Experimental Manipulation of Grassland Plant Diversity Induces Complex Shifts in Aboveground Arthropod Diversity.

Science.gov (United States)

Hertzog, Lionel R; Meyer, Sebastian T; Weisser, Wolfgang W; Ebeling, Anne

2016-01-01

Changes in producer diversity cause multiple changes in consumer communities through various mechanisms. However, past analyses investigating the relationship between plant diversity and arthropod consumers focused only on few aspects of arthropod diversity, e.g. species richness and abundance. Yet, shifts in understudied facets of arthropod diversity like relative abundances or species dominance may have strong effects on arthropod-mediated ecosystem functions. Here we analyze the relationship between plant species richness and arthropod diversity using four complementary diversity indices, namely: abundance, species richness, evenness (equitability of the abundance distribution) and dominance (relative abundance of the dominant species). Along an experimental gradient of plant species richness (1, 2, 4, 8, 16 and 60 plant species), we sampled herbivorous and carnivorous arthropods using pitfall traps and suction sampling during a whole vegetation period. We tested whether plant species richness affects consumer diversity directly (i), or indirectly through increased productivity (ii). Further, we tested the impact of plant community composition on arthropod diversity by testing for the effects of plant functional groups (iii). Abundance and species richness of both herbivores and carnivores increased with increasing plant species richness, but the underlying mechanisms differed between the two trophic groups. While higher species richness in herbivores was caused by an increase in resource diversity, carnivore richness was driven by plant productivity. Evenness of herbivore communities did not change along the gradient in plant species richness, whereas evenness of carnivores declined. The abundance of dominant herbivore species showed no response to changes in plant species richness, but the dominant carnivores were more abundant in species-rich plant communities. The functional composition of plant communities had small impacts on herbivore communities, whereas

Experimental Manipulation of Grassland Plant Diversity Induces Complex Shifts in Aboveground Arthropod Diversity

Science.gov (United States)

Hertzog, Lionel R.; Meyer, Sebastian T.; Weisser, Wolfgang W.; Ebeling, Anne

2016-01-01

Changes in producer diversity cause multiple changes in consumer communities through various mechanisms. However, past analyses investigating the relationship between plant diversity and arthropod consumers focused only on few aspects of arthropod diversity, e.g. species richness and abundance. Yet, shifts in understudied facets of arthropod diversity like relative abundances or species dominance may have strong effects on arthropod-mediated ecosystem functions. Here we analyze the relationship between plant species richness and arthropod diversity using four complementary diversity indices, namely: abundance, species richness, evenness (equitability of the abundance distribution) and dominance (relative abundance of the dominant species). Along an experimental gradient of plant species richness (1, 2, 4, 8, 16 and 60 plant species), we sampled herbivorous and carnivorous arthropods using pitfall traps and suction sampling during a whole vegetation period. We tested whether plant species richness affects consumer diversity directly (i), or indirectly through increased productivity (ii). Further, we tested the impact of plant community composition on arthropod diversity by testing for the effects of plant functional groups (iii). Abundance and species richness of both herbivores and carnivores increased with increasing plant species richness, but the underlying mechanisms differed between the two trophic groups. While higher species richness in herbivores was caused by an increase in resource diversity, carnivore richness was driven by plant productivity. Evenness of herbivore communities did not change along the gradient in plant species richness, whereas evenness of carnivores declined. The abundance of dominant herbivore species showed no response to changes in plant species richness, but the dominant carnivores were more abundant in species-rich plant communities. The functional composition of plant communities had small impacts on herbivore communities, whereas

The impact of plant chemical diversity on plant-herbivore interactions at the community level.

Science.gov (United States)

Salazar, Diego; Jaramillo, Alejandra; Marquis, Robert J

2016-08-01

Understanding the role of diversity in ecosystem processes and species interactions is a central goal of ecology. For plant-herbivore interactions, it has been hypothesized that when plant species diversity is reduced, loss of plant biomass to herbivores increases. Although long-standing, this hypothesis has received mixed support. Increasing plant chemical diversity with increasing plant taxonomic diversity is likely to be important for plant-herbivore interactions at the community level, but the role of chemical diversity is unexplored. Here we assess the effect of volatile chemical diversity on patterns of herbivore damage in naturally occurring patches of Piper (Piperaceae) shrubs in a Costa Rican lowland wet forest. Volatile chemical diversity negatively affected total, specialist, and generalist herbivore damage. Furthermore, there were differences between the effects of high-volatility and low-volatility chemical diversity on herbivore damage. High-volatility diversity reduced specialist herbivory, while low-volatility diversity reduced generalist herbivory. Our data suggest that, although increased plant diversity is expected to reduce average herbivore damage, this pattern is likely mediated by the diversity of defensive compounds and general classes of anti-herbivore traits, as well as the degree of specialization of the herbivores attacking those plants.

Diverse urban plantings managed with sufficient resource availability can increase plant productivity and arthropod diversity

Directory of Open Access Journals (Sweden)

Jonathon eMuller

2014-10-01

Full Text Available Buildings structures and surfaces are explicitly being used to grow plants, and these ‘urban plantings’ are typically designed for aesthetic value. Urban plantings also have the potential to contribute significant ‘ecological values’ by increasing urban habitat for animals such as arthropods and by increasing plant productivity. In this study, we evaluated how the provision of these additional ecological values is affected by plant species richness; the availability of essential resources for plants, such as water, light, space; and soil characteristics. We sampled 33 plantings located on the exterior of three buildings in the urban centre of Brisbane, Australia (subtropical climatic region over two, six week sampling periods characterised by different temperature and rainfall conditions. Plant cover was estimated as a surrogate for productivity as destructive sampling of biomass was not possible. We measured weekly light levels (photosynthetically active radiation, plant CO2 assimilation, soil CO2 efflux, and arthropod diversity.Differences in plant cover were best explained by a three-way interaction of plant species richness, management water regime and sampling period. As the richness of plant species increased in a planter, productivity and total arthropod richness also increased significantly - likely due to greater habitat heterogeneity and quality. Overall we found urban plantings can provide additional ecological values if essential resources are maintained within a planter such as water, light and soil temperature. Diverse urban plantings that are managed with these principles in mind can contribute to the attraction of diverse arthropod communities, and lead to increased plant productivity within a dense urban context.

SMIFH2-mediated mDia formin functional inhibition potentiates chemotherapeutic targeting of human ovarian cancer spheroids.

Science.gov (United States)

Ziske, Megan A; Pettee, Krista M; Khaing, MaNada; Rubinic, Kaitlin; Eisenmann, Kathryn M

2016-03-25

Due to a lack of effective screening or prevention protocol for epithelial ovarian cancer (EOC), there is a critical unmet need to develop therapeutic interventions for EOC treatment. EOC metastasis is unique. Initial dissemination is not primarily hematogenous, yet is facilitated through shedding of primary tumor cells into the peritoneal fluid and accumulating ascites. Increasingly, isolated patient spheroids point to a clinical role for spheroids in EOC metastasis. EOC spheroids are highly invasive structures that disseminate upon peritoneal mesothelium, and visceral tissues including liver and omentum. Selection for this subset of chemoresistant EOC cells could influence disease progression and/or recurrence. Thus, targeting spheroid integrity/structure may improve the chemotherapeutic responsiveness of EOC. We discovered a critical role for mammalian Diaphanous (mDia)-related formin-2 in maintaining EOC spheroid structure. Both mDia2 and the related mDia1 regulate F-actin networks critical to maintain cell-cell contacts and the integrity of multi-cellular epithelial sheets. We investigated if mDia2 functional inhibition via a small molecule inhibitor SMIFH2 combined with chemotherapeutics, such as taxol and cisplatin, inhibits the viability of EOC monolayers and clinically relevant spheroids. SMIFH2-mediated mDia formin inhibition significantly reduced both ES2 and Skov3 EOC monolayer viability while spheroid viability was minimally impacted only at the highest concentrations. Combining either cisplatin or taxol with SMIFH2 did not significantly enhance the effects of either drug alone in ES2 monolayers, while Skov3 monolayers treated with taxol or cisplatin and SMIFH2 showed significant additive inhibition of viability. ES2 spheroids were highly responsive with clear additive anti-viability effects with dual taxol or cisplatin when combined with SMIFH2 treatments. While combined taxol with SMIFH2 in spheroids showed an additive effect relative to single

Relationships between Plant Diversity and Grasshopper Diversity and Abundance in the Little Missouri National Grassland

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David H. Branson

2011-01-01

Full Text Available A continuing challenge in orthopteran ecology is to understand what determines grasshopper species diversity at a given site. In this study, the objective was to determine if variation in grasshopper abundance and diversity between 23 sites in western North Dakota (USA could be explained by variation in plant species richness and diversity. In this system with relatively low plant diversity, grasshopper species richness and abundance were not significantly associated with plant species richness in either year. Although a number of significant associations between plant diversity and grasshopper diversity were found through regression analyses, results differed greatly between years indicating that plant species richness and diversity did not lead to strong effects on grasshopper diversity metrics. Plant species richness appears to be too coarse grained to lead to accurate predictions of grasshopper species richness in this system dominated by generalist grasshopper species.

The drivers of plant diversity

DEFF Research Database (Denmark)

Jensen, Kristine Engemann

dataset consisting of 72,533 vascular plant species in 432 families covering the New World. Eight plant growth forms were defined based on woodiness, structure, and root traits, and species names were standardized to the latest accepted scientific name. The data is used in Paper II and IV In Paper II we....... The study emphasise that using big, collected datasets is not without limitations, and we recommend using rarefaction for species richness estimation from such datasets. Paper IV investigates a well-known macroecological pattern, the latitudinal diversity gradient, for nine vascular plant functional groups......In this thesis we use a “big data” approach to describe and explain large-scale patterns of plant diversity. The botanical data used for the six papers come from three different databases covering the New World, North America, and Europe respectively. The data on plant distributions were combined...

Diversity begets diversity: host expansions and the diversification of plant-feeding insects

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Nylin Sören

2006-01-01

Full Text Available Abstract Background Plant-feeding insects make up a large part of earth's total biodiversity. While it has been shown that herbivory has repeatedly led to increased diversification rates in insects, there has been no compelling explanation for how plant-feeding has promoted speciation rates. There is a growing awareness that ecological factors can lead to rapid diversification and, as one of the most prominent features of most insect-plant interactions, specialization onto a diverse resource has often been assumed to be the main process behind this diversification. However, specialization is mainly a pruning process, and is not able to actually generate diversity by itself. Here we investigate the role of host colonizations in generating insect diversity, by testing if insect speciation rate is correlated with resource diversity. Results By applying a variant of independent contrast analysis, specially tailored for use on questions of species richness (MacroCAIC, we show that species richness is strongly correlated with diversity of host use in the butterfly family Nymphalidae. Furthermore, by comparing the results from reciprocal sister group selection, where sister groups were selected either on the basis of diversity of host use or species richness, we find that it is likely that diversity of host use is driving species richness, rather than vice versa. Conclusion We conclude that resource diversity is correlated with species richness in the Nymphalidae and suggest a scenario based on recurring oscillations between host expansions – the incorporation of new plants into the repertoire – and specialization, as an important driving force behind the diversification of plant-feeding insects.

Effect of Plant Diversity on Diversity and Abundance of Arthropods in Winter Wheat Fields

Directory of Open Access Journals (Sweden)

A Khodashenas

2011-02-01

Full Text Available Abstract Plant biomass and diversity play an important role in enhancing of biodiversity of other trophic levels, specially arthropods in terrestrial ecosystems. In order to determine the effects of plants on diversity and abundance of arthropods, a study was carried out in three regions of Razavi and northern Khorasan provinces, Shirvan, Mashhad and Gonabad. In each region, high and low input fields of winter wheat and a natural system for comparison were selected. In ripening stage of wheat growth (90 stage of Zadoks, sampling was done by use of quadrate in each system with five replications. Plants in each quadrate were counted and species richness of plants was determined. Insect sampling was done by sweep net from surface of plants, then species richness and abundance of collected insects were determined. As a result, agricultural practices decreased plant species richness but diversity and abundance of insects and spiders increased in agricultural systems. Our finding revealed that abundance of insects and spiders were not affected by plant species richness and plant biomass was the main factor affecting on species richness and abundance of insects, spiders and beneficial insects. Therefore, decreasing plant species richness that arose from agricultural practices doesn’t effect on arthropods diversity and abundance and doesn’t decrease sustainability of agricultural systems. Irregular use of chemical inputs, specially pesticides, is the main factor to decreasing of plants and arthropods species richness in agricultural systems. Keywords: Plant diversity, Arthropod diversity, Arthropod abundance, Plant-insect interactions, Agricultural systems

Plant diversity surpasses plant functional groups and plant productivity as driver of soil biota in the long term.

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Nico Eisenhauer

2011-01-01

Full Text Available One of the most significant consequences of contemporary global change is the rapid decline of biodiversity in many ecosystems. Knowledge of the consequences of biodiversity loss in terrestrial ecosystems is largely restricted to single ecosystem functions. Impacts of key plant functional groups on soil biota are considered to be more important than those of plant diversity; however, current knowledge mainly relies on short-term experiments.We studied changes in the impacts of plant diversity and presence of key functional groups on soil biota by investigating the performance of soil microorganisms and soil fauna two, four and six years after the establishment of model grasslands. The results indicate that temporal changes of plant community effects depend on the trophic affiliation of soil animals: plant diversity effects on decomposers only occurred after six years, changed little in herbivores, but occurred in predators after two years. The results suggest that plant diversity, in terms of species and functional group richness, is the most important plant community property affecting soil biota, exceeding the relevance of plant above- and belowground productivity and the presence of key plant functional groups, i.e. grasses and legumes, with the relevance of the latter decreasing in time.Plant diversity effects on biota are not only due to the presence of key plant functional groups or plant productivity highlighting the importance of diverse and high-quality plant derived resources, and supporting the validity of the singular hypothesis for soil biota. Our results demonstrate that in the long term plant diversity essentially drives the performance of soil biota questioning the paradigm that belowground communities are not affected by plant diversity and reinforcing the importance of biodiversity for ecosystem functioning.

Island phytophagy: explaining the remarkable diversity of plant-feeding insects.

Science.gov (United States)

Joy, Jeffrey B; Crespi, Bernard J

2012-08-22

Plant-feeding insects have undergone unparalleled diversification among different plant taxa, yet explanations for variation in their diversity lack a quantitative, predictive framework. Island biogeographic theory has been applied to spatially discrete habitats but not to habitats, such as host plants, separated by genetic distance. We show that relationships between the diversity of gall-inducing flies and their host plants meet several fundamental predictions from island biogeographic theory. First, plant-taxon genetic distinctiveness, an integrator for long-term evolutionary history of plant lineages, is a significant predictor of variance in the diversity of gall-inducing flies among host-plant taxa. Second, range size and structural complexity also explain significant proportions of the variance in diversity of gall-inducing flies among different host-plant taxa. Third, as with other island systems, plant-lineage age does not predict species diversity. Island biogeographic theory, applied to habitats defined by genetic distance, provides a novel, comprehensive framework for analysing and explaining the diversity of plant-feeding insects and other host-specific taxa.

Endophytic actinobacteria of medicinal plants: diversity and bioactivity.

Science.gov (United States)

Golinska, Patrycja; Wypij, Magdalena; Agarkar, Gauravi; Rathod, Dnyaneshwar; Dahm, Hanna; Rai, Mahendra

2015-08-01

Endophytes are the microorganisms that exist inside the plant tissues without having any negative impact on the host plant. Medicinal plants constitute the huge diversity of endophytic actinobacteria of economical importance. These microbes have huge potential to synthesis of numerous novel compounds that can be exploited in pharmaceutical, agricultural and other industries. It is of prime importance to focus the present research on practical utilization of this microbial group in order to find out the solutions to the problems related to health, environment and agriculture. An extensive characterization of diverse population of endophytic actinobacteria associated with medicinal plants can provide a greater insight into the plant-endophyte interactions and evolution of mutualism. In the present review, we have discussed the diversity of endophytic actinobacteria of from medicinal plants their multiple bioactivities.

Plant hydraulic diversity buffers forest ecosystem responses to drought

Science.gov (United States)

Anderegg, W.; Konings, A. G.; Trugman, A. T.; Pacala, S. W.; Yu, K.; Sulman, B. N.; Sperry, J.; Bowling, D. R.

2017-12-01

Drought impacts carbon, water, and energy cycles in forests and may pose a fundamental threat to forests in future climates. Plant hydraulic transport of water is central to tree drought responses, including curtailing of water loss and the risk of mortality during drought. The effect of biodiversity on ecosystem function has typically been examined in grasslands, yet the diversity of plant hydraulic strategies may influence forests' response to drought. In a combined analysis of eddy covariance measurements, remote-sensing data of plant water content variation, model simulations, and plant hydraulic trait data, we test the degree to which plant water stress schemes influence the carbon cycle and how hydraulic diversity within and across ecosystems affects large-scale drought responses. We find that current plant functional types are not well-suited to capture hydraulic variation and that higher hydraulic diversity buffers ecosystem variation during drought. Our results demonstrate that tree functional diversity, particularly hydraulic diversity, may be critical to simulate in plant functional types in current land surface model projections of future vegetation's response to climate extremes.

Carcinoma associated fibroblasts (CAFs) promote breast cancer motility by suppressing mammalian Diaphanous-related formin-2 (mDia2).

Science.gov (United States)

Dvorak, Kaitlyn M; Pettee, Krista M; Rubinic-Minotti, Kaitlin; Su, Robin; Nestor-Kalinoski, Andrea; Eisenmann, Kathryn M

2018-01-01

The tumor microenvironment (TME) promotes tumor cell invasion and metastasis. An important step in the shift to a pro-cancerous microenvironment is the transformation of normal stromal fibroblasts to carcinoma-associated fibroblasts (CAFs). CAFs are present in a majority of solid tumors and can directly promote tumor cell motility via cytokine, chemokine and growth factor secretion into the TME. The exact effects that the TME has upon cytoskeletal regulation in motile tumor cells remain enigmatic. The conserved formin family of cytoskeleton regulating proteins plays an essential role in the assembly and/or bundling of unbranched actin filaments. Mammalian Diaphanous-related formin 2 (mDia2/DIAPH3/Drf3/Dia) assembles a dynamic F-actin cytoskeleton that underlies tumor cell migration and invasion. We therefore sought to understand whether CAF-derived chemokines impact breast tumor cell motility through modification of the formin-assembled F-actin cytoskeleton. In MDA-MB-231 cells, conditioned media (CM) from WS19T CAFs, a human breast tumor-adjacent CAF line, significantly and robustly increased wound closure and invasion relative to normal human mammary fibroblast (HMF)-CM. WS19T-CM also promoted proteasome-mediated mDia2 degradation in MDA-MB-231 cells relative to control HMF-CM and WS21T CAF-CM, a breast CAF cell line that failed to promote robust MDA-MB-231 migration. Cytokine array analysis of CM identified up-regulated secreted factors in WS19T relative to control WS21T CM. We identified CXCL12 as a CM factor influencing loss of mDia2 protein while increasing MDA-MB-231 cell migration. Our data suggest a mechanism whereby CAFs promote tumor cell migration and invasion through CXCL12 secretion to regulate the mDia2-directed cytoskeleton in breast tumor cells.

Phylogenetic and Functional Diversity of Fleshy-Fruited Plants Are Positively Associated with Seedling Diversity in a Tropical Montane Forest

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Marcia C. Muñoz

2017-08-01

Full Text Available Mutualistic interactions between plants and animals can affect both plant and animal communities, and potentially leave imprints on plant demography. Yet, no study has simultaneously tested how trait variation in plant resources shapes the diversity of animal consumers, and how these interactions influence seedling recruitment. Here, we analyzed whether (i phylogenetic diversity and functional diversity of fruiting plants were correlated with the corresponding diversity of frugivorous birds, and (ii whether phylogenetic diversity and functional identity of plant and bird communities influenced the corresponding diversity and identity of seedling communities. We recorded mutualistic interactions between fleshy-fruited plants and frugivorous birds and seedling communities in 10 plots along an elevational gradient in the Colombian Andes. We built a phylogeny for plants/seedlings and birds and measured relevant morphological plant and bird traits that influence plant-bird interactions and seedling recruitment. We found that phylogenetic diversity and functional diversity of frugivorous birds were positively associated with the corresponding diversities of fruiting plants, consistent with a bottom-up effect of plants on birds. Moreover, the phylogenetic diversity of seedlings was related to the phylogenetic diversity of plants, but was unrelated to the phylogenetic diversity of frugivorous birds, suggesting that top-down effects of animals on seedlings were weak. Mean seed mass of seedling communities was positively associated with the mean fruit mass of plants, but was not associated with the mean avian body mass in the frugivore communities. Our study shows that variation in the traits of fleshy-fruited plants was associated with the diversity of frugivorous birds and affected the future trajectory of seedling recruitment, whereas the morphological traits of animal seed dispersers were unrelated to the phylogenetic and functional structure of

FH3, a domain found in formins, targets the fission yeast formin Fus1 to the projection tip during conjugation

DEFF Research Database (Denmark)

Petersen, J; Nielsen, O; Egel, R

1998-01-01

of the late G2 cells in a vegetatively growing population. Expression of both FH3-GFP fusions also affected cytokinesis. Overexpression of the spindle pole body component Sad1 altered the distribution of both Sad1 and the FH3-GFP domain. Together these data suggest that proteins at multiple sites can interact...... is required for conjugation, and is localized to the projection tip in cells of mating pairs. We replaced genomic fus1+ with green fluorescent protein (GFP)- tagged versions that lacked either the FH1, FH2, or FH3 domain. Deletion of any FH domain essentially abolished mating. FH3, but neither FH1 nor FH2......, was required for Fus1 localization. An FH3 domain-GFP fusion protein localized to the projection tips of mating pairs. Thus, the FH3 domain alone can direct protein localization. The FH3 domains of both Fus1 and the S. pombe cytokinesis formin Cdc12 were able to localize GFP to the spindle pole body in half...

Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms

NARCIS (Netherlands)

Kowalchuk, G.A.; Buma, D.S; De Boer, W.; Klinkhamer, P.G.L.; Van Veen, J.A.

2002-01-01

A coupling of above-ground plant diversity and below-ground microbial diversity has been implied in studies dedicated to assessing the role of macrophyte diversity on the stability, resilience, and functioning of ecosystems. Indeed, above-ground plant communities have long been assumed to drive

plant diversity, vegetation structure and relationship between plant

African Journals Online (AJOL)

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patterns of plant diversity were evaluated on the basis of species richness as the total number ... threatened due to habitat conversion, loss, and ... the conservation of highland forest bird species .... the economic and social welfare of the rural.

Diverse role of CBL-interacting protein kinases in plant

Indian Academy of Sciences (India)

admin

Diverse role of CBL-interacting protein kinases in plant. Most of the extracellular and ... to their role in stress signalling. Their role in transport of plant hormone auxin and mechanism of action in stress response shed new light on diverse role of.

Plant genotypic diversity reduces the rate of consumer resource utilization.

Science.gov (United States)

McArt, Scott H; Thaler, Jennifer S

2013-07-07

While plant species diversity can reduce herbivore densities and herbivory, little is known regarding how plant genotypic diversity alters resource utilization by herbivores. Here, we show that an invasive folivore--the Japanese beetle (Popillia japonica)--increases 28 per cent in abundance, but consumes 24 per cent less foliage in genotypic polycultures compared with monocultures of the common evening primrose (Oenothera biennis). We found strong complementarity for reduced herbivore damage among plant genotypes growing in polycultures and a weak dominance effect of particularly resistant genotypes. Sequential feeding by P. japonica on different genotypes from polycultures resulted in reduced consumption compared with feeding on different plants of the same genotype from monocultures. Thus, diet mixing among plant genotypes reduced herbivore consumption efficiency. Despite positive complementarity driving an increase in fruit production in polycultures, we observed a trade-off between complementarity for increased plant productivity and resistance to herbivory, suggesting costs in the complementary use of resources by plant genotypes may manifest across trophic levels. These results elucidate mechanisms for how plant genotypic diversity simultaneously alters resource utilization by both producers and consumers, and show that population genotypic diversity can increase the resistance of a native plant to an invasive herbivore.

Intraspecific chemical diversity among neighbouring plants correlates positively with plant size and herbivore load but negatively with herbivore damage.

Science.gov (United States)

Bustos-Segura, Carlos; Poelman, Erik H; Reichelt, Michael; Gershenzon, Jonathan; Gols, Rieta

2017-01-01

Intraspecific plant diversity can modify the properties of associated arthropod communities and plant fitness. However, it is not well understood which plant traits determine these ecological effects. We explored the effect of intraspecific chemical diversity among neighbouring plants on the associated invertebrate community and plant traits. In a common garden experiment, intraspecific diversity among neighbouring plants was manipulated using three plant populations of wild cabbage that differ in foliar glucosinolates. Plants were larger, harboured more herbivores, but were less damaged when plant diversity was increased. Glucosinolate concentration differentially correlated with generalist and specialist herbivore abundance. Glucosinolate composition correlated with plant damage, while in polycultures, variation in glucosinolate concentrations among neighbouring plants correlated positively with herbivore diversity and negatively with plant damage levels. The results suggest that intraspecific variation in secondary chemistry among neighbouring plants is important in determining the structure of the associated insect community and positively affects plant performance. © 2016 The Authors. Ecology Letters published by CNRS and John Wiley & Sons Ltd.

Literature study of plants diversity in Sempu Island Nature Reserve, East Java

Directory of Open Access Journals (Sweden)

RONY IRAWANTO

2017-03-01

Full Text Available Abstract. Irawanto R, Abywijaya IK, Mudiana D. 2017. Literature study of plants diversity in Sempu Island Nature Reserve, East Java. Pros Sem Nas Masy Biodiv Indon 3: 138-146. Purwodadi Botanic Garden have the task of plant conservation through inventories, exploration, collection and maintenance of plants, especially on dry lowland plants. Exploration activities and plants collection aim to conserve and save the plants from extinction, as well as conduct research and documentation of plant diversity in a region. It's related of the global strategy for plant conservation (GSPC target is known and documentation of plants diversity, especially in threatened habitats could be a priority. Sempu island's status as a nature reserve has a diversity of ecosystem and biodiversity of flora and fauna that are endemic and unique. This study aims to determine the plant's diversity in Island Sempu Nature Reserve based on a literature review of various studies that have been done. This study is a database for planning exploration activities, collecting, and documenting the plant's diversity in Sempu Island - East Java. Based on the literature review there are 282 species of plant diversity in Sempu Island, included in 80 families, contained in 10 blocks/location areas, namely Telaga Lele, Telaga Sat, Telaga Dowo, Gladakan, Baru-baru, Gua Macan, Teluk Ra’as, Teluk Semut, Air Tawar, dan Waru-Waru.Tenth blocks represent plants vegetation of mangrove forest, coastal forest, lowland tropical forests, and meadows.

Plant parasite control and soil fauna diversity.

Science.gov (United States)

Lavelle, Patrick; Blouin, Manuel; Boyer, Johnny; Cadet, Patrice; Laffray, Daniel; Pham-Thi, Anh-Thu; Reversat, Georges; Settle, William; Zuily, Yasmine

2004-07-01

The use of pesticides to control plant parasites and diseases has generated serious problems of public health and environmental quality, leading to the promotion of alternative Integrated Pest Management strategies that tend to rely more on natural processes and the active participation of farmers as observers and experimenters in their own fields. We present three case studies that point at different options provided by locally available populations of soil organisms, the maintenance of diverse populations of pests or increased resistance of plants to pest attacks by their interactions with earthworms and other useful soil organisms. These examples demonstrate the diversity of options offered by the non-planned agro-ecosystem diversity in pest control and the need to identify management options that maintain this biodiversity.

Effects of plant diversity on the concentration of secondary plant metabolites and the density of arthropods on focal plants in the field

NARCIS (Netherlands)

Kostenko, O.; Mulder, Patrick P. J.; Courbois, Matthijs; Bezemer, T. Martijn

2017-01-01

1.The diversity of the surrounding plant community can directly affect the abundance of insects on a focal plant as well as the size and quality of that focal plant. However, to what extent the effects of plant diversity on the arthropod community on a focal plant are mediated by host plant quality

Inter-varietal interactions among plants in genotypically diverse mixtures tend to decrease herbivore performance.

Science.gov (United States)

Grettenberger, Ian M; Tooker, John F

2016-09-01

Much research has explored the effects of plant species diversity on herbivore populations, but far less has considered effects of plant genotypic diversity, or how abiotic stressors, like drought, can modify effects. Mechanisms by which plant genotypic diversity affects herbivore populations remain largely unresolved. We used greenhouse studies with a model system of wheat (Triticum aestivum L.) and bird cherry-oat aphid (Rhopalosiphum padi L.) to determine whether the genotypic diversity of a plant's neighborhood influences performance and fitness of herbivores on a focal plant and if drought changes the influence of neighborhood diversity. Taken across all varieties we tested, plant-plant interactions in diverse neighborhoods reduced aphid performance and generated associational resistance, although effects on aphids depended on variety identity. In diverse mixtures, drought stress greatly diminished the genotypic diversity-driven reduction in aphid performance. Neighborhood diversity influenced mother aphid size, and appeared to partially explain how plant-plant interactions reduced the number of offspring produced in mixtures. Plant size did not mediate effects on aphid performance, although neighborhood diversity reduced plant mass across varieties and watering treatments. Our results suggest inter-varietal interactions in genotypic mixtures can affect herbivore performance in the absence of herbivore movement and that abiotic stress may diminish any effects. Accounting for how neighborhood diversity influences resistance of an individual plant to herbivores will help aid development of mixtures of varieties for managing insect pests and clarify the role of plant genotypic diversity in ecosystems.

Plant functional diversity affects climate-vegetation interaction

Science.gov (United States)

Groner, Vivienne P.; Raddatz, Thomas; Reick, Christian H.; Claussen, Martin

2018-04-01

We present how variations in plant functional diversity affect climate-vegetation interaction towards the end of the African Humid Period (AHP) in coupled land-atmosphere simulations using the Max Planck Institute Earth system model (MPI-ESM). In experiments with AHP boundary conditions, the extent of the green Sahara varies considerably with changes in plant functional diversity. Differences in vegetation cover extent and plant functional type (PFT) composition translate into significantly different land surface parameters, water cycling, and surface energy budgets. These changes have not only regional consequences but considerably alter large-scale atmospheric circulation patterns and the position of the tropical rain belt. Towards the end of the AHP, simulations with the standard PFT set in MPI-ESM depict a gradual decrease of precipitation and vegetation cover over time, while simulations with modified PFT composition show either a sharp decline of both variables or an even slower retreat. Thus, not the quantitative but the qualitative PFT composition determines climate-vegetation interaction and the climate-vegetation system response to external forcing. The sensitivity of simulated system states to changes in PFT composition raises the question how realistically Earth system models can actually represent climate-vegetation interaction, considering the poor representation of plant diversity in the current generation of land surface models.

Turnover of plant lineages shapes herbivore phylogenetic beta diversity along ecological gradients.

Science.gov (United States)

Pellissier, Loïc; Ndiribe, Charlotte; Dubuis, Anne; Pradervand, Jean-Nicolas; Salamin, Nicolas; Guisan, Antoine; Rasmann, Sergio

2013-05-01

Understanding drivers of biodiversity patterns is of prime importance in this era of severe environmental crisis. More diverse plant communities have been postulated to represent a larger functional trait-space, more likely to sustain a diverse assembly of herbivore species. Here, we expand this hypothesis to integrate environmental, functional and phylogenetic variation of plant communities as factors explaining the diversity of lepidopteran assemblages along elevation gradients in the Swiss Western Alps. According to expectations, we found that the association between butterflies and their host plants is highly phylogenetically structured. Multiple regression analyses showed the combined effect of climate, functional traits and phylogenetic diversity in structuring butterfly communities. Furthermore, we provide the first evidence that plant phylogenetic beta diversity is the major driver explaining butterfly phylogenetic beta diversity. Along ecological gradients, the bottom up control of herbivore diversity is thus driven by phylogenetically structured turnover of plant traits as well as environmental variables. © 2013 Blackwell Publishing Ltd/CNRS.

Novel roles of formin mDia2 in lamellipodia and filopodia formation in motile cells.

Directory of Open Access Journals (Sweden)

Changsong Yang

2007-11-01

Full Text Available Actin polymerization-driven protrusion of the leading edge is a key element of cell motility. The important actin nucleators formins and the Arp2/3 complex are believed to have nonoverlapping functions in inducing actin filament bundles in filopodia and dendritic networks in lamellipodia, respectively. We tested this idea by investigating the role of mDia2 formin in leading-edge protrusion by loss-of-function and gain-of-function approaches. Unexpectedly, mDia2 depletion by short interfering RNA (siRNA severely inhibited lamellipodia. Structural analysis of the actin network in the few remaining lamellipodia suggested an mDia2 role in generation of long filaments. Consistently, constitutively active mDia2 (DeltaGBD-mDia2 induced accumulation of long actin filaments in lamellipodia and increased persistence of lamellipodial protrusion. Depletion of mDia2 also inhibited filopodia, whereas expression of DeltaGBD-mDia2 promoted their formation. Correlative light and electron microscopy showed that DeltaGBD-mDia2-induced filopodia were formed from lamellipodial network through gradual convergence of long lamellipodial filaments into bundles. Efficient filopodia induction required mDia2 targeting to the membrane, likely through a scaffolding protein Abi1. Furthermore, mDia2 and Abi1 interacted through the N-terminal regulatory sequences of mDia2 and the SH3-containing Abi1 sequences. We propose that mDia2 plays an important role in formation of lamellipodia by nucleating and/or protecting from capping lamellipodial actin filaments, which subsequently exhibit high tendency to converge into filopodia.

Links between plant litter chemistry, species diversity, and below-ground ecosystem function.

Science.gov (United States)

Meier, Courtney L; Bowman, William D

2008-12-16

Decomposition is a critical source of plant nutrients, and drives the largest flux of terrestrial C to the atmosphere. Decomposing soil organic matter typically contains litter from multiple plant species, yet we lack a mechanistic understanding of how species diversity influences decomposition processes. Here, we show that soil C and N cycling during decomposition are controlled by the composition and diversity of chemical compounds within plant litter mixtures, rather than by simple metrics of plant species diversity. We amended native soils with litter mixtures containing up to 4 alpine plant species, and we used 9 litter chemical traits to evaluate the chemical composition (i.e., the identity and quantity of compounds) and chemical diversity of the litter mixtures. The chemical composition of the litter mixtures was the strongest predictor of soil respiration, net N mineralization, and microbial biomass N. Soil respiration and net N mineralization rates were also significantly correlated with the chemical diversity of the litter mixtures. In contrast, soil C and N cycling rates were poorly correlated with plant species richness, and there was no relationship between species richness and the chemical diversity of the litter mixtures. These results indicate that the composition and diversity of chemical compounds in litter are potentially important functional traits affecting decomposition, and simple metrics like plant species richness may fail to capture variation in these traits. Litter chemical traits therefore provide a mechanistic link between organisms, species diversity, and key components of below-ground ecosystem function.

Small-molecule intramimics of formin autoinhibition: a new strategy to target the cytoskeletal remodeling machinery in cancer cells.

Science.gov (United States)

Lash, L Leanne; Wallar, Bradley J; Turner, Julie D; Vroegop, Steven M; Kilkuskie, Robert E; Kitchen-Goosen, Susan M; Xu, H Eric; Alberts, Arthur S

2013-11-15

Although the cancer cell cytoskeleton is a clinically validated target, few new strategies have emerged for selectively targeting cell division by modulating the cytoskeletal structure, particularly ways that could avoid the cardiotoxic and neurotoxic effects of current agents such as taxanes. We address this gap by describing a novel class of small-molecule agonists of the mammalian Diaphanous (mDia)-related formins, which act downstream of Rho GTPases to assemble actin filaments, and their organization with microfilaments to establish and maintain cell polarity during migration and asymmetric division. GTP-bound Rho activates mDia family members by disrupting the interaction between the DID and DAD autoregulatory domains, which releases the FH2 domain to modulate actin and microtubule dynamics. In screening for DID-DAD disruptors that activate mDia, we identified two molecules called intramimics (IMM-01 and -02) that were sufficient to trigger actin assembly and microtubule stabilization, serum response factor-mediated gene expression, cell-cycle arrest, and apoptosis. In vivo analysis of IMM-01 and -02 established their ability to slow tumor growth in a mouse xenograft model of colon cancer. Taken together, our work establishes the use of intramimics and mDia-related formins as a new general strategy for therapeutic targeting of the cytoskeletal remodeling machinery of cancer cells. ©2013 AACR

Acidification of sandy grasslands - consequences for plant diversity

DEFF Research Database (Denmark)

Olsson, Pål Axel; Mårtensson, Linda-Maria; Bruun, Hans Henrik

2009-01-01

soil; a number of nationally red-listed species showed a similar pattern. Plant species diversity and number of red-listed species increased with slope. Where the topsoil had been acidified, limestone was rarely present above a depth of 30 cm. The presence of limestone restricts the availability......Questions: (1) Does soil acidification in calcareous sandy grasslands lead to loss of plant diversity? (2) What is the relationship between the soil content of lime and the plant availability of mineral nitrogen (N) and phosphorus (P) in sandy grasslands? Location: Sandy glaciofluvial deposits......). Environmental variables were recorded at each plot, and soil samples were analysed for exchangeable P and N, as well as limestone content and pH. Data were analysed with regression analysis and canonical correspondence analysis. Results: Plant species richness was highest on weakly acid to slightly alkaline...

Functional diversity of microbial decomposers facilitates plant coexistence in a plant-microbe-soil feedback model.

Science.gov (United States)

Miki, Takeshi; Ushio, Masayuki; Fukui, Shin; Kondoh, Michio

2010-08-10

Theory and empirical evidence suggest that plant-soil feedback (PSF) determines the structure of a plant community and nutrient cycling in terrestrial ecosystems. The plant community alters the nutrient pool size in soil by affecting litter decomposition processes, which in turn shapes the plant community, forming a PSF system. However, the role of microbial decomposers in PSF function is often overlooked, and it remains unclear whether decomposers reinforce or weaken litter-mediated plant control over nutrient cycling. Here, we present a theoretical model incorporating the functional diversity of both plants and microbial decomposers. Two fundamental microbial processes are included that control nutrient mineralization from plant litter: (i) assimilation of mineralized nutrient into the microbial biomass (microbial immobilization), and (ii) release of the microbial nutrients into the inorganic nutrient pool (net mineralization). With this model, we show that microbial diversity may act as a buffer that weakens plant control over the soil nutrient pool, reversing the sign of PSF from positive to negative and facilitating plant coexistence. This is explained by the decoupling of litter decomposability and nutrient pool size arising from a flexible change in the microbial community composition and decomposition processes in response to variations in plant litter decomposability. Our results suggest that the microbial community plays a central role in PSF function and the plant community structure. Furthermore, the results strongly imply that the plant-centered view of nutrient cycling should be changed to a plant-microbe-soil feedback system, by incorporating the community ecology of microbial decomposers and their functional diversity.

Response of pest control by generalist predators to local-scale plant diversity: a meta-analysis.

Science.gov (United States)

Dassou, Anicet Gbèblonoudo; Tixier, Philippe

2016-02-01

Disentangling the effects of plant diversity on the control of herbivores is important for understanding agricultural sustainability. Recent studies have investigated the relationships between plant diversity and arthropod communities at the landscape scale, but few have done so at the local scale. We conducted a meta-analysis of 32 papers containing 175 independent measures of the relationship between plant diversity and arthropod communities. We found that generalist predators had a strong positive response to plant diversity, that is, their abundance increased as plant diversity increased. Herbivores, in contrast, had an overall weak and negative response to plant diversity. However, specialist and generalist herbivores differed in their response to plant diversity, that is, the response was negative for specialists and not significant for generalists. While the effects of scale remain unclear, the response to plant diversity tended to increase for specialist herbivores, but decrease for generalist herbivores as the scale increased. There was no clear effect of scale on the response of generalist predators to plant diversity. Our results suggest that the response of herbivores to plant diversity at the local scale is a balance between habitat and trophic effects that vary according to arthropod specialization and habitat type. Synthesis and applications. Positive effects of plant diversity on generalist predators confirm that, at the local scale, plant diversification of agroecosystems is a credible and promising option for increasing pest regulation. Results from our meta-analysis suggest that natural control in plant-diversified systems is more likely to occur for specialist than for generalist herbivores. In terms of pest management, our results indicate that small-scale plant diversification (via the planting of cover crops or intercrops and reduced weed management) is likely to increase the control of specialist herbivores by generalist predators.

Environmental conditions influence the plant functional diversity effect on potential denitrification.

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Ariana E Sutton-Grier

2011-02-01

Full Text Available Global biodiversity loss has prompted research on the relationship between species diversity and ecosystem functioning. Few studies have examined how plant diversity impacts belowground processes; even fewer have examined how varying resource levels can influence the effect of plant diversity on microbial activity. In a field experiment in a restored wetland, we examined the role of plant trait diversity (or functional diversity, (FD and its interactions with natural levels of variability of soil properties, on a microbial process, denitrification potential (DNP. We demonstrated that FD significantly affected microbial DNP through its interactions with soil conditions; increasing FD led to increased DNP but mainly at higher levels of soil resources. Our results suggest that the effect of species diversity on ecosystem functioning may depend on environmental factors such as resource availability. Future biodiversity experiments should examine how natural levels of environmental variability impact the importance of biodiversity to ecosystem functioning.

Local Plant Diversity Across Multiple Habitats Supports a Diverse Wild Bee Community in Pennsylvania Apple Orchards.

Science.gov (United States)

Kammerer, Melanie A; Biddinger, David J; Rajotte, Edwin G; Mortensen, David A

2016-02-01

Wild pollinators supply essential, historically undervalued pollination services to crops and other flowering plant communities with great potential to ensure agricultural production against the loss of heavily relied upon managed pollinators. Local plant communities provision wild bees with crucial floral and nesting resources, but the distribution of floristic diversity among habitat types in North American agricultural landscapes and its effect on pollinators are diverse and poorly understood, especially in orchard systems. We documented floristic diversity in typical mid-Atlantic commercial apple (Malus domestica Borkh.) orchards including the forest and orchard-forest edge ("edge") habitats surrounding orchards in a heterogeneous landscape in south-central Pennsylvania, USA. We also assessed the correlation between plant richness and orchard pollinator communities. In this apple production region, edge habitats are the most species rich, supporting 146 out of 202 plant species recorded in our survey. Plant species richness in the orchard and edge habitats were significant predictors of bee species richness and abundance in the orchard, as well as landscape area of the forest and edge habitats. Both the quantity and quality of forest and edges close to orchards play a significant role in provisioning a diverse wild bee community in this agroecosystem. © The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Habitat Heterogeneity Affects Plant and Arthropod Species Diversity and Turnover in Traditional Cornfields.

Science.gov (United States)

Martínez, Eliana; Rös, Matthias; Bonilla, María Argenis; Dirzo, Rodolfo

2015-01-01

The expansion of the agricultural frontier by the clearing of remnant forests has led to human-dominated landscape mosaics. Previous studies have evaluated the effect of these landscape mosaics on arthropod diversity at local spatial scales in temperate and tropical regions, but little is known about fragmentation effects in crop systems, such as the complex tropical traditional crop systems that maintain a high diversity of weeds and arthropods in low-Andean regions. To understand the factors that influence patterns of diversity in human-dominated landscapes, we investigate the effect of land use types on plant and arthropod diversity in traditionally managed cornfields, via surveys of plants and arthropods in twelve traditional cornfields in the Colombian Andes. We estimated alpha and beta diversity to analyze changes in diversity related to land uses within a radius of 100 m to 1 km around each cornfield. We observed that forests influenced alpha diversity of plants, but not of arthropods. Agricultural lands had a positive relationship with plants and herbivores, but a negative relationship with predators. Pastures positively influenced the diversity of plants and arthropods. In addition, forest cover seemed to influence changes in plant species composition and species turnover of herbivore communities among cornfields. The dominant plant species varied among fields, resulting in high differentiation of plant communities. Predator communities also exhibited high turnover among cornfields, but differences in composition arose mainly among rare species. The crop system evaluated in this study represents a widespread situation in the tropics, therefore, our results can be of broad significance. Our findings suggest that traditional agriculture may not homogenize biological communities, but instead could maintain the regional pool of species through high beta diversity.

Functional diversity in plant communities: Theory and analysis ...

African Journals Online (AJOL)

Plant functional diversity in community has become a key point in ecology studies recently. The development of species functional diversity was reviewed in the present work. Based on the former original research papers and reviews, we discussed the concept and connotation and put forward a new definition of functional ...

Plant-associated microbiomes in arid lands: diversity, ecology and biotechnological potential

KAUST Repository

Soussi, Asma

2015-08-28

Background: Aridification is a worldwide serious threat directly affecting agriculture and crop production. In arid and desert areas, it has been found that microbial diversity is huge, built of microorganisms able to cope with the environmental harsh conditions by developing adaptation strategies. Plants growing in arid lands or regions facing prolonged abiotic stresses such as water limitation and salt accumulation have also developed specific physiological and molecular stress responses allowing them to thrive under normally unfavorable conditions. Scope: Under such extreme selection pressures, special root-associated bacterial assemblages, endowed with capabilities of plant growth promotion (PGP) and extremophile traits, are selected by the plants. In this review, we provide a general overview on the microbial diversity in arid lands and deserts versus specific microbial assemblages associated with plants. The ecological drivers that shape this diversity, how plant-associated microbiomes are selected, and their biotechnological potential are discussed. Conclusions: Selection and recruitment of the plant associated bacterial assemblages is mediated by the combination of the bio-pedo-agroclimatic conditions and the plant species or varieties. Diversity and functional redundancy of these associated PGPR makes them very active in supporting plant improvement, health and resistance to drought, salt and related stresses. Implementing proper biotechnological applications of the arid and desert-adapted PGPR constitute the challenge to be raised.

Loss of RhoB expression enhances the myelodysplastic phenotype of mammalian diaphanous-related Formin mDia1 knockout mice.

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Aaron D DeWard

Full Text Available Myelodysplastic syndrome (MDS is characterized by ineffective hematopoiesis and hyperplastic bone marrow. Complete loss or interstitial deletions of the long arm of chromosome 5 occur frequently in MDS. One candidate tumor suppressor on 5q is the mammalian Diaphanous (mDia-related formin mDia1, encoded by DIAPH1 (5q31.3. mDia-family formins act as effectors for Rho-family small GTP-binding proteins including RhoB, which has also been shown to possess tumor suppressor activity. Mice lacking the Drf1 gene that encodes mDia1 develop age-dependent myelodysplastic features. We crossed mDia1 and RhoB knockout mice to test whether the additional loss of RhoB expression would compound the myelodysplastic phenotype. Drf1(-/-RhoB(-/- mice are fertile and develop normally. Relative to age-matched Drf1(-/-RhoB(+/- mice, the age of myelodysplasia onset was earlier in Drf1(-/-RhoB(-/- animals--including abnormally shaped erythrocytes, splenomegaly, and extramedullary hematopoiesis. In addition, we observed a statistically significant increase in the number of activated monocytes/macrophages in both the spleen and bone marrow of Drf1(-/-RhoB(-/- mice relative to Drf1(-/-RhoB(+/- mice. These data suggest a role for RhoB-regulated mDia1 in the regulation of hematopoietic progenitor cells.

Diversity and Plant Growth Promoting Proerties of Rhizobacteria ...

African Journals Online (AJOL)

The purpose of this study was to evaluate and assess the plant growth promoting characteristics and diversity of major tef rhizosphere isolates from central Ethiopia. A total of 162 bacteria were isolated from rhizosphere of tef [Eragrostis tef (Zucc.) Trotter] and characterized. While screening using some plant growth ...

Habitat Heterogeneity Affects Plant and Arthropod Species Diversity and Turnover in Traditional Cornfields.

Directory of Open Access Journals (Sweden)

Eliana Martínez

Full Text Available The expansion of the agricultural frontier by the clearing of remnant forests has led to human-dominated landscape mosaics. Previous studies have evaluated the effect of these landscape mosaics on arthropod diversity at local spatial scales in temperate and tropical regions, but little is known about fragmentation effects in crop systems, such as the complex tropical traditional crop systems that maintain a high diversity of weeds and arthropods in low-Andean regions. To understand the factors that influence patterns of diversity in human-dominated landscapes, we investigate the effect of land use types on plant and arthropod diversity in traditionally managed cornfields, via surveys of plants and arthropods in twelve traditional cornfields in the Colombian Andes. We estimated alpha and beta diversity to analyze changes in diversity related to land uses within a radius of 100 m to 1 km around each cornfield. We observed that forests influenced alpha diversity of plants, but not of arthropods. Agricultural lands had a positive relationship with plants and herbivores, but a negative relationship with predators. Pastures positively influenced the diversity of plants and arthropods. In addition, forest cover seemed to influence changes in plant species composition and species turnover of herbivore communities among cornfields. The dominant plant species varied among fields, resulting in high differentiation of plant communities. Predator communities also exhibited high turnover among cornfields, but differences in composition arose mainly among rare species. The crop system evaluated in this study represents a widespread situation in the tropics, therefore, our results can be of broad significance. Our findings suggest that traditional agriculture may not homogenize biological communities, but instead could maintain the regional pool of species through high beta diversity.

Genome Size Diversity and Its Impact on the Evolution of Land Plants

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Jaume Pellicer

2018-02-01

Full Text Available Genome size is a biodiversity trait that shows staggering diversity across eukaryotes, varying over 64,000-fold. Of all major taxonomic groups, land plants stand out due to their staggering genome size diversity, ranging ca. 2400-fold. As our understanding of the implications and significance of this remarkable genome size diversity in land plants grows, it is becoming increasingly evident that this trait plays not only an important role in shaping the evolution of plant genomes, but also in influencing plant community assemblages at the ecosystem level. Recent advances and improvements in novel sequencing technologies, as well as analytical tools, make it possible to gain critical insights into the genomic and epigenetic mechanisms underpinning genome size changes. In this review we provide an overview of our current understanding of genome size diversity across the different land plant groups, its implications on the biology of the genome and what future directions need to be addressed to fill key knowledge gaps.

Fungal-host diversity among mycoheterotrophic plants increases proportionally to their fungal-host overlap.

Science.gov (United States)

Gomes, Sofia I F; Merckx, Vincent S F T; Saavedra, Serguei

2017-05-01

The vast majority of plants obtain an important proportion of vital resources from soil through mycorrhizal fungi. Generally, this happens in exchange of photosynthetically fixed carbon, but occasionally the interaction is mycoheterotrophic, and plants obtain carbon from mycorrhizal fungi. This process results in an antagonistic interaction between mycoheterotrophic plants and their fungal hosts. Importantly, the fungal-host diversity available for plants is restricted as mycoheterotrophic interactions often involve narrow lineages of fungal hosts. Unfortunately, little is known whether fungal-host diversity may be additionally modulated by plant-plant interactions through shared hosts. Yet, this may have important implications for plant competition and coexistence. Here, we use DNA sequencing data to investigate the interaction patterns between mycoheterotrophic plants and arbuscular mycorrhizal fungi. We find no phylogenetic signal on the number of fungal hosts nor on the fungal hosts shared among mycoheterotrophic plants. However, we observe a potential trend toward increased phylogenetic diversity of fungal hosts among mycoheterotrophic plants with increasing overlap in their fungal hosts. While these patterns remain for groups of plants regardless of location, we do find higher levels of overlap and diversity among plants from the same location. These findings suggest that species coexistence cannot be fully understood without attention to the two sides of ecological interactions.

Fungal diversity associated with Hawaiian Drosophila host plants.

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Brian S Ort

Full Text Available Hawaiian Drosophila depend primarily, sometimes exclusively, on specific host plants for oviposition and larval development, and most specialize further on a particular decomposing part of that plant. Differences in fungal community between host plants and substrate types may establish the basis for host specificity in Hawaiian Drosophila. Fungi mediate decomposition, releasing plant micronutrients and volatiles that can indicate high quality substrates and serve as cues to stimulate oviposition. This study addresses major gaps in our knowledge by providing the first culture-free, DNA-based survey of fungal diversity associated with four ecologically important tree genera in the Hawaiian Islands. Three genera, Cheirodendron, Clermontia, and Pisonia, are important host plants for Drosophila. The fourth, Acacia, is not an important drosophilid host but is a dominant forest tree. We sampled fresh and rotting leaves from all four taxa, plus rotting stems from Clermontia and Pisonia. Based on sequences from the D1/D2 domain of the 26S rDNA gene, we identified by BLAST search representatives from 113 genera in 13 fungal classes. A total of 160 operational taxonomic units, defined on the basis of ≥97% genetic similarity, were identified in these samples, but sampling curves show this is an underestimate of the total fungal diversity present on these substrates. Shannon diversity indices ranged from 2.0 to 3.5 among the Hawaiian samples, a slight reduction compared to continental surveys. We detected very little sharing of fungal taxa among the substrates, and tests of community composition confirmed that the structure of the fungal community differed significantly among the substrates and host plants. Based on these results, we hypothesize that fungal community structure plays a central role in the establishment of host preference in the Hawaiian Drosophila radiation.

Small mammals as indicators of cryptic plant species diversity in the central Chilean plant endemicity hotspot

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Meredith Root-Bernstein

2014-12-01

Full Text Available Indicator species could help to compensate for a shortfall of knowledge about the diversity and distributions of undersampled and cryptic species. This paper provides background knowledge about the ecological interactions that affect and are affected by herbaceous diversity in central Chile, as part of the indicator species selection process. We focus on the ecosystem engineering role of small mammals, primarily the degu Octodon degus. We also consider the interacting effects of shrubs, trees, avian activity, livestock, slope, and soil quality on herbaceous communities in central Chile. We sampled herbaceous diversity on a private landholding characterized by a mosaic of savanna, grassland and matorral, across a range of degu disturbance intensities. We find that the strongest factors affecting endemic herbaceous diversity are density of degu runways, shrub cover and avian activity. Our results show that the degu, a charismatic and easily identifiable and countable species, could be used as an indicator species to aid potential conservation actions such as private protected area uptake. We map areas in central Chile where degus may indicate endemic plant diversity. This area is larger than expected, and suggests that significant areas of endemic plant communities may still exist, and should be identified and protected. Keywords: Cryptic species, Diversity, Endemic, Indicator species, Octodon degus, Plant

Diversity dynamics of silurian-early carboniferous land plants in South china.

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Conghui Xiong

Full Text Available New megafossil and microfossil data indicate four episodes in the diversification of Silurian-Early Carboniferous land plants of South China, a relatively continuous regional record. Plant diversity increased throughout, but the rising curve was punctuated by three major falls. There were peaks of origination in the Ludlow-Pragian, Givetian, late Famennian and Visean and peaks of extinction in the Pragian-Emsian, Givetian and early Tournaisian. Speciation and extinction rates were highest in the Lochkovian-Pragian and became progressively lower in subsequent stages. High correlation coefficients indicate that these events are associated with the availability of land habitat contingent on eustatic variations and increasing numbers of cosmopolitan genera. Meanwhile, proportions of endemic genera declined gradually. Due to less endemism and more migrations, both speciation and species extinction rates reduced. The changes of diversity and the timing of the three extinctions of land plants in South China are similar to those known already from Laurussia. However, the largest events in the Lochkovian-Pragian and subsequent smaller ones have not been seen in the global pattern of plant evolution. These land plant events do not correspond well temporally with those affecting land vertebrates or marine invertebrates. In South China, the diversity curve of land plants is generally opposite to that of marine faunas, showing a strong effect of eustatic variations. The increasing diversity of both land vertebrates and plants was punctuated above the Devonian-Carboniferous boundary, known as Romer's Gap, implying common underlying constraints on macroevolution of land animals and plants.

Evolutionary history determines how plant productivity responds to phylogenetic diversity and species richness

Directory of Open Access Journals (Sweden)

Mark A. Genung

2014-03-01

Full Text Available The relationship between biodiversity and ecosystem function has received a great deal of attention in ecological research and recent results, from re-analyses, suggest that ecosystem function improves with increases in phylogenetic diversity. However, many of these results have been generalized across a range of different species and clades, and plants with different evolutionary histories could display different relationships between biodiversity and ecosystem function. To experimentally test this hypothesis, we manipulated species richness and phylogenetic diversity using 26 species from two subgenera of the genus Eucalyptus (subgenus Eucalyptus and subgenus Symphyomyrtus. We found that plant biomass (a measurement of ecosystem function sometimes, but not always, responded to increases in species richness and phylogenetic diversity. Specifically, Symphyomyrtus plants showed a positive response while no comparable effect was observed for Eucalyptus plants, showing that responses to biodiversity can vary across different phylogenetic groups. Our results show that the impacts of evolutionary history may complicate the relationship between the diversity of plant communities and plant biomass.

Species composition, plant cover and diversity of recently reforested ...

African Journals Online (AJOL)

SERVER

2007-12-17

Dec 17, 2007 ... Deforestation, over-cultivation and rural growth have severely ... over-cultivation, plant populations changed, and biolo- ... Restoring community structure (e.g. species composi-tion ... plant diversity at all spatial scales are the criteria that should ..... taxonomic groups in recovering and restored forests.

Diversity of medicinal plants and anthropogenic threats in the ...

African Journals Online (AJOL)

Diversity of medicinal plants and anthropogenic threats in the Samburu Central Sub-County of Kenya. ... Biodiversity of medicinal plants and effects of human activities on availability of traditional ... There is, therefore need to adopt management strategies that enhance the conservation of these valuable natural resources.

Why we shouldn't underestimate the impact of plant functional diversity

Science.gov (United States)

Groner, V.; Raddatz, T.; Reick, C. H.; Claussen, M.

