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Sample records for paleoenvironmental reconstructions revealed

  1. Paleo-Environmental Reconstruction Using Ancient DNA

    DEFF Research Database (Denmark)

    Pedersen, Mikkel Winther

    The aim of this thesis has been to investigate and expand the methodology and applicability for using ancient DNA deposited in lake sediments to detect and determine its genetic sources for paleo-environmental reconstruction. The aim was furthermore to put this tool into an applicable context...... solving other scientifically interesting questions. Still in its childhood, ancient environmental DNA research has a large potential for still developing, improving and discovering its possibilities and limitations in different environments and for identifying various organisms, both in terms...... research on ancient and modern environmental DNA (Paper 1), secondly by setting up a comparative study (Paper 2) to investigate how an ancient plant DNA (mini)-barcode can reflect other traditional methods (e.g. pollen and macrofossils) for reconstructing floristic history. In prolongation of the results...

  2. The PRISM3D paleoenvironmental reconstruction

    Science.gov (United States)

    Dowsett, H.; Robinson, M.; Haywood, A.M.; Salzmann, U.; Hill, Daniel; Sohl, L.E.; Chandler, M.; Williams, Mark; Foley, K.; Stoll, D.K.

    2010-01-01

    The Pliocene Research, Interpretation and Synoptic Mapping (PRISM) paleoenvironmental reconstruction is an internally consistent and comprehensive global synthesis of a past interval of relatively warm and stable climate. It is regularly used in model studies that aim to better understand Pliocene climate, to improve model performance in future climate scenarios, and to distinguish model-dependent climate effects. The PRISM reconstruction is constantly evolving in order to incorporate additional geographic sites and environmental parameters, and is continuously refined by independent research findings. The new PRISM three dimensional (3D) reconstruction differs from previous PRISM reconstructions in that it includes a subsurface ocean temperature reconstruction, integrates geochemical sea surface temperature proxies to supplement the faunal-based temperature estimates, and uses numerical models for the first time to augment fossil data. Here we describe the components of PRISM3D and describe new findings specific to the new reconstruction. Highlights of the new PRISM3D reconstruction include removal of Hudson Bay and the Great Lakes and creation of open waterways in locations where the current bedrock elevation is less than 25m above modern sea level, due to the removal of the West Antarctic Ice Sheet and the reduction of the East Antarctic Ice Sheet. The mid-Piacenzian oceans were characterized by a reduced east-west temperature gradient in the equatorial Pacific, but PRISM3D data do not imply permanent El Niño conditions. The reduced equator-to-pole temperature gradient that characterized previous PRISM reconstructions is supported by significant displacement of vegetation belts toward the poles, is extended into the Arctic Ocean, and is confirmed by multiple proxies in PRISM3D. Arctic warmth coupled with increased dryness suggests the formation of warm and salty paleo North Atlantic Deep Water (NADW) and a more vigorous thermohaline circulation system that may

  3. A promising location in Patagonia for paleoclimate and paleoenvironmental reconstructions revealed by shallow firn core from Monte San Valentin (Northern patagonia Icefield, Chile)

    DEFF Research Database (Denmark)

    Vimeux, F.; de Angelis, M.; Ginot, P.

    2008-01-01

    temperature is -11.9°C at 10-m depth allowing to expect well preserved both chemical and isotopic signals, unperturbed by water percolation. The dating of the core, on the basis of a multi-proxy approach combining annual layer counting and radionuclide measurements, shows that past environment and climate can......The study of past climate variability from ice core investigations has been largely developed both in polar areas over the past decades and, more recently, in tropical regions, specifically along the South American Andes between 0° and 20°S. However a large gap still remains at mid......-latitudes in the Southern Hemisphere. In this framework, a 15.3-m long shallow firn core has been extracted in March 2005 from the summit plateau of Monte San Valentín (3747 m, 46°35'S, 73°19'W) in the Northern Patagonia Icefield to test its potential for paleoclimate and paleoenvironmental reconstructions. The firn...

  4. Dynamics of living phytoplankton: Implications for paleoenvironmental reconstructions

    Energy Technology Data Exchange (ETDEWEB)

    Barbosa, A B [Centre for Marine and Environmental Research (CIMA), Universidade do Algarve, Campus de Gambelas, 8005-139 Faro (Portugal)], E-mail: abarbosa@ualg.pt

    2009-01-01

    Phytoplankton is the dominant primary producer in aquatic ecosystems and is considered a gauge of ecological condition and change. Some phytoplankton groups, namely diatoms, dinoflagellates, and coccolithophores, produce morphological or chemical fossils that can be used for paleoenvironmental reconstruction. This study aims to review the processes that regulate dynamics in living phytoplankton and to highlight how this knowledge is used in paleoecological studies. The distribution patterns of phytoplankton in present-day aquatic ecosystems are shaped by the interplay between processes that regulate cell growth and cell death. Cell growth and cell death are regulated by the internal environment of phytoplankton (e.g., specific environmental tolerances, resource uptake properties, cell size, density and morphology, alternative nutritional strategies such as mixotrophy or N{sub 2} uptake, motility, intracellular storage capacities, grazing resistance properties), and by its external environment. The external environment includes variables dependent on the availability of resources (e.g., light intensity, concentration of CO{sub 2} and dissolved inorganic macronutrients and micronutrients, availability of living prey in case of mixotrophs) and variables independent of resources (e.g., temperature, salinity, turbulence, ultraviolet radiation, bioactive compounds, activity of grazers, viruses, and eukaryotic parasites). The importance of recently described loss processes, such as grazing by phagotrophic protists, viral lyses, and programmed cell death, is discussed in the context of its potential impact upon phytoplankton vertical fluxes. Examples of the use of different phytoplankton metrics (e.g. abundance, species composition, species morphology, and elemental composition) to infer contemporaneous as well as past environmental and ecological conditions are critically evaluated.

  5. Dynamics of living phytoplankton: Implications for paleoenvironmental reconstructions

    International Nuclear Information System (INIS)

    Barbosa, A B

    2009-01-01

    Phytoplankton is the dominant primary producer in aquatic ecosystems and is considered a gauge of ecological condition and change. Some phytoplankton groups, namely diatoms, dinoflagellates, and coccolithophores, produce morphological or chemical fossils that can be used for paleoenvironmental reconstruction. This study aims to review the processes that regulate dynamics in living phytoplankton and to highlight how this knowledge is used in paleoecological studies. The distribution patterns of phytoplankton in present-day aquatic ecosystems are shaped by the interplay between processes that regulate cell growth and cell death. Cell growth and cell death are regulated by the internal environment of phytoplankton (e.g., specific environmental tolerances, resource uptake properties, cell size, density and morphology, alternative nutritional strategies such as mixotrophy or N 2 uptake, motility, intracellular storage capacities, grazing resistance properties), and by its external environment. The external environment includes variables dependent on the availability of resources (e.g., light intensity, concentration of CO 2 and dissolved inorganic macronutrients and micronutrients, availability of living prey in case of mixotrophs) and variables independent of resources (e.g., temperature, salinity, turbulence, ultraviolet radiation, bioactive compounds, activity of grazers, viruses, and eukaryotic parasites). The importance of recently described loss processes, such as grazing by phagotrophic protists, viral lyses, and programmed cell death, is discussed in the context of its potential impact upon phytoplankton vertical fluxes. Examples of the use of different phytoplankton metrics (e.g. abundance, species composition, species morphology, and elemental composition) to infer contemporaneous as well as past environmental and ecological conditions are critically evaluated.

  6. Paleoclimatic and paleoenvironmental reconstruction for middle and late holocene in Uruguay southeastern New contributions

    International Nuclear Information System (INIS)

    Del Puerto, L.; Bracco, R.; Inda, H.; Garcia, F.; Panario, D.; Castineira, C.; Capdepont, I.

    2012-01-01

    This work is about the study carried out within the framework of the environmental evolution and the prehistoric human occupation on coastal lagoons in the east of Uruguay. The analysis of the sediments in the zone enable the reconstruction of the Holocene climate history as well as the construction of the Paleoclimatic and paleoenvironmental model belong to the middle and late Holocene

  7. Paleo-environmental Reconstruction of Oligocene to Early Miocene ...

    African Journals Online (AJOL)

    ADOWIE PERE

    province on the West African continental margin. It lies mainly in the ... basin are favorable for the generation, accumulation ... reconstruction as well as recognition of oil and gas deposits .... zone which covers from 1640ft to 11,100ft of the well.

  8. Paleoenvironmental and Paleoecological Reconstruction of the Ancient Maya Port Site of Vista Alegre, Quintana Roo, Mexico

    Science.gov (United States)

    Rissolo, D.; Jaijel, R.; Glover, J. B.; Goodman, B.; Beddows, P. A.; Carter, A.; Smith, D.

    2013-12-01

    Ancient Maya ports along the largely unstudied northeast coast of the Yucatan Peninsula once supported a network of trade routes linking people, goods, and ideas from across Mesoamerica. The Costa Escondida Project has focused on the interrelationships between the ancient Maya and their dynamic coastal environment along the shores of the Laguna Holbox. Central to our interdisciplinary efforts is a paleoenvironmental and paleoecological reconstruction of the key port of Vista Alegre - a low-lying island surrounded by a complex mosaic of costal ecosystems, sedimentological facies, and hydrological conditions. Geoarchaeological field methods, such as sediment coring, have made possible multiproxy analyses that enable us to better understand sea level fluctuations and the morphology of the shoreline and harboring locations over time, as well as changes in ecosystem biodiversity, which would have presented the maritime Maya with unique challenges and opportunities.

  9. Past and Present Weathering Recorded in Cretaceous Shale Samples from Colombia - Implications for Paleoenvironmental Reconstructions

    Science.gov (United States)

    Mahoney, C.; März, C.; Wagner, T.

    2016-12-01

    It is well known that for geochemical studies on ancient rocks, outcrop samples can be compromised by present-day weathering. This raises the fundamental question, if only outcrop samples are available, how reliable can paleoenvironmental reconstructions be? To answer this question, shale samples have been gathered from Cretaceous outcrops of the Eastern Cordillera of Colombia, and analysed by XRF and Fe speciation in order to investigate paleo-redox conditions in this margin basin of the Proto-Atlantic. The samples are consistently depleted (relative to average shale) in redox-related trace metals and in total Fe indicating oxic conditions, whereas Fe speciation (highly reactive over total Fe) indicates anoxic conditions. We ask if this depletion in trace metals and total Fe is due to a lack of primary supply from the depositional environment, or if is it caused by modern oxidative outcrop weathering in this tropical mountainous setting? Our results from artificial weathering experiments confirm that certain trace metals U, Zn and Mo are easily leached from the samples, whereas Fe is quantitatively retained in the samples due to conversion of pyrite and siderite to Fe oxides. Pristine samples from wells in the adjacent Middle Magdalena Valley Basin (MMV) also exhibit total Fe depletion, but are up to 2000-fold enriched in Mo. This combined evidence indicates that the depletion of trace metals may be due to contemporary weathering, but there has to be a paleoenvironmental reason behind the low total Fe signature. The Guiana Shield was the probable source of sediment to the Cretaceous basin. The Chemical Index of Alteration suggest the source of detrital material was initially highly weathered (average 83, maximum 95). Ancient laterites have been identified on the Guiana Shield, and retention of Fe in these laterites may explain the low Fe input into the Eastern Cordillera basin. These results confirm that trace metal-based redox proxies may be seriously affected by

  10. Paleoenvironmental inference models from sediment diatom assemblages in Baffin Island lakes (Nunavut, Canada) and reconstruction of summer water temperature

    Energy Technology Data Exchange (ETDEWEB)

    Joynt, E. H. III; Wolfe, A. P. [Colorado Univ., Inst. of Arctic and Alpine Research, Boulder, CO (United States)

    2001-06-01

    Lake sediments are attractive repositories for paleoclimate proxy data because they are temporally continuous, undisturbed and datable. It is particularly true of lakes which are ubiquitous throughout the Arctic regions, enabling dense spatial coverage of sampling sites. In more recent times diatoms have been applied to a a variety of paleoenvironmental questions. However, these studies have been of limited usefulness because they lack a regional training set that would facilitate making quantitative paleoenvironmental inferences. This article provides this inferential tool, together with an example of its application. Conductivity, pH, summer lake water temperature, and mean annual air temperature have been identified as the significant controls over diatom assemblages from the surface sediments of 61 lakes on Baffin Island. Using weighted-averaging regression and calibration, predictive models for these parameters have been developed. Results show that the summer lake water temperature model provides realistic reconstructions when compared with other paleoenvironmental records. Over the past 5000 years the amplitude of reconstructed summer lake water temperature was found to be on the order of 4 degrees C, expressed primarily as progressive neoglacial cooling culminating in the Little Ice Age. Diatom-inferred summer water temperatures have increased by about 2 degrees C in the past 150 years, which is also in agreement with independent paleoclimatic reconstructions. The data obtained in this study complements similar efforts from the western Canadian Arctic and the northern reaches of Scandinavia, however, this is the first training set developed for lakes situated entirely north of the tree line. As such, it extends the applicability of diatoms for paleotemperature reconstructions well into the Arctic tundra biome. 45 refs., 1 tab., 10 figs., 1 appendix.

  11. Paleoenvironmental reconstruction of the Oligocene-Miocene deposits of the Tethyan Seaway, Qom Formation, Central Iran

    Science.gov (United States)

    Dabaghi Sadr, Fatemeh; Schmiedl, Gerhard

    2017-04-01

    The Cenozoic climate transition from greenhouse to icehouse conditions was associated with major paleogeographic changes in the Tethyan realm. The closure of the Tethyan Seaway and its Iranian gateways during the terminal Paleogene and early Neogene, between approximately 28 and 18 million years, influenced the latitudinal exchange of water masses and energy and is documented in sediment successions of the Qom formation in central Iran. Little is known on the spatial expression and the exact depositional histories of the Qom Formation on orbital time-scales, including a lack of quantitative sea-level reconstructions and studies on the impact of climatic and tectonic changes on marine ecosystems and sedimentation processes. The PhD project focuses on the investigation of lithostratigraphy, biostratigraphy, paleoecology and paleoenvironmental evolution of the Iranian gateways based on late Oligocene to early Miocene foraminiferal faunas and carbonate facies from selected sediment sections of the Qom Basin. The Qom Formation was deposited in the Central Iranian back-arc basin during the Oligocene-Miocene. In this study foraminiferal faunas and carbonate microfacies were studied based on total 191 samples of two section of Qom Formation. One of them is Molkabad section, which is located northwest of Molkabad mountains, southeast of Garmsar. The section mainly consists of limestones, calcareous marls, marls, and gypsum-bearing marls with a total thickness of 760 meters. The Qom Formation at Molkabad section overlies Eocene rocks with an unconformity and consists of the following lithostratigraphic units (from the lower to upper part): Lithothamnium Limestone, Lower Marl Limestone, Bryozoa Limestone, and Upper Marl Group. The Molkabad fault separates the Qom Formation from the overlying Upper Red Formation. The other section is located at Navab anticline in Qom Formation .The section mainly consist of limestone, marl, and gypsum with a total thickness of 318 meters Navab

  12. Paleoenvironmental reconstruction and evolution of an Upper Cretaceous lacustrine-fluvial-deltaic sequence in the Parecis Basin, Brazil

    Science.gov (United States)

    Rubert, Rogerio R.; Mizusaki, Ana Maria Pimentel; Martinelli, Agustín G.; Urban, Camile

    2017-12-01

    The Cretaceous in the Brazilian Platform records events of magmatism, tectonism and sedimentation coupled to the Gondwana breakup. Some of these events are registered as sedimentary sequences in interior basins, such as in the Cretaceous sequence of the Alto Xingu Sub-basin, Parecis Basin, Central Brazil. This article proposes the faciologic characterization and paleoenvironmental reconstruction of the Cretaceous sequence of the eastern portion of the Parecis Basin and its relation with some reactivated structures as, for instance, the Serra Formosa Arch. Based on both data from outcrops and core drillings a paleoenvironmental and evolutionary reconstruction of the sequence is herein presented. The base of the studied section is characterized by chemical and low energy clastic sedimentation of Lake Bottom and Shoreline, in a context of fast initial subsidence and low sedimentation rate. As the subsidence process decreased, a deltaic progradation became dominant with deposition in a prodelta environment, followed by a deltaic front and deltaic plain interbedded with fluvial plain, and aeolian deposition completing the sequence. The inferred Coniacian-Santonian age is based on vertebrate (fishes and notosuchians) and ostracod fossils with regional chrono-correlates in the Adamantina (Bauru Group), Capacete (Sanfranciscana Basin), and Bajo de la Carpa (Neuquén Group, in Argentina) formations. The formation of a Coniacian depocenter in the Alto Xingu Sub-basin is associated to the Turonian-Coniacian reactivation event in the Peruvian Orogenic Phase of the Andean Orogeny, with the transference of stresses to interplate setting, reactivating Proterozoic structures of the basement.

  13. Sedimentologic and paleontologic study of the southeast coast of Buenos Aires province, Argentina: A late Pleistocene Holocene paleoenvironmental reconstruction

    Science.gov (United States)

    Aramayo, S. A.; Téllez, B. Gutiérrez; Schillizzi, R. A.

    2005-10-01

    A paleoenvironmental reconstruction of the southeast coast of Buenos Aires province, Argentina, is made mainly on the basis of paleontological and paleoichnological studies, supported by sedimentological analyses and radiocarbon dating. Continental late Pleistocene and continental, transitional, and marine Holocene stratigraphic units are identified. The former comprises fossil mammals and ichnites of 16000-12,000 BP. The continental early Holocene time, ca. 8100 BP, is represented by an interdune paleoenvironment in which shallow brackish ponds were colonized by diatoms, fish, rodents, and birds. A transitional paleoenvironment in the middle Holocene—6930-6570 BP—is recorded by deposits formed by estuarine crabs. During the late Holocene, between 5000 and 4800 BP, a marine transgression was recorded by a rich mollusc fauna.

  14. Testing multivariate analysis in paleoenvironmental reconstructions using pollen records from Lagoa Salgada, NE Rio de Janeiro State, Brazil

    Directory of Open Access Journals (Sweden)

    Mauro B. de Toledo

    2009-12-01

    Full Text Available Despite the indisputable significance of identification of modern analogs for Paleoecology research, relatively few studies attempted to integrate modern and fossil samples on paleoenvironmental reconstructions. In Palynology, this general pattern is not different from other fields of Paleoecology. This study demonstrates the practical application of modern pollen deposition data on paleoenvironmental reconstructions based on fossil pollen by using multivariate analysis. The main goal of this study was to use Detrended Correspondence Analysis (DCA to compare pollen samples from two sediment cores collected at Lagoa Salgada, a coastal lagoon located at northeastern Rio de Janeiro State. Furthermore, modern surface samples were also statistically compared with samples from both cores, providing new paleoecological insights. DCA demonstrated that samples from both cores are more similar than previously expected, and that a strong pattern, related to a paleoenvironmental event, is present within the fossil data, clearly identifying in the scatter plot samples that represent pre- and post-environmental change. Additionally, it became apparent that modern vegetation and environmental conditions were established in this region 2500 years before present (BP. Multivariate Analysis allowed a more reliable integration of modern and fossil pollen data, proving to be a powerful tool in Paleoecology studies that should be employed more often on paleoclimate and paleoenvironmental reconstructions.Apesar da indiscutível importância da identificação de análogos modernos para estudos de Paleoecologia, relativamente poucos estudos procuraram integrar amostras modernas e fósseis em reconstruções paleoambientais. Na Palinologia este padrão não é diferente de outras áreas da Paleoecologia. Este estudo demonstra a aplicação prática de dados de deposição polínica atual em reconstruções paleoambientais baseadas em pólen fóssil utilizando an

  15. PALEOENVIRONMENTAL RECONSTRUCTION FROM BENTHIC FORAMINIFERAL ASSEMBLAGES OF EARLY HOLOCENE, SHALLOW MARINE DEPOSITS IN GOMBONG, CENTRAL JAVA

    Directory of Open Access Journals (Sweden)

    Luli Gustiani

    2017-07-01

    Full Text Available A 30m-long sediment core covering the Holocene period was taken from the area of Gombong in the southern part of Central Java. The sediments were deposited in a shallow marine to lagoonal environment that was confirmed by the dominance of Ammonia beccarii along the core intervals. In addition, the species Quinqueloculina poeyana, Miliolinella lakemacquariensis, and Miliolinella subrotunda were also found in the sediments that are typical of normal shallow marine conditions. The decrease and increase in the abundance of these species throughout the core is an expression of sea level change in the area, which results the environmental changes. Low sea level is expressed by the dominance of Ammonia beccarii, and the low abundances or absence of the other three species. In contrast, high sea level stands are reflected by the presence of all four species. The high sea level would imply favorable conditions for benthic foraminifera because it would result in normal shallow marine conditions in the area. Finally, from this benthic assemblages study, it can be assumed that the environmental transformation from the originally shallow marine environment into land was occurred at level 5.5m depths of the sediment core, when all benthic foraminifera were terminated, including Ammonia beccarii. These new results from the shallow marine deposits in the Gombong area are a new contribution to the understanding of paleoenvironmental change in the region, which in turn is important for understanding sea level change as well as climate change in the region.

  16. Facies analysis and paleoenvironmental reconstruction of Upper Cretaceous sequences in the eastern Para-Tethys Basin, NW Iran

    Energy Technology Data Exchange (ETDEWEB)

    Omidvar, M.; Safari, A.; Vaziri-Moghaddam, H.; Ghalavand, H.

    2016-07-01

    Upper Cretaceous mixed carbonate-siliciclastic sequences are among the most important targets for hydrocarbon exploration in the Moghan area, located in the eastern Para-Tethys Basin. Despite of their significance, little is known about their facies characteristics and depositional environments. Detailed facies analysis and paleoenvironmental reconstruction of these sequences have been carried out in eight surface sections. Accordingly, four siliciclastic facies, eight carbonate facies and one volcanic facies have been recognized. Detailed facies descriptions and interpretations, together with the results of facies frequency analysis, standard facies models and Upper Cretaceous depositional models of Para-Tethys Basin, have been integrated and a non-rimmed carbonate platform is presented. This platform was affected by siliciclastic influx, in the form of coastal fan delta and submarine fans in the shallow- to deep-marine parts, respectively. This model is interpreted to be shallower in the central and northeastern parts of the Moghan area. Toward the southeast and southwest, this shallow platform turns into deep marine settings along steep slopes without remarkable marginal barriers. (Author)

  17. Diatom-Based Paleoenvironmental Reconstruction of Lake Telmen for the Last 6230 Years

    Directory of Open Access Journals (Sweden)

    N.Soninkhishig

    2003-06-01

    Full Text Available The preserved diatom flora in a 14C dated (0-6230 yBP, 343 cm long core sequence from Lake Telmen, Mongolia, was investigated to determine the nature of the lake-ecosystem and watershed response to Late Holocene climate change. Modern Lake Telmen is a slightly saline (presently 4 g L-1 closed- basin lake located along a N-S and E-W aridity ecotone in north-central Mongolia, making it sensitive to climate-driven changes in effective moisture balance. Diatoms were not preserved regularly in two areas of the Lake Telmen sediment record (5380-41 50 yBP and 1050-425 yBP possibly due to high carbonate preservation; however, diatom preservation between these areas was good to excellent. Diatom-based paleosalinity reconstruction using species-specific salinity optima from the Northern Great Plains of North America and community analysis suggests the following climate-lake response model during the Late Holocene. From 6230 to 5520 radiocarbon years ago, warm-dry climate resulted in a small salty (20 g L-1 lake in the Telmen basin that was dominated by high salinity indicator species (e.g. Cyclotella caspia, Navicellapusilla, Brachysira aponina. From 3 860 to 1200 radiocarbon yBP, Lake Telmen recorded a period of a modulating climate that resulted in regular fluctuations in paleosalinity from 2 to 4 g L-1 in conjunction with lake level changes. Dominance in the diatom flora fluctuated between the freshwater planktonic form Cyclotella bodanica var. affinis and the salinity-tolerant benthic taxon Anomoeoneis sphaerophora f. costata during this period characterized by generally more humid climatic periods interspersed with dry-as-present conditions. The most modern samples (0-250 yBP preserve floristic assemblages similar to those found between 3860 to 1200 radiocarbon yBP and indicate that as recently as 250 years ago Lake Telmen had lower salinity values than modern day.

  18. Reconstructing the paleo-topography and paleo-environmental features of the Sarno River plain (Italy) before the AD 79 eruption of Somma-Vesuvius volcanic complex

    Science.gov (United States)

    Vogel, Sebastian; Märker, Michael

    2010-05-01

    SSP1.4 Understanding mixed siliciclastic-volcaniclastic depositional systems and their relationships with geodynamics or GD2.3/CL4.14/GM5.8/MPRG22/SSP3.5 Reconstruction of ancient continents: Dating and characterization of paleosurfaces Reconstructing the paleo-topography and paleo-environmental features of the Sarno River plain (Italy) before the AD 79 eruption of Somma-Vesuvius volcanic complex Sebastian Vogel[1] & Michael Märker[1] [1] Heidelberg Academy of Sciences and Humanities c/o University of Tübingen, Rümelinstraße 19-23, D-72070 Tübingen, Germany. Within the geoarchaeological research project "Reconstruction of the Ancient Cultural Landscape of the Sarno River Plain" undertaken by the German Archaeological Institute in cooperation with the Heidelberg Academy of Sciences and Humanities/University of Tübingen a methodology was developed to model the spatial dispersion of volcanic deposits of Somma-Vesuvius volcanic complex since its Plinian eruption AD 79. Eventually, this was done to reconstruct the paleo-topography and paleo-environment of the Sarno River plain before the eruption AD 79. We collected, localized and digitized more than 1,800 core drillings to gain a representative network of stratigraphical information covering the entire plain. Besides other stratigraphical data including the characteristics of the pre-AD 79 stratum, the depth to the pre-AD 79 paleo-surface was identified from the available drilling documentation. Instead of applying a simple interpolation of the drilling data, we reconstructed the pre-AD 79 paleo-surface with a sophisticated geostatistical methodology using a machine based learning approach based on classification and regression trees. We hypothesize that the present-day topography reflects the ancient topography, because the eruption of AD 79 coated the ancient topography, leaving ancient physiographic elements of the Sarno River plain still recognizable in the present-day topography. Therefore, a high resolution

  19. Heritability of the Structures and 13C Fractionation in Tomato Leaf Wax Alkanes: A Genetic Model System to Inform Paleoenvironmental Reconstructions

    Directory of Open Access Journals (Sweden)

    Amanda L. D. Bender

    2017-06-01

    Full Text Available Leaf wax n-alkanes are broadly used to reconstruct paleoenvironmental information. However, the utility of n-alkanes as a paleoenvironmental proxy may be modulated by the extent to which biological as well as environmental factors influence the structural and isotopic variability of leaf waxes. In paleoclimate applications, there is usually an implicit assumption that most variation of leaf wax traits through a time series can be attributed to environmental change and that biological sources of variability within plant communities are small. For example, changes in hydrology affect the δ2H of waxes via rainwater and the δ13C of leaf waxes by changing plant communities. We measured the degree of genetic control over δ13C variation in leaf waxes within closely related species with an experimental greenhouse growth study. We measured the proportion of variability in structural and isotopic leaf wax traits that is attributable to genetic variation using a set of 76 introgression lines (ILs between two interfertile Solanum (tomato species: S. lycopersicum cv M82 (hereafter cv M82 and S. pennellii. Leaves of S. pennellii, a wild desert tomato relative, produced significantly more iso-alkanes than cv M82, a domesticated tomato cultivar adapted to water-replete conditions. We report a methylation index to summarize the ratio of branched (iso- and anteiso- to total alkanes. Between Solanum pennellii and cv M82, the iso-alkanes were found to be enriched in 13C by 1.2–1.4‰ over n-alkanes. The broad-sense heritability values (H2 of leaf wax traits describe the degree to which genetic variation contributes to variation of these traits. Variation of individual carbon isotopic compositions of alkanes were of low heritability (H2 = 0.13–0.19, suggesting that most variation in δ13C of leaf waxes in this study can be attributed to environmental variance. This supports the interpretation that variation in the δ13C of wax compounds recorded in sediments

  20. Heritability of the structures and 13C fractionation in tomato leaf wax alkanes: a genetic model system to inform paleoenvironmental reconstructions

    Science.gov (United States)

    Bender, Amanda L. D.; Chitwood, Daniel H.; Bradley, Alexander S.

    2017-06-01

    Leaf wax n-alkanes are broadly used to reconstruct paleoenvironmental information. However, the utility of n-alkanes as a paleoenvironmental proxy may be modulated by the extent to which biological as well as environmental factors influence the structural and isotopic variability of leaf waxes. In paleoclimate applications, there is usually an implicit assumption that most variation of leaf wax traits through a time series can be attributed to environmental change and that biological sources of variability within plant communities are small. For example, changes in hydrology affect the δ2H of waxes via rainwater and the δ13C of leaf waxes by changing plant communities. We measured the degree of genetic control over δ13C variation in leaf waxes within closely related species with an experimental greenhouse growth study. We measured the proportion of variability in structural and isotopic leaf wax traits that is attributable to genetic variation using a set of 76 introgression lines (ILs) between two interfertile Solanum (tomato) species: S. lycopersicum cv M82 (hereafter cv M82) and S. pennellii. Leaves of S. pennellii, a wild desert tomato relative, produced significantly more iso-alkanes than cv M82, a domesticated tomato cultivar adapted to water-replete conditions. We report a methylation index to summarize the ratio of branched (iso- and anteiso-) to total alkanes. Between S. pennellii and cv M82, the iso-alkanes were found to be enriched in 13C by 1.2-1.4‰ over n-alkanes. The broad-sense heritability values (H2) of leaf wax traits describe the degree to which genetic variation contributes to variation of these traits. Variation of individual carbon isotopic compositions of alkanes were of low heritability (H2 = 0.13-0.19), suggesting that most variation in δ13C of leaf waxes in this study can be attributed to environmental variance. This supports the interpretation that variation in the δ13C of wax compounds recorded in sediments reflects

  1. Widespread occurrence of distinct alkenones from Group I haptophytes in freshwater lakes: Implications for paleotemperature and paleoenvironmental reconstructions

    Science.gov (United States)

    Longo, William M.; Huang, Yongsong; Yao, Yuan; Zhao, Jiaju; Giblin, Anne E.; Wang, Xian; Zech, Roland; Haberzettl, Torsten; Jardillier, Ludwig; Toney, Jaime; Liu, Zhonghui; Krivonogov, Sergey; Kolpakova, Marina; Chu, Guoqiang; D'Andrea, William J.; Harada, Naomi; Nagashima, Kana; Sato, Miyako; Yonenobu, Hitoshi; Yamada, Kazuyoshi; Gotanda, Katsuya; Shinozuka, Yoshitsugu

    2018-06-01

    Alkenones are C35-C42 polyunsaturated ketone lipids that are commonly employed to reconstruct changes in sea surface temperature. However, their use in coastal seas and saline lakes can be hindered by species-mixing effects. We recently hypothesized that freshwater lakes are immune to species-mixing effects because they appear to exclusively host Group I haptophyte algae, which produce a distinct distribution of alkenones with a relatively consistent response of alkenone unsaturation to temperature. To evaluate this hypothesis and explore the geographic extent of Group I haptophytes, we analyzed alkenones in sediment and suspended particulate matter samples from lakes distributed throughout the mid- and high latitudes of the Northern Hemisphere (n = 30). Our results indicate that Group I-type alkenone distributions are widespread in freshwater lakes from a range of different climates (mean annual air temperature range: -17.3-10.9 °C; mean annual precipitation range: 125-1657 mm yr-1; latitude range: 40-81°N), and are commonly found in neutral to basic lakes (pH > 7.0), including volcanic lakes and lakes with mafic bedrock. We show that these freshwater lakes do not feature alkenone distributions characteristic of Group II lacustrine haptophytes, providing support for the hypothesis that freshwater lakes are immune to species-mixing effects. In lakes that underwent temporal shifts in salinity, we observed mixed Group I/II alkenone distributions and the alkenone contributions from each group could be quantified with the RIK37 index. Additionally, we observed significant correlations of alkenone unsaturation (U37K) with seasonal and mean annual air temperature with this expanded freshwater lakes dataset, with the strongest correlation occurring during the spring transitional season (U37K = 0.029 * T - 0.49; r2 = 0.60; p < 0.0001). We present new sediment trap data from two lakes in northern Alaska (Toolik Lake, 68.632°N, 149.602°W; Lake E5, 68.643°N, 149.458

  2. Late Pliocene - Early Pleistocene paleoenvironmental reconstruction based on stable isotope compositions of Stephanorhinus sp. and Mammut sp. teeth

    Science.gov (United States)

    Szabó, Péter; Kovács, János; Kocsis, László; Gasparik, Mihály; Vennemann, Torsten; Demény, Attila; Virág, Attila

    2014-05-01

    Stable isotope measurements of skeletal apatite from herbivorous mammals are often used to provide information on the terrestrial paleoenvironment and paleoclimate. In this study fossil teeth of Stephanorhinus Kretzoi 1942 (rhinoceros) and Mammut Blumenbach 1799 (mastodon), amongst others, were investigated from the Carpathian Basin. According to the biostratigraphy, the age of the samples has a range from Late Pliocene to Early Pleistocene. Reconstructing paleoclimate and paleoenvironment of this era is important as it can be an analogue for the future climate. Oxygen and carbon isotopic compositions were measured from the tooth enamel, because it is believed to be the most resistant to diagenetic alteration (e.g., Kohn & Cerling, 2002). The carbon isotopic composition in the carbonate fraction of apatite can be related to the diet of the animal (Kohn & Cerling, 2002). Hence, it can reflect the photosynthetic pathway (C3 or C4) of the plants consumed by these herbivores. The δ18O values were determined in the phosphate fraction of apatite. In the case of large mammals that are obligate drinkers, the δ18O values closely track those of the environmental water (Bryant & Froelich, 1995). Knowing the δ18O values of environmental water and relating it to local precipitation, the mean annual temperature (MAT) of the site can be calculated (Dansgaard, 1964). The δ13C values range from -10 to -15 o (VPDB). The result clearly shows that these animals consumed C3 plants. Most of the δ13C values indicate mixed grassland-open woodland rather than a closed canopy forest. Although there is variation in the δ18O values (mean 14.2 ± 1.0 o VSMOW, n=17), most of the samples would support a MAT range of 8-12 ° C. This is in good agreement with other proxies for the localities and time period (Kovács et al., 2013). Bryant, D.J. & Froelich, P.N. (1995) A model of oxygen-isotope fractionation in bodywater of large-mammals. Geochimica et Cosmochimica Acta 59, 4523

  3. U-Pb Geochronology of non-marine Upper Triassic strata of the Colorado Plateau (western North America): implications for stratigraphic correlation and paleoenvironmental reconstruction

    Science.gov (United States)

    Rasmussen, C.; Mundil, R.; Irmis, R. B.; Keller, C. B.; Giesler, D.; Gehrels, G. E.

    2017-12-01

    The Triassic is a critical period in Earth history that witnessed the origin of modern ecosystems and frequent climate fluctuations, as well as major environmental events such as flood basalt volcanism and bolide impacts. The Chinle Formation contains a primary non-marine archive for past ecosystems in North America due to its fossil richness and well-studied sedimentology. Moreover, within these highly fossiliferous strata, a biotic turnover has been reported that has been hypothesized to coincide with one or more of the aforementioned environmental events. Unfortunately, few radioisotopic ages have been published for the Late Triassic, limiting our ability for lithological and paleoenvironmental correlations. In addition, the superposition of the Chinle Formation remains illusive due to frequent lateral facies changes and discontinuous outcrops across the Colorado Plateau. The 520 m long core 1A of the Colorado Plateau Coring Project from Petrified Forest National Park (PFNP) (Arizona) provides, for the first time, a continuous section of these early Mesozoic sedimentary strata. Many of the sand- and siltstones from this continuous succession throughout most of the Upper Triassic Chinle Formation contain euhedral zircons suitable for U-Pb analyses. We analyzed >300 crystals each from 10 samples using LA-ICPMS; these results indicated abundant Late Triassic crystals that appear to be closely associated with the depositional age of the host rock. We then selected the youngest grains from these samples to obtain precise CA-TIMS U-Pb single zircon ages in order to constrain the maximum depositional ages (using quantitative methods) of these formations. We are able to revise the proposed time scale (based on outcrop samples) for Upper Triassic strata at PFNP and evaluate whether the biotic turnover observed within the Sonsela Member of these strata coincides with the Manicouagan bolide impact event. This revised chronostratigraphic framework allows intercalibration

  4. Effects of temperature, pH and nutrient concentration on branched GDGT distributions in East African lakes: Implications for paleoenvironmental reconstruction

    NARCIS (Netherlands)

    Loomis, S.E.; Russell, J.M.; Eggermont, H.; Verschuren, D.; Sinninghe Damsté, J.S.

    2014-01-01

    Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are membrane lipids found in soils and sediments and their relative abundance correlates with temperature and pH, enabling them to be used as proxies in reconstructing past climatic and environmental conditions. However, the potential for

  5. Paleoenvironmental Reconstruction of the North Atlantic Current Variations from MIS 3 to Holocene Based on Multiproxy Record from the North-East Scotland Continental Margin.

    Science.gov (United States)

    Ovsepyan, Y.; Tikhonova, A.; Novichkova, E.; Gupta, R. M.; Korsun, S.; Matul, A.

    2017-12-01

    In order to reconstruct the history of water mass interaction between the North Atlantic and the Nordic Seas since MIS 3 to the present, the sediment core from the North-East Scotland continental slope was investigated. The site of core AI-3521 (59°30.009 N, 7°20.062 E) from the 1051 m water depth is located beneath the pathway of the North Atlantic current which transports warm and saline Atlantic surface water to the Norwegian Sea. The age model of the sequence is based on stable isotope record of benthic Cassidulina neoteretis and planktic Neogloboquadrina pachyderma sin. and Globigerina bulloides. The Holocene interval of the upper 1.5 m is characterized by high sedimentation rates and the high biodiversity of microfauna. The distribution of ice rafted debris and CaCO3 content; benthic and planktic foraminiferal assemblages; oxygen, carbon and boron isotopes, Mg/Ca ratio were used to reconstruct the regional paleoceanographic conditions (bioproductivity, temperature, salinity) and to compare with the paleoclimatic events in the subpolar North Atlantic in the frame of the global environmental changes during the Late Pleistocene and Holocene. The research was supported by Russian Science Foundation projects 16-47-02009 and 14-50-00095.

  6. Paleoecología: el uso de los quironómidos fósiles (Diptera: Chironomidae en reconstrucciones paleoambientales durante el Cuaternario en la Patagonia Paleoecology: the use of fossil chironomids (Diptera: Chironomidae for paleoenvironmental reconstructions in Patagonia

    Directory of Open Access Journals (Sweden)

    Julieta Massaferro

    2009-06-01

    the biological indicators from lake sediments more useful in environmental reconstructions. Chironomids have recently acquired great importance due to the promising results obtained regarding climatic reconstructions mainly in Europe and North America. In South America, the use of fossil chironomids in Quaternary studies is still limited and the reason for that is the little regional taxonomic knowledge. Most of these studies were developed in glacial lakes in Patagonia both in Argentina and Chile. The larvae of chironomids are an invaluable paleolimnological tool due to the sensitiveness of these insects to natural and non-natural environmental changes. In addition to that, this group of insects is widely distributed with a high abundance and diversity. Their head capsules can preserve in sediments holding characters which allow their generic and sometimes specific identification. The study of chironomid assemblages can be used with different goals, for instance, to study eutrofication due to their quick response to changes in organic matter, nutrients and heavy metals. However, one of the most significant potentials of this group is its sensitivity to temperature variations, which is why the most important implementation of their study in sediments is centered in climatic reconstructions. This article is a review of the studies developed in Argentinean and Chilean Patagonia, using fossil chironomids for paleoenvironmental reconstructions.

  7. Great Basin paleoenvironmental studies project

    International Nuclear Information System (INIS)

    1993-01-01

    Project goals, project tasks, progress on tasks, and problems encountered are described and discussed for each of the studies that make up the Great Basin Paleoenvironmental Studies Project for Yucca Mountain. These studies are: Paleobotany, Paleofauna, Geomorphology, and Transportation. Budget summaries are also given for each of the studies and for the overall project

  8. paleoenvironmental settings and assemblage changes

    African Journals Online (AJOL)

    Kasanzu

    shallow borehole drilled in the southern coastal basin of Tanzania with the aim of characterizing foraminifera and palynomorphs assemblage changes aiming at reconstructing ..... decline in temperature at EOT which caused the extinction of ...

  9. Palynological and paleoenvironmental studies of the Gombe ...

    African Journals Online (AJOL)

    Palynological and paleoenvironmental studies of the Gombe Formation Gongola Basin, Nigeria. OJ Ojo, SO Akande. Abstract. No Abstract Available Journal of Mining and Geology Vol.40(2) 2004: 143-149. Full Text: EMAIL FULL TEXT EMAIL FULL TEXT · DOWNLOAD FULL TEXT DOWNLOAD FULL TEXT.

  10. Paleoenvironmental conditions in the late Paleogene, Sumatra, Indonesia

    Science.gov (United States)

    O'shea, Natalie; Arthur Bettis, E.; Zaim, Yahdi; Rizal, Yan; Aswan, Aswan; Gunnell, Gregg F.; Zonneveld, John-Paul; Ciochon, Russell L.

    2015-11-01

    A stratified paleosol sequence exposed in an open pit mine in central Sumatra provides a record of the paleoenvironmental conditions in the lower reaches of a large river system in the late Paleogene (latest Eocene or Oligocene). Morphological, geochemical, and stable isotope data suggest that the sequence represents a mosaic of local environmental conditions changing from estuarine to riverine up section. Weakly expressed soils formed on low-lying estuary surfaces, while more well expressed soils formed on higher, better drained surfaces. Peatlands (coal) with clayey subsoils were along the estuary margins. Well-expressed soils with evidence of clay translocation and chemical weathering become more common higher in the section where alluvial deposits associated with a meandering river are dominant. Stable carbon isotope ratios support a paleolandscape dominated by C3 plants with input by C4 vegetation limited to a few intervals. Finally, whole-rock geochemistry suggests moderate chemical weathering consistent with a tropical locality. This multi-proxy paleoenvironmental reconstruction suggests a highly productive lowland forest environment at this locality in the late Paleogene and provides the first direct examination of the terrestrial environment in Sumatra at this time. The limited fossil record in Island Southeast Asia during this time period is likely a result of poor bone and shell preservation in tropical forest environments combined with a general lack of systematic prospecting. However, our continuing work in this area has produced a relatively diverse assemblage of fossil vertebrates, now including fishes, amphibians, turtles, crocodiles, and mammals, as well as a growing diversity of fossil plants.

