WorldWideScience

Sample records for planaria

  1. Taxonomy Icon Data: Planaria [Taxonomy Icon

    Lifescience Database Archive (English)

    Full Text Available Planaria Dugesia japonica Platyhelminthes Dugesia_japonica_L.png Dugesia_japonica_NL.png Dugesia_jap...onica_S.png Dugesia_japonica_NS.png http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Dugesia+jap...onica&t=L http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Dugesia+japonica&t=NL http://biosciencedbc.j...p/taxonomy_icon/icon.cgi?i=Dugesia+japonica&t=S http://biosciencedbc.jp/taxonomy_...icon/icon.cgi?i=Dugesia+japonica&t=NS http://togodb.biosciencedbc.jp/togodb/view/taxonomy_icon_comment_en?species_id=124 ...

  2. The phyletic status of the genus Planaria (Platyhelminthes, Turbellaria, Tricladida)

    NARCIS (Netherlands)

    Ball, Ian R.; Gourbault, Nicole

    1978-01-01

    The amphiatlantic distribution of the genus Planaria is incompatible with our current hypothesis of the historical biogeography of freshwater planarians. New anatomical studies suggest the possibility that the genus is not strictly monophyletic; new karyological data are strongly corroborative of

  3. Application of Computational Methods in Planaria Research: A Current Update

    Directory of Open Access Journals (Sweden)

    Ghosh Shyamasree

    2017-07-01

    Full Text Available Planaria is a member of the Phylum Platyhelminthes including flatworms. Planarians possess the unique ability of regeneration from adult stem cells or neoblasts and finds importance as a model organism for regeneration and developmental studies. Although research is being actively carried out globally through conventional methods to understand the process of regeneration from neoblasts, biology of development, neurobiology and immunology of Planaria, there are many thought provoking questions related to stem cell plasticity, and uniqueness of regenerative potential in Planarians amongst other members of Phylum Platyhelminthes. The complexity of receptors and signalling mechanisms, immune system network, biology of repair, responses to injury are yet to be understood in Planaria. Genomic and transcriptomic studies have generated a vast repository of data, but their availability and analysis is a challenging task. Data mining, computational approaches of gene curation, bioinformatics tools for analysis of transcriptomic data, designing of databases, application of algorithms in deciphering changes of morphology by RNA interference (RNAi approaches, understanding regeneration experiments is a new venture in Planaria research that is helping researchers across the globe in understanding the biology. We highlight the applications of Hidden Markov models (HMMs in designing of computational tools and their applications in Planaria decoding their complex biology.

  4. Change of the regenerational activity of planaria under radiation and chemical pollution of aquatic environment

    International Nuclear Information System (INIS)

    Verushkina, G.N.; Gordeeva, I.V.

    2008-01-01

    A significant reduction of the regenerational activity under zinc chloride water pollution with strength from 0.01 to 2.0 mg/l and under the exposure of gamma-rays with range from 0.01 to 100 Gy has been experimentally ascertained, which defines hyper sensitization of the used rate to low pollution levels. A linear reduction of the regenerational activity of planaria under the increase of zinc salt concentration in the water has been detected. In dependable of gamma-rays dose effect of reduction of planarian's regenerational activity in the range of low doses from 0.01 to 1 Gy has been discovered

  5. Vertically- and horizontally-transmitted memories – the fading boundaries between regeneration and inheritance in planaria

    Directory of Open Access Journals (Sweden)

    Moran Neuhof

    2016-09-01

    Full Text Available The Weismann barrier postulates that genetic information passes only from the germline to the soma and not in reverse, thus providing an obstacle to the inheritance of acquired traits. Certain organisms such as planaria – flatworms that can reproduce through asymmetric fission – avoid the limitations of this barrier, thus blurring the distinction between the processes of inheritance and development. In this paper, we re-evaluate canonical ideas about the interaction between developmental, genetic and evolutionary processes through the lens of planaria. Biased distribution of epigenetic effects in asymmetrically produced parts of a regenerating organism could increase variation and therefore affect the species' evolution. The maintenance and fixing of somatic experiences, encoded via stable biochemical or physiological states, may contribute to evolutionary processes in the absence of classically defined generations. We discuss different mechanisms that could induce asymmetry between the two organisms that eventually develop from the regenerating parts, including one particularly fascinating source – the potential capacity of the brain to produce long-lasting epigenetic changes.

  6. Fine-scale differences in diel activity among nocturnal freshwater planarias (Platyhelminthes: Tricladida

    Directory of Open Access Journals (Sweden)

    Cicolani Bruno

    2011-04-01

    Full Text Available Abstract Background Although most freshwater planarias are well known photonegative organisms, their diel rhythms have never been quantified. Differences in daily activity rhythms may be particularly important for temperate-climate, freshwater planarias, which tend to overlap considerably in spatial distribution and trophic requirements. Methods Activity of stress-free, individually tested young adults of three common planarian species was recorded at 3-h intervals in a 10-d experiment under natural sunlight and photoperiod during autumnal equinox (D:L ~12:12. Individual activity status was averaged over the 10-d experiment, each tested individual thus serving as a true replicate. Twelve individuals per species were tested. Food was provided every 36 h, resulting in alternating day- and nighttime feeding events. Activity during the first post-feeding h was recorded and analyzed separately. Statistical procedures included ANOVAs, correlations, and second-order analyses of angles. Results Dugesia (= Girardia tigrina Girard 1850 exhibited clear nocturnal behavior, Dugesia (= Schmidtea polychroa Schmidt 1861 was predominantly but not exclusively nocturnal, and Polycelis tenuis Ijima 1884 was relatively more active from midnight through noon. Species-specific activity peaks were statistically similar, with peaks at dawn for P. tenuis and just before midnight for the two dugesiids; however, D. tigrina was comparatively more active in the early night hours, while D. polychroa was more active than D. tigrina during daytime. D. tigrina also responded less readily to daytime food addition. P. tenuis remained poorly active and unresponsive throughout the experiment. Individual variability in diel behavior was highest for D. polychroa and lowest for D. tigrina. P. tenuis's general low degree of activity and late activity peak in the experiment may be related to a strong reliance on external stimuli. Conclusions The tested species are mainly nocturnal