2017-12-01

We present a series of coupled land-atmosphere simulations with different combinations of plant functional types (PFTs) from mid-Holocene to preindustrial to show how plant functional diversity affects simulated climate-vegetation interaction under changing environmental conditions in subtropical Africa. Scientists nowadays agree that the establishment of the ``green'' Sahara was triggered by external changes in the Earth's orbit and amplified by internal feedback mechanisms. The timing and abruptness of the transition to the ``desert'' state are in turn still under debate. While some previous studies indicated an abrupt collapse of vegetation implying a strong climate-vegetation feedback, others suggested a gradual vegetation decline thereby questioning the existence of a strong climate-vegetation feedback. However, none of these studies explicitly accounted for the role of plant diversity. We show that the introduction or removal of a single PFT can bring about significant impacts on the simulated climate-vegetation system response to changing orbital forcing. While simulations with the standard set of PFTs show a gradual decrease of precipitation and vegetation cover over time, the reduction of plant functional diversity can cause either an abrupt decline of both variables or an even slower response to the external forcing. PFT composition seems to be the decisive factor for the system response to external forcing, and an increase in plant functional diversity does not necessarily increase the stability of the climate-vegetation system. From this we conclude that accounting for plant functional diversity in future studies - not only on palaeo climates - could significantly improve the understanding of climate-vegetation interaction in semi-arid regions, the predictability of the vegetation response to changing climate, and respectively, of the resulting feedback on precipitation.

Diversity of vascular plants of Piestany and surroundings

International Nuclear Information System (INIS)

Penzesova, A.; Galusova, T.

2013-01-01

In the present work is a summary of the results of floristic research aimed at determining diversity of vascular plants of Piestany and its surroundings. Plant taxa we determined using the designation keys. We have compiled a list of plant species occurring in the monitored area, we evaluated the selected botanical-phytogeographical characteristics of flora, we've put together a list of local protected, endangered and rare species and a list of local invasive and expansive species according to sources. (Authors)

Plant diversity and plant identity influence Fusarium communities in soil.

Science.gov (United States)

LeBlanc, Nicholas; Kinkel, Linda; Kistler, H Corby

2017-01-01

Fusarium communities play important functional roles in soil and in plants as pathogens, endophytes, and saprotrophs. This study tests how rhizosphere Fusarium communities may vary with plant species, changes in the diversity of the surrounding plant community, and soil physiochemical characteristics. Fusarium communities in soil associated with the roots of two perennial prairie plant species maintained as monocultures or growing within polyculture plant communities were characterized using targeted metagenomics. Amplicon libraries targeting the RPB2 locus were generated from rhizosphere soil DNAs and sequenced using pyrosequencing. Sequences were clustered into operational taxonomic units (OTUs) and assigned a taxonomy using the Evolutionary Placement Algorithm. Fusarium community composition was differentiated between monoculture and polyculture plant communities, and by plant species in monoculture, but not in polyculture. Taxonomic classification of the Fusarium OTUs showed a predominance of F. tricinctum and F. oxysporum as well of the presence of a clade previously only found in the Southern Hemisphere. Total Fusarium richness was not affected by changes in plant community richness or correlated with soil physiochemical characteristics. However, OTU richness within two predominant phylogenetic lineages within the genus was positively or negatively correlated with soil physiochemical characteristics among samples within each lineage. This work shows that plant species, plant community richness, and soil physiochemical characteristics may all influence the composition and richness of Fusarium communities in soil.

Soil stabilization linked to plant diversity and environmental context in coastal wetlands.

Science.gov (United States)

Ford, Hilary; Garbutt, Angus; Ladd, Cai; Malarkey, Jonathan; Skov, Martin W

2016-03-01

Plants play a pivotal role in soil stabilization, with above-ground vegetation and roots combining to physically protect soil against erosion. It is possible that diverse plant communities boost root biomass, with knock-on positive effects for soil stability, but these relationships are yet to be disentangled. We hypothesize that soil erosion rates fall with increased plant species richness, and test explicitly how closely root biomass is associated with plant diversity. We tested this hypothesis in salt marsh grasslands, dynamic ecosystems with a key role in flood protection. Using step-wise regression, the influences of biotic (e.g. plant diversity) and abiotic variables on root biomass and soil stability were determined for salt marshes with two contrasting soil types: erosion-resistant clay (Essex, southeast UK) and erosion-prone sand (Morecambe Bay, northwest UK). A total of 132 (30-cm depth) cores of natural marsh were extracted and exposed to lateral erosion by water in a re-circulating flume. Soil erosion rates fell with increased plant species richness ( R 2  = 0.55), when richness was modelled as a single explanatory variable, but was more important in erosion-prone ( R 2  = 0.44) than erosion-resistant ( R 2  = 0.18) regions. As plant species richness increased from two to nine species·m -2 , the coefficient of variation in soil erosion rate decreased significantly ( R 2  = 0.92). Plant species richness was a significant predictor of root biomass ( R 2  = 0.22). Step-wise regression showed that five key variables accounted for 80% of variation in soil erosion rate across regions. Clay-silt fraction and soil carbon stock were linked to lower rates, contributing 24% and 31%, respectively, to variation in erosion rate. In regional analysis, abiotic factors declined in importance, with root biomass explaining 25% of variation. Plant diversity explained 12% of variation in the erosion-prone sandy region. Our study indicates that soil stabilization

A Brief Review of Molecular Techniques to Assess Plant Diversity

Directory of Open Access Journals (Sweden)

Ibrahim A. Arif

2010-05-01

Full Text Available Massive loss of valuable plant species in the past centuries and its adverse impact on environmental and socioeconomic values has triggered the conservation of plant resources. Appropriate identification and characterization of plant materials is essential for the successful conservation of plant resources and to ensure their sustainable use. Molecular tools developed in the past few years provide easy, less laborious means for assigning known and unknown plant taxa. These techniques answer many new evolutionary and taxonomic questions, which were not previously possible with only phenotypic methods. Molecular techniques such as DNA barcoding, random amplified polymorphic DNA (RAPD, amplified fragment length polymorphism (AFLP, microsatellites and single nucleotide polymorphisms (SNP have recently been used for plant diversity studies. Each technique has its own advantages and limitations. These techniques differ in their resolving power to detect genetic differences, type of data they generate and their applicability to particular taxonomic levels. This review presents a basic description of different molecular techniques that can be utilized for DNA fingerprinting and molecular diversity analysis of plant species.

A Brief Review of Molecular Techniques to Assess Plant Diversity

Science.gov (United States)

Arif, Ibrahim A.; Bakir, Mohammad A.; Khan, Haseeb A.; Al Farhan, Ahmad H.; Al Homaidan, Ali A.; Bahkali, Ali H.; Sadoon, Mohammad Al; Shobrak, Mohammad

2010-01-01

Massive loss of valuable plant species in the past centuries and its adverse impact on environmental and socioeconomic values has triggered the conservation of plant resources. Appropriate identification and characterization of plant materials is essential for the successful conservation of plant resources and to ensure their sustainable use. Molecular tools developed in the past few years provide easy, less laborious means for assigning known and unknown plant taxa. These techniques answer many new evolutionary and taxonomic questions, which were not previously possible with only phenotypic methods. Molecular techniques such as DNA barcoding, random amplified polymorphic DNA (RAPD), amplified fragment length polymorphism (AFLP), microsatellites and single nucleotide polymorphisms (SNP) have recently been used for plant diversity studies. Each technique has its own advantages and limitations. These techniques differ in their resolving power to detect genetic differences, type of data they generate and their applicability to particular taxonomic levels. This review presents a basic description of different molecular techniques that can be utilized for DNA fingerprinting and molecular diversity analysis of plant species. PMID:20559503

Patterns of plant species diversity during succession under different disturbance regimes.

Science.gov (United States)

Denslow, Julie Sloan

1980-07-01

I suggest that between-community variations in diversity patterns during succession in plant communities are due to the effects of selection on life history strategies under different disturbance regimes. Natural disturbances to plant communities are simultaneously a source of mortality for some individuals and a source of establishment sites for others. The plant community consists of a mosaic of disturbance patches (gaps) of different environmental conditions. The composition of the mosaic is described by the size-frequency distribution of the gaps and is dependent on the rates and scales of disturbance. The life-history strategies of plant species dependent on some form of disturbance for establishment of propagules should reflect this size-frequency distribution of disturbance patches. An extension of island biogeographic theory to encompass relative habitat area predicts that a community should be most rich in species adapted to growth and establishment in the spatially most common patch types. Changes in species diversity during succession following large scale disturbance reflect the prevalent life history patterns under historically common disturbance regimes. Communities in which the greatest patch area is in large-scale clearings (e.g. following fire) are most diverse in species establishing seedlings in xeric, high light conditions. Species diversity decreases during succession. Communities in which such large patches are rare are characterized by a large number of species that reach the canopy through small gaps and realtively few which regenerate in the large clearings. Diversity increases during succession following a large scale disturbance.Evidence from communities characterized by different disturbance regimes is summarized from the literature. This hypothesis provides an evolutionary mechanism with which to examine the changes in plant community structure during succession. Diversity peaks occurring at "intermediate levels" of disturbance as

Decoupling factors affecting plant diversity and cover on extensive green roofs.

Science.gov (United States)

MacIvor, J Scott; Margolis, Liat; Puncher, Curtis L; Carver Matthews, Benjamin J

2013-11-30

Supplemental irrigation systems are often specified on green roofs to ensure plant cover and growth, both important components of green roof performance and aesthetics. Properties of the growing media environment too can alter the assemblage of plant species able to thrive. In this study we determine how plant cover, above ground biomass and species diversity are influenced by irrigation and growing media. Grass and forb vegetative cover and biomass were significantly greater in organic based growing media but there was no effect of supplemental irrigation, with two warm season grasses dominating in those treatments receiving no supplemental irrigation. On the other hand, plant diversity declined without irrigation in organic media, and having no irrigation in inorganic growing media resulted in almost a complete loss of cover. Sedum biomass was less in inorganic growing media treatments and species dominance shifted when growing media organic content increased. Our results demonstrate that supplemental irrigation is required to maintain plant diversity on an extensive green roof, but not necessarily plant cover or biomass. These results provide evidence that planting extensive green roofs with a mix of plant species can ensure the survival of some species; maintaining cover and biomass when supplemental irrigation is turned off to conserve water, or during extreme drought. Crown Copyright © 2013. Published by Elsevier Ltd. All rights reserved.

Herbivores and nutrients control grassland plant diversity via light limitation

Science.gov (United States)

Borer, Elizabeth T.; Seabloom, Eric W.; Gruner, Daniel S.; Harpole, W. Stanley; Hillebrand, Helmut; Lind, Eric M.; Alder, Peter B.; Alberti, Juan; Anderson, T. Michael; Bakker, Jonathan D.; Biederman, Lori; Blumenthal, Dana; Brown, Cynthia S.; Brudvig, Lars A.; Buckley, Yvonne M.; Cadotte, Marc; Chu, Cheng-Jin; Cleland, Elsa E.; Crawley, Michael J.; Daleo, Pedro; Damschen, Ellen Ingman; Davies, Kendi F.; DeCrappeo, Nicole M.; Du, Guozhen; Firn, Jennifer; Hautier, Yann; Heckman, Robert W.; Hector, Andy; HilleRisLambers, Janneke; Iribarne, Oscar; Klein, Julia A.; Knops, Johannes M.H.; La Pierre, Kimberly J.; Leakey, Andrew D.B.; Li, Wei; MacDougall, Andrew S.; McCulley, Rebecca L.; Melbourne, Brett A.; Mitchell, Charles E.; Moore, Joslin L.; Mortensen, Brent; O'Halloran, Lydia R.; Orrock, John L.; Pascual, Jesús; Prober, Suzanne M.; Pyke, David A.; Risch, Anita C.; Schuetz, Martin; Smith, Melinda D.; Stevens, Carly J.; Sullivan, Lauren L.; Williams, Ryan J.; Wragg, Peter D.; Wright, Justin P.; Yang, Louie H.

2014-01-01

Human alterations to nutrient cycles and herbivore communities are affecting global biodiversity dramatically. Ecological theory predicts these changes should be strongly counteractive: nutrient addition drives plant species loss through intensified competition for light, whereas herbivores prevent competitive exclusion by increasing ground-level light, particularly in productive systems. Here we use experimental data spanning a globally relevant range of conditions to test the hypothesis that herbaceous plant species losses caused by eutrophication may be offset by increased light availability due to herbivory. This experiment, replicated in 40 grasslands on 6 continents, demonstrates that nutrients and herbivores can serve as counteracting forces to control local plant diversity through light limitation, independent of site productivity, soil nitrogen, herbivore type and climate. Nutrient addition consistently reduced local diversity through light limitation, and herbivory rescued diversity at sites where it alleviated light limitation. Thus, species loss from anthropogenic eutrophication can be ameliorated in grasslands where herbivory increases ground-level light.

Links between plant litter chemistry, species diversity, and below-ground ecosystem function

OpenAIRE

Meier, Courtney L.; Bowman, William D.

2008-01-01

Decomposition is a critical source of plant nutrients, and drives the largest flux of terrestrial C to the atmosphere. Decomposing soil organic matter typically contains litter from multiple plant species, yet we lack a mechanistic understanding of how species diversity influences decomposition processes. Here, we show that soil C and N cycling during decomposition are controlled by the composition and diversity of chemical compounds within plant litter mixtures, rather than by simple metrics...

Assessment of plant species diversity based on hyperspectral indices at a fine scale.

Science.gov (United States)

Peng, Yu; Fan, Min; Song, Jingyi; Cui, Tiantian; Li, Rui

2018-03-19

Fast and nondestructive approaches of measuring plant species diversity have been a subject of excessive scientific curiosity and disquiet to environmentalists and field ecologists worldwide. In this study, we measured the hyperspectral reflectances and plant species diversity indices at a fine scale (0.8 meter) in central Hunshandak Sandland of Inner Mongolia, China. The first-order derivative value (FD) at each waveband and 37 hyperspectral indices were used to assess plant species diversity. Results demonstrated that the stepwise linear regression of FD can accurately estimate the Simpson (R 2  = 0.83), Pielou (R 2  = 0.87) and Shannon-Wiener index (R 2  = 0.88). Stepwise linear regression of FD (R 2  = 0.81, R 2  = 0.82) and spectral vegetation indices (R 2  = 0.51, R 2  = 0.58) significantly predicted the Margalef and Gleason index. It was proposed that the Simpson, Pielou and Shannon-Wiener indices, which are widely used as plant species diversity indicators, can be precisely estimated through hyperspectral indices at a fine scale. This research promotes the development of methods for assessment of plant diversity using hyperspectral data.

Effects of diversity and identity of the neighbouring plant community on the abundance of arthropods on individual ragwort (Jacobaea vulgaris) plants

NARCIS (Netherlands)

Kostenko, O.; Grootemaat, Saskia S.; Van der Putten, W.H.; Bezemer, T.M.

2012-01-01

The diversity of plant community can greatly affect the abundance and diversity of arthropods associated to that community, but can also influence the composition or abundance of arthropods on individual plants growing in that community. We sampled arthropods and recorded plant size of individual

Soil biota suppress positive plant diversity effects on productivity at high but not low soil fertility

NARCIS (Netherlands)

Luo, Shan; Deyn, De Gerlinde B.; Jiang, B.; Yu, Shixiao

2017-01-01

Plant community productivity commonly increases with increasing plant diversity, which is explained by complementarity among plant species in resource utilization (complementarity effect), or by selection of particularly productive plant species in diverse plant communities (selection effect).

Habitats as complex odour environments: how does plant diversity affect herbivore and parasitoid orientation?

Directory of Open Access Journals (Sweden)

Nicole Wäschke

Full Text Available Plant diversity is known to affect success of host location by pest insects, but its effect on olfactory orientation of non-pest insect species has hardly been addressed. First, we tested in laboratory experiments the hypothesis that non-host plants, which increase odour complexity in habitats, affect the host location ability of herbivores and parasitoids. Furthermore, we recorded field data of plant diversity in addition to herbivore and parasitoid abundance at 77 grassland sites in three different regions in Germany in order to elucidate whether our laboratory results reflect the field situation. As a model system we used the herb Plantago lanceolata, the herbivorous weevil Mecinus pascuorum, and its larval parasitoid Mesopolobus incultus. The laboratory bioassays revealed that both the herbivorous weevil and its larval parasitoid can locate their host plant and host via olfactory cues even in the presence of non-host odour. In a newly established two-circle olfactometer, the weeviĺs capability to detect host plant odour was not affected by odours from non-host plants. However, addition of non-host plant odours to host plant odour enhanced the weeviĺs foraging activity. The parasitoid was attracted by a combination of host plant and host volatiles in both the absence and presence of non-host plant volatiles in a Y-tube olfactometer. In dual choice tests the parasitoid preferred the blend of host plant and host volatiles over its combination with non-host plant volatiles. In the field, no indication was found that high plant diversity disturbs host (plant location by the weevil and its parasitoid. In contrast, plant diversity was positively correlated with weevil abundance, whereas parasitoid abundance was independent of plant diversity. Therefore, we conclude that weevils and parasitoids showed the sensory capacity to successfully cope with complex vegetation odours when searching for hosts.

Long-term effects of plant diversity and composition on soil nematode communities in grassland.

NARCIS (Netherlands)

Viketoft, M.; Bengtsson, J.; Sohlenius, B.; Berg, M.P.; Petchey, O.; Palmborg, C.; Huss-Daniel, K.

2009-01-01

An important component of plant-soil feedbacks is how plant species identity and diversity influence soil organism communities. We examine the effects of grassland plant species growing alone and together up to a richness of 12 species on nematode diversity and feeding group composition, eight years

Plant diversity and conservation in China: planning a strategic bioresource for a sustainable future.

Science.gov (United States)

Huang, Hongwen

2011-01-01

China is one of the richest countries for plant diversity with approximately 33 000 vascular plant species, ranking second in the world. However, the plant diversity in China is increasingly threatened, with an estimated 4000–5000 plant species being threatened or on the verge of extinction, making China, proportionally, one of the highest priorities for global plant biodiversity conservation. Coming in the face of the current ecological crisis, it is timely that China has launched China's Strategy for Plant Conservation (CSPC). China has increasingly recognized the importance of plant diversity in efforts to conserve and sustainably use its plant diversity. More than 3000 nature reserves have been established, covering approximately 16% of the land surface of China. These natural reserves play important roles in plant conservation, covering more than 85% of types of terrestrial natural ecosystems, 40% of types of natural wetlands, 20% of native forests and 65% of natural communities of vascular plants. Meanwhile, the flora conserved in botanical gardens is also extensive. A recent survey shows that the 10 largest botanical gardens have living collections of 43 502 taxa, with a total of 24 667 species in ex situ conservation. These provide an important reserve of plant resources for sustainable economic and social development in China. Plant diversity is the basis for bioresources and sustainable utilization. The 21st century is predicted to be an era of bio-economy driven by advances of bioscience and biotechnology. Bio-economy may become the fourth economy form after agricultural, industrial, and information and information technology economies, having far-reaching impacts on sustainable development in agriculture, forestry, environmental protection, light industry, food supply and health care and other micro-economy aspects. Thus, a strategic and forward vision for conservation of plant diversity and sustainable use of plant resources in the 21st century is of

Plant diversity in the homegardens of Karwar, Karnataka, India

Directory of Open Access Journals (Sweden)

SHIVANAND BHAT

2014-10-01

Full Text Available Bhat S, Bhandary MJ, Rajanna L. 2014. Plant diversity in the homegardens of Karwar, Karnataka, India. Biodiversitas 15: 229-235. A study was conducted in 50 selected home gardens of Karwar, Karnataka, India to document their floristic diversity and composition with regard to life forms and uses. As many as 210 species of flowering plants belonging to 69 families were recorded. Euphorbiaceae (13species, Apocynaceae (11spp., Cucurbitaceae (10 spp. and Fabaceae (10 spp. are the predominant families. Shrubs are the dominant life forms (73 spp. followed by trees (61 spp., herbs (42 spp. and climbers (24 spp.. Areca palm (Areca catechu, coconut palm (Cocos nucifera, mango tree (Mangifera indica, banana (Musa paradisiaca, shoe flower (Hibiscus rosa-sinensis and holy basil (Ocimum tenuiflorum are the most common plants occurring in all of the 50 studied gardens. 38% of the plant species are grown mainly for ornamental and aesthetic purposes while 33% of the species are used for obtaining food products like fruits and vegetables and 22% of the plants are mainly used for medicinal purposes. The predominance of ornamental species makes the home gardens of Karwar different from those occurring in other regions in which mostly food plants form the major component.

Genotypic and phenotypic diversity in populations of plant-probiotic Pseudomonas spp. colonizing roots

Science.gov (United States)

Picard, Christine; Bosco, Marco

2008-01-01

Several soil microorganisms colonizing roots are known to naturally promote the health of plants by controlling a range of plant pathogens, including bacteria, fungi, and nematodes. The use of theses antagonistic microorganisms, recently named plant-probiotics, to control plant-pathogenic fungi is receiving increasing attention, as they may represent a sustainable alternative to chemical pesticides. Many years of research on plant-probiotic microorganisms (PPM) have indicated that fluorescent pseudomonads producing antimicrobial compounds are largely involved in the suppression of the most widespread soilborne pathogens. Phenotype and genotype analysis of plant-probiotic fluorescent pseudomonads (PFP) have shown considerable genetic variation among these types of strains. Such variability plays an important role in the rhizosphere competence and the biocontrol ability of PFP strains. Understanding the mechanisms by which genotypic and phenotypic diversity occurs in natural populations of PFP could be exploited to choose those agricultural practices which best exploit the indigenous PFP populations, or to isolate new plant-probiotic strains for using them as inoculants. A number of different methods have been used to study diversity within PFP populations. Because different resolutions of the existing microbial diversity can be revealed depending on the approach used, this review first describes the most important methods used for the assessment of fluorescent Pseudomonas diversity. Then, we focus on recent data relating how differences in genotypic and phenotypic diversity within PFP communities can be attributed to geographic location, climate, soil type, soil management regime, and interactions with other soil microorganisms and host plants. It becomes evident that plant-related parameters exert the strongest influence on the genotypic and phenotypic variations in PFP populations.

Size, age and composition: characteristics of plant taxa as diversity predictors of gall-midges (Diptera: Cecidomyiidae

Directory of Open Access Journals (Sweden)

Walter S Araújo

2011-12-01

Full Text Available Many hypotheses have been proposed to explain the diversity of gall-midge insects (Diptera: Cecidomyiidae, some of them taking into account plant diversity. This study aims to test the importance of size, age and composition of host plant taxa in the diversity of Cecidomyiidae. For this we used inventories data on the diversity of galling and host plants in Brazil. We found that Asterales, Myrtales and Malpighiales, were the most important orders, with 34, 33 and 25, gall morphotypes, respectively. The most representative host families were Asteraceae (34 morphotypes, Myrtaceae (23 and Fabaceae (22. In general, the order size and the plant family were good predictors of the galling diversity, but not the taxon age. The most diverse host genera for gall-midges were Mikania, Eugenia and Styrax, with 15, 13 and nine galler species, respectively. The size of plant genera showed no significant relationship with the richness of Cecidomyiidae, contrary to the prediction of the plant taxon size hypothesis. The plant genera with the greatest diversity of galling insects are not necessarily those with the greatest number of species. These results indicate that some plant taxa have a high intrinsic richness of galling insects, suggesting that the plant species composition may be equally or more important for the diversity of gall-midges than the size or age of the host taxon. Rev. Biol. Trop. 59 (4: 1599- 1607. Epub 2011 December 01.

Severe plant invasions can increase mycorrhizal fungal abundance and diversity

DEFF Research Database (Denmark)

Lekberg, Ylva; Gibbons, Sean; Rosendahl, Søren

2013-01-01

Invasions by non-native plants can alter ecosystem functions and reduce native plant diversity, but relatively little is known about their effect on belowground microbial communities. We show that invasions by knapweed (Centaurea stoebe) and leafy spurge (Euphorbia esula, hereafter spurge...... plant provenance.The ISME Journal advance online publication, 14 March 2013; doi:10.1038/ismej.2013.41....

Plant Community Diversity After Herbicide Control of Spotted Knapweed

OpenAIRE

United States Department of Agriculture, Forest Service

1992-01-01

Herbicides were applied to four west-central Montana sites with light to moderate spotted knapweed (Centaurea maculosa Lam.) infestations. Althought knapweed suppression was high, 2 years after the spraying the communities were not converted to grass monocultures. No large declines in plant diversity were caused by the herbicides, and small depressions were probably transitory. By the third year, diversity had increased.

Root biomass and exudates link plant diversity with soil bacterial and fungal biomass

NARCIS (Netherlands)

Eisenhauer, Nico; Lanoue, Arnaud; Strecker, Tanja; Scheu, Stefan; Steinauer, Katja; Thakur, Madhav P.; Mommer, Liesje

2017-01-01

Plant diversity has been shown to determine the composition and functioning of soil biota. Although root-derived organic inputs are discussed as the main drivers of soil communities, experimental evidence is scarce. While there is some evidence that higher root biomass at high plant diversity

Forest climbing plants of West Africa: diversity, ecology and management

NARCIS (Netherlands)

Bongers, F.J.J.M.; Parren, M.P.E.; Traoré, D.

2005-01-01

Climbing plants, including lianas, represent a fascinating component of the ecology of tropical forests. This book focuses on the climbing plants of West African forests. Based on original research, it presents information on the flora (including a checklist), diversity (with overviews at several

Relationships between Plant Diversity and the Abundance and α-Diversity of Predatory Ground Beetles (Coleoptera: Carabidae) in a Mature Asian Temperate Forest Ecosystem

Science.gov (United States)

Zou, Yi; Sang, Weiguo; Bai, Fan; Axmacher, Jan Christoph

2013-01-01

A positive relationship between plant diversity and both abundance and diversity of predatory arthropods is postulated by the Enemies Hypothesis, a central ecological top-down control hypothesis. It has been supported by experimental studies and investigations of agricultural and grassland ecosystems, while evidence from more complex mature forest ecosystems is limited. Our study was conducted on Changbai Mountain in one of the last remaining large pristine temperate forest environments in China. We used predatory ground beetles (Coleoptera: Carabidae) as target taxon to establish the relationship between phytodiversity and their activity abundance and diversity. Results showed that elevation was the only variable included in both models predicting carabid activity abundance and α-diversity. Shrub diversity was negatively and herb diversity positively correlated with beetle abundance, while shrub diversity was positively correlated with beetle α-diversity. Within the different forest types, a negative relationship between plant diversity and carabid activity abundance was observed, which stands in direct contrast to the Enemies Hypothesis. Furthermore, plant species density did not predict carabid α-diversity. In addition, the density of herbs, which is commonly believed to influence carabid movement, had little impact on the beetle activity abundance recorded on Changbai Mountain. Our study indicates that in a relatively large and heterogeneous mature forest area, relationships between plant and carabid diversity are driven by variations in environmental factors linked with altitudinal change. In addition, traditional top-down control theories that are suitable in explaining diversity patterns in ecosystems of low diversity appear to play a much less pronounced role in highly complex forest ecosystems. PMID:24376582

Relationships between plant diversity and the abundance and α-diversity of predatory ground beetles (Coleoptera: Carabidae) in a mature Asian temperate forest ecosystem.

Science.gov (United States)

Zou, Yi; Sang, Weiguo; Bai, Fan; Axmacher, Jan Christoph

2013-01-01

A positive relationship between plant diversity and both abundance and diversity of predatory arthropods is postulated by the Enemies Hypothesis, a central ecological top-down control hypothesis. It has been supported by experimental studies and investigations of agricultural and grassland ecosystems, while evidence from more complex mature forest ecosystems is limited. Our study was conducted on Changbai Mountain in one of the last remaining large pristine temperate forest environments in China. We used predatory ground beetles (Coleoptera: Carabidae) as target taxon to establish the relationship between phytodiversity and their activity abundance and diversity. Results showed that elevation was the only variable included in both models predicting carabid activity abundance and α-diversity. Shrub diversity was negatively and herb diversity positively correlated with beetle abundance, while shrub diversity was positively correlated with beetle α-diversity. Within the different forest types, a negative relationship between plant diversity and carabid activity abundance was observed, which stands in direct contrast to the Enemies Hypothesis. Furthermore, plant species density did not predict carabid α-diversity. In addition, the density of herbs, which is commonly believed to influence carabid movement, had little impact on the beetle activity abundance recorded on Changbai Mountain. Our study indicates that in a relatively large and heterogeneous mature forest area, relationships between plant and carabid diversity are driven by variations in environmental factors linked with altitudinal change. In addition, traditional top-down control theories that are suitable in explaining diversity patterns in ecosystems of low diversity appear to play a much less pronounced role in highly complex forest ecosystems.

Relationships between plant diversity and the abundance and α-diversity of predatory ground beetles (Coleoptera: Carabidae in a mature Asian temperate forest ecosystem.

Directory of Open Access Journals (Sweden)

Yi Zou

Full Text Available A positive relationship between plant diversity and both abundance and diversity of predatory arthropods is postulated by the Enemies Hypothesis, a central ecological top-down control hypothesis. It has been supported by experimental studies and investigations of agricultural and grassland ecosystems, while evidence from more complex mature forest ecosystems is limited. Our study was conducted on Changbai Mountain in one of the last remaining large pristine temperate forest environments in China. We used predatory ground beetles (Coleoptera: Carabidae as target taxon to establish the relationship between phytodiversity and their activity abundance and diversity. Results showed that elevation was the only variable included in both models predicting carabid activity abundance and α-diversity. Shrub diversity was negatively and herb diversity positively correlated with beetle abundance, while shrub diversity was positively correlated with beetle α-diversity. Within the different forest types, a negative relationship between plant diversity and carabid activity abundance was observed, which stands in direct contrast to the Enemies Hypothesis. Furthermore, plant species density did not predict carabid α-diversity. In addition, the density of herbs, which is commonly believed to influence carabid movement, had little impact on the beetle activity abundance recorded on Changbai Mountain. Our study indicates that in a relatively large and heterogeneous mature forest area, relationships between plant and carabid diversity are driven by variations in environmental factors linked with altitudinal change. In addition, traditional top-down control theories that are suitable in explaining diversity patterns in ecosystems of low diversity appear to play a much less pronounced role in highly complex forest ecosystems.

Disturbance in dry coastal dunes in Denmark promotes diversity of plants and arthropods

DEFF Research Database (Denmark)

Brunbjerg, Ane Kirstine; Jørgensen, Gorm Pilgaard; Nielsen, Kristian Mandsberg

2015-01-01

of three disturbance types (burning, trampling and blowouts) on plant and arthropod species richness and composition in dry coastal dunes in Jutland, Denmark. Environmental variables, plant presence–absence and arthropod abundance were measured in 150 1 × 2 m plots along transects in blowouts, burned areas...... on plant and arthropod composition. Indicator species analysis revealed plant and arthropod species indicative for different disturbances. Plant and arthropod species richness and the number of annual plant species generally increased with disturbance, and plant and arthropod richness and composition...... responded differently to different disturbances. Arthropod communities were more diverse in disturbed plots and hosted species often found in early successional habitats of potential conservation value. Disturbance promoted β-diversity, but affected plants more than arthropods, likely because...

Simulated geographic variations of plant species richness, evenness and abundance using climatic constraints on plant functional diversity

International Nuclear Information System (INIS)

Kleidon, Axel; Pavlick, Ryan; Reu, Bjoern; Adams, Jonathan

2009-01-01

Among the most pronounced large-scale geographic patterns of plant biodiversity are the increase in plant species richness towards the tropics, a more even distribution of the relative abundances of plant species in the tropics, and a nearly log-normal relative abundance distribution. Here we use an individual-based plant diversity model that relates climatic constraints to feasible plant growth strategies to show that all three basic diversity patterns can be predicted merely from the climatic constraints acting upon plant ecophysiological trade-offs. Our model predicts that towards objectively 'harsher' environments, the range of feasible growth strategies resulting in reproductive plants is reduced, thus resulting in lower functional plant species richness. The reduction of evenness is attributed to a more rapid decline in productivity from the most productive to less productive plant growth strategies since the particular setup of the strategy becomes more important in maintaining high productivity in harsher environments. This approach is also able to reproduce the increase in the deviation from a log-normal distribution towards more evenly distributed communities of the tropics. Our results imply that these general biodiversity relationships can be understood primarily by considering the climatic constraints on plant ecophysiological trade-offs.

[Diversity and distribution of the threatened medicinal vascular plants in Lancang].

Science.gov (United States)

Chi, Xiu-Lian; Yuan, Yi-Kai; Fang, Bo; Zhang, Xiao-Bo; Yang, Han-Yu; Zhao, Zhi-Ping; Li, Guo; Fu, Kai-Cong; Guo, Lan-Ping; Huang, Lu-Qi

2017-11-01

The rich diversity in medicinal plants provides an important material basic for the development of Traditional Chinese medicine in China. It is important to explore the present situation of medicinal plants within special regions in order to provide scientific instructions for their sustainable protection and exploitation and utilization. In this study, we carried out the field survey according to the guideline of national survey of Chinese material medica resources and the guideline of plant species diversity survey and estimation at county level with the line transect method. With the field surveyed data, we explored the diversity and distribution of the threatened medicinal vascular plants in Lancang. We found that there were 33 species of the threatened medicinal vascular plants in this county. These species were from 23 genera and 17 families, and were composed of one critical endangered, 10 endangered and 22 vulnerable species. They were widely distributed across the whole county and were most concentrated in the town of Nuozhadu, Fazhanhe, Nuofu and Zhutang, which were located in the southeastern, southwestern and western of Lancang, respectively. We also found that the plant species richness followed a unimodal pattern along elevation. In addition, we found that the areas of Nuozhadu Nature Reserve in Lancang only covered six threatened medicinal vascular plants, while most of the regions with high species richness were not well protected. Therefore, we proposed to make more efforts to improve the protection measurements in order to better protect and utilize the medicinal plants in Lancang. Copyright© by the Chinese Pharmaceutical Association.

Diversity of vascular plants of Piestany and surroundings (presentation)

International Nuclear Information System (INIS)

Penzesova, A.; Galusova, T.

2013-01-01

In this presentation is a summary of the results of floristic research aimed at determining diversity of vascular plants of Piestany and its surroundings. Plant taxa we determined using the designation keys. We have compiled a list of plant species occurring in the monitored area, we evaluated the selected botanical-phytogeographical characteristics of flora, we've put together a list of local protected, endangered and rare species and a list of local invasive and expansive species according to sources. (Authors)

The local knowledge of medicinal plants trader and diversity of medicinal plants in the Kabanjahe traditional market, North Sumatra, Indonesia.

Science.gov (United States)

Silalahi, Marina; Nisyawati; Walujo, Eko Baroto; Supriatna, Jatna; Mangunwardoyo, Wibowo

2015-12-04

Market is the main place for transactions of medicinal plants and traditional ingredients by local community in the Karo regency, North Sumatra, Indonesia. This is the first study to document the local knowledge of traders on and the diversity of the medicinal plants. The investigation was carried out in the Kabanjahe traditional market, in the Karo regency. The research goal was to reveal the local knowledge, diversity and utilization of medicinal plants, which have been traded in the Kabanjahe traditional market, as a basis for conservation efforts. The study was conducted through ethnobotanical approach using market surveys. All traders of medicinal plants were surveyed applying in-depth interviews and participative observations. Data were analyzed qualitatively using descriptive statistics. The diversity of medicinal plants was expressed in term of the Shannon-Wiener diversity index (H'), whereas the similarity among traders was indicated by Jaccard index (Ji). Traders of medicinal plants stored the simplicia of medicinal plants in chest of drawers, plastic baskets, plastic bags, and in the air by suspending them from the the stall ceilings. We recorded 344 species, 217 genera and 90 families of medicinal plants. Those that were sold mostly belong to Zingeberaceae (20 species), Poaceae (19 species), and Asclepiadaceae (17 species), and the species received high consumers demand, mostly belong to Zingiberaceae, Rutaceae, and Asclepidiaceae. Asclepidiaceae was used to treat diseases like cancer and heart problems. The Shannon-Wiener diversity index of medicinal plants at the Kabanjahe traditional market was high (H'= 5.637). The high Jaccard similarity index (Ji>0.56) suggested that the traders were trading similar species of medicinal plants. Kabanjahe traditional market is the center for the sale of of medicinal plants as traditional ingredients. Several species are well known for their pharmacological properties but others, [such as: Dischidia imbricata (Blume

Ex situ conservation of plant diversity in the world's botanic gardens.

Science.gov (United States)

Mounce, Ross; Smith, Paul; Brockington, Samuel

2017-10-01

Botanic gardens conserve plant diversity ex situ and can prevent extinction through integrated conservation action. Here we quantify how that diversity is conserved in ex situ collections across the world's botanic gardens. We reveal that botanic gardens manage at least 105,634 species, equating to 30% of all plant species diversity, and conserve over 41% of known threatened species. However, we also reveal that botanic gardens are disproportionately temperate, with 93% of species held in the Northern Hemisphere. Consequently, an estimated 76% of species absent from living collections are tropical in origin. Furthermore, phylogenetic bias ensures that over 50% of vascular genera, but barely 5% of non-vascular genera, are conserved ex situ. While botanic gardens are discernibly responding to the threat of species extinction, just 10% of network capacity is devoted to threatened species. We conclude that botanic gardens play a fundamental role in plant conservation, but identify actions to enhance future conservation of biodiversity.

Monitoring shifts in plant diversity in response to climate change: A method for landscapes

Science.gov (United States)

Stohlgren, T.J.; Owen, A.J.; Lee, M.

2000-01-01

Improved sampling designs are needed to detect, monitor, and predict plant migrations and plant diversity changes caused by climate change and other human activities. We propose a methodology based on multi-scale vegetation plots established across forest ecotones which provide baseline data on patterns of plant diversity, invasions of exotic plant species, and plant migrations at landscape scales in Rocky Mountain National Park, Colorado, USA. We established forty two 1000-m2 plots in relatively homogeneous forest types and the ecotones between them on 14 vegetation transects. We found that 64% of the variance in understory species distributions at landscape scales were described generally by gradients of elevation and under-canopy solar radiation. Superimposed on broad-scale climatic gradients are small-scale gradients characterized by patches of light, pockets of fertile soil, and zones of high soil moisture. Eighteen of the 42 plots contained at least one exotic species; monitoring exotic plant invasions provides a means to assess changes in native plant diversity and plant migrations. Plant species showed weak affinities to overstory vegetation types, with 43% of the plant species found in three or more vegetation types. Replicate transects along several environmental gradients may provide the means to monitor plant diversity and species migrations at landscape scales because: (1) ecotones may play crucial roles in expanding the geophysiological ranges of many plant species; (2) low affinities of understory species to overstory forest types may predispose vegetation types to be resilient to rapid environmental change; and (3) ecotones may help buffer plant species from extirpation and extinction.

Plant diversity in a changing world: Status, trends, and conservation needs

Directory of Open Access Journals (Sweden)

Richard T. Corlett

2016-02-01

Full Text Available The conservation of plants has not generated the sense of urgency—or the funding—that drives the conservation of animals, although plants are far more important for us. There are an estimated 500,000 species of land plants (angiosperms, gymnosperms, ferns, lycophytes, and bryophytes, with diversity strongly concentrated in the humid tropics. Many species are still unknown to science. Perhaps a third of all land plants are at risk of extinction, including many that are undescribed, or are described but otherwise data deficient. There have been few known global extinctions so far, but many additional species have not been recorded recently and may be extinct. Although only a minority of plant species have a specific human use, many more play important roles in natural ecosystems and the services they provide, and rare species are more likely to have unusual traits that could be useful in the future. The major threats to plant diversity include habitat loss, fragmentation, and degradation, overexploitation, invasive species, pollution, and anthropogenic climate change. Conservation of plant diversity is a massive task if viewed globally, but the combination of a well-designed and well-managed protected area system and ex situ gap-filling and back-up should work anywhere. The most urgent needs are for the completion of the global botanical inventory and an assessment of the conservation status of the 94% of plant species not yet evaluated, so that both in and ex situ conservation can be targeted efficiently. Globally, the biggest conservation gap is in the hyperdiverse lowland tropics and this is where attention needs to be focused.

Expanding Kenya's protected areas under the Convention on Biological Diversity to maximize coverage of plant diversity.

Science.gov (United States)

Scherer, Laura; Curran, Michael; Alvarez, Miguel

2017-04-01

Biodiversity is highly valuable and critically threatened by anthropogenic degradation of the natural environment. In response, governments have pledged enhanced protected-area coverage, which requires scarce biological data to identify conservation priorities. To assist this effort, we mapped conservation priorities in Kenya based on maximizing alpha (species richness) and beta diversity (species turnover) of plant communities while minimizing economic costs. We used plant-cover percentages from vegetation surveys of over 2000 plots to build separate models for each type of diversity. Opportunity and management costs were based on literature data and interviews with conservation organizations. Species richness was predicted to be highest in a belt from Lake Turkana through Mount Kenya and in a belt parallel to the coast, and species turnover was predicted to be highest in western Kenya and along the coast. Our results suggest the expanding reserve network should focus on the coast and northeastern provinces of Kenya, where new biological surveys would also fill biological data gaps. Meeting the Convention on Biological Diversity target of 17% terrestrial coverage by 2020 would increase representation of Kenya's plant communities by 75%. However, this would require about 50 times more funds than Kenya has received thus far from the Global Environment Facility. © 2016 Society for Conservation Biology.

Ecological Effects of Roads on the Plant Diversity of Coastal Wetland in the Yellow River Delta

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Yunzhao Li

2014-01-01

Full Text Available The 26 sample sites in 7 study plots adjacent to asphalt road and earth road in coastal wetland in the Yellow River Delta were selected to quantify plant diversity using quadrat sampling method in plant bloom phase of July and August 2012. The indice of βT and Jaccard’s coefficient were applied to evaluate the species diversity. The results showed that the plant diversities and alien plants were high in the range of 0–20 m to the road verge. There were more exotics and halophytes in plots of asphalt roadside than that of earth roadside. However, proportion of halophytes in habitats of asphalt roadsides was lower than that of earth roadside. By comparing β-diversity, there were more common species in the asphalt roadsides than that in the earth roadsides. The similarity of plant communities in studied plots of asphalt roadsides and earth roadsides increased with increasing the distance to road verge. The effect range of roads for plant diversity in study region was about 20 m to road verge. Our results indicate that the construction and maintenance of roads in wetland could increase the plant species diversities of communities and risk of alien species invasion.

Ecological Effects of Roads on the Plant Diversity of Coastal Wetland in the Yellow River Delta

Science.gov (United States)

Li, Yunzhao; Du, Siyao; Han, Guangxuan; Qu, Fanzhu; Wang, Guangmei; Fu, Yuqin; Zhan, Chao

2014-01-01

The 26 sample sites in 7 study plots adjacent to asphalt road and earth road in coastal wetland in the Yellow River Delta were selected to quantify plant diversity using quadrat sampling method in plant bloom phase of July and August 2012. The indice of β T and Jaccard's coefficient were applied to evaluate the species diversity. The results showed that the plant diversities and alien plants were high in the range of 0–20 m to the road verge. There were more exotics and halophytes in plots of asphalt roadside than that of earth roadside. However, proportion of halophytes in habitats of asphalt roadsides was lower than that of earth roadside. By comparing β-diversity, there were more common species in the asphalt roadsides than that in the earth roadsides. The similarity of plant communities in studied plots of asphalt roadsides and earth roadsides increased with increasing the distance to road verge. The effect range of roads for plant diversity in study region was about 20 m to road verge. Our results indicate that the construction and maintenance of roads in wetland could increase the plant species diversities of communities and risk of alien species invasion. PMID:25147872

Acacia sieberiana Effects on Soil Properties and Plant Diversity in Songa Pastures, Rwanda

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C. P. Mugunga

2013-01-01

Full Text Available Effects of A. sieberiana trees on soil properties and plant diversity were investigated in Songa pastures, Rwanda. Tree characteristics and crown architecture of A. sieberiana were studied. Soil properties were assessed and plants were identified under and away from tree crowns. Counts of individual plants/species were done only under tree crowns. Nitrogen, P, and K were analysed in the soil, grass, and A. sieberiana leaves. Plant diversity was determined using Simpson's diversity index. Data were subjected to ANOVA. Soil organic carbon (SOC, cation exchange capacity (CEC, Ca2+, N and pH, and plant diversity were higher in soils under tree canopies than in open areas. Tree leaves were significantly richer in N and poorer in P and K as compared to grasses. Tree crowns grew wider and horizontal and developed intertwined secondary branching, reducing light intensity to as low as 38% under tree canopies compared to the open pasture. At 3 trees/ha stocking, A. sieberiana trees shaded 0.18 ha and herbaceous plants and grasses unpalatable to livestock dominated under tree canopies. A tradeoff of A. sieberiana tree value versus the loss of palatable grass due to tree presence needs to be assessed to decide whether the trees should be included in pastures and if yes, the apporpriate stocking identified.

Using dark diversity and plant characteristics to guide conservation and restoration

DEFF Research Database (Denmark)

Moeslund, Jesper Erenskjold; Brunbjerg, Ane Kirstine; Clausen, Kevin

2017-01-01

more often than others, although this is important knowledge for restoration and conservation actions. 2. We applied the concept to a massive national (Danish) plant diversity data base, containing 236 923 records from 15 160 surveys involving 564 species. This enabled the first geographically...... comprehensive (43 000 km2) assessment of dark diversity, at a spatial resolution relevant for conservation and restoration planning (78 m2) across multiple terrestrial habitats, thereby maximising the practical applications of this concept. The probability for a given plant species to belong to the dark...

Enhancing (crop) plant photosynthesis by introducing novel genetic diversity.

Science.gov (United States)

Dann, Marcel; Leister, Dario

2017-09-26

Although some elements of the photosynthetic light reactions might appear to be ideal, the overall efficiency of light conversion to biomass has not been optimized during evolution. Because crop plants are depleted of genetic diversity for photosynthesis, efforts to enhance its efficiency with respect to light conversion to yield must generate new variation. In principle, three sources of natural variation are available: (i) rare diversity within extant higher plant species, (ii) photosynthetic variants from algae, and (iii) reconstruction of no longer extant types of plant photosynthesis. Here, we argue for a novel approach that outsources crop photosynthesis to a cyanobacterium that is amenable to adaptive evolution. This system offers numerous advantages, including a short generation time, virtually unlimited population sizes and high mutation rates, together with a versatile toolbox for genetic manipulation. On such a synthetic bacterial platform, 10 000 years of (crop) plant evolution can be recapitulated within weeks. Limitations of this system arise from its unicellular nature, which cannot reproduce all aspects of crop photosynthesis. But successful establishment of such a bacterial host for crop photosynthesis promises not only to enhance the performance of eukaryotic photosynthesis but will also reveal novel facets of the molecular basis of photosynthetic flexibility.This article is part of the themed issue 'Enhancing photosynthesis in crop plants: targets for improvement'. © 2017 The Author(s).

The influence of canopy-layer composition on understory plant diversity in southern temperate forests

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Luciana Mestre

2017-05-01

Full Text Available Background Understory plants represents the largest component of biodiversity in most forest ecosystems and plays a key role in forest functioning. Despite their importance, the influence of overstory-layer composition on understory plant diversity is relatively poorly understood within deciduous-evergreen broadleaved mixed forests. The aim of this work was to evaluate how tree overstory-layer composition influences on understory-layer diversity in three forest types (monospecific deciduous Nothofagus pumilio (Np, monospecific evergreen Nothofagus betuloides (Nb, and mixed N. pumilio-N. betuloides (M forests, comparing also between two geographical locations (coast and mountain to estimate differences at landscape level. Results We recorded 46 plant species: 4 ferns, 12 monocots, and 30 dicots. Canopy-layer composition influences the herb-layer structure and diversity in two different ways: while mixed forests have greater similarity to evergreen forests in the understory structural features, deciduous and mixed were similar in terms of the specific composition of plant assemblage. Deciduous pure stands were the most diverse, meanwhile evergreen stands were least diverse. Lack of exclusive species of mixed forest could represent a transition where evergreen and deciduous communities meet and integrate. Moreover, landscape has a major influence on the structure, diversity and richness of understory vegetation of pure and mixed forests likely associated to the magnitude and frequency of natural disturbances, where mountain forest not only had highest herb-layer diversity but also more exclusive species. Conclusions Our study suggests that mixed Nothofagus forest supports coexistence of both pure deciduous and pure evergreen understory plant species and different assemblages in coastal and mountain sites. Maintaining the mixture of canopy patch types within mixed stands will be important for conserving the natural patterns of understory plant

The effects of plant diversity on nitrous oxide emissions in hydroponic microcosms

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Sun, Hongying; Zhang, Chongbang; Song, Changchun; Chang, Scott X.; Gu, Baojing; Chen, Zhengxin; Peng, Changhui; Chang, Jie; Ge, Ying

2013-10-01

Previous studies have shown that plant diversity can improve the wastewater purification efficiency of constructed wetlands (CWs), but its effect on the nitrous oxide (N2O) emission in CWs has been unknown. To investigate the effect of plant diversity on the N2O emission, we established four plant species richness levels (each level containing 1, 2, 3 and 4 species, respectively) by using 96 hydroponic microcosms. Results showed that plant species richness enhanced the N2O emission, ranging from 27.1 to 115.4 μg N2O m-2 d-1, and improved nitrate removal (P 0.05), but improved nitrogen removal (P < 0.001). Hence, our study highlights the importance of both plant species richness and species identity in mediating the N2O emission and nitrogen removal in CWs.

Grazing intensity on the plant diversity of alpine meadow in the eastern Tibetan plateau

Directory of Open Access Journals (Sweden)

Wu Ning

2004-04-01

Full Text Available Because ofthe remoteness and harsh conditions of the high-altitude rangelands on the eastern Tibetan Plateau, the relationship between yak grazing and plant diversity has not been so clear although livestock increase was thought as the main issue leading to the degradation of rangeland. In the debate of rangeland degradation, biodiversity loss has been assumed as one of the indicators in the last two decades. In this paper authors measured the effects of different grazing intensities on the plant diversity and the structure of Kobresia pygmaea community in the case-study area, northwestern Sichuan. The results indicated that plant diversity of alpine meadow has different changing trends respectively with the change of grazing intensity and seasons. In June the highest plant diversity occurred in the intensively grazed (HG plots, but in July and September species biodiversity index of slightly grazed (LG plots is higher than other experimental treatments. In August the intermediate grazed (IG plots has the highest biodiversity index. Moreover, it was found that intensively grazing always leads to the increase of plant density, but meanwhile the decrease of community height, coverage and biomass. Over-grazing can change the community structure and lead to the succession from Kobresia pygmaea dominated community to Poa pratensis dominated. Analyzing results comprehensively, it can be suggested that the relationship between grazing intensity and plant diversity is not linear, i.e. diversity index is not as good as other characteristics of community structure to evaluate rangeland degradation on the high altitude situation. The change of biodiversity is so complicated that it can not be explained with the simple corresponding causality.

Mobilization of interactions between functional diversity of plant and soil organisms on nitrogen availability and use

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Drut, Baptiste; Cassagne, Nathalie; Cannavacciuolo, Mario; Brauman, Alain; Le Floch, Gaëtan; Cobo, Jose; Fustec, Joëlle

2017-04-01

Keywords: legumes, earthworms, microorganisms, nitrogen, interactions Both aboveground and belowground biodiversity and their interactions can play an important role in crop productivity. Plant functional diversity, such as legume based intercrops have been shown to improve yields through plant complementarity for nitrogen use (Corre-Hellou et al., 2006). Moreover, plant species or plant genotype may influence the structure of soil microorganism communities through the composition of rhizodeposits in the rhizosphere (Dennis et al., 2010). Belowground diversity can also positively influence plant performance especially related to functional dissimilarity between soil organisms (Eisenhauer, 2012). Earthworms through their burrowing activity influence soil microbial decomposers and nutrient availability and have thus been reported to increase plant growth (Brown, 1995; Brown et al., 2004). We hypothesize that i) plant functional (genetic and/or specific) diversity associated to functional earthworms diversity are key drivers of interactions balance to improve crop performances and ii) the improvement of plant performances can be related to change in the structure of soil microorganism communities due to the diversity of rhizodeposits and the burrowing activity of earthworms. In a first mesocosm experiment, we investigated the effect of a gradient of plant diversity - one cultivar of wheat (Triticum aestivum L.), 3 different wheat cultivars, and 3 different cultivars intercropped with clover (Trifolium hybridum L.) - and the presence of one (endogeic) or two (endogeic and anecic) categories of earthworms on biomass and nitrogen accumulation of wheat. In a second mesocosm experiment, we investigated the influence of three species with different rhizodeposition - wheat, rapeseed (Brassica napus L. ) and faba bean (Vicia faba L.) in pure stand or intercropped - and the presence of endogeic earthworms on microbial activity and nitrogen availability. In the first experiment

Temporal dynamics of soil nematode communities in a grassland plant diversity experiment.

NARCIS (Netherlands)

Viketoft, M.; Sohlenius, B.; Bostrom, S.; Palmborg, C.; Bengtsson, J.; Berg, M.P.; Kuss-Danell, K.

2011-01-01

We report here on an 8-year study examining links between plant and nematode communities in a grassland plant diversity experiment, located in the north of Sweden on previous agricultural soil. The examined plots contained 1, 4 and 12 common grassland plant species from three functional groups;

The beta-diversity of species interactions: Untangling the drivers of geographic variation in plant-pollinator diversity and function across scales.

Science.gov (United States)

Burkle, Laura A; Myers, Jonathan A; Belote, R Travis

2016-01-01

Geographic patterns of biodiversity have long inspired interest in processes that shape the assembly, diversity, and dynamics of communities at different spatial scales. To study mechanisms of community assembly, ecologists often compare spatial variation in community composition (beta-diversity) across environmental and spatial gradients. These same patterns inspired evolutionary biologists to investigate how micro- and macro-evolutionary processes create gradients in biodiversity. Central to these perspectives are species interactions, which contribute to community assembly and geographic variation in evolutionary processes. However, studies of beta-diversity have predominantly focused on single trophic levels, resulting in gaps in our understanding of variation in species-interaction networks (interaction beta-diversity), especially at scales most relevant to evolutionary studies of geographic variation. We outline two challenges and their consequences in scaling-up studies of interaction beta-diversity from local to biogeographic scales using plant-pollinator interactions as a model system in ecology, evolution, and conservation. First, we highlight how variation in regional species pools may contribute to variation in interaction beta-diversity among biogeographic regions with dissimilar evolutionary history. Second, we highlight how pollinator behavior (host-switching) links ecological networks to geographic patterns of plant-pollinator interactions and evolutionary processes. Third, we outline key unanswered questions regarding the role of geographic variation in plant-pollinator interactions for conservation and ecosystem services (pollination) in changing environments. We conclude that the largest advances in the burgeoning field of interaction beta-diversity will come from studies that integrate frameworks in ecology, evolution, and conservation to understand the causes and consequences of interaction beta-diversity across scales. © 2016 Botanical

Plant species diversity as a driver of early succession in abandoned fields: a multi-site approach.

Science.gov (United States)

Van der Putten, W H; Mortimer, S R; Hedlund, K; Van Dijk, C; Brown, V K; Lepä, J; Rodriguez-Barrueco, C; Roy, J; Diaz Len, T A; Gormsen, D; Korthals, G W; Lavorel, S; Regina, I Santa; Smilauer, P

2000-07-01

Succession is one of the most studied processes in ecology and succession theory provides strong predictability. However, few attempts have been made to influence the course of succession thereby testing the hypothesis that passing through one stage is essential before entering the next one. At each stage of succession ecosystem processes may be affected by the diversity of species present, but there is little empirical evidence showing that plant species diversity may affect succession. On ex-arable land, a major constraint of vegetation succession is the dominance of perennial early-successional (arable weed) species. Our aim was to change the initial vegetation succession by the direct sowing of later-successional plant species. The hypothesis was tested that a diverse plant species mixture would be more successful in weed suppression than species-poor mixtures. In order to provide a robust test including a wide range of environmental conditions and plant species, experiments were carried out at five sites across Europe. At each site, an identical experiment was set up, albeit that the plant species composition of the sown mixtures differed from site to site. Results of the 2-year study showed that diverse plant species mixtures were more effective at reducing the number of natural colonisers (mainly weeds from the seed bank) than the average low-diversity treatment. However, the effect of the low-diversity treatment depended on the composition of the species mixture. Thus, the effect of enhanced species diversity strongly depended on the species composition of the low-diversity treatments used for comparison. The effects of high-diversity plant species mixtures on weed suppression differed between sites. Low-productivity sites gave the weakest response to the diversity treatments. These differences among sites did not change the general pattern. The present results have implications for understanding biological invasions. It has been hypothesised that alien

Above- and below-ground effects of plant diversity depend on species origin

DEFF Research Database (Denmark)

Kuebbing, Sara E.; Classen, Aimee Taylor; Sanders, Nate

2015-01-01

-interaction models to describe how species' interactions influenced diversity-productivity relationships. Communities with more species had higher total biomass than did monoculture communities, but native and nonnative communities diverged in root : shoot ratios and the mechanism responsible for increased......Although many plant communities are invaded by multiple nonnative species, we have limited information on how a species' origin affects ecosystem function. We tested how differences in species richness and origin affect productivity and seedling establishment. We created phylogenetically paired...... native and nonnative plant communities in a glasshouse experiment to test diversity-productivity relationships and responsible mechanisms (i.e. selection or complementarity effects). Additionally, we tested how productivity and associated mechanisms influenced seedling establishment. We used diversity...

Diversity, expansion, and evolutionary novelty of plant DNA-binding transcription factor families.

Science.gov (United States)

Lehti-Shiu, Melissa D; Panchy, Nicholas; Wang, Peipei; Uygun, Sahra; Shiu, Shin-Han

2017-01-01

Plant transcription factors (TFs) that interact with specific sequences via DNA-binding domains are crucial for regulating transcriptional initiation and are fundamental to plant development and environmental response. In addition, expansion of TF families has allowed functional divergence of duplicate copies, which has contributed to novel, and in some cases adaptive, traits in plants. Thus, TFs are central to the generation of the diverse plant species that we see today. Major plant agronomic traits, including those relevant to domestication, have also frequently arisen through changes in TF coding sequence or expression patterns. Here our goal is to provide an overview of plant TF evolution by first comparing the diversity of DNA-binding domains and the sizes of these domain families in plants and other eukaryotes. Because TFs are among the most highly expanded gene families in plants, the birth and death process of TFs as well as the mechanisms contributing to their retention are discussed. We also provide recent examples of how TFs have contributed to novel traits that are important in plant evolution and in agriculture.This article is part of a Special Issue entitled: Plant Gene Regulatory Mechanisms and Networks, edited by Dr. Erich Grotewold and Dr. Nathan Springer. Copyright © 2016 Elsevier B.V. All rights reserved.

