaitu pukul 15.00 sampai 17.00 menunjukkan waktu pemupukan yang semakinbaik namun tidak signifikan.32

  11. ANALISIS WAKTU PEMUPUKAN TANAMAN SAWI HIJAU (Brassica rapa var. parachinensis DENGAN TEKNIK PERUNUT RADIOAKTIF

    Directory of Open Access Journals (Sweden)

    Gusti Ngurah Sutapa

    2016-11-01

    Full Text Available Telah dilakukan penelitian analisis waktu pemupukan pada tanaman sawi hijau (Brassica rapa var. parachinensisdengan teknik perunut radioaktif. Untuk menuju sistem pertanian berkelanjutan perlu adanya perbaikan pertanian(intensifikasi selama beberapa tahun yang lalu masih signifikan, karena ketersediaan sumber daya alam danteknologi pertanian cukup memadai dan berimbang dengan ketersediaan lahan dan peningkatan jumlah penduduk.Keadaan ini sulit untuk dipertahankan dimasa yang akan datang, kecuali ada pendekatan baru yang menawarkan ide dan teknik untuk meningkatkan produktifitas pertanian. Efesiensi pemupukan tanaman dengan teknik perunut (tracer radioisotop adalah salah satu potensi menujusistem pertanian berkelanjutan. Teknik perunut dapat digunakan antara lain untuk mempelajari hubungan antaratanah dan tanaman, menentukan kondisi optimal dalam penggunaan pupuk (waktu pemupukan, pola perakaranaktif tanaman, jenis dan takaran pupuk, mempelajari proses dekomposisi dan mineralisasi bahan organik, sertamempelajari proses fotosintesis tanaman,baik dengan metoda langsung maupun tidak langsung.Waktu pemupukanyang lebih tepat dapat ditentukan dengan teknik perunut tersebut, sehingga optimalisasi pemupukan dapat dicapai,tanpa pemborosan yang tidak berguna.Dari penelitian dengan menggunakan radioisotop P, ternyata waktupemupukan pada tanaman sawi hijau (Brassica rapa var. parachinensis yang paling signifikan adalah padapukul 9.00 pagi. Waktu siang hari mulai pukul 11.00 sampai pukul 15.00 adalah waktu pemupukan yang sangatburuk. Sedangkan waktu sore hari yaitu pukul 15.00 sampai 17.00 menunjukkan waktu pemupukan yang semakinbaik namun tidak signifikan.32

  12. Isolation and characterization of microsatellite loci from an endangered tree species, Toona ciliata var. pubescens.

    Science.gov (United States)

    Liu, J; Sun, Z-X; Chen, Y-T; Jiang, J-M

    2012-12-17

    Toona ciliata var. pubescens is considered an endangered tree species native to China. In order to help develop a conservation program for this species, we evaluated its genetic diversity and population genetics. We isolated microsatellite DNA loci using streptavidin beads. A genomic library, enriched with microsatellites, was constructed and screened by sequencing. We detected 8 polymorphic microsatellite loci from the tree tissue samples. The population of T. ciliata var. pubescens used in this study is located within the Guanshan National Nature Reserve, Jiangxi Province, China. Sixty-five individuals were collected for the study. The Guanshan population was split into two subpopulations due to terrain. The number of alleles per locus ranged from 2 to 6, with expected heterozygosity from 0.2386 to 0.6772. Four of the 8 loci, except loci Tc02, Tc04, Tc05, and Tc07 showed no significant departure from Hardy-Weinberg equilibrium. The mean observed heterozygosity was 0.59. The average coefficient of genetic differentiation between the two subpopulations was quite low (F(ST) = 0.0235). The level of gene flow (N(m)) was 10.39, reflecting a high degree of gene flow between the two subpopulations.

  13. Glaucasides A-C, three saikosaponins from Atriplex glauca L. var. ifiniensis (Caball) Maire.

    Science.gov (United States)

    Jabrane, Aymen; Ben Jannet, Hichem; Miyamoto, Tomofumi; Tanaka, Chiaki; Mirjolet, Jean-François; Duchamp, Olivier; Harzallah-Skhiri, Féthia; Lacaille-Dubois, Marie-Aleth

    2011-02-01

    From the roots of Atriplex glauca L. var. ifiniensis (Caball) Maire (syn. of Atriplex parvifolia Lowe var. genuina Maire), three new saikosaponins designated as glaucasides A-C (1-3) were isolated together with the known 3-O-β-D-glucopyranosyl-(1 → 2)-β-D-galactopyranosyl-saikogenin F (4). The structures of the new compounds were elucidated by extensive analysis of one-dimensional and two-dimensional NMR spectroscopy, FABMS, HR-ESIMS and chemical evidence as 13β,28-epoxy-16β,21β-dihydroxyolean-11-en-3β-yl O-β-D-[2-O-sulfate]-glucopyranosyl-(1 → 2)-α-L-arabinopyranoside (1), 13β,28-epoxy-16β,21β-dihydroxyolean-11-en-3β-yl O-β-D-[2-O-sulfate]-glucopyranosyl-(1 → 2)-α-L-arabinopyranosyl 21-O-{4-(secbutylamido)-butanoyl ester} (2) and 3-O-β-D-glucopyranosyl-(1 → 2)-β-D-galactopyranosyl saikogenin G (3). The cytotoxic activities of these compounds were evaluated against the HT-29 and HCT 116 human colon cancer cell lines. Copyright © 2011 John Wiley & Sons, Ltd.