  7. The blue land planarian Caenoplana coerulea, an invader in Argentina La planaria terrestre azul Caenoplana coerulea, un invasor en Argentina

    Directory of Open Access Journals (Sweden)

    Lisandro Héctor Luis-Negrete

    2011-03-01

    Full Text Available The blue land planarian Caenoplana coerulea is reported from Argentina (Buenos Aires province. We found C. coerulea in the east central region of Argentina in anthropic environments. The specimens that we found have the characteristic of the species found in others regions; that is, a bluish dorsal surface with a yellow mid-dorsal stripe and eyes forming a single row around the anterior tip, clustered laterally. This is the first record of this species from the Neotropical Region, and together with Bipalium kewense are the only 2 species of exotic terrestrial planarians so far recorded in Argentina.La planaria terrestre azul Caenoplana coerulea se registra para el centro este de Argentina (provincia de Buenos Aires, en ambientes antropizados. Los ejemplares encontrados presentan las características de la especie registrada en otras regiones, con una superficie dorsal azulada y una hilera medio dorsal amarilla, y ojos formando una hilera alrededor del extremo anterior, agrupados lateralmente. Es la primera vez que se cita dicha especie en la Región Neotropical, y junto a Bipalium kewense son las únicas planarias terrestres exóticas registradas en Argentina.

  8. Methylisothiazolinone toxicity and inhibition of wound healing and regeneration in planaria.

    Science.gov (United States)

    Van Huizen, Alanna V; Tseng, Ai-Sun; Beane, Wendy S

    2017-10-01

    Methylisothiazolinone (MIT) is a common biocide used in cosmetic and industrial settings. Studies have demonstrated that MIT is a human sensitizer, to the extent that in 2013 MIT was named allergen of the year. Recently, we showed that MIT exposure in Xenopus laevis (the African clawed frog) inhibits wound healing and tail regeneration. However, it is unknown whether MIT affects these processes in other animals. Here, we investigated the effects of MIT exposure in planaria-non-parasitic freshwater flatworms able to regenerate all tissues after injury. Using a common research strain of Dugesia japonica, we determined that intact planarians exposed to 15μM MIT displayed both neuromuscular and epithelial-integrity defects. Furthermore, regenerating (head and tail) fragments exposed to 15μM MIT failed to close wounds or had significantly delayed wound healing. Planarian wounds normally close within 1h after injury. However, most MIT-exposed animals retained open wounds at 24h and subsequently died, and those few animals that were able to undergo delayed wound healing without dying exhibited abnormal regeneration. For instance, head regeneration was severely delayed or inhibited, with anterior structures such as eyes failing to form in newly produced tissues. These data suggest that MIT directly affects both wound healing and regeneration in planarians. Next, we investigated the ability of thiol-containing antioxidants to rescue planarian wound closure during MIT exposure. The data reveal both n-acetyl cysteine and glutathione were each able to fully rescue MIT inhibition of wound healing. Lastly, we established MIT toxicity levels by determining the LC 50 of 5 different planarian species: D. japonica, Schmidtea mediterranea, Girardia tigrina, Girardia dorotocephala, and Phagocata gracilis. Our LC 50 data revealed that concentrations as low as 39μM (4.5ppm) are lethal to planarians, with concentrations of just 5μM inhibiting wound healing, and suggest that phylogeny

  9. Freshwater planarians from Colombia. A revision of Fuhrmann’s types

    NARCIS (Netherlands)

    Ball, Ian R.

    1980-01-01

    The type material of Colombian species of freshwater triclads (Fuhrmann, 1914) is revised and the original descriptions corrected and amplified. Planaria polyorchis is conspecific with Dugesia festai (Borelli). Planaria longistriata is a typical Girardia species of the Dugesia (Girardia) tigrina

  10. Contribution for labelling study of cellular and molecular structures of biomedical interest with technetium 99

    International Nuclear Information System (INIS)

    Rebello, L.H.; Piotkwosky, M.C.; Pereira, J.A.A.; Boasquevisque, E.M.; Silva, J.R.M.; Reis, R.J.N.; Pires, E.T.; Bernardo-Filho, M.

    1992-01-01

    The methodologies for labelling bacteria, planaria and cercaria from schistosomiasis evolution cycle and in oxamniquine with technetium 99 m, developed in the Biomedical Center of Rio de Janeiro University and in the Research Center of National Institute of Cancer are shown. (C.G.C.)

  11. Characterization of an organ-specific differentiator substance

    International Nuclear Information System (INIS)

    Steele, V.E.

    1975-01-01

    Cell regeneration in planaria (Dugesia etrusca) was studied. An attempt was made to characterize a diffusible brain inhibitory substance, to elucidate its role in the maintenance of anterior-posterior polarity during head or tail regeneration, and to utilize its action in measuring the differentiative integrity of the stem cells following x-irradiation. (U.S.)