  11. PaleoGeo: a Web based GIS database for paleoenvironmental studies

    Science.gov (United States)

    Song, Wonsuh; Kondo, Yasuhisa; Oguchi, Takashi

    2014-05-01

    Paleoenvironmental studies cover various fields such as paleohydrology, geomorphology, paleooceanology, paleobiology, paleoclimatology, and chronology. It is difficult for an individual researcher to collect and compile enormous data regarding these fields. We have been compiling portal data and presenting them using a web-based geographical information system (Web-GIS) called PaleoGeo for the multidisciplinary project 'Replacement of Neanderthals by Modern Humans'. The aim of the project is to reconstruct the distribution of Neanderthals and modern humans in time and space in relation to past climate change. We have been collecting information from almost three thousand articles of 13 journals regarding paleoenvironmental research (i.e., Boreas, Catena, Climatic Change, Earth Surface Processes and Landforms, Geomorphology, Journal of Quaternary Science, Palaeogeography, Palaeoclimatology, and Palaeoecology, Quaternary International, Quaternary Research, Quaternary Science Reviews, The Holocene, and The Journal of Geology). The topics of the articles were classified into six themes (paleohydrology, earth surface processes and materials, paleooceanology, paleobiology, palaeoclimatology, and chronology) and 19 subthemes (hydrology, flood, fluvial, glacier, fluvial/glacier, sedimentology, soil, slope process, periglacial, peat land, eolian, sea-level, biology, vegetation, zoology, vegetation/zoology, archaeology, climate, atmosphere, and chronology). The collected data consist of the journal name, information about each paper (authors, title, volume, year, and page numbers), site location (country name, longitude, and latitude), theme, subtheme, keywords, DOI (Digital Object Identifier), and period (era). Location data are indispensable for paleoenvironmental studies. The PaleoGeo shows information with a map, which is an advantage of this database system. However, the number of the paleoenvironmental studies is growing rapidly and we have to effectively cover them as

  12. EEG source reconstruction reveals frontal-parietal dynamics of spatial conflict processing.

    Directory of Open Access Journals (Sweden)

    Michael X Cohen

    Full Text Available Cognitive control requires the suppression of distracting information in order to focus on task-relevant information. We applied EEG source reconstruction via time-frequency linear constrained minimum variance beamforming to help elucidate the neural mechanisms involved in spatial conflict processing. Human subjects performed a Simon task, in which conflict was induced by incongruence between spatial location and response hand. We found an early (∼200 ms post-stimulus conflict modulation in stimulus-contralateral parietal gamma (30-50 Hz, followed by a later alpha-band (8-12 Hz conflict modulation, suggesting an early detection of spatial conflict and inhibition of spatial location processing. Inter-regional connectivity analyses assessed via cross-frequency coupling of theta (4-8 Hz, alpha, and gamma power revealed conflict-induced shifts in cortical network interactions: Congruent trials (relative to incongruent trials had stronger coupling between frontal theta and stimulus-contrahemifield parietal alpha/gamma power, whereas incongruent trials had increased theta coupling between medial frontal and lateral frontal regions. These findings shed new light into the large-scale network dynamics of spatial conflict processing, and how those networks are shaped by oscillatory interactions.

  13. EEG source reconstruction reveals frontal-parietal dynamics of spatial conflict processing.

    Science.gov (United States)

    Cohen, Michael X; Ridderinkhof, K Richard

    2013-01-01

    Cognitive control requires the suppression of distracting information in order to focus on task-relevant information. We applied EEG source reconstruction via time-frequency linear constrained minimum variance beamforming to help elucidate the neural mechanisms involved in spatial conflict processing. Human subjects performed a Simon task, in which conflict was induced by incongruence between spatial location and response hand. We found an early (∼200 ms post-stimulus) conflict modulation in stimulus-contralateral parietal gamma (30-50 Hz), followed by a later alpha-band (8-12 Hz) conflict modulation, suggesting an early detection of spatial conflict and inhibition of spatial location processing. Inter-regional connectivity analyses assessed via cross-frequency coupling of theta (4-8 Hz), alpha, and gamma power revealed conflict-induced shifts in cortical network interactions: Congruent trials (relative to incongruent trials) had stronger coupling between frontal theta and stimulus-contrahemifield parietal alpha/gamma power, whereas incongruent trials had increased theta coupling between medial frontal and lateral frontal regions. These findings shed new light into the large-scale network dynamics of spatial conflict processing, and how those networks are shaped by oscillatory interactions.

  14. EEG Source Reconstruction Reveals Frontal-Parietal Dynamics of Spatial Conflict Processing

    Science.gov (United States)

    Cohen, Michael X; Ridderinkhof, K. Richard

    2013-01-01

    Cognitive control requires the suppression of distracting information in order to focus on task-relevant information. We applied EEG source reconstruction via time-frequency linear constrained minimum variance beamforming to help elucidate the neural mechanisms involved in spatial conflict processing. Human subjects performed a Simon task, in which conflict was induced by incongruence between spatial location and response hand. We found an early (∼200 ms post-stimulus) conflict modulation in stimulus-contralateral parietal gamma (30–50 Hz), followed by a later alpha-band (8–12 Hz) conflict modulation, suggesting an early detection of spatial conflict and inhibition of spatial location processing. Inter-regional connectivity analyses assessed via cross-frequency coupling of theta (4–8 Hz), alpha, and gamma power revealed conflict-induced shifts in cortical network interactions: Congruent trials (relative to incongruent trials) had stronger coupling between frontal theta and stimulus-contrahemifield parietal alpha/gamma power, whereas incongruent trials had increased theta coupling between medial frontal and lateral frontal regions. These findings shed new light into the large-scale network dynamics of spatial conflict processing, and how those networks are shaped by oscillatory interactions. PMID:23451201

  15. Edge reconstruction in armchair phosphorene nanoribbons revealed by discontinuous Galerkin density functional theory.

    Science.gov (United States)

    Hu, Wei; Lin, Lin; Yang, Chao

    2015-12-21

    With the help of our recently developed massively parallel DGDFT (Discontinuous Galerkin Density Functional Theory) methodology, we perform large-scale Kohn-Sham density functional theory calculations on phosphorene nanoribbons with armchair edges (ACPNRs) containing a few thousands to ten thousand atoms. The use of DGDFT allows us to systematically achieve a conventional plane wave basis set type of accuracy, but with a much smaller number (about 15) of adaptive local basis (ALB) functions per atom for this system. The relatively small number of degrees of freedom required to represent the Kohn-Sham Hamiltonian, together with the use of the pole expansion the selected inversion (PEXSI) technique that circumvents the need to diagonalize the Hamiltonian, results in a highly efficient and scalable computational scheme for analyzing the electronic structures of ACPNRs as well as their dynamics. The total wall clock time for calculating the electronic structures of large-scale ACPNRs containing 1080-10,800 atoms is only 10-25 s per self-consistent field (SCF) iteration, with accuracy fully comparable to that obtained from conventional planewave DFT calculations. For the ACPNR system, we observe that the DGDFT methodology can scale to 5000-50,000 processors. We use DGDFT based ab initio molecular dynamics (AIMD) calculations to study the thermodynamic stability of ACPNRs. Our calculations reveal that a 2 × 1 edge reconstruction appears in ACPNRs at room temperature.

  16. Alkenone-based reconstructions reveal four-phase Holocene temperature evolution for High Arctic Svalbard

    Science.gov (United States)

    van der Bilt, Willem G. M.; D'Andrea, William J.; Bakke, Jostein; Balascio, Nicholas L.; Werner, Johannes P.; Gjerde, Marthe; Bradley, Raymond S.

    2018-03-01

    Situated at the crossroads of major oceanic and atmospheric circulation patterns, the Arctic is a key component of Earth's climate system. Compounded by sea-ice feedbacks, even modest shifts in the region's heat budget drive large climate responses. This is highlighted by the observed amplified response of the Arctic to global warming. Assessing the imprint and signature of underlying forcing mechanisms require paleoclimate records, allowing us to expand our knowledge beyond the short instrumental period and contextualize ongoing warming. However, such datasets are scarce and sparse in the Arctic, limiting our ability to address these issues. Here, we present two quantitative Holocene-length paleotemperature records from the High Arctic Svalbard archipelago, situated in the climatically sensitive Arctic North Atlantic. Temperature estimates are based on U37K unsaturation ratios from sediment cores of two lakes. Our data reveal a dynamic Holocene temperature evolution, with reconstructed summer lake water temperatures spanning a range of ∼6-8 °C, and characterized by four phases. The Early Holocene was marked by an early onset (∼10.5 ka cal. BP) of insolation-driven Hypsithermal conditions, likely compounded by strengthening oceanic heat transport. This warm interval was interrupted by cooling between ∼10.5-8.3 ka cal. BP that we attribute to cooling effects from the melting Northern Hemisphere ice sheets. Temperatures declined throughout the Middle Holocene, following a gradual trend that was accentuated by two cooling steps between ∼7.8-7 ka cal. BP and around ∼4.4-4.3 ka cal. BP. These transitions coincide with a strengthening influence of Arctic water and sea-ice in the adjacent Fram Strait. During the Late Holocene (past 4 ka), temperature change decoupled from the still-declining insolation, and fluctuated around comparatively cold mean conditions. By showing that Holocene Svalbard temperatures were governed by an alternation of forcings, this study

  17. Holocene coastal paleoenvironmental record, Bay of Brest

    Science.gov (United States)

    Fernane, Assia; Gandouin, Emmanuel; Goslin, Jérôme; Penaud, Aurélie; Van Vliet lanoë, Brigitte

    2013-04-01

    Coastal areas are sensitive environments regarding the risk of submersion and the impact on biodiversity induced by salinity changes. These areas thus provide good palaeocecological archives to monitor palaeo sea level changes and the associated adaptation of different biological communities. The north-western coast of France has poorly been investigated regarding its Holocene palaeoecological signatures (Morzadec-Kerfourn, 1974; Naughton et al., 2007). Chironomids have been recognized to be an efficient tool for palaeoclimate and palaeosalinity reconstructions in lakes (Brooks, 2006), and more recently in river floodplains (Gandouin et al, 2006). In this study, environmental changes related to both climate processes and human disturbances, were reconstructed over the last 5000 years, based on pollen and chironomid assemblages from two coastal cores retrieved at Pors Milin (Brittany, NW France). The sedimentary sequences consist of terrestrial peaty layers interdigited with marine clastic deposits. The study area is composed by a sandy beach, truncating the peat, limited by a high sandy bar, and a back marsh developed at + 4 m NGF. Pollen and chironomid results reveal that anthropogenic factors would mainly control environmental changes that occurred in this sector. The disappearance of many chironomid taxa (inhabitants of main river channel) and the dramatic fall in diversity may have been induced by the development of the Merovingian forest clearance at Pors Milin. Indeed, we suggest that the development of agriculture, the river embankment and the draining of wetlands may explain the chironomid habitat loss and the subsequent fall of biodiversity. This change in faunal assemblages occurred synchronously with a decrease in the "arborean / non arborean" pollen ratio reflecting the land opening of the watershed. Several nitrophilous and anthropogenic pollen taxa reinforce our hypothesis concerning the development of agricultural and livestock farming activities at

  18. Computational reconstruction reveals a candidate magnetic biocompass to be likely irrelevant for magnetoreception

    DEFF Research Database (Denmark)

    Friis, Ida; Sjulstok, Emil; Solov'yov, Ilia A

    2017-01-01

    is supposedly facilitated through an iron rich polymer complex which couples to multiple cryptochromes. The present investigation aims to independently reconstruct this complex and describe its interaction with Drosophila melanogaster cryptochromes. The polymer complex consists of ISCA1 protein monomers...

  19. A Linear Dynamical Systems Approach to Streamflow Reconstruction Reveals History of Regime Shifts in Northern Thailand

    Science.gov (United States)

    Nguyen, Hung T. T.; Galelli, Stefano

    2018-03-01

    Catchment dynamics is not often modeled in streamflow reconstruction studies; yet, the streamflow generation process depends on both catchment state and climatic inputs. To explicitly account for this interaction, we contribute a linear dynamic model, in which streamflow is a function of both catchment state (i.e., wet/dry) and paleoclimatic proxies. The model is learned using a novel variant of the Expectation-Maximization algorithm, and it is used with a paleo drought record—the Monsoon Asia Drought Atlas—to reconstruct 406 years of streamflow for the Ping River (northern Thailand). Results for the instrumental period show that the dynamic model has higher accuracy than conventional linear regression; all performance scores improve by 45-497%. Furthermore, the reconstructed trajectory of the state variable provides valuable insights about the catchment history—e.g., regime-like behavior—thereby complementing the information contained in the reconstructed streamflow time series. The proposed technique can replace linear regression, since it only requires information on streamflow and climatic proxies (e.g., tree-rings, drought indices); furthermore, it is capable of readily generating stochastic streamflow replicates. With a marginal increase in computational requirements, the dynamic model brings more desirable features and value to streamflow reconstructions.

  20. Reconstruction of glacier variability from lake sediments reveals dynamic Holocene climate in Svalbard

    Science.gov (United States)

    van der Bilt, Willem G. M.; Bakke, Jostein; Vasskog, Kristian; D'Andrea, William J.; Bradley, Raymond S.; Ólafsdóttir, Sædis

    2015-10-01

    The Arctic is warming faster than anywhere else on Earth. Holocene proxy time-series are increasingly used to put this amplified response in perspective by understanding Arctic climate processes beyond the instrumental period. However, available datasets are scarce, unevenly distributed and often of coarse resolution. Glaciers are sensitive recorders of climate shifts and variations in rock-flour production transfer this signal to the lacustrine sediment archives of downstream lakes. Here, we present the first full Holocene record of continuous glacier variability on Svalbard from glacier-fed Lake Hajeren. This reconstruction is based on an undisturbed lake sediment core that covers the entire Holocene and resolves variability on centennial scales owing to 26 dating points. A toolbox of physical, geochemical (XRF) and magnetic proxies in combination with multivariate statistics has allowed us to fingerprint glacier activity in addition to other processes affecting the sediment record. Evidence from variations in sediment density, validated by changes in Ti concentrations, reveal glaciers remained present in the catchment following deglaciation prior to 11,300 cal BP, culminating in a Holocene maximum between 9.6 and 9.5 ka cal BP. Correspondence with freshwater pulses from Hudson Strait suggests that Early Holocene glacier advances were driven by the melting Laurentide Ice Sheet (LIS). We find that glaciers disappeared from the catchment between 7.4 and 6.7 ka cal BP, following a late Hypsithermal. Glacier reformation around 4250 cal BP marks the onset of the Neoglacial, supporting previous findings. Between 3380 and 3230 cal BP, we find evidence for a previously unreported centennial-scale glacier advance. Both events are concurrent with well-documented episodes of North Atlantic cooling. We argue that this brief forcing created suitable conditions for glaciers to reform in the catchment against a background of gradual orbital cooling. These findings highlight the

  1. EEG source reconstruction reveals frontal-parietal dynamics of spatial conflict processing

    NARCIS (Netherlands)

    Cohen, M.X.; Ridderinkhof, K.R.

    2013-01-01

    Cognitive control requires the suppression of distracting information in order to focus on task-relevant information. We applied EEG source reconstruction via time-frequency linear constrained minimum variance beamforming to help elucidate the neural mechanisms involved in spatial conflict

  2. Long-Term Data Reveal Rate and Risk Factors for Subsequent Surgeries Following Initial ACL Reconstruction

    Science.gov (United States)

    ... Rupture of the knee’s ACL is a common sports-related injury. It is associated with other knee problems, such as meniscal tears and knee instability. ... after anterior cruciate ligament reconstruction. Am J of Sports Med. 2013; ... treatment and prevention of arthritis and musculoskeletal and skin diseases; the ...

  3. Millennial precipitation reconstruction for the Jemez Mountains, New Mexico, reveals changing drought signal

    Science.gov (United States)

    Touchan, Ramzi; Woodhouse, Connie A.; Meko, David M.; Allen, Craig D.

    2011-01-01

    Drought is a recurring phenomenon in the American Southwest. Since the frequency and severity of hydrologic droughts and other hydroclimatic events are of critical importance to the ecology and rapidly growing human population of this region, knowledge of long-term natural hydroclimatic variability is valuable for resource managers and policy-makers. An October–June precipitation reconstruction for the period AD 824–2007 was developed from multi-century tree-ring records of Pseudotsuga menziesii (Douglas-fir), Pinus strobiformis (Southwestern white pine) and Pinus ponderosa (Ponderosa pine) for the Jemez Mountains in Northern New Mexico. Calibration and verification statistics for the period 1896–2007 show a high level of skill, and account for a significant portion of the observed variance (>50%) irrespective of which period is used to develop or verify the regression model. Split-sample validation supports our use of a reconstruction model based on the full period of reliable observational data (1896–2007). A recent segment of the reconstruction (2000–2006) emerges as the driest 7-year period sensed by the trees in the entire record. That this period was only moderately dry in precipitation anomaly likely indicates accentuated stress from other factors, such as warmer temperatures. Correlation field maps of actual and reconstructed October–June total precipitation, sea surface temperatures and 500-mb geopotential heights show characteristics that are similar to those indicative of El Niño–Southern Oscillation patterns, particularly with regard to ocean and atmospheric conditions in the equatorial and north Pacific. Our 1184-year reconstruction of hydroclimatic variability provides long-term perspective on current and 20th century wet and dry events in Northern New Mexico, is useful to guide expectations of future variability, aids sustainable water management, provides scenarios for drought planning and as inputs for hydrologic models under a

  4. EEG source reconstruction reveals frontal-parietal dynamics of spatial conflict processing

    OpenAIRE

    Cohen, M.X.; Ridderinkhof, K.R.

    2013-01-01

    Cognitive control requires the suppression of distracting information in order to focus on task-relevant information. We applied EEG source reconstruction via time-frequency linear constrained minimum variance beamforming to help elucidate the neural mechanisms involved in spatial conflict processing. Human subjects performed a Simon task, in which conflict was induced by incongruence between spatial location and response hand. We found an early (?200 ms post-stimulus) conflict modulation in ...

  5. Biogeochemistry of selenium isotopes: processes, cycling and paleoenvironmental applications

    NARCIS (Netherlands)

    Mitchell, K.A.

    2012-01-01

    Selenium (Se) is an essential trace element, which, with multiple oxidation states and six stable isotopes, has been suggested as a potentially powerful environmental tracer and paleoenvironmental proxy. Chapter 1 provides a literature review of the Se cycle. While the Se cycle shares some

  6. Impact of prehistoric cooking practices on paleoenvironmental proxies in shell midden constituents

    Science.gov (United States)

    Müller, Peter; Staudigel, Philip; Murray, Sean T.; Westphal, Hildegard; Swart, Peter K.

    2016-04-01

    Paleoenvironmental proxy records such as oxygen isotopes of calcareous skeletal structures like fish otoliths or mollusk shells provide highest-resolution information about environmental conditions experienced by the organism. Accumulations of such skeletal structures by ancient coastal populations in so called "shell midden" deposits provide us with sub-seasonally resolved paleoclimate records covering time spans up to several millennia. Given their high temporal resolution, these deposits are increasingly used for paleoclimate reconstructions and complement our understanding of ancient climate changes. However, gathered as comestibles, most of these skeletal remains were subject to prehistoric cooking methods prior to deposition. The associated alteration of the chemical proxy signatures as well as the subsequent error for paleoenvironmental reconstructions remained almost entirely neglected so far. Here, we present clumped isotope, conventional oxygen and carbon isotopes as well as element:Ca ratios measured in modern bivalve shells after exposing them to different prehistoric cooking methods. Our data show that most cooking methods considerably alter commonly used paleoclimate proxy systems which can lead to substantial misinterpretations of ancient climate conditions. Since the magnitude of chemical alteration is not distinguishable from natural temperature variability in most coastal settings, the alteration of shell midden constituents by prehistoric cooking remains likely unnoticed in most cases. Thus, depending on the cooking method, pre-depositional heating might have introduced considerable errors into previous paleoclimate studies. However, our data also show that clumped isotope thermometry represents a suitable diagnostic tool to detect such pre-depositional cooking events and also allows differentiating between the most commonly applied prehistoric cooking methods.

  7. Reconstructed storm tracks reveal three centuries of changing moisture delivery to North America.

    Science.gov (United States)

    Wise, Erika K; Dannenberg, Matthew P

    2017-06-01

    Moisture delivery to western North America is closely linked to variability in the westerly storm tracks of midlatitude cyclones, which are, in turn, modified by larger-scale features such as the El Niño-Southern Oscillation system. Instrumental and modeling data suggest that extratropical storm tracks may be intensifying and shifting poleward due to anthropogenic climate change, but it is difficult to separate recent trends from natural variability because of the large amount of decadal and longer variation in storm tracks and their limited instrumental record. We reconstruct cool-season, midlatitude Pacific storm-track position and intensity from 1693 to 1995 CE using existing tree-ring chronologies along with a network of newly developed chronologies from the U.S. Pacific Northwest, where small variations in storm-track position can have a major influence on hydroclimate patterns. Our results show high interannual-to-multidecadal variability in storm-track position and intensity over the past 303 years, with spectral signatures characteristic of tropical and northern Pacific influences. Comparison with reconstructions of precipitation and tropical sea surface temperature confirms the relationship between shifting drought patterns in the Pacific Northwest and storm-track variability through time and demonstrates the long-term influence of El Niño. These results allow us to place recent storm-track changes in the context of decadal and multidecadal fluctuations across the long-term record, showing that recent changes in storm-track intensity likely represent a warming-related increase amplified by natural decadal variability.

  8. Sequence exploration reveals information bias among molecular markers used in phylogenetic reconstruction for Colletotrichum species.

    Science.gov (United States)

    Rampersad, Sephra N; Hosein, Fazeeda N; Carrington, Christine Vf

    2014-01-01

    The Colletotrichum gloeosporioides species complex is among the most destructive fungal plant pathogens in the world, however, identification of isolates of quarantine importance to the intra-specific level is confounded by a number of factors that affect phylogenetic reconstruction. Information bias and quality parameters were investigated to determine whether nucleotide sequence alignments and phylogenetic trees accurately reflect the genetic diversity and phylogenetic relatedness of individuals. Sequence exploration of GAPDH, ACT, TUB2 and ITS markers indicated that the query sequences had different patterns of nucleotide substitution but were without evidence of base substitution saturation. Regions of high entropy were much more dispersed in the ACT and GAPDH marker alignments than for the ITS and TUB2 markers. A discernible bimodal gap in the genetic distance frequency histograms was produced for the ACT and GAPDH markers which indicated successful separation of intra- and inter-specific sequences in the data set. Overall, analyses indicated clear differences in the ability of these markers to phylogenetically separate individuals to the intra-specific level which coincided with information bias.

  9. Multilocus phylogenetic reconstruction of the Clavariaceae (Agaricales) reveals polyphyly of agaricoid members.

    Science.gov (United States)

    Birkebak, Joshua M; Adamčík, Slavomír; Looney, Brian P; Matheny, P Brandon

    2016-09-01

    The genus Camarophyllopsis contains species with lamellate (agaricoid) basidiomes in the family Clavariaceae (Agaricales), a group otherwise dominated by club-like (clavarioid) or branched (coralloid) forms. Previous studies have suggested that species classified in Camarophyllopsis occur in two independent lineages. We reconstructed a multilocus phylogeny of the Clavaria-Camarophyllopsis-Clavicorona clade in the Clavariaceae using RNA polymerase II second largest subunit (rpb2), nuclear ribosomal 28S, and nuclear ribosomal ITS1-5.8S-ITS2 regions data and detected three independent groups of agaricoid fungi, including the genera Camarophyllopsis, Hodophilus, and Lamelloclavaria gen. nov, which distinctly differ in their pileipellis structure. In all, nine major lineages within the Clavaria-Camarophyllopsis-Clavicorona clade were recovered: Clavaria sensu stricto, Camarophyllopsis sensu stricto, Hodophilus, the Clavaria pullei clade, the Clavaria fumosa clade, Lamelloclavaria gen. nov., the Clavaria atrofusca clade, Holocoryne (= Clavaria sect. Holocoryne), and Clavicorona Clavaria is paraphyletic and represented by five clades. Additional gene sampling is necessary to determine and confirm relatedness of these lineages before splitting Clavaria into additional genera. © 2016 by The Mycological Society of America.

  10. Reconstructing community assembly in time and space reveals enemy escape in a Western Palearctic insect community.

    Science.gov (United States)

    Stone, Graham N; Lohse, Konrad; Nicholls, James A; Fuentes-Utrilla, Pablo; Sinclair, Frazer; Schönrogge, Karsten; Csóka, György; Melika, George; Nieves-Aldrey, Jose-Luis; Pujade-Villar, Juli; Tavakoli, Majide; Askew, Richard R; Hickerson, Michael J

    2012-03-20

    How geographically widespread biological communities assemble remains a major question in ecology. Do parallel population histories allow sustained interactions (such as host-parasite or plant-pollinator) among species, or do discordant histories necessarily interrupt them? Though few empirical data exist, these issues are central to our understanding of multispecies evolutionary dynamics. Here we use hierarchical approximate Bayesian analysis of DNA sequence data for 12 herbivores and 19 parasitoids to reconstruct the assembly of an insect community spanning the Western Palearctic and assess the support for alternative host tracking and ecological sorting hypotheses. We show that assembly occurred primarily by delayed host tracking from a shared eastern origin. Herbivores escaped their enemies for millennia before parasitoid pursuit restored initial associations, with generalist parasitoids no better able to track their hosts than specialists. In contrast, ecological sorting played only a minor role. Substantial turnover in host-parasitoid associations means that coevolution must have been diffuse, probably contributing to the parasitoid generalism seen in this and similar systems. Reintegration of parasitoids after host escape shows these communities to have been unsaturated throughout their history, arguing against major roles for parasitoid niche evolution or competition during community assembly. Copyright © 2012 Elsevier Ltd. All rights reserved.

  11. Sensory Evolution and Ecology of Early Turtles Revealed by Digital Endocranial Reconstructions

    Directory of Open Access Journals (Sweden)

    Stephan Lautenschlager

    2018-02-01

    Full Text Available In the past few years, new fossil finds and novel methodological approaches have prompted intensive discussions about the phylogenetic affinities of turtles and rekindled the debate on their ecological origin, with very distinct scenarios, such as fossoriality and aquatic habitat occupation, proposed for the earliest stem-turtles. While research has focused largely on the origin of the anapsid skull and unique postcranial anatomy, little is known about the endocranial anatomy of turtles. Here, we provide 3D digital reconstructions and comparative descriptions of the brain, nasal cavity, neurovascular structures and endosseous labyrinth of Proganochelys quenstedti, one of the earliest stem-turtles, as well as other turtle taxa. Our results demonstrate that P. quenstedti retained a simple tube-like brain morphology with poorly differentiated regions and mediocre hearing and vision, but a well-developed olfactory sense. Endocast shape analysis indicates that an increase in size and regionalization of the brain took place in the course of turtle evolution, achieving an endocast diversity comparable to other amniote groups. Based on the new evidence presented herein, we further conclude that P. quenstedti was a highly terrestrial, but most likely not fossorial, taxon.

  12. Reconstructing dynamic mental models of facial expressions in prosopagnosia reveals distinct representations for identity and expression.

    Science.gov (United States)

    Richoz, Anne-Raphaëlle; Jack, Rachael E; Garrod, Oliver G B; Schyns, Philippe G; Caldara, Roberto

    2015-04-01

    The human face transmits a wealth of signals that readily provide crucial information for social interactions, such as facial identity and emotional expression. Yet, a fundamental question remains unresolved: does the face information for identity and emotional expression categorization tap into common or distinct representational systems? To address this question we tested PS, a pure case of acquired prosopagnosia with bilateral occipitotemporal lesions anatomically sparing the regions that are assumed to contribute to facial expression (de)coding (i.e., the amygdala, the insula and the posterior superior temporal sulcus--pSTS). We previously demonstrated that PS does not use information from the eye region to identify faces, but relies on the suboptimal mouth region. PS's abnormal information use for identity, coupled with her neural dissociation, provides a unique opportunity to probe the existence of a dichotomy in the face representational system. To reconstruct the mental models of the six basic facial expressions of emotion in PS and age-matched healthy observers, we used a novel reverse correlation technique tracking information use on dynamic faces. PS was comparable to controls, using all facial features to (de)code facial expressions with the exception of fear. PS's normal (de)coding of dynamic facial expressions suggests that the face system relies either on distinct representational systems for identity and expression, or dissociable cortical pathways to access them. Interestingly, PS showed a selective impairment for categorizing many static facial expressions, which could be accounted for by her lesion in the right inferior occipital gyrus. PS's advantage for dynamic facial expressions might instead relate to a functionally distinct and sufficient cortical pathway directly connecting the early visual cortex to the spared pSTS. Altogether, our data provide critical insights on the healthy and impaired face systems, question evidence of deficits

  13. Phylodynamic reconstruction reveals norovirus GII.4 epidemic expansions and their molecular determinants.

    Directory of Open Access Journals (Sweden)

    J Joukje Siebenga

    2010-05-01

    Full Text Available Noroviruses are the most common cause of viral gastroenteritis. An increase in the number of globally reported norovirus outbreaks was seen the past decade, especially for outbreaks caused by successive genogroup II genotype 4 (GII.4 variants. Whether this observed increase was due to an upswing in the number of infections, or to a surveillance artifact caused by heightened awareness and concomitant improved reporting, remained unclear. Therefore, we set out to study the population structure and changes thereof of GII.4 strains detected through systematic outbreak surveillance since the early 1990s. We collected 1383 partial polymerase and 194 full capsid GII.4 sequences. A Bayesian MCMC coalescent analysis revealed an increase in the number of GII.4 infections during the last decade. The GII.4 strains included in our analyses evolved at a rate of 4.3-9.0x10(-3 mutations per site per year, and share a most recent common ancestor in the early 1980s. Determinants of adaptation in the capsid protein were studied using different maximum likelihood approaches to identify sites subject to diversifying or directional selection and sites that co-evolved. While a number of the computationally determined adaptively evolving sites were on the surface of the capsid and possible subject to immune selection, we also detected sites that were subject to constrained or compensatory evolution due to secondary RNA structures, relevant in virus-replication. We highlight codons that may prove useful in identifying emerging novel variants, and, using these, indicate that the novel 2008 variant is more likely to cause a future epidemic than the 2007 variant. While norovirus infections are generally mild and self-limiting, more severe outcomes of infection frequently occur in elderly and immunocompromized people, and no treatment is available. The observed pattern of continually emerging novel variants of GII.4, causing elevated numbers of infections, is therefore a

  14. Strontium isotopes reveal weathering processes in lateritic covers in southern China with implications for paleogeographic reconstructions

    Science.gov (United States)

    Wei, Xiao; Wang, Shijie; Ji, Hongbing; Shi, Zhenhua

    2018-01-01

    The isotope ratios of Sr are useful tracers for studying parent material sources, weathering processes, and biogeochemical cycling. Mineralogical and geochemical investigations of two lateritic weathering covers, in an area close to the Tropic of Cancer (Guangxi Province, southern China), were undertaken to study the regional weathering processes and Sr isotopic sources. We found that weathering and decomposition of Rb- and Sr-bearing minerals change the Sr isotopic composition in weathering products (lateritic soils). Weathering of illite lowered the 87Sr/86Sr ratio whereas dissolving and leaching of carbonate minerals increased the 87Sr/86Sr ratio. An Fe nodular horizon is widely developed on the top of the weathering covers in the studied area and it differs from the lateritic soil horizon in mineral composition, construction, and elemental concentration. Furthermore, both Fe2O3 and P2O5 (concentrations) are negatively correlated with the 87Sr/86Sr ratios, suggesting fixation of apatite by Fe oxides is a controlling factor of the Sr isotopic composition in the Fe nodular horizon. The 87Sr/86Sr and Nb/Sr ratios imply the contents and proportions of Fe nodules and clay are critical in controlling the changes of Sr isotopic composition in the Fe nodular horizon. The two stages of the weathering process of carbonate rocks are revealed by the87Sr/86Sr versus Nb/Sr diagram. The 87Sr/86Sr and Rb/Sr ratios suggest that Sr isotopes in the weathering covers within the studied area are derived mainly from parent rock weathering and that the contributions from allothogenic Sr isotopes are limited. A comparison of Sr isotopic composition signatures in the weathering covers of the studied area and Guizhou Province provided insight into the Sr isotopic source and paleogeographic evolution of southern China. From the Permian to the Triassic, the continental fragment sources of the South China sedimentary basin changed significantly. In the Permian, Southern China presented the

  15. Strontium isotopes reveal weathering processes in lateritic covers in southern China with implications for paleogeographic reconstructions.

    Directory of Open Access Journals (Sweden)

    Xiao Wei

    Full Text Available The isotope ratios of Sr are useful tracers for studying parent material sources, weathering processes, and biogeochemical cycling. Mineralogical and geochemical investigations of two lateritic weathering covers, in an area close to the Tropic of Cancer (Guangxi Province, southern China, were undertaken to study the regional weathering processes and Sr isotopic sources. We found that weathering and decomposition of Rb- and Sr-bearing minerals change the Sr isotopic composition in weathering products (lateritic soils. Weathering of illite lowered the 87Sr/86Sr ratio whereas dissolving and leaching of carbonate minerals increased the 87Sr/86Sr ratio. An Fe nodular horizon is widely developed on the top of the weathering covers in the studied area and it differs from the lateritic soil horizon in mineral composition, construction, and elemental concentration. Furthermore, both Fe2O3 and P2O5 (concentrations are negatively correlated with the 87Sr/86Sr ratios, suggesting fixation of apatite by Fe oxides is a controlling factor of the Sr isotopic composition in the Fe nodular horizon. The 87Sr/86Sr and Nb/Sr ratios imply the contents and proportions of Fe nodules and clay are critical in controlling the changes of Sr isotopic composition in the Fe nodular horizon. The two stages of the weathering process of carbonate rocks are revealed by the87Sr/86Sr versus Nb/Sr diagram. The 87Sr/86Sr and Rb/Sr ratios suggest that Sr isotopes in the weathering covers within the studied area are derived mainly from parent rock weathering and that the contributions from allothogenic Sr isotopes are limited. A comparison of Sr isotopic composition signatures in the weathering covers of the studied area and Guizhou Province provided insight into the Sr isotopic source and paleogeographic evolution of southern China. From the Permian to the Triassic, the continental fragment sources of the South China sedimentary basin changed significantly. In the Permian, Southern

  16. Palinomorfos e partículas de carvões nos sedimentos holocênicos na região do alto rio Paraná e sua aplicação nas reconstruções paleoambientais e paleoclimáticas = Palynomorphs and charcoal particles in Holocene sediments of the upper Paraná river area: paleoenvironmental and paleoclimatic reconstruction

    Directory of Open Access Journals (Sweden)

    Svetlana Medeanik

    2008-10-01

    Full Text Available Foram analisadas as amostras de dois perfis num horizonte de paleossolo da planície de inundação do rio Paraná, sendo processada uma datação pelo método 14C na profundidade de 1,95 m, atingindo idade de 1.700 ± 70 anos AP. Foram avaliados pólen e esporos de plantas terrestres juntamente com as partículas de carvão. Dois estágios, no desenvolvimento paleoambiental, foram estabelecidos com respeito ao desenvolvimento da vegetação. Um estágio mais antigo é caracterizado pela distribuição limitada das florestas ripárias e predomínio de campo nas condições de clima mais seco. Quantidade notável de partículas de carvão encontradas nas amostras deste estágio sugere ocorrência de queimadas locais ou regionais durante um clima seco. No estágio mais novo, a expansão das ripárias emresposta ao aumento das precipitações atmosféricas ocorreu. Pólen de plantas cultivadas, daninhas e invasoras, encontrado nos sedimentos, indica o desenvolvimento da agricultura neste estágio. Maior freqüência de partículas de carvão em mesmos sedimentos provavelmenteindique ocorrência de queimadas locais associadas ao desmatamento da região. The samples from two profiles of flood plain deposits of the Paraná River were studied. One sample at the depth of 1.95 m was dated by 14C as 1,700 ± 70 yr BP. Palynological data and charcoal particles were obtained from fluvial sediments and paleosoil. Two principal stages in paleoenvironmental development were established. The early stage is characterized by the limited distribution of riparian forests and predominance of mesophyllous grassland under a condition of relatively dry climate. The deposition of charcoal particles in such predominant quantity was the result of local or regional burns.During the more recent stage, a natural enlargement of riparian forests occurred in conjunction with an increase in rainfall. Land use of that region may be confirmed by relatively frequent presence of

  17. Stable isotope (δ"1"3C and δ"1"5N) based interpretation of organic matter source and paleoenvironmental conditions in Al-Azraq basin, Jordan

    International Nuclear Information System (INIS)

    Ahmad, Khaldoun; Davies, Caroline

    2017-01-01

    This study examines the stable isotopes of carbon and nitrogen from cored lacustrine sediments of the Al-Azraq, an arid lake basin on the Jordan Plateau. Lacustrine sediments contain valuable records of paleoenvironmental conditions, recording local and regional responses to environmental change. Previous paleo-reconstructions on the Jordan Plateau are based on archaeology, pollen, mineralogy, and stratigraphy. The application of organic geochemistry analyses to these lake sediments identifies multiple sources of organic matter, biological production, and contributes to understanding the paleoenvironments of the Al-Azraq basin during the mid-Pleistocene period. Organic carbon concentration (Corg) provides an overview of the organic matter distribution. Carbon isotopic composition (δ13Corg) and nitrogen isotopic composition (δ15N) are indicators of organic matter sources and paleoproductivity. Magnetic susceptibility (MGSUS) measured the concentration of ferromagnetic minerals and indicated aeolian inputs. Organic geochemistry differentiated five paleoenvironmental zones with specific sources of organic matter, both aquatic and terrestrial. It identified a long period of climate wetter than the present, punctuated by a short intense period of aridity. Diagenesis plays an important role in the decomposition of organic matter and studies indicate this degradation can alter the isotopic signals of organic matter. Analyses of the isotopic signals and statistical analyses demonstrate diagenesis is not a factor in the Al-Azraq sediments in all but Zone 4 of the paleoenvironmental zones. This Zone is defined by less negative carbon isotopic composition and the presence of thick primary gypsum layers, in addition to the influx of high peaks of aeolian sediment as reflected in the magnetic susceptibility data. Stable isotope geochemistry provides detailed information on the paleoenvironments of lake sediments, and is applicable to typically challenging arid basin sediments

  18. Genome-scale reconstruction of the Streptococcus pyogenes M49 metabolic network reveals growth requirements and indicates potential drug targets

    NARCIS (Netherlands)

    Levering, J.; Fiedler, T.; Sieg, A.; van Grinsven, K.W.A.; Hering, S.; Veith, N.; Olivier, B.G.; Klett, L.; Hugenholtz, J.; Teusink, B.; Kreikemeyer, B.; Kummer, U.

    2016-01-01

    Genome-scale metabolic models comprise stoichiometric relations between metabolites, as well as associations between genes and metabolic reactions and facilitate the analysis of metabolism. We computationally reconstructed the metabolic network of the lactic acid bacterium Streptococcus pyogenes

  19. Reliable reconstruction of HIV-1 whole genome haplotypes reveals clonal interference and genetic hitchhiking among immune escape variants

    Science.gov (United States)

    2014-01-01

    Background Following transmission, HIV-1 evolves into a diverse population, and next generation sequencing enables us to detect variants occurring at low frequencies. Studying viral evolution at the level of whole genomes was hitherto not possible because next generation sequencing delivers relatively short reads. Results We here provide a proof of principle that whole HIV-1 genomes can be reliably reconstructed from short reads, and use this to study the selection of immune escape mutations at the level of whole genome haplotypes. Using realistically simulated HIV-1 populations, we demonstrate that reconstruction of complete genome haplotypes is feasible with high fidelity. We do not reconstruct all genetically distinct genomes, but each reconstructed haplotype represents one or more of the quasispecies in the HIV-1 population. We then reconstruct 30 whole genome haplotypes from published short sequence reads sampled longitudinally from a single HIV-1 infected patient. We confirm the reliability of the reconstruction by validating our predicted haplotype genes with single genome amplification sequences, and by comparing haplotype frequencies with observed epitope escape frequencies. Conclusions Phylogenetic analysis shows that the HIV-1 population undergoes selection driven evolution, with successive replacement of the viral population by novel dominant strains. We demonstrate that immune escape mutants evolve in a dependent manner with various mutations hitchhiking along with others. As a consequence of this clonal interference, selection coefficients have to be estimated for complete haplotypes and not for individual immune escapes. PMID:24996694

  20. Paleoenvironmental conditions at the loess paleosol sequence Bodrogkeresztúr in NE Hungary

    Science.gov (United States)

    Bösken, Janina; Obreht, Igor; Zeeden, Christian; Klasen, Nicole; Hambach, Ulrich; Sümegi, Pál; Lehmkuhl, Frank

    2017-04-01

    Loess paleosol sequences (LPS) have the ability to preserve past environmental and climatic conditions. Therefore, they are a widely used terrestrial archive for the reconstruction of paleoclimatic dynamics. In this study, we use several proxies (grain size distributions, geochemical analysis, rock magnetism, and color measurements) to study past environmental changes in a LPS covering the MIS 2/MIS 3 transition. Geochronological control is given by post infrared infrared stimulated luminescence dating of polymineral fine grains. The research aim lies in the reconstruction of the paleoenvironmental conditions at the loess-paleosol sequence Bodrogkeresztúr in northeastern Hungary using a multi-proxy approach. The sequence is located at the foot of the Kopasz hill, the southernmost part of the Tokaj Mountains, which belong to the Carpathian mountain range. The area is famous for the Bodrogkeresztúr-Henye Gravettian site (Lengyel, 2015). The profile contains eolian loess deposits intercalated by two paleosols. The lower paleosol overlays possibly fluvial clay (fine overbank deposits) forming the base of the profile. The luminescence samples have been tested thoroughly and have been measured with the pIR50IR290 protocol (Thiel et al., 2011). The final age assessment between 28.0±2.1 ka and 33.5±2.5 ka fits well to the established geochronologies of the Kopasz hill (Sümegi and Hertelendi, 1998) and the Tokaj section (Schatz et al., 2012). Paleoenvironmental conditions are investigated through the multi-proxy approach. The measurement of the anisotropy of magnetic susceptibility is interpreted in regard of paleowind directions. The magnetic susceptibility is enhanced in paleosols, especially in the lower one, indicating strong pedogenesis. Grain size parameters also show high clay contribution in the lower paleosol, but also indicate two distinct features of stronger wind dynamics in the loess layer in the middle of the profile (double sigmoidal fluctuations in all

  1. NEW FERMI-LAT EVENT RECONSTRUCTION REVEALS MORE HIGH-ENERGY GAMMA RAYS FROM GAMMA-RAY BURSTS

    Energy Technology Data Exchange (ETDEWEB)

    Atwood, W. B. [Santa Cruz Institute for Particle Physics, Department of Physics and Department of Astronomy and Astrophysics, University of California at Santa Cruz, Santa Cruz, CA 95064 (United States); Baldini, L. [Universita di Pisa and Istituto Nazionale di Fisica Nucleare, Sezione di Pisa, I-56127 Pisa (Italy); Bregeon, J.; Pesce-Rollins, M.; Sgro, C.; Tinivella, M. [Istituto Nazionale di Fisica Nucleare, Sezione di Pisa, I-56127 Pisa (Italy); Bruel, P. [Laboratoire Leprince-Ringuet, Ecole polytechnique, CNRS/IN2P3, Palaiseau (France); Chekhtman, A. [Center for Earth Observing and Space Research, College of Science, George Mason University, Fairfax, VA 22030 (United States); Cohen-Tanugi, J. [Laboratoire Univers et Particules de Montpellier, Universite Montpellier 2, CNRS/IN2P3, F-34095 Montpellier (France); Drlica-Wagner, A.; Omodei, N.; Rochester, L. S.; Usher, T. L. [W. W. Hansen Experimental Physics Laboratory, Kavli Institute for Particle Astrophysics and Cosmology, Department of Physics and SLAC National Accelerator Laboratory, Stanford University, Stanford, CA 94305 (United States); Granot, J. [Department of Natural Sciences, The Open University of Israel, 1 University Road, P.O. Box 808, Ra' anana 43537 (Israel); Longo, F. [Istituto Nazionale di Fisica Nucleare, Sezione di Trieste, I-34127 Trieste (Italy); Razzaque, S. [Department of Physics, University of Johannesburg, Auckland Park 2006 (South Africa); Zimmer, S., E-mail: melissa.pesce.rollins@pi.infn.it, E-mail: nicola.omodei@stanford.edu, E-mail: granot@openu.ac.il [Department of Physics, Stockholm University, AlbaNova, SE-106 91 Stockholm (Sweden)

    2013-09-01

    Based on the experience gained during the four and a half years of the mission, the Fermi-LAT Collaboration has undertaken a comprehensive revision of the event-level analysis going under the name of Pass 8. Although it is not yet finalized, we can test the improvements in the new event reconstruction with the special case of the prompt phase of bright gamma-ray bursts (GRBs), where the signal-to-noise ratio is large enough that loose selection cuts are sufficient to identify gamma rays associated with the source. Using the new event reconstruction, we have re-analyzed 10 GRBs previously detected by the Large Area Telescope (LAT) for which an X-ray/optical follow-up was possible and found four new gamma rays with energies greater than 10 GeV in addition to the seven previously known. Among these four is a 27.4 GeV gamma ray from GRB 080916C, which has a redshift of 4.35, thus making it the gamma ray with the highest intrinsic energy ({approx}147 GeV) detected from a GRB. We present here the salient aspects of the new event reconstruction and discuss the scientific implications of these new high-energy gamma rays, such as constraining extragalactic background light models, Lorentz invariance violation tests, the prompt emission mechanism, and the bulk Lorentz factor of the emitting region.