Data from: Root biomass and exudates link plant diversity with soil bacterial and fungal biomass

NARCIS (Netherlands)

Eisenhauer, Nico; Strecker, Tanja; Lanoue, Arnaud; Scheu, Stefan; Steinauer, Katja; Thakur, Madhav P.; Mommer, L.

2017-01-01

Plant diversity has been shown to determine the composition and functioning of soil biota. Although root-derived organic inputs are discussed as the main drivers of soil communities, experimental evidence is scarce. While there is some evidence that higher root biomass at high plant diversity

Vascular plant diversity and community Structure of nandi forests ...

African Journals Online (AJOL)

Abundance data of species was used for species diversity, similarity, species richness estimation and plant community analysis. PC-ORD, CANOCO and EstimateS were used to analyze the data. A total of 321 species ... Keywords: floristic composition, ordination, rarefaction, species accumulation, species richness.

Plant diversity associated with pools in natural and restored peatlands

Directory of Open Access Journals (Sweden)

N. Fontaine

2007-06-01

Full Text Available This study describes plant assemblages associated with the edges of peatland pools. We conducted inventories in six natural peatlands in the province of Québec (Canada in order to measure the contribution of pools to species diversity in climatic regions where peatlands are used for peat extraction. We also carried out vegetation surveys in a peatland that has been restored after peat extraction/harvesting to determine whether pool vegetation establishes along the edges of created pools when dry surface restoration techniques only are used. Pools enhanced plant species richness in natural peatlands. Around created pools, species associated with natural pools were still absent, and non-bog species were present, six years after restoration. On this basis, we emphasise the importance of preserving natural peatlands with pools. In order to restore fully the plant diversity associated with peatlands at harvested sites, it may be necessary to modify pool excavation techniques so that created pools resemble more closely those in natural peatlands. Active introduction of the plant species or communities associated with natural pools may also be needed; candidate species for North America include Andromeda glaucophylla, Cladopodiella fluitans, Carex limosa, Eriophorum virginicum, Rhynchospora alba and Sphagnum cuspidatum.

Genotyping-By-Sequencing for Plant Genetic Diversity Analysis: A Lab Guide for SNP Genotyping

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Gregory W. Peterson

2014-10-01

Full Text Available Genotyping-by-sequencing (GBS has recently emerged as a promising genomic approach for exploring plant genetic diversity on a genome-wide scale. However, many uncertainties and challenges remain in the application of GBS, particularly in non-model species. Here, we present a GBS protocol we developed and use for plant genetic diversity analysis. It uses two restriction enzymes to reduce genome complexity, applies Illumina multiplexing indexes for barcoding and has a custom bioinformatics pipeline for genotyping. This genetic diversity-focused GBS (gd-GBS protocol can serve as an easy-to-follow lab guide to assist a researcher through every step of a GBS application with five main components: sample preparation, library assembly, sequencing, SNP calling and diversity analysis. Specifically, in this presentation, we provide a brief overview of the GBS approach, describe the gd-GBS procedures, illustrate it with an application to analyze genetic diversity in 20 flax (Linum usitatissimum L. accessions and discuss related issues in GBS application. Following these lab bench procedures and using the custom bioinformatics pipeline, one could generate genome-wide SNP genotype data for a conventional genetic diversity analysis of a non-model plant species.

Functional diversity supports the physiological tolerance hypothesis for plant species richness along climatic gradients

Science.gov (United States)

Spasojevic, Marko J.; Grace, James B.; Harrison, Susan; Damschen, Ellen Ingman

2013-01-01

1. The physiological tolerance hypothesis proposes that plant species richness is highest in warm and/or wet climates because a wider range of functional strategies can persist under such conditions. Functional diversity metrics, combined with statistical modeling, offer new ways to test whether diversity-environment relationships are consistent with this hypothesis. 2. In a classic study by R. H. Whittaker (1960), herb species richness declined from mesic (cool, moist, northerly) slopes to xeric (hot, dry, southerly) slopes. Building on this dataset, we measured four plant functional traits (plant height, specific leaf area, leaf water content and foliar C:N) and used them to calculate three functional diversity metrics (functional richness, evenness, and dispersion). We then used a structural equation model to ask if ‘functional diversity’ (modeled as the joint responses of richness, evenness, and dispersion) could explain the observed relationship of topographic climate gradients to species richness. We then repeated our model examining the functional diversity of each of the four traits individually. 3. Consistent with the physiological tolerance hypothesis, we found that functional diversity was higher in more favorable climatic conditions (mesic slopes), and that multivariate functional diversity mediated the relationship of the topographic climate gradient to plant species richness. We found similar patterns for models focusing on individual trait functional diversity of leaf water content and foliar C:N. 4. Synthesis. Our results provide trait-based support for the physiological tolerance hypothesis, suggesting that benign climates support more species because they allow for a wider range of functional strategies.

Plant-associated microbiomes in arid lands: diversity, ecology and biotechnological potential

KAUST Repository

Soussi, Asma; Ferjani, Raoudha; Marasco, Ramona; Guesmi, Amel; Cherif, Hanene; Rolli, Eleonora; Mapelli, Francesca; Ouzari, Hadda Imene; Daffonchio, Daniele; Cherif, Ameur

2015-01-01

Selection and recruitment of the plant associated bacterial assemblages is mediated by the combination of the bio-pedo-agroclimatic conditions and the plant species or varieties. Diversity and functional redundancy of these associated PGPR makes them very active in supporting plant improvement, health and resistance to drought, salt and related stresses. Implementing proper biotechnological applications of the arid and desert-adapted PGPR constitute the challenge to be raised.

[Species, functional, structural diversity of typical plant communities and their responses to environmental factors in Miao Archipelago, China.

Science.gov (United States)

Zheng, Li Ting; Su, Tian; Liu, Xiang Yu; Yin, Fang; Guo, Chao; Tuo, Bin; Yan, En Rong

2018-02-01

Island vegetation plays an important role in biodiversity research across the world. The study of plant diversity in island is helpful for understanding the mechanism of plant diversity maintenance under land-sea interaction. Here, four typical plant communities (Quercus acutissima community, Robinia pseudoacacia community, Pinus thunbergii community and Vitex negundo community) in Miao Archipelago were selected to examine the species, functional and structural diversities and their responses to environmental factors at the community scale by using species diversity indices, functional diversity indices, as well as structural diversity indices. The results showed that the species richness and Rao index of P. thunbergii community was higher than that of Q. acutissima community and R. pseudoacacia community, but the structural diversity was lower. The species diversity and structural diversity of V. Negundo shrub were lower than that of forest community, but the functional diversity was higher than some forest communities. The relationship between the diversity of typical plant communities in island area illustrated a significant positive correlation between species richness with Rao index and tree height diversity, however the correlation with functional evenness was significantly negative. The structural diversity and functional evenness were determined by slope with negative and positive relationships, respectively. Functional heterogeneity, functional divergence and species diversity were affected largely by soil physical and chemical properties, displaying the positive relationship with soil bulk density and soil total carbon content, and a negative relationship with soil water content. In conclusion, diversity pattern of plant community in Miao Archipelago reflected not only the characteristics in mainland vegetation but also the special nature of the sea island.

Genetic diversity and domestication origin of tea plant Camellia taliensis (Theaceae) as revealed by microsatellite markers.

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Zhao, Dong-Wei; Yang, Jun-Bo; Yang, Shi-Xiong; Kato, Kenji; Luo, Jian-Ping

2014-01-09

Tea is one of the most popular beverages in the world. Many species in the Thea section of the Camellia genus can be processed for drinking and have been domesticated. However, few investigations have focused on the genetic consequence of domestication and geographic origin of landraces on tea plants using credible wild and planted populations of a single species. Here, C. taliensis provides us with a unique opportunity to explore these issues. Fourteen nuclear microsatellite loci were employed to determine the genetic diversity and domestication origin of C. taliensis, which were represented by 587 individuals from 25 wild, planted and recently domesticated populations. C. taliensis showed a moderate high level of overall genetic diversity. The greater reduction of genetic diversity and stronger genetic drift were detected in the wild group than in the recently domesticated group, indicating the loss of genetic diversity of wild populations due to overexploitation and habitat fragmentation. Instead of the endangered wild trees, recently domesticated individuals were used to compare with the planted trees for detecting the genetic consequence of domestication. A little and non-significant reduction in genetic diversity was found during domestication. The long life cycle, selection for leaf traits and gene flow between populations will delay the emergence of bottleneck in planted trees. Both phylogenetic and assignment analyses suggested that planted trees may have been domesticated from the adjacent central forest of western Yunnan and dispersed artificially to distant places. This study contributes to the knowledge about levels and distribution of genetic diversity of C. taliensis and provides new insights into genetic consequence of domestication and geographic origin of planted trees of this species. As an endemic tea source plant, wild, planted and recently domesticated C. taliensis trees should all be protected for their unique genetic characteristics, which

β-Diversity of functional groups of woody plants in a tropical dry forest in Yucatan.

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Jorge Omar López-Martínez

Full Text Available Two main theories have attempted to explain variation in plant species composition (β-diversity. Niche theory proposes that most of the variation is related to environment (environmental filtering, whereas neutral theory posits that dispersal limitation is the main driver of β-diversity. In this study, we first explored how α- and β-diversity of plant functional groups defined by growth form (trees, shrubs and lianas, which represent different strategies of resource partitioning, and dispersal syndrome (autochory, anemochory and zoochory, which represent differences in dispersal limitation vary with successional age and topographic position in a tropical dry forest. Second, we examined the effects of environmental, spatial, and spatially-structured environmental factors on β-diversity of functional groups; we used the spatial structure of sampling sites as a proxy for dispersal limitation, and elevation, soil properties and forest stand age as indicators of environmental filtering. We recorded 200 species and 22,245 individuals in 276 plots; 120 species were trees, 41 shrubs and 39 lianas. We found that β-diversity was highest for shrubs, intermediate for lianas and lowest for trees, and was slightly higher for zoochorous than for autochorous and anemochorous species. All three dispersal syndromes, trees and shrubs varied in composition among vegetation classes (successional age and topographic position, whilst lianas did not. β-diversity was influenced mostly by proxies of environmental filtering, except for shrubs, for which the influence of dispersal limitation was more important. Stand age and topography significantly influenced α-diversity across functional groups, but showed a low influence on β-diversity -possibly due to the counterbalancing effect of resprouting on plant distribution and composition. Our results show that considering different plant functional groups reveals important differences in both α- and β-diversity

Environmental Drivers of Patterns of Plant Diversity Along a Wide Environmental Gradient in Korean Temperate Forests

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Chang-Bae Lee

2016-01-01

Full Text Available Understanding patterns of biodiversity and their drivers along environmental gradients is one of the central topics in ecology. However, whether diversity patterns along environmental gradients differ among diversity components as well as life forms and what kind of variables control or interact to shape the diversity patterns are poorly known. This study scrutinized the distribution patterns of three plant groups with four diversity indices and evaluated the effects of regional area, topography, topographic heterogeneity, climate, primary productivity, vegetation structure diversity and vegetation type diversity along an extensive elevational gradient on the Baekdudaegan Mountains in South Korea. Different elevational patterns, including hump-shaped, reversed hump-shaped, increasing, multimodal and no relationship, were observed among both the diversity indices and the plant groups. Regional area, habitat heterogeneity and climate were included to explain most of the elevational diversity patterns. In particular, habitat heterogeneity was the most important variable for explaining the patterns of diversity. The results suggest that patterns of elevational diversity may differ not only among plant groups but also among diversity indices and that such patterns are primarily caused by habitat heterogeneity in the Baekdudaegan Mountains because more heterogeneous and diverse habitats can support more coexisting species.

Ex situ Conservation Effort through the Inventory of Plant Diversity in Mount Seblat, Bengkulu

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Imawan Wahyu Hidayat

2017-12-01

Full Text Available Mount Seblat, as part a of Kerinci Seblat National Park (KSNP, is a pristine and natural mountain, particularly from disturbances and destructions by human activities. Nevertheless, the richness of biological resources especially plant diversity.in this area has not been more explored. The purpose of this study was to conduct an inventory of plant diversity and to determine the plant species composition. The inventory activities were conducted by plants collection along the ascent route. The results were then be maintained through ex situ conservation method in Cibodas Botanical Garden (CBG. The study was conducted by exploratory method, from Seblat Ulu Village (641 m asl up to altitude of 1,037 m asl. There were 18 points of plant sample observation with an area of 5 x 5 square meters per point. Plant collection obtained 380 specimens. Five groups of most collected plants were Lauraceae (18 species, Rubiaceae (8 species, Anacardiaceae (6 species, Annonaceae (5 species, and Fagaceae (4 species. In order to enrich the plants collection as well as conduct the ex situ conservation effort, plants from Orchidaceae were also collected which resulted in 33 species. These results were an important initial inventory of plant diversity of Mount Seblat, considering that there was no record as well as very limited current information. When the environment disturbance tends to increase, this information may act as a reference and an initial database to develop plants conservation effort and strategy in the future.

Species diversity of plant communities from territories with natural origin radionuclides contamination

Energy Technology Data Exchange (ETDEWEB)

Kaneva, A.V.; Belykh, E.S.; Maystrenko, T.A.; Grusdev, B.I.; Zainullin, V.G.; Vakhrusheva, O.M. [Institute of Biology, Komi Scientific Center, Ural Division of RAS, Syktyvkar, 167982 (Russian Federation); Oughton, D. [Norwegian University of Life Sciences, P.O. Box 5003, NO-1432 Aas (Norway)

2014-07-01

Since plants dominate every landscape, the impact of any environmental stressor on plants can directly affect the structure and function of an ecosystem, resulting in decreased primary productivity and degradation of wildlife habitat. The investigation goal of the present research was to study how vascular plant species' composition at a former radium mining site could be related to i) soil contamination with heavy metals and uranium and thorium decay chain radionuclides and ii) soil agrochemical properties. Between the 1930's and 1950's, the commercial extraction of radium, storage of the uranium mill tailings and radium production wastes, together with deactivation of the site with a mixture of sand and gravel completely destroyed plant communities in the vicinity of Vodny settlement (Komi Republic, Russia). The plant cover recovery started more than 60 years ago, and resulted in overgrowing with common grassland plant species. Three meadow sites were investigated, one with low contamination (on the territory of former radium production plant), one with high contamination (waste storage cell) and a reference sites out of the radiochemical plant zone of influence, but with similar natural conditions. Geo-botanical descriptions revealed 134 vascular plant species from 34 families in the meadow communities studied. The greatest richness was seen for Poaceae, Asteraceae, Rosaceae and Fabaceae families; others had 1-5 species. The highest richness in diversity was seen at reference sites with 95 vascular plant species. 87 species were registered on low contaminated sites and 75 species on high contaminated. Perennial herbs were the dominant life form on all the studied meadow communities. Arboreal species expansion in vegetation was noted at both experimental and reference sites. Shannon index calculations indicated a significant (p<0.05) decrease in species diversity on sample areas of the highly contaminated radioactive waste storage cell. Mean values

Seed plant features, distribution patterns, diversity hotspots, and conservation gaps in Xinjiang, China

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Jihong Huang

2018-06-01

Full Text Available The flora in Xinjiang is unique. Decisions about biodiversity conservation and management based on seed plant diversity hotspots and conservation gaps in Xinjiang are essential to maintain this unique flora. Based on a species distribution dataset of seed plants, we measured seed plant diversity using species richness and phylogenetic diversity indices. Five percent of Xinjiang’s total land area with the highest biodiversity was used to identify hotspots for each index. In total, eight hotspots were identified. Most hotspots were located in mountainous areas, mainly in the Tianshan Mountains and Altai Mountains. Furthermore, we detected conservation gaps for Xinjiang’s seed flora hotspots by overlaying nature reserve maps on to maps of identified hotspots and we designated priority conservation gaps for hotspots by overlaying global biodiversity hotspot maps on to hotspot conservation gaps maps. Most of Xinjiang’s seed plant hotspots are poorly protected; only 10.45% of these hotspots were covered by nature reserves. We suggest that it is essential to promote network function of nature reserves within these hotspots in Xinjiang to conserve this unique flora.

Carbon storage potential by four macrophytes as affected by planting diversity in a created wetland.

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Means, Mary M; Ahn, Changwoo; Korol, Alicia R; Williams, Lisa D

2016-01-01

Wetland creation has become a commonplace method for mitigating the loss of natural wetlands. Often mitigation projects fail to restore ecosystem services of the impacted natural wetlands. One of the key ecosystem services of newly created wetlands is carbon accumulation/sequestration, but little is known about how planting diversity (PD) affects the ability of herbaceous wetland plants to store carbon in newly created wetlands. Most mitigation projects involve a planting regime, but PD, which may be critical in establishing biologically diverse and ecologically functioning wetlands, is seldom required. Using a set of 34 mesocosms (∼1 m(2) each), we investigated the effects of planting diversity on carbon storage potential of four native wetland plant species that are commonly planted in created mitigation wetlands in Virginia - Carex vulpinoidea, Eleocharis obtusa, Juncus effusus, and Mimulus ringens. The plants were grown under the four distinctive PD treatments [i.e., monoculture (PD 1) through four different species mixture (PD 4)]. Plant biomass was harvested after two growing seasons and analyzed for tissue carbon content. Competition values (CV) were calculated to understand how the PD treatment affected the competitive ability of plants relative to their biomass production and thus carbon storage potentials. Aboveground biomass ranged from 988 g/m(2) - 1515 g/m(2), being greatest in monocultures, but only when compared to the most diverse mixture (p = 0.021). However, carbon storage potential estimates per mesocosm ranged between 344 g C/m(2) in the most diverse mesocosms (PD 4) to 610 g C/m(2) in monoculture ones with no significant difference (p = 0.089). CV of E. obtusa and C. vulpinoidea showed a declining trend when grown in the most diverse mixtures but J. effusus and M. ringens displayed no difference across the PD gradient (p = 0.910). In monocultures, both M. ringens, and J. effusus appeared to store carbon as biomass more

Commercial Plant Production and Consumption Still Follow the Latitudinal Gradient in Species Diversity despite Economic Globalization.

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Nelson, Erik J; Helmus, Matthew R; Cavender-Bares, Jeannine; Polasky, Stephen; Lasky, Jesse R; Zanne, Amy E; Pearse, William D; Kraft, Nathan J B; Miteva, Daniela A; Fagan, William F

2016-01-01

Increasing trade between countries and gains in income have given consumers around the world access to a richer and more diverse set of commercial plant products (i.e., foods and fibers produced by farmers). According to the economic theory of comparative advantage, countries open to trade will be able to consume more-in terms of volume and diversity-if they concentrate production on commodities that they can most cost-effectively produce, while importing goods that are expensive to produce, relative to other countries. Here, we perform a global analysis of traded commercial plant products and find little evidence that increasing globalization has incentivized agricultural specialization. Instead, a country's plant production and consumption patterns are still largely determined by local evolutionary legacies of plant diversification. Because tropical countries harbor a greater diversity of lineages across the tree of life than temperate countries, tropical countries produce and consume a greater diversity of plant products than do temperate countries. In contrast, the richer and more economically advanced temperate countries have the capacity to produce and consume more plant species than the generally poorer tropical countries, yet this collection of plant species is drawn from fewer branches on the tree of life. Why have countries not increasingly specialized in plant production despite the theoretical financial incentive to do so? Potential explanations include the persistence of domestic agricultural subsidies that distort production decisions, cultural preferences for diverse local food production, and that diverse food production protects rural households in developing countries from food price shocks. Less specialized production patterns will make crop systems more resilient to zonal climatic and social perturbations, but this may come at the expense of global crop production efficiency, an important step in making the transition to a hotter and more

Commercial Plant Production and Consumption Still Follow the Latitudinal Gradient in Species Diversity despite Economic Globalization.

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Erik J Nelson

Full Text Available Increasing trade between countries and gains in income have given consumers around the world access to a richer and more diverse set of commercial plant products (i.e., foods and fibers produced by farmers. According to the economic theory of comparative advantage, countries open to trade will be able to consume more-in terms of volume and diversity-if they concentrate production on commodities that they can most cost-effectively produce, while importing goods that are expensive to produce, relative to other countries. Here, we perform a global analysis of traded commercial plant products and find little evidence that increasing globalization has incentivized agricultural specialization. Instead, a country's plant production and consumption patterns are still largely determined by local evolutionary legacies of plant diversification. Because tropical countries harbor a greater diversity of lineages across the tree of life than temperate countries, tropical countries produce and consume a greater diversity of plant products than do temperate countries. In contrast, the richer and more economically advanced temperate countries have the capacity to produce and consume more plant species than the generally poorer tropical countries, yet this collection of plant species is drawn from fewer branches on the tree of life. Why have countries not increasingly specialized in plant production despite the theoretical financial incentive to do so? Potential explanations include the persistence of domestic agricultural subsidies that distort production decisions, cultural preferences for diverse local food production, and that diverse food production protects rural households in developing countries from food price shocks. Less specialized production patterns will make crop systems more resilient to zonal climatic and social perturbations, but this may come at the expense of global crop production efficiency, an important step in making the transition to a

Criteria of diversity evaluation for intelligent diagnosis of nuclear power plants

International Nuclear Information System (INIS)

Washio, Takashi; Sakuma, Masatake; Furukawa, Hiroshi; Kitamura, Masaharu.

1995-01-01

One of important problems of a current operation support system for a nuclear power plant is that the credibility of its resultant suggestions is not always high sufficiently. The authors have proposed an efficient remedy called 'Diversity Criteria' for this issue in the previous works. It employs a variety of information resources and reasoning mechanisms for the system to enhance its entire credibility. Within this framework, a complementary combination of the resources and mechanisms is desired. The work presented here proposes systematic and quantitative measures determining the appropriate combinations. First, concrete and systematic guidelines are proposed for the detailed criteria of 'Information Diversity' and 'Methodology Diversity'. Next, two concepts of 'Orthogonality of Identified Result' and 'Orthogonality of Utilized Symptom' are presented together with their quantitative measures. These guidelines and measures have been applied to an example of failure diagnosis of a nuclear power plant, and their efficiency has been clearly confirmed. (author)

Medicinal plant diversity and traditional healing practices in eastern Nepal.

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Shrestha, Nawal; Shrestha, Saugat; Koju, Laxmi; Shrestha, Krishna Kumar; Wang, Zhiheng

2016-11-04

The rich floral and ethnic composition of eastern Nepal and the widespread utilization of locally available medicinal plants offer remarkable opportunity for ethnomedicinal research. The present paper aims to explore medicinal plant diversity and use in the remote villages of eastern Nepal. It also aims to evaluate ethnopharmacological significance of the documented use reports and identify species of high indigenous priority. The study was undertaken in four villages located in the Sankhuwasabha district in eastern Nepal. Ethnomedicinal information was collected through structured interviews. The homogeneity of informant's knowledge and the relative importance of documented medicinal plants were validated by informant consensus factor and use value, respectively. Species preference for treatment of particular diseases was evaluated through fidelity level. We reported medicinal properties of 48 species belonging to 33 families and 40 genera, for the treatment of 37 human ailments. The uses of 10 medicinal plants were previously undocumented. The informant consensus factor (F IC ) ranged between 0.38 and 1 with about 50% of values greater than 0.80 and over 75% of values greater than 0.70, indicating moderate to high consensus among the informants on the use of medicinal plants in the region. Swertia chirayita was the most preferred species with significantly high use values, followed by Paris polyphylla and Neopicrorhiza scrophulariiflora. The remote villages in eastern Nepal possess rich floral and cultural diversity with strong consensus among informants on utilization of plants for local healthcare. The direct pharmacological evidence for medicinal properties of most species indicates high reliability of documented information. Careful and systematic screening of compounds isolated from these plants could possibly provide good opportunity for the discovery of novel medicines to treat life-threatening human diseases. We recommend prioritization of medicinal

The microbiome of medicinal plants: diversity and importance for plant growth, quality and health.

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Köberl, Martina; Schmidt, Ruth; Ramadan, Elshahat M; Bauer, Rudolf; Berg, Gabriele

2013-12-20

Past medicinal plant research primarily focused on bioactive phytochemicals, however, the focus is currently shifting due to the recognition that a significant number of phytotherapeutic compounds are actually produced by associated microbes or through interaction with their host. Medicinal plants provide an enormous bioresource of potential use in modern medicine and agriculture, yet their microbiome is largely unknown. The objective of this review is (i) to introduce novel insights into the plant microbiome with a focus on medicinal plants, (ii) to provide details about plant- and microbe-derived ingredients of medicinal plants, and (iii) to discuss possibilities for plant growth promotion and plant protection for commercial cultivation of medicinal plants. In addition, we also present a case study performed both to analyse the microbiome of three medicinal plants (Matricaria chamomilla L., Calendula officinalis L., and Solanum distichum Schumach. and Thonn.) cultivated on organically managed Egyptian desert farm and to develop biological control strategies. The soil microbiome of the desert ecosystem was comprised of a high abundance of Gram-positive bacteria of prime importance for pathogen suppression under arid soil conditions. For all three plants, we observed a clearly plant-specific selection of the microbes as well as highly specific diazotrophic communities that overall identify plant species as important drivers in structural and functional diversity. Lastly, native Bacillus spec. div. strains were able to promote plant growth and elevate the plants' flavonoid production. These results underline the numerous links between the plant-associated microbiome and the plant metabolome.

Profilin-Dependent Nucleation and Assembly of Actin Filaments Controls Cell Elongation in Arabidopsis1[OPEN

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Cao, Lingyan; Blanchoin, Laurent; Staiger, Christopher J.

2016-01-01

Actin filaments in plant cells are incredibly dynamic; they undergo incessant remodeling and assembly or disassembly within seconds. These dynamic events are choreographed by a plethora of actin-binding proteins, but the exact mechanisms are poorly understood. Here, we dissect the contribution of Arabidopsis (Arabidopsis thaliana) PROFILIN1 (PRF1), a conserved actin monomer-binding protein, to actin organization and single filament dynamics during axial cell expansion of living epidermal cells. We found that reduced PRF1 levels enhanced cell and organ growth. Surprisingly, we observed that the overall frequency of nucleation events in prf1 mutants was dramatically decreased and that a subpopulation of actin filaments that assemble at high rates was reduced. To test whether profilin cooperates with plant formin proteins to execute actin nucleation and rapid filament elongation in cells, we used a pharmacological approach. Here, we used Small Molecule Inhibitor of Formin FH2 (SMIFH2), after validating its mode of action on a plant formin in vitro, and observed a reduced nucleation frequency of actin filaments in live cells. Treatment of wild-type epidermal cells with SMIFH2 mimicked the phenotype of prf1 mutants, and the nucleation frequency in prf1-2 mutant was completely insensitive to these treatments. Our data provide compelling evidence that PRF1 coordinates the stochastic dynamic properties of actin filaments by modulating formin-mediated actin nucleation and assembly during plant cell expansion. PMID:26574597

Endophytic Fungal Diversity in Medicinal Plants of Western Ghats, India

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Monnanda Somaiah Nalini

2014-01-01

Full Text Available Endophytes constitute an important component of microbial diversity, and in the present investigation, seven plant species with rich ethnobotanical uses representing six families were analyzed for the presence of endophytic fungi from their natural habitats during monsoon (May/June and winter (November/December seasons of 2007. Fungal endophytes were isolated from healthy plant parts such as stem, root, rhizome, and inflorescence employing standard isolation methods. One thousand five hundred and twenty-nine fungal isolates were obtained from 5200 fragments. Stem fragments harbored more endophytes (80.37% than roots (19.22%. 31 fungal taxa comprised of coelomycetes (65%, hyphomycetes (32%, and ascomycetes (3%. Fusarium, Acremonium, Colletotrichum, Chaetomium, Myrothecium, Phomopsis, and Pestalotiopsis spp. were commonly isolated. Diversity indices differed significantly between the seasons (P<0.001. Species richness was greater for monsoon isolations than winter. Host specificity was observed for few fungal endophytes. UPGMA cluster analysis grouped the endophytes into distinct clusters on the basis of genetic distance. This study is the first report on the diversity and host-specificity of endophytic fungal taxa were from the semi evergreen forest type in Talacauvery subcluster of Western Ghats.

Patterns of genetic diversity in three plant lineages endemic to the Cape Verde Islands.

Science.gov (United States)

Romeiras, Maria M; Monteiro, Filipa; Duarte, M Cristina; Schaefer, Hanno; Carine, Mark

2015-05-15

Conservation of plant diversity on islands relies on a good knowledge of the taxonomy, distribution and genetic diversity of species. In recent decades, a combination of morphology- and DNA-based approaches has become the standard for investigating island plant lineages and this has led, in some cases, to the discovery of previously overlooked diversity, including 'cryptic species'. The flora of the Cape Verde archipelago in the North Atlantic is currently thought to comprise ∼740 vascular plant species, 92 of them endemics. Despite the fact that it is considered relatively well known, there has been a 12 % increase in the number of endemics in the last two decades. Relatively few of the Cape Verde plant lineages have been included in genetic studies so far and little is known about the patterns of diversification in the archipelago. Here we present an updated list for the endemic Cape Verde flora and analyse diversity patterns for three endemic plant lineages (Cynanchum, Globularia and Umbilicus) based on one nuclear (ITS) and four plastid DNA regions. In all three lineages, we find genetic variation. In Cynanchum, we find two distinct haplotypes with no clear geographical pattern, possibly reflecting different ploidy levels. In Globularia and Umbilicus, differentiation is evident between populations from northern and southern islands. Isolation and drift resulting from the small and fragmented distributions, coupled with the significant distances separating the northern and southern islands, could explain this pattern. Overall, our study suggests that the diversity in the endemic vascular flora of Cape Verde is higher than previously thought and further work is necessary to characterize the flora. Published by Oxford University Press on behalf of the Annals of Botany Company.

Plant diversity and conservation status of Himalayan Region Poonch Valley Azad Kashmir (Pakistan).

Science.gov (United States)

Khan, Muhammad Azam; Khan, Mir Ajab; Hussain, Mazhar; Mujtaba, Ghulam

2014-09-01

The plant diversity of Himalayan region has been reduced to greater extent due to environmental degradation and human exploitation. Anthropogenic disturbance was the major factor responsible for fragmentation of forest vegetation into small patches. Little research has been conducted in the Himalayan region of Poonch Valley of North eastern Pakistan with reference to plants biodiversity and its conservation. The present research was carried out to provide a checklist of vegetation for biodiversity conservation. A total of 430 vascular and 5 nonvascular plant species with 5 species of Bryophytes (5 families), 13 species of Pteridophytes (6 families), 4 species of Gymnosperms (1 family) and 413 species of angiosperms (95 families) were enumerated from the Poonch valley Azad Kashmir. The genera were classified into three categories according to the number of species. 25 plant communities with phytosociological parameters and diversity indices were reported. Present study revealed that there were 145 threatened, 30 endangered, 68 vulnerable and 47 rare species. It is recorded that extensive grazing, uprooting of plants and soil slope erosion intensify the environmental problems. Since there is maximum exploitation of vegetation, the valley showed a decline in plant diversity. The study was also indicated that the main threats to the biodiversity are expansion of settlement and army installations in the forest area of the valley. For sustainable use In-situ and Ex-situ conservation, controlled harvesting and afforestation may be the solution. Moreover, forest area should be declared prohibited for settlements and army installations.

The Genetic Diversity of Endophytic and Phyllosphere Bacteria from Several Indonesian Herbal Plants

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Devi Rachelia

2012-04-01

Full Text Available Herbal plants have been believed by Indonesians to be an alternative medicine to treat illnesses. The bioactivecompounds in the plant can be derived from secondary metabolites or from endophytic and phyllosphere bacteria whichcoexist within medicinal plants. A total of 18 endophytic bacteria and 32 phyllosphere bacteria were isolated from theherbal plants of Citrus sp., Pluchea indica, Curcuma longa, Nothopanax scuttelarium, Piper crocatum, andAndrographis paniculata. About 72% of endophytic bacteria isolates have proteolytic activity and about 11% havelipolytic activity. On the other hand, about 59% of phyllosphere bacteria isolates have proteolytic activity and about19% have lipolytic activity. Phylogenetic diversity analysis was conducted by using the amplified ribosomal DNArestriction analysis (ARDRA method and the sequence of 16S rDNA was digested with endonuclease restrictionenzymes: MspI, RsaI, and Sau961. The diversity of endophytic and phyllosphere bacterium from the samples of herbalplants was high. Bacteria isolated from the same herbal plant does not always have a close genetic relationship exceptfor the bacteria isolated from the P. indica plant which showed a close genetic relationship with each other.

Drosophila homologues of adenomatous polyposis coli (APC) and the formin diaphanous collaborate by a conserved mechanism to stimulate actin filament assembly.

Science.gov (United States)

Jaiswal, Richa; Stepanik, Vince; Rankova, Aneliya; Molinar, Olivia; Goode, Bruce L; McCartney, Brooke M

2013-05-10

Vertebrate APC collaborates with Dia through its Basic domain to assemble actin filaments. Despite limited sequence homology between the vertebrate and Drosophila APC Basic domains, Drosophila APC1 collaborates with Dia to stimulate actin assembly in vitro. The mechanism of actin assembly is highly conserved over evolution. APC-Dia collaborations may be crucial in a wide range of animal cells. Adenomatous polyposis coli (APC) is a large multidomain protein that regulates the cytoskeleton. Recently, it was shown that vertebrate APC through its Basic domain directly collaborates with the formin mDia1 to stimulate actin filament assembly in the presence of nucleation barriers. However, it has been unclear whether these activities extend to homologues of APC and Dia in other organisms. Drosophila APC and Dia are each required to promote actin furrow formation in the syncytial embryo, suggesting a potential collaboration in actin assembly, but low sequence homology between the Basic domains of Drosophila and vertebrate APC has left their functional and mechanistic parallels uncertain. To address this question, we purified Drosophila APC1 and Dia and determined their individual and combined effects on actin assembly using both bulk fluorescence assays and total internal reflection fluorescence microscopy. Our data show that APC1, similar to its vertebrate homologue, bound to actin monomers and nucleated and bundled filaments. Further, Drosophila Dia nucleated actin assembly and protected growing filament barbed ends from capping protein. Drosophila APC1 and Dia directly interacted and collaborated to promote actin assembly in the combined presence of profilin and capping protein. Thus, despite limited sequence homology, Drosophila and vertebrate APCs exhibit highly related activities and mechanisms and directly collaborate with formins. These results suggest that APC-Dia interactions in actin assembly are conserved and may underlie important in vivo functions in a broad

The microbiome of medicinal plants: diversity and importance for plant growth, quality and health

Directory of Open Access Journals (Sweden)

Martina eKöberl

2013-12-01

Full Text Available Past medicinal plant research primarily focused on bioactive phytochemicals, however the focus is currently shifting due to the recognition that a significant number of phytotherapeutic compounds are actually produced by associated microbes or through interaction with their host. Medicinal plants provide an enormous bioresource of potential use in modern medicine and agriculture, yet their microbiome is largely unknown. The objective of this review is i to introduce novel insights into the plant microbiome with a focus on medicinal plants, ii to provide details about plant- and microbe-derived ingredients of medicinal plants, and iii to discuss possibilities for plant growth promotion and plant protection for commercial cultivation of medicinal plants. In addition, we also present a case study performed both to analyse the microbiome of three medicinal plants (Matricaria chamomilla L., Calendula officinalis L. and Solanum distichum Schumach. and Thonn. cultivated on organically managed Egyptian desert farm and to develop biological control strategies. The soil microbiome of the desert ecosystem was comprised of a high abundance of Gram-positive bacteria of prime importance for pathogen suppression under arid soil conditions. For all three plants, we observed a clearly plant-specific selection of the microbes as well as highly specific diazotrophic communities that overall identify plant species as important drivers in structural and functional diversity. Lastly, native Bacillus spec. div. strains were able to promote plant growth and elevate the plants’ flavonoid production. These results underline the numerous links between the plant-associated microbiome and the plant metabolome.

Cenozoic plant diversity of Yunnan: A review

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Yongjiang Huang

2016-12-01

Full Text Available Yunnan in southwestern China is renowned for its high plant diversity. To understand how this modern botanical richness formed, it is critical to investigate the past biodiversity throughout the geological time. In this review, we present a summary on plant diversity, floristics and climates in the Cenozoic of Yunnan and document their changes, by compiling published palaeobotanical sources. Our review demonstrates that thus far a total of 386 fossil species of ferns, gymnosperms and angiosperms belonging to 170 genera within 66 families have been reported from the Cenozoic, particularly the Neogene, of Yunnan. Angiosperms display the highest richness represented by 353 species grouped into 155 genera within 60 families, with Fagaceae, Fabaceae, Lauraceae and Juglandaceae being the most diversified. Most of the families and genera recorded as fossils still occur in Yunnan, but seven genera have disappeared, including Berryophyllum, Cedrelospermum, Cedrus, Palaeocarya, Podocarpium, Sequoia and Wataria. The regional extinction of these genera is commonly referred to an aridification of the dry season associated with Asian monsoon development. Floristic analyses indicate that in the late Miocene, Yunnan had three floristic regions: a northern subtropical floristic region in the northeast, a subtropical floristic region in the east, and a tropical floristic region in the southwest. In the late Pliocene, Yunnan saw two kinds of floristic regions: a subalpine floristic region in the northwest, and two subtropical floristic regions separately in the southwest and the eastern center. These floristic concepts are verified by results from our areal type analyses which suggest that in the Miocene southwestern Yunnan supported the most Pantropic elements, while in the Pliocene southwestern Yunnan had abundant Tropical Asia (Indo–Malaysia type and East Asia and North America disjunct type that were absent from northwestern Yunnan. From the late Miocene to

Nectar-living yeasts of a tropical host plant community: diversity and effects on community-wide floral nectar traits

Science.gov (United States)

2017-01-01

We characterize the diversity of nectar-living yeasts of a tropical host plant community at different hierarchical sampling levels, measure the associations between yeasts and nectariferous plants, and measure the effect of yeasts on nectar traits. Using a series of hierarchically nested sampling units, we extracted nectar from an assemblage of host plants that were representative of the diversity of life forms, flower shapes, and pollinator types in the tropical area of Yucatan, Mexico. Yeasts were isolated from single nectar samples; their DNA was identified, the yeast cell density was estimated, and the sugar composition and concentration of nectar were quantified using HPLC. In contrast to previous studies from temperate regions, the diversity of nectar-living yeasts in the plant community was characterized by a relatively high number of equally common species with low dominance. Analyses predict highly diverse nectar yeast communities in a relatively narrow range of tropical vegetation, suggesting that the diversity of yeasts will increase as the number of sampling units increases at the level of the species, genera, and botanical families of the hosts. Significant associations between specific yeast species and host plants were also detected; the interaction between yeasts and host plants impacted the effect of yeast cell density on nectar sugars. This study provides an overall picture of the diversity of nectar-living yeasts in tropical host plants and suggests that the key factor that affects the community-wide patterns of nectar traits is not nectar chemistry, but rather the type of yeasts interacting with host plants. PMID:28717591

Nectar-living yeasts of a tropical host plant community: diversity and effects on community-wide floral nectar traits

Directory of Open Access Journals (Sweden)

Azucena Canto

2017-07-01

Full Text Available We characterize the diversity of nectar-living yeasts of a tropical host plant community at different hierarchical sampling levels, measure the associations between yeasts and nectariferous plants, and measure the effect of yeasts on nectar traits. Using a series of hierarchically nested sampling units, we extracted nectar from an assemblage of host plants that were representative of the diversity of life forms, flower shapes, and pollinator types in the tropical area of Yucatan, Mexico. Yeasts were isolated from single nectar samples; their DNA was identified, the yeast cell density was estimated, and the sugar composition and concentration of nectar were quantified using HPLC. In contrast to previous studies from temperate regions, the diversity of nectar-living yeasts in the plant community was characterized by a relatively high number of equally common species with low dominance. Analyses predict highly diverse nectar yeast communities in a relatively narrow range of tropical vegetation, suggesting that the diversity of yeasts will increase as the number of sampling units increases at the level of the species, genera, and botanical families of the hosts. Significant associations between specific yeast species and host plants were also detected; the interaction between yeasts and host plants impacted the effect of yeast cell density on nectar sugars. This study provides an overall picture of the diversity of nectar-living yeasts in tropical host plants and suggests that the key factor that affects the community-wide patterns of nectar traits is not nectar chemistry, but rather the type of yeasts interacting with host plants.

Commercial Plant Production and Consumption Still Follow the Latitudinal Gradient in Species Diversity despite Economic Globalization

Science.gov (United States)

Nelson, Erik J.; Helmus, Matthew R.; Cavender-Bares, Jeannine; Polasky, Stephen; Lasky, Jesse R.; Zanne, Amy E.; Pearse, William D.; Kraft, Nathan J. B.; Miteva, Daniela A.; Fagan, William F.

2016-01-01

Increasing trade between countries and gains in income have given consumers around the world access to a richer and more diverse set of commercial plant products (i.e., foods and fibers produced by farmers). According to the economic theory of comparative advantage, countries open to trade will be able to consume more–in terms of volume and diversity–if they concentrate production on commodities that they can most cost-effectively produce, while importing goods that are expensive to produce, relative to other countries. Here, we perform a global analysis of traded commercial plant products and find little evidence that increasing globalization has incentivized agricultural specialization. Instead, a country’s plant production and consumption patterns are still largely determined by local evolutionary legacies of plant diversification. Because tropical countries harbor a greater diversity of lineages across the tree of life than temperate countries, tropical countries produce and consume a greater diversity of plant products than do temperate countries. In contrast, the richer and more economically advanced temperate countries have the capacity to produce and consume more plant species than the generally poorer tropical countries, yet this collection of plant species is drawn from fewer branches on the tree of life. Why have countries not increasingly specialized in plant production despite the theoretical financial incentive to do so? Potential explanations include the persistence of domestic agricultural subsidies that distort production decisions, cultural preferences for diverse local food production, and that diverse food production protects rural households in developing countries from food price shocks. Less specialized production patterns will make crop systems more resilient to zonal climatic and social perturbations, but this may come at the expense of global crop production efficiency, an important step in making the transition to a hotter and more

[Species diversity of ex-situ cultivated Chinese medicinal plants].

Science.gov (United States)

Que, Ling; Chi, Xiu-Lian; Zang, Chun-Xin; Zhang, Yu; Chen, Min; Yang, Guang; Jin, An-Qi

2018-03-01

Ex-situ conservation is an important means to protect biological genetic resources. Resource protection has received more and more attention with the continuous improvement of the comprehensive utilization of traditional Chinese medicine resources. In this paper, the research and compilation of the species list of ex-situ cultivated medicinal plants in 12 Chinese Academy of Sciences botanic gardens and 19 specialized medicinal botanic gardens in China were carried out. Based on the Species 2000(2017) and other classification databases, species diversity of medicinal plants ex-situ cultivated in these botanical gardens were analyzed. The study found that there were 16 351 higher plant species in our country, belonging to 276 families and 1 936 genera. Of these, 6 949 specieswere medicinal plants, accounting for 50.4% of the total medicinal plants. There were 1 280 medicinal plants were in threatened status, accounting for 19.6% of all threatened species in the Chinese Biodiversity Red List, with ex-situ cultivated proportion of 59.5%. And 3 988 medicinal plants were Chinese endemic species, accounting for 22.5% of all Chinese endemic species, with ex-situ cultivated proportion of 53.3%. This article has reference significance for the management and protection of medicinal plant resources. Copyright© by the Chinese Pharmaceutical Association.

Soil fertility and plant diversity enhance microbial performance in metal-polluted soils.

Science.gov (United States)

Stefanowicz, Anna M; Kapusta, Paweł; Szarek-Łukaszewska, Grażyna; Grodzińska, Krystyna; Niklińska, Maria; Vogt, Rolf D

2012-11-15

This study examined the effects of soil physicochemical properties (including heavy metal pollution) and vegetation parameters on soil basal respiration, microbial biomass, and the activity and functional richness of culturable soil bacteria and fungi. In a zinc and lead mining area (S Poland), 49 sites were selected to represent all common plant communities and comprise the area's diverse soil types. Numerous variables describing habitat properties were reduced by PCA to 7 independent factors, mainly representing subsoil type (metal-rich mining waste vs. sand), soil fertility (exchangeable Ca, Mg and K, total C and N, organic C), plant species richness, phosphorus content, water-soluble heavy metals (Zn, Cd and Pb), clay content and plant functional diversity (based on graminoids, legumes and non-leguminous forbs). Multiple regression analysis including these factors explained much of the variation in most microbial parameters; in the case of microbial respiration and biomass, it was 86% and 71%, respectively. The activity of soil microbes was positively affected mainly by soil fertility and, apparently, by the presence of mining waste in the subsoil. The mining waste contained vast amounts of trace metals (total Zn, Cd and Pb), but it promoted microbial performance due to its inherently high content of macronutrients (total Ca, Mg, K and C). Plant species richness had a relatively strong positive effect on all microbial parameters, except for the fungal component. In contrast, plant functional diversity was practically negligible in its effect on microbes. Other explanatory variables had only a minor positive effect (clay content) or no significant influence (phosphorus content) on microbial communities. The main conclusion from this study is that high nutrient availability and plant species richness positively affected the soil microbes and that this apparently counteracted the toxic effects of metal contamination. Copyright © 2012 Elsevier B.V. All rights

Past climate-driven range shifts and population genetic diversity in arctic plants

DEFF Research Database (Denmark)

Pellissier, Loïc; Eidesen, Pernille Bronken; Ehrich, Dorothee

2016-01-01

High intra-specific genetic diversity is necessary for species adaptation to novel environments under climate change, but species tracking suitable conditions are losing alleles through successive founder events during range shift. Here, we investigated the relationship between range shift since ...... the Last Glacial Maximum (LGM) and extant population genetic diversity across multiple plant species to understand variability in species responses...

Species turnover drives β-diversity patterns across multiple spatial scales of plant-galling interactions in mountaintop grasslands.

Science.gov (United States)

Coelho, Marcel Serra; Carneiro, Marco Antônio Alves; Branco, Cristina Alves; Borges, Rafael Augusto Xavier; Fernandes, Geraldo Wilson

2018-01-01

This study describes differences in species richness and composition of the assemblages of galling insects and their host plants at different spatial scales. Sampling was conducted along altitudinal gradients composed of campos rupestres and campos de altitude of two mountain complexes in southeastern Brazil: Espinhaço Range and Mantiqueira Range. The following hypotheses were tested: i) local and regional richness of host plants and galling insects are positively correlated; ii) beta diversity is the most important component of regional diversity of host plants and galling insects; and iii) Turnover is the main mechanism driving beta diversity of both host plants and galling insects. Local richness of galling insects and host plants increased with increasing regional richness of species, suggesting a pattern of unsaturated communities. The additive partition of regional richness (γ) into local and beta components shows that local richnesses (α) of species of galling insects and host plants are low relative to regional richness; the beta (β) component incorporates most of the regional richness. The multi-scale analysis of additive partitioning showed similar patterns for galling insects and host plants with the local component (α) incorporated a small part of regional richness. Beta diversity of galling insects and host plants were mainly the result of turnover, with little contribution from nesting. Although the species composition of galling insects and host plant species varied among sample sites, mountains and even mountain ranges, local richness remained relatively low. In this way, the addition of local habitats with different landscapes substantially affects regional richness. Each mountain contributes fundamentally to the composition of regional diversity of galling insects and host plants, and so the design of future conservation strategies should incorporate multiple scales.

Organic, integrated and conventional management in apple orchards: effect on plant species composition, richness and diversity

Directory of Open Access Journals (Sweden)

Zdeňka Lososová

2011-01-01

Full Text Available The study was conducted to assess the effect of conventional, integrated and organic management on differences in plant species composition, richness and diversity. The plants were studied in triads of orchards situated in three regions of the Czech Republic. Data about species occurrences were collected on 15 permanent plots in the tree rows and 15 plots between tree rows in each of the apple orchards during 2009. A total of 201 vascular plant species (127 native species, 65 archaeophytes, and 9 neophytes were found. Management type and also different regional conditions had a significant effect on plant species composition and on diversity parameters of orchard spontaneous vegetation. Species richness and species pool was significantly higher in the organic orchards than in the differently managed orchards. Management type had significant effect on proportions of archaeophytes, and also neophytes in apple orchards. The results showed that a change from conventional to integrated and organic management in apple orchards lead to higher plant species diversity and to changes in plant species composition.

Regulation of the formin Cappuccino is critical for polarity of Drosophila oocytes

Science.gov (United States)

Bor, Batbileg; Bois, Justin S.; Quinlan, Margot E.

2014-01-01

The Drosophila formin Cappuccino (Capu) creates an actin mesh-like structure that traverses the oocyte during mid-oogenesis. This mesh is thought to prevent premature onset of fast cytoplasmic streaming which normally happens during late-oogenesis. Proper cytoskeletal organization and cytoplasmic streaming are crucial for localization of polarity determinants such as osk, grk, bcd and nanos mRNAs. Capu mutants disrupt these events, leading to female sterility. Capu is regulated by another nucleator, Spire, as well as by autoinhibition in vitro. Studies in vivo confirm that Spire modulates Capu’s function in oocytes; however, how autoinhibition contributes is still unclear. To study the role of autoinhibition in flies, we expressed a Capu construct that is missing the Capu Inhibitory Domain, CapuΔN. Consistent with a gain of activity due to loss of autoinhibition, the actin mesh was denser in CapuΔN oocytes. Further, cytoplasmic streaming was delayed and fertility levels decreased. Localization of osk mRNA in early stages, and bcd and nanos in late stages, were disrupted in CapuΔN-expressing oocytes. Finally, evidence that these phenotypes were due to a loss of autoinhibition comes from co-expression of the N-terminal half of Capu with CapuΔN, which suppressed the defects in actin, cytoplasmic streaming and fertility. From these results, we conclude that Capu can be autoinhibited during Drosophila oocyte development. PMID:25557988

Climate vs. topography – spatial patterns of plant species diversity and endemism on a high-elevation island

DEFF Research Database (Denmark)

Irl, Severin David Howard; Harter, David E. V.; Steinbauer, Manuel

2015-01-01

the independent contribution of climatic and topographic variables to spatial diversity patterns. We constructed a presence/absence matrix of perennial endemic and native vascular plant species (including subspecies) in 890 plots on the environmentally very heterogeneous island of La Palma, Canary Islands......Climate and topography are among the most fundamental drivers of plant diversity. Here, we assessed the importance of climate and topography in explaining diversity patterns of species richness, endemic richness and endemicity on the landscape scale of an oceanic island and evaluated...... to ecological speciation and specialization to local conditions. We highlight the importance of incorporating climatic variability into future studies of plant species diversity and endemism. The spatial incongruence in hot spots of species richness, endemic richness and endemicity emphasizes the need...

Plant species identity and diversity effects on different trophic levels of nematodes in the soil food web

NARCIS (Netherlands)

De Deyn, G.B.; Raaijmakers, C.E.; Van Ruijven, J.; Berendse, F.; Van der Putten, W.H.

2004-01-01

Previous studies on biodiversity and soil food web composition have mentioned plant species identity, as well as plant species diversity as the main factors affecting the abundance and diversity of soil organisms. However, most studies have been carried out under limitations of time, space, or

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes

Energy Technology Data Exchange (ETDEWEB)

Ohm, Robin A.; Feau, Nicolas; Henrissat, Bernard; Schoch, Conrad L.; Horwitz, Benjamin A.; Barry, Kerrie W.; Condon, Bradford J.; Copeland, Alex C.; Dhillon, Braham; Glaser, Fabian; Hesse, Cedar N.; Kosti, Idit; LaButti, Kurt; Lindquist, Erika A.; Lucas, Susan; Salamov, Asaf A.; Bradshaw, Rosie E.; Ciuffetti, Lynda; Hamelin, Richard C.; Kema, Gert H. J.; Lawrence, Christopher; Scott, James A.; Spatafora, Joseph W.; Turgeon, B. Gillian; de Wit, Pierre J. G. M.; Zhong, Shaobin; Goodwin, Stephen B.; Grigoriev, Igor V.

2013-03-05

The class of Dothideomycetes is one of the largest and most diverse groups of fungi. Many are plant pathogens and pose a serious threat to agricultural crops that are grown for biofuel, food or feed. Most Dothideomycetes have only a single host plant, and related species can have very diverse hosts. Eighteen genomes of Dothideomycetes have currently been sequenced by the Joint Genome Institute and other sequencing centers. Here we describe the results of comparative analyses of the fungi in this group.

The potential of plant viruses to promote genotypic diversity via genotype x environment interactions

DEFF Research Database (Denmark)

van Mölken, Tamara; Stuefer, Josef F.

2011-01-01

† Background and Aims Genotype by environment (G × E) interactions are important for the long-term persistence of plant species in heterogeneous environments. It has often been suggested that disease is a key factor for the maintenance of genotypic diversity in plant populations. However, empirical...... and the G × E interactions were examined with respect to genotypespecific plant responses to WClMV infection. Thus, the environment is defined as the presence or absence of the virus. † Key Results WClMV had a negative effect on plant performance as shown by a decrease in biomass and number of ramets...... evidence for this contention is scarce. Here virus infection is proposed as a possible candidate for maintaining genotypic diversity in their host plants. † Methods The effects of White clover mosaic virus (WClMV) on the performance and development of different Trifolium repens genotypes were analysed...

Diversity and Biological Activities of Endophytic Fungi Associated with Micropropagated Medicinal Plant Echinacea purpurea (L.) Moench

Science.gov (United States)

2012-08-01

1105 Diversity and Biological Activities of Endophytic Fungi Associated with Micropropagated Medicinal Plant Echinacea purpurea (L.) Moench Luiz H...fungal community and micropropagated clones of E. purpurea was re-established after acclimatization to soil and the endophytic fungi produced compounds...Diversity and Biological Activities of Endophytic Fungi Associated with Micropropagated Medicinal Plant Echinacea purpurea (L.) Moench 5a. CONTRACT

Impacts of weather on long-term patterns of plant richness and diversity vary with location and management.