  12. Acute toxic responses of the freshwater planarian, Dugesia dorotocephala, to methylmercury

    Energy Technology Data Exchange (ETDEWEB)

    Best, J.B.; Morita, M.; Ragin, J.; Best, J. Jr.

    1981-07-01

    Toxic responses of planaria to various aquatic habitat concentrations of methylmercury chloride (MMC) were investigated. One hundred percent lethality occurred within 5 h in 2 ppM MMC, 24 h in 1 ppM MMC, and 5 days in 0.5 ppM MMC. No deaths occurred in 0.2 ppM MMC over a 10 day period, however, non-lethal toxic responses were observed. Varying degrees of head resorption, progressing caudally from the snout were observed. With continuing exposure, partial head regeneration and recovery toward more normal appearance occurred by 10 days. Teratogenic effects were observed in surgical decapitation experiments. Head regeneration was retarded in 0.1 and 0.2 ppM MMC. Malformations, visible lesions, or gross behavioral abnormalities were produced by 2 week exposure of planaria to concentrations of 20 ppB MMC or lower. (RJC)

  13. Labelling of the platyhelminth dugesia tigrina with sup(99m) technetium

    International Nuclear Information System (INIS)

    Bernardo Filho, M.; Pires, E.T.; Boasquevisque, E.M.; Hasson-Voloch, A.

    1989-01-01

    The study of the labelling of planaria with sup(99m)Tc shows that the incorporation of radioactivity in this platyhelminth increases with an increase in SnCl sub(2) concentration from 0.13 to 1.3 μM, reaching a plateau in the range of 1.3-130 μM them decreasing with 1300 μM. At concentrations of 1.3 and 13 μM SnCl sub(2), a stronger binding of sup(99m)Tc was obtained. The biological viability of the labelled planaria was not altered when the described methodology was used. The advantage of this new labelling technique is that it is possible to obtain a platyhjelminth preparation labelled with a radionuclide that is very cheap, is easily available and is a gamma emitter with a photon energy of 140 KeV. (author)

  14. Planarians as a model of aging to study the interaction between stem cells and senescent cells in vivo

    Directory of Open Access Journals (Sweden)

    Patrick M. Perrigue

    2015-12-01

    Full Text Available The depletion of stem cell pools and the accumulation of senescent cells in animal tissues are linked to aging. Planarians are invertebrate flatworms and are unusual in that their stem cells, called neoblasts, are constantly replacing old and dying cells. By eliminating neoblasts in worms via irradiation, the biological principles of aging are exposed in the absence of wound healing and regeneration, making planaria a powerful tool for aging research.

  15. [The molecular genetic typification of planarians in the genus Bdellocephala (Dendrocoelidae, Tricladida, Turbellaria) from Lake Baikal with an assessment of their species diversity].

    Science.gov (United States)

    Kuznedelov, K D; Novikova, O A; Naumova, T V

    2000-01-01

    Baikal planaria from genus Bdellocephala were typified using rDNA locus coding 5'--end domain of 18S ribosome RNA. Five colour forms of 24 possible variants that differ in diapason 0-1.3% of genotype were determined by comparative analysis of nucleotide sequences. The authors use back colour--one of the most variable and typical character in the given group--to collect material for investigation. It allows to minimize the size of investigation sample and at the same time to cover maximum variability of Bdellocephala. One of the positive result of molecular typification of colour forms was a discovery of unique individuals that belong to new species. Karyological analysis of colour forms shows variations in chromosome numbers that divide planaria into 3 groups (2n = 20, 24, 26). Comparative analysis of morphological and ecological characters and karyotypes of some forms united by the same genotype allows to distinguish them as separate species. Criteria of modern phenetic system of Baikal planaria are discussed.

  16. BIO-ORGANIC CHEMISTRY QUARTERLY REPORT. December 1962 throughFebruary 1963

    Energy Technology Data Exchange (ETDEWEB)

    Various

    1963-03-29

    This report covers the following titles: (1) A versatile solvent to replace phenol for the paper chromatography of radioactive intermediary metabolites; (2) Chromatography of plant lipids on alumina paper; (3) Quinone and pigment composition of chloroplasts and quantasomes from Spinacea oleracea; (4) The lipid composition of chloroplast lamellae from Spinacea oleracea; (5) Metal chelates and photochemistry of flavins; (6) Photoinduced ESR in some solutions of organic electron donors and acceptors; (7) Fluorescence of oriented dye-macromolecule complexes--Theoretical study; (8) Formation of adenine by electron irradiation of methane, ammonia, and water; (9) Uptake of organic compounds by planarians; (10) The planaria: Absorption spectrum, cell disaggregation, and studies on homogenates.

  17. Limnologic-geologic excursion in the territory of the lower Erft River

    Energy Technology Data Exchange (ETDEWEB)

    Friedrich, G.; Thome, K.N.

    1976-01-01

    The geography and hydrology of the area of the excursion are described. There is much damage due to brown coal strip mining operations. Ground water was drained through a canal leading to the Erft River. The water in nearby springs is rich in Fe which repels plant life. The canal contains only a few blue algae (Oscillatoria splendida) and filamentous green algae (Ulothrix tenerrima) which tolerate high Fe concentrations. The Erft shore plant population includes Sparganium erectum, Potamogeton natans, P. pectinatus and Ranunculus fluitans. On flowering plants and stones, diatoms, various green algae (Cladophora glomerata, Stigeoclonium tenue, Oedogonium capillare) and the tropical red alga Compsopogon hookeri were found. The macrozoobenthos is composed mainly of snails (Bithynia tenaculata, Lumnaea ovata, Physa fontinalis, P. acuta and worms of North American origin (Dugesia tifrina, Dendrocoelum lacteum and Planaria lugubris). The Isopoda included Asellus coxalis and A. aquaticus. Leeches (Herpobdella octoculata) and insect larvae (Chironomids, Limnephilids) were also found.