  2. Genome-scale reconstruction of the Streptococcus pyogenes M49 metabolic network reveals growth requirements and indicates potential drug targets.

    Science.gov (United States)

    Levering, Jennifer; Fiedler, Tomas; Sieg, Antje; van Grinsven, Koen W A; Hering, Silvio; Veith, Nadine; Olivier, Brett G; Klett, Lara; Hugenholtz, Jeroen; Teusink, Bas; Kreikemeyer, Bernd; Kummer, Ursula

    2016-08-20

    Genome-scale metabolic models comprise stoichiometric relations between metabolites, as well as associations between genes and metabolic reactions and facilitate the analysis of metabolism. We computationally reconstructed the metabolic network of the lactic acid bacterium Streptococcus pyogenes M49. Initially, we based the reconstruction on genome annotations and already existing and curated metabolic networks of Bacillus subtilis, Escherichia coli, Lactobacillus plantarum and Lactococcus lactis. This initial draft was manually curated with the final reconstruction accounting for 480 genes associated with 576 reactions and 558 metabolites. In order to constrain the model further, we performed growth experiments of wild type and arcA deletion strains of S. pyogenes M49 in a chemically defined medium and calculated nutrient uptake and production fluxes. We additionally performed amino acid auxotrophy experiments to test the consistency of the model. The established genome-scale model can be used to understand the growth requirements of the human pathogen S. pyogenes and define optimal and suboptimal conditions, but also to describe differences and similarities between S. pyogenes and related lactic acid bacteria such as L. lactis in order to find strategies to reduce the growth of the pathogen and propose drug targets. Copyright © 2016 Elsevier B.V. All rights reserved.

  3. Reconstituição paleoambiental do Lago Santa Ninha, Várzea do Lago Grande de Curuai, Pará, Brasil Paleoenvironmental reconstruction of an Amazon floodplain lake, Lago Santa Ninha, Varzea do Lago Grande de Curuai, Pará, Brasil

    Directory of Open Access Journals (Sweden)

    Luciane Silva Moreira

    2009-09-01

    Full Text Available Este estudo teve por objetivo reconstituir as mudanças paleoambientais e paleohidrológicas no baixo Amazonas. Um testemunho de sedimento foi coletado no Lago Santa Ninha, na várzea do Lago Grande de Curuai, localizada na margem direita do Rio Amazonas a aproximadamente 850 km da foz. O teor de água, a granulometria, as datações com carbono 14, os conteúdos de carbono orgânico e nitrogênio total e o isótopo estável do carbono (δ13C foram utilizados para determinar os processos sedimentares a que o meio esteve submetido. O testemunho estudado possui 270 cm de comprimento que corresponde a um período de 5600 anos cal AP. Este estudo colocou em evidência diferentes ambientes sedimentares: na base do testemunho até 4900 anos cal AP há uma vegetação inundada que foi gradualmente substituida por bancos de gramíneas e por uma planicie com secas sazonais em 4000 anos cal AP até alcançar, desde 600 anos AP as condições atuais deste lago. Estas alterações podem ter ocorrido em decorrência de mudanças no ciclo hidrológico do Rio Amazonas que, por sua vez, também são reflexos de alterações climáticas.Physical, chemical and geochemical characteristics of lacustrine sediments were studied to reconstruct paleohydrologyical control on sedimentation in an Amazonian floodplain. A core was collected at the Lago Grande de Curuai floodplain, in the Santa Ninha Lake, located on the right margin of the Amazon River at 850 km of the estuary. Water content, granulometry, radiocarbon dating, organic carbon, nitrogen content and δ13C were used to characterize the sedimentary processes. The core is 270 cm-long which corresponds to 5600 cal years BP. The core points out different sedimentary environments: flooded vegetation at the base of the core till 4900 cal years BP is substituted by grass banks changing to a floodplain encompassing prolonged annual dryness at 4000 cal years BP. Since 600 cal years BP, the present day Varzea Lake

  4. Paleoenvironmental conditions across the Jurassic-Cretaceous boundary in central-eastern Mexico

    Science.gov (United States)

    Martínez-Yáñez, Mario; Núñez-Useche, Fernando; López Martínez, Rafael; Gardner, Rand D.

    2017-08-01

    The Padni section of central-eastern Mexico is characterized by pelagic, organic-rich carbonates and shales dated in this study by calpionellid biostratigraphy to the late Tithonian-late Berriasian time interval. Microfacies, pyrite framboid size, spectrometric gamma-ray and mineralogical data are herein integrated in order to reconstruct the paleoenvironmental change during the Jurassic-Cretaceous boundary. Deposits of the late Tithonian-early Berriasian are characterized by laminated, organic-rich facies with abundant radiolarian, tiny pyrite framboids and low Th/U ratios. They are linked to upwelling in a semi-restricted basin, high marine productivity and anoxic bottom waters. The early incursions of Tethyan oceanic waters into the proto-Gulf of Mexico occurred during late Tithonian as attested the appearance of calpionellids. Short and intermittent accumulations of saccocomids during early Berriasian suggest episodes of sporadic connection between the Tethys, the proto-Atlantic and the Pacific ocean during sea-level rise events. A full and stable connection between the Tethys and proto-Gulf of Mexico was established until the late Berriasian. This event is supported by the presence of open marine and bioturbated facies with a framboid population typical of dysoxic conditions, higher Th/U ratios and a decreasing pattern of the total organic carbon content. In addition to highlighting the replenishment of the oxygen supply to the basin, this facies also points to a younger age for the finalization of the Yucatán Block rotation and the end of the Gulf of Mexico opening. Deposition of the studied section occurred mostly during a Tithonian-Berriasian arid phase reported in other Tethyan and Atlantic regions. The similarity between the discrete segments of the standard gamma-ray curve defined in the studied outcrop and those reported from subsurface implies their regional continuity allowing their use for correlation purposes.

  5. Metagenome-based metabolic reconstruction reveals the ecophysiological function of Epsilonproteobacteria in a hydrocarbon-contaminated sulfidic aquifer

    Directory of Open Access Journals (Sweden)

    Andreas Hardy Keller

    2015-12-01

    Full Text Available The population genome of an uncultured bacterium assigned to the Campylobacterales (Epsilonproteobacteria was reconstructed from a metagenome dataset obtained by whole-genome shotgun pyrosequencing. Genomic DNA was extracted from a sulfate-reducing, m-xylene-mineralizing enrichment culture isolated from groundwater of a benzene-contaminated sulfidic aquifer. The identical epsilonproteobacterial phylotype has previously been detected in toluene- or benzene-mineralizing, sulfate-reducing consortia enriched from the same site. Previous stable isotope probing experiments with 13C6-labeled benzene suggested that this phylotype assimilates benzene-derived carbon in a syntrophic benzene-mineralizing consortium that uses sulfate as terminal electron acceptor. However, the type of energy metabolism and the ecophysiological function of this epsilonproteobacterium within aromatic hydrocarbon-degrading consortia and in the sulfidic aquifer are poorly understood.Annotation of the epsilonproteobacterial population genome suggests that the bacterium plays a key role in sulfur cycling as indicated by the presence of a sqr gene encoding a sulfide quinone oxidoreductase and psr genes encoding a polysulfide reductase. It may gain energy by using sulfide or hydrogen/formate as electron donors. Polysulfide, fumarate, as well as oxygen are potential electron acceptors. Auto- or mixotrophic carbon metabolism seems plausible since a complete reductive citric acid cycle was detected. Thus the bacterium can thrive in pristine groundwater as well as in hydrocarbon-contaminated aquifers. In hydrocarbon-contaminated sulfidic habitats, the epsilonproteobacterium may generate energy by coupling the oxidation of hydrogen or formate and highly abundant sulfide with the reduction of fumarate and/or polysulfide, accompanied by efficient assimilation of acetate produced during fermentation or incomplete oxidation of hydrocarbons. The highly efficient assimilation of acetate was

  6. Metagenome-Based Metabolic Reconstruction Reveals the Ecophysiological Function of Epsilonproteobacteria in a Hydrocarbon-Contaminated Sulfidic Aquifer.

    Science.gov (United States)

    Keller, Andreas H; Schleinitz, Kathleen M; Starke, Robert; Bertilsson, Stefan; Vogt, Carsten; Kleinsteuber, Sabine

    2015-01-01

    The population genome of an uncultured bacterium assigned to the Campylobacterales (Epsilonproteobacteria) was reconstructed from a metagenome dataset obtained by whole-genome shotgun pyrosequencing. Genomic DNA was extracted from a sulfate-reducing, m-xylene-mineralizing enrichment culture isolated from groundwater of a benzene-contaminated sulfidic aquifer. The identical epsilonproteobacterial phylotype has previously been detected in toluene- or benzene-mineralizing, sulfate-reducing consortia enriched from the same site. Previous stable isotope probing (SIP) experiments with (13)C6-labeled benzene suggested that this phylotype assimilates benzene-derived carbon in a syntrophic benzene-mineralizing consortium that uses sulfate as terminal electron acceptor. However, the type of energy metabolism and the ecophysiological function of this epsilonproteobacterium within aromatic hydrocarbon-degrading consortia and in the sulfidic aquifer are poorly understood. Annotation of the epsilonproteobacterial population genome suggests that the bacterium plays a key role in sulfur cycling as indicated by the presence of an sqr gene encoding a sulfide quinone oxidoreductase and psr genes encoding a polysulfide reductase. It may gain energy by using sulfide or hydrogen/formate as electron donors. Polysulfide, fumarate, as well as oxygen are potential electron acceptors. Auto- or mixotrophic carbon metabolism seems plausible since a complete reductive citric acid cycle was detected. Thus the bacterium can thrive in pristine groundwater as well as in hydrocarbon-contaminated aquifers. In hydrocarbon-contaminated sulfidic habitats, the epsilonproteobacterium may generate energy by coupling the oxidation of hydrogen or formate and highly abundant sulfide with the reduction of fumarate and/or polysulfide, accompanied by efficient assimilation of acetate produced during fermentation or incomplete oxidation of hydrocarbons. The highly efficient assimilation of acetate was recently

  7. A homologous mapping method for three-dimensional reconstruction of protein networks reveals disease-associated mutations.

    Science.gov (United States)

    Huang, Sing-Han; Lo, Yu-Shu; Luo, Yong-Chun; Tseng, Yu-Yao; Yang, Jinn-Moon

    2018-03-19

    One of the crucial steps toward understanding the associations among molecular interactions, pathways, and diseases in a cell is to investigate detailed atomic protein-protein interactions (PPIs) in the structural interactome. Despite the availability of large-scale methods for analyzing PPI networks, these methods often focused on PPI networks using genome-scale data and/or known experimental PPIs. However, these methods are unable to provide structurally resolved interaction residues and their conservations in PPI networks. Here, we reconstructed a human three-dimensional (3D) structural PPI network (hDiSNet) with the detailed atomic binding models and disease-associated mutations by enhancing our PPI families and 3D-domain interologs from 60,618 structural complexes and complete genome database with 6,352,363 protein sequences across 2274 species. hDiSNet is a scale-free network (γ = 2.05), which consists of 5177 proteins and 19,239 PPIs with 5843 mutations. These 19,239 structurally resolved PPIs not only expanded the number of PPIs compared to present structural PPI network, but also achieved higher agreement with gene ontology similarities and higher co-expression correlation than the ones of 181,868 experimental PPIs recorded in public databases. Among 5843 mutations, 1653 and 790 mutations involved in interacting domains and contacting residues, respectively, are highly related to diseases. Our hDiSNet can provide detailed atomic interactions of human disease and their associated proteins with mutations. Our results show that the disease-related mutations are often located at the contacting residues forming the hydrogen bonds or conserved in the PPI family. In addition, hDiSNet provides the insights of the FGFR (EGFR)-MAPK pathway for interpreting the mechanisms of breast cancer and ErbB signaling pathway in brain cancer. Our results demonstrate that hDiSNet can explore structural-based interactions insights for understanding the mechanisms of disease

  8. Electron microscopy and three-dimensional reconstruction of native thin filaments reveal species-specific differences in regulatory strand densities

    Energy Technology Data Exchange (ETDEWEB)

    Cammarato, Anthony, E-mail: acammara@burnham.org [Department of Physiology and Biophysics, Boston University School of Medicine, 72 East Concord Street, Boston, MA 02118 (United States); Craig, Roger [Department of Cell Biology, University of Massachusetts Medical School, 55 Lake Avenue North, Worcester, MA 01655 (United States); Lehman, William [Department of Physiology and Biophysics, Boston University School of Medicine, 72 East Concord Street, Boston, MA 02118 (United States)

    2010-01-01

    Throughout the animal kingdom striated muscle contraction is regulated by the thin filament troponin-tropomyosin complex. Homologous regulatory components are shared among vertebrate and arthropod muscles; however, unique protein extensions and/or components characterize the latter. The Troponin T (TnT) isoforms of Drosophila indirect flight and tarantula femur muscle for example contain distinct C-terminal extensions and are {approx}20% larger overall than their vertebrate counterpart. Using electron microscopy and three-dimensional helical reconstruction of native Drosophila, tarantula and frog muscle thin filaments we have identified species-specific differences in tropomyosin regulatory strand densities. The strands on the arthropod thin filaments were significantly larger in diameter than those from vertebrates, although not significantly different from each other. These findings reflect differences in the regulatory troponin-tropomyosin complex, which are likely due to the larger TnT molecules aligning and extending along much of the tropomyosin strands' length. Such an arrangement potentially alters the physical properties of the regulatory strands and may help establish contractile characteristics unique to certain arthropod muscles.

  9. Electron microscopy and three-dimensional reconstruction of native thin filaments reveal species-specific differences in regulatory strand densities

    International Nuclear Information System (INIS)

    Cammarato, Anthony; Craig, Roger; Lehman, William

    2010-01-01

    Throughout the animal kingdom striated muscle contraction is regulated by the thin filament troponin-tropomyosin complex. Homologous regulatory components are shared among vertebrate and arthropod muscles; however, unique protein extensions and/or components characterize the latter. The Troponin T (TnT) isoforms of Drosophila indirect flight and tarantula femur muscle for example contain distinct C-terminal extensions and are ∼20% larger overall than their vertebrate counterpart. Using electron microscopy and three-dimensional helical reconstruction of native Drosophila, tarantula and frog muscle thin filaments we have identified species-specific differences in tropomyosin regulatory strand densities. The strands on the arthropod thin filaments were significantly larger in diameter than those from vertebrates, although not significantly different from each other. These findings reflect differences in the regulatory troponin-tropomyosin complex, which are likely due to the larger TnT molecules aligning and extending along much of the tropomyosin strands' length. Such an arrangement potentially alters the physical properties of the regulatory strands and may help establish contractile characteristics unique to certain arthropod muscles.

  10. Reconstructed ancestral enzymes reveal that negative selection drove the evolution of substrate specificity in ADP-dependent kinases.

    Science.gov (United States)

    Castro-Fernandez, Víctor; Herrera-Morande, Alejandra; Zamora, Ricardo; Merino, Felipe; Gonzalez-Ordenes, Felipe; Padilla-Salinas, Felipe; Pereira, Humberto M; Brandão-Neto, Jose; Garratt, Richard C; Guixe, Victoria

    2017-09-22

    One central goal in molecular evolution is to pinpoint the mechanisms and evolutionary forces that cause an enzyme to change its substrate specificity; however, these processes remain largely unexplored. Using the glycolytic ADP-dependent kinases of archaea, including the orders Thermococcales , Methanosarcinales , and Methanococcales , as a model and employing an approach involving paleoenzymology, evolutionary statistics, and protein structural analysis, we could track changes in substrate specificity during ADP-dependent kinase evolution along with the structural determinants of these changes. To do so, we studied five key resurrected ancestral enzymes as well as their extant counterparts. We found that a major shift in function from a bifunctional ancestor that could phosphorylate either glucose or fructose 6-phosphate (fructose-6-P) as a substrate to a fructose 6-P-specific enzyme was started by a single amino acid substitution resulting in negative selection with a ground-state mode against glucose and a subsequent 1,600-fold change in specificity of the ancestral protein. This change rendered the residual phosphorylation of glucose a promiscuous and physiologically irrelevant activity, highlighting how promiscuity may be an evolutionary vestige of ancestral enzyme activities, which have been eliminated over time. We also could reconstruct the evolutionary history of substrate utilization by using an evolutionary model of discrete binary characters, indicating that substrate uses can be discretely lost or acquired during enzyme evolution. These findings exemplify how negative selection and subtle enzyme changes can lead to major evolutionary shifts in function, which can subsequently generate important adaptive advantages, for example, in improving glycolytic efficiency in Thermococcales . © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

  11. Prospects for reconstructing paleoenvironmental conditions from organic compounds in polar snow and ice

    Science.gov (United States)

    Giorio, Chiara; Kehrwald, Natalie; Barbante, Carlo; Kalberer, Markus; King, Amy C. F.; Thomas, Elizabeth R.; Wolff, Eric W.; Zennaro, Piero

    2018-03-01

    Polar ice cores provide information about past climate and environmental changes over periods ranging from a few years up to 800,000 years. The majority of chemical studies have focused on determining inorganic components, such as major ions and trace elements as well as on their isotopic fingerprint. In this paper, we review the different classes of organic compounds that might yield environmental information, discussing existing research and what is needed to improve knowledge. We also discuss the problems of sampling, analysis and interpretation of organic molecules in ice. This review highlights the great potential for organic compounds to be used as proxies for anthropogenic activities, past fire events from different types of biomass, terrestrial biogenic emissions and marine biological activity, along with the possibility of inferring past temperature fluctuations and even large-scale climate variability. In parallel, comprehensive research needs to be done to assess the atmospheric stability of these compounds, their ability to be transported long distances in the atmosphere, and their stability in the archive in order to better interpret their fluxes in ice cores. In addition, specific decontamination procedures, analytical methods with low detection limits (ng/L or lower), fast analysis time and low sample requests need to be developed in order to ensure a good time resolution in the archive.

  12. Prospects for reconstructing paleoenvironmental conditions from organic compounds in polar snow and ice

    Science.gov (United States)

    Giorio, Chiara; Kehrwald, Natalie; Barbante, Carlo; Kalberer, Markus; King, Amy C.F.; Thomas, Elizabeth R.; Wolff, Eric W.; Zennaro, Piero

    2018-01-01

    Polar ice cores provide information about past climate and environmental changes over periods ranging from a few years up to 800,000 years. The majority of chemical studies have focused on determining inorganic components, such as major ions and trace elements as well as on their isotopic fingerprint. In this paper, we review the different classes of organic compounds that might yield environmental information, discussing existing research and what is needed to improve knowledge. We also discuss the problems of sampling, analysis and interpretation of organic molecules in ice. This review highlights the great potential for organic compounds to be used as proxies for anthropogenic activities, past fire events from different types of biomass, terrestrial biogenic emissions and marine biological activity, along with the possibility of inferring past temperature fluctuations and even large-scale climate variability. In parallel, comprehensive research needs to be done to assess the atmospheric stability of these compounds, their ability to be transported long distances in the atmosphere, and their stability in the archive in order to better interpret their fluxes in ice cores. In addition, specific decontamination procedures, analytical methods with low detection limits (ng/L or lower), fast analysis time and low sample requests need to be developed in order to ensure a good time resolution in the archive.

  13. Appraising timing response of paleoenvironmental proxies to the Bond cycle in the western Mediterranean over the last 20 kyr

    Science.gov (United States)

    Rodrigo-Gámiz, Marta; Martínez-Ruiz, Francisca; Rodríguez-Tovar, Francisco J.; Pardo-Igúzquiza, Eulogio; Ortega-Huertas, Miguel

    2018-04-01

    The timing of climate responses to the Bond cycle is investigated in the western Mediterranean. Periodicities had been previously reported in a marine sediment record from this region spanning the last 20 kyr, and registered by diverse paleoenvironmental proxies, in particular those associated with terrigenous input, redox conditions, productivity, sea surface temperature (SST) and salinity. Further cross-spectral analyses on these time series reveal leads-lags in the 1400 year climate cycle. Considering as reference a terrigenous input proxy (the K/Al ratio), all the paleoenvironmental proxies displayed time shifts varying from ca. 700 year to ca. 350 year. SST and salinity variations show a first leaded response with the inflow of cold and less salty Atlantic waters. Followed by a time lead of 525 year, progresively arid conditions with an increase of eolian dust transport to the area, given by the Zr/Al signal, are observed. The intensification of dust transport could have triggered a latest biological response, lead by 350 year, with an increase of productivity, as suggested by the Ba/Al ratio. Lastly changes in the Mediterranean thermohaline circulation, indicated by a selected redox proxy (the U/Th ratio), are observed. These results support that the oceanic response triggered the atmospheric response to the Bond cycle in the western Mediterranean. Changes in the North Atlantic Oscillation mode and in the Inter-Tropical Convergence Zone migrations with variations in the monsoon activity or Saharan winds system, are considered as main forcing mechanisms, with a complex relationship of the involved phenomena.

  14. The distribution of organic carbon fractions in a typical loess-paleosol profile and its paleoenvironmental significance

    Directory of Open Access Journals (Sweden)

    Qingqing Zhang

    2018-04-01

    Full Text Available Background The loess-paleosol sequence on the Loess Plateau has been considered an important paleoclimatic archive to study global climatic and environmental changes in the Quaternary. So far, little attention has been paid to the characteristics of soil organic carbon fractions in loess-paleosol sequences, which may provide valuable information for exploring the evolution of climate and environment in the Quaternary on the Loess Plateau. Methods In order to explore the significance of mineral-associated organic carbon to total organic carbon (MOC/TOC ratios in the loess-paleosol sequence for reconstructing paleoenvironmental and paleoclimatic evolution in the Quaternary on the Loess Plateau, we selected a typical loess-paleosol profile in Chunhua county, Xianyang city, Shaanxi province, as the research object. The content of total organic carbon (TOC and MOC/TOC ratio in each loess and paleosol layers of the Chunhua loess-paleosol profile were analyzed, together with the paleoclimatic proxies, such as soil grain size, CaCO3 content and their correlations with organic carbon parameters. Results The main results were as follows: (1 the total content of soil organic carbon and MOC/TOC ratios were generally higher in paleosol layers than in the underlying loess layers of the Chunhua loess-paleosol profile. Compared to total organic carbon content, MOC/TOC ratios changed more obviously in soil layers below a paleosol layer S8; (2 soil clay content and median grain size (Md (ϕ were higher in paleosol than in the underlying loess, while CaCO3 content showed an opposite tendency. In the Chunhua profile, the distribution characteristics of the three paleoclimatic proxies showed good indications of paleoclimate changes in the Quaternary; (3 in the Chunhua loess-paleosol profile, MOC/TOC ratios were positively correlated with clay content and median grain size (ϕ, while negatively correlated with CaCO3 content, and the correlations were more significant

  15. The distribution of organic carbon fractions in a typical loess-paleosol profile and its paleoenvironmental significance

    Science.gov (United States)

    Hu, Feinan; Huo, Na; Shang, Yingni; Chang, Wenqian

    2018-01-01

    Background The loess-paleosol sequence on the Loess Plateau has been considered an important paleoclimatic archive to study global climatic and environmental changes in the Quaternary. So far, little attention has been paid to the characteristics of soil organic carbon fractions in loess-paleosol sequences, which may provide valuable information for exploring the evolution of climate and environment in the Quaternary on the Loess Plateau. Methods In order to explore the significance of mineral-associated organic carbon to total organic carbon (MOC/TOC) ratios in the loess-paleosol sequence for reconstructing paleoenvironmental and paleoclimatic evolution in the Quaternary on the Loess Plateau, we selected a typical loess-paleosol profile in Chunhua county, Xianyang city, Shaanxi province, as the research object. The content of total organic carbon (TOC) and MOC/TOC ratio in each loess and paleosol layers of the Chunhua loess-paleosol profile were analyzed, together with the paleoclimatic proxies, such as soil grain size, CaCO3 content and their correlations with organic carbon parameters. Results The main results were as follows: (1) the total content of soil organic carbon and MOC/TOC ratios were generally higher in paleosol layers than in the underlying loess layers of the Chunhua loess-paleosol profile. Compared to total organic carbon content, MOC/TOC ratios changed more obviously in soil layers below a paleosol layer S8; (2) soil clay content and median grain size (Md (ϕ)) were higher in paleosol than in the underlying loess, while CaCO3 content showed an opposite tendency. In the Chunhua profile, the distribution characteristics of the three paleoclimatic proxies showed good indications of paleoclimate changes in the Quaternary; (3) in the Chunhua loess-paleosol profile, MOC/TOC ratios were positively correlated with clay content and median grain size (ϕ), while negatively correlated with CaCO3 content, and the correlations were more significant in soil

  16. Multigene phylogenetic reconstruction of the Tubulinea (Amoebozoa) corroborates four of the six major lineages, while additionally revealing that shell composition does not predict phylogeny in the Arcellinida.

    Science.gov (United States)

    Lahr, Daniel J G; Grant, Jessica R; Katz, Laura A

    2013-05-01

    Tubulinea is a phylogenetically stable higher-level taxon within Amoebozoa, morphologically characterized by monoaxially streaming and cylindrical pseudopods. Contemporary phylogenetic reconstructions have largely relied on SSU rDNA, and to a lesser extent, on actin genes to reveal the relationships among these organisms. Additionally, the test (shell) forming Arcellinida, one of the most species-rich amoebozoan groups, is nested within Tubulinea and suffers from substantial under-sampling of taxa. Here, we increase taxonomic and gene sampling within the Tubulinea, characterizing molecular data for 22 taxa and six genes (SSU rDNA, actin, α- and β-tubulin, elongation factor 2 and the 14-3-3 regulatory protein). We perform concatenated phylogenetic analyses using these genes as well as approximately unbiased tests to assess evolutionary relationships within the Tubulinea. We confirm the monophyly of Tubulinea and four of the six included lineages (Echinamoeboidea, Leptomyxida, Amoebida and Poseidonida). Arcellinida and Hartmanellidae, the remaining lineages, are not monophyletic in our reconstructions, although statistical testing does not allow rejection of either group. We further investigate more fine-grained morphological evolution of previously defined groups, concluding that relationships within Arcellinida are more consistent with general test and aperture shape than with test composition. We also discuss the implications of this phylogeny for interpretations of the Precambrian fossil record of testate amoebae. Copyright © 2013 Elsevier GmbH. All rights reserved.

  17. Reconstructing ancient river dynamics from the stratigraphic record: can lessons from the past inform our future?

    Science.gov (United States)

    Hajek, E. A.; Chamberlin, E.; Baisden, T.

    2014-12-01

    The richness of the deep-time record and its potential for revealing important characteristics of ancient fluvial landscapes has been demonstrated time and again, including compelling examples of rivers altering their behavior in response to changes in vegetation patterns or abrupt shifts in water and sediment discharge. At present, reconstructions of ancient river and floodplain dynamics are commonly qualitative, and when quantitative metrics are used, it is often for comparison among ancient deposits. Without being able to reconstruct, more comprehensively, important aspects of ancient river and floodplains dynamics, this information has only anecdotal relevance for evaluating and managing present-day landscapes. While methods for reconstructing hydrodynamic and morphodynamic aspects of ancient rivers and floodplains are useful, uncertainties associated with these snapshots complicate the ability to translate observations from geologic to engineering scales, thereby limiting the utility of insight from Earth's past in decision-making and development of sustainable landscape-management practices for modern fluvial landscapes. Here, we explore the degree to which paleomorphodynamic reconstructions from ancient channel and floodplain deposits can be used to make specific, quantitative inferences about ancient river dynamics. We compare a suite of paleoenvironmental measurements from a variety of ancient fluvial deposits (including reconstructions of paleoflow depth, paleoslope, paleo-channel mobility, the caliber of paleo-sediment load, and paleo-floodplain heterogeneity) in an effort to evaluate sampling and empirical uncertainties associated with these methods and identify promising avenues for developing more detailed landscape reconstructions. This work is aimed at helping to develop strategies for extracting practicable information from the stratigraphic record that is relevant for sustainably managing and predicting changes in today's environments.

  18. The Early Toarcian oceanic anoxic event: Paleoenvironmental and paleoclimatic change across the Alpine Tethys (Switzerland)

    Science.gov (United States)

    Fantasia, Alicia; Föllmi, Karl B.; Adatte, Thierry; Spangenberg, Jorge E.; Montero-Serrano, Jean-Carlos

    2018-03-01

    Paleoenvironmental and paleoclimatic change associated with the Toarcian oceanic anoxic event (T-OAE) was evaluated in five successions located in Switzerland. They represent different paleogeographic settings across the Alpine Tethys: the northern shelf (Gipf, Riniken and Rietheim), the Sub-Briançonnais basin (Creux de l'Ours), and the Lombardian basin (Breggia). The multi-proxy approach chosen (whole-rock and clay mineralogy, phosphorus, major and trace elements) shows that local environmental conditions modulated the response to the T-OAE across the Alpine Tethys. On the northern shelf and in the Sub-Briançonnais basin, high kaolinite contents and detrital proxies (detrital index, Ti, Zr, Si) in the T-OAE interval suggest a change towards a warmer and more humid climate coupled with an increase in the chemical weathering rates. In contrast, low kaolinite content in the Lombardian basin is likely related to a more arid climate along the southern Tethys margin and/or to a deeper and more distal setting. Redox-sensitive trace-element (V, Mo, Cu, Ni) enrichments in the T-OAE intervals reveal that dysoxic to anoxic conditions developed on the northern shelf, whereas reducing conditions were less severe in the Sub-Briançonnais basin. In the Lombardian basin well-oxygenated bottom water conditions prevailed. Phosphorus (P) speciation analysis was performed at Riniken and Creux de l'Ours. This is the first report of P speciation data for T-OAE sections, clearly suggesting that high P contents during this time interval are mainly linked to the presence of an authigenic phases and fish remains. The development of oxygen-depleted conditions during the T-OAE seems to have promoted the release of the organic-bound P back into the water column, thereby further sustaining primary productivity in a positive feedback loop.

  19. Paleoenvironmental evolution of the coastal plain of Southern Brazil: palynological data from a Holocene core in Santa Catarina State

    Directory of Open Access Journals (Sweden)

    LIDIA A. KUHN

    2017-10-01

    Full Text Available ABSTRACT This paper presents a paleoenvironmental reconstruction from palynological analyses of a sedimentary core of Holocene age, drilled at municipality of Garopaba (Santa Catarina, Southern Brazil. A total of 46 samples was collected for palynological analyses in the 450 cm-long core PCSC-3, as also three samples for radiocarbon dating and granulometric analyses. The palynological content includes 84 taxa related to pollen grains of angiosperms (38 and gimnosperm (3, spores of pteridophyta (16 and bryophyta (2, spores of fungi (8, algae (3, acritarchs (3, dinoflagellate cysts (2 and microforaminiferal linings (1. Three specimens of acritarchs are described and illustrated in detail. Three palynological phases were defined based on changes in assemblages: Phase I, Phase II and Phase III. The Phase I is characterized as a lagoonal paleoenvironment with marine influence from the beginning of the sedimentation (5390 cal yr BP, based on occurrences of acritarchs, dinoflagellate cysts and microforaminiferal linings. The Phase II (3032 yr BP until 858 cal yr BP also is characterized by a lagoonal paleoenvironment, however, presented decrease in percentage of marine elements and increase in freshwater algae record, suggesting less marine influence in the lagoonal body. In Phase III (last 856 years, underwater sedimentation prevailed, under swamp-like conditions.

  20. Paleoenvironmental change in the southern Kenya Rift System: A case study based on the Pleistocene Olorgesailie and Oltulelei Formations

    Science.gov (United States)

    Behrensmeyer, A. K.; Potts, R.; Deino, A. L.

    2017-12-01

    prevailed in the Olorgesailie Basin to the north. This sets the stage for paleoenvironmental reconstructions that relate closely in time and space to documented changes in the archeology and faunas, which record critical transitions in technology and mammalian communities over the past 1.2 ma.

  1. The Alleret Maar lacustrine sequence (French Massif Central): a 150 ka long early-middle Pleistocene continental paleoenvironmental record.

    Science.gov (United States)

    Nomade, S.; Pastre, J.; Guillou, H.; Gauthier, A.; Scaillet, S.

    2008-12-01

    Lacustrine maar sequences of the French Massif Central are of great interest for paleoclimatic and paleoenvironmental reconstructions of mid-latitudes Quaternary continental environments. In particular, the western Velay region yields exceptional sequences spanning the last 450 ka (Reille et al., J. Quat. Sci. 2000). However, older sequences remain largely unknown despite the presence of interbedded alkaline tephras allowing precise absolute radiochronological control of many lacustrine squences. The Alleret maar is a 1500 m wide phreatomagmatic crater that provides a long lacustrine sequence (41 m). The upper part of this sequence (AL2 core, 14.6 m) was studied between 2005 and 2006 (Pastre et al., C. R. Acad Sci, 2007). A 39Ar/40Ar date (557 ± 5ka) obtained from an interbedded tephra layer located at 7m as well as the associated pollen data attribute the beginning of this sequence to the MIS 15. Thanks to the AL3 core recovered in 2005 (40.6 m, CNRS Meudon) several new tephra layers were discovered in the bottom part of this lacustrine sequence. Three new 39Ar/40Ar ages (single crystal analyses) from trachytic tephra layers were obtained at the LSCE Argon Laboratory (France). These layers are located at -30.2, -36.2 and -39.2m. Ages obtained relative to the ACR-2 flux standard (1,201Ma, Kuiper et al., Science, 2008) range from 692 ± 6 ka (MSWD: 2.3, n=18) for the youngest (-30.2m) to 726 ± 9Ka Ka (MSWD: 2.2, n=12) for the lowest tephra located at -39.2m. These new dates indicate a relatively homogeneous deposition rate of 3.5cm/ka and that the last 10 meters cover the MIS 17-MIS18 period. According to these current radiochronological data the complete lacustrine sequence last more than 150ka. Ongoing sedimentary and pollen studies will allow to extend the paleoenvironmental and paleoclimatic records of the French Massif Central towards the beginning of the early middle Pleistocene.

  2. Reconstruction of the Arctic Ocean environment during the Eocene Azolla interval using geochemical proxies and climate modeling. Geologica Ultraiectina (331)

    NARCIS (Netherlands)

    Speelman, E.N.

    2010-01-01

    With the realization that the Arctic Ocean was covered with enormous quantities of the aquatic floating fern Azolla 49 Myrs ago, new questions regarding the Eocene conditions facilitating these blooms arose. This dissertation describes the reconstruction of paleo-environmental conditions

  3. Using Isotopes to Reconstruct Mammalian Diet, Migration and Paleoenvironment for Hominin Sites in Indonesia

    Science.gov (United States)

    Wershow, H.; Janssen, R.; Vonhof, H.; Lubbe, J. V. D.; Joordens, J. J.; Koutamanis, D. S.; Puspaningrum, M. R.; de Vos, J.; Reijmer, J.

    2015-12-01

    Climate plays a prominent role in ecosystem development in the biodiversity hotspot Sundaland (Malaysia and western Indonesia) throughout the Quaternary. Recurrent isolation and connection of the islands to mainland Asia due to sea level fluctuations has enabled repeated biotic migrations and encouraged genetic speciation. These migration waves also brought Homo erectus to Java. Together with extensive and well-documented collections of other terrestrial species, these hominin fossils form faunal assemblages of which the paleoenvironmental and paleogeographical background is poorly known. Using carbon, oxygen and strontium isotopes, we have reconstructed the paleoenvironmental and paleoecological conditions of several Holocene and Pleistocene fossil sites on Sumatra and Java, Indonesia. Carbon (∂13C) and oxygen (∂18O) isotope analysis of well-preserved herbivore teeth enamel reveals a marked contrast between C3-dominated diets in warmer periods, and C4-dominated diets in cooler periods, reflecting the distinct changes in Sundaland vegetation cover between glacials and interglacials. These isotope patterns allow us to assign the appropriate climatic background to some of the older fossil assemblages from Java, for which dating uncertainty does not allow direct assignment to glacial or interglacial conditions. The stable isotope signatures of herbivores from Trinil and Sangiran, sites well-known for the fossil occurrence of Homo erectus, indicate glacial conditions. The isotope data of several H. erectus fossils from these sites seem to be in line with such an interpretation. Furthermore, we applied strontium (87Sr/86Sr) isotope analyses to a sample subset. The preliminary data show distinct Sr-isotope ratios for different sites, providing clues for the applicability of this isotope technique in detecting climate-related mobility of Sundaland fossil faunas.

  4. Single-cell transcriptomic reconstruction reveals cell cycle and multi-lineage differentiation defects in Bcl11a-deficient hematopoietic stem cells.

    Science.gov (United States)

    Tsang, Jason C H; Yu, Yong; Burke, Shannon; Buettner, Florian; Wang, Cui; Kolodziejczyk, Aleksandra A; Teichmann, Sarah A; Lu, Liming; Liu, Pentao

    2015-09-21

    Hematopoietic stem cells (HSCs) are a rare cell type with the ability of long-term self-renewal and multipotency to reconstitute all blood lineages. HSCs are typically purified from the bone marrow using cell surface markers. Recent studies have identified significant cellular heterogeneities in the HSC compartment with subsets of HSCs displaying lineage bias. We previously discovered that the transcription factor Bcl11a has critical functions in the lymphoid development of the HSC compartment. In this report, we employ single-cell transcriptomic analysis to dissect the molecular heterogeneities in HSCs. We profile the transcriptomes of 180 highly purified HSCs (Bcl11a (+/+) and Bcl11a (-/-)). Detailed analysis of the RNA-seq data identifies cell cycle activity as the major source of transcriptomic variation in the HSC compartment, which allows reconstruction of HSC cell cycle progression in silico. Single-cell RNA-seq profiling of Bcl11a (-/-) HSCs reveals abnormal proliferative phenotypes. Analysis of lineage gene expression suggests that the Bcl11a (-/-) HSCs are constituted of two distinct myeloerythroid-restricted subpopulations. Remarkably, similar myeloid-restricted cells could also be detected in the wild-type HSC compartment, suggesting selective elimination of lymphoid-competent HSCs after Bcl11a deletion. These defects are experimentally validated in serial transplantation experiments where Bcl11a (-/-) HSCs are myeloerythroid-restricted and defective in self-renewal. Our study demonstrates the power of single-cell transcriptomics in dissecting cellular process and lineage heterogeneities in stem cell compartments, and further reveals the molecular and cellular defects in the Bcl11a-deficient HSC compartment.

  5. Paleoenvironmental and paleoclimatic investigations on Isla de los Estados, Argentina

    Science.gov (United States)

    Björck, S.; Fernandez, M.; Hjort, C.; Ljung, K.; Martinez, O.; Möller, P.; Ponce, F.; Rabassa, J.; Roig, F.; Unkel, I.; Wohlfarth, B.

    2007-05-01

    The expedition in November-December 2005 to Isla de los Estados (Staten Island) off the southeastern tip of South America was a cooperative venture between Lund University (LU) and Stockholm University (SU) in Sweden and the CADIC-CONICET Institute in Ushuaia, Argentina. The aim of the expedition was threefold: (1) to extend the Swedish paleoclimatic "ATLANTIS"-project (Greenland, Iceland, Faroe Islands, Azores, Grenada, Tristan da Cunha; PI S Björck) to the southern part of the South American continent, (2) to connect earlier glacial and climate history reconstructions from the Antarctic Peninsula to equivalents north of the Drake Passage in southernmost South America, and (3) to complement paleo-information available from the Tierra del Fuego mainland with information from Isla de los Estados. Focus was on two areas in the northern and north-western part of the island, Bahía Colnett and Bahia Crossley. Detailed geomorphologic and stratigraphic mapping of glacial deposits were combined with sampling sediments for OSL dating. To reconstruct the paleoclimatic development of Isla de los Estados since the last ice retreat, four main peat bog/lake sites were cored and sampled. In addition, living trees of Nothofagus and old logs preserved in the peat were sampled for dendrochronological and dendroclimatological studies. Preliminary results show that the deglaciation of the study area occurred before 16500 cal yr BP. Detailed multi- proxy analyses of the four sequences are under way and first results will be presented.

  6. Reconstruction and analysis of the lncRNA-miRNA-mRNA network based on competitive endogenous RNA reveal functional lncRNAs in rheumatoid arthritis.

    Science.gov (United States)

    Jiang, Hui; Ma, Rong; Zou, Shubiao; Wang, Yongzhong; Li, Zhuqing; Li, Weiping

    2017-06-01

    Rheumatoid arthritis (RA) is an autoimmune disease with an unknown etiology, occurring in approximately 1.0% of general population. More and more studies have suggested that long non-coding RNAs (lncRNAs) could play important roles in various biological processes and be associated with the pathogenesis of different kinds of diseases including RA. Although a large number of lncRNAs have been found, our knowledge of their function and physiological/pathological significance is still in its infancy. In order to reveal functional lncRNAs and identify the key lncRNAs in RA, we reconstructed a global triple network based on the competitive endogenous RNA (ceRNA) theory using the data from National Center for Biotechnology Information Gene Expression Omnibus and our previous paper. Meanwhile, Gene Ontology (GO) and pathway analysis were performed using Cytoscape plug-in BinGO and Database for Annotation, Visualization, and Integration Discovery (DAVID), respectively. We found that the lncRNA-miRNA-mRNA network was composed of 7 lncRNA nodes, 90 mRNA nodes, 24 miRNA nodes, and 301 edges. The functional assay showed that 147 GO terms and 23 pathways were enriched. In addition, three lncRNAs (S5645.1, XR_006437.1, J01878) were highly related to RA, and therefore, were selected as key lncRNAs. This study suggests that specific lncRNAs are associated with the development of RA, and three lncRNAs (S5645.1, XR_006437.1, J01878) could be used as potential diagnostic biomarkers and therapeutic targets.

  7. A systematic review of functional outcome and quality of life following reconstruction of maxillofacial defects using vascularized free fibula flaps and dental rehabilitation reveals poor data quality

    NARCIS (Netherlands)

    Wijbenga, Johan G.; Schepers, Rutger H.; Werker, Paul M. N.; Witjes, Max J. H.; Dijkstra, Pieter U.

    Background: Reconstruction and oral rehabilitation of segmental maxillofacial defects resulting from ablative surgery is commonly achieved by osteocutaneous vascularized free fibula (VFFF) transplantation combined with implant-supported dental prostheses. We systematically reviewed the literature

  8. Revised paleoenvironmental analysis of the Holocene portion of the Barbados sea-level record: Cobbler's Reef revisited

    Science.gov (United States)

    Toscano, Marguerite A.

    2016-06-01

    Sample elevations corrected for tectonic uplift and assessed relative to local modeled sea levels provide a new perspective on paleoenvironmental history at Cobbler's Reef, Barbados. Previously, 14C-dated surface samples of fragmented Acropora palmata plotted above paleo sea level based on their present (uplifted) elevations, suggesting supratidal rubble deposited during a period of extreme storms (4500-3000 cal BP), precipitating reef demise. At several sites, however, A. palmata persisted, existing until ~370 cal BP. Uplift-corrected A. palmata sample elevations lie below the western Atlantic sea-level curve, and ~2 m below ICE-6G-modeled paleo sea level, under slow rates of sea-level rise, negating the possibility that Cobbler's Reef is a supratidal storm ridge. Most sites show limited age ranges from corals likely damaged/killed on the reef crest, not the mixed ages of rubble ridges, strongly suggesting the reef framework died off in stages over 6500 yr. Reef crest death assemblages invoke multiple paleohistoric causes, from ubiquitous hurricanes to anthropogenic impacts. Comparison of death assemblage ages to dated regional paleotempestological sequences, proxy-based paleotemperatures, recorded hurricanes, tsunamis, European settlement, deforestation, and resulting turbidity, reveals many possible factors inimical to the survival of A. palmata along Cobbler's Reef.