Science.gov (United States)

Jonas, Jayne L; Buhl, Deborah A; Symstad, Amy J

2015-09-01

Better understanding the influence of precipitation and temperature on plant assemblages is needed to predict the effects of climate change. Many studies have examined the relationship between plant productivity and weather (primarily precipitation), but few have directly assessed the relationship between plant richness or diversity and weather despite their increased use as metrics of ecosystem condition. We focus on the grasslands of central North America, which are characterized by high temporal climatic variability. Over the next 100 years, these grasslands are predicted to experience further increased variability in growing season precipitation, as well as increased temperatures, due to global climate change. We assess the portion of interannual variability of richness and diversity explained by weather, how relationships between these metrics and weather vary among plant assemblages, and which aspects of weather best explain temporal variability. We used an information-theoretic approach to assess relationships between long-term plant richness and diversity patterns and a priori weather covariates using six data sets from four grasslands. Weather explained up to 49% and 63% of interannual variability in total plant species richness and diversity, respectively. However, richness and diversity responses to specific weather variables varied both among sites and among experimental treatments within sites. In general, we found many instances in which temperature was of equal or greater importance as precipitation, as well as evidence of the importance of lagged effects and precipitation or temperature variability. Although precipitation has been shown to be a key driver of productivity in grasslands, our results indicate that increasing temperatures alone, without substantial changes in precipitation patterns, could have measurable effects on Great Plains grassland plant assemblages and biodiversity metrics. Our results also suggest that richness and diversity

Plant diversity moderates drought stress in grasslands: Implications from a large real-world study on {sup 13}C natural abundances

Energy Technology Data Exchange (ETDEWEB)

Klaus, Valentin H., E-mail: v.klaus@uni-muenster.de [Münster University, Institute for Landscape Ecology, Heisenbergstr. 2, 48149 Münster (Germany); Hölzel, Norbert [Münster University, Institute for Landscape Ecology, Heisenbergstr. 2, 48149 Münster (Germany); Prati, Daniel; Schmitt, Barbara [University of Bern, Institute of Plant Sciences, Altenbergrain 21, 3013 Bern (Switzerland); Schöning, Ingo; Schrumpf, Marion; Solly, Emily F. [Max-Planck-Institute for Biogeochemistry, Hans-Knöll-Str. 10, 07745 Jena (Germany); Hänsel, Falk [University Marburg, Environmental Informatics, Faculty of Geography, Deutschhausstr. 12, 35037 Marburg (Germany); Fischer, Markus [University of Bern, Institute of Plant Sciences, Altenbergrain 21, 3013 Bern (Switzerland); Kleinebecker, Till [Münster University, Institute for Landscape Ecology, Heisenbergstr. 2, 48149 Münster (Germany)

2016-10-01

Land-use change and intensification play a key role in the current biodiversity crisis. The resulting species loss can have severe effects on ecosystem functions and services, thereby increasing ecosystem vulnerability to climate change. We explored whether land-use intensification (i.e. fertilization intensity), plant diversity and other potentially confounding environmental factors may be significantly related to water use (i.e. drought stress) of grassland plants. Drought stress was assessed using δ{sup 13}C abundances in aboveground plant biomass of 150 grassland plots across a gradient of land-use intensity. Under water shortage, plants are forced to increasingly take up the heavier {sup 13}C due to closing stomata leading to an enrichment of {sup 13}C in biomass. Plants were sampled at the community level and for single species, which belong to three different functional groups (one grass, one herb, two legumes). Results show that plant diversity was significantly related to the δ{sup 13}C signal in community, grass and legume biomass indicating that drought stress was lower under higher diversity, although this relation was not significant for the herb species under study. Fertilization, in turn, mostly increased drought stress as indicated by more positive δ{sup 13}C values. This effect was mostly indirect by decreasing plant diversity. In line with these results, we found similar patterns in the δ{sup 13}C signal of the organic matter in the topsoil, indicating a long history of these processes. Our study provided strong indication for a positive biodiversity-ecosystem functioning relationship with reduced drought stress at higher plant diversity. However, it also underlined a negative reinforcing situation: as land-use intensification decreases plant diversity in grasslands, this might subsequently increases drought sensitivity. Vice-versa, enhancing plant diversity in species-poor agricultural grasslands may moderate negative effects of future

Plant diversity moderates drought stress in grasslands: Implications from a large real-world study on "1"3C natural abundances

International Nuclear Information System (INIS)

Klaus, Valentin H.; Hölzel, Norbert; Prati, Daniel; Schmitt, Barbara; Schöning, Ingo; Schrumpf, Marion; Solly, Emily F.; Hänsel, Falk; Fischer, Markus; Kleinebecker, Till

2016-01-01

Land-use change and intensification play a key role in the current biodiversity crisis. The resulting species loss can have severe effects on ecosystem functions and services, thereby increasing ecosystem vulnerability to climate change. We explored whether land-use intensification (i.e. fertilization intensity), plant diversity and other potentially confounding environmental factors may be significantly related to water use (i.e. drought stress) of grassland plants. Drought stress was assessed using δ"1"3C abundances in aboveground plant biomass of 150 grassland plots across a gradient of land-use intensity. Under water shortage, plants are forced to increasingly take up the heavier "1"3C due to closing stomata leading to an enrichment of "1"3C in biomass. Plants were sampled at the community level and for single species, which belong to three different functional groups (one grass, one herb, two legumes). Results show that plant diversity was significantly related to the δ"1"3C signal in community, grass and legume biomass indicating that drought stress was lower under higher diversity, although this relation was not significant for the herb species under study. Fertilization, in turn, mostly increased drought stress as indicated by more positive δ"1"3C values. This effect was mostly indirect by decreasing plant diversity. In line with these results, we found similar patterns in the δ"1"3C signal of the organic matter in the topsoil, indicating a long history of these processes. Our study provided strong indication for a positive biodiversity-ecosystem functioning relationship with reduced drought stress at higher plant diversity. However, it also underlined a negative reinforcing situation: as land-use intensification decreases plant diversity in grasslands, this might subsequently increases drought sensitivity. Vice-versa, enhancing plant diversity in species-poor agricultural grasslands may moderate negative effects of future climate change. - Highlights

Soil stability and plant diversity in eco-engineering

Science.gov (United States)

Böll, Albert; Gerber, Werner; Rickli, Christian; Graf, Frank

2010-05-01

Slopes affected by superficial sliding and subsequently re-stabilised with eco-engineering measures were investigated, particularly related to soil stability and plant diversity. The sites are situated in three different areas of beech-fir-spruce forest associations of the higher montane zone of Switzerland. Climatic and site characteristics, in paraticular soil properties after the sliding event, of the three investigation areas are very similar. However, the number of species (shrubs and trees) used for the initial planting as well as the year of application of the eco-engineering measures differ substantially. In the investigation area Dallenwil-Wirzweli the biological measures taken in 1981 were restricted to one tree species, namely White Alder (Alnus incana). In Klosters, where measures were taken in 1983 as well as in the Arieschbach valley, where eco-engineering was applied in 1998, the initial planting consisted of 15 species either. Investigations in 2005/2006 revealed neither obvious differences among the three areas nor distinct correlations related to the diversity of the initial planting on the on hand and the development of the vegetation cover and soil stability on the other hand. During the available time of development, the soil aggregate stability increased by 30 to 39%. Compared to the corresponding climax association, the relative values of soil aggregate stability varied between 90 and 120%. Concurrently, the dry unit weight decreased between 1.1 and 3.1 kN/m3. The cumulative vegetation cover varied from 110 to 150%. Due to processes of soil development a distinct shift in the grain size distribution was noticed, from a well sorted gravel with clay and sand (GW-GC) to a silty gravel with sand (GM) in Dallenwil-Wirzweli and a silty to clayey gravel with sand (GC-GM) in Klosters and the Arieschbach valley. Furthermore, in all three investigation areas succession processes were observed that are comparable to average rates of natural secondary

The relative role of dispersal and local interactions for alpine plant community diversity under simulated climate warming

Energy Technology Data Exchange (ETDEWEB)

Klanderud, K.; Totland, Oe. [Norwegian Univ. of Life Science, Dept. of Ecology and Natural Resource Management, Aas (Norway)

2007-08-15

Most studies on factors determining diversity are conducted in temperate or warm regions, whereas studies in climatically harsh and low productivity areas, such as alpine regions, are rare. We examined the relative roles of seed availability and different biotic and abiotic factors for the diversity of an alpine plant community in southern Norway. Furthermore, because climate warming is predicted to be an important driver of alpine species diversity, we assessed how the relative impacts of dispersal and local interactions on diversity might change under experimental warming (open top chambers, OTCs). Addition of seeds from 27 regional species increased community diversity. The establishment of the species was negatively related both to the diversity of the existing system and the cover of the abundant dwarf shrub Dryas octopetala. These results show that both species dispersal limitation and local biotic interactions are important factors for alpine plant community diversity. Despite relatively harsh environmental conditions and low productivity, competition from the resident vegetation appeared to have a greater role for species establishment and diversity than facilitation and experimental warming. Higher temperature appeared to increase the negative relationship between resident species diversity and species establishment. This may suggest that climate warming can increase the role of interspecific competition for alpine plant community structure, and thus alter the long-term effects of biotic interactions on diversity. (au)

Diversity of Medicinal Plants among Different Forest-use Types of the Pakistani Himalaya.

Science.gov (United States)

Adnan, Muhammad; Hölscher, Dirk

2012-12-01

Diversity of Medicinal Plants among Different Forest-use Types of the Pakistani Himalaya Medicinal plants collected in Himalayan forests play a vital role in the livelihoods of regional rural societies and are also increasingly recognized at the international level. However, these forests are being heavily transformed by logging. Here we ask how forest transformation influences the diversity and composition of medicinal plants in northwestern Pakistan, where we studied old-growth forests, forests degraded by logging, and regrowth forests. First, an approximate map indicating these forest types was established and then 15 study plots per forest type were randomly selected. We found a total of 59 medicinal plant species consisting of herbs and ferns, most of which occurred in the old-growth forest. Species number was lowest in forest degraded by logging and intermediate in regrowth forest. The most valuable economic species, including six Himalayan endemics, occurred almost exclusively in old-growth forest. Species composition and abundance of forest degraded by logging differed markedly from that of old-growth forest, while regrowth forest was more similar to old-growth forest. The density of medicinal plants positively correlated with tree canopy cover in old-growth forest and negatively in degraded forest, which indicates that species adapted to open conditions dominate in logged forest. Thus, old-growth forests are important as refuge for vulnerable endemics. Forest degraded by logging has the lowest diversity of relatively common medicinal plants. Forest regrowth may foster the reappearance of certain medicinal species valuable to local livelihoods and as such promote acceptance of forest expansion and medicinal plants conservation in the region. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s12231-012-9213-4) contains supplementary material, which is available to authorized users.

effect of bush burning on herbaceous plant diversity in lagos state

African Journals Online (AJOL)

conducted to assess the effect of bush burning on plant species diversity. Three frequently burnt ... also believed to rid the grassland of parasitic insects and to prevent the encroachment of ..... The effect of smoke inhalation on lung function and ...

DNA from soil mirrors plant taxonomic and growth form diversity

Czech Academy of Sciences Publication Activity Database

Yoccoz, N. G.; Brathen, K. A.; Gielly, L.; Haile, J.; Edwards, M. E.; Goslar, T.; von Stedingk, H.; Brysting, A.; Coissac, E.; Pompanon, F.; Sonstebo, J. H.; Miquel, C.; Valentini, A.; de Bello, Francesco; Chave, J.; Thuiller, W.; Wincker, P.; Cruaud, C.; Gavory, F.; Rasmussen, M.; Gilbert, M. T. P.; Orlando, L.; Brochmann, C.; Willerslev, E.; Taberlet, P.

2012-01-01

Roč. 21, č. 15 (2012), s. 3647-3655 ISSN 0962-1083 R&D Projects: GA ČR GAP505/12/1296 Institutional research plan: CEZ:AV0Z60050516 Institutional support: RVO:67985939 Keywords : biodiversity assessment * environmental sequencing * plant diversity * DNA Subject RIV: EH - Ecology, Behaviour Impact factor: 6.275, year: 2012

Diversity and incidence of plant-parasitic nematodes in Belgian turf grass

NARCIS (Netherlands)

Vandenbossche, B.; Viaene, N.; Sutter, de N.; Maes, M.; Karssen, G.; Bert, W.

2011-01-01

Eleven golf courses and eight football pitches, located in Belgium, were surveyed for plant-parasitic nematodes. This revealed a remarkably high diversity: 52 different species/taxa were identified morphologically, belonging to 23 genera and nine families. Among the most prevalent nematodes on both

Reduced representation approaches to interrogate genome diversity in large repetitive plant genomes.

Science.gov (United States)

Hirsch, Cory D; Evans, Joseph; Buell, C Robin; Hirsch, Candice N

2014-07-01

Technology and software improvements in the last decade now provide methodologies to access the genome sequence of not only a single accession, but also multiple accessions of plant species. This provides a means to interrogate species diversity at the genome level. Ample diversity among accessions in a collection of species can be found, including single-nucleotide polymorphisms, insertions and deletions, copy number variation and presence/absence variation. For species with small, non-repetitive rich genomes, re-sequencing of query accessions is robust, highly informative, and economically feasible. However, for species with moderate to large sized repetitive-rich genomes, technical and economic barriers prevent en masse genome re-sequencing of accessions. Multiple approaches to access a focused subset of loci in species with larger genomes have been developed, including reduced representation sequencing, exome capture and transcriptome sequencing. Collectively, these approaches have enabled interrogation of diversity on a genome scale for large plant genomes, including crop species important to worldwide food security. © The Author 2014. Published by Oxford University Press. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Diversity distribution patterns of Chinese endemic seed plant species and their implications for conservation planning

Science.gov (United States)

Huang, Jihong; Huang, Jianhua; Lu, Xinghui; Ma, Keping

2016-01-01

Endemism is an important concept in biogeography and biodiversity conservation. China is one of the richest countries in biodiversity, with very high levels of plant endemism. In this study, we analysed the distribution patterns of diversity, the degree of differentiation, and the endemicity of Chinese endemic seed plants using the floristic unit as a basic spatial analysis unit and 11 indices. The analysis was based on distribution data of 24,951 native seed plant species (excluding subspecies and varieties) and 12,980 Chinese endemic seed plant species, which were sourced from both specimen records and published references. The distribution patterns of Chinese endemic flora were generally consistent but disproportionate across China for diversity, degree of differentiation and endemicity. The South Hengduan Mountains Subregion had the highest values for all indices. At the regional level, both the Hengduan Mountains and the Central China regions were highest in diversity and degrees of differentiation. However, both the rate of local endemic to native species and the rate of local to Chinese endemic species were highest in the Taiwan Region and the South Taiwan Region. The Hengduan Mountains Region and the Central China Region are two key conservation priority areas for Chinese endemic seed plants. PMID:27658845

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Doethideomycetes Fungi

Energy Technology Data Exchange (ETDEWEB)

Ohm, Robin A.; Feau, Nicolas; Henrissat, Bernard; Schoch, Conrad L.; Horwitz, Benjamin A.; Barry, Kerrie W.; Condon, Bradford J.; Copeland, Alex C.; Dhillon, Braham; Glaser, Fabien; Hesse, Cedar N.; Kosti, Idit; LaButti, Kurt; Lindquist, Erika A.; Lucas, Susan; Salamov, Asaf A.; Bradshaw, Rosie E.; Ciuffetti, Lynda; Hamelin, Richard C.; Kema, Gert H. J.; Lawrence, Christopher; Scott, James A.; Spatafora, Joseph W.; Turgeon, B. Gillian; de Wit, Pierre J. G. M.; Zhong, Shaobin; Goodwin, Stephen B.; Grigoriev, Igor V.

2012-03-13

The class of Dothideomycetes is one of the largest and most diverse groups of fungi. Many are plant pathogens and pose a serious threat to agricultural crops grown for biofuel, food or feed. Most Dothideomycetes have only a single host and related species can have very diverse host plants. Eighteen genomes of Dothideomycetes have currently been sequenced by the Joint Genome Institute and other sequencing centers. Here we describe the results of comparative analyses of the fungi in this group.

WITHIN-POPULATION GENETIC DIVERSITY OF CLIMBING PLANTS AND TREES IN A TEMPERATE FOREST IN CENTRAL CHILE

OpenAIRE

Torres-Díaz, Cristian; Ruiz, Eduardo; Salgado-Luarte, Cristian; Molina-Montenegro, Marco A; Gianoli, Ernesto

2013-01-01

The climbing habit is a key innovation in angiosperm evolution: climbing plant taxa have greater species richness than their non-climbing sister groups. It is considered that highly diversified clades should show increased among-population genetic differentiation. Less clear is the expected pattern regarding within-population genetic diversity in speciose lineages. We tested the hypothesis of greater within-population genetic diversity in climbing plants compared to trees in a temperate fores...

Effects of experimental nitrogen additions on plant diversity in tropical forests of contrasting disturbance regimes in southern China

International Nuclear Information System (INIS)

Lu Xiankai; Mo Jiangming; Gilliam, Frank S.; Yu Guirui; Zhang Wei; Fang Yunting; Huang Juan

2011-01-01

Responses of understory plant diversity to nitrogen (N) additions were investigated in reforested forests of contrasting disturbance regimes in southern China from 2003 to 2008: disturbed forest (with harvesting of understory vegetation and litter) and rehabilitated forest (without harvesting). Experimental additions of N were administered as the following treatments: Control, 50 kg N ha -1 yr -1 , and 100 kg N ha -1 yr -1 . Nitrogen additions did not significantly affect understory plant richness, density, and cover in the disturbed forest. Similarly, no significant response was found for canopy closure in this forest. In the rehabilitated forest, species richness and density showed no significant response to N additions; however, understory cover decreased significantly in the N-treated plots, largely a function of a significant increase in canopy closure. Our results suggest that responses of plant diversity to N deposition may vary with different land-use history, and rehabilitated forests may be more sensitive to N deposition. - Highlights: → Nitrogen addition had no significant effect on understory plant diversity in the disturbed forest. → Nitrogen addition significantly decreased understory plant cover. → Nitrogen addition had no effect on richness and density in the rehabilitated forest. → The decrease is largely a function of a significant increase in canopy closure. → Land-use practices may dominate the responses of plant diversity to N addition. - Research in disturbed forests of southeastern China demonstrates that land-use history can substantially alter effects of excess nitrogen deposition on plant diversity of tropical forest ecosystems.

Taxonomic and phylogenetic diversity of vascular plants at Ma'anling volcano urban park in tropical Haikou, China: Reponses to soil properties.

Science.gov (United States)

Cheng, Xia-Lan; Yuan, Lang-Xing; Nizamani, Mir Mohammad; Zhu, Zhi-Xin; Friedman, Cynthia Ross; Wang, Hua-Feng

2018-01-01

Anthropogenic processes and socio-economic factors play important roles in shaping plant diversity in urban parks. To investigate how plant diversity of Ma' anling urban volcano park in Hainan Province, China respond to these factors, we carried out a field investigation on the taxonomic and phylogenetic diversity of vascular plants and soil properties in this area. We found 284 species of vascular plants belonging to 88 families and 241 genera, which included 194 native species, 23 invasive species, 31 naturalized species, 40 cultivars, and 4 rare / endangered plant species. Tree composition and richness significantly varied between different vegetation formations (plantation, secondary forest, and abandoned land). Plant species richness and community composition were significantly affected by elevation (El), soil water content (WC), total soil nitrogen (TN) and soil organic matter (SOM). There were significant diversity differences between plantations and abandoned lands, but not between the plantations and secondary forests. The flora in the study site was tropical in nature, characterized by pantropic distributions. Compared to adjacent areas, floristic composition in the study site was most similar to that of Guangdong, followed by that of Vietnam. Our study revealed the diversity patterns of volcanic plants and provided the basis for future planning of plant conservation, such as preserving plant species, maintaining plant habitats, and coordinating plant management in this region.

Genotypic and phenotypic diversity of Bacillus spp. isolated from steel plant waste

Directory of Open Access Journals (Sweden)

Chartone-Souza Edmar

2008-10-01

Full Text Available Abstract Background Molecular studies of Bacillus diversity in various environments have been reported. However, there have been few investigations concerning Bacillus in steel plant environments. In this study, genotypic and phenotypic diversity and phylogenetic relationships among 40 bacterial isolates recovered from steel plant waste were investigated using classical and molecular methods. Results 16S rDNA partial sequencing assigned all the isolates to the Bacillus genus, with close genetic relatedness to the Bacillus subtilis and Bacillus cereus groups, and to the species Bacillus sphaericus. tDNA-intergenic spacer length polymorphisms and the 16S–23S intergenic transcribed spacer region failed to identify the isolates at the species level. Genomic diversity was investigated by molecular typing with rep (repetitive sequence based PCR using the primer sets ERIC2 (enterobacterial repetitive intergenic consensus, (GTG5, and BOXAIR. Genotypic fingerprinting of the isolates reflected high intraspecies and interspecies diversity. Clustering of the isolates using ERIC-PCR fingerprinting was similar to that obtained from the 16S rRNA gene phylogenetic tree, indicating the potential of the former technique as a simple and useful tool for examining relationships among unknown Bacillus spp. Physiological, biochemical and heavy metal susceptibility profiles also indicated considerable phenotypic diversity. Among the heavy metal compounds tested Zn, Pb and Cu were least toxic to the bacterial isolates, whereas Ag inhibited all isolates at 0.001 mM. Conclusion Isolates with identical 16S rRNA gene sequences had different genomic fingerprints and differed considerably in their physiological capabilities, so the high levels of phenotypic diversity found in this study are likely to have ecological relevance.

Root chemistry and soil fauna, but not soil abiotic conditions explain the effects of plant diversity on root decomposition

NARCIS (Netherlands)

Chen, Hongmei; Oram, Natalie J.; Barry, Kathryn E.; Mommer, Liesje; Ruijven, van Jasper; Kroon, de Hans; Ebeling, Anne; Eisenhauer, Nico; Fischer, Christine; Gleixner, Gerd; Gessler, Arthur; González Macé, Odette; Hacker, Nina; Hildebrandt, Anke; Lange, Markus; Scherer-lorenzen, Michael; Scheu, Stefan; Oelmann, Yvonne; Wagg, Cameron; Wilcke, Wolfgang; Wirth, Christian; Weigelt, Alexandra

2017-01-01

Plant diversity influences many ecosystem functions including root decomposition. However, due to the presence of multiple pathways via which plant diversity may affect root decomposition, our mechanistic understanding of their relationships is limited. In a grassland biodiversity experiment, we

Climate-suitable planting as a strategy for maintaining forest productivity and functional diversity.

Science.gov (United States)

Duveneck, Matthew J; Scheller, Robert M

2015-09-01

Within the time frame of the longevity of tree species, climate change will change faster than the ability of natural tree migration. Migration lags may result in reduced productivity and reduced diversity in forests under current management and climate change. We evaluated the efficacy of planting climate-suitable tree species (CSP), those tree species with current or historic distributions immediately south of a focal landscape, to maintain or increase aboveground biomass productivity, and species and functional diversity. We modeled forest change with the LANDIS-II forest simulation model for 100 years (2000-2100) at a 2-ha cell resolution and five-year time steps within two landscapes in the Great Lakes region (northeastern Minnesota and northern lower Michigan, USA). We compared current climate to low- and high-emission futures. We simulated a low-emission climate future with the Intergovernmental Panel on Climate Change (IPCC) 2007 B1 emission scenario and the Parallel Climate Model Global Circulation Model (GCM). We simulated a high-emission climate future with the IPCC A1FI emission scenario and the Geophysical Fluid Dynamics Laboratory (GFDL) GCM. We compared current forest management practices (business-as-usual) to CSP management. In the CSP scenario, we simulated a target planting of 5.28% and 4.97% of forested area per five-year time step in the Minnesota and Michigan landscapes, respectively. We found that simulated CSP species successfully established in both landscapes under all climate scenarios. The presence of CSP species generally increased simulated aboveground biomass. Species diversity increased due to CSP; however, the effect on functional diversity was variable. Because the planted species were functionally similar to many native species, CSP did not result in a consistent increase nor decrease in functional diversity. These results provide an assessment of the potential efficacy and limitations of CSP management. These results have

Size, age and composition: characteristics of plant taxa as diversity predictors of gall-midges (Diptera: Cecidomyiidae

Directory of Open Access Journals (Sweden)

Walter S Araújo

2011-12-01

Full Text Available Many hypotheses have been proposed to explain the diversity of gall-midge insects (Diptera: Cecidomyiidae, some of them taking into account plant diversity. This study aims to test the importance of size, age and composition of host plant taxa in the diversity of Cecidomyiidae. For this we used inventories data on the diversity of galling and host plants in Brazil. We found that Asterales, Myrtales and Malpighiales, were the most important orders, with 34, 33 and 25, gall morphotypes, respectively. The most representative host families were Asteraceae (34 morphotypes, Myrtaceae (23 and Fabaceae (22. In general, the order size and the plant family were good predictors of the galling diversity, but not the taxon age. The most diverse host genera for gall-midges were Mikania, Eugenia and Styrax, with 15, 13 and nine galler species, respectively. The size of plant genera showed no significant relationship with the richness of Cecidomyiidae, contrary to the prediction of the plant taxon size hypothesis. The plant genera with the greatest diversity of galling insects are not necessarily those with the greatest number of species. These results indicate that some plant taxa have a high intrinsic richness of galling insects, suggesting that the plant species composition may be equally or more important for the diversity of gall-midges than the size or age of the host taxon. Rev. Biol. Trop. 59 (4: 1599- 1607. Epub 2011 December 01.Muchas hipótesis se han propuesto para explicar la diversidad de dipteros de la familia Cecidomyiidae, algunos de ellos teniendo en cuenta la diversidad de las plantas. Este estudio tiene como objetivo probar la importancia del tamaño, la edad y la composición de las plantas en la diversidad de Cecidomyiidae, a través de los inventarios de las agallas y las plantas hospederas, en Brasil. Asterales, Malpighiales y Myrtales fueron los órdenes más importantes, con 34, 33 y 25 tipos de agallas, respectivamente. Las familias m

Diversity, expression and mRNA targeting abilities of Argonaute-targeting miRNAs among selected vascular plants.

Science.gov (United States)

Jagtap, Soham; Shivaprasad, Padubidri V

2014-12-02

Micro (mi)RNAs are important regulators of plant development. Across plant lineages, Dicer-like 1 (DCL1) proteins process long ds-like structures to produce micro (mi) RNA duplexes in a stepwise manner. These miRNAs are incorporated into Argonaute (AGO) proteins and influence expression of RNAs that have sequence complementarity with miRNAs. Expression levels of AGOs are greatly regulated by plants in order to minimize unwarranted perturbations using miRNAs to target mRNAs coding for AGOs. AGOs may also have high promoter specificity-sometimes expression of AGO can be limited to just a few cells in a plant. Viral pathogens utilize various means to counter antiviral roles of AGOs including hijacking the host encoded miRNAs to target AGOs. Two host encoded miRNAs namely miR168 and miR403 that target AGOs have been described in the model plant Arabidopsis and such a mechanism is thought to be well conserved across plants because AGO sequences are well conserved. We show that the interaction between AGO mRNAs and miRNAs is species-specific due to the diversity in sequences of two miRNAs that target AGOs, sequence diversity among corresponding target regions in AGO mRNAs and variable expression levels of these miRNAs among vascular plants. We used miRNA sequences from 68 plant species representing 31 plant families for this analysis. Sequences of miR168 and miR403 are not conserved among plant lineages, but surprisingly they differ drastically in their sequence diversity and expression levels even among closely related plants. Variation in miR168 expression among plants correlates well with secondary structures/length of loop sequences of their precursors. Our data indicates a complex AGO targeting interaction among plant lineages due to miRNA sequence diversity and sequences of miRNA targeting regions among AGO mRNAs, thus leading to the assumption that the perturbations by viruses that use host miRNAs to target antiviral AGOs can only be species-specific. We also show

Comparisons of diazotrophic communities in native and agricultural desert ecosystems reveal plants as important drivers in diversity.

Science.gov (United States)

Köberl, Martina; Erlacher, Armin; Ramadan, Elshahat M; El-Arabi, Tarek F; Müller, Henry; Bragina, Anastasia; Berg, Gabriele

2016-02-01

Diazotrophs provide the only biological source of fixed atmospheric nitrogen in the biosphere. Although they are the key player for plant-available nitrogen, less is known about their diversity and potential importance in arid ecosystems. We investigated the nitrogenase gene diversity in native and agricultural desert soil as well as within root-associated microbiota of medicinal plants grown in Egypt through the combination of nifH-specific qPCR, fingerprints, amplicon pyrosequencing and fluorescence in situ hybridization-confocal laser scanning microscopy. Although the diazotrophic microbiota were characterized by generally high abundances and diversity, statistically significant differences were found between both soils, the different microhabitats, and between the investigated plants (Matricaria chamomilla L., Calendula officinalis L. and Solanum distichum Schumach. and Thonn.). We observed a considerable community shift from desert to agriculturally used soil that demonstrated a higher abundance and diversity in the agro-ecosystem. The endorhiza was characterized by lower abundances and only a subset of species when compared to the rhizosphere. While the microbiomes of the Asteraceae were similar and dominated by potential root-nodulating rhizobia acquired primarily from soil, the perennial S. distichum generally formed associations with free-living nitrogen fixers. These results underline the importance of diazotrophs in desert ecosystems and additionally identify plants as important drivers in functional gene pool diversity. © FEMS 2015.

Directed seed dispersal of Piper by Carollia perspicillata and its effect on understory plant diversity and folivory.

Science.gov (United States)

Salazar, Diego; Kelm, Detlev H; Salazar, Diego

2013-11-01

Directed dispersal occurs when seeds are differentially deposited to sites where offspring survivorship is higher than at randomly chosen sites. Traditionally, characteristics of the dispersal target sites that could increase survivorship of the dispersed plants are thought to be intrinsic to the sites. If directed dispersal is constant over extended periods of time, however, it is likely that nonrandom patterns of dispersal could modify the ecological characteristics of the target site in ways that could increase survivorship and fitness of the dispersed plants. Here we report patterns of Piper diversity (richness, equitability, and similarity) and Piper folivory within plots near natural or artificial roosts of Carollia perspicillata vs. similar plots without bat roosts. Plots with bat roosts, both natural and artificial, had significantly higher Piper species diversity. Additionally, we found that plots with a higher Piper species diversity showed less specialist folivory, higher generalist folivory, and lower total herbivore leaf damage than plots with low Piper diversity. Finally, plots with bat roosts also showed less specialist folivory, lower generalist folivory, and lower total folivory when compared to plots without roosts. We propose that long-lasting nonrandom patterns of seed dispersal can change the local ecological characteristics of target sites via changes in plant diversity, and that these changes are likely to reduce the local rates of folivory and, therefore, increase seed and adult plant survivorship.

Out of the shadows : multiple nutrient limitations drive relationships among biomass, light and plant diversity

NARCIS (Netherlands)

Harpole, W. Stanley; Sullivan, Lauren L.; Lind, Eric M.; Firn, Jennifer; Adler, Peter B.; Borer, Elizabeth T.; Chase, Jonathan; Fay Jennifer Firn, Philip A.; Hautier, Yann; Hillebrand, Helmut; MacDougall, Andrew S.; Seabloom, Eric W.; Bakker, Jonathan D.; Cadotte, Marc W; Chaneton, Enrique J; Chu, Chengjin; Hagenah, Nicole; Kirkman, Kevin; La Pierre, Kimberly J.; Moore, Joslin L.; Morgan, John W.; Prober, Suzanne M.; Risch, Anita C.; Schuetz, Martin; Stevens, Carly J.

2017-01-01

The paradigmatic hypothesis for the effect of fertilisation on plant diversity represents a one-dimensional trade-off for plants competing for below-ground nutrients (generically) and above-ground light: fertilisation reduces competition for nutrients while increasing biomass and thereby shifts

Diverse plant and animal genetic records from Holocene and Pleistocene sediments

DEFF Research Database (Denmark)

Willerslev, E.; Hansen, Anders J.; Binladen, J.

2003-01-01

Genetic analyses of permafrost and temperate sediments reveal that plant and animal DNA may be preserved for long periods, even in the absence of obvious macrofossils. In Siberia, five permafrost cores ranging from 400,000 to 10,000 years old contained at least 19 different plant taxa, including...... the oldest authenticated ancient DNA sequences known, and megafaunal sequences including mammoth, bison, and horse. The genetic data record a number of dramatic changes in the taxonomic diversity and composition of Beringian vegetation and fauna. Temperate cave sediments in New Zealand also yielded DNA...

Interaction between cardiac myosin-binding protein C and formin Fhod3.

Science.gov (United States)

Matsuyama, Sho; Kage, Yohko; Fujimoto, Noriko; Ushijima, Tomoki; Tsuruda, Toshihiro; Kitamura, Kazuo; Shiose, Akira; Asada, Yujiro; Sumimoto, Hideki; Takeya, Ryu

2018-05-08

Mutations in cardiac myosin-binding protein C (cMyBP-C) are a major cause of familial hypertrophic cardiomyopathy. Although cMyBP-C has been considered to regulate the cardiac function via cross-bridge arrangement at the C-zone of the myosin-containing A-band, the mechanism by which cMyBP-C functions remains unclear. We identified formin Fhod3, an actin organizer essential for the formation and maintenance of cardiac sarcomeres, as a cMyBP-C-binding protein. The cardiac-specific N-terminal Ig-like domain of cMyBP-C directly interacts with the cardiac-specific N-terminal region of Fhod3. The interaction seems to direct the localization of Fhod3 to the C-zone, since a noncardiac Fhod3 variant lacking the cMyBP-C-binding region failed to localize to the C-zone. Conversely, the cardiac variant of Fhod3 failed to localize to the C-zone in the cMyBP-C-null mice, which display a phenotype of hypertrophic cardiomyopathy. The cardiomyopathic phenotype of cMyBP-C-null mice was further exacerbated by Fhod3 overexpression with a defect of sarcomere integrity, whereas that was partially ameliorated by a reduction in the Fhod3 protein levels, suggesting that Fhod3 has a deleterious effect on cardiac function under cMyBP-C-null conditions where Fhod3 is aberrantly mislocalized. Together, these findings suggest the possibility that Fhod3 contributes to the pathogenesis of cMyBP-C-related cardiomyopathy and that Fhod3 is critically involved in cMyBP-C-mediated regulation of cardiac function via direct interaction.

Effects of plant diversity on primary production and species interactions in brackish water angiosperm communities

DEFF Research Database (Denmark)

Salo, Tiina; Gustafsson, Camilla; Boström, Christoffer

2009-01-01

Research on plant biodiversity and ecosystem functioning has mainly focused on terrestrial ecosystems, and our understanding of how plant species diversity and interactions affect processes in marine ecosystems is still limited. To investigate if plant species richness and composition influence...... plant productivity in brackish water angiosperm communities, a 14 wk field experiment was conducted. Using a replacement design with a standardized initial aboveground biomass, shoots of Zostera marina, Potamogeton filiformis and P. perfoliatus were planted on a shallow, sandy bottom in replicated...

Effect of wetland management: are lentic wetlands refuges of plant-species diversity in the Andean–Orinoco Piedmont of Colombia?

Directory of Open Access Journals (Sweden)

Johanna I. Murillo-Pacheco

2016-08-01

Full Text Available Accelerated degradation of the wetlands and fragmentation of surrounding vegetation in the Andean–Orinoco Piedmont are the main threats to diversity and ecological integrity of these ecosystems; however, information on this topic is of limited availability. In this region, we evaluated the value of 37 lentic wetlands as reservoirs of woody and aquatic plants and analyzed diversity and changes in species composition within and among groups defined according to management given by: (1 type (swamps, heronries, rice fields, semi-natural lakes, constructed lakes and fish farms and (2 origins (natural, mixed and artificial. A total of 506 plant species were recorded: 80% woody and 20% aquatic. Of these, 411 species (81% were considered species typical of the area (Meta Piedmont distribution. Diversity patterns seem to be driven by high landscape heterogeneity and wetland management. The fish farms presented the highest diversity of woody plants, while swamps ranked highest for aquatic plant diversity. Regarding wetland origin, the artificial systems were the most diverse, but natural wetlands presented the highest diversity of typical species and can therefore be considered representative ecosystems at the regional scale. Our results suggest that lentic wetlands act as refuges for native vegetation of Meta Piedmont forest, hosting 55% of the woody of Piedmont species and 29% of the aquatic species of Orinoco basin. The wetlands showed a high species turnover and the results indicated that small wetlands (mean ± SD: size = 11 ± 18.7 ha, with a small area of surrounding forest (10 ± 8.6 ha supported high local and regional plant diversity. To ensure long-term conservation of lentic wetlands, it is necessary to develop management and conservation strategies that take both natural and created wetlands into account.

Longterm changes in plant diversity of grasslands under agricultural and conservation management

NARCIS (Netherlands)

Snoo, de G.R.; Naus, N.; Verhulst, J.; Ruijven, van J.; Schaffers, A.P.

2012-01-01

Question In many industrialized countries biodiversity is declining. Although changes in species composition and species richness have been documented for many individual systems, little long-term research has been done on a regional scale. We compared the temporal patterns of plant diversity over

Diversity of arbuscular mycorrhizal fungi in grassland spontaneously developed on area polluted by a fertilizer plant

International Nuclear Information System (INIS)

Renker, C.; Blanke, V.; Buscot, F.

2005-01-01

Mycorrhizal colonization and diversity of arbuscular mycorrhizal fungi (AMF) were analyzed in a calcareous grassland with residual phosphate contamination 10 years after the closure of a pollutant fertilizer plant in Thuringia (Germany). AMF were detected in 21 of 22 plant species analyzed. Mean mycorrhization levels reached up to 74.5% root length colonized. AMF diversity was analyzed based on 104 sequences of the internal transcribed spacer (ITS) of the ribosomal DNA. Phylogenetic analyses revealed a total of 6 species all belonging to the genus Glomus. There was no overlap between species detected as active mycorrhizas on roots (2 taxa) or as spores (4 taxa). Compared to the regional context, the diversity of AMF at our field site was reduced, which may reflect a residual disturbance effect. However, none of the detected species was exclusive to the polluted site as they are commonly found in the region. - Almost all plant species were mycorrhizal

Highly Diverse Endophytic and Soil Fusarium oxysporum Populations Associated with Field-Grown Tomato Plants

Science.gov (United States)

Demers, Jill E.; Gugino, Beth K.

2014-01-01

The diversity and genetic differentiation of populations of Fusarium oxysporum associated with tomato fields, both endophytes obtained from tomato plants and isolates obtained from soil surrounding the sampled plants, were investigated. A total of 609 isolates of F. oxysporum were obtained, 295 isolates from a total of 32 asymptomatic tomato plants in two fields and 314 isolates from eight soil cores sampled from the area surrounding the plants. Included in this total were 112 isolates from the stems of all 32 plants, a niche that has not been previously included in F. oxysporum population genetics studies. Isolates were characterized using the DNA sequence of the translation elongation factor 1α gene. A diverse population of 26 sequence types was found, although two sequence types represented nearly two-thirds of the isolates studied. The sequence types were placed in different phylogenetic clades within F. oxysporum, and endophytic isolates were not monophyletic. Multiple sequence types were found in all plants, with an average of 4.2 per plant. The population compositions differed between the two fields but not between soil samples within each field. A certain degree of differentiation was observed between populations associated with different tomato cultivars, suggesting that the host genotype may affect the composition of plant-associated F. oxysporum populations. No clear patterns of genetic differentiation were observed between endophyte populations and soil populations, suggesting a lack of specialization of endophytic isolates. PMID:25304514

Incorporating biodiversity into rangeland health: Plant species richness and diversity in great plains grasslands

Science.gov (United States)

Symstad, Amy J.; Jonas, Jayne L.

2011-01-01

Indicators of rangeland health generally do not include a measure of biodiversity. Increasing attention to maintaining biodiversity in rangelands suggests that this omission should be reconsidered, and plant species richness and diversity are two metrics that may be useful and appropriate. Ideally, their response to a variety of anthropogenic and natural drivers in the ecosystem of interest would be clearly understood, thereby providing a means to diagnose the cause of decline in an ecosystem. Conceptual ecological models based on ecological principles and hypotheses provide a framework for this understanding, but these models must be supported by empirical evidence if they are to be used for decision making. To that end, we synthesize results from published studies regarding the responses of plant species richness and diversity to drivers that are of management concern in Great Plains grasslands, one of North America's most imperiled ecosystems. In the published literature, moderate grazing generally has a positive effect on these metrics in tallgrass prairie and a neutral to negative effect in shortgrass prairie. The largest published effects on richness and diversity were caused by moderate grazing in tallgrass prairies and nitrogen fertilization in shortgrass prairies. Although weather is often cited as the reason for considerable annual fluctuations in richness and diversity, little information about the responses of these metrics to weather is available. Responses of the two metrics often diverged, reflecting differences in their sensitivity to different types of changes in the plant community. Although sufficient information has not yet been published for these metrics to meet all the criteria of a good indicator in Great Plains Grasslands, augmenting current methods of evaluating rangeland health with a measure of plant species richness would reduce these shortcomings and provide information critical to managing for biodiversity.

Diversity of Paenibacillus polymyxa strains isolated from the rhizosphere of maize planted in Cerrado soil

NARCIS (Netherlands)

Weid, von der I.; Paiva, E.; Nobrega, A.; Elsas, van J.D.; Seldin, L.

2000-01-01

Paenibacillus polymyxa populations present in the rhizosphere of maize (cultivar BR-201) planted in Cerrado soil were investigated in order to assess their diversity at four stages of plant growth. A total of 67 strains were isolated and all strains were identified as P. polymyxa by classical

Forest structure and plant diversity in maritime pine (Pinus pinaster Ait.) stands in central Spain

Energy Technology Data Exchange (ETDEWEB)

Osorio, L. F.; Bravo, F.; Zaldivar, P.; Pando, V.

2009-07-01

The relationship between forest structure and plant diversity in Mediterranean Maritime pine stands (Pinus pinaster Ait.) in the Iberian Range (Spain) was studied. Forty eight stands were sampled. In each, a circular plot (15 m radius) and a transect (25*1 m{sup 2}) were established to estimate stand variables and record presence and abundance of vascular species respectively. Canonical correlation analysis (CCA), simple correlations and multiple stepwise linear regressions were used to explore the relationship between plant diversity and forest structure. Correlation between diversity measurements and stand variables is very weak, but significant correlations were found when evaluating each set of variables separately. Presence and cover of some species (for instance, Veronica arvensis L. or Micropyrum tenellum (L.) Link) is correlated with stand variables; however, determination coefficients found in step-by-step regression are not significant. (Author) 34 refs.

Legacy effects of no-analogue disturbances alter plant community diversity and composition in semi-arid sagebrush steppe

Science.gov (United States)

Ripplinger, Julie; Franklin, Janet; Edwards, Thomas C.

2015-01-01

Questions(i) What role does the type of managed disturbance play in structuring sagebrush steppe plant communities? (ii) How does the composition of post-disturbance plant communities change with time since disturbance? (iii) Does plant community diversity change over time following managed disturbance?LocationField study within the sagebrush steppe ecosystem. Rich County, Utah, USA.MethodsWe developed a chronosequence spanning up to 50 yrs post-treatment to study sagebrush steppe vegetation dynamics. Direct ordination was used to examine plant community composition by managed disturbance type and time since disturbance, and factorial analysis of covariance was used to examine diversity dynamics following disturbance. Indicator species values were calculated in order to identify characteristic species for each disturbance type.ResultsPlant communities experienced a shift toward distinct community composition for each of the three managed disturbance types, and gave no indication of returning to untreated community composition or diversity. Small post-disturbance increases in the number of non-native grass species were observed in the treatments relative to reference, with native forb species making the largest contribution to altered composition. On fire- and chemically-treated sites the proportional native forb species richness increased over time since disturbance, while the proportional contribution of non-native forbs to total species richness decreased. For all three treatment types, native grasses contributed less on average to total richness than on reference sites, while non-native grasses made up a higher proportion of total richness.ConclusionsCommon shrubland management techniques have legacy effects on the composition and diversity of sagebrush steppe plant communities, and no-analogue disturbances, such as chemical or mechanical treatments, have more pronounced legacy effects than treatments similar to natural disturbance regimes (fire). This study

Congruence and diversity of butterfly-host plant associations at higher taxonomic levels.

Science.gov (United States)

Ferrer-Paris, José R; Sánchez-Mercado, Ada; Viloria, Ángel L; Donaldson, John

2013-01-01

We aggregated data on butterfly-host plant associations from existing sources in order to address the following questions: (1) is there a general correlation between host diversity and butterfly species richness?, (2) has the evolution of host plant use followed consistent patterns across butterfly lineages?, (3) what is the common ancestral host plant for all butterfly lineages? The compilation included 44,148 records from 5,152 butterfly species (28.6% of worldwide species of Papilionoidea) and 1,193 genera (66.3%). The overwhelming majority of butterflies use angiosperms as host plants. Fabales is used by most species (1,007 spp.) from all seven butterfly families and most subfamilies, Poales is the second most frequently used order, but is mostly restricted to two species-rich subfamilies: Hesperiinae (56.5% of all Hesperiidae), and Satyrinae (42.6% of all Nymphalidae). We found a significant and strong correlation between host plant diversity and butterfly species richness. A global test for congruence (Parafit test) was sensitive to uncertainty in the butterfly cladogram, and suggests a mixed system with congruent associations between Papilionidae and magnoliids, Hesperiidae and monocots, and the remaining subfamilies with the eudicots (fabids and malvids), but also numerous random associations. The congruent associations are also recovered as the most probable ancestral states in each node using maximum likelihood methods. The shift from basal groups to eudicots appears to be more likely than the other way around, with the only exception being a Satyrine-clade within the Nymphalidae that feed on monocots. Our analysis contributes to the visualization of the complex pattern of interactions at superfamily level and provides a context to discuss the timing of changes in host plant utilization that might have promoted diversification in some butterfly lineages.

Congruence and diversity of butterfly-host plant associations at higher taxonomic levels.

Directory of Open Access Journals (Sweden)

José R Ferrer-Paris

Full Text Available We aggregated data on butterfly-host plant associations from existing sources in order to address the following questions: (1 is there a general correlation between host diversity and butterfly species richness?, (2 has the evolution of host plant use followed consistent patterns across butterfly lineages?, (3 what is the common ancestral host plant for all butterfly lineages? The compilation included 44,148 records from 5,152 butterfly species (28.6% of worldwide species of Papilionoidea and 1,193 genera (66.3%. The overwhelming majority of butterflies use angiosperms as host plants. Fabales is used by most species (1,007 spp. from all seven butterfly families and most subfamilies, Poales is the second most frequently used order, but is mostly restricted to two species-rich subfamilies: Hesperiinae (56.5% of all Hesperiidae, and Satyrinae (42.6% of all Nymphalidae. We found a significant and strong correlation between host plant diversity and butterfly species richness. A global test for congruence (Parafit test was sensitive to uncertainty in the butterfly cladogram, and suggests a mixed system with congruent associations between Papilionidae and magnoliids, Hesperiidae and monocots, and the remaining subfamilies with the eudicots (fabids and malvids, but also numerous random associations. The congruent associations are also recovered as the most probable ancestral states in each node using maximum likelihood methods. The shift from basal groups to eudicots appears to be more likely than the other way around, with the only exception being a Satyrine-clade within the Nymphalidae that feed on monocots. Our analysis contributes to the visualization of the complex pattern of interactions at superfamily level and provides a context to discuss the timing of changes in host plant utilization that might have promoted diversification in some butterfly lineages.

Diversity, Distribution, and Abundance of Plants in Lewoh-Lebang in the Lebialem Highlands of Southwestern Cameroon

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B. A. Fonge

2013-01-01

Full Text Available A survey was conducted between October 2010 and June 2011 to determine the diversity, distribution, and abundance of plants in 4 sites of the Lebialem highlands and to relate species diversity and abundance to altitude and soil types. Twelve (12 plots, each of 1 ha (250 × 40 m, were surveyed at the submontane and montane altitudes of the sites. One hundred (100 species belonging to 82 genera were identified with the genera Cola and Psychotria being the most represented. Vulnerable species included Guarea thompsonii, Schefflera hierniana, Allanblackia gabonensis, Cyclomorpha solmsii, Vepris trifoliolata, and Xylopia africana. Species such as Xymalos monospora, Tricalysia atherura, and Piptostigma oyemense present in the study area were endemic to Cameroon. Diversity and distribution of plants were affected by parameters such as the altitude and the soil type. Soil analysis revealed that diversity in the study area was affected by the organic carbon, nitrogen, calcium, and the cation exchange capacity of the soil.

Can phylogeny predict chemical diversity and potential medicinal activity of plants? A case study of Amaryllidaceae

DEFF Research Database (Denmark)

Rønsted, Nina; Symonds, Matthew R. E.; Birkholm, Trine

2012-01-01

a predictive approach enabling more efficient selection of plants for the development of traditional medicine and lead discovery. However, this relationship has rarely been rigorously tested and the potential predictive power is consequently unknown. Results: We produced a phylogenetic hypothesis......Background: During evolution, plants and other organisms have developed a diversity of chemical defences, leading to the evolution of various groups of specialized metabolites selected for their endogenous biological function. A correlation between phylogeny and biosynthetic pathways could offer...... for the medicinally important plant subfamily Amaryllidoideae (Amaryllidaceae) based on parsimony and Bayesian analysis of nuclear, plastid, and mitochondrial DNA sequences of over 100 species. We tested if alkaloid diversity and activity in bioassays related to the central nervous system are significantly correlated...

The relationship between soil physical properties and alpine plant diversity on Qinghai-Tibet Plateau

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Lin Tang

2015-04-01

Full Text Available Through a large-scale research, we examined the heterogeneity of soil properties and plant diversity, as well as their relationships across alpine grassland types on Qinghai-Tibet Plateau. The soil pH and EC value increased with the constant deepening of the soil in all the three alpine grassland types which in order of absolute value in every soil layer were alpine desert steppe, alpine steppe and alpine meadow. Among the three grassland types, the alpine meadow possessed the highest SM but the lowest SBD. For plant diversity, alpine meadow was the highest, alpine desert steppe ranked the second and alpine steppe was the last. SM and SBD were the highest influential soil physical properties to species richness, but with opposite effects.

Impacts of invasive plants on animal diversity in South Africa: A synthesis

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Susana Clusella-Trullas

2017-03-01

Full Text Available Background: Increasing numbers of invasive alien plant (IAP species are establishing around the globe and can have negative effects on resident animal species function and diversity. These impacts depend on a variety of factors, including the extent of invasion, the region and the taxonomic group affected. These context dependencies make extrapolations of IAP impacts on resident biota from region to region a substantial challenge. Objectives: Here, we synthesised data from studies that have examined the effects of IAPs on animal diversity in South Africa. Our focus is on ectothermic organisms (reptiles, amphibians and invertebrates. Method: We sourced relevant articles using keywords relating to (1 the effects of IAPs on species diversity (abundance, richness and composition, (2 the IAP and (3 the native ectotherm. We extracted the taxonomic and spatial coverage of IAPs and affected native species and assessed the extent of information given on potential mechanisms driving IAP impacts. Results: Across the 42 studies, IAPs had a decreasing or neutral effect on native animal abundance and richness and significantly changed species composition. This review highlighted the paucity of studies and the research deficits in taxonomic and geographic coverage and in the mechanisms underlying IAP impacts on ectotherms. Conclusion: By assessing the status of knowledge regarding the impacts of IAPs on resident animal species in South Africa, this study identifies information gaps and research priorities at the country level with a view to informing monitoring and conservation efforts, such as alien plant removal and control programmes, and ensuring that endemic terrestrial animal diversity is maintained.

Diversity of beetle genes encoding novel plant cell wall degrading enzymes.

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Yannick Pauchet

Full Text Available Plant cell walls are a heterogeneous mixture of polysaccharides and proteins that require a range of different enzymes to degrade them. Plant cell walls are also the primary source of cellulose, the most abundant and useful biopolymer on the planet. Plant cell wall degrading enzymes (PCWDEs are therefore important in a wide range of biotechnological processes from the production of biofuels and food to waste processing. However, despite the fact that the last common ancestor of all deuterostomes was inferred to be able to digest, or even synthesize, cellulose using endogenous genes, all model insects whose complete genomes have been sequenced lack genes encoding such enzymes. To establish if the apparent "disappearance" of PCWDEs from insects is simply a sampling problem, we used 454 mediated pyrosequencing to scan the gut transcriptomes of beetles that feed on a variety of plant derived diets. By sequencing the transcriptome of five beetles, and surveying publicly available ESTs, we describe 167 new beetle PCWDEs belonging to eight different enzyme families. This survey proves that these enzymes are not only present in non-model insects but that the multigene families that encode them are apparently undergoing complex birth-death dynamics. This reinforces the observation that insects themselves, and not just their microbial symbionts, are a rich source of PCWDEs. Further it emphasises that the apparent absence of genes encoding PCWDEs from model organisms is indeed simply a sampling artefact. Given the huge diversity of beetles alive today, and the diversity of their lifestyles and diets, we predict that beetle guts will emerge as an important new source of enzymes for use in biotechnology.

Membrane Bioreactor-Based Wastewater Treatment Plant in Saudi Arabia: Reduction of Viral Diversity, Load, and Infectious Capacity

KAUST Repository

Jumat, Muhammad

2017-07-18

A membrane bioreactor (MBR)-based wastewater treatment plant in Saudi Arabia was assessed over a nine-month period for virus removal efficiency. Viral diversity was detected using omics-based approaches. Log reduction values (LRV) of Adenoviruses (AdV) and Enteroviruses (EV) were enumerated using digital polymerase chain reaction (dPCR) and assessed for infectivity using fluorescence-based infection assays. MBR treatment was successful in reducing viral diversity. Plant viruses remained abundant in the treated effluent. Human enteric viruses were present in lower abundance than plant viruses, and were reduced by MBR at varying LRV. AdV copy numbers were reduced by 3.7-log. Infectious AdV was not detected in the effluent. EV copy numbers were reduced by 1.7-log post MBR and infectious EV decreased by an average of 2.0-log. Infectious EV was detected in the chlorinated effluent, occasionally in concentrations that approximate to its 50% infectious dose. Overall, results indicated that a MBR-based wastewater treatment plant (WWTP) effectively reduces viral diversity, viral load, and infectious capacity by up to 4-logs. These findings suggest potential concerns associated with plant and human enteric viruses for reuse events in this country. Local guidelines for assessment of treated water quality should take into consideration both infectious viral concentration and LRV.

Plant and bird diversity in natural forests and in native and exotic plantations in NW Portugal

Science.gov (United States)

Proença, Vânia M.; Pereira, Henrique M.; Guilherme, João; Vicente, Luís

2010-03-01

Forest ecosystems have been subjected to continuous dynamics between deforestation and forestation. Assessing the effects of these processes on biodiversity could be essential for conservation planning. We analyzed patterns of species richness, diversity and evenness of plants and birds in patches of natural forest of Quercus spp. and in stands of native Pinus pinaster and exotic Eucalyptus globulus in NW Portugal. We analyzed data of forest and non-forest species separately, at the intra-patch, patch and inter-patch scales. Forest plant richness, diversity and evenness were higher in oak forest than in pine and eucalypt plantations. In total, 52 species of forest plants were observed in oak forest, 33 in pine plantation and 28 in eucalypt plantation. Some forest species, such as Euphorbia dulcis, Omphalodes nitida and Eryngium juresianum, were exclusively or mostly observed in oak forest. Forest bird richness and diversity were higher in both oak and pine forests than in eucalypt forest; evenness did not differ among forests. In total, 16 species of forest birds were observed in oak forest, 18 in pine forest and 11 in eucalypt forest. Species such as Certhia brachydactyla, Sitta europaea and Dendrocopos major were common in oak and/or pine patches but were absent from eucalypt stands. Species-area relationships of forest plants and forest birds in oak patches had consistently a higher slope, at both the intra and inter-patch scales, than species-area relationships of forest species in plantations and non-forest species in oak forest. These findings demonstrate the importance of oak forest for the conservation of forest species diversity, pointing the need to conserve large areas of oak forest due to the apparent vulnerability of forest species to area loss. Additionally, diversity patterns in pine forest were intermediate between oak forest and eucalypt forest, suggesting that forest species patterns may be affected by forest naturalness.

Diversity of herbaceous plants and bacterial communities regulates soil resistome across forest biomes.

Science.gov (United States)

Hu, Hang-Wei; Wang, Jun-Tao; Singh, Brajesh K; Liu, Yu-Rong; Chen, Yong-Liang; Zhang, Yu-Jing; He, Ji-Zheng

2018-04-24

Antibiotic resistance is ancient and prevalent in natural ecosystems and evolved long before the utilization of synthetic antibiotics started, but factors influencing the large-scale distribution patterns of natural antibiotic resistance genes (ARGs) remain largely unknown. Here, a large-scale investigation over 4000 km was performed to profile soil ARGs, plant communities and bacterial communities from 300 quadrats across five forest biomes with minimal human impact. We detected diverse and abundant ARGs in forests, including over 160 genes conferring resistance to eight major categories of antibiotics. The diversity of ARGs was strongly and positively correlated with the diversity of bacteria, herbaceous plants and mobile genetic elements (MGEs). The ARG composition was strongly correlated with the taxonomic structure of bacteria and herbs. Consistent with this strong correlation, structural equation modelling demonstrated that the positive effects of bacterial and herb communities on ARG patterns were maintained even when simultaneously accounting for multiple drivers (climate, spatial predictors and edaphic factors). These findings suggest a paradigm that the interactions between aboveground and belowground communities shape the large-scale distribution of soil resistomes, providing new knowledge for tackling the emerging environmental antibiotic resistance. © 2018 Society for Applied Microbiology and John Wiley & Sons Ltd.

Fire frequency and tree canopy structure influence plant species diversity in a forest-grassland ecotone

Science.gov (United States)

David W. Peterson; Peter B. Reich

2008-01-01

Disturbances and environmental heterogeneity are two factors thought to influence plant species diversity, but their effects are still poorly understood in many ecosystems. We surveyed understory vegetation and measured tree canopy cover on permanent plots spanning an experimental fire frequency gradient to test fire frequency and tree canopy effects on plant species...

Uses and conservation of plant diversity in Ben En National Park, Vietnam

NARCIS (Netherlands)

Hoang, Van Sam

2009-01-01

Ben En National Park is one of the 30 National Parks in Vietnam. In this study its botanical wealth has been comprehensively inventoried as well as the very important roles that plants play in the daily life and economy of the people inhabiting the Park. Floristic diversity - In our survey 1389

Woody plant diversity in sacred forests and fallows in Chiang Mai, Thailand

DEFF Research Database (Denmark)

Junsongduang, A.; Balslev, Henrik; Jampeetong, Arunothai

2014-01-01

All woody plant and seedling diversity was compared in a Karen and a Lawa hill-tribe village in northern Thailand in four different habitats: sacred forests and fallow fields of three ages derived from rotational shifting cultivation (young fallows, 1–2 years old; medium-age fallow, 3-4 years old...

Desert farming benefits from microbial potential in arid soils and promotes diversity and plant health.

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Martina Köberl

Full Text Available BACKGROUND: To convert deserts into arable, green landscapes is a global vision, and desert farming is a strong growing area of agriculture world-wide. However, its effect on diversity of soil microbial communities, which are responsible for important ecosystem services like plant health, is still not known. METHODOLOGY/PRINCIPAL FINDINGS: We studied the impact of long-term agriculture on desert soil in one of the most prominent examples for organic desert farming in Sekem (Egypt. Using a polyphasic methodological approach to analyse microbial communities in soil as well as associated with cultivated plants, drastic effects caused by 30 years of agriculture were detected. Analysing bacterial fingerprints, we found statistically significant differences between agricultural and native desert soil of about 60%. A pyrosequencing-based analysis of the 16S rRNA gene regions showed higher diversity in agricultural than in desert soil (Shannon diversity indices: 11.21/7.90, and displayed structural differences. The proportion of Firmicutes in field soil was significantly higher (37% than in the desert (11%. Bacillus and Paenibacillus play the key role: they represented 96% of the antagonists towards phytopathogens, and identical 16S rRNA sequences in the amplicon library and for isolates were detected. The proportion of antagonistic strains was doubled in field in comparison to desert soil (21.6%/12.4%; disease-suppressive bacteria were especially enriched in plant roots. On the opposite, several extremophilic bacterial groups, e.g., Acidimicrobium, Rubellimicrobium and Deinococcus-Thermus, disappeared from soil after agricultural use. The N-fixing Herbaspirillum group only occurred in desert soil. Soil bacterial communities were strongly driven by the a-biotic factors water supply and pH. CONCLUSIONS/SIGNIFICANCE: After long-term farming, a drastic shift in the bacterial communities in desert soil was observed. Bacterial communities in agricultural

Endophytic fungi from medicinal plant Bauhinia forficata: Diversity and biotechnological potential.