  18. Modeling planarian regeneration: a primer for reverse-engineering the worm.

    Directory of Open Access Journals (Sweden)

    Daniel Lobo

    Full Text Available A mechanistic understanding of robust self-assembly and repair capabilities of complex systems would have enormous implications for basic evolutionary developmental biology as well as for transformative applications in regenerative biomedicine and the engineering of highly fault-tolerant cybernetic systems. Molecular biologists are working to identify the pathways underlying the remarkable regenerative abilities of model species that perfectly regenerate limbs, brains, and other complex body parts. However, a profound disconnect remains between the deluge of high-resolution genetic and protein data on pathways required for regeneration, and the desired spatial, algorithmic models that show how self-monitoring and growth control arise from the synthesis of cellular activities. This barrier to progress in the understanding of morphogenetic controls may be breached by powerful techniques from the computational sciences-using non-traditional modeling approaches to reverse-engineer systems such as planaria: flatworms with a complex bodyplan and nervous system that are able to regenerate any body part after traumatic injury. Currently, the involvement of experts from outside of molecular genetics is hampered by the specialist literature of molecular developmental biology: impactful collaborations across such different fields require that review literature be available that presents the key functional capabilities of important biological model systems while abstracting away from the often irrelevant and confusing details of specific genes and proteins. To facilitate modeling efforts by computer scientists, physicists, engineers, and mathematicians, we present a different kind of review of planarian regeneration. Focusing on the main patterning properties of this system, we review what is known about the signal exchanges that occur during regenerative repair in planaria and the cellular mechanisms that are thought to underlie them. By establishing an

  19. RUNX in Invertebrates.

    Science.gov (United States)

    Hughes, S; Woollard, A

    2017-01-01

    Runx genes have been identified in all metazoans and considerable conservation of function observed across a wide range of phyla. Thus, insight gained from studying simple model organisms is invaluable in understanding RUNX biology in higher animals. Consequently, this chapter will focus on the Runx genes in the diploblasts, which includes sea anemones and sponges, as well as the lower triploblasts, including the sea urchin, nematode, planaria and insect. Due to the high degree of functional redundancy amongst vertebrate Runx genes, simpler model organisms with a solo Runx gene, like C. elegans, are invaluable systems in which to probe the molecular basis of RUNX function within a whole organism. Additionally, comparative analyses of Runx sequence and function allows for the development of novel evolutionary insights. Strikingly, recent data has emerged that reveals the presence of a Runx gene in a protist, demonstrating even more widespread occurrence of Runx genes than was previously thought. This review will summarize recent progress in using invertebrate organisms to investigate RUNX function during development and regeneration, highlighting emerging unifying themes.

  20. The natural compound sanguinarine perturbs the regenerative capabilities of planarians.

    Science.gov (United States)

    Balestrini, Linda; Di Donfrancesco, Alessia; Rossi, Leonardo; Marracci, Silvia; Isolani, Maria E; Bianucci, Anna M; Batistoni, Renata

    2017-01-01

    The natural alkaloid sanguinarine has remarkable therapeutic properties and has been used for centuries as a folk remedy. This compound exhibits interesting anticancer properties and is currently receiving attention as a potential chemotherapeutic agent. Nevertheless, limited information exists regarding its safety for developing organisms. Planarians are an animal model known for their extraordinary stem cell-based regenerative capabilities and are increasingly used for toxicological and pharmacological studies. Here, we report that sanguinarine, at micromolar concentrations, perturbs the regeneration process in the planarian Dugesia japonica. We show that sanguinarine exposure causes defects during anterior regeneration and visual system recovery, as well as anomalous remodelling of pre-existing structures. Investigating the effects of sanguinarine on stem cells, we found that sanguinarine perturbs the transcriptional profile of early and late stem cell progeny markers. Our results indicate that sanguinarine exposure alters cell dynamics and induces apoptosis without affecting cell proliferation. Finally, sanguinarine exposure influences the expression level of H + , K + -ATPase α subunit, a gene of the P-type-ATPase pump family which plays a crucial role during anterior regeneration in planaria. On the whole, our data reveal that sanguinarine perturbs multiple mechanisms which regulate regeneration dynamics and contribute to a better understanding of the safety profile of this alkaloid in developing organisms.

  1. SMED-TLX-1 (NR2E1) is critical for tissue and body plan maintenance in Schmidtea mediterranea in fasting/feeding cycles.

    Science.gov (United States)

    Raška, O; Kostrouchová, V; Behenský, F; Yilma, P; Saudek, V; Kostrouch, Z; Kostrouchová, M

    2011-01-01

    Nuclear receptors (NRs), or nuclear hormone receptors (NHRs), are transcription factors that regulate development and metabolism of most if not all animal species. Their regulatory networks include conserved mechanisms that are shared in-between species as well as mechanisms that are restricted to certain phyla or even species. In search for conserved members of the NHR family in Schmidtea mediterranea, we identified a molecular signature of a class of NRs, NR2E1, in the S. mediterranea genome and cloned its complete cDNA coding sequence. The derived amino acid sequence shows a high degree of conservation of both DNA-binding domain and ligand- binding domain and a remarkably high homology to vertebrate NR2E1 and C. elegans NHR-67. Quantitative PCR detected approximately ten-fold higher expression of Smed-tlx-1 in the proximal part of the head compared to the tail region. The expression of Smed-tlx-1 is higher during fed state than during fasting. Smed-tlx-1 down-regulation by RNA interference affects the ability of the animals to maintain body plan and induces defects of brain, eyes and body shape during fasting and re-growing cycles. These results suggest that SMED-TLX-1 is critical for tissue and body plan maintenance in planaria.