  9. BRACKISH MARSH BENTHIC MICROFAUNA AND PALEOENVIRONMENTAL CHANGES DURING THE LAST 6000 YEARS AT THE COASTAL PLAIN OF MARATHON (SE GREECE

    Directory of Open Access Journals (Sweden)

    MARIA V.TRIANTAPHYLLOU

    2003-11-01

    Full Text Available The present study, based mainly on the analysis of foraminifers and ostracodes, provides evidence of paleoenvironmental changes on the coastal plain of Marathon (E. Greece during the last 6.000 yrs. Three sedimentary units -lagoonal formations - were recognized and identified as A, B and C. They range in time between before 5500BP-3500BP, 3500BP-2500BP and 2500BP-recent, respectively. The study of the brackish marsh microfauna of the Marathon plain Holocene sediments reveals the presence, during the last 5500 yrs., of three distinct biofacies in the sedimentary units already established. Alternating mesohaline - oligohaline (MO, oligohaline - fresh water (OFW and mesohaline - oligohaline to oligohaline - fresh water (MO-OFW biofacies in the framework of the sedimentary units indicate a general trend landward along the plain suggesting a slowing of sea-level rise probably correlated with a relevant tectonic uplift. One prominent feature of this study is the clarification of the ecological preference of the species Trichohya1us aguayoi (Bermudez, 1935, which is dominant in oligohaline conditions under an influence of fresh water input (salinity less than 15 ‰. 

  10. Late Quaternary paleoenvironmental records from the Chatanika River valley near Fairbanks (Alaska)

    Science.gov (United States)

    Schirrmeister, Lutz; Meyer, Hanno; Andreev, Andrei; Wetterich, Sebastian; Kienast, Frank; Bobrov, Anatoly; Fuchs, Margret; Sierralta, Melanie; Herzschuh, Ulrike

    2016-09-01

    Perennially-frozen deposits are considered as excellent paleoenvironmental archives similar to lacustrine, deep marine, and glacier records because of the long-term and good preservation of fossil records under stable permafrost conditions. A permafrost tunnel in the Vault Creek Valley (Chatanika River Valley, near Fairbanks) exposes a sequence of frozen deposits and ground ice that provides a comprehensive set of proxies to reconstruct the late Quaternary environmental history of Interior Alaska. The multi-proxy approach includes different dating techniques (radiocarbon-accelerator mass spectrometry [AMS 14C], optically stimulated luminescence [OSL], thorium/uranium radioisotope disequilibria [230Th/U]), as well as methods of sedimentology, paleoecology, hydrochemistry, and stable isotope geochemistry of ground ice. The studied sequence consists of 36-m-thick late Quaternary deposits above schistose bedrock. Main portions of the sequence accumulated during the early and middle Wisconsin periods. The lowermost unit A consists of about 9-m-thick ice-bonded fluvial gravels with sand and peat lenses. A late Sangamon (MIS 5a) age of unit A is assumed. Spruce forest with birch, larch, and some shrubby alder dominated the vegetation. High presence of Sphagnum spores and Cyperaceae pollen points to mires in the Vault Creek Valley. The overlying unit B consists of 10-m-thick alternating fluvial gravels, loess-like silt, and sand layers, penetrated by small ice wedges. OSL dates support a stadial early Wisconsin (MIS 4) age of unit B. Pollen and plant macrofossil data point to spruce forests with some birch interspersed with wetlands around the site. The following unit C is composed of 15-m-thick ice-rich loess-like and organic-rich silt with fossil bones and large ice wedges. Unit C formed during the interstadial mid-Wisconsin (MIS 3) and stadial late Wisconsin (MIS 2) as indicated by radiocarbon ages. Post-depositional slope processes significantly deformed both, ground

  11. Paleoenvironmental Implications of Clay Minerals at Yellowknife Bay, Gale Crater, Mars

    Science.gov (United States)

    Bristow, Thomas F.; Blake, David F.

    2014-01-01

    The Mars Science Laboratory (MSL) Rover, Curiosity spent approx 150 sols at Yellowknife Bay (YKB) studying a section of fluvio-lacustrine sedimentary rocks (with potential indications of volcanic influence), informally known as the Yellowknife Bay formation. YKB lies in a distal region of the Peace Vallis alluvial fan, which extends from the northern rim of Gale Crater toward the dune field at the base of Mt Sharp. Sedimentological and stratigraphic observations are consistent with the Yellowknife Bay formation being part of a distal fan deposit, which could be as young as middle Hesperian to even early Amazonian in age (approx. 3.5 to 2.5 Ga). The Yellowknife Bay formation hosts a unit of mudstone called the Sheepbed member. Curiosity obtained powdered rock samples from two drill holes in the Sheepbed Member, named John Klein and Cumberland, and delivered them to instruments in Curiosity. Data from CheMin, a combined X-ray diffraction (XRD)/X-ray fluorescence instrument (XRF), has allowed detailed mineralogical analysis of mudstone powders revealing a clay mineral component of approx. 20 wt.% in each sample. The clay minerals are important indicators of paleoenvironmental conditions and sensitive recorders of post-depositional alteration processes. The XRD pattern of John Klein reveals a 02l band consistent with a trioctahedral phyllosilicate. A broad peak at approx. 10A with a slight inflexion at approx. 12A indicates the presence of 2:1 type clay minerals in the John Klein sample. The trioctahedral nature of the clay minerals, breadth of the basal reflection, and presence of a minor component with larger basal spacing suggests that John Klein contains a trioctahedral smectite (probably saponite), whose interlayer is largely collapsed because of the low-humidity conditions. The XRD patterns show no evidence of corrensite (mixed-layer chlorite/smectite) or chlorite, which are typical diagenetic products of trioctahedral smectites when subjected to burial and

  12. Use-inspired Paleoenvironmental Science and Data: A Deep Whole-Earth Time Dimension

    Science.gov (United States)

    Overpeck, J. T.

    2016-12-01

    The field of paleoenvironmental science has matured dramatically over the last 30 years, and paleo-data are now widely used to inform policy and other decision-making. The IPCC now incorporates paleo-perspectives in a prominent manner - centuries to millennia-long paleo records are key to assessing the full range of possible climate system behavior, how the Earth's climate system responds to large changes in forcing, how climate change may impact ecological, hydrological, oceanographic and many other systems that humans are concerned about. Paleohydroclimatic data increasingly are used by water managers, just as forest managers use paleo-fire data to understand the natural rhythms and processes so critical to healthy ecosystems and the services they provide. Paleo-data are now widely used for model evaluation, and for understanding what models may be missing - in this sense, the millennia-long observational record provided by paleoenvironmental data helps us avoid costly surprises. Success comes with responsibility, however. The more paleo-data and paleo-based understanding informs policy and other decisions, the more critical it is that paleo-data and the results built on them need to be openly shared, easily accessible and reproducible. The value of paleo-data grows with use, and thus data sharing serves to grow value to the society that ultimately pays for the research. The tradition of sharing paleo-data is built on an even longer tradition of sharing samples, and yet innovations are still needed to make sure samples are managed for future use, particularly as natural archives like glaciers, caves and corals are lost to climate change and other human activity. Scientific journals and data centers are constantly innovating; paleoenvironmental scientists must all play their part as well.

  13. The Yapeyu paleosurface : stratigraphific and paleoenvironmental signified in the evolution of superior cretaceous of Uruguay

    International Nuclear Information System (INIS)

    Pazos, P.; Tofalo, M.; Gonzalez

    1998-01-01

    The named Yapeyu paleosurface placed between Yapeyu and del Palacio Members of the Asencio Formations is anlalyzed in outcrops of the Pedro Chico, Gruta del Palacio and Cca. Arroyo Coquimbo localities. Herrein, its morphologic and paleoenvironmental features are considered to attribute an paleosoil origin for this. This paleosurface is indicative of an important break in the sedimentation and contain several indicators of paleoclimatic tropical and humid conditions. Following allostratigraphic schemes, the paleosurface represent the lower contact of the Asencio Formation constituting a new stratigraphic proposal. Finally, taking into account sedimentalogical features the alluvial origin by the conglomerates of del Palacio Member is rejected. (author)

  14. Preservation of Plant Biomolecules and the Relevance to the Interpretation of Paleoenvironmental Signals: Tertiary Metasequoia Fossils as Examples

    Science.gov (United States)

    Yang, H.; Leng, Q.

    2004-12-01

    The degradation and preservation of biomolecules in plant tissues not only affects the inference on paleoecology of ancient plants but also bears significance in the interpretation of paleoenvironmental signals. Using a combined SEM and geochemical approach, we are able to show the source, liability, and preservation of structural biopolymers from morphologically well-preserved Metasequoia tissues from three Tertiary deposits. We detected a continuum of biomolecular preservation in this evolutionarily-conserved conifer. Pyrolysis-gas chromatography-mass spectrometry (Py-GC-MS) was applied to solvent-extracted residues from both fossil leaf and wood remains in comparison with tissues from their living counterparts. The late Paleocene-early Eocene leaves from Ellesmere Island, Canadian Arctic Archipelago, exhibit the best quality of biochemical preservation and show pyrolysis products derived from labile biomolecules characterized by large amounts of polysaccharides. These labile biomolecules are the oldest record of these kinds so far characterized by the pyrolysis technology. The middle Eocene leaf tissues from Axel Heiberg Island, Canadian Arctic Archipelago, yielded slightly lesser amounts of polysaccharide moieties, but the lignin products are similar to those identified from the Ellesmere Island fossils. Compared with these Arctic materials, the Metasequoia leaves from Miocene Clarkia, Idaho, USA, show the lowest quality of molecular preservation, characterized by a dramatic reduction of polysaccharides. This continuum of relative quality of biomolecular preservation is further confirmed by SEM observations of transverse sections of these fossil leaves. The investigation revealed tissue-specific degradation, and our data support the in-situ polymerization hypothesis for the origin of long-chain homologous pairs of aliphatic n-alk-1-enes/n-alkanes as leaf alteration products. The preferential degradation and selective removal of polysaccharides may be

  15. Greigite formed in early Pleistocene lacustrine sediments from the Heqing Basin, southwest China, and its paleoenvironmental implications

    Science.gov (United States)

    Qiang, Xiaoke; Xu, Xinwen; Zhao, Hui; Fu, Chaofeng

    2018-05-01

    The ferrimagnetic iron sulfide greigite (Fe3S4) occurs widely in sulfidic lacustrine and marine sedimentary environments. Knowledge of its formation and persistence is important for both magnetostratigraphic and paleoenvironmental studies. Although the formation mechanism of greigite has been widely demonstrated, the sedimentary environments associated with greigite formation in lakes, especially on relatively long timescales, are poorly understood. A long and continuous sequence of Pleistocene lacustrine sediments was recovered in the Heqing drill core from southwestern China, which provides an outstanding record of continental climate and environment. Integrated magnetic, geochemical, and paleoclimatic analysis of the lacustrine sequence provides an opportunity to improve our understanding of the environmental controls on greigite formation. Rock magnetic and scanning electron microscope analyses of selected samples from the core reveal that greigite is present in the lower part of the core (part 1, 665.8-372.5 m). Greigite occurs throughout this interval and is the dominant magnetic mineral, irrespective of the climatic state. The magnetic susceptibility (χ) record, which is mainly controlled by the concentration of greigite, matches well with variations in the Indian Summer Monsoon (ISM) index and total organic carbon (TOC) content, with no significant time lag. This indicates that the greigite formed during early diagenesis. In greigite-bearing intervals, with the χ increase, Bc value increase and tends to be stable at about 50 mT. Therefore, we suggest that χ values could estimate the variation of greigite concentration approximately in the Heqing core. Greigite favored more abundant in terrigenous-rich and organic-poor layers associated with weak summer monsoon which are characterized by high χ values, high Fe content, high Rb/Sr ratio and low TOC content. Greigite enhancement can be explained by variations in terrigenous inputs. Our studies demonstrate

  16. Paleoenvironmental interpretation through the analysis of ostracodes and carbonate microfacies: study of the Jandaíra Formation, Upper Cretaceous, Potiguar Basin

    Directory of Open Access Journals (Sweden)

    Marcos Antonio Batista dos Santos Filho

    Full Text Available Paleoecological analyses are important tools for the reconstruction of paleoenvironments. This paper had the objective of using analysis of ostracode assemblages and carbonate microfacies of a well (Carbomil and an outcrop (Quixeré from the Jandaíra Formation, Potiguar Basin, in order to verify how they corroborate and complement the other. Two paleoenvironments for Carbomil Well (assemblages 1 and 2, respectively marine and brackish to neritic environments and one for Quixeré Outcrop (assemblage 3, marine environment were identified through the ostracode assemblage analysis. Thin section analysis allowed the identification of two different facies for Carbomil Well, i.e. bioclastic packstones to wackstones, a marine brackish or restricted marine system; and bioclastic grainstones to packstones, a normal, shallow marine system. High levels of alteration on the samples prevented an adequate analysis of Quixeré Outcrop; however, it seems to point towards a low-energy environment. Overall, information provided by the thin sections corroborate and complement data of the ostracode assemblages, which allowed a higher degree of certainty for the paleoenvironmental analysis.

  17. Pollen-based paleoenvironmental and paleoclimatic change at Lake Ohrid (south-eastern Europe) during the past 500 ka

    NARCIS (Netherlands)

    Sadori, Laura; Koutsodendris, Andreas; Panagiotopoulos, Konstantinos; Masi, Alessia; Bertini, Adele; Combourieu-Nebout, Nathalie; Francke, Alexander; Kouli, Katerina; Joannin, Sébastien; Mercuri, Anna Maria; Peyron, Odile; Torri, Paola; Wagner, Bernd; Zanchetta, Giovanni; Sinopoli, Gaia; Donders, Timme H.

    2016-01-01

    Lake Ohrid is located at the border between FYROM (Former Yugoslavian Republic of Macedonia) and Albania and formed during the latest phases of Alpine orogenesis. It is the deepest, the largest and the oldest tectonic lake in Europe. To better understand the paleoclimatic and paleoenvironmental

  18. A 31,000 year record of paleoenvironmental and lake-level change from Harding Lake, Alaska, USA

    Science.gov (United States)

    Finkenbinder, Matthew S.; Abbott, Mark B.; Edwards, Mary E.; Langdon, Catherine T.; Steinman, Byron A.; Finney, Bruce P.

    2014-03-01

    Physical and geochemical proxy analyses of sediment cores from Harding Lake in central Alaska are used to reconstruct paleoenvironmental change and millennial scale fluctuations in lake level for the last ˜31,000 years. We analyzed a composite 422 cm core from the lake depocenter (42.1 m water depth) and identified 4 distinct lithologic units based on variability in dry bulk density, organic matter, biogenic silica, carbon to nitrogen mass ratios (C/N), organic matter carbon isotopes (δ13C), pollen, and elemental abundances via scanning X-ray fluorescence, with age control provided by 16 Accelerator Mass Spectrometry radiocarbon dates and 210Pb dating. In addition, we analyzed a transect of cores from 7.1 m, 10.75 m, 15.91 m, and 38.05 m water depths to identify lake level fluctuations and to characterize sediment compositional changes as a function of water depth. Organic matter content and magnetic susceptibility values in surface sediments from all transect cores show a strong correlation with water depth. Interpretation of four lithologic units with well-dated contacts produced a record of water-depth variations that is consistent with independent climate records from eastern Beringia. Basal coarse-grained sediments (quartz pebble diamicton) were deposited prior to 30,700 calendar years before present (yr BP), possibly from fluvial reworking or deflation during a period of severe aridity. Unit 1 sediments were deposited between 30,700 and 15,700 yr BP and are characterized by a low organic matter content, a high magnetic susceptibility, and low biogenic silica concentrations resulting from very low lake levels, low terrestrial and in-lake productivity and a high flux of clastic sediment. An abrupt increase in organic matter and biogenic silica concentration marks the transition into Unit 2 sediments, which were deposited between 15,700 and 9,400 yr BP when lake levels were higher and variable (relative to Unit 1). The transition to full interglacial

  19. Three-dimensional reconstructions of the bacteriophage CUS-3 virion reveal a conserved coat protein I-domain but a distinct tailspike receptor-binding domain

    International Nuclear Information System (INIS)

    Parent, Kristin N.; Tang, Jinghua; Cardone, Giovanni; Gilcrease, Eddie B.; Janssen, Mandy E.; Olson, Norman H.; Casjens, Sherwood R.; Baker, Timothy S.

    2014-01-01

    CUS-3 is a short-tailed, dsDNA bacteriophage that infects serotype K1 Escherichia coli. We report icosahedrally averaged and asymmetric, three-dimensional, cryo-electron microscopic reconstructions of the CUS-3 virion. Its coat protein structure adopts the “HK97-fold” shared by other tailed phages and is quite similar to that in phages P22 and Sf6 despite only weak amino acid sequence similarity. In addition, these coat proteins share a unique extra external domain (“I-domain”), suggesting that the group of P22-like phages has evolved over a very long time period without acquiring a new coat protein gene from another phage group. On the other hand, the morphology of the CUS-3 tailspike differs significantly from that of P22 or Sf6, but is similar to the tailspike of phage K1F, a member of the extremely distantly related T7 group of phages. We conclude that CUS-3 obtained its tailspike gene from a distantly related phage quite recently. - Highlights: • Asymmetric and symmetric three-dimensional reconstructions of phage CUS-3 are presented. • CUS-3 major capsid protein has a conserved I-domain, which is found in all three categories of “P22-like phage”. • CUS-3 has very different tailspike receptor binding domain from those of P22 and Sf6. • The CUS-3 tailspike likely was acquired by horizontal gene transfer

  20. Lake sediment-based Late Holocene glacier reconstruction reveals medieval retreat and two-phase Little Ice Age on subantarctic South Georgia

    Science.gov (United States)

    van der Bilt, W. G. M.; Bakke, J.; Werner, J.; Paasche, O.; Rosqvist, G. N.; Vatle, S. S.

    2016-12-01

    Southern Ocean climate is rapidly changing. Yet beyond the instrumental period (± 100 years), our comprehension of climate variability in the region is restricted by a lack of high-resolution paleoclimate records. Alpine glaciers, ubiquitous on Southern Ocean islands, may provide such data as they rapidly respond to climate shifts, recording attendant changes in extent by variations in glacial erosion. Rock flour, the fine-grained fraction of this process, is suspended in meltwater streams and transfers this signal to the sediments of downstream lakes, continuously recording glacier history. Here, we use this relationship and present the first reconstruction of the Late Holocene (1250 cal. yr BP - present) glacier history of the Southern Ocean island of South Georgia, using sediments from the glacier-fed Middle Hamberg lake. Variations are resolved on multi-centennial scales due to robust chronological control. To fingerprint a glacial erosion signal, we employed a set of routinely used physical, geochemical and magnetic parameters. Using Titanium counts, validated against changes in sediment density and grain size distribution, we continuously reconstruct glacier variations over the past millennium. Refining local moraine evidence and supporting evidence from other Southern Hemisphere sites, this study shows a progressive diminishing of consecutive Late Holocene advances. These include a two-stage Little Ice Age, in agreement with other Southern Hemisphere glacier evidence. The presented record furthermore captures an unreported retreat phase behind present limits around 500 cal. yr BP.

  1. Three-dimensional reconstructions of the bacteriophage CUS-3 virion reveal a conserved coat protein I-domain but a distinct tailspike receptor-binding domain

    Energy Technology Data Exchange (ETDEWEB)

    Parent, Kristin N., E-mail: kparent@msu.edu [Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093-0378 (United States); Tang, Jinghua; Cardone, Giovanni [Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093-0378 (United States); Gilcrease, Eddie B. [University of Utah School of Medicine, Division of Microbiology and Immunology, Department of Pathology, Salt Lake City, UT 84112 (United States); Janssen, Mandy E.; Olson, Norman H. [Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093-0378 (United States); Casjens, Sherwood R., E-mail: sherwood.casjens@path.utah.edu [University of Utah School of Medicine, Division of Microbiology and Immunology, Department of Pathology, Salt Lake City, UT 84112 (United States); Baker, Timothy S., E-mail: tsb@ucsd.edu [Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093-0378 (United States); University of California, San Diego, Division of Biological Sciences, La Jolla, CA, 92093 (United States)

    2014-09-15

    CUS-3 is a short-tailed, dsDNA bacteriophage that infects serotype K1 Escherichia coli. We report icosahedrally averaged and asymmetric, three-dimensional, cryo-electron microscopic reconstructions of the CUS-3 virion. Its coat protein structure adopts the “HK97-fold” shared by other tailed phages and is quite similar to that in phages P22 and Sf6 despite only weak amino acid sequence similarity. In addition, these coat proteins share a unique extra external domain (“I-domain”), suggesting that the group of P22-like phages has evolved over a very long time period without acquiring a new coat protein gene from another phage group. On the other hand, the morphology of the CUS-3 tailspike differs significantly from that of P22 or Sf6, but is similar to the tailspike of phage K1F, a member of the extremely distantly related T7 group of phages. We conclude that CUS-3 obtained its tailspike gene from a distantly related phage quite recently. - Highlights: • Asymmetric and symmetric three-dimensional reconstructions of phage CUS-3 are presented. • CUS-3 major capsid protein has a conserved I-domain, which is found in all three categories of “P22-like phage”. • CUS-3 has very different tailspike receptor binding domain from those of P22 and Sf6. • The CUS-3 tailspike likely was acquired by horizontal gene transfer.

  2. A genome-wide phylogenetic reconstruction of family 1 UDP-glycosyltransferases revealed the expansion of the family during the adaptation of plants to life on land.

    Science.gov (United States)

    Caputi, Lorenzo; Malnoy, Mickael; Goremykin, Vadim; Nikiforova, Svetlana; Martens, Stefan

    2012-03-01

    For almost a decade, our knowledge on the organisation of the family 1 UDP-glycosyltransferases (UGTs) has been limited to the model plant A. thaliana. The availability of other plant genomes represents an opportunity to obtain a broader view of the family in terms of evolution and organisation. Family 1 UGTs are known to glycosylate several classes of plant secondary metabolites. A phylogeny reconstruction study was performed to get an insight into the evolution of this multigene family during the adaptation of plants to life on land. The organisation of the UGTs in the different organisms was also investigated. More than 1500 putative UGTs were identified in 12 fully sequenced and assembled plant genomes based on the highly conserved PSPG motif. Analyses by maximum likelihood (ML) method were performed to reconstruct the phylogenetic relationships existing between the sequences. The results of this study clearly show that the UGT family expanded during the transition from algae to vascular plants and that in higher plants the clustering of UGTs into phylogenetic groups appears to be conserved, although gene loss and gene gain events seem to have occurred in certain lineages. Interestingly, two new phylogenetic groups, named O and P, that are not present in A. thaliana were discovered. © 2011 The Authors. The Plant Journal © 2011 Blackwell Publishing Ltd.

  3. Chemical and valence reconstruction at the surface of SmB6 revealed by means of resonant soft x-ray reflectometry

    Science.gov (United States)

    Zabolotnyy, V. B.; Fürsich, K.; Green, R. J.; Lutz, P.; Treiber, K.; Min, Chul-Hee; Dukhnenko, A. V.; Shitsevalova, N. Y.; Filipov, V. B.; Kang, B. Y.; Cho, B. K.; Sutarto, R.; He, Feizhou; Reinert, F.; Inosov, D. S.; Hinkov, V.

    2018-05-01

    Samarium hexaboride (SmB6), a Kondo insulator with mixed valence, has recently attracted much attention as a possible host for correlated topological surface states. Here, we use a combination of x-ray absorption and reflectometry techniques, backed up with a theoretical model for the resonant M4 ,5 absorption edge of Sm and photoemission data, to establish laterally averaged chemical and valence depth profiles at the surface of SmB6. We show that upon cleaving, the highly polar (001) surface of SmB6 undergoes substantial chemical and valence reconstruction, resulting in boron termination and a Sm3 + dominated subsurface region. Whereas at room temperature, the reconstruction occurs on a timescale of less than 2 h, it takes about 24 h below 50 K. The boron termination is eventually established, irrespective of the initial termination. Our findings reconcile earlier depth resolved photoemission and scanning tunneling spectroscopy studies performed at different temperatures and are important for better control of surface states in this system.

  4. Middle Miocene paleoenvironmental crises in Central Eurasia caused by changes in marine gateway configuration

    Science.gov (United States)

    Palcu, D. V.; Golovina, L. A.; Vernyhorova, Y. V.; Popov, S. V.; Krijgsman, W.

    2017-11-01

    Marine gateways prove to be important factors for changes in the ecology and biochemistry of marginal seas. Changes in gateway configuration played a dominant role in the Middle Miocene paleogeographic evolution of the Paratethys Sea that covered Central Eurasia. Here, we focus on the connection between the Central (CP) and Eastern Paratethys (EP) to understand the paleoenvironmental changes caused by the evolution of this marine gateway. We first construct an integrated magneto-biostratigraphic framework for the late Langhian-Serravallian (Chokrakian-Karaganian-Konkian-Volhynian) sedimentary record of the eastern domain, which allows a correlation to the well-dated successions west of the gateway. The magneto-biostratigraphic results from the Zelensky-Panagia section on the Black Sea coast of Russia show that the Chokrakian/Karaganian boundary has an age of 13.8 Ma, the Karaganian/Konkian boundary is dated at 13.4 Ma, and the Konkian/Volhynian boundary at 12.65 Ma. We identify three major phases on gateway functioning that are reflected in specific environmental changes. During the Karaganian, the EP turned into a lake-sea that supplied a unidirectional flow of low-salinity waters to the west, where the CP sea experienced its Badenian Salinity Crisis. This configuration is remarkably similar to the Mediterranean during its Messinian Salinity Crisis. The second phase is marked by a marine transgression from the west, reinstalling open-marine conditions in the CP and causing marine incursions in the EP during the Konkian. The Volhynian is characterized by a new gateway configuration that allows exchange between CP and EP, creating unified conditions all over the Paratethys. We hypothesize that a density driven pumping mechanism is triggered by the increase in connectivity at the Konkian/Volhynian boundary, which simultaneously caused major paleoenvironmental changes at both sides of the gateway and led to the Badenian-Sarmatian extinction event in the CP.

  5. Multi-proxy paleoenvironmental reconstruction of saline lake carbonates: Paleoclimatic and paleogeographic implications (Priabonian-Rupelian, Issirac Basin, SE France)

    Science.gov (United States)

    Lettéron, Alexandre; Fournier, François; Hamon, Youri; Villier, Loïc; Margerel, Jean-Pierre; Bouche, Alexandre; Feist, Monique; Joseph, Philippe

    2017-08-01

    A 200-m thick carbonate succession has been deposited in shallow-water, saline lake environments during the Priabonian-Rupelian in the Issirac Basin (South-East France). The palaeoenvironmental and palaeogeographic significance of such saline lake carbonates has been characterized on the basis of a multi-proxy analysis including 1) depositional and diagenetic features, 2) biological components (molluscs, ostracods, benthic foraminifers, characean) and 3) carbon, oxygen and strontium stable isotopes. Biological associations are indicative of dominantly shallow (climate (dry versus humid) are the three key factors controlling the water composition, carbonate production and depositional environments in the Issirac lake. Although the ASCI (Alès-Issirac-Saint-Chaptes) lacustrine system likely represents an athalassic (inland) lake system evolving through times, the stable isotope composition (C, O and Sr) of carbonates strongly suggests the occurrence of transient connections of the ASCI lake water with water bodies influenced by seawater and/or fed with sulfates deriving from Triassic evaporites. The Issirac Basin may be therefore interpreted as a sill area connecting the ASCI lacustrine system with the Rhône valley (Mormoiron and Valence) saline lake systems during maximum flooding periods. Finally, changes in depositional features, biota and stable isotope composition of carbonates in unit U3 suggest a transition from relatively dry to more humid climate during the uppermost Priabonian or earliest Rupelian.

  6. The significance of marine microfossils for paleoenvironmental reconstruction of the Solimões Formation (Miocene), western Amazonia, Brazil

    Science.gov (United States)

    Linhares, Ana Paula; Gaia, Valber do Carmo de Souza; Ramos, Maria Inês Feijó

    2017-11-01

    Micropalaeontological studies of borehole cores 1AS-7D-AM and 1AS-8-AM, from Atalaia do Norte, Amazonas state, Brazil, support previous evidence for Miocene marine ingressions in Western Amazonia. Three marine incursion events are recorded: the first in the Early/early Middle Miocene (in both cores), the second in the late Middle/early Late Miocene (1AS-8-AM), and the third in the Late Miocene (1AS-7D-AM). The first event is characterized by exclusively mangrove taxa, and the last two present a mixture of marine, fresh, and brackish water taxa. However, at the end of the third event an increase of fluvial influence is demonstrated by the predominance of freshwater taxa. These marine incursions reached the study area through narrow and geographically limited connections, controlled by the tectonic setting, at a time between the Early/early Middle Miocene and late Middle/Late Miocene. Thereafter, fluvial conditions were reestablished before Pliocene times.

  7. Integrated stratigraphy and paleoenvironmental reconstruction for the Late Cretaceous Danish chalk based on the Stevns-2 core

    DEFF Research Database (Denmark)

    Boussaha, Myriam; Thibault, Nicolas Rudolph; Stemmerik, Lars

    An integrated stratigraphy of the Stevns-2 core located in eastern Denmark is hereby presented based on calcareous nannofossil biostratigraphy and carbon isotope stratigraphy. Carbon and oxygen isotope have been performed on 419 bulk samples. Calcareous nannofossil biostratigraphy has been applied...

  8. Ecomorphological analysis of bovid mandibles from Laetoli Tanzania using 3D geometric morphometrics: Implications for hominin paleoenvironmental reconstruction.

    Science.gov (United States)

    Forrest, Frances L; Plummer, Thomas W; Raaum, Ryan L

    2018-01-01

    The current study describes a new method of mandibular ecological morphology (ecomorphology). Three-dimensional geometric morphometrics (3D GM) was used to quantify mandibular shape variation between extant bovids with different feeding preferences. Landmark data were subjected to generalized Procrustes analysis (GPA), principal components analysis (PCA), and discriminant function analysis (DFA). The PCA resulted in a continuum from grazers to browsers along PC1 and DFA classified 88% or more of the modern specimens to the correct feeding category. The protocol was reduced to a subset of landmarks on the mandibular corpus in order to make it applicable to incomplete fossils. The reduced landmark set resulted in greater overlap between feeding categories but maintained the same continuum as the complete landmark model. The DFA resubstitution and jackknife analyses resulted in classification success rates of 85% and 80%, respectively. The reduced landmark model was applied to fossil mandibles from the Upper Laetolil Beds (∼4.3-3.5 Ma) and Upper Ndolanya Beds (∼2.7-2.6 Ma) at Laetoli, Tanzania in order to assess antelope diet, and indirectly evaluate paleo-vegetation structure. The majority of the fossils were classified by the DFA as browsers or mixed feeders preferring browse. Our results indicate a continuous presence of wooded habitats and are congruent with recent environmental studies at Laetoli indicating a mosaic woodland-bushland-grassland savanna ecosystem. Copyright © 2017 Elsevier Ltd. All rights reserved.

  9. Integrated Paleoenvironmental Reconstruction and Taphonomy of a Unique Upper Cretaceous Vertebrate-Bearing Locality (Velaux, Southeastern France.

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    Aude Cincotta

    Full Text Available The Velaux-La Bastide Neuve fossil-bearing site (Bouches-du-Rhône, France has yielded a diverse vertebrate assemblage dominated by dinosaurs, including the titanosaur Atsinganosaurus velauciensis. We here provide a complete inventory of vertebrate fossils collected during two large-scale field campaigns. Numerous crocodilian teeth occur together with complete skulls. Pterosaur, hybodont shark and fish elements are also represented but uncommon. Magnetostratigraphic analyses associated with biostratigraphic data from dinosaur eggshell and charophytes suggest a Late Campanian age for the locality. Lithologic and taphonomic studies, associated with microfacies and palynofacies analyses, indicate a fluvial setting of moderate energy with broad floodplain. Palynomorphs are quite rare; only three taxa of pollen grains occur: a bisaccate taxon, a second form probably belonging to the Normapolles complex, and another tricolporate taxon. Despite the good state of preservation, these taxa are generally difficult to identify, since they are scarce and have a very minute size. Most of the vertebrate remains are well preserved and suggest transport of the carcasses over short distances before accumulation in channel and overbank facies, together with reworked Aptian grains of glauconite, followed by a rapid burial. The bones accumulated in three thin layers that differ by their depositional modes and their taphonomic histories. Numerous calcareous and iron oxides-rich paleosols developed on the floodplain, suggesting an alternating dry and humid climate in the region during the Late Campanian.

  10. UPPER PLEISTOCENE SMALL MAMMAL FAUNA FROM SALNOVA QUARRY (SALTRIO-VARESE-NORTHWESTERN LOMBARDY: PALEOENVIRONMENTAL RECONSTRUCTION AND CHIONOMYS NIVALIS POPULATION STUDY

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    FABIO BONA

    2011-07-01

    Full Text Available The small mammals collection described in the present paper has been collected during three field small excavation at the Upper Pleistocene site of Cava Salnova (Saltrio - VA -. The collection consists of 501 determined remains of small mammals coming from all 17 stratigraphical levels and belonging at least to 26 species. Two 14C datings (AMS has been made on small mammals bones belonging to the lev. 1b: 1- 34315 ± 200 yr BP; 2- 35101± 250 yr BP. The interpretation of faunal data enables us to propose the following palaeoenvironmental framework: lower levels, lev. b and liv. c, are characterized by a cool weather with a high degree of plant cover. The deposition of lev. e to the lev. g coincided with an important reforestation occurred at the same time of the hottest Wurmian interpleniglacial. In lev. m, n, o, the snow vole, although rare, reappears. This may indicate the beginning of the climatic cooling, which is the prelude to the Last Glacial Maximum. 

  11. Monitoring tectonic uplift and paleo-environmental reconstruction for marine terraces near Magaracik and Samandag, Hatay Province, Turkey

    International Nuclear Information System (INIS)

    Florentin, Jonathan A.; Blackwell, Bonnie A.B.; Blickstein, Joel I.B.; Skinner, Anne R.; Tueysuez, Okan; Tari, Ufuk; Can Genc, S.; Imren, Caner; Mo, Shirley; Huang, Yiwen E.W.; Kim, Maria

    2014-01-01

    Near Hatay, the Antakya-Samandag-Cyprus Fault (ASCF), East Anatolian and Dead Sea Fault Zones, the large faults that form the edges of the African, Anatolian, Cyprus and Arabian Plates, all produce large earthquakes, which have decimated Hatay repeatedly. Near Samandag, Hatay, differential vertical displacement on the ASCF has uplifted the southeastern side relative to northwestern side, producing large fault scarps that parallel the Asi (Orontes) River. Tectonic uplift coupled with Quaternary sea level fluctuations has produced several stacked marine terraces stranded above current sea level. This study dated 24 mollusc samples from 10 outcrops on six marine terraces near Samandag electron spin resonance (ESR). Ages were calculated using time-averaged and volumetrically averaged external dose rates, modelled by assuming typical water depths for the individual species and sediment thicknesses estimated from geological criteria. Uplift rates were then calculated for each fault block. At all the Magaracik terraces, the dates suggest that many shells were likely reworked. On the 30 m terrace at Magaracik IV (UTM 766588-3999880), Lithophagus burrows with in situ shells cross the unconformity. One such shell dated to 62 ± 6 ka, setting the minimum possible age for the terrace. For all the Magaracik terraces at ∼30 m above mean sea level (amsl), the youngest ages for the reworked shells, which averaged 60 ± 3 ka for six separate analyses, sets the maximum possible age for this unit. Thus, the terrace must date to 60-62 ± 3 ka, at the MIS 3/4 boundary when temperatures and sea levels were fluctuating rapidly. Older units dating to MIS 7, 6, and 5 likely were being eroded to supply some fossils found in this terrace. At Magaracik Dump (UTM 765391-4001048), ∼103 m amsl, Ostrea and other shells were found cemented in growth position to the limestone boulders outcropping there -1 , since MIS 5c. At Samandag Kurt Stream at 38 m amsl, molluscs were deposited fine sandy gravel, which was likely formed in a large tidal channel. Four molluscs averaged 116 ± 5 ka. If these molluscs have not been reworked, this fault block has uplifted at 0.34 ± 0.05 m ky -1 since the MIS 5d/5e boundary. The differences in these uplift rates suggests that at least one, and possibly two, hitherto undiscovered faults may separate the Magaracik Dump site from the other Magaracik sites and from the Samandag Kurt Stream site. (authors)

  12. Medio-Frontal and Anterior Temporal abnormalities in children with attention deficit hyperactivity disorder (ADHD during an acoustic antisaccade task as revealed by electro-cortical source reconstruction

    Directory of Open Access Journals (Sweden)

    Rockstroh Brigitte

    2011-01-01

    Full Text Available Abstract Background Attention Deficit Hyperactivity Disorder (ADHD is one of the most prevalent disorders in children and adolescence. Impulsivity is one of three core symptoms and likely associated with inhibition difficulties. To date the neural correlate of the antisaccade task, a test of response inhibition, has not been studied in children with (or without ADHD. Methods Antisaccade responses to visual and acoustic cues were examined in nine unmedicated boys with ADHD (mean age 122.44 ± 20.81 months and 14 healthy control children (mean age 115.64 ± 22.87 months, three girls while an electroencephalogram (EEG was recorded. Brain activity before saccade onset was reconstructed using a 23-source-montage. Results When cues were acoustic, children with ADHD had a higher source activity than control children in Medio-Frontal Cortex (MFC between -230 and -120 ms and in the left-hemispheric Temporal Anterior Cortex (TAC between -112 and 0 ms before saccade onset, despite both groups performing similarly behaviourally (antisaccades errors and saccade latency. When visual cues were used EEG-activity preceding antisaccades did not differ between groups. Conclusion Children with ADHD exhibit altered functioning of the TAC and MFC during an antisaccade task elicited by acoustic cues. Children with ADHD need more source activation to reach the same behavioural level as control children.

  13. Comparative genomic analysis of the arthropod muscle myosin heavy chain genes allows ancestral gene reconstruction and reveals a new type of 'partially' processed pseudogene

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    Kollmar Martin

    2008-02-01

    Full Text Available Abstract Background Alternative splicing of mutually exclusive exons is an important mechanism for increasing protein diversity in eukaryotes. The insect Mhc (myosin heavy chain gene produces all different muscle myosins as a result of alternative splicing in contrast to most other organisms of the Metazoa lineage, that have a family of muscle genes with each gene coding for a protein specialized for a functional niche. Results The muscle myosin heavy chain genes of 22 species of the Arthropoda ranging from the waterflea to wasp and Drosophila have been annotated. The analysis of the gene structures allowed the reconstruction of an ancient muscle myosin heavy chain gene and showed that during evolution of the arthropods introns have mainly been lost in these genes although intron gain might have happened in a few cases. Surprisingly, the genome of Aedes aegypti contains another and that of Culex pipiens quinquefasciatus two further muscle myosin heavy chain genes, called Mhc3 and Mhc4, that contain only one variant of the corresponding alternative exons of the Mhc1 gene. Mhc3 transcription in Aedes aegypti is documented by EST data. Mhc3 and Mhc4 inserted in the Aedes and Culex genomes either by gene duplication followed by the loss of all but one variant of the alternative exons, or by incorporation of a transcript of which all other variants have been spliced out retaining the exon-intron structure. The second and more likely possibility represents a new type of a 'partially' processed pseudogene. Conclusion Based on the comparative genomic analysis of the alternatively spliced arthropod muscle myosin heavy chain genes we propose that the splicing process operates sequentially on the transcript. The process consists of the splicing of the mutually exclusive exons until one exon out of the cluster remains while retaining surrounding intronic sequence. In a second step splicing of introns takes place. A related mechanism could be responsible for

  14. Burdigalian turbid water patch reef environment revealed by larger benthic foraminifera

    Science.gov (United States)

    Novak, V.; Renema, W.; Throughflow-project

    2012-04-01

    Ancient isolated patch reefs outcropping from siliciclastic sediments are a trademark for the Miocene carbonate deposits occurring in East Kalimantan, Indonesia. They develop in transitional shelf sediments deposited between deltaic and deep marine deposits (Allen and Chambers, 1998). The Batu Putih Limestone (Wilson, 2005) and similar outcrops in adjacent areas have been characterized as shallow water carbonates influenced by high siliciclastic input, showing low relief patch reefs in turbid waters. Larger benthic foraminifera (LBF) are excellent markers for biochronology and paleoenvironmental reconstruction. This study aims to reveal age and paleoenvironment of a shallow water carbonate patch reef developed in mixed depositional system by using LBF and microfacies analysis. The studied section is located near Bontang, East Kalimantan, and is approximately 80 m long and 12 m high. It is placed within Miocene sediments in the central part of the Kutai Basin. Patch reef and capping sediments were logged through eight transects along section and divided into nine different lithological units from which samples were collected. Thin sections and isolated specimens of larger benthic foraminifera were analyzed and recognized to species level (where possible) providing age and environmental information. Microfacies analysis of thin sections included carbonate classification (textural scheme of Dunham, 1962) and assemblage composition of LBF, algae and corals relative abundance. Three environmentally indicative groups of LBF were separated based on test morphology, habitat or living relatives (Hallock and Glenn, 1986). Analysed foraminifera assemblage suggests Burdigalian age (Tf1). With use of microfacies analysis nine successive lithological units were grouped into five facies types. Paleoenvironmental reconstruction of LBF fossil assemblage indicate two cycles of possible deepening recorded in the section. Based on high muddy matrix ratio in analyzed thin-sections we

  15. Geoarchaeologic and paleopedologic evidences for the holocene paleoenvironmental evolution of the Crisuri plain (Western Romania

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    Nicolae Josan

    2007-12-01

    Full Text Available This study is based mainly on the correlation established between the fossil soils identified within several archaeological sites from Crisuri Plain as well as the information that could be obtained by analysing their content in artefacts and paleozoological remains and takes into account the validity of some consecrated points of view, almost unanimously accepted concerning the paleoenvironmental evolution of the North Western part of Romania. Some very popular "clichés" such as the supposition of the warm and pregnant humid climate during the Atlantic period, fact which determined the wide spreading of the forests or that explains the appearance of the steppe and forest-steppe elements as a result of an intense deforestation process, seems to be contested by paleopedologic and geoarchaelogic arguments that prove the existence of several periods of climatic optimum separated by paleoenvironmental crisis periods.L'étude a pour objectif de préciser l'évolution holocène des secteurs inférieurs de la Plaine de Crişuri, domaine marqué par des mouvements de subsidence et par une tectonique encore active. La méthode utilisée s'appuie sur les relations entre différents éléments : les sols fossiles dans lesquels ont été trouvés des fragments de céramiques dont l'appartenance culturelle et de l'âge peuvent être déterminés à l'aide des méthodes archéologiques ; le rapport spatial entre les sites archéologiques et les facteurs géomorphologiques ; les données des recherches paléobotaniques et paléozoologiques existantes ; les connaissances sur les sols fossiles dont des profils représentatifs sont décrits dans des études récentes sur l'évolution holocène des paysages de la Plaine de la Transylvanie ; les travaux récents sur la reconstruction paléoenvironnementale de l'Holocène supérieur de l'Europe Centrale.Les sites contenant des vestiges de plusieurs périodes successives sont nombreux dans la plaine de Cri

  16. A multi-proxy geochemical investigation of late-Quaternary paleoenvironmental change from Burial Lake, Noatak National Preserve, Alaska

    Science.gov (United States)

    Finkenbinder, M. S.; Abbott, M.; Stoner, J. S.; Dorfman, J. M.

    2012-12-01

    Here we present a new multi-proxy geochemical analysis of paleoenvironmental change inferred from sediment cores recovered from Burial Lake (68.434° N, 159.174° W; 430 m ASL) in northwest Alaska. Previous work on cores from 7.9 m water depth sampled at comparatively low resolution revealed basal sediments date to ~ 40,000 cal yr BP and an unconformity during a period of aridity around the Last Glacial Maximum (LGM). We therefore collected multiple overlapping Livingston cores from the lake depocenter (21.5 m water depth) in the summer of 2010 in an effort to develop a temporally continuous, high resolution record spanning prior to the LGM to the present. We focus our interpretations on a 6.51 m core developed through wiggle matching proxy data from core sites A10 and C10. We use traditional laboratory methods and investigate new approaches to assess changes in sedimentation and productivity. We are measuring dry bulk density, organic matter via Loss-on-ignition at 550° C, biogenic silica, magnetic susceptibility, grain size via laser diffractometry, and elemental abundances via scanning x-ray fluorescence (XRF). Future research seeks to test the reliability of two commonly used XRF proxies, for organic matter (incoherence/coherence ratios) and aquatic productivity (Si/Ti ratios). Age control is provided by 12 Accelerator Mass Spectrometry radiocarbon dates of discrete terrestrial macrofossils. Results from these analyses indicate that the depocenter core is continuous and the sediment record spans the last ~ 38,000 cal yr BP and most importantly contains sediments spanning the LGM. Preliminary geochemical results demonstrate substantial cyclicity in organic matter and aquatic productivity beginning in the late-glacial. We seek to analyze the periodicity of these proxies through spectral analysis, although initial observations suggest multi-century to millennial scale variability. In addition, we note the presence of two abrupt, non-linear transitions in organic

  17. Radial ooids from Great Salt Lake (Utah) as paleoenvironmental archives: Insights from radiocarbon chronology and stable isotopes

    Science.gov (United States)

    Paradis, O. P.; Corsetti, F. A.; Bardsley, A.; Hammond, D. E.; Xu, X.; Walker, J. C.