Science.gov (United States)

Bezerra, Jadson D P; Nascimento, Carlos C F; Barbosa, Renan do N; da Silva, Dianny C V; Svedese, Virgínia M; Silva-Nogueira, Eliane B; Gomes, Bruno S; Paiva, Laura M; Souza-Motta, Cristina M

2015-03-01

Bauhinia forficata is native to South America and used with relative success in the folk medicine in Brazil. The diversity, antibacterial activity, and extracellular hydrolytic enzymes of endophytic fungi associated with this plant were studied. Plant samples, which included leaves, sepals, stems, and seeds, were used. Ninety-five endophytic fungal were isolated (18 from leaves, 22 from sepals, 46 from stems, and nine from seeds), comprising 28 species. The most frequently isolated species were Acremonium curvulum (9.5%), Aspergillus ochraceus (7.37%), Gibberella fujikuroi (10.53%), Myrothecium verrucaria (10.53%) and Trichoderma piluliferum (7.37%). Diversity and species richness were higher in stem tissues, and Sorensen's index of similarity between the tissues was low. Eleven fungi showed antibacterial activity. Aspergillus ochraceus , Gibberella baccata , Penicillium commune , and P. glabrum were those with the greatest antibacterial activity against Staphylococcus aureus and/or Streptococcus pyogenes . Thirteen species showed proteolytic activity, particularly Phoma putaminum . Fourteen species were cellulase positive, particularly the Penicillium species and Myrmecridium schulzeri . All isolates tested were xylanase positive and 10 showed lipolytic activity, especially Penicillium glabrum . It is clear that the endophytic fungi from B. forficata have potential for the production of bioactive compounds and may be a source of new therapeutic agents for the effective treatment of diseases in humans, other animals, and plants. To our knowledge, this is the first study of endophytic fungi from different tissues of B. forficata and their biotechnological potential.

Plant diversity induces a shift of DOC concentration over time - results from long term and large scale experiment

Science.gov (United States)

Lange, Markus; Gleixner, Gerd

2016-04-01

Plant diversity has been demonstrated as a crucial factor for soil organic carbon (SOC) storage. The horizontal SOC formation in turn is strongly impacted by the relative small but consistent flow of dissolved organic carbon (DOC) in soils. In this process, pore water leaches plant material and already stored SOC while simultaneously these leachates are transported downwards. However, there is a big uncertainty about the drivers of DOC flux; in particular about the importance of biological processes. We investigated the impact of plant diversity and other biotic drivers on DOC concentrations and total DOC fluxes (concentration × sampled water amount). In addition, we considered abiotic factors such as weather and soil conditions to assess the relative importance of biotic and abiotic drivers and how their importance changes over time. We used a comprehensive data set, gathered in the frame of the long-term biodiversity experiment "The Jena Experiment". Permanent monitoring started directly after establishment of the field site in 2002 and is still running. This enabled us to trace the impact of plant communities with their increasing establishment over the time on DOC concentration. We found the amount of sampled pore water best explained by rainfall, while it was not related to plant associated variables. Directly after establishing the experimental site, DOC concentrations were highest and then decreasing with time. In the first period of the experiment plant diversity had no or even a slightly negative impact on DOC concentrations. The direction of the plant diversity effect on DOC concentrations changed over time; namely in later phases we observed highest DOC concentrations on plots with high plant diversity. Moreover, DOC concentrations were negatively affected by increased amounts of sampled pore water indicating a dilution effect. Even though this impact was highly significant; its effect size was even less pronounced at later time points. In summary

The Jena Diversity-Dynamic Global Vegetation Model (JeDi-DGVM: a diverse approach to representing terrestrial biogeography and biogeochemistry based on plant functional trade-offs

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R. Pavlick

2013-06-01

Full Text Available Terrestrial biosphere models typically abstract the immense diversity of vegetation forms and functioning into a relatively small set of predefined semi-empirical plant functional types (PFTs. There is growing evidence, however, from the field ecology community as well as from modelling studies that current PFT schemes may not adequately represent the observed variations in plant functional traits and their effect on ecosystem functioning. In this paper, we introduce the Jena Diversity-Dynamic Global Vegetation Model (JeDi-DGVM as a new approach to terrestrial biosphere modelling with a richer representation of functional diversity than traditional modelling approaches based on a small number of fixed PFTs. JeDi-DGVM simulates the performance of a large number of randomly generated plant growth strategies, each defined by a set of 15 trait parameters which characterize various aspects of plant functioning including carbon allocation, ecophysiology and phenology. Each trait parameter is involved in one or more functional trade-offs. These trade-offs ultimately determine whether a strategy is able to survive under the climatic conditions in a given model grid cell and its performance relative to the other strategies. The biogeochemical fluxes and land surface properties of the individual strategies are aggregated to the grid-cell scale using a mass-based weighting scheme. We evaluate the simulated global biogeochemical patterns against a variety of field and satellite-based observations following a protocol established by the Carbon-Land Model Intercomparison Project. The land surface fluxes and vegetation structural properties are reasonably well simulated by JeDi-DGVM, and compare favourably with other state-of-the-art global vegetation models. We also evaluate the simulated patterns of functional diversity and the sensitivity of the JeDi-DGVM modelling approach to the number of sampled strategies. Altogether, the results demonstrate the

Plant cell surface receptor-mediated signaling - a common theme amid diversity.

Science.gov (United States)

He, Yunxia; Zhou, Jinggeng; Shan, Libo; Meng, Xiangzong

2018-01-29

Sessile plants employ a diverse array of plasma membrane-bound receptors to perceive endogenous and exogenous signals for regulation of plant growth, development and immunity. These cell surface receptors include receptor-like kinases (RLKs) and receptor-like proteins (RLPs) that harbor different extracellular domains for perception of distinct ligands. Several RLK and RLP signaling pathways converge at the somatic embryogenesis receptor kinases (SERKs), which function as shared co-receptors. A repertoire of receptor-like cytoplasmic kinases (RLCKs) associate with the receptor complexes to relay intracellular signaling. Downstream of the receptor complexes, mitogen-activated protein kinase (MAPK) cascades are among the key signaling modules at which the signals converge, and these cascades regulate diverse cellular and physiological responses through phosphorylation of different downstream substrates. In this Review, we summarize the emerging common theme that underlies cell surface receptor-mediated signaling pathways in Arabidopsis thaliana : the dynamic association of RLKs and RLPs with specific co-receptors and RLCKs for signal transduction. We further discuss how signaling specificities are maintained through modules at which signals converge, with a focus on SERK-mediated receptor signaling. © 2018. Published by The Company of Biologists Ltd.

Realistic diversity loss and variation in soil depth independently affect community-level plant nitrogen use.

Science.gov (United States)

Selmants, Paul C; Zavaleta, Erika S; Wolf, Amelia A

2014-01-01

Numerous experiments have demonstrated that diverse plant communities use nitrogen (N) more completely and efficiently, with implications for how species conservation efforts might influence N cycling and retention in terrestrial ecosystems. However, most such experiments have randomly manipulated species richness and minimized environmental heterogeneity, two design aspects that may reduce applicability to real ecosystems. Here we present results from an experiment directly comparing how realistic and randomized plant species losses affect plant N use across a gradient of soil depth in a native-dominated serpentine grassland in California. We found that the strength of the species richness effect on plant N use did not increase with soil depth in either the realistic or randomized species loss scenarios, indicating that the increased vertical heterogeneity conferred by deeper soils did not lead to greater complementarity among species in this ecosystem. Realistic species losses significantly reduced plant N uptake and altered N-use efficiency, while randomized species losses had no effect on plant N use. Increasing soil depth positively affected plant N uptake in both loss order scenarios but had a weaker effect on plant N use than did realistic species losses. Our results illustrate that realistic species losses can have functional consequences that differ distinctly from randomized losses, and that species diversity effects can be independent of and outweigh those of environmental heterogeneity on ecosystem functioning. Our findings also support the value of conservation efforts aimed at maintaining biodiversity to help buffer ecosystems against increasing anthropogenic N loading.

Indigenous Knowledge of Dayaks Bakumpai in Barito Kuala District on the Management of Plant Diversity Growing at Streams and Swamps

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Darmono Darmono

2016-06-01

Full Text Available Research aimed at describing profile of indigenous knowldge owned by the Dayaks Bakumpai in Batola district on managing the diversity of herbs growing at the river flow and swamp. Data on herb used by the tribe were grouped based on the etnobotanic study, covering study botany, etnofarmacology, etnoantrophology, etnolinguistik and etnoekologi. We also observed how the Dayaks Bakumpai in Batola district preserve the diversity of plant in around them, and how their efforts in bequeathing or teaching the traditional knowledge of an old breed generation to his young daam in managing diversity of herbs around them.  The study was carried out at three vellages, namely Simpang Arja, Pengulu and Ulu Benteng. The results showed that 52 plant species living along the river and 67 species that live in the marsh. Based on the interview we found that (1 the profile of indigenous knowldge dayaks bakumpai district batola in making use of the diversity of plant in surrounding shown through etno-linguistic, etno-economy, etno-anthropology, etno-farmacology and etno-ecology against 44 tufted herbs of 67 of herbs found, (2 Dayaks Bakumpai in Batola district, to preserve the diversity of plant surrounding them, have done without planting, but by making use of herbs without a certain rule, making use of herbs by a certain rule, making use of herbs let plant grown in nature, and destroy plants that exist or cultivated, and (3 efforts for the inheriting the indigenous knowldge to its young generation have been done by women and quite alarming that many young ages of Dayaks Bakumpai do not know the name of herbs around them.

PATTERNS OF ALLOZYME DIVERSITY IN THE THREATENED PLANT ERIGERON PARISHII (ASTERACEAE). (R826102)

Science.gov (United States)

Thirty-one occurrences of Erigeron parishii, a narrowly endemic plant threatened by mining, were sampled for allozyme diversity. This taxon held considerable genetic variation at the [4 allozyme loci surveyed. Species (e.g., alleles per locus [A] = 4.3 and proportion of polymorph...

Introducing close-range photogrammetry for characterizing forest understory plant diversity and surface fuel structure at fine scales

Science.gov (United States)

Benjamin C. Bright; E. Louise Loudermilk; Scott M. Pokswinski; Andrew T. Hudak; Joseph J. O' Brien

2016-01-01

Methods characterizing fine-scale fuels and plant diversity can advance understanding of plant-fire interactions across scales and help in efforts to monitor important ecosystems such as longleaf pine (Pinus palustris Mill.) forests of the southeastern United States. Here, we evaluate the utility of close-range photogrammetry for measuring fuels and plant...

The impact of forest roads on understory plant diversity in temperate hornbeam-beech forests of Northern Iran.

Science.gov (United States)

Deljouei, Azade; Abdi, Ehsan; Marcantonio, Matteo; Majnounian, Baris; Amici, Valerio; Sohrabi, Hormoz

2017-08-01

Forest roads alter the biotic and abiotic components of ecosystems, modifying temperature, humidity, wind speed, and light availability that, in turn, cause changes in plant community composition and diversity. We aim at investigating and comparing the diversity of herbaceous species along main and secondary forest roads in a temperate-managed hornbeam-beech forest, north of Iran. Sixteen transects along main and secondary forest roads were established (eight transects along main roads and eight along secondary roads). To eliminate the effect of forest type, all transects were located in Carpinetum-Fagetum forests, the dominant forest type in the study area. The total length of each transect was 200 m (100 m toward up slope and 100 m toward down slope), and plots were established along it at different distances from road edge. The diversity of herbaceous plant species was calculated in each plot using Shannon-Wiener index, species richness, and Pielou's index. The results showed that diversity index decreased when distance from road edge increases. This decreasing trend continued up to 60 m from forest road margin, and after this threshold, the index slightly increased. Depending on the type of road (main or secondary) as well as cut or fill slopes, the area showing a statistical different plant composition and diversity measured through Shannon-Wiener, species richness, and Pielou's index is up to 10 m. The length depth of the road edge effect found in main and secondary forest roads was small, but it could have cumulative effects on forest microclimate and forest-associated biota at the island scale. Forest managers should account for the effect of road buildings on plant communities.

Dry coniferous forest restoration and understory plant diversity: The importance of community heterogeneity and the scale of observation

Science.gov (United States)

Erich Kyle Dodson; David W. Peterson

2010-01-01

Maintaining understory plant species diversity is an important management goal as forest restoration and fuel reduction treatments are applied extensively to dry coniferous forests of western North America. However, understory diversity is a function of both local species richness (number of species in a sample unit) and community heterogeneity (beta diversity) at...

Relative role of contemporary environment versus history in shaping diversity patterns of China's woody plants

DEFF Research Database (Denmark)

Wang, Zhiheng; Fang, Jingyun; Tang, Zhiyao

2012-01-01

What determines large-scale patterns of species diversity is a central and controversial topic in biogeography and ecology. In this study, we compared the effects of contemporary environment and historical contingencies on species richness patterns of woody plants in China, using fine-resolution ......-plant species richness across China, while historical contingencies generate regional deviations from this trend. Our findings imply that both species diversity and regional evolutionary and ecological histories should be taken into account for future nature conservation......., and the Tibetan Plateau, perhaps reflecting their special geological features and history. Nevertheless, partial regression indicated that historical effects were less important relative to contemporary environment. In conclusion, contemporary environment (notably climate) determines the general trend in woody...

Predicting plant diversity patterns in Madagascar: understanding the effects of climate and land cover change in a biodiversity hotspot.

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Kerry A Brown

Full Text Available Climate and land cover change are driving a major reorganization of terrestrial biotic communities in tropical ecosystems. In an effort to understand how biodiversity patterns in the tropics will respond to individual and combined effects of these two drivers of environmental change, we use species distribution models (SDMs calibrated for recent climate and land cover variables and projected to future scenarios to predict changes in diversity patterns in Madagascar. We collected occurrence records for 828 plant genera and 2186 plant species. We developed three scenarios, (i.e., climate only, land cover only and combined climate-land cover based on recent and future climate and land cover variables. We used this modelling framework to investigate how the impacts of changes to climate and land cover influenced biodiversity across ecoregions and elevation bands. There were large-scale climate- and land cover-driven changes in plant biodiversity across Madagascar, including both losses and gains in diversity. The sharpest declines in biodiversity were projected for the eastern escarpment and high elevation ecosystems. Sharp declines in diversity were driven by the combined climate-land cover scenarios; however, there were subtle, region-specific differences in model outputs for each scenario, where certain regions experienced relatively higher species loss under climate or land cover only models. We strongly caution that predicted future gains in plant diversity will depend on the development and maintenance of dispersal pathways that connect current and future suitable habitats. The forecast for Madagascar's plant diversity in the face of future environmental change is worrying: regional diversity will continue to decrease in response to the combined effects of climate and land cover change, with habitats such as ericoid thickets and eastern lowland and sub-humid forests particularly vulnerable into the future.

Fatty Acid Diversity is Not Associated with Neutral Genetic Diversity in Native Populations of the Biodiesel Plant Jatropha curcas L.

Science.gov (United States)

Martínez-Díaz, Yesenia; González-Rodríguez, Antonio; Rico-Ponce, Héctor Rómulo; Rocha-Ramírez, Víctor; Ovando-Medina, Isidro; Espinosa-García, Francisco J

2017-01-01

Jatropha curcas L. (Euphorbiaceae) is a shrub native to Mexico and Central America, which produces seeds with a high oil content that can be converted to biodiesel. The genetic diversity of this plant has been widely studied, but it is not known whether the diversity of the seed oil chemical composition correlates with neutral genetic diversity. The total seed oil content, the diversity of profiles of fatty acids and phorbol esters were quantified, also, the genetic diversity obtained from simple sequence repeats was analyzed in native populations of J. curcas in Mexico. Using the fatty acids profiles, a discriminant analysis recognized three groups of individuals according to geographical origin. Bayesian assignment analysis revealed two genetic groups, while the genetic structure of the populations could not be explained by isolation-by-distance. Genetic and fatty acid profile data were not correlated based on Mantel test. Also, phorbol ester content and genetic diversity were not associated. Multiple linear regression analysis showed that total oil content was associated with altitude and seasonality of temperature. The content of unsaturated fatty acids was associated with altitude. Therefore, the cultivation planning of J. curcas should take into account chemical variation related to environmental factors. © 2017 Wiley-VHCA AG, Zurich, Switzerland.

Species diversity of vascular plants in Si Phang-nga National Park, Phangnga Province

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Leeratiwong, C.

2005-07-01

Full Text Available A survey of the vascular plants in Si Phang-nga National Park, Phangnga Province, was conducted from September 2002 to August 2003. Five hundred and forty three species of 287 genera and 111 families were collected. The most diverse family was Rubiaceae, 53 species. Four species of these collected plants are endemic to Thailand, Argostemma lobulatum, Aristolochia helix, Crinum thaianum and Mallotus hymenophyllus and three species, Hedyotis hedyotidea, Lipocarpha microcephala and Pterolobium intergum are newly recorded for southern Thailand.

Historical agriculture alters the effects of fire on understory plant beta diversity

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W. Brett Mattingly; John L. Orrock; Cathy D. Collins; Lars A. Brudvig; Ellen I. Damschen; Joseph W. Veldman; Joan L. Walker

2015-01-01

Land-use legacies are known to shape the diversity and distribution of plant communities, but we lack an understanding of whether historical land use influences community responses to contemporary disturbances. Because human-modified landscapes often bear a history of multiple land-use activities, this contingency can challenge our understanding of land-use impacts on...

Paternal effect of the nuclear formin-like protein MISFIT on Plasmodium development in the mosquito vector.

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Ellen S C Bushell

2009-08-01

Full Text Available Malaria parasites must undergo sexual and sporogonic development in mosquitoes before they can infect their vertebrate hosts. We report the discovery and characterization of MISFIT, the first protein with paternal effect on the development of the rodent malaria parasite Plasmodium berghei in Anopheles mosquitoes. MISFIT is expressed in male gametocytes and localizes to the nuclei of male gametocytes, zygotes and ookinetes. Gene disruption results in mutant ookinetes with reduced genome content, microneme defects and altered transcriptional profiles of putative cell cycle regulators, which yet successfully invade the mosquito midgut. However, developmental arrest ensues during the ookinete transformation to oocysts leading to malaria transmission blockade. Genetic crosses between misfit mutant parasites and parasites that are either male or female gamete deficient reveal a strict requirement for a male misfit allele. MISFIT belongs to the family of formin-like proteins, which are known regulators of the dynamic remodeling of actin and microtubule networks. Our data identify the ookinete-to-oocyst transition as a critical cell cycle checkpoint in Plasmodium development and lead us to hypothesize that MISFIT may be a regulator of cell cycle progression. This study offers a new perspective for understanding the male contribution to malaria parasite development in the mosquito vector.

Fruit of plant diversity at home-garden of Jabon Mekar village, subdistrict of Parung, Bogor regency

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BUDI PRASETYO

2007-01-01

Full Text Available Jabon Mekar village is well-known as the central of fruit supplayer at subdistrict of Parung. Many kinds of fruit were planted and developed in this area. Durian ‘lai-mas’ or durian jabon’s cultivar is the superior product of fruit. However it was estimated as a buffer zone of Jakarta and subject of the urban development. Due to the increasing number of the urbant development in Jakarta, it is concerned that this will have an effect to the function of home-garden.The aim of the research is to study the potential riches and fruit plant diversity at home-garden of community in the village of Jabon Mekar. The methods used for vegetation analysis were the quadratic method. The result of the research found 57 species of fruit plants from 41 genus, 23 families and 30 local cultivars. From all fruit of plants, there are 7 species as the main compositer of the community at home-garden i.e. Musa sp., Durio zibethinus, Nephelium lappaceum, Cocos nucifera, Artocarpus heterophyllus, Sandoricum koetjape, Carica papaya. It was found also that the diversity of plant species at home-garden was at the high level. While all fruit of plant species found a tendency SDR value under 50%, means that none of the plant species dominant toward other fruit of plants species.

Effects of plant diversity, N fertilization, and elevated carbon dioxide on grassland soil N cycling in a long-term experiment.

Science.gov (United States)

Mueller, Kevin E; Hobbie, Sarah E; Tilman, David; Reich, Peter B

2013-04-01

The effects of global environmental changes on soil nitrogen (N) pools and fluxes have consequences for ecosystem functions such as plant productivity and N retention. In a 13-year grassland experiment, we evaluated how elevated atmospheric carbon dioxide (CO2 ), N fertilization, and plant species richness alter soil N cycling. We focused on soil inorganic N pools, including ammonium and nitrate, and two N fluxes, net N mineralization and net nitrification. In contrast with existing hypotheses, such as progressive N limitation, and with observations from other, often shorter, studies, elevated CO2 had relatively static and small, or insignificant, effects on soil inorganic N pools and fluxes. Nitrogen fertilization had inconsistent effects on soil N transformations, but increased soil nitrate and ammonium concentrations. Plant species richness had increasingly positive effects on soil N transformations over time, likely because in diverse subplots the concentrations of N in roots increased over time. Species richness also had increasingly positive effects on concentrations of ammonium in soil, perhaps because more carbon accumulated in soils of diverse subplots, providing exchange sites for ammonium. By contrast, subplots planted with 16 species had lower soil nitrate concentrations than less diverse subplots, especially when fertilized, probably due to greater N uptake capacity of subplots with 16 species. Monocultures of different plant functional types had distinct effects on N transformations and nitrate concentrations, such that not all monocultures differed from diverse subplots in the same manner. The first few years of data would not have adequately forecast the effects of N fertilization and diversity on soil N cycling in later years; therefore, the dearth of long-term manipulations of plant species richness and N inputs is a hindrance to forecasting the state of the soil N cycle and ecosystem functions in extant plant communities. © 2012 Blackwell

Effects of inter-row management intensity on wild bee, plant and soil biota diversity in vineyards

Science.gov (United States)

Kratschmer, Sophie; Pachinger, Bärbel; Winter, Silvia; Zaller, Johann G.; Buchholz, Jacob; Querner, Pascal; Strauß, Peter; Bauer, Thomas; Stiper, Katrin

2016-04-01

Vineyards may provide a range of essential ecosystem services, which interact with a diverse community of above- and belowground organisms. Intensive soil management like frequent tilling has resulted in the degradation of habitat quality with consequences on biodiversity and ecosystem services. This study is part of the European BiodivERsA project "VineDivers - Biodiversity-based ecosystem services in vineyards". We study the effects of different soil management intensities on above- and below-ground biodiversity (plants, insect pollinators, and soil biota), their interactions and the consequences for ecosystem services. We investigated 16 vineyards in Austria assessing the diversity of (1) wild bees using a semi-quantitative transect method, (2) earthworms by hand sorting, (3) Collembola (springtails) via pitfall trapping and soil coring, (4) plants by relevés and (5) litter decomposition (tea bag method). Management intensity differed in tillage frequency from intermediate intensity resulting in temporary vegetation cover to no tillage in permanent vegetation cover systems. First results show opposed relationships between the biodiversity of selected species groups and management intensity. We will discuss possible explanations and evaluate ecological interactions between wild bee, plant and soil biota diversity.

Large-scale patterns of plant diversity and conservation priorities in South East Asia

NARCIS (Netherlands)

Marsh, S.T.; Brummitt, N.A.; Kok, de R.P.J.; Utteridge, T.M.A.

2009-01-01

In the absence of a complete floristic inventory, conservation priorities within South East Asia must often be based on incomplete knowledge or a rough approximation of diversity such as habitat cover. To help overcome this, a database containing distribution data for all 3 523 known flowering plant

Canopy gap edge determination and the importance of gap edges for plant diversity

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D. Salvador-Van Eysenrode

2002-01-01

Full Text Available Canopy gaps, i.e. openings in the forest cover caused by the fall of structural elements, are considered to be important for the maintenance of diversity and for the forest cycle. A gap can be considered as a young forest patch in the forest matrix, composed of interior surrounded by an edge, both enclosed by a perimeter. Much of the attention has been focused on the gap interior. However, at gap edges the spectrum of regeneration opportunities for plants may be larger than in the interior. Although definitions of gap are still discussed, any definition can describe it in an acceptable way, if justified, but defining edges is complicated and appropriate descriptors should be used. A method to determine gap interior and edge, using light as a descriptor, is presented with an example of gaps from a beech forest (Fagus sylvatica in Belgium. Also, the relevance and implications of gap edges for plant diversity and calculation of forest turnover is discussed.

Diversity of Endophytic Fungi from Red Ginger (Zingiber officinale Rosc. Plant and Their Inhibitory Effect to Fusarium oxysporum Plant Pathogenic Fungi

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ROHANI CINTA BADIA GINTING

2013-09-01

Full Text Available Indonesia has been known as a country with high medicinal plant diversity. One of the most common medicinal plant from Indonesia is red ginger (Zingiber officinale Rosc.. Nevertheless, limited studies of endophytic fungi associated with these medicinal plants are hitherto available. The objectives of this research were to study the diversity of endophytic fungi on red ginger and to analyze their potential as a source of antifungal agent. All parts of plant organs such as leaf, rhizome, root, and stem were subjected for isolation. Fungal identification was carried out by using a combination of morphological characteristic and molecular analysis of DNA sequence generated from ITS rDNA region. Thirty endophytic fungi were successfully isolated from leaf, rhizome, root, and stem of red ginger plant. Antagonistic activity was tested against Fusarium oxysporum, a pathogenic fungus on plants, using an antagonistic assay. Based on this approach, the fungi were assigned as Acremonium macroclavatum, Beltraniella sp., Cochliobolus geniculatus and its anamorphic stage Curvularia affinis, Fusarium solani, Glomerella cingulata and its anamorphic stage Colletotrichum gloeosporoides, Lecanicillium kalimantanense, Myrothecium verrucaria, Neonectria punicea, Periconia macrospinosa, Rhizopycnis vagum, and Talaromyces assiutensis. R. vagum was found specifically on root whereas C. affinis, L. kalimantanense, and M. verrucaria were found on stem of red ginger plant. A. macroclavatum was found specifically in red ginger plant's organ which located under the ground, whereas C. affinis was found from shoot or organ which located above the ground. The antagonistic activity of isolated endophytic fungi against F. oxysporum varied with the inhibition value range from 1.4 to 68.8%. C. affinis (JMbt7, F. solani (JMd14, and G. cingulata (JMr2 had significantly high antagonistic activity with the value above 65%; and R. vagum (JMa4 and C. geniculatus (JMbt9 had significantly

Evaluation of genetic diversity in wild populations of Peganum harmala L., a medicinal plant

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Ranya EL-Bakatoushi

2018-06-01

Full Text Available Peganum harmala L. is a perennial herbaceous plant and can be a future drug due to its wide medicinal purposes. Despite its economic importance, the molecular genetics of P. harmal have not yet been studied in detail. Genetic diversity of 12 P. harmala genotypes were investigated by using Inter-Simple Sequence Repeats (ISSR, PCR-RFLP of rDNA-ITS, PCR-SSCP of rDNA-ITS and Simple Sequence Repeat (SSR markers. The level of polymorphism revealed by ITS-SSCP is the lowest, followed by ITS-RFLP then ISSR and the highest polymorphism level was reported for SSR marker. The AMOVA analysis implied that most of the variation occurred within the Populations. A value of inbreeding coefficient Fis estimated by the three co-dominant markers was nearly equal and offer an indication of the partial out-crossing reproductive system of P. harmala. Principal Coordinate Analysis (PCOA plot revealed a clear pattern of clustering based on the locations of collected plants which coincide with the isolation by distance. The study revealed that ITS-SSCP and ISSR markers respectively were more informative than the other used markers in the assessment of genetic diversity of P. harmala. The results reflect the great diversity of P. harmala and data obtained from this study can be used for future collecting missions. Keywords: Peganum harmala, Genetic diversity, ISSR, rDNA-ITS, SSR

Should Exotic Eucalyptus be Planted in Subtropical China: Insights from Understory Plant Diversity in Two Contrasting Eucalyptus Chronosequences.

Science.gov (United States)

Wu, Jianping; Fan, Houbao; Liu, Wenfei; Huang, Guomin; Tang, Jianfu; Zeng, Ruijin; Huang, Jing; Liu, Zhanfeng

2015-11-01

Although Eucalyptus is widely planted in South China, whose effects on native biodiversity are unclear. The objective of this study was to quantify the richness and composition of understory plants in two contrasting Eucalyptus chronosequences in South China. One was in Zhangzhou City with plantation age of 2, 4, and 6 years after clear-cutting Chinese fir forests, while the other was in Heshan City with plantation age of 2, 3, and 24 years that reforested on barren lands. Results showed that the richness of understory plants and functional groups was not significantly altered in the Zhangzhou chronosequence, while increased in the 24-year-old plantations, with a significantly larger proportion of woody plants than the younger plantations for the Heshan chronosequence. Moreover, a higher richness of woody plants accompanied by a lower richness of herbaceous species was detected in the Zhangzhou chronosequence compared with the Heshan one. To balance the need for pulp production and plant diversity conservation, we suggest that intercropping approaches between exotic Eucalyptus plantations and native forests should be considered in the fast rotation Eucalyptus plantations. However, Eucalyptus plantations may be used as pioneer species to sustain ecosystem functioning for the degraded lands.

Soil fungal abundance and diversity: another victim of the invasive plant Centaurea maculosa.

Science.gov (United States)

Broz, Amanda K; Manter, Daniel K; Vivanco, Jorge M

2007-12-01

Interactions between plants and soil microbes are important determinants of both above- and belowground community composition, and ultimately ecosystem function. As exotic plants continue to invade and modify native plant communities, there has been increasing interest in determining the influence of exotic invasives on native soil microbial communities. Here, using highly sensitive molecular techniques, we examine fungal abundance and diversity in the soil surrounding a particularly aggressive invasive plant species in North America, Centaurea maculosa Lam. In mixed stands, we show that this invasive weed can alter the native fungal community composition within its own rhizosphere and that of neighboring native plants. At higher densities, the effect of C. maculosa on native soil fungal communities was even greater. Our results demonstrate that this invasive weed can have significant effects not only on visible aboveground biodiversity but also on the native soil microbial community that extends beyond its rhizosphere.

Plant diversity and regeneration in a disturbed isolated dry Afromontane forest in northern Ethiopia

DEFF Research Database (Denmark)

Aynekulu, Ermias; Aerts, Raf; Denich, Manfred

2016-01-01

We studied the diversity, community composition and natural regeneration of woody species in an isolated but relatively large (> 1,000 ha) dry Afromontane forest in northern Ethiopia to assess its importance for regional forest biodiversity conservation. The principal human-induced disturbance...... in biodiversity through local extinction of indigenous tree species. Despite the problems associated with conserving plant species diversity in small and isolated populations, this relic forest is of particular importance for regional conservation of forest biodiversity, as species with high conservation value...

Plant diversity in hedgerows amidst Atlantic Forest fragments

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Carolina C. C. Oliveira

2015-06-01

Full Text Available Hedgerows are linear structures found in agricultural landscapes that may facilitate dispersal of plants and animals and also serve as habitat. The aim of this study was to investigate the relationships among diversity and ecological traits of woody plants, hedgerow characteristics (size, age, and origin, and the structure of the surrounding Atlantic Forest landscape. Field data were collected from 14 hedgerows, and landscape metrics from 1000-m buffers surrounding hedgerows were recorded from a thematic map. In all sampled hedgerows, arboreal species were predominantly zoochoric and early-succession species, and hedgerow width was an important factor explaining the richness and abundance of this group of species. Connection with forest vegetation did not explain richness and abundance of animal-dispersed species, but richness of non-zoochoric species increased in more connected hedgerows. These results suggest that hedgerows are probably colonized by species arriving from nearby early-succession sites, forest fragment edges, and isolated trees in the matrix. Nonetheless, hedgerows provide resources for frugivorous animals and influence landscape connectivity, highlighting the importance of these elements in the conservation of biodiversity in fragmented and rural landscapes.

Medicinal, Aromatic and Cosmetic (MAC) plants for community health and bio-cultural diversity conservation in Bali, Indonesia

NARCIS (Netherlands)

Leurs, Liesbeth Nathalie

2010-01-01

The general aim of this ethno-botanical study is to document, describe and analyse the Balinese community members’ knowledge, belief and practices with regard to medicinal, aromatic and cosmetic (MAC) plants in relation to community health and bio-cultural diversity conservation of MAC plants. This

A comparative study of AMF diversity in annual and perennial plant species from semiarid gypsum soils.

Science.gov (United States)

Alguacil, M. M.; Torrecillas, E.; Roldán, A.; Díaz, G.; Torres, P.

2012-04-01

The arbuscular mycorrhizal fungi (AMF) communities composition regulate plant interactions and determine the structure of plant communities. In this study we analysed the diversity of AMF in the roots of two perennial gypsophyte plant species, Herniaria fruticosa and Senecio auricula, and an annual herbaceous species, Bromus rubens, growing in a gypsum soil from a semiarid area. The objective was to determine whether perennial and annual host plants support different AMF communities in their roots and whether there are AMF species that might be indicators of specific functional plant roles in these ecosystems. The roots were analysed by nested PCR, cloning, sequencing of the ribosomal DNA small subunit region and phylogenetic analysis. Twenty AMF sequence types, belonging to the Glomus group A, Glomus group B, Diversisporaceae, Acaulosporaceae, Archaeosporaceae and Paraglomeraceae, were identified. Both gypsophyte perennial species had differing compositions of the AMF community and higher diversity when compared with the annual species, showing preferential selection by specific AMF sequences types. B. rubens did not show host specificity, sharing the full composition of its AMF community with both perennial plant species. Seasonal variations in the competitiveness of AM fungi could explain the observed differences in AMF community composition, but this is still a working hypothesis that requires the analysis of further data obtained from a higher number of both annual and perennial plant species in order to be fully tested.

Contrasting land uses in Mediterranean agro-silvo-pastoral systems generated patchy diversity patterns of vascular plants and below-ground microorganisms.

Science.gov (United States)

Bagella, Simonetta; Filigheddu, Rossella; Caria, Maria Carmela; Girlanda, Mariangela; Roggero, Pier Paolo

2014-12-01

The aims of this paper were (i) to define how contrasting land uses affected plant biodiversity in Mediterranean agro-silvo-pastoral-systems across a gradient of disturbance regimes: cork oak forests, secondary grasslands, hay crops, grass covered vineyards, tilled vineyards; (ii) to determine whether these patterns mirrored those of below-ground microorganisms and whether the components of γ-diversity followed a similar model. The disturbance regimes affected plant assemblage composition. Species richness decreased with increasing land use intensity, the Shannon index showed the highest values in grasslands and hay crops. Plant assemblage composition patterns mirrored those of Basidiomycota and Ascomycota. Richness in Basidiomycota, denitrifying bacteria and microbial biomass showed the same trend as that observed for vascular plant richness. The Shannon index pattern of below-ground microorganisms was different from that of plants. The plant γ-diversity component model weakly mirrored those of Ascomycota. Patchy diversity patterns suggest that the maintenance of contrasting land uses associated with different productions typical of agro-silvo-pastoral-systems can guarantee the conservation of biodiversity. Copyright © 2014 Académie des sciences. Published by Elsevier SAS. All rights reserved.

Diversity and regulation of plant Ca2+ pumps: insights from expression in yeast

Science.gov (United States)

Sze, H.; Liang, F.; Hwang, I.; Curran, A. C.; Harper, J. F.; Evans, M. L. (Principal Investigator)

2000-01-01

The spatial and temporal regulation of calcium concentration in plant cells depends on the coordinate activities of channels and active transporters located on different organelles and membranes. Several Ca2+ pumps have been identified and characterized by functional expression of plant genes in a yeast mutant (K616). This expression system has opened the way to a genetic and biochemical characterization of the regulatory and catalytic features of diverse Ca2+ pumps. Plant Ca(2+)-ATPases fall into two major types: AtECA1 represents one of four or more members of the type IIA (ER-type) Ca(2+)-ATPases in Arabidopsis, and AtACA2 is one of seven or more members of the type IIB (PM-type) Ca(2+)-ATPases that are regulated by a novel amino terminal domain. Type IIB pumps are widely distributed on membranes, including the PM (plasma membrane), vacuole, and ER (endoplasmic reticulum). The regulatory domain serves multiple functions, including autoinhibition, calmodulin binding, and sites for modification by phosphorylation. This domain, however, is considerably diverse among several type IIB ATPases, suggesting that the pumps are differentially regulated. Understanding of Ca2+ transporters at the molecular level is providing insights into their roles in signaling networks and in regulating fundamental processes of cell biology.

Effects of plant species identity, diversity and soil fertility on biodegradation of phenanthrene in soil

International Nuclear Information System (INIS)

Oyelami, Ayodeji O.; Okere, Uchechukwu V.; Orwin, Kate H.; De Deyn, Gerlinde B.; Jones, Kevin C.; Semple, Kirk T.

2013-01-01

The work presented in this paper investigated the effects of plant species composition, species diversity and soil fertility on biodegradation of 14 C-phenanthrene in soil. The two soils used were of contrasting fertility, taken from long term unfertilised and fertilised grassland, showing differences in total nitrogen content (%N). Plant communities consisted of six different plant species: two grasses, two forbs, and two legume species, and ranged in species richness from 1 to 6. The degradation of 14 C-phenanthrene was evaluated by measuring indigenous catabolic activity following the addition of the contaminant to soil using respirometry. Soil fertility was a driving factor in all aspects of 14 C-phenanthrene degradation; lag phase, maximum rates and total extents of 14 C-phenanthrene mineralisation were higher in improved soils compared to unimproved soils. Plant identity had a significant effect on the lag phase and extents of mineralisation. Soil fertility was the major influence also on abundance of microbial communities. - Highlights: ► Two grassland soils of contrasting fertility showing differences in total nitrogen content (%N) were used in this study. ► The effects of individual plant species and plant diversity on mineralisation of 14 C-phenanthrene in soil were investigated. ► Soil fertility was the major influence on mineralisation of 14 C-phenanthrene, and abundance of microbial community. ► The presence of a specific plant plays a role in the extent of mineralisation of phenanthrene in soil. - Soil management was the main driver for the mineralisation of 14 C-phenanthrene in soil.

Predicting Vascular Plant Diversity in Anthropogenic Peatlands: Comparison of Modeling Methods with Free Satellite Data

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Ivan Castillo-Riffart

2017-07-01

Full Text Available Peatlands are ecosystems of great relevance, because they have an important number of ecological functions that provide many services to mankind. However, studies focusing on plant diversity, addressed from the remote sensing perspective, are still scarce in these environments. In the present study, predictions of vascular plant richness and diversity were performed in three anthropogenic peatlands on Chiloé Island, Chile, using free satellite data from the sensors OLI, ASTER, and MSI. Also, we compared the suitability of these sensors using two modeling methods: random forest (RF and the generalized linear model (GLM. As predictors for the empirical models, we used the spectral bands, vegetation indices and textural metrics. Variable importance was estimated using recursive feature elimination (RFE. Fourteen out of the 17 predictors chosen by RFE were textural metrics, demonstrating the importance of the spatial context to predict species richness and diversity. Non-significant differences were found between the algorithms; however, the GLM models often showed slightly better results than the RF. Predictions obtained by the different satellite sensors did not show significant differences; nevertheless, the best models were obtained with ASTER (richness: R2 = 0.62 and %RMSE = 17.2, diversity: R2 = 0.71 and %RMSE = 20.2, obtained with RF and GLM respectively, followed by OLI and MSI. Diversity obtained higher accuracies than richness; nonetheless, accurate predictions were achieved for both, demonstrating the potential of free satellite data for the prediction of relevant community characteristics in anthropogenic peatland ecosystems.

Diversity of Endophytic Fungi from Red Ginger (Zingiber officinale Rosc. Plant and Their Inhibitory Effect to Fusarium oxysporum Plant Pathogenic Fungi

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SIHEGIKO KANAYA

2013-09-01

Full Text Available Indonesia has been known as a country with high medicinal plant diversity. One of the most common medicinal plant from Indonesia is red ginger (Zingiber officinale Rosc.. Nevertheless, limited studies of endophytic fungi associated with these medicinal plants are hitherto available. The objectives of this research were to study the diversity of endophytic fungi on red ginger and to analyze their potential as a source of antifungal agent. All parts of plant organs such as leaf, rhizome, root, and stem were subjected for isolation. Fungal identification was carried out by using a combination of morphological characteristic and molecular analysis of DNA sequence generated from ITS rDNA region. Thirty endophytic fungi were successfully isolated from leaf, rhizome, root, and stem of red ginger plant. Antagonistic activity was tested against Fusarium oxysporum, a pathogenic fungus on plants, using an antagonistic assay. Based on this approach, the fungi were assigned as Acremonium macroclavatum, Beltraniella sp., Cochliobolus geniculatus and its anamorphic stage Curvularia affinis, Fusarium solani, Glomerella cingulata, and its anamorphic stage Colletotrichum gloeosporoides, Lecanicillium kalimantanense, Myrothecium verrucaria, Neonectria punicea, Periconia macrospinosa, Rhizopycnis vagum, and Talaromyces assiutensis. R. vagum was found specifically on root whereas C. affinis, L. kalimantanense, and M. verrucaria were found on stem of red ginger plant. A. macroclavatum was found specifically in red ginger plant’s organ which located under the ground, whereas C. affinis was found from shoot or organ which located above the ground. The antagonistic activity of isolated endophytic fungi against F. oxysporum varied with the inhibition value range from 1.4 to 68.8%. C. affinis (JMbt7, F. solani (JMd14, and G. cingulata (JMr2 had significantly high antagonistic activity with the value above 65%; and R. vagum (JMa4 and C. geniculatus (JMbt9 had

Spatial and seasonal diversity of wild food plants in home gardens of Northeast Thailand

NARCIS (Netherlands)

Cruz Garcia, G.S.; Struik, P.C.

2015-01-01

Wild food plants (WFPs) are major components of tropical home gardens, constituting an important resource for poor farmers. The spatial and seasonal diversity of WFPs was analyzed across multi-species spatial configurations occurring within home gardens in a rice farming village in northeast

Response diversity of free-floating plants to nutrient stoichiometry and temperature: growth and resting body formation

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Michael J. McCann

2016-03-01

Full Text Available Free-floating plants, like most groups of aquatic primary producers, can become nuisance vegetation under certain conditions. On the other hand, there is substantial optimism for the applied uses of free-floating plants, such as wastewater treatment, biofuel production, and aquaculture. Therefore, understanding the species-specific responses of floating plants to abiotic conditions will inform both management decisions and the beneficial applications of these plants. I measured the responses of three floating plant species common in the northeast United States (Lemna minor, Spirodela polyrhiza, and Wolffia brasiliensis to nutrient stoichiometry (nitrogen and phosphorus and temperature in the laboratory. I also used survey data to determine the pattern of species richness of floating plants in the field and its relationship with the dominance of this group. Floating plant species exhibited unique responses to nutrient stoichiometry and temperature in the laboratory, especially under low temperatures (18 °C and low nutrient conditions (0.5 mg N L−1, 0.083 mg P L−1. The three species displayed an apparent tradeoff with different strategies of growth or dormancy. In the field, water bodies with three or more species of floating plants were not more frequently dominated by this group. The response diversity observed in the lab may not be associated with the dominance of this group in the field because it is masked by environmental variability, has a weak effect, or is only important during transient circumstances. Future research to develop applied uses of floating plants should examine response diversity across a greater range of species or clones and environmental conditions.

Response diversity of free-floating plants to nutrient stoichiometry and temperature: growth and resting body formation

Science.gov (United States)

2016-01-01

Free-floating plants, like most groups of aquatic primary producers, can become nuisance vegetation under certain conditions. On the other hand, there is substantial optimism for the applied uses of free-floating plants, such as wastewater treatment, biofuel production, and aquaculture. Therefore, understanding the species-specific responses of floating plants to abiotic conditions will inform both management decisions and the beneficial applications of these plants. I measured the responses of three floating plant species common in the northeast United States (Lemna minor, Spirodela polyrhiza, and Wolffia brasiliensis) to nutrient stoichiometry (nitrogen and phosphorus) and temperature in the laboratory. I also used survey data to determine the pattern of species richness of floating plants in the field and its relationship with the dominance of this group. Floating plant species exhibited unique responses to nutrient stoichiometry and temperature in the laboratory, especially under low temperatures (18 °C) and low nutrient conditions (0.5 mg N L−1, 0.083 mg P L−1). The three species displayed an apparent tradeoff with different strategies of growth or dormancy. In the field, water bodies with three or more species of floating plants were not more frequently dominated by this group. The response diversity observed in the lab may not be associated with the dominance of this group in the field because it is masked by environmental variability, has a weak effect, or is only important during transient circumstances. Future research to develop applied uses of floating plants should examine response diversity across a greater range of species or clones and environmental conditions. PMID:26989619

Earthworms counterbalance the negative effects of microorganisms on plant diversity and enhance the tolerance of grasses to nematodes

NARCIS (Netherlands)

Wurst, S.; Allema, B.; Duyts, H.; Van der Putten, W.H.

2008-01-01

Plant community composition is affected by a wide array of soil organisms with diverse feeding modes and functions. Former studies dealt with the high diversity and complexity of soil communities by focusing on particular functional groups in isolation, by grouping soil organisms into body size

Earthworms counterbalance the negative effect of microorganisms on plant diversity and enhance to tolerance of grasses to nematodes

NARCIS (Netherlands)

Wurst, S.; Allema, A.B.; Duyts, H.; Putten, van der W.H.

2008-01-01

Plant community composition is affected by a wide array of soil organisms with diverse feeding modes and functions. Former studies dealt with the high diversity and complexity of soil communities by focusing on particular functional groups in isolation, by grouping soil organisms into body size

Diversity of alkane hydroxylase genes on the rhizoplane of grasses planted in petroleum-contaminated soils

OpenAIRE

Tsuboi, Shun; Yamamura, Shigeki; Nakajima-Kambe, Toshiaki; Iwasaki, Kazuhiro

2015-01-01

The study investigated the diversity and genotypic features of alkane hydroxylase genes on rhizoplanes of grasses planted in artificial petroleum-contaminated soils to acquire new insights into the bacterial communities responsible for petroleum degradation in phytoremediation. Four types of grass (Cynodon dactylon, two phenotypes of Zoysia japonica, and Z. matrella) were used. The concentrations of total petroleum hydrocarbon effectively decreased in the grass-planted systems compared with t...

Diversity patterns amongst herbivorous dinosaurs and plants during the Cretaceous: implications for hypotheses of dinosaur/angiosperm co-evolution.

Science.gov (United States)

Butler, R J; Barrett, P M; Kenrick, P; Penn, M G

2009-03-01

Palaeobiologists frequently attempt to identify examples of co-evolutionary interactions over extended geological timescales. These hypotheses are often intuitively appealing, as co-evolution is so prevalent in extant ecosystems, and are easy to formulate; however, they are much more difficult to test than their modern analogues. Among the more intriguing deep time co-evolutionary scenarios are those that relate changes in Cretaceous dinosaur faunas to the primary radiation of flowering plants. Demonstration of temporal congruence between the diversifications of co-evolving groups is necessary to establish whether co-evolution could have occurred in such cases, but is insufficient to prove whether it actually did take place. Diversity patterns do, however, provide a means for falsifying such hypotheses. We have compiled a new database of Cretaceous dinosaur and plant distributions from information in the primary literature. This is used as the basis for plotting taxonomic diversity and occurrence curves for herbivorous dinosaurs (Sauropodomorpha, Stegosauria, Ankylosauria, Ornithopoda, Ceratopsia, Pachycephalosauria and herbivorous theropods) and major groups of plants (angiosperms, Bennettitales, cycads, cycadophytes, conifers, Filicales and Ginkgoales) that co-occur in dinosaur-bearing formations. Pairwise statistical comparisons were made between various floral and faunal groups to test for any significant similarities in the shapes of their diversity curves through time. We show that, with one possible exception, diversity patterns for major groups of herbivorous dinosaurs are not positively correlated with angiosperm diversity. In other words, at the level of major clades, there is no support for any diffuse co-evolutionary relationship between herbivorous dinosaurs and flowering plants. The diversification of Late Cretaceous pachycephalosaurs (excluding the problematic taxon Stenopelix) shows a positive correlation, but this might be spuriously related to

How do earthworms, soil texture and plant composition affect infiltration along an experimental plant diversity gradient in grassland?

Science.gov (United States)

Fischer, Christine; Roscher, Christiane; Jensen, Britta; Eisenhauer, Nico; Baade, Jussi; Attinger, Sabine; Scheu, Stefan; Weisser, Wolfgang W; Schumacher, Jens; Hildebrandt, Anke

2014-01-01

Infiltration is a key process in determining the water balance, but so far effects of earthworms, soil texture, plant species diversity and their interaction on infiltration capacity have not been studied. We measured infiltration capacity in subplots with ambient and reduced earthworm density nested in plots of different plant species (1, 4, and 16 species) and plant functional group richness and composition (1 to 4 groups; legumes, grasses, small herbs, tall herbs). In summer, earthworm presence significantly increased infiltration, whereas in fall effects of grasses and legumes on infiltration were due to plant-mediated changes in earthworm biomass. Effects of grasses and legumes on infiltration even reversed effects of texture. We propose two pathways: (i) direct, probably by modifying the pore spectrum and (ii) indirect, by enhancing or suppressing earthworm biomass, which in turn influenced infiltration capacity due to change in burrowing activity of earthworms. Overall, the results suggest that spatial and temporal variations in soil hydraulic properties can be explained by biotic processes, especially the presence of certain plant functional groups affecting earthworm biomass, while soil texture had no significant effect. Therefore biotic parameters should be taken into account in hydrological applications.

Reasons for an outstanding plant diversity in the tropical Andes of Southern Ecuador

Directory of Open Access Journals (Sweden)

Michael Richter

2009-06-01

Full Text Available Long-term field studies in the scope of a multidisciplinary project in southern Ecuador revealed extraordinary high species numbers of many organismic groups. This article discusses reasons for the outstanding vascular plant diversity using a hierarchical scale-oriented top-down approach (Grüninger 2005, from the global scale to the local microscale. The global scale explains general (paleo- ecological factors valid for most parts of the humid tropics, addressing various hypotheses and theories, such as the “greater effective evolutionary time”, constant input of “accidentals”, the “seasonal variability hypothesis”, the “intermediate disturbance hypothesis”, and the impact of soil fertility. The macroscale focuses on the Andes in northwestern South America. The tropical Andes are characterised by many taxa of restricted range which is particularly true for the Amotape-Huancabamba region, i.e. the so called Andean Depression, which is effective as discrete phytogeographic transition as well as barrier zone. Interdigitation of northern and southern flora elements, habitat fragmentation, geological and landscape history, and a high speciation rate due to rapid genetic radiation of some taxa contribute to a high degree of diversification. The mesoscale deals with the special environmental features of the eastern mountain range, the Cordillera Real and surrounding areas in southern Ecuador. Various climatic characteristics, the orographic heterogeneity, the geologic and edaphic conditions as well as human impact are the most prominent factors augmenting plant species diversity. On microscale, prevailing regimes of disturbance and environmental stresses, the orographic basement, as well as the general role on the various mountain chains are considered. Here, micro-habitats e.g. niches for epiphytes, effects of micro-relief patterns, and successions after small-sized disturbance events are screened. Direct effects of human impact are

Are post-fire silvicultural treatments a useful tool to fight the climate change threat in terms of plant diversity?

Science.gov (United States)

Hedo de Santiago, Javier; Esteban Lucasr Borja, Manuel; de las Heras, Jorge

2016-04-01

Adaptative forest management demands a huge scientific knowledge about post-fire vegetation dynamics, taking into account the current context of global change. We hypothesized that management practices should be carry out taking into account the climate change effect, to obtain better results in the biodiversity maintenance across time. All of this with respect to diversity and species composition of the post-fire naturally regenerated Aleppo pine forests understory. The study was carried out in two post-fire naturally regenerated Aleppo pine forests in the Southeastern of the Iberian Peninsula, under contrasting climatic conditions: Yeste (Albacete) shows a dry climate and Calasparra (Murcia) shows a semiarid climate. Thinning as post-fire silvicultural treatment was carried out five years after the wildfire event, in the year 1999. An experiment of artificial drought was designed to evacuate 15% of the natural rainfall in both sites, Yeste and Calasparra, to simulate climate change. Taking into account all the variables (site, silvicultural treatment and artificial drought), alpha diversity indices including species richness, Shannon and Simpson diversity indices, and plant cover, were analyzed as a measure of vegetation abundance. The results showed that plant species were affected by thinning, whereas induced drought affected total cover and species, with lower values at Yeste. Significant site variation was also observed in soil properties, species richness and total plant cover, conversely to the plant species diversity indices. We conclude that the plant community shows different responses to a simulated environment of climate change depending on the experimental site.

Hydrological-niche models predict water plant functional group distributions in diverse wetland types.

Science.gov (United States)

Deane, David C; Nicol, Jason M; Gehrig, Susan L; Harding, Claire; Aldridge, Kane T; Goodman, Abigail M; Brookes, Justin D

2017-06-01

Human use of water resources threatens environmental water supplies. If resource managers are to develop policies that avoid unacceptable ecological impacts, some means to predict ecosystem response to changes in water availability is necessary. This is difficult to achieve at spatial scales relevant for water resource management because of the high natural variability in ecosystem hydrology and ecology. Water plant functional groups classify species with similar hydrological niche preferences together, allowing a qualitative means to generalize community responses to changes in hydrology. We tested the potential for functional groups in making quantitative prediction of water plant functional group distributions across diverse wetland types over a large geographical extent. We sampled wetlands covering a broad range of hydrogeomorphic and salinity conditions in South Australia, collecting both hydrological and floristic data from 687 quadrats across 28 wetland hydrological gradients. We built hydrological-niche models for eight water plant functional groups using a range of candidate models combining different surface inundation metrics. We then tested the predictive performance of top-ranked individual and averaged models for each functional group. Cross validation showed that models achieved acceptable predictive performance, with correct classification rates in the range 0.68-0.95. Model predictions can be made at any spatial scale that hydrological data are available and could be implemented in a geographical information system. We show the response of water plant functional groups to inundation is consistent enough across diverse wetland types to quantify the probability of hydrological impacts over regional spatial scales. © 2017 by the Ecological Society of America.

Post-fire salvage logging alters species composition and reduces cover, richness, and diversity in Mediterranean plant communities.

Science.gov (United States)

Leverkus, Alexandro B; Lorite, Juan; Navarro, Francisco B; Sánchez-Cañete, Enrique P; Castro, Jorge

2014-01-15

An intense debate exists on the effects of post-fire salvage logging on plant community regeneration, but scant data are available derived from experimental studies. We analyzed the effects of salvage logging on plant community regeneration in terms of species richness, diversity, cover, and composition by experimentally managing a burnt forest on a Mediterranean mountain (Sierra Nevada, S Spain). In each of three plots located at different elevations, three replicates of three treatments were implemented seven months after the fire, differing in the degree of intervention: "Non-Intervention" (all trees left standing), "Partial Cut plus Lopping" (felling 90% of the trees, cutting the main branches, and leaving all the biomass in situ), and "Salvage Logging" (felling and piling the logs, and masticating the woody debris). Plant composition in each treatment was monitored two years after the fire in linear point transects. Post-fire salvage logging was associated with reduced species richness, Shannon diversity, and total plant cover. Moreover, salvaged sites hosted different species assemblages and 25% lower cover of seeder species (but equal cover of resprouters) compared to the other treatments. Cover of trees and shrubs was also lowest in Salvage Logging, which could suggest a potential slow-down of forest regeneration. Most of these results were consistent among the three plots despite plots hosting different plant communities. Concluding, our study suggests that salvage logging may reduce species richness and diversity, as well as the recruitment of woody species, which could delay the natural regeneration of the ecosystem. Copyright © 2013 Elsevier Ltd. All rights reserved.

Diversity of Antifungal Compounds-Producing Bacillus spp. Isolated from Rhizosphere of Soybean Plant Based on ARDRA and 16S rRNA

Directory of Open Access Journals (Sweden)

ARIS TRI WAHYUDI

2010-09-01

Full Text Available Plant growth promoting rhizobacteria (PGPR play an important role in improvement of seed germination, root development, and water utilization by plants. These rhizobacteria can stimulate plant growth directly by producing growth hormones or indirectly by producing antifungal compounds/antibiotics to suppress phytopathogenic fungi. The objective of this research was to analyze the diversity of 22 antifungal-producing rhizobacteria of Bacillus sp. isolated from rhizosphere of soybean plant based on Amplified rDNA Restriction Analysis (ARDRA and 16S rRNA Sequence. Restriction enzymes in ARDRA analysis, HinfI, HaeIII, and RsaI were used to digest 22 16S rDNA amplified from Bacillus sp. genomes. Based on this analysis, genetic diversity of 22 Bacillus sp. producing antifungal compounds were classified into eight different groups. Moreover, six selected isolates randomly from each ARDRA group that have strong activity to suppress fungal growth were analyzed for their 16S rDNA sequences compared with reference strains. The distributions of these isolates were genetically diverse on several species of Bacillus sp. such as B. subtilis, B. cereus, and B. fusiformis. ARDRA is a reliable technique to analyze genetic diversity of Bacillus sp. community in the rhizosphere.

Phylogenetic diversity of macromycetes and woody plants along an elevational gradient in Eastern Mexico

Science.gov (United States)

Marko Gomez-Hernandez; Guadalupe Williams-Linera; D. Jean Lodge; Roger Guevara; Eduardo Ruiz-Sanchez; Etelvina Gandara

2016-01-01

Phylogenetic information provides insight into the ecological and evolutionary processes that organize species assemblages. We compared patterns of phylogenetic diversity among macromycete and woody plant communities along a steep elevational gradient in eastern Mexico to better understand the evolutionary processes that structure their communities. Macrofungi and...