  2. Motif enrichment tool.

    Science.gov (United States)

    Blatti, Charles; Sinha, Saurabh

    2014-07-01

    The Motif Enrichment Tool (MET) provides an online interface that enables users to find major transcriptional regulators of their gene sets of interest. MET searches the appropriate regulatory region around each gene and identifies which transcription factor DNA-binding specificities (motifs) are statistically overrepresented. Motif enrichment analysis is currently available for many metazoan species including human, mouse, fruit fly, planaria and flowering plants. MET also leverages high-throughput experimental data such as ChIP-seq and DNase-seq from ENCODE and ModENCODE to identify the regulatory targets of a transcription factor with greater precision. The results from MET are produced in real time and are linked to a genome browser for easy follow-up analysis. Use of the web tool is free and open to all, and there is no login requirement. ADDRESS: http://veda.cs.uiuc.edu/MET/. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

  3. Inform: Efficient Information-Theoretic Analysis of Collective Behaviors

    Directory of Open Access Journals (Sweden)

    Douglas G. Moore

    2018-06-01

    Full Text Available The study of collective behavior has traditionally relied on a variety of different methodological tools ranging from more theoretical methods such as population or game-theoretic models to empirical ones like Monte Carlo or multi-agent simulations. An approach that is increasingly being explored is the use of information theory as a methodological framework to study the flow of information and the statistical properties of collectives of interacting agents. While a few general purpose toolkits exist, most of the existing software for information theoretic analysis of collective systems is limited in scope. We introduce Inform, an open-source framework for efficient information theoretic analysis that exploits the computational power of a C library while simplifying its use through a variety of wrappers for common higher-level scripting languages. We focus on two such wrappers here: PyInform (Python and rinform (R. Inform and its wrappers are cross-platform and general-purpose. They include classical information-theoretic measures, measures of information dynamics and information-based methods to study the statistical behavior of collective systems, and expose a lower-level API that allow users to construct measures of their own. We describe the architecture of the Inform framework, study its computational efficiency and use it to analyze three different case studies of collective behavior: biochemical information storage in regenerating planaria, nest-site selection in the ant Temnothorax rugatulus, and collective decision making in multi-agent simulations.

  4. WD60/FAP163 is a dynein intermediate chain required for retrograde intraflagellar transport in cilia

    Science.gov (United States)

    Patel-King, Ramila S.; Gilberti, Renée M.; Hom, Erik F. Y.; King, Stephen M.

    2013-01-01

    Retrograde intraflagellar transport (IFT) is required for assembly of cilia. We identify a Chlamydomonas flagellar protein (flagellar-associated protein 163 [FAP163]) as being closely related to the D1bIC(FAP133) intermediate chain (IC) of the dynein that powers this movement. Biochemical analysis revealed that FAP163 is present in the flagellar matrix and is actively trafficked by IFT. Furthermore, FAP163 copurified with D1bIC(FAP133) and the LC8 dynein light chain, indicating that it is an integral component of the retrograde IFT dynein. To assess the functional role of FAP163, we generated an RNA interference knockdown of the orthologous protein (WD60) in planaria. The Smed-wd60(RNAi) animals had a severe ciliary assembly defect that dramatically compromised whole-organism motility. Most cilia were present as short stubs that had accumulated large quantities of IFT particle–like material between the doublet microtubules and the membrane. The few remaining approximately full-length cilia had a chaotic beat with a frequency reduced from 24 to ∼10 Hz. Thus WD60/FAP163 is a dynein IC that is absolutely required for retrograde IFT and ciliary assembly. PMID:23864713

  5. Identification and Actions of a Novel Third Maresin Conjugate in Tissue Regeneration: MCTR3.

    Directory of Open Access Journals (Sweden)

    Jesmond Dalli

    Full Text Available Maresin conjugates in tissue regeneration (MCTR are a new family of evolutionarily conserved chemical signals that orchestrate host responses to promote tissue regeneration and resolution of infections. Herein, we identified the novel MCTR3 and established rank order potencies and matched the stereochemistries of MCTR1, MCTR2 and MCTR3 using material prepared by total organic synthesis and mediators isolated from both mouse and human systems. MCTR3 was produced from endogenous substrate by E. coli activated human macrophages and identified in sepsis patients. Each of the three synthetic MCTR dose-dependently (1-100 nM accelerated tissue regeneration in planaria by 0.6-0.9 days. When administered at the onset or peak of inflammation, each of the MCTR promoted resolution of E. coli infections in mice. They increased bacterial phagocytosis by exudate leukocytes (~15-50%, limited neutrophil infiltration (~20-50%, promoted efferocytosis (~30% and reduced eicosanoids. MCTR1 and MCTR2 upregulated human neutrophil and macrophage phagocytic responses where MCTR3 also proved to possess potent actions. These results establish the complete stereochemistry and rank order potencies for MCTR1, MCTR2 and MCTR3 that provide novel resolution moduli in regulating host responses to clear infections and promote tissue regeneration.