    2017-12-01

    Ooids (laminated, carbonate coated grains) are ubiquitous in the geologic record in marine and lacustrine settings, and thus remain a common target for geochemical analysis to understand modern and ancient aqueous environments. However, the processes governing ooid formation remain unclear. Recently, radiocarbon dating has revealed that modern marine ooids grow slowly (Beaupre et al. 2015), and laboratory experiments have highlighted the importance of sediment transport and abrasion on net growth rates and ooid size (Trower et al. 2017). Ooid cortex structure includes micritic, tangential and/or radially oriented fabrics. Most modern marine ooids have tangential or micritic cortices, whereas many ancient ooids have radial cortices—thus, there is a need to understand how radial ooids in ancient rocks might inform us about their depositional environment. The Great Salt Lake (GSL), Utah, provides a unique environment to assess the growth rate of primary radial aragonitic ooids. Ooids collected near Antelope Island in the south arm of GSL were sieved, the 355-500 µm fraction was sequentially leached, and 14C of the evolved gas was analyzed to provide a time series of growth. The oldest inorganic carbon of this size fraction has an apparent 14C age of 6600 yr BP, with subsequent growth spanning over 6,000 years. Closed-basin lakes are particularly susceptible to a "reservoir effect" which results in anomalously old apparent radiocarbon ages. The 14C age of the modern dissolved inorganic carbon (DIC) of the south arm was measured to be 295 yr BP, a reservoir age comparable to estimates from lacustrine cave carbonates (McGee et al. 2012). Net growth rate of south arm ooids ranges between 0.01-0.025 µm per year. The δ13C of the outermost cortex suggests that the ooids resemble the modern DIC in the south arm water, suggesting ooids precipitate in equilibrium with lake water. Finer-scale structure in the δ13C of the ooid cortex through time suggests lake level changed

  18. Regionally heterogeneous paleoenvironmental responses in the West African and South American monsoon systems on glacial to millennial timescales

    Science.gov (United States)

    Shanahan, T. M.; Hughen, K. A.; van Mooy, B.; Overpeck, J. T.; Baker, P. A.; Fritz, S.; Peck, J. A.; Scholz, C. A.; King, J. W.

    2008-12-01

    Although millennial-scale paleoenvironmental changes have been well characterized for high latitude sites, short-term climate variability in the tropics is less well understood. While the Intertropical Convergence Zone may act as an integrator of tropical climate changes, regional factors also play an important role in controlling the tropical response to climate forcing. Understanding these influences, and how they modulate the response to global climate forcing under different mean climate states is thus important for assessing how the tropics may respond to future climate change. Here, we examine new centennial-resolution records of paleoenvironmental change from isotopic and relative abundance data from molecular biomarkers in sediment cores from Lake Bosumtwi and Lake Titicaca. We assess the relative response of the West African and South American monsoon systems to millennial and suborbital-scale climate variability over the last ca. 30,000 years. While there is evidence for synchronous climate variability in the two systems, the dominant paleoenvironmental changes appear largely decoupled, highlighting the importance of regional climatology in controlling the response to climate forcing in tropical regions.

  19. Palinomorfos e partículas de carvões nos sedimentos holocênicos na região do alto rio Paraná e sua aplicação nas reconstruções paleoambientais e paleoclimáticas - DOI: 10.4025/actascibiolsci.v30i4.5864 Palynomorphs and charcoal particles in Holocene sediments of the upper Paraná river area: paleoenvironmental and paleoclimatic reconstruction - DOI: 10.4025/actascibiolsci.v30i4.5864

    Directory of Open Access Journals (Sweden)

    José Cândido Stevaux

    2008-11-01

    Full Text Available Foram analisadas as amostras de dois perfis num horizonte de paleossolo da planície de inundação do rio Paraná, sendo processada uma datação pelo método 14C na profundidade de 1,95 m, atingindo idade de 1.700 ± 70 anos AP. Foram avaliados pólen e esporos de plantas terrestres juntamente com as partículas de carvão. Dois estágios, no desenvolvimento paleoambiental, foram estabelecidos com respeito ao desenvolvimento da vegetação. Um estágio mais antigo é caracterizado pela distribuição limitada das florestas ripárias e predomínio de campo nas condições de clima mais seco. Quantidade notável de partículas de carvão encontradas nas amostras deste estágio sugere ocorrência de queimadas locais ou regionais durante um clima seco. No estágio mais novo, a expansão das ripárias em resposta ao aumento das precipitações atmosféricas ocorreu. Pólen de plantas cultivadas, daninhas e invasoras, encontrado nos sedimentos, indica o desenvolvimento da agricultura neste estágio. Maior freqüência de partículas de carvão em mesmos sedimentos provavelmente indique ocorrência de queimadas locais associadas ao desmatamento da região.The samples from two profiles of flood plain deposits of the Paraná River were studied. One sample at the depth of 1.95 m was dated by 14C as 1,700 ± 70 yr BP. Palynological data and charcoal particles were obtained from fluvial sediments and paleosoil. Two principal stages in paleoenvironmental development were established. The early stage is characterized by the limited distribution of riparian forests and predominance of mesophyllous grassland under a condition of relatively dry climate. The deposition of charcoal particles in such predominant quantity was the result of local or regional burns. During the more recent stage, a natural enlargement of riparian forests occurred in conjunction with an increase in rainfall. Land use of that region may be confirmed by relatively frequent presence of

  20. Source-reconstruction of event-related fields reveals hyperfunction and hypofunction of cortical circuits in antipsychotic-naive, first-episode schizophrenia patients during Mooney face processing.

    Science.gov (United States)

    Rivolta, Davide; Castellanos, Nazareth P; Stawowsky, Cerisa; Helbling, Saskia; Wibral, Michael; Grützner, Christine; Koethe, Dagmar; Birkner, Katharina; Kranaster, Laura; Enning, Frank; Singer, Wolf; Leweke, F Markus; Uhlhaas, Peter J

    2014-04-23

    Schizophrenia is characterized by dysfunctions in neural circuits that can be investigated with electrophysiological methods, such as EEG and MEG. In the present human study, we examined event-related fields (ERFs), in a sample of medication-naive, first-episode schizophrenia (FE-ScZ) patients (n = 14) and healthy control participants (n = 17) during perception of Mooney faces to investigate the integrity of neuromagnetic responses and their experience-dependent modification. ERF responses were analyzed for M100, M170, and M250 components at the sensor and source levels. In addition, we analyzed peak latency and adaptation effects due to stimulus repetition. FE-ScZ patients were characterized by significantly impaired sensory processing, as indicated by a reduced discrimination index (A'). At the sensor level, M100 and M170 responses in FE-ScZ were within the normal range, whereas the M250 response was impaired. However, source localization revealed widespread elevated activity for M100 and M170 in FE-ScZ and delayed peak latencies for the M100 and M250 responses. In addition, M170 source activity in FE-ScZ was not modulated by stimulus repetitions. The present findings suggest that neural circuits in FE-ScZ may be characterized by a disturbed balance between excitation and inhibition that could lead to a failure to gate information flow and abnormal spreading of activity, which is compatible with dysfunctional glutamatergic neurotransmission.

  1. A Permian methane seep system as a paleoenvironmental analogue for the pre-metazoan carbonate platforms

    Directory of Open Access Journals (Sweden)

    Lucas Veríssimo Warren

    Full Text Available ABSTRACT: Following the rise of metazoans, the beginning of bioclasticity and substrate competition, the saga of microbial mats was in a fluctuating decline in the end of the Neoproterozoic era. Increases in diversity during the Phanerozoic and punctual upturns in the microbial carbonate production occured after the events of global mass extinctions. Gradually along the Phanerozoic, the microbial colonies occupied isolated niches and grazers-free environments, characterized by physically and/or geochemically stressful conditions, such as those found in saline bays, alkaline lakes and hydrothermal or cold seep vents. Here we report one of the oldest occurrences of a vent camp coupled with cold seepage of methane in the geologic record, associated with well-preserved microbialites and elephant skin structures. During the seep activity, oxygen depletion and high salinity conditions are prohibitive for complex animal life, clearing the way to microbial colonies to flourish. Due to the co-occurrence of high adaptability and low competitiveness of microbial forms, they became highly specialized in stressful conditions. We argue that the sporadic microbial mat upturns in Earth’s history are not restricted to geological periods, following massive death of metazoan species; they also may occur in response to punctual paleoenvironmental conditions that enable microbial colonies to growth. Indeed, the Phanerozoic geological record is punctuated of these examples, in a kind of hide-and-seek game of Precambrian times.

  2. Post-Glacial and Paleo-Environmental History of the West Coast of Vancouver Island

    Science.gov (United States)

    Dallimore, A.; Enkin, R. J.

    2005-12-01

    Annually laminated sediments in anoxic fjords are potentially ideal paleoclimate recorders, particularly once proxy measurements for atmospheric, oceanographic and sedimentological conditions have been calibrated. On the west coast of Canada, these sediments also record the changing environment as glaciers retreated from this area about 12 ka y BP. In Effingham Inlet, a 40 m core taken from the French ship the Marion Dufresne as part of the international IMAGES/PAGES program, gives evidence of an isolation basin at maximum glacial isostatic rebound and lowest paleo-sea level followed by eustatic sea level rise about 10 ka y BP. The Late Pleistocene record also marks dramatic changes in glacial sedimentary source and transport. Excellent chronological control is provided by complementary yet independent dating methods including radiocarbon dates on both plants and shells, identification of the Mazama Ash, varve counting and paleomagnetic, paleosecular variation correlations in the lower, pro-glacial section of the core which does not contain organic material. Paleoenvironmental evidence from this core provides information on immediate post-glacial conditions along the coast and rapid climatic changes throughout the Holocene, with implications for the possibility of early human migration routes and refugia.

  3. Compound-Specific Radiocarbon Dating Reveals the Age Distribution of Plant-Wax Biomarkers Exported to the Bengal Fan

    Science.gov (United States)

    Galy, V.; French, K. L.; Hein, C. J.; Haghipour, N.; Wacker, L.; Kudrass, H.; Eglinton, T. I.

    2017-12-01

    The stable isotope composition of leaf-wax compounds preserved in lacustrine and marine sediments has been widely used to reconstruct terrestrial paleo-environments. However, the timescales of plant-wax storage in continental reservoirs before riverine export are not well known, representing a key uncertainty in paleo-environment studies. We couple numerical models with bulk and leaf-wax fatty acid organic 13C and 14C signatures hosted in a high-deposition-rate sediment core from the Bengal shelf canyon in order to estimate storage timescales within the Ganges-Brahmaputra catchment area. The fatty acid 14C record reveals a muted nuclear weapons bomb spike, requiring that the Ganges-Brahmaputra river system exports a mixture of young and old (pre-aged) leaf-wax compounds. According to numerical simulations, 79-83% of the leaf-wax fatty acids in this core are sourced from continental reservoirs that store organic carbon on an average of 1000-1200 calendar years, while the remainder has an average age of 15 years. These results demonstrate that a majority of the leaf-wax compounds produced in the Ganges-Brahmaputra river basin was stored in soils, floodplains, and wetlands prior to its export to the Bengal Fan. We will discuss the implications of these findings for plant-wax based paleoenvironmental records.

  4. Climate Reconstructions

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The NOAA Paleoclimatology Program archives reconstructions of past climatic conditions derived from paleoclimate proxies, in addition to the Program's large holdings...

  5. On the paleoenvironmental potential of 253 newly discovered pine stumps from Zurich, Switzerland

    Science.gov (United States)

    Reinig, Frederick; Nievergelt, Daniel; Esper, Jan; Friedrich, Michael; Helle, Gerhard; Hellmann, Lena; Kromer, Bernd; Morganti, Sandro; Pauly, Maren; Sookdeo, Adam; Tegel, Willy; Treydte, Kerstin; Wacker, Lukas; Büntgen, Ulf

    2017-04-01

    The transition from the last Ice Age to the early Holocene 15'000-10'000 BP represents a close natural analog to the ongoing and predicted rates of anthropogenic climate change. A reduced quality and quantity of high-resolution proxy archives during this period, however, limits our understanding of the magnitude and pace of Late Glacial (LG) environmental variability. Here, we present the world's best preserved, most replicated and oldest forest remains: A total of 253 subfossil pine stumps were recently discovered in Zurich. The combined approach of tree-ring and radiocarbon (14C) measurements results in an absolutely dated Preboreal Swiss tree-ring width chronology and eight floating chronologies. With tree ages ranging between 41 and 506 years, often including pith and bark, and a mean segment length of 163 years, this exceptional find is distributed over nearly 2'000 years between the Allerød and the Preboreal. Together with 200 previously collected LG pines from the greater Zurich region, this study sets a benchmark in terms of sample replication and dating precision for stable more dynamic climatic periods such as the Laacher See eruption, the Older and Younger Dryas. The paleoenvironmental significance would even increase when annually resolved 14C-measurements help fixing a major, Northern Hemispheric gap in the absolutely dated dendro time series during the Younger Dryas. While overcoming this interlude, our results further emphasize the importance of interdisciplinary research on these striking LG climatic shifts to better understand and assess their ecological and environmental impact.

  6. Paleoenvironmental and paleohydrochemical conditions of dolomite formation within a saline wetland in arid northwest Australia

    Science.gov (United States)

    Mather, Caroline C.; Skrzypek, Grzegorz; Dogramaci, Shawan; Grierson, Pauline F.

    2018-04-01

    Groundwater dolocrete occurring within the Fortescue Marsh, a large inland wetland in the Pilbara region of northwest Australia, has been investigated to provide paleoenvironmental and paleohydrological records and further the understanding of low temperature dolomite formation in terrestrial settings over the Quaternary Period. Two major phases of groundwater dolocrete formation are apparent from the presence of two distinct units of dolocrete, based on differences in depth, δ18O values and mineral composition. Group 1 (G1) occurs at depth 20-65 m b.g.l. (below ground level) and contains stoichiometric dolomite with δ18O values of -4.02-0.71‰. Group 2 (G2) is shallower (0-23 m b.g.l.), occurring close to the current groundwater level, and contains Ca-rich dolomite ± secondary calcite with a comparatively lower range of δ18O values (-7.74 and -6.03‰). Modelled δ18O values of paleogroundwater from which older G1 dolomite precipitated indicated highly saline source water, which had similar stable oxygen isotope compositions to relatively old brine groundwater within the Marsh, developed under a different hydroclimatic regime. The higher δ18O values suggest highly evaporitic conditions occurred at the Marsh, which may have been a playa lake to saline mud flat environment. In contrast, G2 dolomite precipitated from comparatively fresher water, and modelled δ18O values suggested formation from mixing between inflowing fresher groundwater with saline-brine groundwater within the Marsh. The δ18O values of the calcite indicates formation from brackish to saline groundwater, which suggests this process may be associated with coeval gypsum dissolution. In contrast to the modern hydrology of the Marsh, which is surface water dependent and driven by a flood and drought regime, past conditions conducive to dolomite precipitation suggest a groundwater dependent system, where shallow groundwaters were influenced by intensive evaporation.

  7. Molecular marker to identify radiolarian species -toward establishment of paleo-environmental proxy-

    Science.gov (United States)

    Ishitani, Y.

    2017-12-01

    Marine fossilized unicellular plankton are known to have many genetically divergent species (biological species) in the single morphological species and these biological species show the species-specific environments much more precisely than that of morphological species. Among these plankton, Radiolaria are one of the best candidates for time- and environmental-indicators in the modern and past oceans, because radiolarians are the only group which represent entire water column from shallow to deep waters. However, the ecology and evolution of radiolarian were traditionally studied in paleontology and paleoceanography by morphological species. Even Radiolaria has a huge potential for novel proxy of wide and deep environments, there is no criterion to identify the biological species. The motivation for this study is setting the quantitative delimitation to establish the biological species of radiolarians based on molecular data, for leading the future ecological and paleo-environmental study. Identification of the biological species by ribosomal DNA sequences are mainly based on two ways: one is the evolutionary distance of the small subunit (SSU) rDNA, the internal transcribed spacer region of ribosomal DNA (ITS1 and 2), and the large subunit (LSU) rDNA; and the other is the secondary structure of ITS2. In the present study, all four possible genetic markers (SSU, ITS1, ITS2, and LSU rDNA) were amplified from 232 individuals of five radiolarian morphological species and applied to examine the evolutionary distance and secondary structure of rDNA. Comprehensive survey clearly shows that evolutionary distance of ITS1 rDNA and the secondary structure of ITS2 is good to identify the species. Notably, evolutionary distance of ITS1 rDNA is possible to set the common delimitation to identify the biological species, as 0.225 substitution per site. The results show that the ITS1 and ITS 2 rDNA could be the criterion for radiolarian species identification.

  8. Water-Level Reconstruction and its Implications for Late Pleistocene Paleontological Site Formation in Hoyo Negro, a Submerged Subterranean Pit in Quintana Roo, Mexico

    Science.gov (United States)

    Rissolo, D.; Reinhardt, E. G.; Collins, S.; Kovacs, S. E.; Beddows, P. A.; Chatters, J. C.; Nava Blank, A.; Luna Erreguerena, P.

    2014-12-01

    A massive pit deep within the now submerged cave system of Sac Actun, located along the central east coast of the Yucatan Peninsula, contains a diverse fossil assemblage of extinct megafauna as well as a nearly complete human skeleton. The inundated site of Hoyo Negro presents a unique and promising opportunity for interdisciplinary Paleoamerican and paleoenvironmental research in the region. Investigations have thus far revealed a range of associated features and deposits which make possible a multi-proxy approach to identifying and reconstructing the natural and cultural processes that have formed and transformed the site over millennia. Understanding water-level fluctuations (both related to, and independent from, eustatic sea level changes), with respect to cave morphology is central to understanding the movement of humans and animals into and through the cave system. Recent and ongoing studies involve absolute dating of human, faunal, macrobotanical, and geological samples; taphonomic analyses; and a characterization of site hydrogeology and sedimentological facies, including microfossil assemblages and calcite raft deposits.

  9. Georeferenced historical forest maps of Bukovina (Northern Romania) - important tool for paleoenvironmental analyses

    Science.gov (United States)

    Popa, Ionel; Crǎciunescu, Vasile; Candrea, Bogdan; Timár, Gábor

    2010-05-01

    Austrian and Romanian forest surveyors, to correctly georeference the maps. A case study, demonstrating the usefulness of such old cartographic informations in understanding the forest landscape evolution is also included. The georeferenced map sheets provide an excellent basis of the paleo-environmental researches. Assessing the changes of the forest cover ratio is important for the analysis of the recent flash flood events at the eastern slopes of the Carpathian Mts.

  10. Vaginal reconstruction

    International Nuclear Information System (INIS)

    Lesavoy, M.A.

    1985-01-01

    Vaginal reconstruction can be an uncomplicated and straightforward procedure when attention to detail is maintained. The Abbe-McIndoe procedure of lining the neovaginal canal with split-thickness skin grafts has become standard. The use of the inflatable Heyer-Schulte vaginal stent provides comfort to the patient and ease to the surgeon in maintaining approximation of the skin graft. For large vaginal and perineal defects, myocutaneous flaps such as the gracilis island have been extremely useful for correction of radiation-damaged tissue of the perineum or for the reconstruction of large ablative defects. Minimal morbidity and scarring ensue because the donor site can be closed primarily. With all vaginal reconstruction, a compliant patient is a necessity. The patient must wear a vaginal obturator for a minimum of 3 to 6 months postoperatively and is encouraged to use intercourse as an excellent obturator. In general, vaginal reconstruction can be an extremely gratifying procedure for both the functional and emotional well-being of patients

  11. ACL Reconstruction

    Science.gov (United States)

    ... in moderate exercise and recreational activities, or play sports that put less stress on the knees. ACL reconstruction is generally recommended if: You're an athlete and want to continue in your sport, especially if the sport involves jumping, cutting or ...

  12. A 27 ka paleoenvironmental lake sediment record from Taro Co, central Tibetan Plateau: implications for the interplay between monsoon and the Westerlies

    Science.gov (United States)

    Wang, J.; Ma, Q.; Huang, L.; Ju, J.; Guo, Y.; Lin, X.; Li, Y.; Zhu, L.

    2017-12-01

    The climate of Tibetan Plateau (TP) is mainly influenced by the Indian Ocean Summer Monsoon (IOSM) and the Westerlies. The interaction of these two air masses is therefore a crucial scientific issue to understand how they impact the climate in this area, especially in the geological times. However, constrained by the available archives, researches on this topic are still very few in the hinterland of the TP, especially covering the Last Glacial Maximum (LGM) period. Here we present a new lake sediment record retrieved from Taro Co covering the last 27 ka to elucidate how the IOSM and the Westerlies interact and the possible mechanisms. Taro Co (486 km2, Dmax: 132m, 4565 m a.s.l., currently closed), located on the central TP, is a fresh lake with the major supply from glaciers. Two parallel piston cores as well as several gravity cores were retrieved from the deepest parts. These cores were correlated based on high resolution XRF scanning and a continuous 1069 cm-long core was finally integrated. Chronology was determined by 210Pb, 137Cs and AMS 14C measurements. Multidiscipline analyses including grain size, total organic carbon (TOC), total nitrogen, diatom, ostracod, pollen and n-alkanes were accomplished to reconstruct paleoenvironmental changes. The lake level of Taro Co was low since 27 cal ka BP indicated by very coarse materials and diatom assemblages with gradually increased temperature and salinity (TOC and carbonate getting higher). The terrestrial water input decreased continuously reflected by such elements as Si, Ti, Fe, K. It is likely that there was a sedimentation gap between 961-954cm, corresponding to 23.4 to 18.6 cal ka BP probably demonstrated Taro Co was very shallow at that period. The first prominent abrupt change of most proxies was observed at 14.7 cal ka BP showing a great lake deepening which likely indicated an enhancement of IOSM. There were several spells with abrupt changes of cold/warm stages before the Holocene and the Younger Dryas

  13. Geochemical characterization of the Jurassic Amran deposits from Sharab area (SW Yemen): Origin of organic matter, paleoenvironmental and paleoclimate conditions during deposition

    Science.gov (United States)

    Hakimi, Mohammed Hail; Abdullah, Wan Hasiah; Makeen, Yousif M.; Saeed, Shadi A.; Al-Hakame, Hitham; Al-Moliki, Tareq; Al-Sharabi, Kholah Qaid; Hatem, Baleid Ali

    2017-05-01

    Calcareous shales and black limestones of the Jurassic Amran Group, located in the Sharab area (SW Yemen), were analysed based on organic and inorganic geochemical methods. The results of this study were used to reconstruct the paleoenvironmental and paleoclimatic conditions during Jurassic time and their relevance to organic matter enrichment during deposition of the Amran calcareous shale and black limestone deposits. The analysed Amran samples have present-day TOC and Stotal content values in the range of 0.25-0.91 wt % and 0.59-4.96 wt %, respectively. The relationship between Stotal and TOC contents indicates that the Jurassic Amran deposits were deposited in a marine environment as supported by biomarker environmental indicators. Biomarker distributions also reflect that the analysed Amran deposits received high contributions of marine organic matter (e.g., algal and microbial) with minor amount of land plant source inputs. Low oxygen (reducing) conditions during deposition of the Jurassic Amran deposits are indicated from low Pr/Ph values and relatively high elemental ratios of V/Ni and V/(V + Ni). Enrichment in the pyrite grains and very high DOPT and high Fe/Al ratios further suggest reducing bottom waters. This paleo-redox (i.e., reducing) conditions contributed to preservation of organic matter during deposition of the Jurassic Amran deposits. Semi-arid to warm climatic conditions are also evidenced during deposition of the Amran sediments and consequently increased biological productivity within the photic zone of the water column during deposition. Therefore, the increased bio-productivity in combination with good preservation of organic matter identified as the major mechanisms that gave rise to organic matter enrichment. This contradicts with the low organic matter content of the present-day TOC values of less than 1%. The biomarker maturity data indicate that the analysed Amran samples are of high thermal maturity; therefore, the low present-day TOC

  14. Maxillary reconstruction

    Directory of Open Access Journals (Sweden)

    Brown James

    2007-12-01

    Full Text Available This article aims to discuss the various defects that occur with maxillectomy with a full review of the literature and discussion of the advantages and disadvantages of the various techniques described. Reconstruction of the maxilla can be relatively simple for the standard low maxillectomy that does not involve the orbital floor (Class 2. In this situation the structure of the face is less damaged and the there are multiple reconstructive options for the restoration of the maxilla and dental alveolus. If the maxillectomy includes the orbit (Class 4 then problems involving the eye (enopthalmos, orbital dystopia, ectropion and diplopia are avoided which simplifies the reconstruction. Most controversy is associated with the maxillectomy that involves the orbital floor and dental alveolus (Class 3. A case is made for the use of the iliac crest with internal oblique as an ideal option but there are other methods, which may provide a similar result. A multidisciplinary approach to these patients is emphasised which should include a prosthodontist with a special expertise for these defects.

  15. Rio de la Plata river: as paleoenvironmental focus using diatoms as proxies

    International Nuclear Information System (INIS)

    Perez, L; Garcia-Rodriguez, F; Hanebuth, T.

    2012-01-01

    The objective of this study is the reconstruction of the environmental history of the Rio de la Plata system in relation to the anthropogenic impact and historical changes in the flow with emphasis on salinity variations during the late Holocene. For this reason it was analyzed the composition of diatoms (grouped in freshwater (D), saline (S) and marine (M))

  16. Ecology of non marine Ostracoda from la Fe reservoir (El Retiro, Antioquia) and their potential application in paleoenvironmental studies

    International Nuclear Information System (INIS)

    Saldarriaga, Andrea; Torres, Martinez Jose Ignacio.

    2010-01-01

    Littoral macrophytes from the La Fe reservoir (El Retiro, Antioquia) were sampled for ostracoda during June and September of 2008. This allowed the identification of four genera and six species of ostracoda belonging to the Cyprididae and Candonidae families, where Chlamydotheca and Cypridopsis were found to be the dominant genera. Chlamydotheca unispinosa was the most abundant species in the assemblage. Furthermore, the environmental variables: temperature, electric conductivity, dissolved oxygen, and pH were also measured, in order to establish their relation to ostracoda taxa, using Canonical Correspondence Analysis (CCA). Results confirm the cosmopolitan character of Cypridopsis vidua and evidence the importance of plant substrate on the occurrence and distribution of the Cyprididae family. The possible application of the recorded ostracoda assemblage in paleoenvironmental interpretations is discussed.

  17. New tropical carcharhinids (chondrichthyes, carcharhiniformes) from the late Eocene early Oligocene of Balochistan, Pakistan: Paleoenvironmental and paleogeographic implications

    Science.gov (United States)

    Adnet, S.; Antoine, P.-O.; Hassan Baqri, S. R.; Crochet, J.-Y.; Marivaux, L.; Welcomme, J.-L.; Métais, G.

    2007-04-01

    New selachians (sharks and rays) have been collected from several late Eocene and early Oligocene marine localities in the Bugti Hills (Balochistan, Pakistan). Two new species of Requiem sharks (close to the Recent "Bull shark") are described : Carcharhinus balochensis and Carcharhinus perseus. The rest of the fauna is notable for the strong representation of Carcharhiniformes. These selachian faunas represent a unique tropical association for the Oligocene period and one of the first modern tropical selachian faunas, with modern taxa such as the two new species of "Bull sharks", Negaprion sp. and one of the first occurrences of Sphyrna sp. Moreover, these faunas permit paleoenvironmental interpretation of adjacent land masses. The relatively modern aspect of these faunas, compared with other contemporaneous and younger selachian associations from Atlantic and Mediterranean seas, suggests biogeographic isolation of selachian communities living in eastern and western parts of the Tethys before its final closure during the early-middle Miocene.

  18. LATE GLACIAL AND HOLOCENE BIOCLIMATIC RECONSTRUCTION IN SOUTHERN ITALY: THE TRIFOGLIETTI LAKE

    Directory of Open Access Journals (Sweden)

    E. Brugiapaglia

    2013-04-01

    Full Text Available The pollen record from Trifoglietti lake (Calabria region provides new information about the paleoenvironmental and palaeoclimatic changes occurred during the LateGlacial and Holocene period. The LateGlacial part of the record, for which only preliminary data is available, is a new and original sequence from southern Italy. The Holocene sequence, with 11 AMS radiocarbon dates shows a stable Fagus forest for the entire period. Apart from sporadic pastoralism activities and the selective exploitation of Abies, only a weak human impact is recognized in the pollen records. Lake level oscillations have been reconstructed and annual precipitations quantified using the Modern Analogue Technique. The reconstruction was effectuated both at millennial and centennial scale: the first shows an increasing of moisture from 11000 to 9400 cal BP and a maximum of humidity from 9400 to 6200 cal BP. Moreover, several climatic oscillations punctuated the Holocene and therefore superimposed the millennial trend.

  19. Cryo-electron Microscopy Reconstruction and Stability Studies of the Wild Type and the R432A Variant of Adeno-associated Virus Type 2 Reveal that Capsid Structural Stability Is a Major Factor in Genome Packaging.

    Science.gov (United States)

    Drouin, Lauren M; Lins, Bridget; Janssen, Maria; Bennett, Antonette; Chipman, Paul; McKenna, Robert; Chen, Weijun; Muzyczka, Nicholas; Cardone, Giovanni; Baker, Timothy S; Agbandje-McKenna, Mavis

    2016-10-01

    The adeno-associated viruses (AAV) are promising therapeutic gene delivery vectors and better understanding of their capsid assembly and genome packaging mechanism is needed for improved vector production. Empty AAV capsids assemble in the nucleus prior to genome packaging by virally encoded Rep proteins. To elucidate the capsid determinants of this process, structural differences between wild-type (wt) AAV2 and a packaging deficient variant, AAV2-R432A, were examined using cryo-electron microscopy and three-dimensional image reconstruction both at an ∼5.0-Å resolution (medium) and also at 3.8- and 3.7-Å resolutions (high), respectively. The high resolution structures showed that removal of the arginine side chain in AAV2-R432A eliminated hydrogen bonding interactions, resulting in altered intramolecular and intermolecular interactions propagated from under the 3-fold axis toward the 5-fold channel. Consistent with these observations, differential scanning calorimetry showed an ∼10°C decrease in thermal stability for AAV2-R432A compared to wt-AAV2. In addition, the medium resolution structures revealed differences in the juxtaposition of the less ordered, N-terminal region of their capsid proteins, VP1/2/3. A structural rearrangement in AAV2-R432A repositioned the βA strand region under the icosahedral 2-fold axis rather than antiparallel to the βB strand, eliminating many intramolecular interactions. Thus, a single amino acid substitution can significantly alter the AAV capsid integrity to the extent of reducing its stability and possibly rendering it unable to tolerate the stress of genome packaging. Furthermore, the data show that the 2-, 3-, and 5-fold regions of the capsid contributed to producing the packaging defect and highlight a tight connection between the entire capsid in maintaining packaging efficiency. The mechanism of AAV genome packaging is still poorly understood, particularly with respect to the capsid determinants of the required capsid

  20. PET reconstruction

    International Nuclear Information System (INIS)

    O'Sullivan, F.; Pawitan, Y.; Harrison, R.L.; Lewellen, T.K.

    1990-01-01

    In statistical terms, filtered backprojection can be viewed as smoothed Least Squares (LS). In this paper, the authors report on improvement in LS resolution by: incorporating locally adaptive smoothers, imposing positivity and using statistical methods for optimal selection of the resolution parameter. The resulting algorithm has high computational efficiency relative to more elaborate Maximum Likelihood (ML) type techniques (i.e. EM with sieves). Practical aspects of the procedure are discussed in the context of PET and illustrations with computer simulated and real tomograph data are presented. The relative recovery coefficients for a 9mm sphere in a computer simulated hot-spot phantom range from .3 to .6 when the number of counts ranges from 10,000 to 640,000 respectively. The authors will also present results illustrating the relative efficacy of ML and LS reconstruction techniques

  1. Multivariate study of trace element distribution in the geological record of Roñanzas Peat Bog (Asturias, N. Spain). Paleoenvironmental evolution and human activities over the last 8000 calyr BP.

    Science.gov (United States)

    Gallego, José Luis R; Ortiz, José E; Sierra, Carlos; Torres, Trinidad; Llamas, J F

    2013-06-01

    Trace element concentrations in the Roñanzas peat bog record reveal a contribution of natural processes but the influence of anthropogenic factors predominates in the last two millenniums, particularly aerosol deposition linked to mining and industrial activities in northern Spain. We observed that the Roñanzas record can be considered a preserved environment, suitable to search for local (major elements. Our study design represents a novel approach to assign natural vs. human contributions in peatlands. Therefore, synergies obtained by the simultaneous study of multivariate statistics and enrichment factors allow robust conclusions about paleoenvironmental evolution and human activities. Anthropogenic influence has also been reported in similar records in other parts of Europe, thereby suggesting large-scale sources for atmospheric pollution. However, here we revealed remarkable particularities, such as the association of Cd, Zn and Pb, mainly linked to regional and local factors (mining and more recently the metallurgical industry), whereas we propose that the occurrence of Hg is associated with a combination of regional factors and global atmospheric pollution. Copyright © 2013 Elsevier B.V. All rights reserved.

  2. Breast Reconstruction After Mastectomy

    Science.gov (United States)

    ... Cancer Prevention Genetics of Breast & Gynecologic Cancers Breast Cancer Screening Research Breast Reconstruction After Mastectomy On This Page What is breast reconstruction? How do surgeons use implants to reconstruct a woman’s breast? How do surgeons ...

  3. Breast reconstruction - implants

    Science.gov (United States)

    Breast implants surgery; Mastectomy - breast reconstruction with implants; Breast cancer - breast reconstruction with implants ... harder to find a tumor if your breast cancer comes back. Getting breast implants does not take as long as breast reconstruction ...

  4. Repeated fault rupture recorded by paleoenvironmental changes in a wetland sedimentary sequence ponded against the Alpine Fault, New Zealand

    Science.gov (United States)

    Clark, K.; Berryman, K. R.; Cochran, U. A.; Bartholomew, T.; Turner, G. M.

    2010-12-01

    At Hokuri Creek, in south Westland, New Zealand, an 18 m thickness of Holocene sediments has accumulated against the upthrown side of the Alpine Fault. Recent fluvial incision has created numerous exposures of this sedimentary sequence. At a decimetre to metre scale there are two dominant types of sedimentary units: clastic-dominated, grey silt packages, and organic-dominated, light brown peaty-silt units. These units represent repeated alternations of the paleoenvironment due to fault rupture over the past 7000 years. We have located the event horizons within the sedimentary sequence, and identified evidence to support earthquake-driven paleoenvironmental change (rather than climatic variability), and developed a model of paleoenvironmental changes over a typical seismic cycle. To quantitatively characterise the sediments we use high resolution photography, x-ray imaging, magnetic-susceptibility and total carbon analysis. To understand the depositional environment we used diatom and pollen studies. The organic-rich units have very low magnetic susceptibility and density values, with high greyscale and high total carbon values. Diatoms indicate these units represent stable wetland environments with standing water and predominantly in-situ organic material deposition. The clastic-rich units are characterised by higher magnetic susceptibility and density values, with low greyscale and total carbon. The clastic-rich units represent environments of flowing water and deep pond settings that received predominantly catchment-derived silt and sand. The event horizon is located at the upper contact of the organic-rich horizons. The event horizon contact marks a drastic change in hydrologic regime as fault rupture changed the stream base level and there was a synchronous influx of clastic sediment as the catchment responded to earthquake shaking. During the interseismic period the flowing-water environment gradually stabilised and returned to an organic-rich wetland. Such

  5. Stable isotopes in modern ostrich eggshell: a calibration for paleoenvironmental applications in semi-arid regions of southern Africa

    Science.gov (United States)

    Johnson, Beverly J.; Fogel, Marilyn L.; Miller, Gifford H.

    1998-07-01

    An isotopic study of modern ostrich eggshell (OES) is presented as a calibration for terrestrial paleoenvironmental applications. The stable carbon and nitrogen isotope fractionations of OES were determined for various organic fractions of eggshell by measuring the isotopic ratios of modern OES samples collected from controlled settings (i.e., zoos and farms) and corresponding ostrich diet. These fractionations were used to evaluate the relationship between the isotope composition of OES laid by free-range birds living in South Africa and their environment. The carbon isotope composition of the total organic and inorganic fractions of OES were enriched by 2 and 16‰, respectively, relative to the diet. In natural settings, the δ 13C values of both the organic and inorganic fractions of OES reflected that of ambient vegetation, with a noted dietary preference for C 3 plants. The nitrogen isotope composition of the total organic fraction of OES was 3‰ enriched relative to the diet, and varied inversely with mean annual precipitation (MAP) in natural settings. A decrease in MAP of 100 mm was accompanied by an increase in δ 15N values of approximately 1‰. The oxygen isotope composition of the inorganic fraction of the OES varied linearly with that of the drinking water in controlled settings. However, in natural settings, the δ 18O of OES values were highly variable and are thought to be controlled primarily by the δ 18O of ingested plant leaf-water. The stability of the isotopic signal in the organic fraction of OES through geologic time was evaluated through a series of heating experiments. The δ 13C and δ 15N values of the total organic fraction of heated OES increased by less than 0.6 and 0.2‰ for carbon and nitrogen, respectively, in spite of extensive diagenetic alteration and changes in the amino acid composition of the samples. The results of this study indicate that the stable carbon and nitrogen isotope composition of OES is relatively stable

  6. Small mammal taxonomy, taphonomy, and the paleoenvironmental record during the Middle and Upper Paleolithic at Geißenklösterle Cave (Ach Valley, southwestern Germany)

    Science.gov (United States)

    Rhodes, Sara E.; Ziegler, Reinhard; Starkovich, Britt M.; Conard, Nicholas J.

    2018-04-01

    the proportion of cold tundra adapted species, suggesting that the tundra expanded leading up to the Neanderthal depopulation, but no period of drastic climatic change is recognizable. The Aurignacian was significantly colder and drier than the preceding period, with cold tundra expansion reaching its apex (for the time period studied). Based on these results the Swabian landscape first encountered by Aurignacian groups was significantly less hospitable than that known to the earlier Middle Paleolithic populations. These results correlate well with past paleoenvironmental reconstructions based on sedimentary, botanical, and faunal assemblages. There is no evidence in the small mammal record that climatic pressure drove Neanderthals from the Ach Valley, instead it seems likely they enjoyed a more temperate environment than later Aurignacian groups. Ongoing work focused on greater resolution of these climatic oscillations at similarly well-dated Swabian sites will shed further light on the timing and speed of this climatic shift and the response of the biological communities affected, including early human groups.

  7. The southernmost record of a large erethizontid rodent (Hystricomorpha: Erethizontoidea) in the Pleistocene of South America: Biogeographic and paleoenvironmental implications

    Science.gov (United States)

    Vezzosi, Raúl I.; Kerber, Leonardo

    2018-03-01

    The South American porcupines (Erethizontidae) are included in two genera: Chaetomys and Coendou. The latter is a very speciose taxon, with about 13 living species. During at least the late Pliocene-early Pleistocene, erethizontids immigrated to Central and North America during the Great American Biotic Interchange. Although some Pleistocene fossils have been reported, the Quaternary history of this clade is still understudied. The only known extinct species is Coendou magnus. In this work, a fossil of a porcupine is reported from an Upper Pleistocene fluvial sedimentary sequence cropping out in the Northern Pampa geomorphological region, Santa Fe Province, Argentina. Despite this group having different living forms widely distributed in South American Neotropical woodland habitats, the Pleistocene occurrences of Erethizontidae are scarce and limited to Upper Pleistocene deposits from Bolivia, Brazil, and Uruguay. Currently, the specimen here reported represents the only Pleistocene porcupine from Argentina with a stratigraphical context. The morphological characters as well as the dimensions indicate that it is close to the Pleistocene erethizontid Coendou magnus. In this context, the presence of this erethizontid in such a southern locality, together with other taxa recorded from this site and the associated geological and paleoenvironmental evidence, indicates subtropical conditions, compared with the current conditions, which may have allowed a southern displacement of taxa more related to woodlands and xeric subtropical environments.

  8. Middle to Late Eocene paleoenvironmental changes in a marine transgressive sequence from the northern Tethyan margin (Adelholzen, Germany)

    Science.gov (United States)

    GEBHARDT, Holger; ĆORIĆ, Stjepan; DARGA, Robert; BRIGUGLIO, Antonino; SCHENK, Bettina; WERNER, Winfried; ANDERSEN, Nils; SAMES, Benjamin

    2015-01-01

    The northern Tethyan margin is a key region for determining environmental changes associated with the collision of continental and oceanic tectonic plates and Alpine orogeny. Herein we investigated Middle to Late Eocene neritic to bathyal sediments deposited during an interval of unstable climatic conditions. In order to quantify paleoenvironmental changes, we developed a detailed age model based on biozonations of planktic foraminifera, calcareous nannoplankton, and larger benthic foraminifera. The section at Adelholzen covers the almost complete Lutetian Stage (calcareous nannoplankton zones NP15a-16, planktic foraminifera zones E8-11, shallow benthic (foraminifera) zones SBZ13-15) and large parts of the Priabonian Stage (NP18-20, E14/15), while the intermediate Bartonian Stage (NP17) is completely missing. Foraminiferal, calcareous nannoplankton, and macrofossil assemblages were analyzed for changes in paleo-water depth, mixing and stratification, paleo-primary productivity (pPP), food supply, and bottom water oxygenation. Paleo-water depth estimates range from 50 m (middle neritic, early Lutetian) to nearly 500 m (upper bathyal, late Priabonian). The combination of assemblage composition, planktic and benthic foraminiferal accumulation rates, and derived parameters (carbon-flux to sea floor, pPP) enabled us to identify a series of distinct paleoceanographic events of at least regional significance. Such events are characterized by considerable changes in primary productivity or reduced bottom water ventilation. Calculated pPP-values indicate oligotrophic conditions throughout. PMID:26346423

  9. Adaptive algebraic reconstruction technique

    International Nuclear Information System (INIS)

    Lu Wenkai; Yin Fangfang

    2004-01-01

    Algebraic reconstruction techniques (ART) are iterative procedures for reconstructing objects from their projections. It is proven that ART can be computationally efficient by carefully arranging the order in which the collected data are accessed during the reconstruction procedure and adaptively adjusting the relaxation parameters. In this paper, an adaptive algebraic reconstruction technique (AART), which adopts the same projection access scheme in multilevel scheme algebraic reconstruction technique (MLS-ART), is proposed. By introducing adaptive adjustment of the relaxation parameters during the reconstruction procedure, one-iteration AART can produce reconstructions with better quality, in comparison with one-iteration MLS-ART. Furthermore, AART outperforms MLS-ART with improved computational efficiency

  10. Tree-rings and climate: Implications for Great Basin paleoenvironmental studies

    International Nuclear Information System (INIS)

    Graybill, D.A.; Rose, M.R.; Nials, F.L.