Effects of plant species identity, diversity and soil fertility on biodegradation of phenanthrene in soil

Energy Technology Data Exchange (ETDEWEB)

Oyelami, Ayodeji O; Okere, Uchechukwu V; Orwin, Kate H; De Deyn, Gerlinde B; Jones, Kevin C [Lancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ (United Kingdom); Semple, Kirk T., E-mail: k.semple@lancaster.ac.uk [Lancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ (United Kingdom)

2013-02-15

The work presented in this paper investigated the effects of plant species composition, species diversity and soil fertility on biodegradation of {sup 14}C-phenanthrene in soil. The two soils used were of contrasting fertility, taken from long term unfertilised and fertilised grassland, showing differences in total nitrogen content (%N). Plant communities consisted of six different plant species: two grasses, two forbs, and two legume species, and ranged in species richness from 1 to 6. The degradation of {sup 14}C-phenanthrene was evaluated by measuring indigenous catabolic activity following the addition of the contaminant to soil using respirometry. Soil fertility was a driving factor in all aspects of {sup 14}C-phenanthrene degradation; lag phase, maximum rates and total extents of {sup 14}C-phenanthrene mineralisation were higher in improved soils compared to unimproved soils. Plant identity had a significant effect on the lag phase and extents of mineralisation. Soil fertility was the major influence also on abundance of microbial communities. - Highlights: Black-Right-Pointing-Pointer Two grassland soils of contrasting fertility showing differences in total nitrogen content (%N) were used in this study. Black-Right-Pointing-Pointer The effects of individual plant species and plant diversity on mineralisation of {sup 14}C-phenanthrene in soil were investigated. Black-Right-Pointing-Pointer Soil fertility was the major influence on mineralisation of {sup 14}C-phenanthrene, and abundance of microbial community. Black-Right-Pointing-Pointer The presence of a specific plant plays a role in the extent of mineralisation of phenanthrene in soil. - Soil management was the main driver for the mineralisation of {sup 14}C-phenanthrene in soil.

Understory plant diversity in riparian alder-conifer stands after logging in southeast Alaska.

Science.gov (United States)

Robert L. Deal

1997-01-01

Stand structure, tree height growth, and understory plant diversity were assessed in five mixed alder-conifer stands after logging in southeast Alaska. Tree species composition ranged from 7- to 91-percent alder, and basal area ranged from 30 to 55 m2/ha. The alder exhibited rapid early height growth, but recent growth has slowed considerably. Some conifers have...

Effects of human proximity and nomadic grazing on the diversity of medicinal plants in temperate hindukush

International Nuclear Information System (INIS)

Adnan, M.; Tariq, A.

2015-01-01

Over exploitation and overgrazing are considered major factors for decreasing plant species diversity. However, we do need some more exploration on the types of anthropogenic disturbances responsible for variation in species decline among different regions. Therefore, the current study was conducted in a temperate Hindukush region of Pakistan with the aim to assess human settlements pressure on the diversity of medicinal plants. Field data was collected from 15 plots, of which 5 plots each were randomly selected at three distant locations in derived woodland forest. Near to community plots were heavily disturbed due to natives proximity, 2 kilometer away plots from the native community were moderately disturbed, while 4 kilometer away plots were under the disturbance regime from temporary settlers (Nomads). We have found all 10 studied medicinal plant species at 2 Km distance followed by 8 species found at 4 km distance. Economically important species such as Bergenia ciliata, Paeonia emodi, Podophyllum emodi, Valeriana jatamansi and Viola canescens were completely absent near village. Similarly, density (8.72 n m-2) and species richness (8.2 n 40 m-2) were found significantly highest at 2 km distance than other locations. Detrended Correspondence Analysis (DCA) showed that among forest stand structural variables, slope was the influencing variable related to the density of only Bergenia ciliata. In conclusions, moderate disturbance is associated to increase in the diversity of medicinal plants, while high anthropogenic pressures the otherwise. Hence, effective management strategies may be adopted to conserve such precious eroding flora. (author)

Layout Guide for Burnt and Un-burnt Tropical Forest: The Diversity of Forest Plants and Insetcs for Sustainable Environmental

Science.gov (United States)

Watiniasih, N. L.; Tambunan, J.; Merdana, I. M.; Antara, I. N. G.

2018-04-01

Forest fire is a common phenomenon in tropical forest likes in Indonesia. Beside the effect of soaring heat and lack of rain during dry season due to the tropical climate, farming system is also reported as one reason of forest fire in Indonesia. People of surrounding areas and neighbouring countries are suffering from the effect of forest fire. Plants and animals are the most suffer from this occurrence that they cannot escape. This study aimed to investigate the effect of previously burnt and un-burnt tropical forest in Borneo Island on the plant and insect diversity of the tropical forest. The result of the study found that the plants in previously burnt forest area was dominated by one species, while higher and more stable plant diversity was found in un-burnt forest. Although the number of individual insects was higher in previously burnt tropical forest, but the insects was more diverse in un-burnt tropical forest. The alteration of environmental conditions in previously burnt and un-burnt forest indicate that the energy held in natural forest support higher number and more stable insects than previously burnt forest.

Importance of genetic diversity assessment in crop plants and its recent advances: an overview of its analytical perspectives.

Science.gov (United States)

Govindaraj, M; Vetriventhan, M; Srinivasan, M

2015-01-01

The importance of plant genetic diversity (PGD) is now being recognized as a specific area since exploding population with urbanization and decreasing cultivable lands are the critical factors contributing to food insecurity in developing world. Agricultural scientists realized that PGD can be captured and stored in the form of plant genetic resources (PGR) such as gene bank, DNA library, and so forth, in the biorepository which preserve genetic material for long period. However, conserved PGR must be utilized for crop improvement in order to meet future global challenges in relation to food and nutritional security. This paper comprehensively reviews four important areas; (i) the significance of plant genetic diversity (PGD) and PGR especially on agriculturally important crops (mostly field crops); (ii) risk associated with narrowing the genetic base of current commercial cultivars and climate change; (iii) analysis of existing PGD analytical methods in pregenomic and genomic era; and (iv) modern tools available for PGD analysis in postgenomic era. This discussion benefits the plant scientist community in order to use the new methods and technology for better and rapid assessment, for utilization of germplasm from gene banks to their applied breeding programs. With the advent of new biotechnological techniques, this process of genetic manipulation is now being accelerated and carried out with more precision (neglecting environmental effects) and fast-track manner than the classical breeding techniques. It is also to note that gene banks look into several issues in order to improve levels of germplasm distribution and its utilization, duplication of plant identity, and access to database, for prebreeding activities. Since plant breeding research and cultivar development are integral components of improving food production, therefore, availability of and access to diverse genetic sources will ensure that the global food production network becomes more sustainable

Importance of Genetic Diversity Assessment in Crop Plants and Its Recent Advances: An Overview of Its Analytical Perspectives

Directory of Open Access Journals (Sweden)

M. Govindaraj

2015-01-01

Full Text Available The importance of plant genetic diversity (PGD is now being recognized as a specific area since exploding population with urbanization and decreasing cultivable lands are the critical factors contributing to food insecurity in developing world. Agricultural scientists realized that PGD can be captured and stored in the form of plant genetic resources (PGR such as gene bank, DNA library, and so forth, in the biorepository which preserve genetic material for long period. However, conserved PGR must be utilized for crop improvement in order to meet future global challenges in relation to food and nutritional security. This paper comprehensively reviews four important areas; (i the significance of plant genetic diversity (PGD and PGR especially on agriculturally important crops (mostly field crops; (ii risk associated with narrowing the genetic base of current commercial cultivars and climate change; (iii analysis of existing PGD analytical methods in pregenomic and genomic era; and (iv modern tools available for PGD analysis in postgenomic era. This discussion benefits the plant scientist community in order to use the new methods and technology for better and rapid assessment, for utilization of germplasm from gene banks to their applied breeding programs. With the advent of new biotechnological techniques, this process of genetic manipulation is now being accelerated and carried out with more precision (neglecting environmental effects and fast-track manner than the classical breeding techniques. It is also to note that gene banks look into several issues in order to improve levels of germplasm distribution and its utilization, duplication of plant identity, and access to database, for prebreeding activities. Since plant breeding research and cultivar development are integral components of improving food production, therefore, availability of and access to diverse genetic sources will ensure that the global food production network becomes more

Plant species diversity affects infiltration capacity in an experimental grassland through changes in soil properties

NARCIS (Netherlands)

Fischer, C.; Tischer, J.; Roscher, C.; Eisenhauer, N.; Ravenek, J.; Gleixner, G.; Attinger, S.; Jensen, B.; Kroon, de H.; Mommer, L.; Scheu, S.; Hildebrandt, A.

2015-01-01

Background and aims Soil hydraulic properties drive water distribution and availability in soil. There exists limited knowledge of how plant species diversity might influence soil hydraulic properties. Methods We quantified the change in infiltration capacity affected by soil structural variables

Can phylogeny predict chemical diversity and potential medicinal activity of plants? A case study of amaryllidaceae

Directory of Open Access Journals (Sweden)

Rønsted Nina

2012-09-01

Full Text Available Abstract Background During evolution, plants and other organisms have developed a diversity of chemical defences, leading to the evolution of various groups of specialized metabolites selected for their endogenous biological function. A correlation between phylogeny and biosynthetic pathways could offer a predictive approach enabling more efficient selection of plants for the development of traditional medicine and lead discovery. However, this relationship has rarely been rigorously tested and the potential predictive power is consequently unknown. Results We produced a phylogenetic hypothesis for the medicinally important plant subfamily Amaryllidoideae (Amaryllidaceae based on parsimony and Bayesian analysis of nuclear, plastid, and mitochondrial DNA sequences of over 100 species. We tested if alkaloid diversity and activity in bioassays related to the central nervous system are significantly correlated with phylogeny and found evidence for a significant phylogenetic signal in these traits, although the effect is not strong. Conclusions Several genera are non-monophyletic emphasizing the importance of using phylogeny for interpretation of character distribution. Alkaloid diversity and in vitro inhibition of acetylcholinesterase (AChE and binding to the serotonin reuptake transporter (SERT are significantly correlated with phylogeny. This has implications for the use of phylogenies to interpret chemical evolution and biosynthetic pathways, to select candidate taxa for lead discovery, and to make recommendations for policies regarding traditional use and conservation priorities.

Plant Growth Promotion Potential Is Equally Represented in Diverse Grapevine Root-Associated Bacterial Communities from Different Biopedoclimatic Environments

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Ramona Marasco

2013-01-01

Full Text Available Plant-associated bacteria provide important services to host plants. Environmental factors such as cultivar type and pedoclimatic conditions contribute to shape their diversity. However, whether these environmental factors may influence the plant growth promoting (PGP potential of the root-associated bacteria is not widely understood. To address this issue, the diversity and PGP potential of the bacterial assemblage associated with the grapevine root system of different cultivars in three Mediterranean environments along a macrotransect identifying an aridity gradient were assessed by culture-dependent and independent approaches. According to 16S rRNA gene PCR-DGGE, the structure of endosphere and rhizosphere bacterial communities was highly diverse (P=0.03 and was associated with a cultivar/latitudinal/climatic effect. Despite being diverse, the bacterial communities associated with Egyptian grapevines shared a higher similarity with the Tunisian grapevines than those cultivated in North Italy. A similar distribution, according to the cultivar/latitude/aridity gradients, was observed for the cultivable bacteria. Many isolates (23% presented in vitro multiple stress resistance capabilities and PGP activities, the most frequent being auxin synthesis (82%, insoluble phosphate solubilisation (61%, and ammonia production (70%. The comparable numbers and types of potential PGP traits among the three different environmental settings indicate a strong functional homeostasis of beneficial bacteria associated with grape root.

Isolation, diversity, and antimicrobial activity of rare actinobacteria from medicinal plants of tropical rain forests in Xishuangbanna, China.

Science.gov (United States)

Qin, Sheng; Li, Jie; Chen, Hua-Hong; Zhao, Guo-Zhen; Zhu, Wen-Yong; Jiang, Cheng-Lin; Xu, Li-Hua; Li, Wen-Jun

2009-10-01

Endophytic actinobacteria are relatively unexplored as potential sources of novel species and novel natural products for medical and commercial exploitation. Xishuangbanna is recognized throughout the world for its diverse flora, especially the rain forest plants, many of which have indigenous pharmaceutical histories. However, little is known about the endophytic actinobacteria of this tropical area. In this work, we studied the diversity of actinobacteria isolated from medicinal plants collected from tropical rain forests in Xishuangbanna. By the use of different selective isolation media and methods, a total of 2,174 actinobacteria were isolated. Forty-six isolates were selected on the basis of their morphologies on different media and were further characterized by 16S rRNA gene sequencing. The results showed an unexpected level of diversity, with 32 different genera. To our knowledge, this is the first report describing the isolation of Saccharopolyspora, Dietzia, Blastococcus, Dactylosporangium, Promicromonospora, Oerskovia, Actinocorallia, and Jiangella species from endophytic environments. At least 19 isolates are considered novel taxa by our current research. In addition, all 46 isolates were tested for antimicrobial activity and were screened for the presence of genes encoding polyketide synthetases and nonribosomal peptide synthetases. The results confirm that the medicinal plants of Xishuangbanna represent an extremely rich reservoir for the isolation of a significant diversity of actinobacteria, including novel species, that are potential sources for the discovery of biologically active compounds.

How do earthworms, soil texture and plant composition affect infiltration along an experimental plant diversity gradient in grassland?

Directory of Open Access Journals (Sweden)

Christine Fischer

Full Text Available BACKGROUND: Infiltration is a key process in determining the water balance, but so far effects of earthworms, soil texture, plant species diversity and their interaction on infiltration capacity have not been studied. METHODOLOGY/PRINCIPAL FINDINGS: We measured infiltration capacity in subplots with ambient and reduced earthworm density nested in plots of different plant species (1, 4, and 16 species and plant functional group richness and composition (1 to 4 groups; legumes, grasses, small herbs, tall herbs. In summer, earthworm presence significantly increased infiltration, whereas in fall effects of grasses and legumes on infiltration were due to plant-mediated changes in earthworm biomass. Effects of grasses and legumes on infiltration even reversed effects of texture. We propose two pathways: (i direct, probably by modifying the pore spectrum and (ii indirect, by enhancing or suppressing earthworm biomass, which in turn influenced infiltration capacity due to change in burrowing activity of earthworms. CONCLUSIONS/SIGNIFICANCE: Overall, the results suggest that spatial and temporal variations in soil hydraulic properties can be explained by biotic processes, especially the presence of certain plant functional groups affecting earthworm biomass, while soil texture had no significant effect. Therefore biotic parameters should be taken into account in hydrological applications.

Studies on ethno medicinal plant diversity in an urban area – a case study

Directory of Open Access Journals (Sweden)

Sudipta Biswas

2016-08-01

Full Text Available The present study deals with the Ethno-medicinal plants used by the local communities in Santragachhi area, under Howrah Municipal Corporation, ward no. 38, District Howrah, West Bengal, India. An ethno medicinal survey was carried out the use of medicinal plants in Santragachi region. The information was gathered from the local community people using an integrated approach botanical collections, group discussion and interview with questionnaire during 2012-2013. Among 50 informants interviewed, 10 were tribal practitioners. A total of 53 genera and 33 families are documented. In most of case, fresh parts of the plants were used for the preparation of medicine. The results further revealed that the natives of this area are not very much practiced in using the medicinal plants in the treatment of human illness. The study area is delimited by number of wetlands and the people collect the aquatic plants by their habitual knowledge as food resources. But due to expansion of city area, road construction causes loss of plant diversity and random exploitation of natural resources many valuable medicinal plants are at the stage of extinction. The present study documented ethno medicinal plants were mostly used for treatment of various diseases.

Easy assessment of diversity in Jatropha curcas L. plants using two single-primer amplification reaction (SPAR) methods

Energy Technology Data Exchange (ETDEWEB)

Ranade, Shirish A; Srivastava, Anuj P; Srivastava, Jyoti; Tuli, Rakesh [PMB Division, National Botanical Research Institute, Rana Pratap Marg, Lucknow 226 001, U.P. (India); Rana, Tikam S [Plant Biodiversity and Conservation Biology Division, National Botanical Research Institute, Rana Pratap Marg, Lucknow 226 001, U.P. (India)

2008-06-15

Jatropha curcas L. (physic nut) has drawn attention in recent years as a source of seed oil that can provide an economically viable substitute for diesel. Very little work on provenance trials and genetic resources of J. curcas L. has been reported so far. Though J. curcas grows widely in India and several collections of the plant are also maintained, pedigree and provenance records are not always available. This article reports our studies on the diversity amongst the accessions of J. curcas L., both amongst already held collections as well as from a few locations in the wild. Two single-primer amplification reaction (SPAR) methods were used for this purpose. The accessions from the North East were most distant from all other accessions in UPGMA analysis. The NBRI, Bhubaneshwar and Lalkuan accessions were more related to each other. The UPGMA tree clearly shows well-separated accession groups: NBRI, Bhubaneshwar, North East, Lalkuan and Outgroup. The study suggests that this relatively recently introduced plant species shows adequate genetic diversity in India and that the SPAR methods are useful for a rapid assessment of the same. The methods provide important tools for analyzing the diversity within the available collections to shortlist the parental lines for adaptability trials and further improvement of Jatropha plants. (author)

Effects of plant species identity, diversity and soil fertility on biodegradation of phenanthrene in soil

NARCIS (Netherlands)

Oyelami, A.O.; Okere, U.V.; Orwin, K.; Deyn, de G.B.; Jones, K.C.; Semple, K.T.

2013-01-01

The work presented in this paper investigated the effects of plant species composition, species diversity and soil fertility on biodegradation of 14C-phenanthrene in soil. The two soils used were of contrasting fertility, taken from long term unfertilised and fertilised grassland, showing

High plant species diversity indirectly mitigates CO 2- and N-induced effects on grasshopper growth

Science.gov (United States)

Strengbom, Joachim; Reich, Peter B.; Ritchie, Mark E.

2008-09-01

We examined how elevated atmospheric [CO 2] and higher rate of nitrogen (N) input may influence grasshopper growth by changing food plant quality and how such effects may be modified by species diversity of the plant community. We reared grasshopper nymphs ( Melanoplus femurrubrum) on Poa pratensis from field-grown monocultures or polycultures (16 species) that were subjected to either ambient or elevated levels of CO 2 and N. Grasshopper growth rate was higher on P. pratensis leaves grown in monocultures than in polycultures, higher on P. pratensis grown under elevated than under ambient [CO 2], and higher on P. pratensis grown under elevated than under ambient [N]. The higher growth rate observed on P. pratensis exposed to elevated [CO 2] was, however, less pronounced for polyculture- than monoculture-grown P. pratensis. Growth rate of the grasshoppers was positively correlated with leaf [N], [C], and concentration of soluble carbohydrates + lipids. Concentration of non-structural carbohydrates + lipids was higher in leaves grown under elevated than under ambient [CO 2], and the difference between P. pratensis grown under ambient and elevated [CO 2] was greater for monoculture- than polyculture-grown P. pratensis. In addition, leaf N concentration was higher in P. pratensis grown in monocultures than in polycultures, suggesting that plant species richness, indirectly, may influence insect performance by changed nutritional value of the plants. Because we found interactive effects between all factors included ([CO 2], [N], and plant species diversity), our results suggest that these parameters may influence plant-insect interactions in a complex way that is not predictable from the sum of single factor manipulations.

Biogeographical Interpretation of Elevational Patterns of Genus Diversity of Seed Plants in Nepal.

Science.gov (United States)

Li, Miao; Feng, Jianmeng

2015-01-01

This study tests if the biogeographical affinities of genera are relevant for explaining elevational plant diversity patterns in Nepal. We used simultaneous autoregressive (SAR) models to investigate the explanatory power of several predictors in explaining the diversity-elevation relationships shown in genera with different biogeographical affinities. Delta akaike information criterion (ΔAIC) was used for multi-model inferences and selections. Our results showed that both the total and tropical genus diversity peaked below the mid-point of the elevational gradient, whereas that of temperate genera had a nearly symmetrical, unimodal relationship with elevation. The proportion of temperate genera increased markedly with elevation, while that of tropical genera declined. Compared to tropical genera, temperate genera had wider elevational ranges and were observed at higher elevations. Water-related variables, rather than mid-domain effects (MDE), were the most significant predictors of elevational patterns of tropical genus diversity. The temperate genus diversity was influenced by energy availability, but only in quadratic terms of the models. Though climatic factors and mid-domain effects jointly explained most of the variation in the diversity of temperate genera with elevation, the former played stronger roles. Total genus diversity was most strongly influenced by climate and the floristic overlap of tropical and temperate floras, while the influences of mid-domain effects were relatively weak. The influences of water-related and energy-related variables may vary with biogeographical affinities. The elevational patterns may be most closely related to climatic factors, while MDE may somewhat modify the patterns. Caution is needed when investigating the causal factors underlying diversity patterns for large taxonomic groups composed of taxa of different biogeographical affinities. Right-skewed diversity-elevation patterns may be produced by the differential

Alien Plant Species in the Agricultural Habitats of Ukraine: Diversity and Risk Assessment

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Burda Raisa

2018-03-01

Full Text Available This paper is the first critical review of the diversity of the Ukrainian adventive flora, which has spread in agricultural habitats in the 21st century. The author’s annotated checklist contains the data on 740 species, subspecies and hybrids from 362 genera and 79 families of non-native weeds. The floristic comparative method was used, and the information was generalised into some categories of five characteristic features: climamorphotype (life form, time and method of introduction, level of naturalisation, and distribution into 22 classes of three habitat types according to European Nature Information System (EUNIS. Two assessments of the ecological risk of alien plants were first conducted in Ukraine according to the European methods: the risk of overcoming natural migration barriers and the risk of their impact on the environment. The exposed impact of invasive alien plants on ecosystems has a convertible character; the obtained information confirms a high level of phytobiotic contamination of agricultural habitats in Ukraine. It is necessary to implement European and national documents regarding the legislative and regulative policy on invasive alien species as one of the threats to biotic diversity.

Prioritizing conservation areas for coastal plant diversity under increasing urbanization.

Science.gov (United States)

Doxa, Aggeliki; Albert, Cécile Hélène; Leriche, Agathe; Saatkamp, Arne

2017-10-01

Coastal urban expansion will continue to drive further biodiversity losses, if conservation targets for coastal ecosystems are not defined and met. Prioritizing areas for future protected area networks is thus an urgent task in such urbanization-threatened ecosystems. Our aim is to quantify past and future losses of coastal vegetation priority areas due to urbanization and assess the effectiveness of the existing protected area network for conservation. We conduct a prioritization analysis, based on 82 coastal plants, including common and IUCN red list species, in a highly-urbanized but biotically diverse region, in South-Eastern France. We evaluate the role of protected areas, by taking into account both strict and multi-use areas. We assess the impact of past and future urbanization on high priority areas, by combining prioritization analyses and urbanization models. We show that half of the highly diverse areas have already been lost due to urbanization. Remaining top priority areas are also among the most exposed to future urban expansion. The effectiveness of the existing protected area (PA) network is only partial. While strict PAs coincide well with top priority areas, they only represent less than one third of priority areas. The effectiveness of multi-use PAs, such as the Natura 2000 network, also remains limited. Our approach highlights the impact of urbanization on plant conservation targets. By modelling urbanization, we manage to identify those areas where protection could be more efficient to limit further losses. We suggest to use our approach in the future to expand the PA network in order to achieve the 2020 Aichi biodiversity targets. Copyright © 2017 Elsevier Ltd. All rights reserved.

Bacterial diversity in rhizosphere soil from Antarctic vascular plants of Admiralty Bay, maritime Antarctica.

Science.gov (United States)

Teixeira, Lia C R S; Peixoto, Raquel S; Cury, Juliano C; Sul, Woo Jun; Pellizari, Vivian H; Tiedje, James; Rosado, Alexandre S

2010-08-01

The Antarctic is a pristine environment that contributes to the maintenance of the global climate equilibrium. The harsh conditions of this habitat are fundamental to selecting those organisms able to survive in such an extreme habitat and able to support the relatively simple ecosystems. The DNA of the microbial community associated with the rhizospheres of Deschampsia antarctica Desv (Poaceae) and Colobanthus quitensis (Kunth) BartI (Caryophyllaceae), the only two native vascular plants that are found in Antarctic ecosystems, was evaluated using a 16S rRNA multiplex 454 pyrosequencing approach. This analysis revealed similar patterns of bacterial diversity between the two plant species from different locations, arguing against the hypothesis that there would be differences between the rhizosphere communities of different plants. Furthermore, the phylum distribution presented a peculiar pattern, with a bacterial community structure different from those reported of many other soils. Firmicutes was the most abundant phylum in almost all the analyzed samples, and there were high levels of anaerobic representatives. Also, some phyla that are dominant in most temperate and tropical soils, such as Acidobacteria, were rarely found in the analyzed samples. Analyzing all the sample libraries together, the predominant genera found were Bifidobacterium (phylum Actinobacteria), Arcobacter (phylum Proteobacteria) and Faecalibacterium (phylum Firmicutes). To the best of our knowledge, this is the first major bacterial sequencing effort of this kind of soil, and it revealed more than expected diversity within these rhizospheres of both maritime Antarctica vascular plants in Admiralty Bay, King George Island, which is part of the South Shetlands archipelago.

Disentangling the trajectories of alpha, beta and gamma plant diversity of North American boreal ecoregions since 15,500 years

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Olivier eBlarquez

2014-04-01

Full Text Available Assessment of biodiversity in a changing world is a key issue and studies on the processes and factors influencing its history at relevant time scales are needed. In this study, we analysed temporal trends of plant diversity using fossil pollen records from the North American boreal forest-taiga biome (NABT. We selected 205 pollen records spanning the last 15,500 years. Diversity was decomposed into α and γ richness, and β diversity, using Shannon entropy indices. We investigated temporal and spatial patterns of β diversity by decomposing it into independent turnover (variation in taxonomic composition due to species replacements and nestedness (variation due to species loss components. The palynological diversity of the NABT biome experienced major rearrangements during the Lateglacial and early Holocene in response to major climatic shifts. The β nestedness likely reflected plant immigration processes and generally peaked before the β turnover value, which mirrors spatial and temporal community sorting related to environmental conditions and specific habitat constraints. Palynological diversity was generally maximal during the Lateglacial and the early Holocene and decreased progressively during the Holocene. These results are discussed according to macro-ecological processes, such as immigration, disturbances and environmental fluctuations, with climate most notably as the main ecological driver at millennial scales.

Inverted formin 2 mutations with variable expression in patients with sporadic and hereditary focal and segmental glomerulosclerosis.

LENUS (Irish Health Repository)

Gbadegesin, Rasheed A

2012-01-01

Focal and segmental glomerulosclerosis (FSGS) is a major cause of end-stage kidney disease. Recent advances in molecular genetics show that defects in the podocyte play a major role in its pathogenesis and mutations in inverted formin 2 (INF2) cause autosomal dominant FSGS. In order to delineate the role of INF2 mutations in familial and sporadic FSGS, we sought to identify variants in a large cohort of patients with FSGS. A secondary objective was to define an approach for genetic screening in families with autosomal dominant disease. A total of 248 individuals were identified with FSGS, of whom 31 had idiopathic disease. The remaining patients clustered into 64 families encompassing 15 from autosomal recessive and 49 from autosomal dominant kindreds. There were missense mutations in 8 of the 49 families with autosomal dominant disease. Three of the detected variants were novel and all mutations were confined to exon 4 of INF2, a regulatory region responsible for 90% of all changes reported in FSGS due to INF2 mutations. Thus, in our series, INF2 mutations were responsible for 16% of all cases of autosomal dominant FSGS, with these mutations clustered in exon 4. Hence, screening for these mutations may represent a rapid, non-invasive and cost-effective method for the diagnosis of autosomal dominant FSGS.

Soil environmental conditions and microbial build-up mediate the effect of plant diversity on soil nitrifying and denitrifying enzyme activities in temperate grasslands.

Directory of Open Access Journals (Sweden)

Xavier Le Roux

Full Text Available Random reductions in plant diversity can affect ecosystem functioning, but it is still unclear which components of plant diversity (species number - namely richness, presence of particular plant functional groups, or particular combinations of these and associated biotic and abiotic drivers explain the observed relationships, particularly for soil processes. We assembled grassland communities including 1 to 16 plant species with a factorial separation of the effects of richness and functional group composition to analyze how plant diversity components influence soil nitrifying and denitrifying enzyme activities (NEA and DEA, respectively, the abundance of nitrifiers (bacterial and archaeal amoA gene number and denitrifiers (nirK, nirS and nosZ gene number, and key soil environmental conditions. Plant diversity effects were largely due to differences in functional group composition between communities of identical richness (number of sown species, though richness also had an effect per se. NEA was positively related to the percentage of legumes in terms of sown species number, the additional effect of richness at any given legume percentage being negative. DEA was higher in plots with legumes, decreased with increasing percentage of grasses, and increased with richness. No correlation was observed between DEA and denitrifier abundance. NEA increased with the abundance of ammonia oxidizing bacteria. The effect of richness on NEA was entirely due to the build-up of nitrifying organisms, while legume effect was partly linked to modified ammonium availability and nitrifier abundance. Richness effect on DEA was entirely due to changes in soil moisture, while the effects of legumes and grasses were partly due to modified nitrate availability, which influenced the specific activity of denitrifiers. These results suggest that plant diversity-induced changes in microbial specific activity are important for facultative activities such as denitrification

Diversity in plant hydraulic traits explains seasonal and inter-annual variations of vegetation dynamics in seasonally dry tropical forests.

Science.gov (United States)

Xu, Xiangtao; Medvigy, David; Powers, Jennifer S; Becknell, Justin M; Guan, Kaiyu

2016-10-01

We assessed whether diversity in plant hydraulic traits can explain the observed diversity in plant responses to water stress in seasonally dry tropical forests (SDTFs). The Ecosystem Demography model 2 (ED2) was updated with a trait-driven mechanistic plant hydraulic module, as well as novel drought-phenology and plant water stress schemes. Four plant functional types were parameterized on the basis of meta-analysis of plant hydraulic traits. Simulations from both the original and the updated ED2 were evaluated against 5 yr of field data from a Costa Rican SDTF site and remote-sensing data over Central America. The updated model generated realistic plant hydraulic dynamics, such as leaf water potential and stem sap flow. Compared with the original ED2, predictions from our novel trait-driven model matched better with observed growth, phenology and their variations among functional groups. Most notably, the original ED2 produced unrealistically small leaf area index (LAI) and underestimated cumulative leaf litter. Both of these biases were corrected by the updated model. The updated model was also better able to simulate spatial patterns of LAI dynamics in Central America. Plant hydraulic traits are intercorrelated in SDTFs. Mechanistic incorporation of plant hydraulic traits is necessary for the simulation of spatiotemporal patterns of vegetation dynamics in SDTFs in vegetation models. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

The influence of gap size on plant species diversity and composition in beech (Fagus orientalis forests, Ramsar, Mazandaran Province, North of Iran

Directory of Open Access Journals (Sweden)

MARZIEH BEGYOM-FAGHIR

2013-10-01

Full Text Available Pourbabaei H, Haddadi-Moghaddam H, Begyom-Faghir M, Abedi T. 2013. The influence of gap size on plant species diversity and composition in beech (Fagus orientalis forests, Ramsar, Mazandaran Province, North of Iran. Biodiversitas 14: 89-94.This study was conducted to investigate the influence of gap size on plant species diversity and composition in beech (Fagus orientalis Lipsky. forests, Ramsar, Mazandaran province. Fifteen gaps in small, medium, and large sizes were randomly selected. Abundance of tree saplings, shrubs and herbaceous species were counted on 4 m2 micro-plots within the gaps. Diversity indices including Shannon-Wiener, Simpson, Mc Arthur's N1, Hill's N2, species richness and Smith-Wilson’s evenness index were computed. The results revealed that there was significant difference among three gap categories in terms of diversity. The highest diversity values of tree and herbaceous species were obtained in the large gaps, while the highest diversity value of shrub species was in the medium gaps. Species composition of small gaps (28 species: 7 trees and 21 herbaceous, medium gaps (37 species: 7 trees, 5 shrubs and 25 herbaceous and large gaps (40 species: 7 trees, 4 shrubs and 29 herbaceous were recognized. Therefore, based on the results of this study, it is recommended that in order to maintain plant diversity and composition up to 400 m2 gap size cloud be used in this forests.

Animal ecosystem engineers modulate the diversity-invasibility relationship.

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Nico Eisenhauer

Full Text Available Invasions of natural communities by non-indigenous species are currently rated as one of the most important global-scale threats to biodiversity. Biodiversity itself is known to reduce invasions and increase stability. Disturbances by ecosystem engineers affect the distribution, establishment, and abundance of species but this has been ignored in studies on diversity-invasibility relationships.We determined natural plant invasion into 46 plots varying in the number of plant species (1, 4, and 16 and plant functional groups (1, 2, 3, and 4 for three years beginning two years after the establishment of the Jena Experiment. We sampled subplots where earthworms were artificially added and others where earthworm abundance was reduced. We also performed a seed-dummy experiment to investigate the role of earthworms as secondary seed dispersers along a plant diversity gradient. Horizontal dispersal and burial of seed dummies were significantly reduced in subplots where earthworms were reduced in abundance. Seed dispersal by earthworms decreased with increasing plant species richness and presence of grasses but increased in presence of small herbs. These results suggest that dense vegetation inhibits the surface activity of earthworms. Further, there was a positive relationship between the number of earthworms and the number and diversity of invasive plants. Hence, earthworms decreased the stability of grassland communities against plant invasion.Invasibility decreased and stability increased with increasing plant diversity and, most remarkably, earthworms modulated the diversity-invasibility relationship. While the impacts of earthworms were unimportant in low diverse (low earthworm densities and high diverse (high floral structural complexity plant communities, earthworms decreased the stability of intermediate diverse plant communities against plant invasion. Overall, the results document that fundamental processes in plant communities like plant seed

Membrane Bioreactor-Based Wastewater Treatment Plant in Saudi Arabia: Reduction of Viral Diversity, Load, and Infectious Capacity

KAUST Repository

Jumat, Muhammad; Hasan, Nur; Subramanian, Poorani; Heberling, Colin; Colwell, Rita; Hong, Pei-Ying

2017-01-01

(AdV) and Enteroviruses (EV) were enumerated using digital polymerase chain reaction (dPCR) and assessed for infectivity using fluorescence-based infection assays. MBR treatment was successful in reducing viral diversity. Plant viruses remained

Plant Community and Nitrogen Deposition as Drivers of Alpha and Beta Diversities of Prokaryotes in Reconstructed Oil Sand Soils and Natural Boreal Forest Soils

Science.gov (United States)

Prescott, Cindy E.; Renaut, Sébastien; Terrat, Yves; Grayston, Sue J.

2017-01-01

ABSTRACT The Athabasca oil sand deposit is one of the largest single oil deposits in the world. Following surface mining, companies are required to restore soil-like profiles that can support the previous land capabilities. The objective of this study was to assess whether the soil prokaryotic alpha diversity (α-diversity) and β-diversity in oil sand soils reconstructed 20 to 30 years previously and planted to one of three vegetation types (coniferous or deciduous trees and grassland) were similar to those found in natural boreal forest soils subject to wildfire disturbance. Prokaryotic α-diversity and β-diversity were assessed using massively parallel sequencing of 16S rRNA genes. The β-diversity, but not the α-diversity, differed between reconstructed and natural soils. Bacteria associated with an oligotrophic lifestyle were more abundant in natural forest soils, whereas bacteria associated with a copiotrophic lifestyle were more abundant in reconstructed soils. Ammonia-oxidizing archaea were most abundant in reconstructed soils planted with grasses. Plant species were the main factor influencing α-diversity in natural and in reconstructed soils. Nitrogen deposition, pH, and plant species were the main factors influencing the β-diversity of the prokaryotic communities in natural and reconstructed soils. The results highlight the importance of nitrogen deposition and aboveground-belowground relationships in shaping soil microbial communities in natural and reconstructed soils. IMPORTANCE Covering over 800 km2, land disturbed by the exploitation of the oil sands in Canada has to be restored. Here, we take advantage of the proximity between these reconstructed ecosystems and the boreal forest surrounding the oil sand mining area to study soil microbial community structure and processes in both natural and nonnatural environments. By identifying key characteristics shaping the structure of soil microbial communities, this study improved our understanding of

Diversity and taxonomy of endophytic xylariaceous fungi from medicinal plants of Dendrobium (Orchidaceae).

Science.gov (United States)

Chen, Juan; Zhang, Li-Chun; Xing, Yong-Mei; Wang, Yun-Qiang; Xing, Xiao-Ke; Zhang, Da-Wei; Liang, Han-Qiao; Guo, Shun-Xing

2013-01-01

Dendrobium spp. are traditional Chinese medicinal plants, and the main effective ingredients (polysaccharides and alkaloids) have pharmacologic effects on gastritis infection, cancer, and anti-aging. Previously, we confirmed endophytic xylariaceous fungi as the dominant fungi in several Dendrobium species of tropical regions from China. In the present study, the diversity, taxonomy, and distribution of culturable endophytic xylariaceous fungi associated with seven medicinal species of Dendrobium (Orchidaceae) were investigated. Among the 961 endophytes newly isolated, 217 xylariaceous fungi (morphotaxa) were identified using morphological and molecular methods. The phylogenetic tree constructed using nuclear ribosomal internal transcribed spacer (ITS), large subunit of ribosomal DNA (LSU), and beta-tubulin sequences divided these anamorphic xylariaceous isolates into at least 18 operational taxonomic units (OTUs). The diversity of the endophytic xylariaceous fungi in these seven Dendrobium species was estimated using Shannon and evenness indices, with the results indicating that the dominant Xylariaceae taxa in each Dendrobium species were greatly different, though common xylariaceous fungi were found in several Dendrobium species. These findings implied that different host plants in the same habitats exhibit a preference and selectivity for their fungal partners. Using culture-dependent approaches, these xylariaceous isolates may be important sources for the future screening of new natural products and drug discovery.

Effects of reindeer density on vascular plant diversity on North Scandinavian mountains

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Johan Olofsson

2005-04-01

Full Text Available We studied the effects of reindeer grazing on species richness and diversity of vascular plants on dolomite influenced low alpine sites in the species rich northern part of the Scandes using 8 sites with different reindeer densities. Two sites were situated inside Malla Strict Nature Reserve, where reindeer grazing have been totally prohibited since 1981, and strongly restricted since 1950s. The six other sites were located in other species rich hotspot sites standardized to be as similar to the dolomite-influenced sites in Malla Strict Reserve as possible but varying in reindeer densities commonly found in the Fennoscandian mountain chain. Each site with a habitat complex especially rich in rare vascular plants (the Dryas heath – low herb meadow complex was systematically sampled in four plots of 2 m x 10 m. The plots were divided to 20 squares of 1 m x 1 m, and complete species lists of vascular plants were compiled for each of the squares. The first DCA (detrended correspondence analysis axis was strongly related to an index of reindeer grazing, indicating that grazing has a strong impact on the composition of the vegetation. None of the characteristics indices of biodiversity (species richness, evenness or Shannon-Wiener H’ was correlated with reindeer density. The local abundances of categories consisting of relatively rare plants (Ca favored plants and red listed plants of Finland showed significant, positive correlation with the intensity of reindeer grazing. We conclude that even though the density of reindeer has no influence on the total species richness or diversity of vascular plants, reindeer may still be important for regional biodiversity as it seems to favour rare and threatened plants. Moreover, our results imply that standard diversity indices may have limited value in the context of conservation biology, as these indices are equally influenced by rarities and by trivial species.Abstract in Swedish / Sammandrag: Vi

Protein change in plant evolution: tracing one thread connecting molecular and phenotypic diversity

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Madelaine eBartlett

2013-10-01

Full Text Available Proteins change over the course of evolutionary time. New protein-coding genes and gene families emerge and diversify, ultimately affecting an organism’s phenotype and interactions with its environment. Here we survey the range of structural protein change observed in plants and review the role these changes have had in the evolution of plant form and function. Verified examples tying evolutionary change in protein structure to phenotypic change remain scarce. We will review the existing examples, as well as draw from investigations into domestication, and quantitative trait locus (QTL cloning studies searching for the molecular underpinnings of natural variation. The evolutionary significance of many cloned QTL has not been assessed, but all the examples identified so far have begun to reveal the extent of protein structural diversity tolerated in natural systems. This molecular (and phenotypic diversity could come to represent part of natural selection’s source material in the adaptive evolution of novel traits. Protein structure and function can change in many distinct ways, but the changes we identified in studies of natural diversity and protein evolution were predicted to fall primarily into one of six categories: altered active and binding sites; hypomorphic and hypermorphic alleles; altered protein-protein interactions; altered domain content; altered protein stability; and altered activity as an activator or repressor. Variability was also observed in the evolutionary scale at which particular changes were observed. Some changes were detected at both micro- and macroevolutionary timescales, while others were observed primarily at deep or shallow phylogenetic levels. This variation might be used to determine the trajectory of future investigations in structural molecular evolution.

Environmental determinants of woody plant diversity at a regional scale in China.

Directory of Open Access Journals (Sweden)

Hong Qian

Full Text Available Understanding what drives the geographic variation of species richness across the globe is a fundamental goal of ecology and biogeography. Environmental variables have been considered as drivers of global diversity patterns but there is no consensus among ecologists on what environmental variables are primary drivers of the geographic variation of species richness. Here, I examine the relationship of woody plant species richness at a regional scale in China with sixteen environmental variables representing energy availability, water availability, energy-water balance, seasonality, and habitat heterogeneity. I found that temperature seasonality is the best predictor of woody species richness in China. Other important environmental variables include annual precipitation, mean temperature of the coldest month, and potential evapotranspiration. The best model explains 85% of the variation in woody plant species richness at the regional scale in China.

Practicality of diversion path analysis

International Nuclear Information System (INIS)

Murphey, W.M.; Schleter, J.C.

1974-07-01

One can define the safeguards system for nuclear material as the set of all protective actions taken to prevent or to deter attempts to divert nuclear material to unauthorized use. Maintenance of effective safeguards requires a program for routine assessment of plant safeguards systems in terms of their capabilities to satisfy safeguards aims. Plant internal control systems provide capabilities for detection of unprevented diversion and can provide assurance that diversion has not occurred. A procedure called Diversion Path Analysis (DPA) enables routine assessment of the capabilities of internal control systems in this regard and identification of safeguards problem areas in a plant. A framework for safeguards system design is also provided which will allow flexibility to accommodate individual plant circumstances while maintaining acceptable diversion detection capability. The steps of the procedure are described and the practicality of the analytical method is shown by referring to a demonstration test for a high throughput process where plant personnel were major participants. The boundary conditions for the demonstration case are given, along with some conclusions about the general procedure. (U.S.)

Flora of IGCAR campus and PFBR site: II plant diversity analysis

International Nuclear Information System (INIS)

Gajendiran, N.; Ragupathy, S.

2003-09-01

This report highlights the level of plant diversity that prevails in IGCAR and PFBR sites. The stress tolerant sandy-shore flora of natural vegetation adorns the Campus. It is bewitchingly blended with horticultural design and sets the backdrop of the nuclear industries- MAPS I and II and the incumbent PFBR. The floristic analysis points out the genetic richness of the campus (over 650 plant species in a narrow strip of ∼2500 acres), which can also serve as genetic reserve for coastal flora. Based on the study, a digitized inventory of plant resources of Kalpakkam is now made available. Taxonomy, distribution, vernacular name, uses, produces, bio-chemical component, ethnobotany, photograph are featured in the database. The survey highlights the potential of mangroves as bio-fence protecting against cyclone and sand and salt laden wind erosion. Such information may also be useful to understand the flora of east coast, in general. Biodiversity information gains importance for its use in caring the ecosystem and for its wise management at every micro-level down to the back yard of individual institution, which is the need of the hour. The sustainable use and preserving the biological resources maximize the net long-term benefits to mankind. (author)

Low genetic diversity despite multiple introductions of the invasive plant species Impatiens glandulifera in Europe.

Science.gov (United States)

Hagenblad, Jenny; Hülskötter, Jennifer; Acharya, Kamal Prasad; Brunet, Jörg; Chabrerie, Olivier; Cousins, Sara A O; Dar, Pervaiz A; Diekmann, Martin; De Frenne, Pieter; Hermy, Martin; Jamoneau, Aurélien; Kolb, Annette; Lemke, Isgard; Plue, Jan; Reshi, Zafar A; Graae, Bente Jessen

2015-08-20

Invasive species can be a major threat to native biodiversity and the number of invasive plant species is increasing across the globe. Population genetic studies of invasive species can provide key insights into their invasion history and ensuing evolution, but also for their control. Here we genetically characterise populations of Impatiens glandulifera, an invasive plant in Europe that can have a major impact on native plant communities. We compared populations from the species' native range in Kashmir, India, to those in its invaded range, along a latitudinal gradient in Europe. For comparison, the results from 39 other studies of genetic diversity in invasive species were collated. Our results suggest that I. glandulifera was established in the wild in Europe at least twice, from an area outside of our Kashmir study area. Our results further revealed that the genetic diversity in invasive populations of I. glandulifera is unusually low compared to native populations, in particular when compared to other invasive species. Genetic drift rather than mutation seems to have played a role in differentiating populations in Europe. We find evidence of limitations to local gene flow after introduction to Europe, but somewhat less restrictions in the native range. I. glandulifera populations with significant inbreeding were only found in the species' native range and invasive species in general showed no increase in inbreeding upon leaving their native ranges. In Europe we detect cases of migration between distantly located populations. Human activities therefore seem to, at least partially, have facilitated not only introductions, but also further spread of I. glandulifera across Europe. Although multiple introductions will facilitate the retention of genetic diversity in invasive ranges, widespread invasive species can remain genetically relatively invariant also after multiple introductions. Phenotypic plasticity may therefore be an important component of the

Genetic diversity and host plant preferences revealed by simple sequence repeat and mitochondrial markers in a population of the arbuscular mycorrhizal fungus Glomus intraradices

NARCIS (Netherlands)

Croll, D.; Wille, L.; Gamper, H.A.; Mathimaran, N.; Lammers, P.J.; Corradi, N.; Sanders, I.R.

2008-01-01

Arbuscular mycorrhizal fungi (AMF) are important symbionts of plants that improve plant nutrient acquisition and promote plant diversity. Although within-species genetic differences among AMF have been shown to differentially affect plant growth, very little is actually known about the degree of

Factors affecting plant diversity during post-fire recovery and succession of mediterranean-climate shrublands in California, USA

Science.gov (United States)

Keeley, J.E.; Fotheringham, C.J.; Baer-Keeley, M.

2005-01-01

Plant community diversity, measured as species richness, is typically highest in the early post-fire years in California shrublands. However, this generalization is overly simplistic and the present study demonstrates that diversity is determined by a complex of temporal and spatial effects. Ninety sites distributed across southern California were studied for 5 years after a series of fires. Characteristics of the disturbance event, in this case fire severity, can alter post-fire diversity, both decreasing and increasing diversity, depending on life form. Spatial variability in resource availability is an important factor explaining patterns of diversity, and there is a complex interaction between landscape features and life form. Temporal variability in resource availability affects diversity, and the diversity peak in the immediate post-fire year (or two) appears to be driven by factors different from subsequent diversity peaks. Early post-fire diversity is influenced by life-history specialization, illustrated by species that spend the bulk of their life cycle as a dormant seed bank, which is then triggered to germinate by fire. Resource fluctuations, precipitation in particular, may be associated with subsequent post-fire diversity peaks. These later peaks in diversity comprise a flora that is compositionally different from the immediate post-fire flora, and their presence may be due to mass effects from population expansion of local populations in adjacent burned areas. ?? 2005 Blackwell Publishing Ltd.

An endoplasmic reticulum-localized Coffea arabica BURP domain-containing protein affects the response of transgenic Arabidopsis plants to diverse abiotic stresses.

Science.gov (United States)

Dinh, Sy Nguyen; Kang, Hunseung

2017-11-01

The Coffea arabica BURP domain-containing gene plays an important role in the response of transgenic Arabidopsis plants to abiotic stresses via regulating the level of diverse proteins. Although the functions of plant-specific BURP domain-containing proteins (BDP) have been determined for a few plants, their roles in the growth, development, and stress responses of most plant species, including coffee plant (Coffea arabica), are largely unknown. In this study, the function of a C. arabica BDP, designated CaBDP1, was investigated in transgenic Arabidopsis plants. The expression of CaBDP1 was highly modulated in coffee plants subjected to drought, cold, salt, or ABA. Confocal analysis of CaBDP1-GFP fusion proteins revealed that CaBDP1 is localized in the endoplasmic reticulum. The ectopic expression of CaBDP1 in Arabidopsis resulted in delayed germination of the transgenic plants under abiotic stress and in the presence of ABA. Cotyledon greening and seedling growth of the transgenic plants were inhibited in the presence of ABA due to the upregulation of ABA signaling-related genes like ABI3, ABI4, and ABI5. Proteome analysis revealed that the levels of several proteins are modulated in CaBDP1-expressing transgenic plants. The results of this study underscore the importance of BURP domain proteins in plant responses to diverse abiotic stresses.

Diversity of Endophytic Actinomycetes from Wheat and its Potential as Plant Growth Promoting and Biocontrol Agents

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M. Gangwar

2012-01-01

Full Text Available A total of 35 endophytic actinomycetes strains was isolated from the roots, stems and leaves tissues of healthy wheat plants and identified as Streptomyces sp. (24, Actinopolyspora sp. (3, Nocardia sp. (4, Saccharopolyspora sp. (2 Pseudonocardia (1 and Micromonospora sp. (1. Seventeen endophytic actinomycetes isolate showed abilities to solubilize phosphate and produce IAA in the range of 5 to 42mg/100ml and 18-42µg/ml respectively. Nineteen isolates produced catechol-type of siderophore ranging between 1.3-20.32µg/ml. Also, hydroxamate-type siderophore produced by 9 isolates in the range of 13.33-50.66µg/ml. Maximum catechol-type of siderophore production was observed in Streptomyces roseosporus W9 (20.32µg/ml which was also displaying maximum antagonistic activity against ten different pathogenic fungi. The results indicated that internal tissues of healthy wheat plants exhibited endophytic actinomycetes diversity not only in terms of different types of isolates but also in terms of functional diversity.

Are Plant Species’ Richness and Diversity Influenced by Fragmentation at a Microscale?

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Jesús Aguirre-Gutiérrez

2014-01-01

Full Text Available It is argued that forest fragmentation has negative effects on biodiversity at the short and long term; however, these effects might be dependent on the specific vegetation of the study area and its intrinsic characteristics. The processes leading to fragmentation are very diverse and many of them have anthropogenic causes as logging actions and clearings for agricultural fields. Furthermore, it is thought that scale plays an important role in the expected effects of fragmentation on biodiversity. In this study the effect of forest fragmentation and its impact on the woody plants species, richness and diversity are analysed considering three vegetation types in a poorly studied and difficult access biodiversity hotspot in northern Mexico. The results show that the effects of fragmentation are dependent on the vegetation type and that these are not strongly related to the species richness, and diversity in a microscale (100 m2. Fragmentation effects on biodiversity must be analysed in a broad scale, considering the fragment as a whole. Furthermore, conservation priority should be given to the larger fragments, which could potentially maintain a higher portion of biodiversity. Management should also be focused on increasing the connectivity between these big and medium size forest patches.

Prosopis laevigata and Mimosa biuncifera (Leguminosae, jointly influence plant diversity and soil fertility of a Mexican semiarid ecosystem

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Rosalva García-Sánchez

2012-03-01

Full Text Available Prosopis laevigata and Mimosa biuncifera are frequently found in arid and semiarid shrublands, but scarce information is available about their influence on plant community structure and soil fertility. We compared plant community structure, diversity and soil nutrients of three semiarid shrubland sites located in Mezquital Valley, Mexico. These sites differ in their dominant species: Site 1 (Bingu P. laevigata, Site 2 (González M. biuncifera, and Site 3 (Rincón with the presence of both legumes. The results showed that the plant community with P. laevigata and M. biuncifera (Site 3 had more cover, taller plants and higher plant diversity than sites with only one legume (Site 1 and Site 2. Soil organic matter (SOM, soil organic carbon (SOC, total nitrogen (TN, phosphorus-Olsen (P and C mineralization were higher in the soil under the canopy of both legumes than in bare soil. In contrast, soil cation concentrations were lower under the canopy of P. laevigata, but not for M. biuncifera. In addition, the density of arbuscular mycorrhizal fungi spores was higher within the soil under the canopy of M. biuncifera than in the soil under the canopy of P. laevigata. Thus, resource islands (RI created by P. laevigata increased the amounts of SOC, TN and P when compared with the RI of M. biuncifera. This study provided evidences about the importance of species identity in order to expand the niche availability for the establishment of other plants, and highlights that P. laevigata and M. biuncifera jointly influencing plant colonization within semiarid ecosystems

The genome of the endophytic bacterium H. frisingense GSF30T identifies diverse strategies in the Herbaspirillum genus to interact with plants

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Daniel eStraub

2013-06-01

Full Text Available The diazotrophic, bacterial endophyte Herbaspirillum frisingense GSF30T has been identified in biomass grasses grown in temperate climate, including the highly nitrogen-efficient grass Miscanthus. Its genome was annotated and compared with related Herbaspirillum species from diverse habitats, including H. seropedicae, and further well-characterized endophytes. The analysis revealed that Herbaspirillum frisingense lacks a type III secretion system that is present in some related Herbaspirillum grass endophytes. Together with the lack of components of the type II secretion system, the genomic inventory indicates distinct interaction scenarios of endophytic Herbaspirillum strains with plants. Differences in respiration, carbon, nitrogen and cell wall metabolism among Herbaspirillum isolates partially correlate with their different habitats. Herbaspirillum frisingense is closely related to strains isolated from the rhizosphere of phragmites and from well water, but these lack nitrogen fixation and metabolism genes. Within grass endophytes, the high diversity in their genomic inventory suggests that even individual plant species provide distinct, highly diverse metabolic niches for successful endophyte-plant associations.

The genome of the endophytic bacterium H. frisingense GSF30(T) identifies diverse strategies in the Herbaspirillum genus to interact with plants.

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Straub, Daniel; Rothballer, Michael; Hartmann, Anton; Ludewig, Uwe

2013-01-01

The diazotrophic, bacterial endophyte Herbaspirillum frisingense GSF30(T) has been identified in biomass grasses grown in temperate climate, including the highly nitrogen-efficient grass Miscanthus. Its genome was annotated and compared with related Herbaspirillum species from diverse habitats, including H. seropedicae, and further well-characterized endophytes. The analysis revealed that Herbaspirillum frisingense lacks a type III secretion system that is present in some related Herbaspirillum grass endophytes. Together with the lack of components of the type II secretion system, the genomic inventory indicates distinct interaction scenarios of endophytic Herbaspirillum strains with plants. Differences in respiration, carbon, nitrogen and cell wall metabolism among Herbaspirillum isolates partially correlate with their different habitats. Herbaspirillum frisingense is closely related to strains isolated from the rhizosphere of phragmites and from well water, but these lack nitrogen fixation and metabolism genes. Within grass endophytes, the high diversity in their genomic inventory suggests that even individual plant species provide distinct, highly diverse metabolic niches for successful endophyte-plant associations.

The genome of the endophytic bacterium H. frisingense GSF30T identifies diverse strategies in the Herbaspirillum genus to interact with plants

Science.gov (United States)

Straub, Daniel; Rothballer, Michael; Hartmann, Anton; Ludewig, Uwe

2013-01-01

The diazotrophic, bacterial endophyte Herbaspirillum frisingense GSF30T has been identified in biomass grasses grown in temperate climate, including the highly nitrogen-efficient grass Miscanthus. Its genome was annotated and compared with related Herbaspirillum species from diverse habitats, including H. seropedicae, and further well-characterized endophytes. The analysis revealed that Herbaspirillum frisingense lacks a type III secretion system that is present in some related Herbaspirillum grass endophytes. Together with the lack of components of the type II secretion system, the genomic inventory indicates distinct interaction scenarios of endophytic Herbaspirillum strains with plants. Differences in respiration, carbon, nitrogen and cell wall metabolism among Herbaspirillum isolates partially correlate with their different habitats. Herbaspirillum frisingense is closely related to strains isolated from the rhizosphere of phragmites and from well water, but these lack nitrogen fixation and metabolism genes. Within grass endophytes, the high diversity in their genomic inventory suggests that even individual plant species provide distinct, highly diverse metabolic niches for successful endophyte-plant associations. PMID:23825472

Plant diversity increases with the strength of negative density dependence at the global scale

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LaManna, Joseph A.; Mangan, Scott A.; Alonso, Alfonso; Bourg, Norman; Brockelman, Warren Y.; Bunyavejchewin, Sarayudh; Chang, Li-Wan; Chiang, Jyh-Min; Chuyong, George B.; Clay, Keith; Condit, Richard; Cordell, Susan; Davies, Stuart J.; Furniss, Tucker J.; Giardina, Christian P.; Gunatilleke, I.A.U. Nimal; Gunatilleke, C.V. Savitri; He, Fangliang; Howe, Robert W.; Hubbell, Stephen P.; Hsieh, Chang-Fu; Inman-Narahari, Faith M.; Janik, David; Johnson, Daniel J.; Kenfack, David; Korte, Lisa; Kral, Kamil; Larson, Andrew J.; Lutz, James A.; McMahon, Sean M.; McShea, William J.; Memiaghe, Herve R.; Nathalang, Anuttara; Novotny, Vojtech; Ong, Perry S.; Orwig, David A.; Ostertag, Rebecca; Parker, Geoffrey G.; Phillips, Richard P.; Sack, Lawren; Sun, I-Fang; Tello, J. Sebastian; Thomas, Duncan W.; Turner, Benjamin L.; Vela Diaz, Dilys M.; Vrska, Tomas; Weiblen, George D.; Wolf, Amy; Yap, Sandra; Myers, Jonathan A.

2017-01-01

Theory predicts that higher biodiversity in the tropics is maintained by specialized interactions among plants and their natural enemies that result in conspecific negative density dependence (CNDD). By using more than 3000 species and nearly 2.4 million trees across 24 forest plots worldwide, we show that global patterns in tree species diversity reflect not only stronger CNDD at tropical versus temperate latitudes but also a latitudinal shift in the relationship between CNDD and species abundance. CNDD was stronger for rare species at tropical versus temperate latitudes, potentially causing the persistence of greater numbers of rare species in the tropics. Our study reveals fundamental differences in the nature of local-scale biotic interactions that contribute to the maintenance of species diversity across temperate and tropical communities.

Ignored fungal community in activated sludge wastewater treatment plants: diversity and altitudinal characteristics.