  6. Labelling of biological structures with technetium 99 m

    International Nuclear Information System (INIS)

    Bernardo Filho, M.

    1988-01-01

    The labelling of red blood cells (RBC) with technetium 99m ( 99m Tc) depends on several factors, as the stannous ion (Sn ++ ) concentration, the time and temperature of incubation, the anticoagulant utilized, the presence of plasma proteins (PP) and others. Although the blinding of 99m Tc with hemoglobin and PP are similar, they appear to have specific characteristics as demonstrated by precipitation with alcohol, acetone, trichloroacetic acid, hydrochloric acid and mercury chloride. The bacterial cultures labeled with Technetium- 99m , at optimal Sn ++ ion concentration, presents a large stability and their viability is not altered by this treatment. The electrophoretic mobility, the hydrophobicity, the cationized ferritin distribution and the adherence to human buccal epithelial cells are not modified either. The possibility of labelling with 99m Tc of planaria and cercariae of Schistossoma mansoni evaluative cycle increases the utilization of this radionuclide to an experimental level. The results described with the labelling of these biological structures with 99m Tc demonstrated that stable labeled and viable operations are obtained. (author)

  7. Optically sectioned in vivo imaging with speckle illumination HiLo microscopy

    Science.gov (United States)

    Lim, Daryl; Ford, Tim N.; Chu, Kengyeh K.; Mertz, Jerome

    2011-01-01

    We present a simple wide-field imaging technique, called HiLo microscopy, that is capable of producing optically sectioned images in real time, comparable in quality to confocal laser scanning microscopy. The technique is based on the fusion of two raw images, one acquired with speckle illumination and another with standard uniform illumination. The fusion can be numerically adjusted, using a single parameter, to produce optically sectioned images of varying thicknesses with the same raw data. Direct comparison between our HiLo microscope and a commercial confocal laser scanning microscope is made on the basis of sectioning strength and imaging performance. Specifically, we show that HiLo and confocal 3-D imaging of a GFP-labeled mouse brain hippocampus are comparable in quality. Moreover, HiLo microscopy is capable of faster, near video rate imaging over larger fields of view than attainable with standard confocal microscopes. The goal of this paper is to advertise the simplicity, robustness, and versatility of HiLo microscopy, which we highlight with in vivo imaging of common model organisms including planaria, C. elegans, and zebrafish.

  8. Crayfish Self-Administer Amphetamine in a Spatially Contingent Task

    Directory of Open Access Journals (Sweden)

    Udita Datta

    2018-05-01

    Full Text Available Natural reward is an essential element of any organism’s ability to adapt to environmental variation. Its underlying circuits and mechanisms guide the learning process as they help associate an event, or cue, with the perception of an outcome’s value. More generally, natural reward serves as the fundamental generator of all motivated behavior. Addictive plant alkaloids are able to activate this circuitry in taxa ranging from planaria to humans. With modularly organized nervous systems and confirmed vulnerabilities to human drugs of abuse, crayfish have recently emerged as a compelling model for the study of the addiction cycle, including psychostimulant effects, sensitization, withdrawal, reinstatement, and drug reward in conditioned place preference paradigms. Here we extend this work with the demonstration of a spatially contingent, operant drug self-administration paradigm for amphetamine. When the animal enters a quadrant of the arena with a particular textured substrate, a computer-based control system delivers amphetamine through an indwelling fine-bore cannula. Resulting reward strength, dose-response, and the time course of operant conditioning were assessed. Individuals experiencing the drug contingent on their behavior, displayed enhanced rates of operant responses compared to that of their yoked (non-contingent counterparts. Application of amphetamine near the supra-esophageal ganglion elicited stronger and more robust increases in operant responding than did systemic infusions. This work demonstrates automated implementation of a spatially contingent self-administration paradigm in crayfish, which provides a powerful tool to explore comparative perspectives in drug-sensitive reward, the mechanisms of learning underlying the addictive cycle, and phylogenetically conserved vulnerabilities to psychostimulant compounds.

  9. Ion channel signaling influences cellular proliferation and phagocyte activity during axolotl tail regeneration.

    Science.gov (United States)

    Franklin, Brandon M; Voss, S Randal; Osborn, Jeffrey L

    2017-08-01

    Little is known about the potential for ion channels to regulate cellular behaviors during tissue regeneration. Here, we utilized an amphibian tail regeneration assay coupled with a chemical genetic screen to identify ion channel antagonists that altered critical cellular processes during regeneration. Inhibition of multiple ion channels either partially (anoctamin1/Tmem16a, anoctamin2/Tmem16b, K V 2.1, K V 2.2, L-type Ca V channels and H/K ATPases) or completely (GlyR, GABA A R, K V 1.5 and SERCA pumps) inhibited tail regeneration. Partial inhibition of tail regeneration by blocking the calcium activated chloride channels, anoctamin1&2, was associated with a reduction of cellular proliferation in tail muscle and mesenchymal regions. Inhibition of anoctamin 1/2 also altered the post-amputation transcriptional response of p44/42 MAPK signaling pathway genes, including decreased expression of erk1/erk2. We also found that complete inhibition via voltage gated K + channel blockade was associated with diminished phagocyte recruitment to the amputation site. The identification of H + pumps as required for axolotl tail regeneration supports findings in Xenopus and Planaria models, and more generally, the conservation of ion channels as regulators of tissue regeneration. This study provides a preliminary framework for an in-depth investigation of the mechanistic role of ion channels and their potential involvement in regulating cellular proliferation and other processes essential to wound healing, appendage regeneration, and tissue repair. Copyright © 2017 Elsevier B.V. All rights reserved.