    1994-01-01

    The Quaternary Sciences Center of the Desert Research Institute is currently conducting a multi-phased study of floral, faunal, and geomorphic response to long- and short-term climate change and extremes in assessing Yucca Mountain's suitability as a high-level nuclear waste repository. Preliminary results of these studies indicate synchronous responses in late Holocene tree-ring, palynology and geomorphic records. A tree-ring chronology for paleoclimatic reconstruction is developed by collection of multiple cores from 20-60 living trees and a similar number of dead trees in a climate-sensitive location. Samples are cross-dated and every growth layer in each specimen is measured to the nearest .001 mm. The measured ring width series potentially contain a variety of climatic, biological, and anthropogenic signals. Each ring width series is subjected to a numerical standarization procedure that removes an age-related biological growth trend, reduces endogeneous and exogenous stand disturbance factors, and maximizes any climatic signal that is present. Each of these empirically defined components can be graphically portrayed and subjected to further analyses. The geophysical signal analysis techniques involved in the standarized protocol are well-documented and established. The final result is a tree-ring chronology that represents regional paleoclimatic variability over the time represented by the sample population

  11. The microfauna assemblages as indicators of paleoenvironmental changes in the Miocene fluvial- lacustrine cycles (NE Duero Basin, Spain

    Directory of Open Access Journals (Sweden)

    A. Herrero-Hernández

    2016-11-01

    Full Text Available The siliclastic and carbonate deposits are interbedded in the Villadiego area (Miocene, NE Duero Basin. They have been subdivided into two high-rank depositional sequences: DDS and CDS. The sedimentary analysis of these units and the study of the microfauna content, mainly ostracods, led to the identification of lacustrine-fluvial interaction systems. The sedimentary characteristics reveal the existence of fluvial systems of gravel, flood plains and lacustrine systems that were interconnected and intimately related in north-south direction. In the sedimentological analysis, thirteen types of fluvial and lacustrine lithofacies and six genetic facies associations were recognized. The top of DDS is the result of lake level risings. The CDS shows a deepening-shallowing cycle. The ostracod micropaleontological analysis of the sediments have been studied, with the aim of reconstructing the palaeoenvironmental evolution of this area. These microfauna assemblages integrated with the analysis of the sedimentary facies allowed to conclude the existence of lakes with a water-bearing level of few tens of meters. A change in the chemical conditions of the waters, which evolved from oligohaline and carbonated to mesohaline and sulphated is concluded.

  12. Compound-specific C- and H-isotope compositions of enclosed organic matter in carbonate rocks: Implications for source identification of sedimentary organic matter and paleoenvironmental reconstruction

    International Nuclear Information System (INIS)

    Xiong Yongqiang; Wang Yanmei; Wang Yongquan; Xu Shiping

    2007-01-01

    The Bohai Bay Basin is one of the most important oil-producing provinces in China. Molecular organic geochemical characteristics of Lower Paleozoic source rocks in this area have been investigated by analyzing chemical and isotopic compositions of solvent extracts and acid-released organic matter from the Lower Paleozoic carbonate rocks in the Jiyang Sub-basin of the Bohai Bay Basin. The results indicate that enclosed organic matter in carbonate rocks has not been recognizably altered by post-depositional processes. Two end-member compositions are suggested for early organic matter trapped in the Lower Paleozoic carbonate rocks: (1) a source dominated by aquatic organisms and deposited in a relatively deep marine environment and (2) a relatively high saline, evaporative marine depositional environment. In contrast, chemical and isotopic compositions of solvent extracts from these Lower Paleozoic carbonate rocks are relatively complicated, not only inheriting original characteristics of their precursors, but also overprinted by various post-depositional alterations, such as thermal maturation, biodegradation and mixing. Therefore, the integration of both organic matter characteristics can provide more useful information on the origin of organic matter present in carbonate rocks and the environments of their deposition

  13. Diagenetic versus detrital origin of the magnetic susceptibility variations in some carbonate Frasnian-Famennian boundary sections from Northern Africa and Western Europe: implications for paleoenvironmental reconstructions

    Science.gov (United States)

    Riquier, Laurent; Averbuch, Olivier; Devleeschouwer, Xavier; Tribovillard, Nicolas

    2010-10-01

    To provide a new insight into the diagenetic versus detrital origin of the magnetic susceptibility variations in ancient carbonate sequences, a study was conducted within four Frasnian-Famennian platform carbonate sections from Germany, France and Morocco. The study includes along-section magnetic susceptibility and carbonate content measurements complemented by analyses of magnetic hysteresis parameters, inorganic geochemistry and clay mineralogy. Our results show that the magnetic susceptibility evolution is dominantly controlled by the variations in the concentration of low-coercivity ferromagnetic magnetite grains and, to a lesser extent, of paramagnetic clays. In more detail, hysteresis ratios suggest the coexistence of two magnetite populations with significantly different grain size: (1) a dominantly coarse-grained detrital fraction including a mixture of multi-domain and single-domain particles (2) an authigenic fine-grained fraction composed of a mixture of single-domain and superparamagnetic particles. Despite a diagenetic imprint on the clay assemblages, no relationship is established between magnetic susceptibility and illite crystallinity, therefore discarding a noticeable distortion of primary within-section magnetic susceptibility evolution. The overall inherited character of the magnetic susceptibility fluctuations is corroborated by a significant correlation of magnetic susceptibility with terrigenous proxies (Zr, Th). The poorer correlation of magnetic susceptibility with the Fe content is consistent with the existence of a very fine-grained authigenic magnetite component that possibly induces a global magnetic susceptibility increase at the section scale, but no distortion of the within-section evolution. The magnetic susceptibility curves presented here provide a general record of climate-driven detrital influx and carbonate productivity through Frasnian-Lower Famennian times.

  14. Paleoenvironmental reconstructions in the Baltic Sea and Iberian margin : Assessment of GDGTs and long-chain alkenones in Holocene sedimentary records

    NARCIS (Netherlands)

    Warden, L.A.

    2017-01-01

    Increasing our knowledge about the global climate system will help society to mitigate anthropogenically induced global climate change and its impacts on the environment. Information on past climates from before the instrumental data era comes from proxies (i.e. marine and lake sediments, corals,

  15. Compound-specific C- and H-isotope compositions of enclosed organic matter in carbonate rocks: Implications for source identification of sedimentary organic matter and paleoenvironmental reconstruction

    Energy Technology Data Exchange (ETDEWEB)

    Xiong Yongqiang [State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640 (China)], E-mail: xiongyq@gig.ac.cn; Wang Yanmei; Wang Yongquan; Xu Shiping [State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640 (China)

    2007-11-15

    The Bohai Bay Basin is one of the most important oil-producing provinces in China. Molecular organic geochemical characteristics of Lower Paleozoic source rocks in this area have been investigated by analyzing chemical and isotopic compositions of solvent extracts and acid-released organic matter from the Lower Paleozoic carbonate rocks in the Jiyang Sub-basin of the Bohai Bay Basin. The results indicate that enclosed organic matter in carbonate rocks has not been recognizably altered by post-depositional processes. Two end-member compositions are suggested for early organic matter trapped in the Lower Paleozoic carbonate rocks: (1) a source dominated by aquatic organisms and deposited in a relatively deep marine environment and (2) a relatively high saline, evaporative marine depositional environment. In contrast, chemical and isotopic compositions of solvent extracts from these Lower Paleozoic carbonate rocks are relatively complicated, not only inheriting original characteristics of their precursors, but also overprinted by various post-depositional alterations, such as thermal maturation, biodegradation and mixing. Therefore, the integration of both organic matter characteristics can provide more useful information on the origin of organic matter present in carbonate rocks and the environments of their deposition.

  16. Chemical composition of modern and fossil hippopotamid teeth and implications for paleoenvironmental reconstructions and enamel formation - Part 2: Alkaline earth elements as tracers of watershed hydrochemistry and provenance

    Science.gov (United States)

    Brügmann, G.; Krause, J.; Brachert, T. C.; Stoll, B.; Weis, U.; Kullmer, O.; Ssemmanda, I.; Mertz, D. F.

    2012-11-01

    This study demonstrates that alkaline earth elements in enamel of hippopotamids, in particular Ba and Sr, are tracers for water provenance and hydrochemistry in terrestrial settings. The studied specimens are permanent premolar and molar teeth found in modern and fossil lacustrine sediments of the Western Branch of the East African Rift system (Lake Kikorongo, Lake Albert, and Lake Malawi) and from modern fluvial environments of the Nile River. Concentrations in enamel vary by two orders of magnitude for Ba (120-9336 μg g-1) as well as for Sr (9-2150 μg g-1). The variations are partially induced during post-mortem alteration and during amelogenesis, but the major contribution originates ultimately from the variable water chemistry in the habitats of the hippopotamids which is controlled by the lithologies and weathering processes in the watershed areas. Amelogenesis causes a distinct distribution of MgO, Ba and Sr in modern and fossil enamel, in that element concentrations increase along profiles from the outer rim towards the enamel-dentin junction by a factor of 1.3-1.9. These elements are well correlated in single specimens, thus suggesting that their distribution is determined by a common, single process, which can be described by closed system Rayleigh crystallization of bioapatite in vivo. Enamel from most hippopotamid specimens has Sr/Ca and Ba/Ca which are typical for herbivores. However, Ba/Sr ranges from 0.1 to 3 and varies on spatial and temporal scales. Thus, Sr concentrations and Ba/Sr in enamel differentiate between habitats having basaltic mantle rocks or Archean crustal rocks as the ultimate sources of Sr and Ba. This provenance signal is modulated by climate change. In Miocene to Pleistocene enamel from the Lake Albert region, Ba/Sr decreases systematically with time from 2 to 0.5. This trend can be correlated with changes in climate from humid to arid, in vegetation from C3 to C4 biomass as well as with increasing evaporation of the lake water. The most plausible explanation is that Ba mobility decreased with increasing aridification due to preferential deposition with clay and Fe-oxide-hydroxide or barite on the watershed of Lake Albert.

  17. Paleoenvironmental analyses of an organic deposit from an erosional landscape remnant, Arctic Coastal Plain of Alaska

    Energy Technology Data Exchange (ETDEWEB)

    Eisner, W R; Bockheim, J G; Hinkel, K M; Brown, T A; Nelson, F E; Peterson, K M; Jones, B M

    2005-01-02

    The dominant landscape process on the Arctic Coastal Plain of northern Alaska is the formation and drainage of thaw lakes. Lakes and drained thaw lake basins account for approximately 75% of the modern surface expression of the Barrow Peninsula. The thaw lake cycle usually obliterates lacustrine or peat sediments from previous cycles which could otherwise be used for paleoecological reconstruction of long-term landscape and vegetation changes. Several possible erosional remnants of a former topographic surface that predates the formation of the thaw lakes have been tentatively identified. These remnants are characterized by a higher elevation, a thick organic layer with very high ground ice content in the upper permafrost, and a plant community somewhat atypical of the region. Ten soil cores were collected from one site, and one core was intensively sampled for soil organic carbon content, pollen analysis, and {sup 14}C dating. The lowest level of the organic sediments represents the earliest phase of plant growth and dates to ca. 9000 cal BP. Palynological evidence indicates the presence of mesic shrub tundra (including sedge, birch, willow, and heath vegetation); and microfossil indicators point to wetter eutrophic conditions during this period. Carbon accumulation was rapid due to high net primary productivity in a relatively nutrient-rich environment. These results are interpreted as the local response to ameliorating climate during the early Holocene. The middle Holocene portion of the record contains an unconformity, indicating that between 8200 and 4200 cal BP sediments were eroded from the site, presumably in response to wind activity during a drier period centered around 4500 cal BP. The modern vegetation community of the erosional remnant was established after 4200 cal BP, and peat growth resumed. During the late Holocene, carbon accumulation rates were greatly reduced in response to the combined effects of declining productivity associated with climatic

  18. In the Land of the Sky: Recent Paleoenvironmental Research From Coastal Oaxaca, Mexico

    Science.gov (United States)

    Goman, M. F.; Joyce, A. A.; Mueller, R. G.

    2005-05-01

    The Lower Río Verde Valley of Oaxaca has had a long and complex cultural history in part shaped by significant landscape change that ocurred 2300 years ago, when the Río Verde river changed morphology from a meandering to a braided form. These changes were precipitated by anthropogenic landuse impacts in the highland valleys of Oaxaca over 125 linear km to the north. While the lower valley's geomorphic history is well studied, little is known of its paleoecology. In order to reconstruct the history of vegetation, climate, and associated land use change, sediment cores were raised from several sites throughout the region. We present stratigraphical, palynological, and charcoal data from three sites in the region. The lower drainage basin consists entirely of the Verde's coastal valley. The climate of the lower Río Verde Valley is hot and humid with mean annual rainfall of 1000 mm to 2000 mm and average temperatures range from 25°C to 28°C. We discuss the pollen and stratigraphic record from Laguna Pastoría which is a brackish estuary protected from the Pacific Ocean by a roughly east-west trending bay barrier. The bay barrier is about 500 m wide and 2 to 4 m high. Low scrub vegetation (cacti, thorny bushes, small trees and palms) grow on the barrier. The lagoon itself is approximately 9 km long and varies in depth with a 3-4 m maximum. Tides are microtidal (1 m). The lagoon supports a diverse array of mangroves (Rhizophora mangle, Laguncularia racemosa, Conocarpus erectus and Avicennia germinans). Two sediment cores were raised from the lagoon (LP1 and LP2) and provide a record of hurricane strikes and possible changes in the frequency of El Niño's. The LP1 core covers approximately the last 5000 yrs. Preliminary pollen analysis indicates that pollen is in excellent condition and is diverse (>60 taxa). Zea mays pollen was identified from sediments dating to the early Formative period (~ 3600 yr ago). The charcoal records analyzed from 2 paleomeanders of the

  19. Preliminary mineralogical and paleoenvironmental study of the diatomites from Adamclisi, South Dobrogea, Romania

    Science.gov (United States)

    Dumitras, Delia-Georgeta; Sebe-Radoi, Oana-Gabriela; Marincea, Stefan; Costea, Constantin

    2017-04-01

    brackish species such as Diploneis ovalis (up to 5 %). On the top, the marine species (up to 70%) also prevail over the marine-brackish and brackish (e.g., Rhopalodia gibberula) ones (up to 25 %). On the middle of the profile, a biozona with more brackish species can be identified. In order to reconstruct past conditions we can identify and measure seasonal variations in climate for the Eastern Paratethys area and evaluate relationships between inferred changes in the aquatic and terrestrial environments. The monotone development of diatom communities was controlled by stable water level (stratified and relatively stagnant water periods) in contrast with blooms periods (with variable salinity) linked to possible upwelling currents provoked by freshwater inputs. Considerable amount of fresh water probably come into the basin as an imput carried on by the river streams.

  20. Landscapes of human evolution: models and methods of tectonic geomorphology and the reconstruction of hominin landscapes.

    Science.gov (United States)

    Bailey, Geoffrey N; Reynolds, Sally C; King, Geoffrey C P

    2011-03-01

    This paper examines the relationship between complex and tectonically active landscapes and patterns of human evolution. We show how active tectonics can produce dynamic landscapes with geomorphological and topographic features that may be critical to long-term patterns of hominin land use, but which are not typically addressed in landscape reconstructions based on existing geological and paleoenvironmental principles. We describe methods of representing topography at a range of scales using measures of roughness based on digital elevation data, and combine the resulting maps with satellite imagery and ground observations to reconstruct features of the wider landscape as they existed at the time of hominin occupation and activity. We apply these methods to sites in South Africa, where relatively stable topography facilitates reconstruction. We demonstrate the presence of previously unrecognized tectonic effects and their implications for the interpretation of hominin habitats and land use. In parts of the East African Rift, reconstruction is more difficult because of dramatic changes since the time of hominin occupation, while fossils are often found in places where activity has now almost ceased. However, we show that original, dynamic landscape features can be assessed by analogy with parts of the Rift that are currently active and indicate how this approach can complement other sources of information to add new insights and pose new questions for future investigation of hominin land use and habitats. Copyright © 2010 Elsevier Ltd. All rights reserved.

  1. Septal graft in laryngeal reconstruction

    International Nuclear Information System (INIS)

    Bahannan, Abdulrahman; Slavicek, A.; Taudy, M.; Chovanec, M.

    2006-01-01

    A 62-year-old woman presented with symptoms of dyspnea. Ultrasonography and computed tomography examinations revealed mass extending from the cricoid cartilage to the left lobe of thyroid gland and thyroid cartilage. Cytology revealed possibility of cartilaginous origin, which was proven to be chondrosarcoma (Grade 1) from the biopsy specimen obtained during panendosopy. She underwent one stage radical resection and immediate reconstruction of laryngeal skeleton defect by mucocartilaginous graft from the nasal septum. Her postoperative course was optimal with preservation of the laryngeal functions. Twenty-eight months postoperatively, she had to undergo total laryngectomy as a salvage procedure for the advanced local recurrence. We report on the relatively easy technique for functional reconstruction of the large laryngeal defect with the employment cartilage graft from the nasal septum. (author)

  2. PALEOENVIRONMENTAL EVOLUTION OF THE ITARARÉ GROUP (PARANÁ BASIN IN THE REGIONS OF SALTO AND ITU, EAST OF SÃO PAULO STATE, BRAZIL

    Directory of Open Access Journals (Sweden)

    Sérgio Bergamaschi

    2016-03-01

    Full Text Available Itararé Group represents the glacial record of Gondwana Continent in the intracratonic Paraná Basin, encompassing regions of Southern Brazil, Eastern Paraguay, Northeast Argentina and Northern Paraguay. Itararé Group is the thickest sedimentary package of Paraná Basin, and was deposited over 36 million years during the end of the Carboniferous and the beginning of the Permian. However, in relation to its paleoenvironmental evolution, it is generally understood that more research is necessary, in order to better understand the genesis of the Itararé Group in different places. The present work entailed mapping facies associations for the Itararé Group in the city of Salto, in São Paulo State, by identifying and classifying sedimentary facies that, in turn, were utilized to develop a paleoenvironmental evolution model. This model was based on geological mapping carried out over 125 km². Petrological and petrographic descriptions of 32 outcrops of Itararé Group also were studied. These results were compared with subsurface data obtained by Sistema de Informações de Águas Subterrâneas, Serviços Geológicos do Brasil (SIAGAS-CPRM; System Water Information Groundwater, Geological Survey of Brazil. Through lithofacies and petrographic analyses and making a comparison between five column sections, surface and subsurface data, a stratigraphic correlation model was established for the region. Through this model was possible to identify four facies associations, which, together, indicate how the paleoenvironmental evolution of the region occurred. The first three associations (A, B, C were interpreted as being formed in subaqueous environment, being related to sandy lobe systems, followed by the last association (D, pertaining to a fluvial system.

  3. Breast reconstruction - natural tissue

    Science.gov (United States)

    ... flap; TRAM; Latissimus muscle flap with a breast implant; DIEP flap; DIEAP flap; Gluteal free flap; Transverse upper gracilis flap; TUG; Mastectomy - breast reconstruction with natural tissue; Breast cancer - breast reconstruction with natural tissue

  4. Breast reconstruction after mastectomy

    Directory of Open Access Journals (Sweden)

    Daniel eSchmauss

    2016-01-01

    Full Text Available Breast cancer is the leading cause of cancer death in women worldwide. Its surgical approach has become less and less mutilating in the last decades. However, the overall number of breast reconstructions has significantly increased lately. Nowadays breast reconstruction should be individualized at its best, first of all taking into consideration oncological aspects of the tumor, neo-/adjuvant treatment and genetic predisposition, but also its timing (immediate versus delayed breast reconstruction, as well as the patient’s condition and wish. This article gives an overview over the various possibilities of breast reconstruction, including implant- and expander-based reconstruction, flap-based reconstruction (vascularized autologous tissue, the combination of implant and flap, reconstruction using non-vascularized autologous fat, as well as refinement surgery after breast reconstruction.

  5. Differential evolution of a CXCR4-using HIV-1 strain in CCR5wt/wt and CCR5∆32/∆32 hosts revealed by longitudinal deep sequencing and phylogenetic reconstruction.

    Science.gov (United States)

    Le, Anh Q; Taylor, Jeremy; Dong, Winnie; McCloskey, Rosemary; Woods, Conan; Danroth, Ryan; Hayashi, Kanna; Milloy, M-J; Poon, Art F Y; Brumme, Zabrina L

    2015-12-03

    Rare individuals homozygous for a naturally-occurring 32 base pair deletion in the CCR5 gene (CCR5∆32/∆32) are resistant to infection by CCR5-using ("R5") HIV-1 strains but remain susceptible to less common CXCR4-using ("X4") strains. The evolutionary dynamics of X4 infections however, remain incompletely understood. We identified two individuals, one CCR5wt/wt and one CCR5∆32/∆32, within the Vancouver Injection Drug Users Study who were infected with a genetically similar X4 HIV-1 strain. While early-stage plasma viral loads were comparable in the two individuals (~4.5-5 log10 HIV-1 RNA copies/ml), CD4 counts in the CCR5wt/wt individual reached a nadir of 250 cells/mm(3) in the CCR5∆32/∆32 individual. Ancestral phylogenetic reconstructions using longitudinal envelope-V3 deep sequences suggested that both individuals were infected by a single transmitted/founder (T/F) X4 virus that differed at only one V3 site (codon 24). While substantial within-host HIV-1 V3 diversification was observed in plasma and PBMC in both individuals, the CCR5wt/wt individual's HIV-1 population gradually reverted from 100% X4 to ~60% R5 over ~4 years whereas the CCR5∆32/∆32 individual's remained consistently X4. Our observations illuminate early dynamics of X4 HIV-1 infections and underscore the influence of CCR5 genotype on HIV-1 V3 evolution.

  6. A paleoenvironmental study of subsurface Quaternary sediments at Wainuiomata, Wellington, New Zealand, and tectonic implications

    Energy Technology Data Exchange (ETDEWEB)

    Begg, J G; Mildenhall, D C; Lyon, G L; Stephenson, W R; Funnell, R H; Van Dissen, R J; Bannister, S; Brown, L J [Institute of Geological and Nuclear Sciences Ltd., Lower Hutt (New Zealand); Pillans, B; Harper, M A [Research School of Earth Sciences, Victoria University of Wellington, Wellington (New Zealand); Whitton, J [Manaaki Whenua - Landcare Research, Lower Hutt, (New Zealand)

    1994-12-31

    A stratigraphic drillhole (WS-1) sited on the floor of Wainuiomata Valley near Lower Hutt, revealed a 61.6 m thick Quaternary sequence overlying Torlesse Supergroup greywacke sandstone and argillite. The Quaternary sediments consist of three sequences separated by disconformities. The lower sequence, 10.7 m thick (61.6-50.9 m), consists of fluvial sediments of probable early Quaternary age. The middle sequence, about 48.3 m in thickness (50.9-c. 2.6 m), spans most of the Last Glaciation. Fluvial/overbnak (50.9-42.0 m), floodplain/swamp (42.9-34.5 m), and fluvial (34.5-31.3 m) sediments overlie the disconformity at 50.9 m. Conformably overlying these sediments are swamp and lacustrine deposits between 31.3 and 4.1 m. Diatoms and algal spores and coenobia show the existence of an extensive lake during much of this sequence, from 25.6 to 4.0 m. at the peak of its development, at a drillhole depth of c. 23 m, the lake was >10 m deep and had a high algal biomass. Kawakawa Tephra (22 600 yr b.p.) occurs near the top of the middle sequence at 4.1 m depth. The upper sequence, of Holocene-Recent age, is <2.6 m thick, including .06 m of fill. The existence of sediments of the lower sequence of at least Castlecliffian age (early Pleistocene) uncomformably overlying basement greywacke provides a minimum age for the K-surface in the area. The Last Glacial sediments show evidence of ponfing, which may be a result of one factor or a more of the following: ponding behind an aggradational terrace of the Wainuiomata River; landslide blockage of the Black Stream drainage near its confluence with Wainuiomata River; and tectonic deformation. Progressive tectonic deformation since the start of the Last Glaciation is considered the most likely dominant factor. This has resulted in the elevation of greywacke basement near the junction of Black Stream and Wainuiomata River. The nature of the deformation - faulting, tilting, and/or folding - has not been established. 38 refs,6 figs,2 tables.

  7. A paleoenvironmental study of subsurface Quaternary sediments at Wainuiomata, Wellington, New Zealand, and tectonic implications

    International Nuclear Information System (INIS)

    Begg, J.G.; Mildenhall, D.C.; Lyon, G.L.; Stephenson, W.R.; Funnell, R.H.; Van Dissen, R.J.; Bannister, S.; Brown, L.J.; Pillans, B.; Harper, M.A.; Whitton, J.

    1993-01-01

    A stratigraphic drillhole (WS-1) sited on the floor of Wainuiomata Valley near Lower Hutt, revealed a 61.6 m thick Quaternary sequence overlying Torlesse Supergroup greywacke sandstone and argillite. The Quaternary sediments consist of three sequences separated by disconformities. The lower sequence, 10.7 m thick (61.6-50.9 m), consists of fluvial sediments of probable early Quaternary age. The middle sequence, about 48.3 m in thickness (50.9-c. 2.6 m), spans most of the Last Glaciation. Fluvial/overbnak (50.9-42.0 m), floodplain/swamp (42.9-34.5 m), and fluvial (34.5-31.3 m) sediments overlie the disconformity at 50.9 m. Conformably overlying these sediments are swamp and lacustrine deposits between 31.3 and 4.1 m. Diatoms and algal spores and coenobia show the existence of an extensive lake during much of this sequence, from 25.6 to 4.0 m. at the peak of its development, at a drillhole depth of c. 23 m, the lake was >10 m deep and had a high algal biomass. Kawakawa Tephra (22 600 yr b.p.) occurs near the top of the middle sequence at 4.1 m depth. The upper sequence, of Holocene-Recent age, is <2.6 m thick, including .06 m of fill. The existence of sediments of the lower sequence of at least Castlecliffian age (early Pleistocene) uncomformably overlying basement greywacke provides a minimum age for the K-surface in the area. The Last Glacial sediments show evidence of ponfing, which may be a result of one factor or a combination of the following: ponding behind an aggradational terrace of the Wainuiomata River; landslide blockage of the Black Stream drainage near its confluence with Wainuiomata River; and tectonic deformation. Progressive tectonic deformation since about the start of the Last Glaciation is considered the most likely dominant factor. This has resulted in the elevation of greywacke basement near the junction of Black Stream and Wainuiomata River. The nature of the deformation - faulting, tilting, and/or folding - has not been established. (authors

  8. Paleoenvironmental conditions and strontium isotope stratigraphy in the Paleogene Gafsa Basin (Tunisia) deduced from geochemical analyses of phosphatic fossils

    Science.gov (United States)

    Kocsis, László; Ounis, Anouar; Chaabani, Fredj; Salah, Neili Mohamed

    2013-06-01

    Fossil shark teeth and coprolites from three major phosphorite occurrences in the Gafsa Basin (southwestern Tunisia) were investigated for their geochemical compositions to improve local stratigraphy and to better assess paleoenvironmental conditions. 87Sr/86Sr isotope ratios of shark teeth from the Early Maastrichtian El Haria Formation and from the Early Eocene Métlaoui s.s. Formation yielded Sr isotope ages of 68 ± 1 and 47.9 ± 1.3 Ma, respectively, which accord with the expected stratigraphic positions of these sediments. Conversely, shark teeth from the Paleocene-Eocene Chouabine Formation have large variation in Sr isotope ratios even within individual layers. After statistical treatment and then elimination of certain outlier samples, three age-models are proposed and discussed. The most reasonable solution includes three subsequent Sr ages of 61.8 ± 2.2 Ma, 57.2 ± 1.8 and 54.6 ± 1.6 for layer IX, layers VIII-V and layers IV-0, respectively. Three scenarios are discussed for explanation of the presence of the outliers: (1) diagenesis, (2) re-working and (3) locally controlled seawater Sr isotope ratio. The most plausible account for the higher 87Sr/86Sr ratios relative to the global ocean in some fossils is enhanced intrabasinal re-working due to low sea level. Conversely, the sample with lower 87Sr/86Sr than the global seawater may link to diagenesis or to seawater influenced by weathering of Late Cretaceous marine carbonates, which latter is supported by model calculation as well. The ɛNd values of these fossils are very similar to those reported for Paleogene and Late Cretaceous Tethyan seawater and are compatible with the above interpretations. The relatively low oxygen isotope values in shark teeth from the topmost phosphate bed of the Chouabine Formation, together with the Sr isotope results, point toward recovering better connections with the open sea. These δ18O data reflect elevated ambient temperature, which may link to the Early Eocene

  9. Sensation Following Immediate Breast Reconstruction with Implants.

    Science.gov (United States)

    Lagergren, Jakob; Wickman, Marie; Hansson, Per

    2010-01-01

    Sensation is a neglected aspect of the outcome of breast reconstructions with implants. The aim of this prospective study was to evaluate the cutaneous somatosensory status in breasts following mastectomy and immediate reconstruction with permanent adjustable prostheses and to analyze the patients' subjective experience of the sensation. Twenty-four consecutive patients diagnosed with invasive or in situ breast carcinoma were examined preoperatively and 2 years after mastectomy and reconstruction, for assessment of perception thresholds for touch, cold, warmth, and heat pain above and below the areola. Von Frey filaments and a Peltier element-based thermode were used. The patients completed a questionnaire concerning their experienced sensation in the reconstructed breast. Using quantitative somato-sensory testing, the sensation to all the examined modalities was significantly impaired compared to preoperatively. Most affected was the area above the areola. Patients given postoperative radiotherapy (n = 9) did not differ from those without radiotherapy (n = 15) regarding any of the modalities. All patients reported reduced sensation in the reconstructed breast compared to that preoperatively. Twenty-three patients stated that the reconstructed breast felt different from the other breast; nevertheless 16 reported that the reconstructed breast felt like a real breast. The study revealed sensation impairment following mastectomy and immediate reconstruction with implants. Patients should be informed about this effect preoperatively to allow adequate expectations regarding the sensation outcome. However, two-thirds of the study patients considered that the reconstructed breast felt like a real breast, which must be one of the main purposes of a breast reconstruction.

  10. Image Reconstruction. Chapter 13

    Energy Technology Data Exchange (ETDEWEB)

    Nuyts, J. [Department of Nuclear Medicine and Medical Imaging Research Center, Katholieke Universiteit Leuven, Leuven (Belgium); Matej, S. [Medical Image Processing Group, Department of Radiology, University of Pennsylvania, Philadelphia, PA (United States)

    2014-12-15

    This chapter discusses how 2‑D or 3‑D images of tracer distribution can be reconstructed from a series of so-called projection images acquired with a gamma camera or a positron emission tomography (PET) system [13.1]. This is often called an ‘inverse problem’. The reconstruction is the inverse of the acquisition. The reconstruction is called an inverse problem because making software to compute the true tracer distribution from the acquired data turns out to be more difficult than the ‘forward’ direction, i.e. making software to simulate the acquisition. There are basically two approaches to image reconstruction: analytical reconstruction and iterative reconstruction. The analytical approach is based on mathematical inversion, yielding efficient, non-iterative reconstruction algorithms. In the iterative approach, the reconstruction problem is reduced to computing a finite number of image values from a finite number of measurements. That simplification enables the use of iterative instead of mathematical inversion. Iterative inversion tends to require more computer power, but it can cope with more complex (and hopefully more accurate) models of the acquisition process.

  11. Update on orbital reconstruction.

    Science.gov (United States)

    Chen, Chien-Tzung; Chen, Yu-Ray

    2010-08-01

    Orbital trauma is common and frequently complicated by ocular injuries. The recent literature on orbital fracture is analyzed with emphasis on epidemiological data assessment, surgical timing, method of approach and reconstruction materials. Computed tomographic (CT) scan has become a routine evaluation tool for orbital trauma, and mobile CT can be applied intraoperatively if necessary. Concomitant serious ocular injury should be carefully evaluated preoperatively. Patients presenting with nonresolving oculocardiac reflex, 'white-eyed' blowout fracture, or diplopia with a positive forced duction test and CT evidence of orbital tissue entrapment require early surgical repair. Otherwise, enophthalmos can be corrected by late surgery with a similar outcome to early surgery. The use of an endoscope-assisted approach for orbital reconstruction continues to grow, offering an alternative method. Advances in alloplastic materials have improved surgical outcome and shortened operating time. In this review of modern orbital reconstruction, several controversial issues such as surgical indication, surgical timing, method of approach and choice of reconstruction material are discussed. Preoperative fine-cut CT image and thorough ophthalmologic examination are key elements to determine surgical indications. The choice of surgical approach and reconstruction materials much depends on the surgeon's experience and the reconstruction area. Prefabricated alloplastic implants together with image software and stereolithographic models are significant advances that help to more accurately reconstruct the traumatized orbit. The recent evolution of orbit reconstruction improves functional and aesthetic results and minimizes surgical complications.

  12. Permutationally invariant state reconstruction

    DEFF Research Database (Denmark)

    Moroder, Tobias; Hyllus, Philipp; Tóth, Géza

    2012-01-01

    Feasible tomography schemes for large particle numbers must possess, besides an appropriate data acquisition protocol, an efficient way to reconstruct the density operator from the observed finite data set. Since state reconstruction typically requires the solution of a nonlinear large-scale opti...... optimization, which has clear advantages regarding speed, control and accuracy in comparison to commonly employed numerical routines. First prototype implementations easily allow reconstruction of a state of 20 qubits in a few minutes on a standard computer.......-scale optimization problem, this is a major challenge in the design of scalable tomography schemes. Here we present an efficient state reconstruction scheme for permutationally invariant quantum state tomography. It works for all common state-of-the-art reconstruction principles, including, in particular, maximum...

  13. Equal and opposite reactions. Paleoenvironmental evolution and historical change around the Sant’Ilario and Benedetto monastery (Dogaletto di Mira

    Directory of Open Access Journals (Sweden)

    Elisa Corrò

    2015-10-01

    Full Text Available This paper aims to reenact the geological dynamics in action from the Middle Ages to these days from the point of views of Saint Ilario abbey and its surrounding area. The presence of the monastery, allowed us to recover a huge amount of information, concerning changes of landscape, rivers and settlements. Furthermore, it attempts a reconstruction of the site, today almost unrecognizable from the other cultivated fields.

  14. Shredded banknotes reconstruction using AKAZE points.

    Science.gov (United States)

    Nabiyev, Vasif V; Yılmaz, Seçkin; Günay, Asuman; Muzaffer, Gül; Ulutaş, Güzin

    2017-09-01

    Shredded banknote reconstruction is a recent topic and can be viewed as solving large-scale jigsaw puzzles. Also, problems such as reconstruction of fragmented documents, photographs and historical artefacts are closely related with this topic. The high computational complexity of these problems increases the need for the development of new methods Reconstruction of shredded banknotes consists of three main stages. (1) Matching fragments with a reference banknote. (2) Aligning the fragments by rotating at certain angles. (3) Assembling the fragments. The existing methods can successfully applied to synthetic banknote fragments which are created in computer environment. But when real banknote reconstruction problem is considered, different sub problems arise and make the existing methods inadequate. In this study, a keypoint based method, named AKAZE, was used to make the matching process effective. This is the first study that uses the AKAZE method in the reconstruction of shredded banknotes. A new method for fragment alignment has also been proposed. In this method, the convex hulls that contain all true matched AKAZE keypoints were found on reference banknote and fragments. The orientations of fragments were estimated accurately by comparing these convex polygons. Also, a new criterion was developed to reveal the success rates of reconstructed banknotes. In addition, two different data sets including real and synthetic banknote fragments of different countries were created to test the success of proposed method. Copyright © 2017 Elsevier B.V. All rights reserved.

  15. Hybrid spectral CT reconstruction.

    Directory of Open Access Journals (Sweden)

    Darin P Clark

    Full Text Available Current photon counting x-ray detector (PCD technology faces limitations associated with spectral fidelity and photon starvation. One strategy for addressing these limitations is to supplement PCD data with high-resolution, low-noise data acquired with an energy-integrating detector (EID. In this work, we propose an iterative, hybrid reconstruction technique which combines the spectral properties of PCD data with the resolution and signal-to-noise characteristics of EID data. Our hybrid reconstruction technique is based on an algebraic model of data fidelity which substitutes the EID data into the data fidelity term associated with the PCD reconstruction, resulting in a joint reconstruction problem. Within the split Bregman framework, these data fidelity constraints are minimized subject to additional constraints on spectral rank and on joint intensity-gradient sparsity measured between the reconstructions of the EID and PCD data. Following a derivation of the proposed technique, we apply it to the reconstruction of a digital phantom which contains realistic concentrations of iodine, barium, and calcium encountered in small-animal micro-CT. The results of this experiment suggest reliable separation and detection of iodine at concentrations ≥ 5 mg/ml and barium at concentrations ≥ 10 mg/ml in 2-mm features for EID and PCD data reconstructed with inherent spatial resolutions of 176 μm and 254 μm, respectively (point spread function, FWHM. Furthermore, hybrid reconstruction is demonstrated to enhance spatial resolution within material decomposition results and to improve low-contrast detectability by as much as 2.6 times relative to reconstruction with PCD data only. The parameters of the simulation experiment are based on an in vivo micro-CT experiment conducted in a mouse model of soft-tissue sarcoma. Material decomposition results produced from this in vivo data demonstrate the feasibility of distinguishing two K-edge contrast agents with

  16. Hybrid spectral CT reconstruction

    Science.gov (United States)

    Clark, Darin P.

    2017-01-01

    Current photon counting x-ray detector (PCD) technology faces limitations associated with spectral fidelity and photon starvation. One strategy for addressing these limitations is to supplement PCD data with high-resolution, low-noise data acquired with an energy-integrating detector (EID). In this work, we propose an iterative, hybrid reconstruction technique which combines the spectral properties of PCD data with the resolution and signal-to-noise characteristics of EID data. Our hybrid reconstruction technique is based on an algebraic model of data fidelity which substitutes the EID data into the data fidelity term associated with the PCD reconstruction, resulting in a joint reconstruction problem. Within the split Bregman framework, these data fidelity constraints are minimized subject to additional constraints on spectral rank and on joint intensity-gradient sparsity measured between the reconstructions of the EID and PCD data. Following a derivation of the proposed technique, we apply it to the reconstruction of a digital phantom which contains realistic concentrations of iodine, barium, and calcium encountered in small-animal micro-CT. The results of this experiment suggest reliable separation and detection of iodine at concentrations ≥ 5 mg/ml and barium at concentrations ≥ 10 mg/ml in 2-mm features for EID and PCD data reconstructed with inherent spatial resolutions of 176 μm and 254 μm, respectively (point spread function, FWHM). Furthermore, hybrid reconstruction is demonstrated to enhance spatial resolution within material decomposition results and to improve low-contrast detectability by as much as 2.6 times relative to reconstruction with PCD data only. The parameters of the simulation experiment are based on an in vivo micro-CT experiment conducted in a mouse model of soft-tissue sarcoma. Material decomposition results produced from this in vivo data demonstrate the feasibility of distinguishing two K-edge contrast agents with a spectral

  17. Mathematics revealed

    CERN Document Server

    Berman, Elizabeth

    1979-01-01

    Mathematics Revealed focuses on the principles, processes, operations, and exercises in mathematics.The book first offers information on whole numbers, fractions, and decimals and percents. Discussions focus on measuring length, percent, decimals, numbers as products, addition and subtraction of fractions, mixed numbers and ratios, division of fractions, addition, subtraction, multiplication, and division. The text then examines positive and negative numbers and powers and computation. Topics include division and averages, multiplication, ratios, and measurements, scientific notation and estim

  18. Overview of image reconstruction

    International Nuclear Information System (INIS)

    Marr, R.B.

    1980-04-01

    Image reconstruction (or computerized tomography, etc.) is any process whereby a function, f, on R/sup n/ is estimated from empirical data pertaining to its integrals, ∫f(x) dx, for some collection of hyperplanes of dimension k < n. The paper begins with background information on how image reconstruction problems have arisen in practice, and describes some of the application areas of past or current interest; these include radioastronomy, optics, radiology and nuclear medicine, electron microscopy, acoustical imaging, geophysical tomography, nondestructive testing, and NMR zeugmatography. Then the various reconstruction algorithms are discussed in five classes: summation, or simple back-projection; convolution, or filtered back-projection; Fourier and other functional transforms; orthogonal function series expansion; and iterative methods. Certain more technical mathematical aspects of image reconstruction are considered from the standpoint of uniqueness, consistency, and stability of solution. The paper concludes by presenting certain open problems. 73 references

  19. The evolving breast reconstruction

    DEFF Research Database (Denmark)

    Thomsen, Jørn Bo; Gunnarsson, Gudjon Leifur

    2014-01-01

    The aim of this editorial is to give an update on the use of the propeller thoracodorsal artery perforator flap (TAP/TDAP-flap) within the field of breast reconstruction. The TAP-flap can be dissected by a combined use of a monopolar cautery and a scalpel. Microsurgical instruments are generally...... not needed. The propeller TAP-flap can be designed in different ways, three of these have been published: (I) an oblique upwards design; (II) a horizontal design; (III) an oblique downward design. The latissimus dorsi-flap is a good and reliable option for breast reconstruction, but has been criticized...... for oncoplastic and reconstructive breast surgery and will certainly become an invaluable addition to breast reconstructive methods....

  20. Forging Provincial Reconstruction Teams

    National Research Council Canada - National Science Library

    Honore, Russel L; Boslego, David V

    2007-01-01

    The Provincial Reconstruction Team (PRT) training mission completed by First U.S. Army in April 2006 was a joint Service effort to meet a requirement from the combatant commander to support goals in Afghanistan...

  1. Breast Reconstruction with Implants

    Science.gov (United States)

    ... your surgical options and discuss the advantages and disadvantages of implant-based reconstruction, and may show you ... Policy Notice of Privacy Practices Notice of Nondiscrimination Advertising Mayo Clinic is a not-for-profit organization ...

  2. Reconstruction of a semi-arid late Pleistocene paleocatena from the Lake Victoria region, Kenya

    Science.gov (United States)

    Beverly, Emily J.; Driese, Steven G.; Peppe, Daniel J.; Arellano, L. Nicole; Blegen, Nick; Faith, J. Tyler; Tryon, Christian A.

    2015-11-01

    The effect of changing environment on the evolution of Homo sapiens is heavily debated, but few data are available from equatorial Africa prior to the last glacial maximum. The Karungu deposits on the northeast coast of Lake Victoria are ideal for paleoenvironmental reconstructions and are best studied at the Kisaaka site near Karunga in Kenya (94 to > 33 ka) where paleosols, fluvial deposits, tufa, and volcaniclastic deposits (tuffs) are exposed over a 2 km transect. Three well-exposed and laterally continuous paleosols with intercalated tuffs allow for reconstruction of a succession of paleocatenas. The oldest paleosol is a smectitic paleo-Vertisol with saline and sodic properties. Higher in the section, the paleosols are tuffaceous paleo-Inceptisols with Alfisol-like soil characteristics (illuviated clay). Mean annual precipitation (MAP) proxies indicate little change through time, with an average of 764 ± 108 mm yr- 1 for Vertisols (CALMAG) and 813 ± 182 to 963 ± 182 mm yr- 1 for all paleosols (CIA-K). Field observations and MAP proxies suggest that Karungu was significantly drier than today, consistent with the associated faunal assemblage, and likely resulted in a significantly smaller Lake Victoria during the late Pleistocene. Rainfall reduction and associated grassland expansion may have facilitated human and faunal dispersals across equatorial East Africa.

  3. REVEAL: Reconstruction, Enhancement, Visualization, and Ergonomic Assessment for Laparoscopy

    Science.gov (United States)

    2008-08-01

    2007) Ergonomic risk of assisting in minimally invasive surgery, Annual conference of SAGES 2008 Park AE, Meenaghan N, Lee TH, Seagull FJ, Lee G...of NOTES techniques: a study of physical and mental workload, body movement and posture Adrian Park, Gyusung Lee, Carlos Godinez, F Jacob Seagull

  4. High-resolution paleoenvironmental context for human occupations during the Middle Pleistocene in Europe (MIS 11, Germany)

    Science.gov (United States)

    Rivals, Florent; Ziegler, Reinhard

    2018-05-01

    High-resolution paleoecological proxies, such as stable isotopes or tooth microwear in large mammals, are often used for their potential to deliver information about the paleodietary traits of individuals and populations at the time of death. Such proxies are of interest in high resolution sites because they provide accurate data regarding the diet of large herbivores as well as the habitats that were available at the time of formation of the site, and by inference can detect seasonality in the formation of the assemblages. The integration of two techniques, tooth mesowear and microwear, applied to Middle Pleistocene assemblages of large herbivores from Steinheim and Heppenloch did not indicate seasonality at any of the two sites, most likely due to low resolution and time averaging of the dietary signal. However, the combination of the two proxies was highly informative for reconstructing the paleodiets of the large herbivores. The two paleodietary proxies provided consistent results that permitted us to propose a reconstruction of the paleodiets and habitats available at each site.