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Niu, Lihua; Li, Yi; Xu, Lingling; Wang, Peifang; Zhang, Wenlong; Wang, Chao; Cai, Wei; Wang, Linqiong

2017-02-01

Fungi are important contributors to the various functions of activated sludge wastewater treatment plants (WWTPs); however, the diversity and geographic characteristics of fungal populations have remained vastly unexplored. Here, quantitative polymerase chain reaction and 454 pyrosequencing were combined to investigate the abundance and diversity of the activated sludge fungal communities from 18 full-scale municipal WWTPs in China. Phylogenetic taxonomy revealed that the members of the fungal communities were assigned to 7 phyla and 195 genera. Ascomycota and Basidiomycota were the most abundant phyla, dominated by Pluteus, Wickerhamiella, and Penicillium. Twenty-three fungal genera, accounting for 50.1 % of the total reads, were shared by 18 WWTPs and constituted a core fungal community. The fungal communities presented similar community diversity but different community structures across the WWTPs. Significant distance decay relationships were observed for the dissimilarity in fungal community structure and altitudinal distance between WWTPs. Additionally, the community evenness increased from 0.25 to 0.7 as the altitude increased. Dissolved oxygen and the C/N ratio were determined to be the most dominant contributors to the variation in fungal community structure via redundancy analysis. The observed data demonstrated the diverse occurrence of fungal species and gave a marked view of fungal community characteristics based on the previously unexplored fungal communities in activated sludge WWTPs.

Linking plant hydraulics and beta diversity in tropical forests

Energy Technology Data Exchange (ETDEWEB)

Christoffersen, Bradley [Earth and Environmental Sciences, Los Alamos National Laboratory, Los Alamos NM 87545 USA; Meir, Patrick [School of GeoSciences, University of Edinburgh, Edinburgh EH9 3FE UK; Research School of Biology, Australian National University, Canberra ACT 2601 Australia; McDowell, Nate G. [Pacific Northwest National Laboratory, Richland WA 99352 USA

2017-05-31

In tropical forests, studies of xylem traits governing water transport through plants, or ‘hydraulic architecture’ (Tyree et al., 1991), and changes in species composition across environmental gradients, or ‘beta diversity’ (Gentry, 1988; Ackerly & Cornwell, 2007), have progressedmostly in parallel until recently (Hao et al., 2008; Bartlett et al., 2016). In this issue of New Phytologist, Cosme et al. (pp. 000–5 000) present a timely contribution to the intersection of plant hydraulic architecture (HA) with trait-based community ecology. Building on previous biogeographical work that demonstrated shifts in species composition (beta diversity) across a gradient from valleys to plateaus in central Amazonia (Schietti et al., 2014), Cosme et al. explore how variation in HA might underpin this sorting, sampling pairs of congeneric species restrictedmostly to either plateau or valley habitats. Valley species had significantly lower wood density and higher hydraulically-weighted vessel diameter and vessel area. By contrast, trees with some of the largest hydraulically-weighted vessel diameters existed in tall, deciduous plateau species, while the leaf: sapwood area ratio decreased with height in valley but not plateau species. These intriguing results suggest that species differentiation in water transport traits mediate edaphic filtering along the valley-toplateau gradient, in contrast to previous work where wood mechanical support mediated valley-to-plateau environmental filtering (Fortunel et al., 2014).

A Preliminary Study on Diverse Plant Uses of Rukai Tribe in Wutai District of Pingtung County, Southern Taiwan

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Sheng-Zehn Yang

2011-03-01

Full Text Available The Rukai tribe is concentrated in the Wutai Township of Pingtung County, southern Taiwan. From 2000 to 2003 people of the Rukai in Wutai were interviewed on the traditional uses of plants and samples of such plant species were collected in an effort to remedy the situation of insufficient quantitative data on Taiwan’s ethnobotany. The number of citations per species and total number of citations were recorded in order to calculate diversity indices such as Shannon-Wiener index, evenness index, and rarefaction curves. Thirty-seven interviewed informants cited 245 plant species, which were then classified into thirteen types of usages, such as food, medicine, tools, and decoration. Among the 245 plant species, 93 species are used as food, 73 as tools, 52 for decoration and 45 for medicinal purposes. Informants described six types of usages for Hibiscus taiwanensis Hu and Vitex negundo L. Sambucus chinensis Nakai and Chamaesyce hirta (L. Millsp. had the highest number of citations for medicinal usages. The Shannon-Wiener index was 2.27. The evenness values was 0.95, showing that the Wutai Rukai people had a low dominance concerning the uses of a few species and an equitability of plant uses. The diversity indices and the Coleman rarefaction curves of the Taiwan Rukai tribe could be available to compare ethnobotanical data with different areas.

Plant Community and Nitrogen Deposition as Drivers of Alpha and Beta Diversities of Prokaryotes in Reconstructed Oil Sand Soils and Natural Boreal Forest Soils.

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Masse, Jacynthe; Prescott, Cindy E; Renaut, Sébastien; Terrat, Yves; Grayston, Sue J

2017-05-01

The Athabasca oil sand deposit is one of the largest single oil deposits in the world. Following surface mining, companies are required to restore soil-like profiles that can support the previous land capabilities. The objective of this study was to assess whether the soil prokaryotic alpha diversity (α-diversity) and β-diversity in oil sand soils reconstructed 20 to 30 years previously and planted to one of three vegetation types (coniferous or deciduous trees and grassland) were similar to those found in natural boreal forest soils subject to wildfire disturbance. Prokaryotic α-diversity and β-diversity were assessed using massively parallel sequencing of 16S rRNA genes. The β-diversity, but not the α-diversity, differed between reconstructed and natural soils. Bacteria associated with an oligotrophic lifestyle were more abundant in natural forest soils, whereas bacteria associated with a copiotrophic lifestyle were more abundant in reconstructed soils. Ammonia-oxidizing archaea were most abundant in reconstructed soils planted with grasses. Plant species were the main factor influencing α-diversity in natural and in reconstructed soils. Nitrogen deposition, pH, and plant species were the main factors influencing the β-diversity of the prokaryotic communities in natural and reconstructed soils. The results highlight the importance of nitrogen deposition and aboveground-belowground relationships in shaping soil microbial communities in natural and reconstructed soils. IMPORTANCE Covering over 800 km 2 , land disturbed by the exploitation of the oil sands in Canada has to be restored. Here, we take advantage of the proximity between these reconstructed ecosystems and the boreal forest surrounding the oil sand mining area to study soil microbial community structure and processes in both natural and nonnatural environments. By identifying key characteristics shaping the structure of soil microbial communities, this study improved our understanding of how

Challenges in estimating past plant diversity from fossil pollen data: statistical assessment, problems, and possible solutions.

NARCIS (Netherlands)

Weng, C.; Hooghiemstra, H.; Duivenvoorden, J.F.

2006-01-01

Fossil pollen data from sediment cores may be used as a measure for past plant diversity. According to the theory of probability, palynological richness is positively related to the pollen count. In a low pollen count, only common taxa are detected, whereas rare taxa are only detected by chance. The

Positive plant diversity-soil stability relationships are mediated through roots in the Songnen Grassland: Chronosequence evidence

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Liang-Jun Hu; Ping Li; Qinfeng Guo

2013-01-01

Living plant diversity (excluding the litter issue) may affect below-ground properties and processes, which is critical to obtaining an integrated biodiversity-ecosystem functioning theory. However, related patterns and underlying mechanisms have rarely been examined, especially lacking long-term evidence. We conducted a factorial crossed sample survey to examine the...

Effects of uranium on soil microbial biomass carbon, enzymes, plant biomass and microbial diversity in yellow soils

International Nuclear Information System (INIS)

Yan, X.; Zhang, Y.; Luo, X.; Yu, L.

2016-01-01

We conducted an experiment to investigate the effects of uranium (U) on soil microbial biomass carbon (MBC), enzymes, plant biomass and microbial diversity in yellow soils under three concentrations: 0 mg kg"-"1 (T1, control), 30 mg kg"-"1 (T2) and 60 mg kg"-"1 (T3). Under each treatment, elevated U did not reduce soil MBC or plant biomass, but inhibited the activity of the soil enzymes urease (UR), dehydrogenase (DH) and phosphatase (PHO). The microbial diversity was different, with eight dominant phyla in T1 and six in T2 and T3. Furthermore, Proteobacteria and material X were both detected in each treatment site (T1, T2 and T3). Pseudomonas sp. was the dominant strain, followed by Acidiphilium sp. This initial study provided valuable data for further research toward a better understanding of U contamination in yellow soils in China. (authors)

Biogeographical diversity of plant associated microbes in arcto-alpine plants

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Kumar, Manoj Gopala Krishnan

2016-01-01

Terrestrial plants and microbes have co-evolved since the emergence of the former on Earth. Associations with microorganisms can be either beneficial or detrimental for plants. Microbes can be found in the soil surrounding the plant roots, but also in all plant tissues, including seeds. In

Climate interacts with soil to produce beta diversity in Californian plant communities.

Science.gov (United States)

Fernandez-Going, B M; Harrison, S P; Anacker, B L; Safford, H D

2013-09-01

Spatially distinct communities can arise through interactions and feedbacks between abiotic and biotic factors. We suggest that, for plants, patches of infertile soils such as serpentine may support more distinct communities from those in the surrounding non-serpentine matrix in regions where the climate is more productive (i.e., warmer and/or wetter). Where both soil fertility and climatic productivity are high, communities may be dominated by plants with fast-growing functional traits, whereas where either soils or climate impose low productivity, species with stress-tolerant functional traits may predominate. As a result, both species and functional composition may show higher dissimilarity between patch and matrix in productive climates. This pattern may be reinforced by positive feedbacks, in which higher plant growth under favorable climate and soil conditions leads to higher soil fertility, further enhancing plant growth. For 96 pairs of sites across a 200-km latitudinal gradient in California, we found that the species and functional dissimilarities between communities on infertile serpentine and fertile non-serpentine soils were higher in more productive (wetter) regions. Woody species had more stress-tolerant functional traits on serpentine than non-serpentine soil, and as rainfall increased, woody species functional composition changed toward fast-growing traits on non-serpentine, but not on serpentine soils. Soil organic matter increased with rainfall, but only on non-serpentine soils, and the difference in organic matter between soils was positively correlated with plant community dissimilarity. These results illustrate a novel mechanism wherein climatic productivity is associated with higher species, functional, and landscape-level dissimilarity (beta diversity).

Ethnomedicinal Plant DIversity in Thailand

DEFF Research Database (Denmark)

Phumthum, Methee; Srithi, Kamonnate; Inta, Angkhana

2018-01-01

Ethnopharmacological relevance: Plants have provided medicine to humans for thousands of years, and in most parts of the world people still use traditional plant-derived medicine. Knowledge related to traditional use provides an important alternative to unavailable or expensive western medicine i...

Are Tree Species Diversity and Genotypic Diversity Effects on Insect Herbivores Mediated by Ants?

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María José Campos-Navarrete

Full Text Available Plant diversity can influence predators and omnivores and such effects may in turn influence herbivores and plants. However, evidence for these ecological feedbacks is rare. We evaluated if the effects of tree species (SD and genotypic diversity (GD on the abundance of different guilds of insect herbivores associated with big-leaf mahogany (Swietenia macrophylla were contingent upon the protective effects of ants tending extra-floral nectaries of this species. This study was conducted within a larger experiment consisting of mahogany monocultures and species polycultures of four species and -within each of these two plot types- mahogany was represented by either one or four maternal families. We selected 24 plots spanning these treatment combinations, 10 mahogany plants/plot, and within each plot experimentally reduced ant abundance on half of the selected plants, and surveyed ant and herbivore abundance. There were positive effects of SD on generalist leaf-chewers and sap-feeders, but for the latter group this effect depended on the ant reduction treatment: SD positively influenced sap-feeders under ambient ant abundance but had no effect when ant abundance was reduced; at the same time, ants had negative effects on sap feeders in monoculture but no effect in polyculture. In contrast, SD did not influence specialist stem-borers or leaf-miners and this effect was not contingent upon ant reduction. Finally, GD did not influence any of the herbivore guilds studied, and such effects did not depend on the ant treatment. Overall, we show that tree species diversity influenced interactions between a focal plant species (mahogany and ants, and that such effects in turn mediated plant diversity effects on some (sap-feeders but not all the herbivores guilds studied. Our results suggest that the observed patterns are dependent on the combined effects of herbivore identity, diet breadth, and the source of plant diversity.

Genetic Structure and Molecular Diversity of Cacao Plants Established as Local Varieties for More than Two Centuries: The Genetic History of Cacao Plantations in Bahia, Brazil.

Science.gov (United States)

Santos, Elisa S L; Cerqueira-Silva, Carlos Bernard M; Mori, Gustavo M; Ahnert, Dário; Mello, Durval L N; Pires, José Luis; Corrêa, Ronan X; de Souza, Anete P

2015-01-01

Bahia is the most important cacao-producing state in Brazil, which is currently the sixth-largest country worldwide to produce cacao seeds. In the eighteenth century, the Comum, Pará and Maranhão varieties of cacao were introduced into southern Bahia, and their descendants, which are called 'Bahian cacao' or local Bahian varieties, have been cultivated for over 200 years. Comum plants have been used to start plantations in African countries and extended as far as countries in South Asia and Oceania. In Brazil, two sets of clones selected from Bahian varieties and their mutants, the Agronomic Institute of East (SIAL) and Bahian Cacao Institute (SIC) series, represent the diversity of Bahian cacao in germplasm banks. Because the genetic diversity of Bahian varieties, which is essential for breeding programs, remains unknown, the objective of this work was to assess the genetic structure and diversity of local Bahian varieties collected from farms and germplasm banks. To this end, 30 simple sequence repeat (SSR) markers were used to genotype 279 cacao plants from germplasm and local farms. The results facilitated the identification of 219 cacao plants of Bahian origin, and 51 of these were SIAL or SIC clones. Bahian cacao showed low genetic diversity. It could be verified that SIC and SIAL clones do not represent the true diversity of Bahian cacao, with the greatest amount of diversity found in cacao trees on the farms. Thus, a core collection to aid in prioritizing the plants to be sampled for Bahian cacao diversity is suggested. These results provide information that can be used to conserve Bahian cacao plants and applied in breeding programs to obtain more productive Bahian cacao with superior quality and tolerance to major diseases in tropical cacao plantations worldwide.

Genetic roadmap of the Arctic: plant dispersal highways, traffic barriers and capitals of diversity.

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Eidesen, Pernille Bronken; Ehrich, Dorothee; Bakkestuen, Vegar; Alsos, Inger Greve; Gilg, Oliver; Taberlet, Pierre; Brochmann, Christian

2013-11-01

We provide the first comparative multispecies analysis of spatial genetic structure and diversity in the circumpolar Arctic using a common strategy for sampling and genetic analyses. We aimed to identify and explain potential general patterns of genetic discontinuity/connectivity and diversity, and to compare our findings with previously published hypotheses. We collected and analyzed 7707 samples of 17 widespread arctic-alpine plant species for amplified fragment length polymorphisms (AFLPs). Genetic structure, diversity and distinctiveness were analyzed for each species, and extrapolated to cover the geographic range of each species. The resulting maps were overlaid to produce metamaps. The Arctic and Atlantic Oceans, the Greenlandic ice cap, the Urals, and lowland areas between southern mountain ranges and the Arctic were the strongest barriers against gene flow. Diversity was highest in Beringia and gradually decreased into formerly glaciated areas. The highest degrees of distinctiveness were observed in Siberia. We conclude that large-scale general patterns exist in the Arctic, shaped by the Pleistocene glaciations combined with long-standing physical barriers against gene flow. Beringia served as both refugium and source for interglacial (re)colonization, whereas areas further west in Siberia served as refugia, but less as sources for (re)colonization. © 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.

A comparative study on plant diversity in alder (Alnus subcordata stands of natural and plantation areas

Directory of Open Access Journals (Sweden)

SEYED ALIAKBAR REZAEI TALESHI

2014-04-01

Full Text Available Rezaei-Taleshi SA. 2014. A comparative study on plant diversity in alder (Alnus subcordata stands of natural and plantation areas. Biodiversitas 15: 37-45. Diversity index is the useful criteria for evaluating sustainability of forest ecosystems. Current study carried out in Alder (Alnus subcordata C.A. Meyer stands that located in north forests of Iran. The aim of the study is express the plant diversity indices and positive role of the trees both natural and plantation forms. Data of Alder trees and associated species were recorded in sample plots which lay down in study area randomly. The abundance, density, percentage of frequency of each species was calculated by standard methods. The results of analysis revealed that, 47 species (21 trees and shrubs species and 26 herbaceous species were abundant in 80 sample plots both in natural and plantations Alder stands. Whilst the results showed that the number of species in natural area (44 species was more than plantation stands (37 species. Comparison of species distribution in different physiographical situation showed that some species such as Alnus subcordata, Parrotia persica, Rubus hyrcanus and Prunus sp. recorded in spread rang of physiographic variables as elevation, slopes and aspects. The biodiversity criteria as Shannon H’ and Simpsons D and 1/D indexes showed that they were more in natural stands than plantation areas.

Diversity of the Mountain Flora of Central Asia with Emphasis on Alkaloid-Producing Plants

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Karimjan Tayjanov

2017-02-01

Full Text Available The mountains of Central Asia with 70 large and small mountain ranges represent species-rich plant biodiversity hotspots. Major mountains include Saur, Tarbagatai, Dzungarian Alatau, Tien Shan, Pamir-Alai and Kopet Dag. Because a range of altitudinal belts exists, the region is characterized by high biological diversity at ecosystem, species and population levels. In addition, the contact between Asian and Mediterranean flora in Central Asia has created unique plant communities. More than 8100 plant species have been recorded for the territory of Central Asia; about 5000–6000 of them grow in the mountains. The aim of this review is to summarize all the available data from 1930 to date on alkaloid-containing plants of the Central Asian mountains. In Saur 301 of a total of 661 species, in Tarbagatai 487 out of 1195, in Dzungarian Alatau 699 out of 1080, in Tien Shan 1177 out of 3251, in Pamir-Alai 1165 out of 3422 and in Kopet Dag 438 out of 1942 species produce alkaloids. The review also tabulates the individual alkaloids which were detected in the plants from the Central Asian mountains. Quite a large number of the mountain plants produce neurotoxic and cytotoxic alkaloids, indicating that a strong chemical defense is needed under the adverse environmental conditions of these mountains with presumably high pressure from herbivores.

Does plant diversity affect the water balance of established grassland systems?

Science.gov (United States)

Leimer, Sophia; Bischoff, Sebastian; Blaser, Stefan; Boch, Steffen; Busch, Verena; Escher, Peter; Fischer, Markus; Kaupenjohann, Martin; Kerber, Katja; Klaus, Valentin; Michalzik, Beate; Prati, Daniel; Schäfer, Deborah; Schmitt, Barbara; Schöning, Ingo; Schwarz, Martin T.; Siemens, Jan; Thieme, Lisa; Wilcke, Wolfgang

2017-04-01

The water cycle drives nutrient cycles and plant productivity. The impact of land use on the water cycle has been extensively studied and there is experimental evidence that biodiversity modifies the water cycle in grasslands. However, the combined influences of land-use and associated biodiversity on the water cycle in established land-use systems are unclear. Therefore, we investigated how evapotranspiration (ETa), downward water flux (DF), and capillary rise (CR) in topsoil and subsoil are related to land-use and plant diversity in established, commercially managed grassland and compared these results to findings from experiments where plant diversity was manipulated. In three Central European regions ("Biodiversity Exploratories"), we studied 29 grassland plots (50 m x 50 m; 9-11 plots per region) from 2010 to 2015. The land-use types cover pasture, mown pasture, and meadow in at least triplicate per region. On each plot, we measured soil water contents, meteorological data (hourly resolution), cumulative precipitation (biweekly), plant species richness, the number of plants in the functional groups of grasses, herbs, and legumes (annually), and root biomass (once). Potential evapotranspiration (ETp) was calculated from meteorological data per plot. Missing data points of ETp and soil water contents were estimated with Bayesian hierarchical models. ETa, DF, and CR were calculated for two soil layers with a soil water balance model. The model is based on changes in soil water storage between subsequent observation dates and ETp, which was partitioned between soil layers according to root distribution. Water fluxes in annual resolution were statistically analyzed for land-use and biodiversity effects using repeated-measures analysis of variance (ANOVA). Land-use type did not affect water fluxes. Species richness did not influence DF and CR. DF from topsoil was higher on plots with more grass species, which is opposite to the results from a manipulative

Plant diversity patterns in neotropical dry forests and their conservation implications.

Science.gov (United States)

Banda-R, Karina; Delgado-Salinas, Alfonso; Dexter, Kyle G; Linares-Palomino, Reynaldo; Oliveira-Filho, Ary; Prado, Darién; Pullan, Martin; Quintana, Catalina; Riina, Ricarda; Rodríguez M, Gina M; Weintritt, Julia; Acevedo-Rodríguez, Pedro; Adarve, Juan; Álvarez, Esteban; Aranguren B, Anairamiz; Arteaga, Julián Camilo; Aymard, Gerardo; Castaño, Alejandro; Ceballos-Mago, Natalia; Cogollo, Álvaro; Cuadros, Hermes; Delgado, Freddy; Devia, Wilson; Dueñas, Hilda; Fajardo, Laurie; Fernández, Ángel; Fernández, Miller Ángel; Franklin, Janet; Freid, Ethan H; Galetti, Luciano A; Gonto, Reina; González-M, Roy; Graveson, Roger; Helmer, Eileen H; Idárraga, Álvaro; López, René; Marcano-Vega, Humfredo; Martínez, Olga G; Maturo, Hernán M; McDonald, Morag; McLaren, Kurt; Melo, Omar; Mijares, Francisco; Mogni, Virginia; Molina, Diego; Moreno, Natalia Del Pilar; Nassar, Jafet M; Neves, Danilo M; Oakley, Luis J; Oatham, Michael; Olvera-Luna, Alma Rosa; Pezzini, Flávia F; Dominguez, Orlando Joel Reyes; Ríos, María Elvira; Rivera, Orlando; Rodríguez, Nelly; Rojas, Alicia; Särkinen, Tiina; Sánchez, Roberto; Smith, Melvin; Vargas, Carlos; Villanueva, Boris; Pennington, R Toby

2016-09-23

Seasonally dry tropical forests are distributed across Latin America and the Caribbean and are highly threatened, with less than 10% of their original extent remaining in many countries. Using 835 inventories covering 4660 species of woody plants, we show marked floristic turnover among inventories and regions, which may be higher than in other neotropical biomes, such as savanna. Such high floristic turnover indicates that numerous conservation areas across many countries will be needed to protect the full diversity of tropical dry forests. Our results provide a scientific framework within which national decision-makers can contextualize the floristic significance of their dry forest at a regional and continental scale. Copyright © 2016, American Association for the Advancement of Science.

Genotypic diversity of an invasive plant species promotes litter decomposition and associated processes.

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Wang, Xiao-Yan; Miao, Yuan; Yu, Shuo; Chen, Xiao-Yong; Schmid, Bernhard

2014-03-01

Following studies that showed negative effects of species loss on ecosystem functioning, newer studies have started to investigate if similar consequences could result from reductions of genetic diversity within species. We tested the influence of genotypic richness and dissimilarity (plots containing one, three, six or 12 genotypes) in stands of the invasive plant Solidago canadensis in China on the decomposition of its leaf litter and associated soil animals over five monthly time intervals. We found that the logarithm of genotypic richness was positively linearly related to mass loss of C, N and P from the litter and to richness and abundance of soil animals on the litter samples. The mixing proportion of litter from two sites, but not genotypic dissimilarity of mixtures, had additional effects on measured variables. The litter diversity effects on soil animals were particularly strong under the most stressful conditions of hot weather in July: at this time richness and abundance of soil animals were higher in 12-genotype litter mixtures than even in the highest corresponding one-genotype litter. The litter diversity effects on decomposition were in part mediated by soil animals: the abundance of Acarina, when used as covariate in the analysis, fully explained the litter diversity effects on mass loss of N and P. Overall, our study shows that high genotypic richness of S. canadensis leaf litter positively affects richness and abundance of soil animals, which in turn accelerate litter decomposition and P release from litter.

Diversity of use and local knowledge of wild edible plant resources in Nepal

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Uprety Yadav

2012-04-01

Full Text Available Abstract Background Wild edible plants (WEP provide staple and supplement foods, as well as cash income to local communities, thus favouring food security. However, WEP are largely ignored in land use planning and implementation, economic development, and biodiversity conservation. Moreover, WEP-related traditional knowledge is rapidly eroding. Therefore, we designed this study to fulfill a part of the knowledge gap by providing data on diversity, traditional knowledge, economic potential, and conservation value of WEP from Nepal. Methods The information was collected through focus group discussions and key informant interviews. Percentage of general utility of the plants among the study communities was evaluated using the Chi-square (χ2 test of homogeneity. High priority species were identified after consultation with the local stakeholders followed by scoring based on defined criteria. Pairwise ranking was used to assess ethnoecological knowledge to identify the threats to WEP. Results We documented 81 species belonging to Angiosperms (74, Pteridophytes (5, and Fungi (2. Most of the species were used as fruits (44 species followed by vegetables (36. Almost half of the species (47% were also used for purposes other than food. From the species with market value (37% of the total, 10 were identified as high priority species. Pairwise ranking revealed that WEP are threatened mostly by habitat destruction, land-use change and over-harvesting. Some of these plants are crop wild relatives and could thus be used for crop improvement. Interestingly, our study also revealed that young people who spend most of the time in the forest as herdsmen are particularly knowledgeable of wild fruit plants. Conclusion We provide empirical evidence from a relatively large area of Nepal about diversity and status of WEP, as well as methodological insights about the proper knowledge holders to consult. Regarding the unique and important knowledge they have on WEP

Diversity, Adaptability and Ecosystem Resilience

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Keribin, Rozenn; Friend, Andrew

2013-04-01

Our ability to predict climate change and anticipate its impacts depends on Earth System Models (ESMs) and their ability to account for the high number of interacting components of the Earth System and to gauge both their influence on the climate and the feedbacks they induce. The land carbon cycle is a component of ESMs that is still poorly constrained. Since the 1990s dynamic global vegetation models (DGVMs) have become the main tool through which we understand the interactions between plant ecosystems and the climate. While DGVMs have made it clear the impacts of climate change on vegetation could be dramatic, predicting the dieback of rainforests and massive carbon losses from various ecosystems, they are highly variable both in their composition and their predictions. Their treatment of plant diversity and competition in particular vary widely and are based on highly-simplified relationships that do not account for the multiple levels of diversity and adaptability found in real plant ecosystems. The aim of this GREENCYCLES II project is to extend an individual-based DGVM to treat the diversity of physiologies found in plant communities and evaluate their effect if any on the ecosystem's transient dynamics and resilience. In the context of the InterSectoral Impacts Model Intercomparison Project (ISI-MIP), an initiative coordinated by a team at the Potsdam Institute for Climate Impact Research (PIK) that aims to provide fast-track global impact assessments for the IPCC's Fifth Assessment Report, we compare 6 vegetation models including 4 DGVMs under different climate change scenarios and analyse how the very different treatments of plant diversity and interactions from one model to the next affect the models' results. We then investigate a new, more mechanistic method of incorporating plant diversity into the DGVM "Hybrid" based on ecological tradeoffs mediated by plant traits and individual-based competition for light.

Consequences of plant-chemical diversity for domestic goat food preference in Mediterranean forests

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Baraza, Elena; Hódar, José A.; Zamora, Regino

2009-01-01

The domestic goat, a major herbivore in the Mediterranean basin, has demonstrated a strong ability to adapt its feeding behaviour to the chemical characteristics of food, selecting plants according to their nutritive quality. In this study, we determine some chemical characteristics related to plant nutritional quality and its variability among and within five tree species, these being the main components of the mountain forests of SE Spain, with the aim of determining their influence on food selection by this generalist herbivore. We analyse nitrogen, total phenols, condensed tannins and fibre concentration as an indicator of the nutritive value of the different trees. To determine the preference by the domestic goat, we performed two types of feeding-choice assays, where goats had to select between different species or between branches of the same species but from trees of different nutritional quality. The analysis of the plant nutritional quality showed significant differences in the chemical characteristics between species, and a high variability within species. However, when faced with different tree species, the domestic goat selected some of them but showed striking individual differences between goats. When selecting between trees of the same species, the goats showed no differential selection. This limited effect of chemical plant characteristics, together with the variability in foraging behaviour, resulted in a widespread consumption of diverse plant species, which can potentially modulate the effect of the goat on vegetation composition, and open the way for the conservation of traditional livestock grazing on natural protected areas.

An Initiative for the Study and Use of Genetic Diversity of Domesticated Plants and Their Wild Relatives

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Mastretta-Yanes, Alicia; Acevedo Gasman, Francisca; Burgeff, Caroline; Cano Ramírez, Margarita; Piñero, Daniel; Sarukhán, José

2018-01-01

Domestication has been influenced by formal plant breeding since the onset of intensive agriculture and the Green Revolution. Despite providing food security for some regions, intensive agriculture has had substantial detrimental consequences for the environment and does not fulfill smallholder’s needs under most developing countries conditions. Therefore, it is necessary to look for alternative plant production techniques, effective for each environmental, socio-cultural, and economic conditions. This is particularly relevant for countries that are megadiverse and major centers of plant domestication and diversification. In this white paper, a Mexico-centered initiative is proposed, with two main objectives: (1) to study, understand, conserve, and sustainably use the genetic diversity of domesticated plants and their wild relatives, as well as the ongoing evolutionary processes that generate and maintain it; and (2) to strengthen food and forestry production in a socially fair and environmentally friendly way. To fulfill these objectives, the initiative focuses on the source of variability available for domestication (genetic diversity and functional genomics), the context in which domestication acts (breeding and production) and one of its main challenges (environmental change). Research on these components can be framed to target and connect both the theoretical understanding of the evolutionary processes, the practical aspects of conservation, and food and forestry production. The target, main challenges, problems to be faced and key research questions are presented for each component, followed by a roadmap for the consolidation of this proposal as a national initiative. PMID:29515612

An Initiative for the Study and Use of Genetic Diversity of Domesticated Plants and Their Wild Relatives

Directory of Open Access Journals (Sweden)

Alicia Mastretta-Yanes

2018-02-01

Full Text Available Domestication has been influenced by formal plant breeding since the onset of intensive agriculture and the Green Revolution. Despite providing food security for some regions, intensive agriculture has had substantial detrimental consequences for the environment and does not fulfill smallholder’s needs under most developing countries conditions. Therefore, it is necessary to look for alternative plant production techniques, effective for each environmental, socio-cultural, and economic conditions. This is particularly relevant for countries that are megadiverse and major centers of plant domestication and diversification. In this white paper, a Mexico-centered initiative is proposed, with two main objectives: (1 to study, understand, conserve, and sustainably use the genetic diversity of domesticated plants and their wild relatives, as well as the ongoing evolutionary processes that generate and maintain it; and (2 to strengthen food and forestry production in a socially fair and environmentally friendly way. To fulfill these objectives, the initiative focuses on the source of variability available for domestication (genetic diversity and functional genomics, the context in which domestication acts (breeding and production and one of its main challenges (environmental change. Research on these components can be framed to target and connect both the theoretical understanding of the evolutionary processes, the practical aspects of conservation, and food and forestry production. The target, main challenges, problems to be faced and key research questions are presented for each component, followed by a roadmap for the consolidation of this proposal as a national initiative.

An Initiative for the Study and Use of Genetic Diversity of Domesticated Plants and Their Wild Relatives.

Science.gov (United States)

Mastretta-Yanes, Alicia; Acevedo Gasman, Francisca; Burgeff, Caroline; Cano Ramírez, Margarita; Piñero, Daniel; Sarukhán, José

2018-01-01

Domestication has been influenced by formal plant breeding since the onset of intensive agriculture and the Green Revolution. Despite providing food security for some regions, intensive agriculture has had substantial detrimental consequences for the environment and does not fulfill smallholder's needs under most developing countries conditions. Therefore, it is necessary to look for alternative plant production techniques, effective for each environmental, socio-cultural, and economic conditions. This is particularly relevant for countries that are megadiverse and major centers of plant domestication and diversification. In this white paper, a Mexico-centered initiative is proposed, with two main objectives: (1) to study, understand, conserve, and sustainably use the genetic diversity of domesticated plants and their wild relatives, as well as the ongoing evolutionary processes that generate and maintain it; and (2) to strengthen food and forestry production in a socially fair and environmentally friendly way. To fulfill these objectives, the initiative focuses on the source of variability available for domestication ( genetic diversity and functional genomics ), the context in which domestication acts ( breeding and production ) and one of its main challenges ( environmental change ). Research on these components can be framed to target and connect both the theoretical understanding of the evolutionary processes, the practical aspects of conservation, and food and forestry production. The target, main challenges, problems to be faced and key research questions are presented for each component, followed by a roadmap for the consolidation of this proposal as a national initiative.

Importance of Mediator complex in the regulation and integration of diverse signaling pathways in plants

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Subhasis eSamanta

2015-09-01

Full Text Available Basic transcriptional machinery in eukaryotes is assisted by a number of cofactors, which either increase or decrease the rate of transcription. Mediator complex is one such cofactor, and recently has drawn a lot of interest because of its integrative power to converge different signaling pathways before channelling the transcription instructions to the RNA polymerase II machinery. Like yeast and metazoans, plants do possess the Mediator complex across the kingdom, and its isolation and subunit analyses have been reported from the model plant, Arabidopsis. Genetic and molecular analyses have unravelled important regulatory roles of Mediator subunits at every stage of plant life cycle starting from flowering to embryo and organ development, to even size determination. It also contributes immensely to the survival of plants against different environmental vagaries by the timely activation of its resistance mechanisms. Here, we have provided an overview of plant Mediator complex starting from its discovery to regulation of stoichiometry of its subunits. We have also reviewed involvement of different Mediator subunits in different processes and pathways including defense response pathways evoked by diverse biotic cues. Wherever possible, attempts have been made to provide mechanistic insight of Mediator’s involvement in these processes.

Importance of Mediator complex in the regulation and integration of diverse signaling pathways in plants.

Science.gov (United States)

Samanta, Subhasis; Thakur, Jitendra K

2015-01-01

Basic transcriptional machinery in eukaryotes is assisted by a number of cofactors, which either increase or decrease the rate of transcription. Mediator complex is one such cofactor, and recently has drawn a lot of interest because of its integrative power to converge different signaling pathways before channeling the transcription instructions to the RNA polymerase II machinery. Like yeast and metazoans, plants do possess the Mediator complex across the kingdom, and its isolation and subunit analyses have been reported from the model plant, Arabidopsis. Genetic, and molecular analyses have unraveled important regulatory roles of Mediator subunits at every stage of plant life cycle starting from flowering to embryo and organ development, to even size determination. It also contributes immensely to the survival of plants against different environmental vagaries by the timely activation of its resistance mechanisms. Here, we have provided an overview of plant Mediator complex starting from its discovery to regulation of stoichiometry of its subunits. We have also reviewed involvement of different Mediator subunits in different processes and pathways including defense response pathways evoked by diverse biotic cues. Wherever possible, attempts have been made to provide mechanistic insight of Mediator's involvement in these processes.

Genetic diversity and symbiotic compatibility among rhizobial strains and Desmodium incanum and Lotus spp. plants

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Camille E Granada

2014-06-01

Full Text Available This work aimed to evaluate the symbiotic compatibility and nodulation efficiency of rhizobia isolated from Desmodium incanum, Lotus corniculatus, L. subbiflorus, L. uliginosus and L. glaber plants by cross-inoculation. Twelve reference strains and 21 native isolates of rhizobia were genetically analyzed by the BOX-PCR technique, which showed a high genetic diversity among the rhizobia studied. The isolates were also characterized based on their production of indolic compounds and siderophores, as well as on their tolerance to salinity. Fifteen of the 33 rhizobia analyzed were able to produce indolic compounds, whereas 13 produced siderophores. All the tested rhizobia were sensitive to high salinity, although some were able to grow in solutions of up to 2% NaCl. Most of the native rhizobia isolated from L. uliginosus were able to induce nodulation in all plant species studied. In a greenhouse experiment using both D. incanum and L. corniculatus plants, the rhizobia isolate UFRGS Lu2 promoted the greatest plant growth. The results demonstrate that there are native rhizobia in the soils of southern Brazil that have low host specificity and are able to induce nodulation and form active nodules in several plant species.

Functional genomic analysis supports conservation of function among cellulose synthase-like a gene family members and suggests diverse roles of mannans in plants

DEFF Research Database (Denmark)

Liepman, Aaron H; Nairn, C Joseph; Willats, William G T

2007-01-01

from Arabidopsis (Arabidopsis thaliana), guar (Cyamopsis tetragonolobus), and Populus trichocarpa catalyze beta-1,4-mannan and glucomannan synthase reactions in vitro. Mannan polysaccharides and homologs of CslA genes appear to be present in all lineages of land plants analyzed to date. In many plants......, the CslA genes are members of extended multigene families; however, it is not known whether all CslA proteins are glucomannan synthases. CslA proteins from diverse land plant species, including representatives of the mono- and dicotyledonous angiosperms, gymnosperms, and bryophytes, were produced...... they are prevalent at cell junctions and in buds. Taken together, these results demonstrate that members of the CslA gene family from diverse plant species encode glucomannan synthases and support the hypothesis that mannans function in metabolic networks devoted to other cellular processes in addition to cell wall...

Can the reproductive system of a rare and narrowly endemic plant species explain its high genetic diversity?

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Daniele M. Rodrigues

2018-01-01

Full Text Available ABSTRACT The reproductive system of flowering plants can be highly variable, affecting their biology, gene flow and genetic variability among populations. Petunia secreta is a rare annual endemic species of Pedra do Segredo, located in the municipality of Caçapava do Sul, state of Rio Grande do Sul, Brazil. Although rare, the species possesses a high level of genetic variability. We investigated the reproductive system of P. secreta, including fruit production and seed germinability, in order to determine if its reproductive system can explain its genetic diversity. We sampled five populations and conducted five greenhouse hand-pollination treatments: 1 autonomous apomixis; 2 self-pollination; 3 hand self-pollination; 4 geitonogamy; and 5 cross-pollination. We analysed a total of 40 plants, 468 flowers, and 6,500 seeds. Only autonomous apomixis and self-pollination did not produce fruit. No differences in fruit weight were observed among pollination treatments (P > 0.05. Seeds of two colours were produced, with no differences in germinability. Considering all plants, populations, and treatments, the average germinability was 73 % (range 9 % to 100 %. These results, along with other previous studies, indicate that the reproductive systems of P. secreta, and its large effective population size, can explain its high genetic diversity.

Plant diversity on high elevation islands – drivers of species richness and endemism

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Severin D.H. Irl

2016-10-01

Full Text Available High elevation islands elicit fascination because of their large array of endemic species and strong environmental gradients. First, I define a high elevation island according to geographic and environmental characteristics. Then, within this high elevation island framework, I address local disturbance effects on plant distribution, drivers of diversity and endemism on the island scale, and global patterns of treeline elevation and climate change. Locally, introduced herbivores have strong negative effects on the summit scrub of my model island La Palma (Canary Islands, while roads have unexpected positive effects on endemics. On the island scale, topography and climate drive diversity and endemism. Hotspots of endemicity are found in summit regions – a general pattern on high elevation islands. The global pattern of treeline elevation behaves quite differently on islands than on the mainland. A thorough literature review and climate projections suggest that climate change will profoundly affect oceanic island floras.

Native wildflower plantings support wild bee abundance and diversity in agricultural landscapes across the United States.

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Williams, Neal M; Ward, Kimiora L; Pope, Nathaniel; Isaacs, Rufus; Wilson, Julianna; May, Emily A; Ellis, Jamie; Daniels, Jaret; Pence, Akers; Ullmann, Katharina; Peters, Jeff

2015-12-01

Global trends in pollinator-dependent crops have raised awareness of the need to support managed and wild bee populations to ensure sustainable crop production. Provision of sufficient forage resources is a key element for promoting bee populations within human impacted landscapes, particularly those in agricultural lands where demand for pollination service is high and land use and management practices have reduced available flowering resources. Recent government incentives in North America and Europe support the planting of wildflowers to benefit pollinators; surprisingly, in North America there has been almost no rigorous testing of the performance of wildflower mixes, or their ability to support wild bee abundance and diversity. We tested different wildflower mixes in a spatially replicated, multiyear study in three regions of North America where production of pollinator-dependent crops is high: Florida, Michigan, and California. In each region, we quantified flowering among wildflower mixes composed of annual and perennial species, and with high and low relative diversity. We measured the abundance and species richness of wild bees, honey bees, and syrphid flies at each mix over two seasons. In each region, some but not all wildflower mixes provided significantly greater floral display area than unmanaged weedy control plots. Mixes also attracted greater abundance and richness of wild bees, although the identity of best mixes varied among regions. By partitioning floral display size from mix identity we show the importance of display size for attracting abundant and diverse wild bees. Season-long monitoring also revealed that designing mixes to provide continuous bloom throughout the growing season is critical to supporting the greatest pollinator species richness. Contrary to expectation, perennials bloomed in their first season, and complementarity in attraction of pollinators among annuals and perennials suggests that inclusion of functionally diverse

Receding Water Line and Interspecific Competition Determines Plant Community Composition and Diversity in Wetlands in Beijing

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Wang, Zhengjun; Gong, Huili; Zhang, Jing

2015-01-01

Climate and human-induced wetland degradation has accelerated in recent years, not only resulting in reduced ecosystem services but also greatly affecting the composition and diversity of wetland plant communities. To date, the knowledge of the differences in community parameters and their successional trends in degraded wetlands remains scarce. Here based on remote sensing images, geographic information system technology, and statistical methods, we produced a successional gradient map of the Yeyahu Wetland Nature Reserve in Beijing, which has experienced a steady decline in water level in recent decades. In addition, we analyzed community composition and diversity along with each identified gradient. The results showed that community diversity decreases while dominance increases with the progress of succession, with the highest diversity occurring during the early stage of succession. Moreover, the community demonstrates greater similarity among subareas during later successional stages, and the similarity coefficients calculated from the important value (IV) of each species are more accurate. Correlation analysis showed that the impact of soil factors on diversity was not significant at a subarea scale, although these nutrients showed an increasing trend with the community succession. Furthermore, the IVs of the dominant species had a particularly significant impact on diversity, showing a significantly negative correlation with diversity indices and a significantly positive correlation with dominance indices. Further analysis showed that the retreat of water level resulted from sustained drought and local human activities was a major extrinsic driving force resulting in observed differences in the community successional stages, which resulted in differences in community composition and diversity. On the other hand, interspecific competition was the main intrinsic mechanism, which significantly influenced the IVs of the dominant species and community diversity

Fungal diversity in the rhizosphere of endemic plant species of Tenerife (Canary Islands): relationship to vegetation zones and environmental factors

DEFF Research Database (Denmark)

Zachow, Christin; Berg, Christian; Müller, Henry

2008-01-01

, molecular analysis of fungal communities was determined by single-strand conformation polymorphism (SSCP) analysis using universal and specific primers for Trichoderma. The highly diverse fungal communities were mainly characterized by ectomycorrhiza-forming Basidiomycota and a high proportion of yet......-unidentified species. Besides, Trichoderma-specific SSCP resulted in low diversity of mainly cosmopolitan species, for example Hypocrea lixii/T. harzianum. The dominance of T. harzianum was confirmed by cultivation. All Trichoderma isolates show an extraordinarily high antagonistic potential towards different groups...... of plant pathogens, supporting the hypothesis of extensive colonization by highly competitive Trichoderma species from the continent. In contrast, biodiversity patterns of the whole fungal and plant communities follow the same ecological rules. Furthermore, a high statistical correlation between fungal...

Evaluating Methods for Isolating Total RNA and Predicting the Success of Sequencing Phylogenetically Diverse Plant Transcriptomes

Science.gov (United States)

Bruskiewich, Richard; Burris, Jason N.; Carrigan, Charlotte T.; Chase, Mark W.; Clarke, Neil D.; Covshoff, Sarah; dePamphilis, Claude W.; Edger, Patrick P.; Goh, Falicia; Graham, Sean; Greiner, Stephan; Hibberd, Julian M.; Jordon-Thaden, Ingrid; Kutchan, Toni M.; Leebens-Mack, James; Melkonian, Michael; Miles, Nicholas; Myburg, Henrietta; Patterson, Jordan; Pires, J. Chris; Ralph, Paula; Rolf, Megan; Sage, Rowan F.; Soltis, Douglas; Soltis, Pamela; Stevenson, Dennis; Stewart, C. Neal; Surek, Barbara; Thomsen, Christina J. M.; Villarreal, Juan Carlos; Wu, Xiaolei; Zhang, Yong; Deyholos, Michael K.; Wong, Gane Ka-Shu

2012-01-01

Next-generation sequencing plays a central role in the characterization and quantification of transcriptomes. Although numerous metrics are purported to quantify the quality of RNA, there have been no large-scale empirical evaluations of the major determinants of sequencing success. We used a combination of existing and newly developed methods to isolate total RNA from 1115 samples from 695 plant species in 324 families, which represents >900 million years of phylogenetic diversity from green algae through flowering plants, including many plants of economic importance. We then sequenced 629 of these samples on Illumina GAIIx and HiSeq platforms and performed a large comparative analysis to identify predictors of RNA quality and the diversity of putative genes (scaffolds) expressed within samples. Tissue types (e.g., leaf vs. flower) varied in RNA quality, sequencing depth and the number of scaffolds. Tissue age also influenced RNA quality but not the number of scaffolds ≥1000 bp. Overall, 36% of the variation in the number of scaffolds was explained by metrics of RNA integrity (RIN score), RNA purity (OD 260/230), sequencing platform (GAIIx vs HiSeq) and the amount of total RNA used for sequencing. However, our results show that the most commonly used measures of RNA quality (e.g., RIN) are weak predictors of the number of scaffolds because Illumina sequencing is robust to variation in RNA quality. These results provide novel insight into the methods that are most important in isolating high quality RNA for sequencing and assembling plant transcriptomes. The methods and recommendations provided here could increase the efficiency and decrease the cost of RNA sequencing for individual labs and genome centers. PMID:23185583

Assessing diversity of prairie plants using remote sensing

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Gamon, J. A.; Wang, R.

2017-12-01

Biodiversity loss endangers ecosystem services and is considered as a global change that may generate unacceptable environmental consequences for the Earth system. Global biodiversity observations are needed to provide a better understanding of biodiversity - ecosystem services relationships and to provide a stronger foundation for conserving the Earth's biodiversity. While remote sensing metrics have been applied to estimate α biodiversity directly through optical diversity, a better understanding of the mechanisms behind the optical diversity-biodiversity relationship is needed. We designed a series of experiments at Cedar Creek Ecosystem Science Reserve, MN, to investigate the scale dependence of optical diversity and explore how species richness, evenness, and composition affect optical diversity. We collected hyperspectral reflectance of 16 prairie species using both a full-range field spectrometer fitted with a leaf clip, and an imaging spectrometer carried by a tram system to simulate plot-level images with different species richness, evenness, and composition. Two indicators of spectral diversity were explored: the coefficient of variation (CV) of spectral reflectance in space, and spectral classification using a Partial Least Squares Discriminant Analysis (PLS-DA). Our results showed that sampling methods (leaf clip-derived data vs. image-derived data) affected the optical diversity estimation. Both optical diversity indices were affected by species richness and evenness (Pguide regional studies of biodiversity estimation using high spatial and spectral resolution remote sensing.

Vegetation types, dominant compositions, woody plant diversity and stand structure in Trishna Wildlife Sanctuary of Northeast India.

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Majumdar, Koushik; Datta, B K

2015-03-01

Present study was carried out to assess the vegetation types, diversity and phytosociological status of woody plants in Trishna Wildlife Sanctuary of Tripura, Northeast India. Vegetation data was derived by 25 line transects (10 m wide and 500 m length, each 0.5 ha size). All woody species at >10 cm gbh (Girth at Breast Height) within each plots were measured and counted. A total of six forest types were classified by cluster analysis using Importance Value Index (IVI) of 289 woody species. Species diversity, forest structure and woody community associations were evaluated and discussed. One way ANOVA revealed significant differences in all species diversity measures and stand structure along the forest types. Distribution of stem density at ten different gbh classes showed reverse J-shaped curves. Population status of woody plants was also examined through grouping of all individuals into four population age stages viz. sapling ( or = 30 - 120 - 210 cm gbh) and old (> or =210 cm). To observe dominant composition and species population trend, IVI of top ten dominant species from all forest types were tabulated. The present study suggested that Trishna Wildlife Sanctuary is an important habitat in Tripura from floristic point of view and it should be conserved on priority basis for remaining wildlife endurances and monitor for forest livelihoods products for sustainable biodiversity conservation in this region.

Plant diversity and energy potency of community forest in East Kalimantan, Indonesia: Searching for fast growing wood species for energy production

Directory of Open Access Journals (Sweden)

RUDIANTO AMIRTA

2016-05-01

Full Text Available Abstract. Amirta R, Yuliansyah, Angi EM, Ananto BR, Setiyono B, Haqiqi MT, Septiana HA, Lodong M, Oktavianto RN. 2016. Plant diversity and energy potency of community forest in East Kalimantan, Indonesia: Searching for fast growing wood species for energy production. Nusantara Bioscience 8: 22-30. Nowadays, there is an increasing interest in intensifying the production and use of biomass to replace fossil fuels for the production of heat and electricity, especially for a remote area that generally abundance with the wood biomass resources including in East Kalimantan, Indonesia. In this work, diversity of plant species that commonly growth in community forest area of East Kutai District, East Kalimantan, Indonesia had been studied to point out their energy potency to be used as biomass feedstock for the electricity generated. Diversity of plant species in the community forest was evaluated by making 13 sampling plots with 20mx20m size approximately. Concurently, the energy properties of plant biomass such as proximate and ultimate compositions were also analyzed using ASTM methods. Results showed that more than 30 species of tropical trees and wood shrubs were grown in the community forest. The presence of them was classified into two different growth of origins: natural and artificial plantation, and also three different categories of plant resources: tree species from logged over forest, commercial fast growing plant tree species for the fiber production and woody shrubs. The highest dominancy and productivity was found in Paraserianthes falcataria (L. Nielsen since the wood biomass was artificially planted for the commercial purposes. Among the 31 plant species analyzed we found the highest energy potency was obtained from Cratoxylum cochinchinense (Lour. Blume that produced 3.17 MWh/ton, and the lowest was from Trema orientalis (L. Blume 0.97 MWh/ton. The woody shrubs species such as Vernonia amigdalina Delile., Piper aduncum L., Gliricidia

Flower diversity and bee reproduction in an arid ecosystem

OpenAIRE

Dorado, Jimena; V?zquez, Diego P.

2016-01-01

Background: Diverse flower communities are more stable in floral resource production along the flowering season, but the question about how the diversity and stability of resources affect pollinator reproduction remains open. High plant diversity could favor short foraging trips, which in turn would enhance bee fitness. In addition to plant diversity, greater temporal stability of floral resources in diverse communities could favor pollinator fitness because such communities are likely to occ...

Landscape configurational heterogeneity by small-scale agriculture, not crop diversity, maintains pollinators and plant reproduction in western Europe.

Science.gov (United States)

Hass, Annika L; Kormann, Urs G; Tscharntke, Teja; Clough, Yann; Baillod, Aliette Bosem; Sirami, Clélia; Fahrig, Lenore; Martin, Jean-Louis; Baudry, Jacques; Bertrand, Colette; Bosch, Jordi; Brotons, Lluís; Burel, Françoise; Georges, Romain; Giralt, David; Marcos-García, María Á; Ricarte, Antonio; Siriwardena, Gavin; Batáry, Péter

2018-02-14

Agricultural intensification is one of the main causes for the current biodiversity crisis. While reversing habitat loss on agricultural land is challenging, increasing the farmland configurational heterogeneity (higher field border density) and farmland compositional heterogeneity (higher crop diversity) has been proposed to counteract some habitat loss. Here, we tested whether increased farmland configurational and compositional heterogeneity promote wild pollinators and plant reproduction in 229 landscapes located in four major western European agricultural regions. High-field border density consistently increased wild bee abundance and seed set of radish ( Raphanus sativus ), probably through enhanced connectivity. In particular, we demonstrate the importance of crop-crop borders for pollinator movement as an additional experiment showed higher transfer of a pollen analogue along crop-crop borders than across fields or along semi-natural crop borders. By contrast, high crop diversity reduced bee abundance, probably due to an increase of crop types with particularly intensive management. This highlights the importance of crop identity when higher crop diversity is promoted. Our results show that small-scale agricultural systems can boost pollinators and plant reproduction. Agri-environmental policies should therefore aim to halt and reverse the current trend of increasing field sizes and to reduce the amount of crop types with particularly intensive management. © 2018 The Author(s).

Mite diversity on plants of different families found in the Brazilian Atlantic Forest

International Nuclear Information System (INIS)

Castro, Tatiane M.M.G. de; Moraes, Gilberto J. de

2007-01-01

This work reports the occurrence of mites predominantly predatory, phytophagous and with varied feeding habits on plants of the Atlantic Forest vegetation type of the State of Sao Paulo. The objective was to estimate the possible role of the Atlantic Forest vegetation as reservoir of these groups of mites which are also found on plants of agricultural importance. Samples were taken from 187 plant species belonging to 73 families in three vegetation types of the Atlantic Forest from February of 2001 to October of 2002. A total of 2,887 mites belonging to 163 morpho-species of 16 families were collected. Mite diversity was high, especially of predatory mites; these corresponded to 1,562 specimens of 92 morpho-species. Within this group, Phytoseiidae comprised 71% of the specimens and 62% of the morpho-species. Phytophagous mites comprised 836 specimens of 36 morpho-species. Within this group, Tenuipalpidae comprised the larger proportion of specimens (61%) whereas Tetranychidae corresponded to the larger proportion of morpho-species (64%). Mites with varied feeding habits corresponded to 491 specimens of 36 morpho-species. In this group, the larger proportion of specimens (52%) consisted of Ascidae and the larger proportion of morpho-species (42%) consisted of Tydeinae (family Tydeidae). High abundance and high morpho-species richness of mites of predominantly predatory, phytophagous and variable feeding habits were observed on 17, five and nine plant species, respectively. The results obtained suggest the importance of plants of the studied vegetation as reservoirs of predatory mites. (author)

Mite diversity on plants of different families found in the Brazilian Atlantic Forest

Energy Technology Data Exchange (ETDEWEB)

Castro, Tatiane M.M.G. de [UNESP, Jaboticabal, SP (Brazil). Faculdade de Ciencias Agrarias e Veterinarias. Dept. de Fitossanidade]. E-mail: tatianemarie@yahoo.com.br; Moraes, Gilberto J. de [Universidade de Sao Paulo (USP), Piracicaba, SP (Brazil). Escola Superior de Agricultura Luiz de Queiroz (ESALQ). Dept. Entomologia, Fitopatologia e Zoologia Agricola]. E-mail: gjmoraes@esalq.usp.br

2007-09-15

This work reports the occurrence of mites predominantly predatory, phytophagous and with varied feeding habits on plants of the Atlantic Forest vegetation type of the State of Sao Paulo. The objective was to estimate the possible role of the Atlantic Forest vegetation as reservoir of these groups of mites which are also found on plants of agricultural importance. Samples were taken from 187 plant species belonging to 73 families in three vegetation types of the Atlantic Forest from February of 2001 to October of 2002. A total of 2,887 mites belonging to 163 morpho-species of 16 families were collected. Mite diversity was high, especially of predatory mites; these corresponded to 1,562 specimens of 92 morpho-species. Within this group, Phytoseiidae comprised 71% of the specimens and 62% of the morpho-species. Phytophagous mites comprised 836 specimens of 36 morpho-species. Within this group, Tenuipalpidae comprised the larger proportion of specimens (61%) whereas Tetranychidae corresponded to the larger proportion of morpho-species (64%). Mites with varied feeding habits corresponded to 491 specimens of 36 morpho-species. In this group, the larger proportion of specimens (52%) consisted of Ascidae and the larger proportion of morpho-species (42%) consisted of Tydeinae (family Tydeidae). High abundance and high morpho-species richness of mites of predominantly predatory, phytophagous and variable feeding habits were observed on 17, five and nine plant species, respectively. The results obtained suggest the importance of plants of the studied vegetation as reservoirs of predatory mites. (author)

The Arabidopsis synaptotagmin SYTA regulates the cell-to-cell movement of diverse plant viruses

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Asako eUchiyama

2014-11-01

Full Text Available Synaptotagmins are a large gene family in animals that have been extensively characterized due to their role as calcium sensors to regulate synaptic vesicle exocytosis and endocytosis in neurons, and dense core vesicle exocytosis for hormone secretion from neuroendocrine cells. Thought to be exclusive to animals, synaptotagmins have recently been characterized in Arabidopsis thaliana, in which they comprise a five gene family. Using infectivity and leaf-based functional assays, we have shown that Arabidopsis SYTA regulates endocytosis and marks an endosomal vesicle recycling pathway to regulate movement protein-mediated trafficking of the Begomovirus Cabbage leaf curl virus (CaLCuV and the Tobamovirus Tobacco mosaic virus (TMV through plasmodesmata (Lewis and Lazarowitz, 2010. To determine whether SYTA has a central role in regulating the cell-to-cell trafficking of a wider range of diverse plant viruses, we extended our studies here to examine the role of SYTA in the cell-to-cell movement of additional plant viruses that employ different modes of movement, namely the Potyvirus Turnip mosaic virus (TuMV, the Caulimovirus Cauliflower mosaic virus (CaMV and the Tobamovirus Turnip vein clearing virus (TVCV, which in contrast to TMV does efficiently infect Arabidopsis. We found that both TuMV and TVCV systemic infection, and the cell-to-cell trafficking of the their movement proteins, were delayed in the Arabidopsis Col-0 syta-1 knockdown mutant. In contrast, CaMV systemic infection was not inhibited in syta-1. Our studies show that SYTA is a key regulator of plant virus intercellular movement, being necessary for the ability of diverse cell-to-cell movement proteins encoded by Begomoviruses (CaLCuV MP, Tobamoviruses (TVCV and TMV 30K protein and Potyviruses (TuMV P3N-PIPO to alter PD and thereby mediate virus cell-to-cell spread.