  10. The use of invertebrates as indicators of environmental change in alpine rivers and lakes

    International Nuclear Information System (INIS)

    Khamis, K.; Hannah, D.M.; Brown, L.E.; Tiberti, R.; Milner, A.M.

    2014-01-01

    In alpine regions climatic change will alter the balance between water sources (rainfall, ice-melt, snowmelt, and groundwater) for aquatic systems, particularly modifying the relative contributions of meltwater, groundwater and rain to both rivers and lakes. While these changes are expected to have implications for alpine aquatic ecosystems, little is known about potential ecological tipping points and associated indicator taxa. We examined changes in biotic communities along a gradient of glacier influence for two study systems: (1) a stream network in the French Pyrénées; and (2) a network of lakes in the Italian Alps, with the aim of identifying potential indicator taxa (macroinvertebrates and zooplankton) of glacier retreat in these environments. To assess parallels in biotic responses across streams and lakes, both primary data and findings from other publications were synthesised. Using TITAN (Threshold Indicator Taxa ANalysis) changes in community composition of river taxa were identified at thresholds of < 5.1% glacier cover and < 66.6% meltwater contribution. Below these thresholds the loss of cold stenothermic benthic invertebrate taxa, Diamesa spp. and the Pyrenean endemic Rhyacophila angelieri was apparent. Some generalist taxa including Protonemura sp., Perla grandis, Baetis alpinus, Rhithrogena loyolaea and Microspectra sp. increased when glacier cover was < 2.7% and < 52% meltwater. Patterns were not as distinct for the alpine lakes, due to fewer sampling sites; however, Daphnia longispina grp. and the benthic invertebrate groups Plectopera and Planaria were identified as potential indicator taxa. While further work is required to assess potential indicator taxa for alpine lake systems, findings from alpine river systems were consistent between methods for assessing glacier influence (meltwater contribution/glacier cover). Hence, it is clear that TITAN could become a useful management tool, enabling: (i) the identification of taxa particularly

  11. The use of invertebrates as indicators of environmental change in alpine rivers and lakes

    Energy Technology Data Exchange (ETDEWEB)

    Khamis, K.; Hannah, D.M. [School of Geography Earth and Environmental Science, University of Birmingham, Birmingham B15 2TT (United Kingdom); Brown, L.E. [School of Geography/water@leeds, University of Leeds, Woodhouse Lane, Leeds LS2 9JT (United Kingdom); Tiberti, R. [DSTA, Dipartimento di Scienze della Terra e dell' Ambiente, University of Pavia, Via Ferrata 9, 27100 Pavia (Italy); Alpine Wildlife Research Centre, Gran Paradiso National Park, Degioz 11, I-1101 Valsavarenche, Aosta (Italy); Milner, A.M., E-mail: a.m.milner@bham.ac.uk [School of Geography Earth and Environmental Science, University of Birmingham, Birmingham B15 2TT (United Kingdom); Institute of Arctic Biology, University of Alaska, Fairbanks, AK 99775 (United States)

    2014-09-15

    In alpine regions climatic change will alter the balance between water sources (rainfall, ice-melt, snowmelt, and groundwater) for aquatic systems, particularly modifying the relative contributions of meltwater, groundwater and rain to both rivers and lakes. While these changes are expected to have implications for alpine aquatic ecosystems, little is known about potential ecological tipping points and associated indicator taxa. We examined changes in biotic communities along a gradient of glacier influence for two study systems: (1) a stream network in the French Pyrénées; and (2) a network of lakes in the Italian Alps, with the aim of identifying potential indicator taxa (macroinvertebrates and zooplankton) of glacier retreat in these environments. To assess parallels in biotic responses across streams and lakes, both primary data and findings from other publications were synthesised. Using TITAN (Threshold Indicator Taxa ANalysis) changes in community composition of river taxa were identified at thresholds of < 5.1% glacier cover and < 66.6% meltwater contribution. Below these thresholds the loss of cold stenothermic benthic invertebrate taxa, Diamesa spp. and the Pyrenean endemic Rhyacophila angelieri was apparent. Some generalist taxa including Protonemura sp., Perla grandis, Baetis alpinus, Rhithrogena loyolaea and Microspectra sp. increased when glacier cover was < 2.7% and < 52% meltwater. Patterns were not as distinct for the alpine lakes, due to fewer sampling sites; however, Daphnia longispina grp. and the benthic invertebrate groups Plectopera and Planaria were identified as potential indicator taxa. While further work is required to assess potential indicator taxa for alpine lake systems, findings from alpine river systems were consistent between methods for assessing glacier influence (meltwater contribution/glacier cover). Hence, it is clear that TITAN could become a useful management tool, enabling: (i) the identification of taxa particularly

  12. Theoretical computer science and the natural sciences

    Science.gov (United States)