  5. Reconstruction Algorithms in Undersampled AFM Imaging

    DEFF Research Database (Denmark)

    Arildsen, Thomas; Oxvig, Christian Schou; Pedersen, Patrick Steffen

    2016-01-01

    This paper provides a study of spatial undersampling in atomic force microscopy (AFM) imaging followed by different image reconstruction techniques based on sparse approximation as well as interpolation. The main reasons for using undersampling is that it reduces the path length and thereby...... the scanning time as well as the amount of interaction between the AFM probe and the specimen. It can easily be applied on conventional AFM hardware. Due to undersampling, it is then necessary to further process the acquired image in order to reconstruct an approximation of the image. Based on real AFM cell...... images, our simulations reveal that using a simple raster scanning pattern in combination with conventional image interpolation performs very well. Moreover, this combination enables a reduction by a factor 10 of the scanning time while retaining an average reconstruction quality around 36 dB PSNR...

  6. Sub-annual paleoenvironmental information evaluated from intensity variations of fluorescent annual layers in a stalagmite from Ryuo-do Cave, Nagasaki Prefecture, western Japan

    Science.gov (United States)

    Sasaki, Hana; Onishi, Yuri; Ishihara, Yoshiro; Yoshimura, Kazuhisa

    2017-04-01

    Stalagmites can provide various types of paleoenvironmental information such as information on vegetation and climate changes. Fluorescent annual layers formed by humic substances (mainly fulvic acids: FA) in these stalagmites can also provide a time proxy, and a time series on precipitation. Fluorescence intensity patterns in these annual layers can be classified into symmetric, gradually increasing and gradually decreasing types. Onishi et al. (EGU2016) demonstrated the existence of these fluorescence intensity patterns in the annual layers, and their stratigraphic changes, by numerical simulations, and suggested that the patterns could provide paleoenvironmental information at a sub-annual resolution. In this study, we carried out an analysis of fluorescence intensity patterns in the annual layers of a stalagmite from Ryuo-do Cave, Nagasaki Prefecture, western Japan, and also simulated the patterns in the stalagmite, to obtain paleoenvironmental information. Fluorescence intensity patterns in the annual layers are strongly affected by annual variations in FA concentration and precipitation rates of calcite. As the result of simulations of fluorescence intensity patterns, cumulative variations and various types of pattern are reproduced. These differences are depending on time lags between the variation of the FA concentration in the drip waters, and that of the growth rate of the stalagmite. Co-precipitation models of FA are divided into the "Hiatus model" in which FA are preferentially preserved in the stalagmite when its growth rate is relatively low, and the "Partition coefficient (PC) model" in which FA concentrations in the stalagmite increase when the calcite precipitation rate is relatively high. However, various fluorescence intensity patterns in the annual layers could be formed under a combination or either of both of the models. Fluorescence intensity patterns in an annual layer in the stalagmite from Ryuo-do Cave, Nagasaki Prefecture, western Japan

  7. A Taxonomic Reduced-Space Pollen Model for Paleoclimate Reconstruction

    Science.gov (United States)

    Wahl, E. R.; Schoelzel, C.

    2010-12-01

    Paleoenvironmental reconstruction from fossil pollen often attempts to take advantage of the rich taxonomic diversity in such data. Here, a taxonomically "reduced-space" reconstruction model is explored that would be parsimonious in introducing parameters needing to be estimated within a Bayesian Hierarchical Modeling context. This work involves a refinement of the traditional pollen ratio method. This method is useful when one (or a few) dominant pollen type(s) in a region have a strong positive correlation with a climate variable of interest and another (or a few) dominant pollen type(s) have a strong negative correlation. When, e.g., counts of pollen taxa a and b (r >0) are combined with pollen types c and d (r logistic generalized linear model (GLM). The GLM can readily model this relationship in the forward form, pollen = g(climate), which is more physically realistic than inverse models often used in paleoclimate reconstruction [climate = f(pollen)]. The specification of the model is: rnum Bin(n,p), where E(r|T) = p = exp(η)/[1+exp(η)], and η = α + β(T); r is the pollen ratio formed as above, rnum is the ratio numerator, n is the ratio denominator (i.e., the sum of pollen counts), the denominator-specific count is (n - rnum), and T is the temperature at each site corresponding to a specific value of r. Ecological and empirical screening identified the model (Spruce+Birch) / (Spruce+Birch+Oak+Hickory) for use in temperate eastern N. America. α and β were estimated using both "traditional" and Bayesian GLM algorithms (in R). Although it includes only four pollen types, the ratio model yields more explained variation ( 80%) in the pollen-temperature relationship of the study region than a 64-taxon modern analog technique (MAT). Thus, the new pollen ratio method represents an information-rich, reduced space data model that can be efficiently employed in a BHM framework. The ratio model can directly reconstruct past temperature by solving the GLM equations

  8. Industrial dynamic tomographic reconstruction

    International Nuclear Information System (INIS)

    Oliveira, Eric Ferreira de

    2016-01-01

    The state of the art methods applied to industrial processes is currently based on the principles of classical tomographic reconstructions developed for tomographic patterns of static distributions, or is limited to cases of low variability of the density distribution function of the tomographed object. Noise and motion artifacts are the main problems caused by a mismatch in the data from views acquired in different instants. All of these add to the known fact that using a limited amount of data can result in the presence of noise, artifacts and some inconsistencies with the distribution under study. One of the objectives of the present work is to discuss the difficulties that arise from implementing reconstruction algorithms in dynamic tomography that were originally developed for static distributions. Another objective is to propose solutions that aim at reducing a temporal type of information loss caused by employing regular acquisition systems to dynamic processes. With respect to dynamic image reconstruction it was conducted a comparison between different static reconstruction methods, like MART and FBP, when used for dynamic scenarios. This comparison was based on a MCNPx simulation as well as an analytical setup of an aluminum cylinder that moves along the section of a riser during the process of acquisition, and also based on cross section images from CFD techniques. As for the adaptation of current tomographic acquisition systems for dynamic processes, this work established a sequence of tomographic views in a just-in-time fashion for visualization purposes, a form of visually disposing density information as soon as it becomes amenable to image reconstruction. A third contribution was to take advantage of the triple color channel necessary to display colored images in most displays, so that, by appropriately scaling the acquired values of each view in the linear system of the reconstruction, it was possible to imprint a temporal trace into the regularly

  9. Tumescent mastectomy technique in autologous breast reconstruction.

    Science.gov (United States)

    Vargas, Christina R; Koolen, Pieter G L; Ho, Olivia A; Ricci, Joseph A; Tobias, Adam M; Lin, Samuel J; Lee, Bernard T

    2015-10-01

    Use of the tumescent mastectomy technique has been reported to facilitate development of a hydrodissection plane, reduce blood loss, and provide adjunct analgesia. Previous studies suggest that tumescent dissection may contribute to adverse outcomes after immediate implant reconstruction; however, its effect on autologous microsurgical reconstruction has not been established. A retrospective review was conducted of all immediate microsurgical breast reconstruction procedures at a single academic center between January 2004 and December 2013. Records were queried for age, body mass index, mastectomy weight, diabetes, hypertension, smoking, preoperative radiation, reconstruction flap type, and autologous flap weight. Outcomes of interest were mastectomy skin necrosis, complete and partial flap loss, return to the operating room, breast hematoma, seroma, and infection. There were 730 immediate autologous breast reconstructions performed during the study period; 46% with the tumescent dissection technique. Groups were similar with respect to baseline patient and procedural characteristics. Univariate analysis revealed no significant difference in the incidence of mastectomy skin necrosis, complete or partial flap loss, return to the operating room, operative time, estimated blood loss, recurrence, breast hematoma, seroma, or infection in patients undergoing tumescent mastectomy. Multivariate analysis also demonstrated no significant association between the use of tumescent technique and postoperative breast mastectomy skin necrosis (P = 0.980), hematoma (P = 0.759), or seroma (P = 0.340). Use of the tumescent dissection technique during mastectomy is not significantly associated with adverse outcomes after microsurgical breast reconstruction. Despite concern for its impact on implant reconstruction, our findings suggest that this method can be used safely preceding autologous procedures. Copyright © 2015 Elsevier Inc. All rights reserved.

  10. Alternative reconstruction after pancreaticoduodenectomy

    Directory of Open Access Journals (Sweden)

    Cooperman Avram M

    2008-01-01

    Full Text Available Abstract Background Pancreaticoduodenectomy is the procedure of choice for tumors of the head of the pancreas and periampulla. Despite advances in surgical technique and postoperative care, the procedure continues to carry a high morbidity rate. One of the most common morbidities is delayed gastric emptying with rates of 15%–40%. Following two prolonged cases of delayed gastric emptying, we altered our reconstruction to avoid this complication altogether. Subsequently, our patients underwent a classic pancreaticoduodenectomy with an undivided Roux-en-Y technique for reconstruction. Methods We reviewed the charts of our last 13 Whipple procedures evaluating them for complications, specifically delayed gastric emptying. We compared the outcomes of those patients to a control group of 15 patients who underwent the Whipple procedure with standard reconstruction. Results No instances of delayed gastric emptying occurred in patients who underwent an undivided Roux-en-Y technique for reconstruction. There was 1 wound infection (8%, 1 instance of pneumonia (8%, and 1 instance of bleeding from the gastrojejunal staple line (8%. There was no operative mortality. Conclusion Use of the undivided Roux-en-Y technique for reconstruction following the Whipple procedure may decrease the incidence of delayed gastric emptying. In addition, it has the added benefit of eliminating bile reflux gastritis. Future randomized control trials are recommended to further evaluate the efficacy of the procedure.

  11. Mastectomy skin necrosis after microsurgical breast reconstruction.

    Science.gov (United States)

    Vargas, Christina R; Koolen, Pieter G; Anderson, Katarina E; Paul, Marek A; Tobias, Adam M; Lin, Samuel J; Lee, Bernard T

    2015-10-01

    Mastectomy skin necrosis represents a significant clinical morbidity after immediate breast reconstruction. In addition to aesthetic deformity, necrosis of the native mastectomy skin may require debridement, additional reconstruction, or prolonged wound care and potentially delay oncologic treatment. This study aims to evaluate patient and procedural characteristics to identify predictors of mastectomy skin necrosis after microsurgical breast reconstruction. A retrospective review was performed of all immediate microsurgical breast reconstructions performed at a single academic center. Patient records were queried for age, diabetes, active smoking, previous breast surgery, preoperative radiation, preoperative chemotherapy, body mass index, mastectomy type, mastectomy weight, flap type, autologous flap type, and postoperative mastectomy skin flap necrosis. There were 746 immediate autologous microsurgical flaps performed by three plastic surgeons at our institution during the study period. The incidence of mastectomy skin flap necrosis was 13.4%. Univariate analysis revealed a significantly higher incidence of mastectomy skin necrosis in patients with higher mastectomy weight (P mastectomy type. Multivariate analysis demonstrated statistically significant associations between mastectomy skin necrosis and both increasing mastectomy weight (odds ratio 1.348 per quartile increase, P = 0.009) and diabetes (odds ratio 2.356, P = 0.011). Increasing mastectomy weight and coexisting diabetes are significantly associated with postoperative mastectomy skin necrosis after microsurgical reconstruction. These characteristics should be considered during patient counseling, procedure selection, operative planning, and intraoperative tissue viability assessment. Copyright © 2015 Elsevier Inc. All rights reserved.

  12. Reconstructing random media

    International Nuclear Information System (INIS)

    Yeong, C.L.; Torquato, S.

    1998-01-01

    We formulate a procedure to reconstruct the structure of general random heterogeneous media from limited morphological information by extending the methodology of Rintoul and Torquato [J. Colloid Interface Sci. 186, 467 (1997)] developed for dispersions. The procedure has the advantages that it is simple to implement and generally applicable to multidimensional, multiphase, and anisotropic structures. Furthermore, an extremely useful feature is that it can incorporate any type and number of correlation functions in order to provide as much morphological information as is necessary for accurate reconstruction. We consider a variety of one- and two-dimensional reconstructions, including periodic and random arrays of rods, various distribution of disks, Debye random media, and a Fontainebleau sandstone sample. We also use our algorithm to construct heterogeneous media from specified hypothetical correlation functions, including an exponentially damped, oscillating function as well as physically unrealizable ones. copyright 1998 The American Physical Society

  13. Delayed breast implant reconstruction

    DEFF Research Database (Denmark)

    Hvilsom, Gitte B.; Hölmich, Lisbet R.; Steding-Jessen, Marianne

    2012-01-01

    We evaluated the association between radiation therapy and severe capsular contracture or reoperation after 717 delayed breast implant reconstruction procedures (288 1- and 429 2-stage procedures) identified in the prospective database of the Danish Registry for Plastic Surgery of the Breast during...... of radiation therapy was associated with a non-significantly increased risk of reoperation after both 1-stage (HR = 1.4; 95% CI: 0.7-2.5) and 2-stage (HR = 1.6; 95% CI: 0.9-3.1) procedures. Reconstruction failure was highest (13.2%) in the 2-stage procedures with a history of radiation therapy. Breast...... reconstruction approaches other than implants should be seriously considered among women who have received radiation therapy....

  14. Revealing Rembrandt

    Directory of Open Access Journals (Sweden)

    Andrew J Parker

    2014-04-01

    Full Text Available The power and significance of artwork in shaping human cognition is self-evident. The starting point for our empirical investigations is the view that the task of neuroscience is to integrate itself with other forms of knowledge, rather than to seek to supplant them. In our recent work, we examined a particular aspect of the appreciation of artwork using present-day functional magnetic resonance imaging (fMRI. Our results emphasised the continuity between viewing artwork and other human cognitive activities. We also showed that appreciation of a particular aspect of artwork, namely authenticity, depends upon the co-ordinated activity between the brain regions involved in multiple decision making and those responsible for processing visual information. The findings about brain function probably have no specific consequences for understanding how people respond to the art of Rembrandt in comparison with their response to other artworks. However, the use of images of Rembrandt’s portraits, his most intimate and personal works, clearly had a significant impact upon our viewers, even though they have been spatially confined to the interior of an MRI scanner at the time of viewing. Neuroscientific studies of humans viewing artwork have the capacity to reveal the diversity of human cognitive responses that may be induced by external advice or context as people view artwork in a variety of frameworks and settings.

  15. HEEL BONE RECONSTRUCTIVE OSTEOSYNTHESIS

    Directory of Open Access Journals (Sweden)

    A. N. Svetashov

    2010-01-01

    Full Text Available To detect the most appropriate to heel bone injury severity variants of reconstructive osteosynthesis it was analyzed treatment results of 56 patients. In 15 (26.8% patients classic methods of surgical service were applied, in 41 (73.2% cases to restore the defect porous implants were used. Osteosynthesis without heel bone plastic restoration accomplishment was ineffective in 60% patients from control group. Reconstructive osteosynthesis method ensures long-term good functional effect of rehabilitation in 96.4% patients from the basic group.

  16. Vertex reconstruction in CMS

    International Nuclear Information System (INIS)

    Chabanat, E.; D'Hondt, J.; Estre, N.; Fruehwirth, R.; Prokofiev, K.; Speer, T.; Vanlaer, P.; Waltenberger, W.

    2005-01-01

    Due to the high track multiplicity in the final states expected in proton collisions at the LHC experiments, novel vertex reconstruction algorithms are required. The vertex reconstruction problem can be decomposed into a pattern recognition problem ('vertex finding') and an estimation problem ('vertex fitting'). Starting from least-squares methods, robustifications of the classical algorithms are discussed and the statistical properties of the novel methods are shown. A whole set of different approaches for the vertex finding problem is presented and compared in relevant physics channels

  17. Vertex Reconstruction in CMS

    CERN Document Server

    Chabanat, E; D'Hondt, J; Vanlaer, P; Prokofiev, K; Speer, T; Frühwirth, R; Waltenberger, W

    2005-01-01

    Because of the high track multiplicity in the final states expected in proton collisions at the LHC experiments, novel vertex reconstruction algorithms are required. The vertex reconstruction problem can be decomposed into a pattern recognition problem ("vertex finding") and an estimation problem ("vertex fitting"). Starting from least-square methods, ways to render the classical algorithms more robust are discussed and the statistical properties of the novel methods are shown. A whole set of different approaches for the vertex finding problem is presented and compared in relevant physics channels.

  18. Reconstructing Neutrino Mass Spectrum

    OpenAIRE

    Smirnov, A. Yu.

    1999-01-01

    Reconstruction of the neutrino mass spectrum and lepton mixing is one of the fundamental problems of particle physics. In this connection we consider two central topics: (i) the origin of large lepton mixing, (ii) possible existence of new (sterile) neutrino states. We discuss also possible relation between large mixing and existence of sterile neutrinos.

  19. Position reconstruction in LUX

    Science.gov (United States)

    Akerib, D. S.; Alsum, S.; Araújo, H. M.; Bai, X.; Bailey, A. J.; Balajthy, J.; Beltrame, P.; Bernard, E. P.; Bernstein, A.; Biesiadzinski, T. P.; Boulton, E. M.; Brás, P.; Byram, D.; Cahn, S. B.; Carmona-Benitez, M. C.; Chan, C.; Currie, A.; Cutter, J. E.; Davison, T. J. R.; Dobi, A.; Druszkiewicz, E.; Edwards, B. N.; Fallon, S. R.; Fan, A.; Fiorucci, S.; Gaitskell, R. J.; Genovesi, J.; Ghag, C.; Gilchriese, M. G. D.; Hall, C. R.; Hanhardt, M.; Haselschwardt, S. J.; Hertel, S. A.; Hogan, D. P.; Horn, M.; Huang, D. Q.; Ignarra, C. M.; Jacobsen, R. G.; Ji, W.; Kamdin, K.; Kazkaz, K.; Khaitan, D.; Knoche, R.; Larsen, N. A.; Lenardo, B. G.; Lesko, K. T.; Lindote, A.; Lopes, M. I.; Manalaysay, A.; Mannino, R. L.; Marzioni, M. F.; McKinsey, D. N.; Mei, D.-M.; Mock, J.; Moongweluwan, M.; Morad, J. A.; Murphy, A. St. J.; Nehrkorn, C.; Nelson, H. N.; Neves, F.; O'Sullivan, K.; Oliver-Mallory, K. C.; Palladino, K. J.; Pease, E. K.; Rhyne, C.; Shaw, S.; Shutt, T. A.; Silva, C.; Solmaz, M.; Solovov, V. N.; Sorensen, P.; Sumner, T. J.; Szydagis, M.; Taylor, D. J.; Taylor, W. C.; Tennyson, B. P.; Terman, P. A.; Tiedt, D. R.; To, W. H.; Tripathi, M.; Tvrznikova, L.; Uvarov, S.; Velan, V.; Verbus, J. R.; Webb, R. C.; White, J. T.; Whitis, T. J.; Witherell, M. S.; Wolfs, F. L. H.; Xu, J.; Yazdani, K.; Young, S. K.; Zhang, C.

    2018-02-01

    The (x, y) position reconstruction method used in the analysis of the complete exposure of the Large Underground Xenon (LUX) experiment is presented. The algorithm is based on a statistical test that makes use of an iterative method to recover the photomultiplier tube (PMT) light response directly from the calibration data. The light response functions make use of a two dimensional functional form to account for the photons reflected on the inner walls of the detector. To increase the resolution for small pulses, a photon counting technique was employed to describe the response of the PMTs. The reconstruction was assessed with calibration data including 83mKr (releasing a total energy of 41.5 keV) and 3H (β- with Q = 18.6 keV) decays, and a deuterium-deuterium (D-D) neutron beam (2.45 MeV) . Within the detector's fiducial volume, the reconstruction has achieved an (x, y) position uncertainty of σ = 0.82 cm and σ = 0.17 cm for events of only 200 and 4,000 detected electroluminescence photons respectively. Such signals are associated with electron recoils of energies ~0.25 keV and ~10 keV, respectively. The reconstructed position of the smallest events with a single electron emitted from the liquid surface (22 detected photons) has a horizontal (x, y) uncertainty of 2.13 cm.

  20. Basis for paleoenvironmental interpretation of magnetic properties of sediment from Upper Klamath Lake (Oregon): Effects of weathering and mineralogical sorting

    Science.gov (United States)

    Rosenbaum, J.G.; Reynolds, R.L.

    2004-01-01

    Studies of magnetic properties enable reconstruction of environmental conditions that affected magnetic minerals incorporated in sediments from Upper Klamath Lake. Analyses of stream sediment samples from throughout the catchment of Upper Klamath Lake show that alteration of Fe-oxide minerals during subaerial chemical weathering of basic volcanic rocks has significantly changed magnetic properties of surficial deposits. Titanomagnetite, which is abundant both as phenocrysts and as microcrystals in fresh volcanic rocks, is progressively destroyed during weathering. Because fine-grained magnetite is readily altered due to large surface-to-volume ratios, weathering causes an increase in average magnetic grain size as well as reduction in the quantity of titanomagnetite both absolutely and relative to hematite. Hydrodynamic mineralogical sorting also produces differences in magnetic properties among rock and mineral grains of differing sizes. Importantly, removal of coarse silicate and Fe-oxide grains by sorting concentrated extremely fine-grained magnetite in the resulting sediment. The effects of weathering and sorting of minerals cannot be completely separated. These processes combine to produce the magnetic properties of a non-glacial lithic component of Upper Klamath Lake sediments, which is characterized by relatively low magnetite content and coarse magnetic grain size. Hydrodynamic sorting alone causes significant differences between the magnetic properties of glacial flour in lake sediments and of fresh volcanic rocks in the catchment. In comparison to source volcanic rocks, glacial flour in the lake sediment is highly enriched in extremely fine-grained magnetite.

  1. Vegetation history of central Chukotka deduced from permafrost paleoenvironmental records of the El'gygytgyn Impact Crater

    Directory of Open Access Journals (Sweden)

    A. A. Andreev

    2012-08-01

    Full Text Available Frozen sediments from three cores bored in the permafrost surrounding the El'gygytgyn Impact Crater Lake have been studied for pollen, non-pollen palynomorphs, plant macrofossils and rhizopods. The palynological study of these cores contributes to a higher resolution of time intervals presented in a poor temporal resolution in the lacustrine sediments; namely the Allerød and succeeding periods. Moreover, the permafrost records better reflect local environmental changes, allowing a more reliable reconstruction of the local paleoenvironments. The new data confirm that shrub tundra with dwarf birch, shrub alder and willow dominated the lake surroundings during the Allerød warming. Younger Dryas pollen assemblages reflect abrupt changes to grass-sedge-herb dominated environments reflecting significantly drier and cooler climate. Low shrub tundra with dwarf birch and willow dominate the lake vicinity at the onset of the Holocene. The find of larch seeds indicate its local presence around 11 000 cal yr BP and, thus a northward shift of treeline by about 100 km during the early Holocene thermal optimum. Forest tundra with larch and shrub alder stands grew in the area during the early Holocene. After ca. 3500 cal yr BP similar-to-modern plant communities became common in the lake vicinity.

  2. Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: a relaxed molecular clock study within xenarthrans

    Directory of Open Access Journals (Sweden)

    Vizcaíno Sergio F

    2004-04-01

    Full Text Available Abstract Background Comparative genomic data among organisms allow the reconstruction of their phylogenies and evolutionary time scales. Molecular timings have been recently used to suggest that environmental global change have shaped the evolutionary history of diverse terrestrial organisms. Living xenarthrans (armadillos, anteaters and sloths constitute an ideal model for studying the influence of past environmental changes on species diversification. Indeed, extant xenarthran species are relicts from an evolutionary radiation enhanced by their isolation in South America during the Tertiary era, a period for which major climate variations and tectonic events are relatively well documented. Results We applied a Bayesian approach to three nuclear genes in order to relax the molecular clock assumption while accounting for differences in evolutionary dynamics among genes and incorporating paleontological uncertainties. We obtained a molecular time scale for the evolution of extant xenarthrans and other placental mammals. Divergence time estimates provide substantial evidence for contemporaneous diversification events among independent xenarthran lineages. This correlated pattern of diversification might possibly relate to major environmental changes that occurred in South America during the Cenozoic. Conclusions The observed synchronicity between planetary and biological events suggests that global change played a crucial role in shaping the evolutionary history of extant xenarthrans. Our findings open ways to test this hypothesis further in other South American mammalian endemics like hystricognath rodents, platyrrhine primates, and didelphid marsupials.

  3. Paleoenvironmental evolution based on benthic foraminifera biofacies of the Paraíba do Sul Deltaic Complex, eastern Brazil

    Science.gov (United States)

    Gasparini, Sarah Pereira; Vilela, Claudia Gutterres

    2017-12-01

    The paleoecology and distribution of benthic foraminiferal assemblages were analyzed in the core 2-MU-1-RJ well, drilled in the Paraíba do Sul Deltaic Complex, Rio de Janeiro (Brazil). An abundant assemblage was found in the upper portion of the well core, inferred to be pleistocenic deposits. The coastal dynamic was recognized from five biofacies based on clusters, the Planktonic/Benthic (P/B) ratios and indicator species distribution in the core. Several biofacies were identified along the core depending on the species dominance. From the bottom to the top of the core, the biofacies succession represents the environmental changes in the coastal area associated to sea-level oscillations. The biofacies ABP dominated by Ammonia parkinsoniana and Bolivina spp. and Pararotalia cananeiaensis represents an inner shelf environment; biofacies QP dominated by shelf miliolids species; biofacies PGH, dominated by P. cananeiaensis, Gavelinopsis praegeri, and Hanzawaia nitidula, represents the estuary complex with middle or outer shelf influence; biofacies QL represents hypersaline waters dominated by lagoonal miliolids; and biofacies HP characterized by Haynesina germanica and P. cananeiaensis is associated with paralic environments. Marine ingressions are recorded and those biofacies show the pleistocenic coastal hydrodinamic in the deltaic complex. The foraminiferal biofacies contribute with detailed information to sedimentary facies previously characterized in the study area by the reconstruction of paleoenvironment succession.

  4. Kerogen morphology and geochemistry at the Permian-Triassic transition in the Meishan section, South China: Implication for paleoenvironmental variation

    Science.gov (United States)

    Sawada, Ken; Kaiho, Kunio; Okano, Kazuki

    2012-08-01

    Detailed fluorescent microscopic observations and organic geochemical analyses for insoluble sedimentary organic matter (kerogens) are conducted on the end-Permian to earliest Triassic sediments in the Meishan section A of South China. The main objectives of the present study are to reconstruct variations of marine and terrestrial environments, and to evaluate bulk characteristics of terrestrial input in the palaeo-Tethys ocean for the Permian-Triassic boundary (PTB). Most of kerogens in the Meishan section are mainly composed of marine algae-derived amorphous organic matter, while terrestrial plant-derived amorphous organic matter is remarkably dominant in the mass extinction horizon reported previously. The relative abundances of marine organic matter may vary depending on marine production rather than terrestrial input in the palaeo-Tethys associated with changing terrestrial vegetation. We also identified aromatic furans as major compounds in kerogen pyrolysate of all layers. It is possible that sources of aromatic furans with alkyl group, fungi and lichen, proliferated as disaster biota in terrestrial ecosystem through the PTB. Higher abundances of herbaceous organic matter are observed in the layers above the mass extinction horizon. However, the conifer biomarker retene can be identified in kerogen pyrolysates of all layers. These results imply that the productions of herbaceous plants increased as dominant pioneer biota in early stage of recovery for terrestrial ecosystem after its collapse, but also that woody plant potentially continued to be produced in land area throughout the end-Permian and earliest-Triassic.

  5. Direct iterative reconstruction of computed tomography trajectories (DIRECTT)

    International Nuclear Information System (INIS)

    Lange, A.; Hentschel, M.P.; Schors, J.

    2004-01-01

    The direct reconstruction approach employs an iterative procedure by selection of and angular averaging over projected trajectory data of volume elements. This avoids the blur effects of the classical Fourier method due to the sampling theorem. But longer computing time is required. The reconstructed tomographic images reveal at least the spatial resolution of the radiation detector. Any set of projection angles may be selected for the measurements. Limited rotation of the object yields still good reconstruction of details. Projections of a partial region of the object can be reconstructed without additional artifacts thus reducing the overall radiation dose. Noisy signal data from low dose irradiation have low impact on spatial resolution. The image quality is monitored during all iteration steps and is pre-selected according to the specific requirements. DIRECTT can be applied independently from the measurement equipment in addition to conventional reconstruction or as a refinement filter. (author)

  6. Sedimentary facies analysis of the Mesozoic clastic rocks in Southern Peru (Tacna, 18°S): Towards a paleoenvironmental Redefinition and stratigraphic Reorganization

    Science.gov (United States)

    Alván, Aldo; Jacay, Javier; Caracciolo, Luca; Sánchez, Elvis; Trinidad, Inés

    2018-07-01

    The Mesozoic rocks of southern Peru comprise a Middle Jurassic to Early Cretaceous sedimentary sequence deposited during a time interval of approximately 34 Myr. In Tacna, these rocks are detrital and constitute the Yura Group (Callovian to Tithonian) and the Hualhuani Formation (Berriasian). Basing on robust interpretation of facies and petrographic analysis, we reconstruct the depositional settings of such units and provide a refined stratigraphic framework. Accordingly, nine types of sedimentary facies and six architectural elements are defined. They preserve the record of a progradational fluvial system, in which two styless regulated the dispersion of sediments: (i) a high-to moderate-sinuosity meandering setting (Yura Group), and a later (ii) incipient braided setting (Hualhuani Formation). The Yura Group (Callovian-Tithonian) represents the onset of floodplain deposits and lateral accretion of point-bar deposits sited on a semi-flat topography. Nonetheless, the progradational sequence was affected by at least two rapid marine ingressions occurred during Middle Callovian and Tithonian times. Such marine ingressions reveal the proximity of a shallow marine setting and incipient carbonate deposition. In response to increase in topographic gradient, the Hualhuani Formation (Berriasian) deposited as extensive multistory sandy channels. The mineralogy of the Mesozoic sediments suggests sediment supplies and intense recycling from a craton interior (i.e. Amazon Craton and/or plutonic sources) located eastward of the study area.

  7. Are the paleoclimatic reconstructions based on mammals biased by the local landscape?

    Science.gov (United States)

    Garcia-Alix, Antonio

    2017-04-01

    The paleoclimatic reconstructions deduced from mammal associations might have been biased by the complex local effect of the landscape. This effect is especially important in tectonically active regions where important landscape changes occurred in short-time periods. In this abstract, I present a coupled paleoenvironmental approach 1) using the ecological requirement of the faunal associations, and 2) using isotopic analyses in both sediments and small mammal teeth in order to discern between climate and landscape effects. Southern Iberian Peninsula was a tectonically active area during the late Miocene and Pliocene, and the environmental and humidity data deduced from the faunal associations agree with the sedimentary evolution of the basin. However, these humidity trends are usually opposite to the humidity reconstruction deduced from the carbon isotopic data in rodent teeth and from the isotopic composition of the sediments (C and O), which are scarcely influenced by the landscape. So, changes in the landscape, probably boosted by tectonics, gave rise to the development of endorheic and/or exorheic systems in the areas and conditioned the extension of these systems, affecting taxa with high dependence on humidity. Similar outcomes have been observed in early-middle Miocene records from north Spain. In those cases, the response of small mammal associations to abrupt climate changes might have been also buffered by the landscape. On the other hand, records where there was no important landscape changes, such as those from an early- middle Miocene coastal area of eastern Spain, do not show that disagreement in the humidity and environmental reconstructions following both methods.

  8. Silicon and Germanium (111) Surface Reconstruction

    Science.gov (United States)

    Hao, You Gong

    Silicon (111) surface (7 x 7) reconstruction has been a long standing puzzle. For the last twenty years, various models were put forward to explain this reconstruction, but so far the problem still remains unsolved. Recent ion scattering and channeling (ISC), scanning tunneling microscopy (STM) and transmission electron diffraction (TED) experiments reveal some new results about the surface which greatly help investigators to establish better models. This work proposes a silicon (111) surface reconstruction mechanism, the raising and lowering mechanism which leads to benzene -like ring and flower (raised atom) building units. Based on these building units a (7 x 7) model is proposed, which is capable of explaining the STM and ISC experiment and several others. Furthermore the building units of the model can be used naturally to account for the germanium (111) surface c(2 x 8) reconstruction and other observed structures including (2 x 2), (5 x 5) and (7 x 7) for germanium as well as the (/3 x /3)R30 and (/19 x /19)R23.5 impurity induced structures for silicon, and the higher temperature disordered (1 x 1) structure for silicon. The model is closely related to the silicon (111) surface (2 x 1) reconstruction pi-bonded chain model, which is the most successful model for the reconstruction now. This provides an explanation for the rather low conversion temperature (560K) of the (2 x 1) to the (7 x 7). The model seems to meet some problems in the explanation of the TED result, which is explained very well by the dimer, adatom and stacking fault (DAS) model proposed by Takayanagi. In order to explain the TED result, a variation of the atomic scattering factor is proposed. Comparing the benzene-like ring model with the DAS model, the former needs more work to explain the TED result and the later has to find a way to explain the silicon (111) surface (1 x 1) disorder experiment.

  9. Calcified aquatic insect larval constructions in the Pleistocene tufa of Jebel El Mida, Gafsa, southern Tunisia: Recognition and paleoenvironmental significance

    Science.gov (United States)

    Ben Ahmed, Walid; Henchiri, Mohsen; Mastouri, Amna; Slim S'himi, Najet

    2018-04-01

    Calcified aquatic larval cases were recognized and identified in the Pleistocene tufa masses of Jebel El Mida, Gafsa, southern Tunisia. These larval constructions belong to three main insect families: caddisflies (Trichoptera, Hydropsychidae), midges (Diptera, Chironomidae) and aquatic moths (Lepidoptera, Pyralidae) that inhabited tubes in the tufa and spun nets. Each insect community has its distinctive characteristics of larval constructions that allow their recognition. The larval constructions recognized comprise fixed and portable (for caddisflies) dwelling cases and silken retreats and feeding capture nets. These last-mentioned are almost completely eroded and only remnants are preserved. The spatial distribution of these larval cases within the tufa is not random but, rather imposed by some specific paleohydraulic conditions. It's the reason why aquatic insect larval constructions are considered as prominent tool for the reconstruction of tufa and travertine depositional environments. Chironomid fixed dwelling cases (diameters range from 0.6 mm for clustered tubes to 3 mm) indicate the deposition of tufa under lotic (flowing) or lentic (standing) water conditions. The later hydraulic condition is shared with hydropsychids with fixed retreats (0.2-4 mm in diameter). Portable case-building caddisflies (case length ranging from 5 to 20 mm, and diameter from 3 to 5 mm at the cephalic end) prefer lentic conditions and are almost completely missing in high-energy flowing water locations that are preferred by pyralids (tubes are between 5 and 10 mm long and 3 mm in diameter). These insect families benefit from inhabiting the tufa by the availability of construction materials of their cases and the necessary space for their development.

  10. Paleo-environmental Setting of the Murray Formation of Aeolis Mons, Gale Crater, Mars, as Explored by the Curiosity Rover

    Science.gov (United States)

    Lewis, K. W.; Fedo, C.; Grotzinger, J. P.; Gupta, S.; Stein, N.; Rivera-Hernandez, F.; Watkins, J. A.; Banham, S.; Edgett, K. S.; Minitti, M. E.; Schieber, J.; Edgar, L. A.; Siebach, K. L.; Stack, K.; Newsom, H. E.; House, C. H.; Sumner, D. Y.; Vasavada, A. R.

    2017-12-01

    Since landing, the Mars Science Laboratory Curiosity rover climbed 300 meters in elevation from the floor of north Gale crater up the lower northwest flank of Aeolis Mons ("Mount Sharp"). Nearly 200 meters of this ascent was accomplished in the 1.5 years alone, as the rover was driven up-section through the sedimentary rocks of the informally designated "Murray" formation. This unit comprises a large fraction of the lower strata of Mt. Sharp along the rover traverse. Our exploration of the Murray formation reveals a diverse suite of fine-grained facies. Grain sizes range from finer grains than can be resolved by the MAHLI imager (particles bearing Vera Rubin Ridge, continues to reveal the complex and long-lived depositional history of the Gale crater basin.

  11. Algebraic reconstruction techniques for spectral reconstruction in diffuse optical tomography

    International Nuclear Information System (INIS)

    Brendel, Bernhard; Ziegler, Ronny; Nielsen, Tim

    2008-01-01

    Reconstruction in diffuse optical tomography (DOT) necessitates solving the diffusion equation, which is nonlinear with respect to the parameters that have to be reconstructed. Currently applied solving methods are based on the linearization of the equation. For spectral three-dimensional reconstruction, the emerging equation system is too large for direct inversion, but the application of iterative methods is feasible. Computational effort and speed of convergence of these iterative methods are crucial since they determine the computation time of the reconstruction. In this paper, the iterative methods algebraic reconstruction technique (ART) and conjugated gradients (CGs) as well as a new modified ART method are investigated for spectral DOT reconstruction. The aim of the modified ART scheme is to speed up the convergence by considering the specific conditions of spectral reconstruction. As a result, it converges much faster to favorable results than conventional ART and CG methods

  12. ["Long-branch Attraction" artifact in phylogenetic reconstruction].

    Science.gov (United States)

    Li, Yi-Wei; Yu, Li; Zhang, Ya-Ping

    2007-06-01

    Phylogenetic reconstruction among various organisms not only helps understand their evolutionary history but also reveal several fundamental evolutionary questions. Understanding of the evolutionary relationships among organisms establishes the foundation for the investigations of other biological disciplines. However, almost all the widely used phylogenetic methods have limitations which fail to eliminate systematic errors effectively, preventing the reconstruction of true organismal relationships. "Long-branch Attraction" (LBA) artifact is one of the most disturbing factors in phylogenetic reconstruction. In this review, the conception and analytic method as well as the avoidance strategy of LBA were summarized. In addition, several typical examples were provided. The approach to avoid and resolve LBA artifact has been discussed.

  13. Digital holographic reconstruction detection of localized corrosion arising from scratches

    Directory of Open Access Journals (Sweden)

    LIANG WANG

    2010-04-01

    Full Text Available In this study, electrochemical methods and the digital holographic reconstruction technique were combined to detect the localized scratch-induced corrosion process of Alloy 690 in 0.50 mol dm-3 H2SO4 containing 0.10 mol dm-3 NaCl. The numerical reconstruction method has been proved to be an effective technique to detect changes of solution concentration. One can obtain direct information from the reconstructed images and capture subtle more revealing changes. It provides a method to detect localized corrosion arising from scratches.

  14. Arctic Sea Level Reconstruction

    DEFF Research Database (Denmark)

    Svendsen, Peter Limkilde

    Reconstruction of historical Arctic sea level is very difficult due to the limited coverage and quality of tide gauge and altimetry data in the area. This thesis addresses many of these issues, and discusses strategies to help achieve a stable and plausible reconstruction of Arctic sea level from...... 1950 to today.The primary record of historical sea level, on the order of several decades to a few centuries, is tide gauges. Tide gauge records from around the world are collected in the Permanent Service for Mean Sea Level (PSMSL) database, and includes data along the Arctic coasts. A reasonable...... amount of data is available along the Norwegian and Russian coasts since 1950, and most published research on Arctic sea level extends cautiously from these areas. Very little tide gauge data is available elsewhere in the Arctic, and records of a length of several decades,as generally recommended for sea...

  15. Reconstructing warm inflation

    Science.gov (United States)

    Herrera, Ramón

    2018-03-01

    The reconstruction of a warm inflationary universe model from the scalar spectral index n_S(N) and the tensor to scalar ratio r( N) as a function of the number of e-folds N is studied. Under a general formalism we find the effective potential and the dissipative coefficient in terms of the cosmological parameters n_S and r considering the weak and strong dissipative stages under the slow roll approximation. As a specific example, we study the attractors for the index n_S given by nS-1∝ N^{-1} and for the ratio r∝ N^{-2}, in order to reconstruct the model of warm inflation. Here, expressions for the effective potential V(φ ) and the dissipation coefficient Γ (φ ) are obtained.

  16. Jet Vertex Charge Reconstruction

    CERN Document Server

    Nektarijevic, Snezana; The ATLAS collaboration

    2015-01-01

    A newly developed algorithm called the jet vertex charge tagger, aimed at identifying the sign of the charge of jets containing $b$-hadrons, referred to as $b$-jets, is presented. In addition to the well established track-based jet charge determination, this algorithm introduces the so-called \\emph{jet vertex charge} reconstruction, which exploits the charge information associated to the displaced vertices within the jet. Furthermore, the charge of a soft muon contained in the jet is taken into account when available. All available information is combined into a multivariate discriminator. The algorithm has been developed on jets matched to generator level $b$-hadrons provided by $t\\bar{t}$ events simulated at $\\sqrt{s}$=13~TeV using the full ATLAS detector simulation and reconstruction.

  17. Segmentation-DrivenTomographic Reconstruction

    DEFF Research Database (Denmark)

    Kongskov, Rasmus Dalgas

    such that the segmentation subsequently can be carried out by use of a simple segmentation method, for instance just a thresholding method. We tested the advantages of going from a two-stage reconstruction method to a one stage segmentation-driven reconstruction method for the phase contrast tomography reconstruction......The tomographic reconstruction problem is concerned with creating a model of the interior of an object from some measured data, typically projections of the object. After reconstructing an object it is often desired to segment it, either automatically or manually. For computed tomography (CT...

  18. LHCb jet reconstruction

    International Nuclear Information System (INIS)

    Francisco, Oscar; Rangel, Murilo; Barter, William; Bursche, Albert; Potterat, Cedric; Coco, Victor

    2012-01-01

    Full text: The Large Hadron Collider (LHC) is the most powerful particle accelerator in the world. It has been designed to collide proton beams at an energy up to 14 TeV in the center of mass. In 2011, the data taking was done with a center of mass energy of 7 TeV, the instant luminosity has reached values greater than 4 X 10 32 cm -2 s -1 and the integrated luminosity reached the value of 1,02fb -1 on the LHCb. The jet reconstruction is fundamental to observe events that can be used to test perturbative QCD (pQCD). It also provides a way to observe standard model channels and searches for new physics like SUSY. The anti-kt algorithm is a jet reconstruction algorithm that is based on the distance of the particles on the space ηX φ and on the transverse momentum of particles. To maximize the energy resolution all information about the trackers and the colorimeters are used on the LHCb experiment to create objects called particle flow objects that are used as input to anti-kt algorithm. The LHCb is specially interesting for jets studies because its η region is complementary to the others main experiments on LHC. We will present the first results of jet reconstruction using 2011 LHCb data. (author)

  19. LHCb jet reconstruction

    Energy Technology Data Exchange (ETDEWEB)

    Francisco, Oscar; Rangel, Murilo [Universidade Federal do Rio de Janeiro (UFRJ), RJ (Brazil); Barter, William [University of Cambridge, Cambridge (United Kingdom); Bursche, Albert [Universitat Zurich, Zurich (Switzerland); Potterat, Cedric [Universitat de Barcelona, Barcelona (Spain); Coco, Victor [Nikhef National Institute for Subatomic Physics, Amsterdam (Netherlands)

    2012-07-01

    Full text: The Large Hadron Collider (LHC) is the most powerful particle accelerator in the world. It has been designed to collide proton beams at an energy up to 14 TeV in the center of mass. In 2011, the data taking was done with a center of mass energy of 7 TeV, the instant luminosity has reached values greater than 4 X 10{sup 32} cm{sup -2}s{sup -1} and the integrated luminosity reached the value of 1,02fb{sup -1} on the LHCb. The jet reconstruction is fundamental to observe events that can be used to test perturbative QCD (pQCD). It also provides a way to observe standard model channels and searches for new physics like SUSY. The anti-kt algorithm is a jet reconstruction algorithm that is based on the distance of the particles on the space {eta}X {phi} and on the transverse momentum of particles. To maximize the energy resolution all information about the trackers and the colorimeters are used on the LHCb experiment to create objects called particle flow objects that are used as input to anti-kt algorithm. The LHCb is specially interesting for jets studies because its {eta} region is complementary to the others main experiments on LHC. We will present the first results of jet reconstruction using 2011 LHCb data. (author)

  20. The structure of reconstructed chalcopyrite surfaces

    Science.gov (United States)

    Thinius, Sascha; Islam, Mazharul M.; Bredow, Thomas

    2018-03-01

    Chalcopyrite (CuFeS2) surfaces are of major interest for copper exploitation in aqueous solution, called leaching. Since leaching is a surface process knowledge of the surface structure, bonding pattern and oxidation states is important for improving the efficiency. At present such information is not available from experimental studies. Therefore a detailed computational study of chalcopyrite surfaces is performed. The structures of low-index stoichiometric chalcopyrite surfaces {hkl} h, k, l ∈ {0, 1, 2} have been studied with density functional theory (DFT) and global optimization strategies. We have applied ab initio molecular dynamics (MD) in combination with simulated annealing (SA) in order to explore possible reconstructions via a minima hopping (MH) algorithm. In almost all cases reconstruction involving substantial rearrangement has occurred accompanied by reduction of the surface energy. The analysis of the change in the coordination sphere and migration during reconstruction reveals that S-S dimers are formed on the surface. Further it was observed that metal atoms near the surface move toward the bulk forming metal alloys passivated by sulfur. The obtained surface energies of reconstructed surfaces are in the range of 0.53-0.95 J/m2.