History and conservation of wild and cultivated plant diversity in Uganda: Forest species and banana varieties as case studies

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Alan C. Hamilton

2016-02-01

Full Text Available The history of wild and cultivated plant diversity in Uganda is reviewed, taking forest species and bananas as examples. Palynological research into past human influences on forests is reassessed. The evidence suggests that crops were first introduced into the country at about 1000 BCE, farming communities practicing slash and burn agriculture started to significantly influence the floristic composition of forests during the 1st millennium BCE and there was a major episode of forest reduction at about 1000 CE related to socio-economic change. Bananas were probably introduced in the early centuries CE. The colonial era from 1894 saw the introduction of new concepts of land ownership and the establishment of forest reserves and agricultural stations. Forests and banana diversity are currently under threat, Uganda having a very high rate of deforestation and endemic banana varieties proving susceptible to introduced pests and diseases. It is suggested that, under these circumstances, conservationists take an opportunistic approach to field engagement, making use of favourable local conditions as they arise. Partnerships should be sought with elements of society concerned with sustainable use, provision of ecosystem services and cultural survival to widen the social base of plant conservation. International organisations involved in conservation of plant genetic resources and wild plant species should collaborate with one another to develop the conceptual basis of plant conservation, to make it more relevant to countries like Uganda.

Enhanced interannual precipitation variability increases plant functional diversity that in turn ameliorates negative impact on productivity.

Science.gov (United States)

Gherardi, Laureano A; Sala, Osvaldo E

2015-12-01

Although precipitation interannual variability is projected to increase due to climate change, effects of changes in precipitation variance have received considerable less attention than effects of changes in the mean state of climate. Interannual precipitation variability effects on functional diversity and its consequences for ecosystem functioning are assessed here using a 6-year rainfall manipulation experiment. Five precipitation treatments were switched annually resulting in increased levels of precipitation variability while maintaining average precipitation constant. Functional diversity showed a positive response to increased variability due to increased evenness. Dominant grasses decreased and rare plant functional types increased in abundance because grasses showed a hump-shaped response to precipitation with a maximum around modal precipitation, whereas rare species peaked at high precipitation values. Increased functional diversity ameliorated negative effects of precipitation variability on primary production. Rare species buffered the effect of precipitation variability on the variability in total productivity because their variance decreases with increasing precipitation variance. © 2015 John Wiley & Sons Ltd/CNRS.

Resource-Mediated Indirect Effects of Grassland Management on Arthropod Diversity

Science.gov (United States)

Simons, Nadja K.; Gossner, Martin M.; Lewinsohn, Thomas M.; Boch, Steffen; Lange, Markus; Müller, Jörg; Pašalić, Esther; Socher, Stephanie A.; Türke, Manfred; Fischer, Markus; Weisser, Wolfgang W.

2014-01-01

Intensive land use is a driving force for biodiversity decline in many ecosystems. In semi-natural grasslands, land-use activities such as mowing, grazing and fertilization affect the diversity of plants and arthropods, but the combined effects of different drivers and the chain of effects are largely unknown. In this study we used structural equation modelling to analyse how the arthropod communities in managed grasslands respond to land use and whether these responses are mediated through changes in resource diversity or resource quantity (biomass). Plants were considered resources for herbivores which themselves were considered resources for predators. Plant and arthropod (herbivores and predators) communities were sampled on 141 meadows, pastures and mown pastures within three regions in Germany in 2008 and 2009. Increasing land-use intensity generally increased plant biomass and decreased plant diversity, mainly through increasing fertilization. Herbivore diversity decreased together with plant diversity but showed no response to changes in plant biomass. Hence, land-use effects on herbivore diversity were mediated through resource diversity rather than quantity. Land-use effects on predator diversity were mediated by both herbivore diversity (resource diversity) and herbivore quantity (herbivore biomass), but indirect effects through resource quantity were stronger. Our findings highlight the importance of assessing both direct and indirect effects of land-use intensity and mode on different trophic levels. In addition to the overall effects, there were subtle differences between the different regions, pointing to the importance of regional land-use specificities. Our study underlines the commonly observed strong effect of grassland land use on biodiversity. It also highlights that mechanistic approaches help us to understand how different land-use modes affect biodiversity. PMID:25188423

Altitudinal patterns of plant diversity on the Jade Dragon Snow Mountain, southwestern China.

Science.gov (United States)

Xu, Xiang; Zhang, Huayong; Tian, Wang; Zeng, Xiaoqiang; Huang, Hai

2016-01-01

Understanding altitudinal patterns of biological diversity and their underlying mechanisms is critically important for biodiversity conservation in mountainous regions. The contribution of area to plant diversity patterns is widely acknowledged and may mask the effects of other determinant factors. In this context, it is important to examine altitudinal patterns of corrected taxon richness by eliminating the area effect. Here we adopt two methods to correct observed taxon richness: a power-law relationship between richness and area, hereafter "method 1"; and richness counted in equal-area altitudinal bands, hereafter "method 2". We compare these two methods on the Jade Dragon Snow Mountain, which is the nearest large-scale altitudinal gradient to the Equator in the Northern Hemisphere. We find that seed plant species richness, genus richness, family richness, and species richness of trees, shrubs, herbs and Groups I-III (species with elevational range size 500 m, respectively) display distinct hump-shaped patterns along the equal-elevation altitudinal gradient. The corrected taxon richness based on method 2 (TRcor2) also shows hump-shaped patterns for all plant groups, while the one based on method 1 (TRcor1) does not. As for the abiotic factors influencing the patterns, mean annual temperature, mean annual precipitation, and mid-domain effect explain a larger part of the variation in TRcor2 than in TRcor1. In conclusion, for biodiversity patterns on the Jade Dragon Snow Mountain, method 2 preserves the significant influences of abiotic factors to the greatest degree while eliminating the area effect. Our results thus reveal that although the classical method 1 has earned more attention and approval in previous research, method 2 can perform better under certain circumstances. We not only confirm the essential contribution of method 1 in community ecology, but also highlight the significant role of method 2 in eliminating the area effect, and call for more

Fungal Endophyte Diversity and Bioactivity in the Indian Medicinal Plant Ocimum sanctum Linn.

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Kanika Chowdhary

Full Text Available Endophytic mycopopulation isolated from India's Queen of herbs Tulsi (Ocimum sanctum were explored and investigated for their diversity and antiphytopathogenic activity against widespread plant pathogens Botrytis cinerea, Sclerotinia sclerotiorum, Rhizoctonia solani and Fusarium oxysporum. 90 fungal isolates, representing 17 genera were recovered from 313 disease-free and surface sterilised plant segments (leaf and stem tissues from three different geographic locations (Delhi, Hyderabad and Mukteshwar during distinct sampling times in consequent years 2010 and 2011 in India. Fungal endophytes were subjected to molecular identification based on rDNA ITS sequence analysis. Plant pathogens such as F. verticillioides, B. maydis, C. coarctatum, R. bataticola, Hypoxylon sp., Diaporthe phaseolorum, Alternaria tenuissima and A. alternata have occurred as endophyte only during second sampling (second sampling in 2011 in the present study. Bi-plot generated by principal component analysis suggested tissue specificity of certain fungal endophytes. Dendrogram revealed species abundance as a function of mean temperature of the location at the time of sampling. Shannon diversity in the first collection is highest in Hyderabad leaf tissues (H' = 1.907 whereas in second collection it was highest from leaf tissues of Delhi (H' = 1.846. Mukteshwar (altitude: 7500 feet reported least isolation rate in second collection. Nearly 23% of the total fungal isolates were considered as potent biocontrol agent. Hexane extract of M. phaseolina recovered from Hyderabad in first collection demonstrated highest activity against S. sclerotiorum with IC50 value of 0.38 mg/ml. Additionally, its components 2H-pyran-2-one, 5,6-dihydro-6-pentyl and palmitic acid, methyl ester as reported by GC-MS Chromatogram upon evaluation for their antiphytopathogenic activity exhibited IC50 value of 1.002 and 0.662 against respectively S. sclerotiorum indicating their significant role in

Mapping Genetic Diversity of Cherimoya (Annona cherimola Mill.): Application of Spatial Analysis for Conservation and Use of Plant Genetic Resources

Science.gov (United States)

van Zonneveld, Maarten; Scheldeman, Xavier; Escribano, Pilar; Viruel, María A.; Van Damme, Patrick; Garcia, Willman; Tapia, César; Romero, José; Sigueñas, Manuel; Hormaza, José I.

2012-01-01

There is a growing call for inventories that evaluate geographic patterns in diversity of plant genetic resources maintained on farm and in species' natural populations in order to enhance their use and conservation. Such evaluations are relevant for useful tropical and subtropical tree species, as many of these species are still undomesticated, or in incipient stages of domestication and local populations can offer yet-unknown traits of high value to further domestication. For many outcrossing species, such as most trees, inbreeding depression can be an issue, and genetic diversity is important to sustain local production. Diversity is also crucial for species to adapt to environmental changes. This paper explores the possibilities of incorporating molecular marker data into Geographic Information Systems (GIS) to allow visualization and better understanding of spatial patterns of genetic diversity as a key input to optimize conservation and use of plant genetic resources, based on a case study of cherimoya (Annona cherimola Mill.), a Neotropical fruit tree species. We present spatial analyses to (1) improve the understanding of spatial distribution of genetic diversity of cherimoya natural stands and cultivated trees in Ecuador, Bolivia and Peru based on microsatellite molecular markers (SSRs); and (2) formulate optimal conservation strategies by revealing priority areas for in situ conservation, and identifying existing diversity gaps in ex situ collections. We found high levels of allelic richness, locally common alleles and expected heterozygosity in cherimoya's putative centre of origin, southern Ecuador and northern Peru, whereas levels of diversity in southern Peru and especially in Bolivia were significantly lower. The application of GIS on a large microsatellite dataset allows a more detailed prioritization of areas for in situ conservation and targeted collection across the Andean distribution range of cherimoya than previous studies could do, i.e. at

Species richness, alpha and beta diversity of trees, shrubs and herbaceous plants in the woodlands of swat, pakistan

International Nuclear Information System (INIS)

Akhtar, N.; Bergmeier, E.

2015-01-01

The variation in species richness and diversity of trees, shrubs and herbs in the mountains of Miandam, Swat, North Pakistan, along an elevation gradient between 1600 m and 3400 m was explored. Field data were collected in 18 altitudinal intervals of 100 m each. Polynomial regression was used to find relations of the different growth forms with elevation. The Shannon index was used for calculating α-diversity and the Simpson index for β-diversity. Species richness and α-diversity of herbs were unrelated to elevation. Herbaceous species turnover was high, ranging between 0.46 and 0.89, with its maximum between 2700 and 3000 m. Hump-shaped relationship was observed for shrubs with maximum richness between 2000 and 2200 m; and α-diversity decreased monotonically. Turnover of shrub species was highest between 2000 and 2500 m. Tree species richness was highest at low elevations, and α-diversity was relatively low along the entire gradient. Tree species turnover was also high in the lower zone and again at 2600-2800 m. Species richness of all vascular plants was highest at 2200-2500 m, and α-diversity was highest in the lower part of the gradient. Beta diversity of all growth forms was quite high ranging between 0.53 and 0.87 along the entire gradient reflecting high species and structural turnover. (author)

Effect of the recent land use on the plant diversity and community structure of Omayed Biosphere Reserve, Egypt

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Dalia A. Ahmed

2015-07-01

Full Text Available The present study aims at describing and analysing the floristic composition and vegetation types, as well as determining the effect of recent land uses on the vegetation structure. It aims also at identifying the alien plants species and elucidating the impact of these species on the plant diversity and community structure of the study area. One hundred and ninety stands were selected monthly for this study, 145 species were recorded (69 perennials and 76 annuals related to 83 genera, 40 families in 9 identified habitats in El-Omayed Biosphere Reserve (coastal sand dunes, salt marshes, saline depression, non-saline depression, inland ridges, inland plateau, irrigation canals, road sides and cultivated lands. Therophytes were the most represented life form. Three habitat groups resulted after the application of TWINSPAN and DCA as classification and ordination techniques: 2 represented the natural habitats and one represented the urban and cultivated habitats. Group I represented coastal dunes and salt marshes GII: saline depressions, non-saline depressions, inland plateau and inland ridges and GIII: irrigation canals, road sides and cultivated lands. Coastal dunes had the highest species richness (α-diversity, followed by cultivated lands, while inland plateau had the lowest; but saline depressions had the highest species turnover (β-diversity. Non-saline depressions had the highest relative evenness, while saline depressions had the highest relative concentration of dominance. Coastal dunes had highest values of calcium carbonates and calcium ions, and salt marshes had the highest salinity, pH, potassium and sodium contents, but cultivated lands had the highest values of silt, clay and organic matter. The diagram resulting from CCA showed an influence of most soil variables, except nitrogen, calcium and potassium. Twenty two species were recorded for the first time in the study area. The recent land use (overgrazing, wood cutting and

Diversity reduces invasibility in experimental plant communities: the role of plant species

NARCIS (Netherlands)

Van Ruijven, J.; De Deyn, G.B.; Berendse, F.

2003-01-01

Several studies have presented experimental evidence that diversity reduces invasibility in grassland communities. The interpretation of these results has been disputed recently and it was proposed that sampling effects were responsible for the observed decrease of invasibility with diversity. The

Response of herbaceous plant community diversity and composition to overstorey harvest within riparian management zones in Northern Hardwoods

Science.gov (United States)

Eric K. Zenner; Michelle A. Martin; Brian J. Palik; Jerilynn E. Peck; Charles R. Blinn

2013-01-01

Partial timber harvest within riparian management zones (RMZs) may permit active management of riparian forests while protecting stream ecosystems, but impacts on herbaceous communities are poorly understood. We compared herbaceous plant community abundance, diversity and composition in RMZs along small streams in northern Minnesota, USA, among four treatments before...

The Diaphanous-related Formin FHOD1 associates with ROCK1 and promotes Src-dependent plasma membrane blebbing.

Science.gov (United States)

Hannemann, Sebastian; Madrid, Ricardo; Stastna, Jana; Kitzing, Thomas; Gasteier, Judith; Schönichen, André; Bouchet, Jerome; Jimenez, Alberto; Geyer, Matthias; Grosse, Robert; Benichou, Serge; Fackler, Oliver T

2008-10-10

Diaphanous-related formins (DRFs) mediate GTPase-triggered actin rearrangements to regulate central cellular processes, such as cell motility and cytokinesis. The DRF FHOD1 interacts with the Rho-GTPase Rac1 and mediates formation of actin stress fibers in its deregulated form; the physiologically relevant activities and molecular mechanisms of endogenous FHOD1, however, are still unknown. Here we report that FHOD1 physically associates via the N-terminal part of its FH2 domain with the central domain of ROCK1. Although FHOD1 does not affect the kinase activity of ROCK1, the DRF is an efficient substrate for phosphorylation by ROCK1. Co-expression of FHOD1 and ROCK1 results in the generation of nonapoptotic plasma membrane (PM) blebs, to which the DRF is efficiently recruited. Blebbing induced by FHOD1 and ROCK1 depends on F-actin integrity, the Rho-ROCK cascade, and Src activity and is reminiscent of the recently described PM blebs triggered by expression of Src homology 4 (SH4) domain PM targeting signals. Consistently, endogenous FHOD1 is required in SH4 domain expressing cells for efficient PM blebbing and rounded cell morphology in two-dimensional cultures or three-dimensional matrices, respectively. Efficient association of FHOD1 with ROCK1, as well as recruitment of the DRF to blebs, depends on Src activity, suggesting that the functional interaction between both proteins is regulated by Src. These results define a role for endogenous FHOD1 in SH4 domain-induced blebbing and suggest that its activity is regulated by ROCK1 in a Src-dependent manner.

Food plant diversity as broad-Scale Determinant of Avian Frugivore Richness

DEFF Research Database (Denmark)

Kissling, W. Daniel; Rahbek, Carsten; Böhning-Gaese, Katrin

2007-01-01

from niche assembly mechanisms (e.g. coevolutionary adaptations to fruit size, fruit colour or vertical stratification of fruit presentation) or, alternatively, from stochastic speciation-extinction processes. In any case, the close relationship between species richness of Ficus and avian frugivores......The causes of variation in animal species richness at large spatial scales are intensively debated. Here, we examine whether the diversity of food plants, contemporary climate and energy, or habitat heterogeneity determine species richness patterns of avian frugivores across sub-Saharan Africa....... Path models indicate that species richness of Ficus (their fruits being one of the major food resources for frugivores in the tropics) has the strongest direct effect on richness of avian frugivores, whereas the influences of variables related to water-energy and habitat heterogeneity are mainly...

Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.

Science.gov (United States)

Barik, Suvakanta; Kumar, Ashutosh; Sarkar Das, Shabari; Yadav, Sandeep; Gautam, Vibhav; Singh, Archita; Singh, Sharmila; Sarkar, Ananda K

2015-10-13

microRNAs (miRNAs), a class of endogenously produced small non-coding RNAs of 20-21 nt length, processed from precursor miRNAs, regulate many developmental processes by negatively regulating the target genes in both animals and plants. The coevolutionary pattern of a miRNA family and their targets underscores its functional conservation or diversification. The miR167 regulates various aspects of plant development in Arabidopsis by targeting ARF6 and ARF8. The evolutionary conservation or divergence of miR167s and their target genes are poorly understood till now. Here we show the evolutionary relationship among 153 MIR167 genes obtained from 33 diverse plant species. We found that out of the 153 of miR167 sequences retrieved from the "miRBase", 27 have been annotated to be processed from the 3' end, and have diverged distinctively from the other miR167s produced from 5' end. Our analysis reveals that gma-miR167h/i and mdm-miR167a are processed from 3' end and have evolved separately, diverged most resulting in novel targets other than their known ones, and thus led to functional diversification, especially in apple and soybean. We also show that mostly conserved miR167 sequences and their target AUXIN RESPONSE FACTORS (ARFs) have gone through parallel evolution leading to functional diversification among diverse plant species.

Plant diversity increases spatio?temporal niche complementarity in plant?pollinator interactions

OpenAIRE

Venjakob, Christine; Klein, Alexandra?Maria; Ebeling, Anne; Tscharntke, Teja; Scherber, Christoph

2016-01-01

Ongoing biodiversity decline impairs ecosystem processes, including pollination. Flower visitation, an important indicator of pollination services, is influenced by plant species richness. However, the spatio-temporal responses of different pollinator groups to plant species richness have not yet been analyzed experimentally. Here, we used an experimental plant species richness gradient to analyze plant-pollinator interactions with an unprecedented spatio-temporal resolution. We observed four...

Plant-conservative agriculture of acid and degraded Raña-grassland enhances diversity of the common soil mites (Oribatida)

Energy Technology Data Exchange (ETDEWEB)

Jorrín, J.; González-Fernández, P.

2016-11-01

The seminatural prairie of the Raña of Cañamero (Spain) is a degraded and unproductive agrosystem with acid and stony soils, and low coverage of xerophytic grasses. In a project about secondary reconversion of the raña-prairie to a more productive cropland, an experimental field (EF) was established to assess the effect on plot-productivity of the interaction between correction of soil pH (liming) with three cropping systems: a no-tilled and annually fertilized and improved prairies, and a conventionally-tilled forage crop. The EF model of management was designed as plant-conservative, because no herbicide was applied after seeding to preserve the post-emergence of wild herbs and the natural grass diversity of the prairie. Between 2008 and 2012, we analysed the effect of managing factors (initial conventional-tillage, fertilization, liming and cropping) and agricultural predictors (pH, C:N ratio, soil bulk density and herbaceous biomass) on the alpha(α)-diversity of one of the major group of soil animals, the oribatids. In relation to the raña-prairie, all EF-plots improved their soil bulk density (ρs) and herbaceous biomass (t/ha), and enhanced desirable α-diversity values (richness, abundance and community equity). We conclude that the plant-conservative model: i) do not affect statistically the species richness of the prairie; ii) the desirable α-diversity responses are negatively correlated with soil bulk density and positively with herbaceous biomass, and iii) the low input or minimum intervention model, of an initial and conventional till and annual fertilisation, is the threshold and optimal model of agricultural management to improving oribatids diversity of the raña-soil. (Author)

Antimicrobial biosynthetic potential and genetic diversity of endophytic actinomycetes associated with medicinal plants.

Science.gov (United States)

Gohain, Anwesha; Gogoi, Animesh; Debnath, Rajal; Yadav, Archana; Singh, Bhim P; Gupta, Vijai K; Sharma, Rajeev; Saikia, Ratul

2015-10-01

Endophytic actinomycetes are one of the primary groups that share symbiotic relationships with medicinal plants and are key reservoir of biologically active compounds. In this study, six selective medicinal plants were targeted for the first time for endophytic actinomycetes isolation from Gibbon Wild Life Sanctuary, Assam, India, during winter and summer and 76 isolates were obtained. The isolates were found to be prevalent in roots followed by stem and leaves. 16S rRNA gene sequence analysis revealed 16 genera, including rare genera, Verrucosispora, Isoptericola and Kytococcus, which have never been previously reported as endophytic. The genus Streptomyces (66%) was dominant in both seasons. Shannon's diversity index showed that Azadirachta indica (1.49), Rauwolfia serpentina (1.43) and Emblica officinalis (1.24) were relatively good habitat for endophytic actinomycetes. Antimicrobial strains showed prevalence of polyketide synthase (PKS) type-II (85%) followed by PKS type-I (14%) encoded in the genomes. Expression studies showed 12-fold upregulation of PKSII gene in seventh day of incubation for Streptomyces antibioticus (EAAG90). Our results emphasize that the actinomycetes assemblages within plant tissue exhibited biosynthetic systems encoding for important biologically active compounds. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Diversity of bacteria nesting the plant cover of north Sinai deserts, Egypt

Directory of Open Access Journals (Sweden)

Amira L. Hanna

2013-01-01

Full Text Available North Sinai deserts were surveyed for the predominant plant cover and for the culturable bacteria nesting their roots and shoots. Among 43 plant species reported, 13 are perennial (e.g. Fagonia spp., Pancratium spp. and 30 annuals (e.g. Bromus spp., Erodium spp.. Eleven species possessed rhizo-sheath, e.g. Cyperus capitatus, Panicum turgidum and Trisetaria koelerioides. Microbiological analyses demonstrated: the great diversity and richness of associated culturable bacteria, in particular nitrogen-fixing bacteria (diazotrophs; the majority of bacterial residents were of true and/or putative diazotrophic nature; the bacterial populations followed an increasing density gradient towards the root surfaces; sizeable populations were able to reside inside the root (endorhizosphere and shoot (endophyllosphere tissues. Three hundred bacterial isolates were secured from studied spheres. The majority of nitrogen-fixing bacilli isolates belonged to Bacillus megaterium, Bacillus pumilus, Bacillus polymexa, Bacillus macerans, Bacillus circulans and Bacillus licheniformis. The family Enterobacteriaceae represented by Enterobacter agglomerans, Enterobacter sackazakii, Enterobacter cloacae, Serratia adorifera, Serratia liquefaciens and Klebsiella oxytoca. The non-Enterobacteriaceae population was rich in Pantoae spp., Agrobacterium rdiobacter, Pseudomonas vesicularis, Pseudomonas putida, Stenotrophomonas maltophilia, Ochrobactrum anthropi, Sphingomonas paucimobilis and Chrysemonas luteola. Gluconacetobacter diazotrophicus were reported inside root and shoot tissues of a number of tested plants. The dense bacterial populations reported speak well to the very possible significant role played by the endophytic bacterial populations in the survival, in respect of nutrition and health, of existing plants. Such groups of diazotrophs are good candidates, as bio-preparates, to support the growth of future field crops grown in deserts of north Sinai and irrigated by the

Mapping Plant Diversity and Composition Across North Carolina Piedmont Forest Landscapes Using Lidar-Hyperspectral Remote Sensing

Science.gov (United States)

Hakkenberg, Christopher R.

Forest modification, from local stress to global change, has given rise to efforts to model, map, and monitor critical properties of forest communities like structure, composition, and diversity. Predictive models based on data from spatially-nested field plots and LiDAR-hyperspectral remote sensing systems are one particularly effective means towards the otherwise prohibitively resource-intensive task of consistently characterizing forest community dynamics at landscape scales. However, to date, most predictive models fail to account for actual (rather than idealized) species and community distributions, are unsuccessful in predicting understory components in structurally and taxonomically heterogeneous forests, and may suffer from diminished predictive accuracy due to incongruity in scale and precision between field plot samples, remotely-sensed data, and target biota of varying size and density. This three-part study addresses these and other concerns in the modeling and mapping of emergent properties of forest communities by shifting the scope of prediction from the individual or taxon to the whole stand or community. It is, after all, at the stand scale where emergent properties like functional processes, biodiversity, and habitat aggregate and manifest. In the first study, I explore the relationship between forest structure (a proxy for successional demographics and resource competition) and tree species diversity in the North Carolina Piedmont, highlighting the empirical basis and potential for utilizing forest structure from LiDAR in predictive models of tree species diversity. I then extend these conclusions to map landscape pattern in multi-scale vascular plant diversity as well as turnover in community-continua at varying compositional resolutions in a North Carolina Piedmont landscape using remotely-sensed LiDAR-hyperspectral estimates of topography, canopy structure, and foliar biochemistry. Recognizing that the distinction between correlation and

Global diversity and geography of soil fungi

Science.gov (United States)

Leho Tedersoo; Mohammad Bahram; Sergei Põlme; Urmas Kõljalg; Nourou S. Yorou; Ravi Wijesundera; Luis Villarreal Ruiz; Aida M. Vasco-Palacios; Pham Quang Thu; Ave Suija; Matthew E. Smith; Cathy Sharp; Erki Saluveer; Alessandro Saitta; Miguel Rosas; Taavi Riit; David Ratkowsky; Karin Pritsch; Kadri Põldmaa; Meike Piepenbring; Cherdchai Phosri; Marko Peterson; Kaarin Parts; Kadri Pärtel; Eveli Otsing; Eduardo Nouhra; André L. Njouonkou; R. Henrik Nilsson; Luis N. Morgado; Jordan Mayor; Tom W. May; Luiza Majukim; D. Jean Lodge; Su See Lee; Karl-Henrik Larsson; Petr Kohout; Kentaro Hosaka; Indrek Hiiesalu; Terry W. Henkel; Helery Harend; Liang-dong Guo; Alina Greslebin; Gwen Gretlet; Jozsef Geml; Genevieve Gates; William Dunstan; Chris Dunk; Rein Drenkhan; John Dearnaley; André De Kesel; Tan Dang; Xin Chen; Franz Buegger; Francis Q. Brearley; Gregory Bonito; Sten Anslan; Sandra Abell; Kessy Abarenkov

2014-01-01

Fungi play major roles in ecosystem processes, but the determinants of fungal diversity and biogeographic patterns remain poorly understood. Using DNA metabarcoding data from hundreds of globally distributed soil samples,we demonstrate that fungal richness is decoupled from plant diversity.The plant-to-fungus richness ratio declines exponentially toward the poles....

Species Richness and Functional Trait Diversity for Plants in Southern California's Green Infrastructure along a Climate Gradient

Science.gov (United States)

Rochford, M. E.; Ibsen, P.; Jenerette, D.

2016-12-01

Green infrastructure (GI) is greenery planted to absorb rainwater into the earth as an alternative to grey infrastructure, like storm drains. Not only does GI prevent flooding, but it also performs a number of ecosystem services, including increasing biodiversity, because it allows water to cycle through the environment naturally. Increased biodiversity in plant communities is said to help purify the air and improve the health and resilience of the plants themselves. I want to investigate these claims about GI's benefits by studying types of GI with slightly different functions. This will answer the questions 1) Are different types of green infrastructure's plant communities equally biodiverse in terms of functional trait diversity and species richness? 2) How does functional trait diversity and species richness differ along a temperature gradient in Southern California? To compare biodiversity, I must survey four different types of GI, urban parks, riparian zones, detention basins, and bioswales, in three cities in distinct climate regions. Detention basins are reservoirs lined with vegetation that collect water until it is absorbed into the soil. Bioswales are vegetated gutters that filter out pollutants in storm water. Unlike retention basins, they also add aesthetic value to an area. Even though parks are mainly for recreation and beatification rather than storm water management, they have plenty of permeable surface to absorb storm water. The types of GI that have high levels of interaction with humans should also have higher levels of maintenance. The results should follow the homogenization hypothesis and demonstrate that, regardless of climate, species richness should not differ much between highly maintained areas, like parks, in different cities. Otherwise, in GI that is not as manicured, species richness should be significantly different between cities and the different types of GI. Because types of GI selected vary in expected levels of human

Effects of large herbivores on grassland arthropod diversity.

Science.gov (United States)

van Klink, R; van der Plas, F; van Noordwijk, C G E Toos; WallisDeVries, M F; Olff, H

2015-05-01

Both arthropods and large grazing herbivores are important components and drivers of biodiversity in grassland ecosystems, but a synthesis of how arthropod diversity is affected by large herbivores has been largely missing. To fill this gap, we conducted a literature search, which yielded 141 studies on this topic of which 24 simultaneously investigated plant and arthropod diversity. Using the data from these 24 studies, we compared the responses of plant and arthropod diversity to an increase in grazing intensity. This quantitative assessment showed no overall significant effect of increasing grazing intensity on plant diversity, while arthropod diversity was generally negatively affected. To understand these negative effects, we explored the mechanisms by which large herbivores affect arthropod communities: direct effects, changes in vegetation structure, changes in plant community composition, changes in soil conditions, and cascading effects within the arthropod interaction web. We identify three main factors determining the effects of large herbivores on arthropod diversity: (i) unintentional predation and increased disturbance, (ii) decreases in total resource abundance for arthropods (biomass) and (iii) changes in plant diversity, vegetation structure and abiotic conditions. In general, heterogeneity in vegetation structure and abiotic conditions increases at intermediate grazing intensity, but declines at both low and high grazing intensity. We conclude that large herbivores can only increase arthropod diversity if they cause an increase in (a)biotic heterogeneity, and then only if this increase is large enough to compensate for the loss of total resource abundance and the increased mortality rate. This is expected to occur only at low herbivore densities or with spatio-temporal variation in herbivore densities. As we demonstrate that arthropod diversity is often more negatively affected by grazing than plant diversity, we strongly recommend considering the

Understory plant diversity in mixed and pure plantations of jatropha curcas vs. native vegetation in the lower-middle reaches of the lancang-meikong river watershed, china

International Nuclear Information System (INIS)

Ou, G.L.; Ma, H.C.; Tang, J.R.

2015-01-01

22 plots at the Xiaoheijiang base, located in the lower-middle reaches of the Lancang-Meikong River in China, were investigated to analyze the understory biodiversity of Jatropha curcas plantations. Two kinds of mixed modes of J. curcas (mixed plantation with Macadamia integrifolia and mixed plantation with shrub species) and a pure plantation of J. curcas were planted, while the native vegetation served as a control. The plots were distributed along the gradients of forest management, succession and elevation by CCA analysis. Species richness was not significantly different for the different types of plantation, but the evenness of species could be affected, especially for the total community and the understory by planting J. curcas. The diversity and evenness indices of species were affected for the mixed plantation with different proportions of M. integrifolia, especially for the shrub layer, the Shannon diversity index and Pilou evenness index showed significant differences. And for the different mixed shrub species, only the Shannon diversity index and Pilou evenness index were significantly different. Finally, from the perspective of biological diversity, J.curcas plantation with shrub species would be a recommended planting model for ecological restoration in a dry-hot valley area, while J. curcas plantation with M. integrifolia would be an effective planting model to balance crop yield and food security. (author)

Tree species diversity promotes aboveground carbon storage through functional diversity and functional dominance.

Science.gov (United States)

Mensah, Sylvanus; Veldtman, Ruan; Assogbadjo, Achille E; Glèlè Kakaï, Romain; Seifert, Thomas

2016-10-01

The relationship between biodiversity and ecosystem function has increasingly been debated as the cornerstone of the processes behind ecosystem services delivery. Experimental and natural field-based studies have come up with nonconsistent patterns of biodiversity-ecosystem function, supporting either niche complementarity or selection effects hypothesis. Here, we used aboveground carbon (AGC) storage as proxy for ecosystem function in a South African mistbelt forest, and analyzed its relationship with species diversity, through functional diversity and functional dominance. We hypothesized that (1) diversity influences AGC through functional diversity and functional dominance effects; and (2) effects of diversity on AGC would be greater for functional dominance than for functional diversity. Community weight mean (CWM) of functional traits (wood density, specific leaf area, and maximum plant height) were calculated to assess functional dominance (selection effects). As for functional diversity (complementarity effects), multitrait functional diversity indices were computed. The first hypothesis was tested using structural equation modeling. For the second hypothesis, effects of environmental variables such as slope and altitude were tested first, and separate linear mixed-effects models were fitted afterward for functional diversity, functional dominance, and both. Results showed that AGC varied significantly along the slope gradient, with lower values at steeper sites. Species diversity (richness) had positive relationship with AGC, even when slope effects were considered. As predicted, diversity effects on AGC were mediated through functional diversity and functional dominance, suggesting that both the niche complementarity and the selection effects are not exclusively affecting carbon storage. However, the effects were greater for functional diversity than for functional dominance. Furthermore, functional dominance effects were strongly transmitted by CWM of

Plant lectins: the ties that bind in root symbiosis and plant defense.

Science.gov (United States)

De Hoff, Peter L; Brill, Laurence M; Hirsch, Ann M

2009-07-01

Lectins are a diverse group of carbohydrate-binding proteins that are found within and associated with organisms from all kingdoms of life. Several different classes of plant lectins serve a diverse array of functions. The most prominent of these include participation in plant defense against predators and pathogens and involvement in symbiotic interactions between host plants and symbiotic microbes, including mycorrhizal fungi and nitrogen-fixing rhizobia. Extensive biological, biochemical, and molecular studies have shed light on the functions of plant lectins, and a plethora of uncharacterized lectin genes are being revealed at the genomic scale, suggesting unexplored and novel diversity in plant lectin structure and function. Integration of the results from these different types of research is beginning to yield a more detailed understanding of the function of lectins in symbiosis, defense, and plant biology in general.

Medicinal Plant Diversity and Inter-Cultural Interactions between Indigenous Guarani, Criollos and Polish Migrants in the Subtropics of Argentina

Science.gov (United States)

Kujawska, Monika; Hilgert, Norma I.; Keller, Héctor A.; Gil, Guillermo

2017-01-01

Numerous studies highlight the importance of phytotherapy for indigenous and non-indigenous people in different parts of the world. In this work we analyze the richness (number of species), diversity (plant identity and the number of illnesses for which it is used) and similarity of plant species and illnesses treated with them, in order to contribute new data and insight into the importance of plant medicines to the local medical systems of people living in Misiones province, in the subtropics of Argentina. Three sympatric groups were compared: Guarani Indians, Criollos (mestizos) and Polish migrants. Quantitative scrutiny was focused on both primary and secondary sources. The similarity and diversity of medicinal plants and uses between groups was calculated by applying the Sørensen quantitative coefficient and the Shannon-Wiener index, respectively. In order to identify the characteristic plant species used by each group, the Cultural Importance and Prevalence Value (CIPV) was calculated based on the species Indicator Value (IndVal), which combines a species relative abundance with its relative frequency of occurrence in the various groups, and modified according to the type of the analyzed data. The important finding is a great variation in the number of species used by the study groups. Altogether, 509 botanical species were registered: Guarani (397), Criollos (243) and Polish migrants (137). For all groups, the use of native medicinal plants prevailed. The Guarani appear to be the local experts in use of medicinal plants. There is the significant difference in the number of treated illnesses by each taxon among three groups. Criollos and Polish migrants exhibit the greatest similarity in illnesses treated with medicinal plants. These groups share a corpus of knowledge related to illness nosology, and have a symptomatic approach to illness treatment. The Guarani have an etiological approach to illness diagnosis and healing, which may be viewed as a barrier to

Medicinal Plant Diversity and Inter-Cultural Interactions between Indigenous Guarani, Criollos and Polish Migrants in the Subtropics of Argentina.

Science.gov (United States)

Kujawska, Monika; Hilgert, Norma I; Keller, Héctor A; Gil, Guillermo

2017-01-01

Numerous studies highlight the importance of phytotherapy for indigenous and non-indigenous people in different parts of the world. In this work we analyze the richness (number of species), diversity (plant identity and the number of illnesses for which it is used) and similarity of plant species and illnesses treated with them, in order to contribute new data and insight into the importance of plant medicines to the local medical systems of people living in Misiones province, in the subtropics of Argentina. Three sympatric groups were compared: Guarani Indians, Criollos (mestizos) and Polish migrants. Quantitative scrutiny was focused on both primary and secondary sources. The similarity and diversity of medicinal plants and uses between groups was calculated by applying the Sørensen quantitative coefficient and the Shannon-Wiener index, respectively. In order to identify the characteristic plant species used by each group, the Cultural Importance and Prevalence Value (CIPV) was calculated based on the species Indicator Value (IndVal), which combines a species relative abundance with its relative frequency of occurrence in the various groups, and modified according to the type of the analyzed data. The important finding is a great variation in the number of species used by the study groups. Altogether, 509 botanical species were registered: Guarani (397), Criollos (243) and Polish migrants (137). For all groups, the use of native medicinal plants prevailed. The Guarani appear to be the local experts in use of medicinal plants. There is the significant difference in the number of treated illnesses by each taxon among three groups. Criollos and Polish migrants exhibit the greatest similarity in illnesses treated with medicinal plants. These groups share a corpus of knowledge related to illness nosology, and have a symptomatic approach to illness treatment. The Guarani have an etiological approach to illness diagnosis and healing, which may be viewed as a barrier to

Genetic Diversity and Demographic History of Wild and Cultivated/Naturalised Plant Populations: Evidence from Dalmatian Sage (Salvia officinalis L., Lamiaceae)

Science.gov (United States)

Rešetnik, Ivana; Baričevič, Dea; Batîr Rusu, Diana; Carović-Stanko, Klaudija; Chatzopoulou, Paschalina; Dajić-Stevanović, Zora; Gonceariuc, Maria; Grdiša, Martina; Greguraš, Danijela; Ibraliu, Alban; Jug-Dujaković, Marija; Krasniqi, Elez; Liber, Zlatko; Murtić, Senad; Pećanac, Dragana; Radosavljević, Ivan; Stefkov, Gjoshe; Stešević, Danijela; Šoštarić, Ivan; Šatović, Zlatko

2016-01-01

Dalmatian sage (Salvia officinalis L., Lamiaceae) is a well-known aromatic and medicinal Mediterranean plant that is native in coastal regions of the western Balkan and southern Apennine Peninsulas and is commonly cultivated worldwide. It is widely used in the food, pharmaceutical and cosmetic industries. Knowledge of its genetic diversity and spatiotemporal patterns is important for plant breeding programmes and conservation. We used eight microsatellite markers to investigate evolutionary history of indigenous populations as well as genetic diversity and structure within and among indigenous and cultivated/naturalised populations distributed across the Balkan Peninsula. The results showed a clear separation between the indigenous and cultivated/naturalised groups, with the cultivated material originating from one restricted geographical area. Most of the genetic diversity in both groups was attributable to differences among individuals within populations, although spatial genetic analysis of indigenous populations indicated the existence of isolation by distance. Geographical structuring of indigenous populations was found using clustering analysis, with three sub-clusters of indigenous populations. The highest level of gene diversity and the greatest number of private alleles were found in the central part of the eastern Adriatic coast, while decreases in gene diversity and number of private alleles were evident towards the northwestern Adriatic coast and southern and eastern regions of the Balkan Peninsula. The results of Ecological Niche Modelling during Last Glacial Maximum and Approximate Bayesian Computation suggested two plausible evolutionary trajectories: 1) the species survived in the glacial refugium in southern Adriatic coastal region with subsequent colonization events towards northern, eastern and southern Balkan Peninsula; 2) species survived in several refugia exhibiting concurrent divergence into three genetic groups. The insight into genetic

The Effect of the Habitat Type on Soil and Plant Diversity Properties in Natural Ecosystems in the Northern Alborz (Case Study: Vaz Watershed

Directory of Open Access Journals (Sweden)

M. Salarvand

2016-09-01

Full Text Available This study aimed to compare plant species diversity indices (diversity and richness and some physico-chemical properties of soil among forest, ecotone and rangeland habitats. Vegetation sampling was done randomly at each habitat. One dominant community was selected in each habitat and one key area was distinguished in each community and 8×1m2 plots were randomly established in each key area. In each plot, the list of existing plants and cover percentage for each species were determined and soil samples were taken from depths of 0-10 cm. The Shannon-Wiener and Simpson diversity indices and Margalef and Menhinic richness indices were estimated using PAST software. Physical and chemical characteristics of the soil were compared at three sites by analysis of variance (One Way ANOVA. The results showed that the lowest and highest values of all species diversity and richness were occurred in forest and ecotone habitats, respectively. Bulk density, sand and pH value of soil were significantly the highest in the rangeland. The percentage of clay and organic carbon in forest habitat were higher than the two other habitats. This study revealed the importance of ecotone in preserving the diversity and species richness.

Density-independent mortality and increasing plant diversity are associated with differentiation of Taraxacum officinale into r- and K-strategists.

Directory of Open Access Journals (Sweden)

Annett Lipowsky

Full Text Available Differential selection between clones of apomictic species may result in ecological differentiation without mutation and recombination, thus offering a simple system to study adaptation and life-history evolution in plants.We caused density-independent mortality by weeding to colonizer populations of the largely apomictic Taraxacum officinale (Asteraceae over a 5-year period in a grassland biodiversity experiment (Jena Experiment. We compared the offspring of colonizer populations with resident populations deliberately sown into similar communities. Plants raised from cuttings and seeds of colonizer and resident populations were grown under uniform conditions. Offspring from colonizer populations had higher reproductive output, which was in general agreement with predictions of r-selection theory. Offspring from resident populations had higher root and leaf biomass, fewer flower heads and higher individual seed mass as predicted under K-selection. Plants grown from cuttings and seeds differed to some degree in the strength, but not in the direction, of their response to the r- vs. K-selection regime. More diverse communities appeared to exert stronger K-selection on resident populations in plants grown from cuttings, while we did not find significant effects of increasing species richness on plants grown from seeds.Differentiation into r- and K-strategists suggests that clones with characteristics of r-strategists were selected in regularly weeded plots through rapid colonization, while increasing plant diversity favoured the selection of clones with characteristics of K-strategists in resident populations. Our results show that different selection pressures may result in a rapid genetic differentiation within a largely apomictic species. Even under the assumption that colonizer and resident populations, respectively, happened to be r- vs. K-selected already at the start of the experiment, our results still indicate that the association of these

Density-independent mortality and increasing plant diversity are associated with differentiation of Taraxacum officinale into r- and K-strategists.

Science.gov (United States)

Lipowsky, Annett; Roscher, Christiane; Schumacher, Jens; Schmid, Bernhard

2012-01-01

Differential selection between clones of apomictic species may result in ecological differentiation without mutation and recombination, thus offering a simple system to study adaptation and life-history evolution in plants. We caused density-independent mortality by weeding to colonizer populations of the largely apomictic Taraxacum officinale (Asteraceae) over a 5-year period in a grassland biodiversity experiment (Jena Experiment). We compared the offspring of colonizer populations with resident populations deliberately sown into similar communities. Plants raised from cuttings and seeds of colonizer and resident populations were grown under uniform conditions. Offspring from colonizer populations had higher reproductive output, which was in general agreement with predictions of r-selection theory. Offspring from resident populations had higher root and leaf biomass, fewer flower heads and higher individual seed mass as predicted under K-selection. Plants grown from cuttings and seeds differed to some degree in the strength, but not in the direction, of their response to the r- vs. K-selection regime. More diverse communities appeared to exert stronger K-selection on resident populations in plants grown from cuttings, while we did not find significant effects of increasing species richness on plants grown from seeds. Differentiation into r- and K-strategists suggests that clones with characteristics of r-strategists were selected in regularly weeded plots through rapid colonization, while increasing plant diversity favoured the selection of clones with characteristics of K-strategists in resident populations. Our results show that different selection pressures may result in a rapid genetic differentiation within a largely apomictic species. Even under the assumption that colonizer and resident populations, respectively, happened to be r- vs. K-selected already at the start of the experiment, our results still indicate that the association of these strategies with

Species diversity of greenbelt plant in Taiyuan urban%太原市城区绿地植物物种多样性研究

Institute of Scientific and Technical Information of China (English)

赵立曦; 陶莉; 张先平

2012-01-01

【Objective】 To provide a scientific basis for the planning and construction of the urban greenbelts and the protection and utilization of the plant diversity in the city of Taiyuan,the species diversity of Taiyuan city＇s greenbelt plants was investigated.【Method】 An investigation based on community ecology was adopted which focused on the types,factors and vertical stratification of green land in Taiyuan urban area;and the plant diversity of the greenbelt was assessed comprehensively in terms of the importance value index,diversity index,evenness index and Shannon-Wiener index.【Result】 The results show that on the green lands in Taiyuan urban area there are 83 families,243 genera and 402 species of vascular plants,which are mainly Rosaceae,Asteraceae,Leguminosae sp.,Salicaceae and so on;the exotic species are slightly more than the local ones and the hemerophyte species are highly more than the wild plants;the vertically distributed stratification of green land mainly includes the tree-shrubs and the shrub-herbs,of which the diversity index,evenness index and Shannon-Wiener index are all high.Besides,among green lands of different functions,Forest Garden,the Appertain green land,Longtan Garden and Yumen River Garden are of high Shannon-Wiener index and diversity index.【Conclusion】 The species diversity of greenbelt plants in Taiyuan city is just at an average level,therefore greater efforts must be put to increase and protect the plant diversity of the green lands in Taiyuan city.%【目的】调查太原市城区绿地植物物种的多样性,为太原市城市绿地的规划建设和植物物种多样性的保护与利用提供科学依据。【方法】采用群落生态学的调查方法,调查太原城区绿地植物的组成、构成要素及垂直结构等,运用重要值、丰富度指数、均匀度指数和Shannon-Wiener指数综合评价绿地植物的物种多样性。【结果】太原城区绿地共有维管束植物83科243属402�

A 25 million year macrofloral record (Carboniferous-Permian) in the Czech part of the Intra-Sudetic Basin, biostratigraphy, plant diversity and vegetation patterns

Czech Academy of Sciences Publication Activity Database

Opluštil, S.; Šimůnek, Z.; Pšenička, J.; Bek, Jiří; Libertín, M.

2017-01-01

Roč. 244, SEP 2017 (2017), s. 241-307 ISSN 0034-6667 R&D Projects: GA ČR GAP210/12/2053 Institutional support: RVO:67985831 Keywords : Early Permian * floral zonation * Intra-Sudetic Basin * Pennsylvanian * plant diversity * plant taphonomy * vegetation patterns Subject RIV: DB - Geology ; Mineralogy OBOR OECD: Paleontology Impact factor: 1.817, year: 2016

Diversity and natural functions of antibiotics produced by beneficial and plant pathogenic bacteria.

Science.gov (United States)

Raaijmakers, Jos M; Mazzola, Mark

2012-01-01

Soil- and plant-associated environments harbor numerous bacteria that produce antibiotic metabolites with specific or broad-spectrum activities against coexisting microorganisms. The function and ecological importance of antibiotics have long been assumed to yield a survival advantage to the producing bacteria in the highly competitive but resource-limited soil environments through direct suppression. Although specific antibiotics may enhance producer persistence when challenged by competitors or predators in soil habitats, at subinhibitory concentrations antibiotics exhibit a diversity of other roles in the life history of the producing bacteria. Many processes modulated by antibiotics may be inherently critical to the producing bacterium, such as the acquisition of substrates or initiation of developmental changes that will ensure survival under stressful conditions. Antibiotics may also have roles in more complex interactions, including in virulence on host plants or in shaping the outcomes of multitrophic interactions. The innate functions of antibiotics to producing bacteria in their native ecosystem are just beginning to emerge, but current knowledge already reveals a breadth of activities well beyond the historical perspective of antibiotics as weaponry in microbial conflicts.

The rhizospheres of traditional medicinal plants in Panxi, China, host a diverse selection of actinobacteria with antimicrobial properties.

Science.gov (United States)

Zhao, Ke; Penttinen, Petri; Chen, Qiang; Guan, Tongwei; Lindström, Kristina; Ao, Xiaoling; Zhang, Lili; Zhang, Xiaoping

2012-06-01

Actinobacteria are a prolific source of antibiotics. Since the rate of discovery of novel antibiotics is decreasing, actinobacteria from unique environments need to be explored. In particular, actinobacterial biocontrol strains from medicinal plants need to be studied as they can be a source of potent antibiotics. We combined culture-dependent and culture-independent methods in analyzing the actinobacterial diversity in the rhizosphere of seven traditional medicinal plant species from Panxi, China, and assessed the antimicrobial activity of the isolates. Each of the plant species hosted a unique set of actinobacterial strains. Out of the 64 morphologically distinct isolates, half were Streptomyces sp., eight were Micromonospora sp., and the rest were members of 18 actinobacterial genera. In particular, Ainsliaea henryi Diels. hosted a diverse selection of actinobacteria, although the 16S ribosomal RNA (rRNA) sequence identity ranges of the isolates and of the 16S rRNA gene clone library were not congruent. In the clone library, 40% of the sequences were related to uncultured actinobacteria, emphasizing the need to develop isolation methods to assess the full potential of the actinobacteria. All Streptomyces isolates showed antimicrobial activity. While the antimicrobial activities of the rare actinobacteria were limited, the growth of Escherichia coli, Verticillium dahliae, and Fusarium oxysporum were inhibited only by rare actinobacteria, and strains related to Saccharopolyspora shandongensis and Streptosporangium roseum showed broad antimicrobial activity.

Diversity Strategies for Nuclear Power Plant Instrumentation and Control Systems

International Nuclear Information System (INIS)

Wood, Richard Thomas; Belles, Randy; Cetiner, Mustafa Sacit; Holcomb, David Eugene; Korsah, Kofi; Loebl, Andy; Mays, Gary T.; Muhlheim, Michael David; Mullens, James Allen; Poore, Willis P. III; Qualls, A.L.; Wilson, Thomas L.; Waterman, Michael E.

2010-01-01

This report presents the technical basis for establishing acceptable mitigating strategies that resolve diversity and defense-in-depth (D3) assessment findings and conform to U.S. Nuclear Regulatory Commission (NRC) requirements. The research approach employed to establish appropriate diversity strategies involves investigation of available documentation on D3 methods and experience from nuclear power and nonnuclear industries, capture of expert knowledge and lessons learned, determination of best practices, and assessment of the nature of common-cause failures (CCFs) and compensating diversity attributes. The research described in this report does not provide guidance on how to determine the need for diversity in a safety system to mitigate the consequences of potential CCFs. Rather, the scope of this report provides guidance to the staff and nuclear industry after a licensee or applicant has performed a D3 assessment per NUREG/CR-6303 and determined that diversity in a safety system is needed for mitigating the consequences of potential CCFs identified in the evaluation of the safety system design features. Succinctly, the purpose of the research described in this report was to answer the question, 'If diversity is required in a safety system to mitigate the consequences of potential CCFs, how much diversity is enough?' The principal results of this research effort have identified and developed diversity strategies, which consist of combinations of diversity attributes and their associated criteria. Technology, which corresponds to design diversity, is chosen as the principal system characteristic by which diversity criteria are grouped to form strategies. The rationale for this classification framework involves consideration of the profound impact that technology-focused design diversity provides. Consequently, the diversity usage classification scheme involves three families of strategies: (1) different technologies, (2) different approaches within the same

Diversity Strategies for Nuclear Power Plant Instrumentation and Control Systems

Energy Technology Data Exchange (ETDEWEB)

Wood, Richard Thomas [ORNL; Belles, Randy [ORNL; Cetiner, Mustafa Sacit [ORNL; Holcomb, David Eugene [ORNL; Korsah, Kofi [ORNL; Loebl, Andy [ORNL; Mays, Gary T [ORNL; Muhlheim, Michael David [ORNL; Mullens, James Allen [ORNL; Poore III, Willis P [ORNL; Qualls, A L [ORNL; Wilson, Thomas L [ORNL; Waterman, Michael E. [U.S. Nuclear Regulatory Commission

2010-02-01

This report presents the technical basis for establishing acceptable mitigating strategies that resolve diversity and defense-in-depth (D3) assessment findings and conform to U.S. Nuclear Regulatory Commission (NRC) requirements. The research approach employed to establish appropriate diversity strategies involves investigation of available documentation on D3 methods and experience from nuclear power and nonnuclear industries, capture of expert knowledge and lessons learned, determination of best practices, and assessment of the nature of common-cause failures (CCFs) and compensating diversity attributes. The research described in this report does not provide guidance on how to determine the need for diversity in a safety system to mitigate the consequences of potential CCFs. Rather, the scope of this report provides guidance to the staff and nuclear industry after a licensee or applicant has performed a D3 assessment per NUREG/CR-6303 and determined that diversity in a safety system is needed for mitigating the consequences of potential CCFs identified in the evaluation of the safety system design features. Succinctly, the purpose of the research described in this report was to answer the question, 'If diversity is required in a safety system to mitigate the consequences of potential CCFs, how much diversity is enough?' The principal results of this research effort have identified and developed diversity strategies, which consist of combinations of diversity attributes and their associated criteria. Technology, which corresponds to design diversity, is chosen as the principal system characteristic by which diversity criteria are grouped to form strategies. The rationale for this classification framework involves consideration of the profound impact that technology-focused design diversity provides. Consequently, the diversity usage classification scheme involves three families of strategies: (1) different technologies, (2) different approaches within

Experience matters: prior exposure to plant toxins enhances diversity of gut microbes in herbivores.

Science.gov (United States)

Kohl, Kevin D; Dearing, M D

2012-09-01

For decades, ecologists have hypothesised that exposure to plant secondary compounds (PSCs) modifies herbivore-associated microbial community composition. This notion has not been critically evaluated in wild mammalian herbivores on evolutionary timescales. We investigated responses of the microbial communities of two woodrat species (Neotoma bryanti and N. lepida). For each species, we compared experienced populations that independently converged to feed on the same toxic plant (creosote bush, Larrea tridentata) to naïve populations with no exposure to creosote toxins. The addition of dietary PSCs significantly altered gut microbial community structure, and the response was dependent on previous experience. Microbial diversity and relative abundances of several dominant phyla increased in experienced woodrats in response to PSCs; however, opposite effects were observed in naïve woodrats. These differential responses were convergent in experienced populations of both species. We hypothesise that adaptation of the foregut microbiota to creosote PSCs in experienced woodrats drives this differential response. © 2012 Blackwell Publishing Ltd/CNRS.

Spatial Patterns of Species Diversity and Phylogenetic Structure of Plant Communities in the Tianshan Mountains, Arid Central Asia

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Hong-Xiang Zhang

2017-12-01

Full Text Available The Tianshan Mountains, located in arid Central Asia, have a humid climate and are biodiversity hotspots. Here, we aimed to clarify whether the pattern of species diversity and the phylogenetic structure of plant communities is affected by environmental variables and glacial refugia. In this study, plant community assemblies of 17 research sites with a total of 35 sample plots were investigated at the grassland/woodland boundaries on the Tianshan Mountains. Community phylogeny of these plant communities was constructed based on two plant DNA barcode regions. The indices of phylogenetic diversity and phylogenetic community structure were calculated for these sample plots. We first estimated the correlation coefficients between species richness (SR and environmental variables as well as the presence of glacial refugia. We then mapped the significant values of indices of community phylogeny (PD, RPD, NRI, and NTI to investigate the correlation between community phylogeny and environmental structure or macrozones in the study area. The results showed that a significantly higher value of SR was obtained for the refugial groups than for the colonizing groups (P < 0.05; presence of refugia and environmental variables were highly correlated to the pattern of variation in SR. Indices of community phylogeny were not significantly different between refugial and colonizing regions. Comparison with the humid western part showed that plant communities in the arid eastern part of the Tianshan Mountains tended to display more significant phylogenetic overdispersion. The variation tendency of the PhyloSor index showed that the increase in macro-geographical and environmental distance did not influence obvious phylogenetic dissimilarities between different sample plots. In conclusion, glacial refugia and environmental factors profoundly influenced the pattern of SR, but community phylogenetic structure was not affected by glacial refugia among different plant

Phylogenetically diverse macrophyte community promotes species diversity of mobile epi-benthic invertebrates

Science.gov (United States)

Nakamoto, Kenta; Hayakawa, Jun; Kawamura, Tomohiko; Kodama, Masafumi; Yamada, Hideaki; Kitagawa, Takashi; Watanabe, Yoshiro

2018-07-01

Various aspects of plant diversity such as species diversity and phylogenetic diversity enhance the species diversity of associated animals in terrestrial systems. In marine systems, however, the effects of macrophyte diversity on the species diversity of associated animals have received little attention. Here, we sampled in a subtropical seagrass-seaweed mixed bed to elucidate the effect of the macrophyte phylogenetic diversity based on the taxonomic relatedness as well as the macrophyte species diversity on species diversity of mobile epi-benthic invertebrates. Using regression analyses for each macrophyte parameter as well as multiple regression analyses, we found that the macrophyte phylogenetic diversity (taxonomic diversity index: Delta) positively influenced the invertebrate species richness and diversity index (H‧). Although the macrophyte species richness and H‧ also positively influenced the invertebrate species richness, the best fit model for invertebrate species richness did not include them, suggesting that the macrophyte species diversity indirectly influenced invertebrate species diversity. Possible explanations of the effects of macrophyte Delta on the invertebrate species diversity were the niche complementarity effect and the selection effect. This is the first study which demonstrates that macrophyte phylogenetic diversity has a strong effect on the species diversity of mobile epi-benthic invertebrates.