    Marchal, Bruno

    2005-12-01

    I present some fundamental theorems in computer science and illustrate their relevance in Biology and Physics. I do not assume prerequisites in mathematics or computer science beyond the set N of natural numbers, functions from N to N, the use of some notational conveniences to describe functions, and at some point, a minimal amount of linear algebra and logic. I start with Cantor's transcendental proof by diagonalization of the non enumerability of the collection of functions from natural numbers to the natural numbers. I explain why this proof is not entirely convincing and show how, by restricting the notion of function in terms of discrete well defined processes, we are led to the non algorithmic enumerability of the computable functions, but also-through Church's thesis-to the algorithmic enumerability of partial computable functions. Such a notion of function constitutes, with respect to our purpose, a crucial generalization of that concept. This will make easy to justify deep and astonishing (counter-intuitive) incompleteness results about computers and similar machines. The modified Cantor diagonalization will provide a theory of concrete self-reference and I illustrate it by pointing toward an elementary theory of self-reproduction-in the Amoeba's way-and cellular self-regeneration-in the flatworm Planaria's way. To make it easier, I introduce a very simple and powerful formal system known as the Schoenfinkel-Curry combinators. I will use the combinators to illustrate in a more concrete way the notion introduced above. The combinators, thanks to their low-level fine grained design, will also make it possible to make a rough but hopefully illuminating description of the main lessons gained by the careful observation of nature, and to describe some new relations, which should exist between computer science, the science of life and the science of inert matter, once some philosophical, if not theological, hypotheses are made in the cognitive sciences. In the

  13. Regeneración biológica: Secretos de la naturaleza Biological regeneration: Secrets of nature

    Directory of Open Access Journals (Sweden)

    Porfirio Hernández Ramírez

    2006-12-01

    Full Text Available En mayor o menor grado la naturaleza ha proporcionado capacidad regenerativa a diferentes organismos, tanto en el campo de la botánica como en el de la zoología. Entre los nuevos métodos para mejorar las características y propagación de las plantas están las técnicas de regeneración de plantas in vitro, que incluyen la organogénesis y la embriogénesis somática que da la posibilidad de formar las llamadas “semillas artificiales”. En el campo de la zoología también se ha observado la capacidad regenerativa de algunos animales, entre ellos las planarias, las hidras, las estrellas de mar y los crustáceos. Muchos vertebrados han perdido, al menos de una forma significativa, la potencialidad regenerativa de la mayor parte de sus tejidos y órganos. Sin embargo, algunos han retenido una notable habilidad regenerativa, entre ellos los peces teleósteos, los urodelos (salamandras y tritones y otros tipos de anfibios. Los quelonios, cocodrilos y serpientes han perdido en general la capacidad de regenerar partes perdidas. Los lagartos, tienen posibilidad de regenerar la cola. Los mamíferos tienen también limitaciones, ya que no pueden regenerar extremidades, órganos y tejidos de la misma forma que lo hacen algunos animales inferiores. Sin embargo, hay excepciones, entre las que se encuentran los ciervos, el delfín y algunos tipos de ratones como los de la línea MRL. El ser humano expresa solo algunos procesos regenerativos fisiológicos o ante algunas lesiones, que se manifiestan fundamentalmente en las células epidérmicas, de la mucosa oral y del tracto respiratorio, las células sanguíneas, el pelo, las uñas, el tejido muscular, la piel y el tejido óseo. Los nuevos conocimientos sobre las células madre han abierto una nueva era que ofrece al hombre posibilidad de influir terapéuticamente en la regeneración de órganos y tejidosIn a greater or lesser extent, nature has provided different organisms with the regenerative

  14. Redescripción y algunos aspectos ecológicos de Girardia tigrina, G. cameliae y G. paramensis (Dugesiidae, Tricladida en Antioquia, Colombia Redescription and some ecological aspects of Girardia tigrina, G. cameliae y G. paramensis (Dugesiidae, Tricladida in Antioquia, Colombia

    Directory of Open Access Journals (Sweden)

    Mauricio A Muñoz

    2007-12-01

    Full Text Available Turbellaria está integrada por 2 órdenes: Catenulida y Rhabditophora. Dentro del último, el suborden Paludicola comprende las familias Dendrocoelidae, Dugesiidae y Planariidae. En este estudio fueron encontradas: Girardia cameliae, G. paramensis y G. tigrina (Dugesiidae. Fueron analizados 22 sistemas acuáticos (captura manual en zonas de remanso del centro y sur oriente de Antioquia. En 3 individuos por especie, se hizo descripción de: ancho, longitud y color corporal; forma y tamaño de cabeza; posición auricular; distancia entre manchas oculares; longitud y posición de faringe. Se efectuó análisis histológico de: gonoporo; bulbo, papila, glándulas y lúmen peneal; vesículas seminales y vasos deferentes; atrio masculino; testículos; canal bursal y bolsa copuladora; ovario y oviductos; glándulas de la cáscara. Se midieron: oxigeno disuelto, pH, conductividad y dureza en el agua. Se realizó reconstrucción gráfica de órganos reproductivos (caracteres taxonómicos en cortes histológicos seriados. G. tigrina y G. paramensis, presentaron amplia distribución geográfica. Estas especies consumieron ex situ: Daphnia pulex, Chironomus sp., Culex sp. y Drosophila sp. (estados larvales. Tales planarias prefirieron aguas clase II y III (según BMWP/Col. Los aspectos físicos y químicos no exhibieron diferencias entre las preferencias de las especies. G. cameliae se encontró en una sola localidad en condiciones particulares.The Turbellaria comprises 2 orders: Catenulida and Rhabditophora. In the latter, the suborder Paludicola contains the families Dendrocoelidae, Dugesiidae and Planariidae. In this study, we found Girardia cameliae, Girardia paramensis and Giardia tigrina (Dugesiidae in 22 aquatic systems using manual capture in river ponds zones of central and southeastern Antioquia. In 3 individuals per species, a description of: corporal color, length, and wide; head form and size; auricles position; intraocular distance; pharynx