  14. [HPLC fingerprints of tibetan medicinal herb "songdi" (Saxifraga umbellulata var. pectinata)].

    Science.gov (United States)

    Fei, Yao; Zhong, Guo-Yue; Jiang, Wei

    2014-07-01

    The research was carried out to establish HPLC fingerprints of Tibetan medicinal herb "Songdi" (Saxifraga umbellulata var. pectinata), and to provide reference for identification an quality control of it. It was performed on an Amethyst-C18-P (4.6 mm x 250 mm, 5 microm) column with the mobile phase of methanol-0.4% formic acid in a linear gradient mode at a flow rate of 1.0 mL x min(-1). The column temperature was 30 degrees C, and the detection wavelength was set at 254 nm. The software for chromatographic fingerprint was applied to analyse the pattern analysis, the common peaks and similarity. Cluster analysis was done based on the common peaks data of 33 samples from different plant species and sources by SPSS software. Ten common chromatographic peaks were identified by fingerprint, showing a low similarity in constituent and variety. Flavonoids and saponins were the principal components. The number and area of peaks were affected by the collection sources and method. The high similarity are showed by the samples derived from the same area with high accuracy and high purity. The method is so simple, exclusive, stable and high repeatable that it can provide reference for identification and quality assessment of "Songdi" (S. umbellulata var. pectinata).

  15. Rabdosia japonica var. glaucocalyx Flavonoids Fraction Attenuates Lipopolysaccharide-Induced Acute Lung Injury in Mice

    Directory of Open Access Journals (Sweden)

    Chun-jun Chu

    2014-01-01

    Full Text Available Rabdosia japonica var. glaucocalyx (Maxim. Hara, belonging to the Labiatae family, is widely used as an anti-inflammatory and antitumor drug for the treatment of different inflammations and cancers. Aim of the Study. To investigate therapeutic effects and possible mechanism of the flavonoids fraction of Rabdosia japonica var. glaucocalyx (Maxim. Hara (RJFs in acute lung injury (ALI mice induced by lipopolysaccharide (LPS. Materials and Methods. Mice were orally administrated with RJFs (6.4, 12.8, and 25.6 mg/kg per day for 7 days, consecutively, before LPS challenge. Lung specimens and the bronchoalveolar lavage fluid (BALF were isolated for histopathological examinations and biochemical analysis. The level of complement 3 (C3 in serum was quantified by a sandwich ELISA kit. Results. RJFs significantly attenuated LPS-induced ALI via reducing productions of the level of inflammatory mediators (TNF-α, IL-6, and IL-1β, and significantly reduced complement deposition with decreasing the level of C3 in serum, which was exhibited together with the lowered myeloperoxidase (MPO activity and nitric oxide (NO and protein concentration in BALF. Conclusions. RJFs significantly attenuate LPS-induced ALI via reducing productions of proinflammatory mediators, decreasing the level of complement, and reducing radicals.

  16. Evaluation of antinociceptive and antiinflammatory effects of Croton pullei var. glabrior Lanj. (Euphorbiaceae

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    Fábio F. Rocha

    Full Text Available Croton pullei var. glabrior Lanj. (Euphorbiaceae is a liana, vastly distributed in the Amazonian Forest. In the folk medicine, several plants of the Croton genus have been used with therapeutic purposes in pathologies that involve painful and inflammatory diseases which justify this work. The aim of this study was to investigate the antinociceptive and antiinflammatory activities of the C. pullei leaves methanol extract (MECP. MECP reduced in a dose-dependent manner the number of acetic acid-induced abdominal writhing (1.2% in mice, suggesting an antinociceptive activity of the plant. On the other hand, MECP did not significantly modify the reactivity to the thermal stimulation in the hot-plate test and the reactivity to the chemical stimulation in the formalin test first phase, indicating a non-opioid mechanism. MECP reduced the formalin-induced nociception in the second phase, inhibited the croton oil-induced ear edema and reduced the leukocytes migration in the test of the carrageenan-induced peritonitis, indicating an antiinflammatory activity. Although the mechanisms that underlie these plant effects are not completely elucidated, these results appear to support the potential medicinal use of Croton pullei var. glabrior Lanj. against painful and inflammatory diseases.

  17. Recycling of Date-Palm Fiber to Produce Pleurotus Cornucopiae Var. Citrinopileatus Mushroom

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    Mustafa Nadhim Owaid

    2017-01-01

    Full Text Available In this study, some local available organic matters, which are including wheat straw (Triticum aestivum, sawdust, and fiber of date palm (Phoenix dactylifera L., were used for growing and cultivating of bright yellow oyster mushroom Pleurotus cornucopiae var. citrinopileatus. The possibility of using date palm fiber (in mixtures with other organic residues as a substrate for the cultivation and production of fruiting bodies of P. cornucopiae var. citrinopileatus was investigated. This mushroom is capable of biorecycling and utilization of some mixtures of lignocellulosic substrates successfully, especially the mixture S3 (50% wheat straw, 30% sawdust, and 20% date palm fiber. The lower mycelia completion time was 17 days, that shown in bags of the S3 substrate. Date-palm fiber substrate exhibited best growth intensity level (moderate significantly (p<0.05. The total yield and biological efficiency percent recorded approx. 90 g and 23% on the S3 substrate respectively, as a higher percent significantly (p<0.05, while sawdust substrate alone was an unsuitable medium for cultivation and production of this mushroom. Finally, the use of date-palm fibers in mixtures is usefulness in producing a fresh edible and medicinal mushroom.INTERNATIONAL JOURNAL OF ENVIRONMENTVolume-5, Issue-4, Sep-Nov 2016, page: 56-65

  18. OPTIMASI FORMULA TABLET EFFERVESCENT EKSTRAK RIMPANG JAHE MERAH (Zingiber officinale Roxb. Var rubrum

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    Henny Dwi Arini

    2012-11-01

    Full Text Available Abstract:This study aims to determine the effect of sodium citrate and fumaric acid as a source of acid in the tablet formula effervescent red ginger rhizome extract (Zingiber officinale Roxb. var rubrum and obtain the optimum composition of the formula that has the physical properties of tablet effervescent red ginger rhizome extract (Zingiber officinale Roxb. var rubrum that meet the requirements. Optimization techniques used in research is a method of factorial design with two factors and two levels of sodium citrate and fumaric acid with low levels of 80 mg, and high levels of 120 mg. Responses were observed to obtain optimum formula is hardness, friability, and the soluble tablet (effervescent time. The result is the concentration of sodium citrate and fumaric acid did not significantly affect tablet hardness effervescent. Meanwhile, that is significantly influences the friability and time effervescent soluble tablets. However, the interaction between sodium citrate and fumaric acid did not significantly affect the hardness, friability, and the soluble tablet effervescent red giinger extract. Optimum formula tablets obtained effervescent namely sodium citrate 80 mg and 80 mg of fumaric acid with 6,529 kgf response tablet hardness, tablet friability 0,1354%, and effervescent time of 5,98 minutes. Key words : Red ginger, effervescent tablet, factorial design

  19. Somaclonal variation of sugar beet resistant to pathogenic root rot Fusarium oxysporum var. orthoceras

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    Urazaliev Kairat

    2013-01-01

    Full Text Available Sugar beet (Beta vulgaris L. - one of the most important crop in the world. In Kazakhstan, it is a traditional and major source of domestic sugar. The industry of cultivation and production of sugar beet is one of the priority areas of agricultural development of the country. In this paper, we studied the regeneration ability of different genotypes of sugar beet explants on selective media with the culture filtrate of the pathogen fungus F. oxysporum var. orthoceras. From the roots and shoots of sugar beet the pathogen Fusarium root rot was isolated. Was obtained pure cultures of the isolated pathogen. As a result, of morphological and cultural descriptions, as well as microbiological analysis it was revealed that the isolated pathogen is Fusarium Oxysporum. The results showed the pathogenicity of the fungus. For regeneration in vitro of the sugar beet genotypes resistant to the pathogen the culture media was optimized to the culture filtrate of the fungus F. oxysporum var. orthoceras. The frequency of shoot regeneration, depending on the genotype, was 1,0-12,5 %. On these explants the multiple shoot formations were observed.

  20. Comportamiento de peces dulceacuicolas en contacto con Salmonella enteritidis var. danysz, La Habana, Cuba

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    Natividad Hernández

    2014-06-01

    Full Text Available Se evaluó durante 6 meses el comportamiento de 13 especies de peces de la fauna dulceacuícola cubana, que fueron puestas en contacto con Salmonella enteritidis var danyz en concentración de 10 8 ufc/mL. En la evaluación se utilizaron los alevinos y juveniles procedentes de reservorios naturales, de la Estación de Guanímar y de Manpostón, ubicadas en Batabanó, Gaunímar, Guajaibón y La Lisa (Ciudad de la Habana. Antes de los ensayos, los peces fueron sometidos a 15 días de adaptación al cautiverio. Durante las evaluaciones, se registraron los parámetros fisicoquímicos del agua de los acuarios, detectándose incremento en los valores de nitritos y nitratos después de 48 horas de haberse colocado el inóculo. Se registraron los valores extremos de talla y peso de los peces, que comparados con el grupo control no evidenciaron diferencias significativas y al finalizar el ensayo todos los peces presentaron aspecto físico normal; por lo que se determinó que la dosis utilizada de Salmonella enteritidis var. danysz fue inocua para las diferentes especies de peces.