  1. Unpacking paleoenvironmental change across OAE2 using paired d34S records of pyrite and organic matter

    Science.gov (United States)

    Raven, M. R.; Gomes, M.; Fike, D. A.

    2017-12-01

    Pyrite sulfur isotopes have proven to be a powerful tool for reconstructing major changes in global redox state and the emergence of microbial metabolisms. Still, pyrite can be a challenging archive, as its formation depends on the availability of reactive iron species and can occur over multiple generations of sedimentary processes. Accordingly, pyrite δ34S records commonly have large point-to-point variability reflecting local processes. By pairing pyrite δ34S records with those of coexisting organic matter (OM), including both kerogens and extractable bitumens, we can begin to parse the various potential causes of this variability and gain greater insights into changes in the sedimentary paleoenvironment. Here, we present the first collection of records of OM δ34S for the Cretaceous, focusing on sections spanning Ocean Anoxic Event 2 (OAE2, 94 Mya), a period of globally widespread marine anoxia and carbon cycle disruption. In carbonates and shales from OAE2 in Pont d'Issole, France, pyrite and OM δ34S values vary in parallel throughout most of the section, consistent with their shared sulfide source. There are also distinct exceptions: In one interval, an excursion in pyrite δ34S is entirely absent from the organic sulfur record but associated with unusual organic sulfur redox speciation (by XAS), potentially reflecting later exposure to oxic porewaters. Across the core interval of shale deposition during OAE2, the offset between pyrite and OM δ34S values declines smoothly from +17.4 to -7.9‰, which we interpret in terms of changes in the speciation of detrital iron minerals that may have regional implications. We then compare these results with data for other well-characterized OAE2 sections, including Cismon (Italy), Tarfaya (Morocco), and the Demerara Rise (offshore Brazil), which represent environments with a variety of apparent redox states. These paired pyrite - OM δ34S profiles yield new information about how the local and global forcings

  2. [Reconstructive methods after Fournier gangrene].

    Science.gov (United States)

    Wallner, C; Behr, B; Ring, A; Mikhail, B D; Lehnhardt, M; Daigeler, A

    2016-04-01

    Fournier's gangrene is a variant of the necrotizing fasciitis restricted to the perineal and genital region. It presents as an acute life-threatening disease and demands rapid surgical debridement, resulting in large soft tissue defects. Various reconstructive methods have to be applied to reconstitute functionality and aesthetics. The objective of this work is to identify different reconstructive methods in the literature and compare them to our current concepts for reconstructing defects caused by Fournier gangrene. Analysis of the current literature and our reconstructive methods on Fournier gangrene. The Fournier gangrene is an emergency requiring rapid, calculated antibiotic treatment and radical surgical debridement. After the acute phase of the disease, appropriate reconstructive methods are indicated. The planning of the reconstruction of the defect depends on many factors, especially functional and aesthetic demands. Scrotal reconstruction requires a higher aesthetic and functional reconstructive degree than perineal cutaneous wounds. In general, thorough wound hygiene, proper pre-operative planning, and careful consideration of the patient's demands are essential for successful reconstruction. In the literature, various methods for reconstruction after Fournier gangrene are described. Reconstruction with a flap is required for a good functional result in complex regions as the scrotum and penis, while cutaneous wounds can be managed through skin grafting. Patient compliance and tissue demand are crucial factors in the decision-making process.

  3. Opal phytolith and isotopic studies of "Restinga" communities of Maricá, Brazil, as a modern reference for paleobiogeoclimatic reconstruction

    Directory of Open Access Journals (Sweden)

    Cátia Pereira dos Santos

    2015-09-01

    Full Text Available AbstractThe Maricá restinga, located in the eastern part of the Rio de Janeiro State (Brazil, corresponds to one of the few remaining preserved areas of the state's coastal plain. This paper reports on a study of the Maricá restinga plant communities and also presents an identification of the main plant species present in each community, with the objective of establishing reference collections, by the methods of the proxies opal phytoliths and stable carbon isotopes, for paleoenvironmental reconstructions of this coastal area during the Quaternary. Six plant communities, distributed perpendicularly to the coast line over sandy barriers, lagoonal plain, lagoon margin and weathered basement were identified: halophile-psamophile, scrub, herbaceous swamp, slack, shrubby vegetation and dry forest. In general, the plant species analyzed in each community presented low productivity of opal phytoliths, as only the Poaceae, Cyperaceae and Arecaceae families produce a great amount and diversity of morphotypes of opal phytoliths. The results of the analysis of stable carbon isotopes in sediments indicated a predominance of C3 or a mixture of C3 and C4 plants, presenting a close correlation with the results found in plants collected in each community. In conclusion, it was verified that the carbon isotope analysis associated with that of the opal phytoliths are good proxies for the reconstruction of vegetation in the study area.

  4. Late Holocene environmental reconstructions and their implications on flood events, typhoon, and agricultural activities in NE Taiwan

    Science.gov (United States)

    Wang, L.-C.; Behling, H.; Lee, T.-Q.; Li, H.-C.; Huh, C.-A.; Shiau, L.-J.; Chang, Y.-P.

    2014-10-01

    We reconstructed paleoenvironmental changes from a sediment archive of a lake in the floodplain of the Ilan Plain of NE Taiwan on multi-decadal resolution for the last ca. 1900 years. On the basis of pollen and diatom records, we evaluated past floods, typhoons, and agricultural activities in this area which are sensitive to the hydrological conditions in the western Pacific. Considering the high sedimentation rates with low microfossil preservations in our sedimentary record, multiple flood events were. identified during the period AD 100-1400. During the Little Ice Age phase 1 (LIA 1 - AD 1400-1620), the abundant occurrences of wetland plant (Cyperaceae) and diatom frustules imply less flood events under stable climate conditions in this period. Between AD 500 and 700 and the Little Ice Age phase 2 (LIA 2 - AD 1630-1850), the frequent typhoons were inferred by coarse sediments and planktonic diatoms, which represented more dynamical climate conditions than in the LIA 1. By comparing our results with the reconstructed changes in tropical hydrological conditions, we suggested that the local hydrology in NE Taiwan is strongly influenced by typhoon-triggered heavy rainfalls, which could be influenced by the variation of global temperature, the expansion of the Pacific warm pool, and the intensification of El Niño-Southern Oscillation (ENSO) events.

  5. Photometric Lunar Surface Reconstruction

    Science.gov (United States)

    Nefian, Ara V.; Alexandrov, Oleg; Morattlo, Zachary; Kim, Taemin; Beyer, Ross A.

    2013-01-01

    Accurate photometric reconstruction of the Lunar surface is important in the context of upcoming NASA robotic missions to the Moon and in giving a more accurate understanding of the Lunar soil composition. This paper describes a novel approach for joint estimation of Lunar albedo, camera exposure time, and photometric parameters that utilizes an accurate Lunar-Lambertian reflectance model and previously derived Lunar topography of the area visualized during the Apollo missions. The method introduced here is used in creating the largest Lunar albedo map (16% of the Lunar surface) at the resolution of 10 meters/pixel.

  6. Penile surgery and reconstruction.

    Science.gov (United States)

    Perovic, Sava V; Djordjevic, Miroslav L J; Kekic, Zoran K; Djakovic, Nenad G

    2002-05-01

    This review will highlight recent advances in the field of penile reconstructive surgery in the paediatric and adult population. It is based on the work published during the year 2001. Besides the anatomical and histological studies of the penis, major contributions have been described in congenital and acquired penile anomalies. Also, a few new techniques and modifications of old procedures are described in order to improve the final functional and aesthetic outcome. The techniques for penile enlargement present a trend in the new millennium, but are still at the stage of investigation.

  7. Progressive Reconstruction: A Methodology for Stabilization and Reconstruction Operations

    National Research Council Canada - National Science Library

    Rohr, Karl C

    2006-01-01

    ... these nations in accordance with stated United States' goals. The argument follows closely current and developing United States military doctrine on stabilization, reconstruction, and counterinsurgency operations...

  8. Synchronized dynamic dose reconstruction

    International Nuclear Information System (INIS)

    Litzenberg, Dale W.; Hadley, Scott W.; Tyagi, Neelam; Balter, James M.; Ten Haken, Randall K.; Chetty, Indrin J.

    2007-01-01

    Variations in target volume position between and during treatment fractions can lead to measurable differences in the dose distribution delivered to each patient. Current methods to estimate the ongoing cumulative delivered dose distribution make idealized assumptions about individual patient motion based on average motions observed in a population of patients. In the delivery of intensity modulated radiation therapy (IMRT) with a multi-leaf collimator (MLC), errors are introduced in both the implementation and delivery processes. In addition, target motion and MLC motion can lead to dosimetric errors from interplay effects. All of these effects may be of clinical importance. Here we present a method to compute delivered dose distributions for each treatment beam and fraction, which explicitly incorporates synchronized real-time patient motion data and real-time fluence and machine configuration data. This synchronized dynamic dose reconstruction method properly accounts for the two primary classes of errors that arise from delivering IMRT with an MLC: (a) Interplay errors between target volume motion and MLC motion, and (b) Implementation errors, such as dropped segments, dose over/under shoot, faulty leaf motors, tongue-and-groove effect, rounded leaf ends, and communications delays. These reconstructed dose fractions can then be combined to produce high-quality determinations of the dose distribution actually received to date, from which individualized adaptive treatment strategies can be determined

  9. LHCb; LHCb Jet Reconstruction

    CERN Multimedia

    Augusto, O

    2012-01-01

    The Large Hadron Collider (LHC) is the most powerful particle accelerator in the world. It has been designed to collide proton beams at an energy up to 14 TeV in the center of mass. In 2011, the data taking was done with a center of mass energy of 7 TeV, the instant luminosity has reached values greater than $4 \\times 10^{32} cm^{-2} s^{-1}$ and the integrated luminosity reached the value of 1.02 $fb^{-1}$ on the LHCb. The jet reconstruction is fundamental to observe events that can be used to test pertubative QCD (pQCD). It also provides a way to observe standard model channels and searches for new physics like SUSY. The anti-kt algorithm is a jet reconstruction algorithm that is based on the distance of the particles on the space $\\eta \\times \\phi$ and on the transverse momentum of particles. To maximize the energy resolution all information about the trackers and the calo...

  10. Three-dimensional ICT reconstruction

    International Nuclear Information System (INIS)

    Zhang Aidong; Li Ju; Chen Fa; Sun Lingxia

    2005-01-01

    The three-dimensional ICT reconstruction method is the hot topic of recent ICT technology research. In the context, qualified visual three-dimensional ICT pictures are achieved through multi-piece two-dimensional images accumulation by, combining with thresholding method and linear interpolation. Different direction and different position images of the reconstructed pictures are got by rotation and interception respectively. The convenient and quick method is significantly instructive to more complicated three-dimensional reconstruction of ICT images. (authors)

  11. Three-dimensional ICT reconstruction

    International Nuclear Information System (INIS)

    Zhang Aidong; Li Ju; Chen Fa; Sun Lingxia

    2004-01-01

    The three-dimensional ICT reconstruction method is the hot topic of recent ICT technology research. In the context qualified visual three-dimensional ICT pictures are achieved through multi-piece two-dimensional images accumulation by order, combining with thresholding method and linear interpolation. Different direction and different position images of the reconstructed pictures are got by rotation and interception respectively. The convenient and quick method is significantly instructive to more complicated three-dimensional reconstruction of ICT images. (authors)

  12. Carbon and hydrogen isotope fractionation under continuous light: implications for paleoenvironmental interpretations of the High Arctic during Paleogene warming.

    Science.gov (United States)

    Yang, Hong; Pagani, Mark; Briggs, Derek E G; Equiza, M A; Jagels, Richard; Leng, Qin; Lepage, Ben A

    2009-06-01

    The effect of low intensity continuous light, e.g., in the High Arctic summer, on plant carbon and hydrogen isotope fractionations is unknown. We conducted greenhouse experiments to test the impact of light quantity and duration on both carbon and hydrogen isotope compositions of three deciduous conifers whose fossil counterparts were components of Paleogene Arctic floras: Metasequoia glyptostroboides, Taxodium distichum, and Larix laricina. We found that plant leaf bulk carbon isotopic values of the examined species were 1.75-4.63 per thousand more negative under continuous light (CL) than under diurnal light (DL). Hydrogen isotope values of leaf n-alkanes under continuous light conditions revealed a D-enriched hydrogen isotope composition of up to 40 per thousand higher than in diurnal light conditions. The isotope offsets between the two light regimes is explained by a higher ratio of intercellular to atmospheric CO(2) concentration (C (i)/C (a)) and more water loss for plants under continuous light conditions during a 24-h transpiration cycle. Apparent hydrogen isotope fractionations between source water and individual lipids (epsilon(lipid-water)) range from -62 per thousand (Metasequoia C(27) and C(29)) to -87 per thousand (Larix C(29)) in leaves under continuous light. We applied these hydrogen fractionation factors to hydrogen isotope compositions of in situ n-alkanes from well-preserved Paleogene deciduous conifer fossils from the Arctic region to estimate the deltaD value in ancient precipitation. Precipitation in the summer growing season yielded a deltaD of -186 per thousand for late Paleocene, -157 per thousand for early middle Eocene, and -182 per thousand for late middle Eocene. We propose that high-latitude summer precipitation in this region was supplemented by moisture derived from regionally recycled transpiration of the polar forests that grew during the Paleogene warming.

  13. Virtual 3-D Facial Reconstruction

    Directory of Open Access Journals (Sweden)

    Martin Paul Evison

    2000-06-01

    Full Text Available Facial reconstructions in archaeology allow empathy with people who lived in the past and enjoy considerable popularity with the public. It is a common misconception that facial reconstruction will produce an exact likeness; a resemblance is the best that can be hoped for. Research at Sheffield University is aimed at the development of a computer system for facial reconstruction that will be accurate, rapid, repeatable, accessible and flexible. This research is described and prototypical 3-D facial reconstructions are presented. Interpolation models simulating obesity, ageing and ethnic affiliation are also described. Some strengths and weaknesses in the models, and their potential for application in archaeology are discussed.

  14. Entropy and transverse section reconstruction

    International Nuclear Information System (INIS)

    Gullberg, G.T.

    1976-01-01

    A new approach to the reconstruction of a transverse section using projection data from multiple views incorporates the concept of maximum entropy. The principle of maximizing information entropy embodies the assurance of minimizing bias or prejudice in the reconstruction. Using maximum entropy is a necessary condition for the reconstructed image. This entropy criterion is most appropriate for 3-D reconstruction of objects from projections where the system is underdetermined or the data are limited statistically. This is the case in nuclear medicine time limitations in patient studies do not yield sufficient projections

  15. Digital reconstruction of Young's fringes using Fresnel transformation

    Science.gov (United States)

    Kulenovic, Rudi; Song, Yaozu; Renninger, P.; Groll, Manfred

    1997-11-01

    This paper deals with the digital numerical reconstruction of Young's fringes from laser speckle photography by means of the Fresnel-transformation. The physical model of the optical reconstruction of a specklegram is a near-field Fresnel-diffraction phenomenon which can be mathematically described by the Fresnel-transformation. Therefore, the interference phenomena can be directly calculated by a microcomputer.If additional a CCD-camera is used for specklegram recording the measurement procedure and evaluation process can be completely carried out in a digital way. Compared with conventional laser speckle photography no holographic plates, no wet development process and no optical specklegram reconstruction are needed. These advantages reveal a wide future in scientific and engineering applications. The basic principle of the numerical reconstruction is described, the effects of experimental parameters of Young's fringes are analyzed and representative results are presented.

  16. The Avignon Bridge: a 3d Reconstruction Project Integrating Archaeological, Historical and Gemorphological Issues

    Science.gov (United States)

    Berthelot, M.; Nony, N.; Gugi, L.; Bishop, A.; De Luca, L.

    2015-02-01

    The history and identity of the Avignon's bridge is inseparable from that of the Rhône river. Therefore, in order to share the history and memory of the Rhône, it is essential to get to know this bridge and especially to identify and make visible the traces of its past, its construction, its interaction with the river dynamics, which greatly influenced his life. These are the objectives of the PAVAGE project that focuses on digitally surveying, modelling and re-visiting a heritage site of primary importance with the aim of virtually restoring the link between the two sides which, after the disappearance of the Roman bridge of Arles, constituted for a long time the only connection between Lyon or Vienna and the sea. Therefore, this project has an important geo-historical dimension for which geo-morphological and paleoenvironmental studies were implemented in connection with the latest digital simulation methods exploiting geographic information systems. By integrating knowledge and reflections of archaeologists, historians, geomorphologists, environmentalists, architects, engineers and computer scientists, the result of this project (which involved 5 laboratories during 4 years) is a 3D digital model covering an extension of 50 km2 achieved by integrating satellite imagery, UAV-based acquisitions, terrestrial laser scanning and photogrammetry, etc. Beyond the actions of scientific valorisation concerning the historical and geomorphological dimensions of the project, the results of this work of this interdisciplinary investigation and interpretation of this site are today integrated within a location-based augmented reality application allowing tourists to exploring the virtual reconstruction of the bridge and its environment through tablets inside the portion of territory covered by this project (between Avignon and Villeneuve-lez-Avignon). This paper presents the main aspects of the 3D virtual reconstruction approach.

  17. Geochemical and paleoenvironmental record of the early to early late Aptian major episodes of accelerated change: Evidence from Sierra del Rosario, Northeast Mexico

    Science.gov (United States)

    Núñez-Useche, Fernando; Barragán, Ricardo; Moreno-Bedmar, Josep Anton; Canet, Carles

    2015-07-01

    The lower to lower-upper Aptian succession of northern Mexico documents the drowning of the shallow-water Cupido/Cupidito carbonate platform system followed by deposition of the deep-water sediments of the La Peña Formation. Using δ13C stratigraphy, geochemical and mineralogical information coupled with previous microfacies, paleontological and total organic carbon (TOC) data from a stratigraphic section, which includes such lithological change, this study identifies distinctive episodes of accelerated global environmental change, and determines the paleoenvironmental conditions conducive to the deposition of TOC-rich intervals. Within the Cupidito unit, the Oceanic Anoxic Event 1a (OAE 1a) is recorded near the base of the section and the Intra-Furcata Negative Excursion in the topmost beds of the unit. The upper part of the section, within the La Peña Formation, is correlatable with the Noire level. Organic-carbon rich intervals occur in the lower and middle part of the OAE 1a, upper part of the Cupidito unit, base of the La Peña Formation, and in the Noire level equivalent. Reducing conditions within the sediment and oxic-dysoxic at the seafloor, locally controlled, persisted both before and during OAE 1a interval in the Cupidito lagoon. Oxygen-depleted conditions (dysoxic-anoxic) were more permanent and stronger during the deposition of the base of the la Peña Formation and the Noire equivalent level. It is proposed here that deposition of the lower-middle part of the OAE 1a and the base of the La Peña Formation was influenced by climate-controlled increases in detrital and accompanying nutrient influx that supplied especially biolimiting nutrients (Fe, P), fostering marine productivity and TOC burial. Upwelling of nutrient-rich deeper waters and minor arrival of nutrients from runoff, both account for the domination of radiolaria and organic-carbon burial during the Noire level equivalent. Record of the OAE 1a time-equivalent facies in the Cupidito

  18. Ichnological analysis of the Upper Miocene in the ANH-Tumaco-1-ST-P well: assessing paleoenvironmental conditions at the Tumaco Basin, in the Colombian Pacific

    Science.gov (United States)

    Giraldo-Villegas, Carlos A.; Celis, Sergio A.; Rodríguez-Tovar, Francisco J.; Pardo-Trujillo, Andrés; Vallejo-Hincapié, Diego F.; Trejos-Tamayo, Raúl A.

    2016-11-01

    Tumaco is a frontier basin located on the SW Colombian Pacific coast. It is composed of a thick siliciclastic sequence up to reach 10,000 m-thick. In recent years, the National Hydrocarbon Agency-ANH has promoted new exploration wells in order to understand the sedimentary dynamic and its relationship with petroleum systems. One of them, the ANH-Tumaco-1-ST-P well has ∼3000 m (12,000 feet). We carried out sedimentological, geochemical, and micropaleontological detailed analyses with special attention to the ichnology on a 55 m-cored interval (from 1695.3 to 1640.4 m = 5563-5382 ft) in order to assess paleoenvironmental conditions. Beds are composed of green and gray mudrocks interbedded with lithic sandstones and fine-grained tuffs. Calcareous microfossil assemblages defined by the recovery of Uvigerina carapitana, Uvigerina laviculata, Uvigerina pigmaea, Globigerina woodi, Globigerionoides obliquus, Discoaster bellus gr., Catinaster coalitus, Reticulofenestra pseudoumbilicus and Sphenolithus abies indicated a Tortonian age, between CN6/CN7 biozones. Six sedimentary facies were identified: (1, 2) massive and laminated mudrocks, (3, 4) massive and normal-graded sandstones, (5) heterolithic beds, and in some cases (6) sandstones with soft-deformation structures. These rocks were accumulated in a shallowing platform-prodelta environment with continuous volcanic influence. Ichnotaxonomic analysis, conducted for the first time in the Colombian Pacific, allowed the identification of eighteen ichnogenera: Alcyonidiopsis, Asterosoma, Chondrites, Conichnus, Cylindrichnus, Diplocraterion, Ophiomorpha, Palaeophycus, Phycosiphon, Planolites, Rhyzocorallium, Schaubcylindrichnus, Scolicia, Siphonichnus, Taeinidum, Teichichnus, Thalassinoides, and Zoophycos. The ichnological association belongs to the archetypal Cruziana ichnofacies and its "distal" expression. By integrating lithofacies and ichnological results, two segments have been distinguished: 1) the lower one (1695

  19. Optimal reconstruction angles

    International Nuclear Information System (INIS)

    Cook, G.O. Jr.; Knight, L.

    1979-07-01

    The question of optimal projection angles has recently become of interest in the field of reconstruction from projections. Here, studies are concentrated on the n x n pixel space, where literative algorithms such as ART and direct matrix techniques due to Katz are considered. The best angles are determined in a Gauss--Markov statistical sense as well as with respect to a function-theoretical error bound. The possibility of making photon intensity a function of angle is also examined. Finally, the best angles to use in an ART-like algorithm are studied. A certain set of unequally spaced angles was found to be preferred in several contexts. 15 figures, 6 tables

  20. CRUCIATE LIGAMENT RECONSTRUCTION

    Directory of Open Access Journals (Sweden)

    A. V. Korolev

    2016-01-01

    Full Text Available Purpose: To evaluate long-term results of meniscal repair during arthroscopic ACL reconstruction.Materials and methods: 45 patients who underwent meniscal repair during arthroscopic ACL reconstruction between 2007 and 2013 by the same surgeon were included in the study. In total, fifty meniscus were repaired (26 medial and 24 lateral. Procedures included use of one up to four Fast-Fix implants (Smith & Nephew. In five cases both medial and lateral meniscus were repaired. Cincinnati, IKDC and Lysholm scales were used for long-term outcome analysis.Results: 19 male and 26 female patients were included in the study aging from 15 to 59 years (mean age 33,2±1,5. Median time from injury to surgical procedure was zero months (ranging zero to one. Mean time from surgery to scale analysis was 55,9±3 months (ranged 20-102. Median Cincinnati score was 97 (ranged 90-100, with excellent results in 93% of cases (43 patients and good results in 7% (3 patients. Median IKDC score was 90,8 (ranged 86,2-95,4, with excellent outcomes in 51% of cases (23 patients, good in 33% (15 patients and satisfactory in 16% (7 patients. Median Lysholm score was 95 (ranged 90-100, with excellent outcomes in 76% of cases (34 patients and good in 24% (11 patients. Authors identified no statistical differences when comparing survey results in age, sex and time from trauma to surgery.Conclusions: Results of the present study match the data from orthopedic literature that prove meniscal repair as a safe and efficient procedure with good and excellent outcomes. All-inside meniscal repair can be used irrespectively of patients' age and is efficient even in case of delayed procedures.

  1. Reconstruction of electric systems (ELE)

    International Nuclear Information System (INIS)

    Kohutovic, P.

    2001-01-01

    The original design of WWER-230 units consisted of a single common system EEPS (essential electric power supply system) per unit. The establishment of redundancy 2 x 100% EEPS was a global task. The task was started during the 'Small reconstruction' - MR V1, continued in 'Gradual reconstruction' and finished in the year 2000. (author)

  2. Breast Reconstruction Following Cancer Treatment.

    Science.gov (United States)

    Gerber, Bernd; Marx, Mario; Untch, Michael; Faridi, Andree

    2015-08-31

    About 8000 breast reconstructions after mastectomy are per - formed in Germany each year. It has become more difficult to advise patients because of the wide variety of heterologous and autologous techniques that are now available and because of changes in the recommendations about radiotherapy. This article is based on a review of pertinent articles (2005-2014) that were retrieved by a selective search employing the search terms "mastectomy" and "breast reconstruction." The goal of reconstruction is to achieve an oncologically safe and aestically satisfactory result for the patient over the long term. Heterologous, i.e., implant-based, breast reconstruction (IBR) and autologous breast reconstruction (ABR) are complementary techniques. Immediate reconstruction preserves the skin of the breast and its natural form and prevents the psychological trauma associated with mastectomy. If post-mastectomy radiotherapy (PMRT) is not indicated, implant-based reconstruction with or without a net/acellular dermal matrix (ADM) is a common option. Complications such as seroma formation, infection, and explantation are significantly more common when an ADM is used (15.3% vs. 5.4% ). If PMRT is performed, then the complication rate of implant-based breast reconstruction is 1 to 48% ; in particular, Baker grade III/IV capsular fibrosis occurs in 7 to 22% of patients, and the prosthesis must be explanted in 9 to 41% . Primary or, preferably, secondary autologous reconstruction is an alternative. The results of ABR are more stable over the long term, but the operation is markedly more complex. Autologous breast reconstruction after PMRT does not increase the risk of serious complications (20.5% vs. 17.9% without radiotherapy). No randomized controlled trials have yet been conducted to compare the reconstructive techniques with each other. If radiotherapy will not be performed, immediate reconstruction with an implant is recommended. On the other hand, if post-mastectomy radiotherapy

  3. Subjective versus objective assessment of breast reconstruction.

    Science.gov (United States)

    Henseler, Helga; Smith, Joanna; Bowman, Adrian; Khambay, Balvinder S; Ju, Xiangyang; Ayoub, Ashraf; Ray, Arup K

    2013-05-01

    To date breast assessment has been conducted mainly subjectively. However lately validated objective three-dimensional (3D) imaging was developed. The study aimed to assess breast reconstruction subjectively and objectively and conduct a comparison. In forty-four patients after immediate unilateral breast reconstruction with solely the extended latissimus dorsi flap the breast was captured by validated 3D imaging method and standardized 2D photography. Breast symmetry was subjectively evaluated by six experts who applied the Harris score giving a mark of 1-4 for a poor to excellent result. An error study was conducted by examination of the intra and inter-observer agreement and agreement on controls. By Procrustes analysis an objective asymmetry score was obtained and compared to the subjective assessment. The subjective assessment showed that the inter-observer agreement was good or substantial (p-value: value: fair (p-values: 0.159, 0.134, 0.099) to substantial (p-value: 0.005) intra-observer agreement. The objective assessment revealed that the reconstructed breast showed a significantly smaller volume compared to the opposite side and that the average asymmetry score was 0.052, ranging from 0.019 to 0.136. When comparing the subjective and objective method the relationship between the two scores was highly significant. Subjective breast assessment lacked accuracy and reproducibility. This was the first error study of subjective breast assessment versus an objective validated 3D imaging method based on true 3D parameters. The substantial agreement between established subjective breast assessment and new validated objective method supported the value of the later and we expect its future role to expand. Copyright © 2013 British Association of Plastic, Reconstructive and Aesthetic Surgeons. Published by Elsevier Ltd. All rights reserved.

  4. Weak lensing galaxy cluster field reconstruction

    Science.gov (United States)

    Jullo, E.; Pires, S.; Jauzac, M.; Kneib, J.-P.

    2014-02-01

    In this paper, we compare three methods to reconstruct galaxy cluster density fields with weak lensing data. The first method called FLens integrates an inpainting concept to invert the shear field with possible gaps, and a multi-scale entropy denoising procedure to remove the noise contained in the final reconstruction, that arises mostly from the random intrinsic shape of the galaxies. The second and third methods are based on a model of the density field made of a multi-scale grid of radial basis functions. In one case, the model parameters are computed with a linear inversion involving a singular value decomposition (SVD). In the other case, the model parameters are estimated using a Bayesian Monte Carlo Markov Chain optimization implemented in the lensing software LENSTOOL. Methods are compared on simulated data with varying galaxy density fields. We pay particular attention to the errors estimated with resampling. We find the multi-scale grid model optimized with Monte Carlo Markov Chain to provide the best results, but at high computational cost, especially when considering resampling. The SVD method is much faster but yields noisy maps, although this can be mitigated with resampling. The FLens method is a good compromise with fast computation, high signal-to-noise ratio reconstruction, but lower resolution maps. All three methods are applied to the MACS J0717+3745 galaxy cluster field, and reveal the filamentary structure discovered in Jauzac et al. We conclude that sensitive priors can help to get high signal-to-noise ratio, and unbiased reconstructions.

  5. A new abdominal wall reconstruction strategy for giant omphalocele

    Directory of Open Access Journals (Sweden)

    Yoshiaki Takahashi

    2018-04-01

    Full Text Available The mortality rate of giant omphalocele has improved; however long-term follow-up has revealed umbilical defects and deformities after primary closure. We herein report the efficacy of a new abdominal wall reconstruction strategy combining a component separation technique with delayed natural and deep umbilicoplasty. Keywords: Giant omphalocele, Component separation technique, Delayed natural and deep umbilicoplasty, Abdominal wall defect

  6. Chemical composition of modern and fossil hippopotamid teeth and implications for paleoenvironmental reconstructions and enamel formation – Part 2: Alkaline earth elements as tracers of watershed hydrochemistry and provenance

    Directory of Open Access Journals (Sweden)

    I. Ssemmanda

    2012-11-01

    Full Text Available This study demonstrates that alkaline earth elements in enamel of hippopotamids, in particular Ba and Sr, are tracers for water provenance and hydrochemistry in terrestrial settings. The studied specimens are permanent premolar and molar teeth found in modern and fossil lacustrine sediments of the Western Branch of the East African Rift system (Lake Kikorongo, Lake Albert, and Lake Malawi and from modern fluvial environments of the Nile River. Concentrations in enamel vary by two orders of magnitude for Ba (120–9336 μg g−1 as well as for Sr (9–2150 μg g−1. The variations are partially induced during post-mortem alteration and during amelogenesis, but the major contribution originates ultimately from the variable water chemistry in the habitats of the hippopotamids which is controlled by the lithologies and weathering processes in the watershed areas. Amelogenesis causes a distinct distribution of MgO, Ba and Sr in modern and fossil enamel, in that element concentrations increase along profiles from the outer rim towards the enamel–dentin junction by a factor of 1.3–1.9. These elements are well correlated in single specimens, thus suggesting that their distribution is determined by a common, single process, which can be described by closed system Rayleigh crystallization of bioapatite in vivo. Enamel from most hippopotamid specimens has Sr/Ca and Ba/Ca which are typical for herbivores. However, Ba/Sr ranges from 0.1 to 3 and varies on spatial and temporal scales. Thus, Sr concentrations and Ba/Sr in enamel differentiate between habitats having basaltic mantle rocks or Archean crustal rocks as the ultimate sources of Sr and Ba. This provenance signal is modulated by climate change. In Miocene to Pleistocene enamel from the Lake Albert region, Ba/Sr decreases systematically with time from 2 to 0.5. This trend can be correlated with changes in climate from humid to arid, in vegetation from C3 to C4 biomass as well as with increasing evaporation of the lake water. The most plausible explanation is that Ba mobility decreased with increasing aridification due to preferential deposition with clay and Fe-oxide-hydroxide or barite on the watershed of Lake Albert.

  7. Fast Dictionary-Based Reconstruction for Diffusion Spectrum Imaging

    Science.gov (United States)

    Bilgic, Berkin; Chatnuntawech, Itthi; Setsompop, Kawin; Cauley, Stephen F.; Yendiki, Anastasia; Wald, Lawrence L.; Adalsteinsson, Elfar

    2015-01-01

    Diffusion Spectrum Imaging (DSI) reveals detailed local diffusion properties at the expense of substantially long imaging times. It is possible to accelerate acquisition by undersampling in q-space, followed by image reconstruction that exploits prior knowledge on the diffusion probability density functions (pdfs). Previously proposed methods impose this prior in the form of sparsity under wavelet and total variation (TV) transforms, or under adaptive dictionaries that are trained on example datasets to maximize the sparsity of the representation. These compressed sensing (CS) methods require full-brain processing times on the order of hours using Matlab running on a workstation. This work presents two dictionary-based reconstruction techniques that use analytical solutions, and are two orders of magnitude faster than the previously proposed dictionary-based CS approach. The first method generates a dictionary from the training data using Principal Component Analysis (PCA), and performs the reconstruction in the PCA space. The second proposed method applies reconstruction using pseudoinverse with Tikhonov regularization with respect to a dictionary. This dictionary can either be obtained using the K-SVD algorithm, or it can simply be the training dataset of pdfs without any training. All of the proposed methods achieve reconstruction times on the order of seconds per imaging slice, and have reconstruction quality comparable to that of dictionary-based CS algorithm. PMID:23846466

  8. Fast dictionary-based reconstruction for diffusion spectrum imaging.

    Science.gov (United States)

    Bilgic, Berkin; Chatnuntawech, Itthi; Setsompop, Kawin; Cauley, Stephen F; Yendiki, Anastasia; Wald, Lawrence L; Adalsteinsson, Elfar

    2013-11-01

    Diffusion spectrum imaging reveals detailed local diffusion properties at the expense of substantially long imaging times. It is possible to accelerate acquisition by undersampling in q-space, followed by image reconstruction that exploits prior knowledge on the diffusion probability density functions (pdfs). Previously proposed methods impose this prior in the form of sparsity under wavelet and total variation transforms, or under adaptive dictionaries that are trained on example datasets to maximize the sparsity of the representation. These compressed sensing (CS) methods require full-brain processing times on the order of hours using MATLAB running on a workstation. This work presents two dictionary-based reconstruction techniques that use analytical solutions, and are two orders of magnitude faster than the previously proposed dictionary-based CS approach. The first method generates a dictionary from the training data using principal component analysis (PCA), and performs the reconstruction in the PCA space. The second proposed method applies reconstruction using pseudoinverse with Tikhonov regularization with respect to a dictionary. This dictionary can either be obtained using the K-SVD algorithm, or it can simply be the training dataset of pdfs without any training. All of the proposed methods achieve reconstruction times on the order of seconds per imaging slice, and have reconstruction quality comparable to that of dictionary-based CS algorithm.

  9. Free flap reconstruction for diabetic foot limb salvage.

    Science.gov (United States)

    Sato, Tomoya; Yana, Yuichiro; Ichioka, Shigeru

    2017-12-01

    Although free flap is gaining popularity for the reconstruction of diabetic foot ulcers, it is unclear whether free flap reconstruction increases the chances of postoperative independent ambulation. The aim of this study is to evaluate the relationship between free flap success and postoperative ambulation. This study reviewed 23 cases of free flap reconstruction for diabetic foot ulcers between January 2007 and March 2014. Free rectus abdominis, latissimus dorsi, and anterolateral thigh flaps were used in ten, eight, and five patients, respectively. A comparison was made between free flap success and postoperative independent ambulation using Fisher's exact test. Two patients developed congestive heart failure with fatal consequences within 14 days postoperatively, resulting in an in-hospital mortality rate of 8.7%. Five patients lost their flaps (21.7%). Of the 16 patients who had flap success, 12 achieved independent ambulation. Five patients with flap loss did not achieve independent ambulation, except one patient who underwent secondary flap reconstruction using a distally based sural flap. Fisher's exact test revealed that independent ambulation was associated with free flap success (p = 0.047). The present study indicates that free flap reconstruction may increase the possibility of independent ambulation for patients with extensive tissue defects due to diabetic ulcers. Intermediate limb salvage rates and independent ambulation rates were favourable in patients with successful reconstruction. The use of foot orthoses and a team approach with pedorthists were effective to prevent recurrence.

  10. Higher order total variation regularization for EIT reconstruction.

    Science.gov (United States)

    Gong, Bo; Schullcke, Benjamin; Krueger-Ziolek, Sabine; Zhang, Fan; Mueller-Lisse, Ullrich; Moeller, Knut

    2018-01-08

    Electrical impedance tomography (EIT) attempts to reveal the conductivity distribution of a domain based on the electrical boundary condition. This is an ill-posed inverse problem; its solution is very unstable. Total variation (TV) regularization is one of the techniques commonly employed to stabilize reconstructions. However, it is well known that TV regularization induces staircase effects, which are not realistic in clinical applications. To reduce such artifacts, modified TV regularization terms considering a higher order differential operator were developed in several previous studies. One of them is called total generalized variation (TGV) regularization. TGV regularization has been successively applied in image processing in a regular grid context. In this study, we adapted TGV regularization to the finite element model (FEM) framework for EIT reconstruction. Reconstructions using simulation and clinical data were performed. First results indicate that, in comparison to TV regularization, TGV regularization promotes more realistic images. Graphical abstract Reconstructed conductivity changes located on selected vertical lines. For each of the reconstructed images as well as the ground truth image, conductivity changes located along the selected left and right vertical lines are plotted. In these plots, the notation GT in the legend stands for ground truth, TV stands for total variation method, and TGV stands for total generalized variation method. Reconstructed conductivity distributions from the GREIT algorithm are also demonstrated.

  11. Evidence-Based ACL Reconstruction

    Directory of Open Access Journals (Sweden)

    E. Carlos RODRIGUEZ-MERCHAN

    2015-01-01

    Full Text Available There is controversy in the literature regarding a number of topics related to anterior cruciate ligament (ACLreconstruction. The purpose of this article is to answer the following questions: 1 Bone patellar tendon bone (BPTB reconstruction or hamstring reconstruction (HR; 2 Double bundle or single bundle; 3 Allograft or authograft; 4 Early or late reconstruction; 5 Rate of return to sports after ACL reconstruction; 6 Rate of osteoarthritis after ACL reconstruction. A Cochrane Library and PubMed (MEDLINE search of systematic reviews and meta-analysis related to ACL reconstruction was performed. The key words were: ACL reconstruction, systematic reviews and meta-analysis. The main criteria for selection were that the articles were systematic reviews and meta-analysesfocused on the aforementioned questions. Sixty-nine articles were found, but only 26 were selected and reviewed because they had a high grade (I-II of evidence. BPTB-R was associated with better postoperative knee stability but with a higher rate of morbidity. However, the results of both procedures in terms of functional outcome in the long-term were similar. The double-bundle ACL reconstruction technique showed better outcomes in rotational laxity, although functional recovery was similar between single-bundle and double-bundle. Autograft yielded better results than allograft. There was no difference between early and delayed reconstruction. 82% of patients were able to return to some kind of sport participation. 28% of patients presented radiological signs of osteoarthritis with a follow-up of minimum 10 years.

  12. Reconstructing human evolution

    CERN Multimedia

    AUTHOR|(CDS)2074069

    1999-01-01

    One can reconstruct human evolution using modern genetic data and models based on the mathematical theory of evolution and its four major factors : mutation, natural selection, statistical fluctuations in finite populations (random genetic drift), and migration. Archaeology gives some help on the major dates and events of the process. Chances of studying ancient DNA are very limited but there have been a few successful results. Studying DNA instead of proteins, as was done until a few years ago, and in particular the DNA of mitochondria and of the Y chromosome which are transmitted, respectively, by the maternal line and the paternal line, has greatly simplified the analysis. It is now possible to carry the analysis on individuals, while earlier studies were of necessity based on populations. Also the evolution of ÒcultureÓ (i.e. what we learn from others), in particular that of languages, gives some help and can be greatly enlightened by genetic studies. Even though it is largely based on mechanisms of mut...

  13. Reconstructing Holocene temperature and salinity variations in the western Baltic Sea region: a multi-proxy comparison from the Little Belt (IODP Expedition 347, Site M0059)

    Science.gov (United States)

    Kotthoff, Ulrich; Groeneveld, Jeroen; Ash, Jeanine L.; Fanget, Anne-Sophie; Quintana Krupinski, Nadine; Peyron, Odile; Stepanova, Anna; Warnock, Jonathan; Van Helmond, Niels A. G. M.; Passey, Benjamin H.; Rønø Clausen, Ole; Bennike, Ole; Andrén, Elinor; Granoszewski, Wojciech; Andrén, Thomas; Filipsson, Helena L.; Seidenkrantz, Marit-Solveig; Slomp, Caroline P.; Bauersachs, Thorsten

    2017-12-01

    Sediment records recovered from the Baltic Sea during Integrated Ocean Drilling Program Expedition 347 provide a unique opportunity to study paleoenvironmental and climate change in central and northern Europe. Such studies contribute to a better understanding of how environmental parameters change in continental shelf seas and enclosed basins. Here we present a multi-proxy-based reconstruction of paleotemperature (both marine and terrestrial), paleosalinity, and paleoecosystem changes from the Little Belt (Site M0059) over the past ˜ 8000 years and evaluate the applicability of inorganic- and organic-based proxies in this particular setting. All salinity proxies (diatoms, aquatic palynomorphs, ostracods, diol index) show that lacustrine conditions occurred in the Little Belt until ˜ 7400 cal yr BP. A connection to the Kattegat at this time can thus be excluded, but a direct connection to the Baltic Proper may have existed. The transition to the brackish-marine conditions of the Littorina Sea stage (more saline and warmer) occurred within ˜ 200 years when the connection to the Kattegat became established after ˜ 7400 cal yr BP. The different salinity proxies used here generally show similar trends in relative changes in salinity, but often do not allow quantitative estimates of salinity. The reconstruction of water temperatures is associated with particularly large uncertainties and variations in absolute values by up to 8 °C for bottom waters and up to 16 °C for surface waters. Concerning the reconstruction of temperature using foraminiferal Mg  /  Ca ratios, contamination by authigenic coatings in the deeper intervals may have led to an overestimation of temperatures. Differences in results based on the lipid paleothermometers (long chain diol index and TEXL86) can partly be explained by the application of modern-day proxy calibrations to intervals that experienced significant changes in depositional settings: in the case of our study, the change from

  14. Reconstructing Topological Graphs and Continua

    OpenAIRE

    Gartside, Paul; Pitz, Max F.; Suabedissen, Rolf

    2015-01-01

    The deck of a topological space $X$ is the set $\\mathcal{D}(X)=\\{[X \\setminus \\{x\\}] \\colon x \\in X\\}$, where $[Z]$ denotes the homeomorphism class of $Z$. A space $X$ is topologically reconstructible if whenever $\\mathcal{D}(X)=\\mathcal{D}(Y)$ then $X$ is homeomorphic to $Y$. It is shown that all metrizable compact connected spaces are reconstructible. It follows that all finite graphs, when viewed as a 1-dimensional cell-complex, are reconstructible in the topological sense, and more genera...

  15. Tomographic reconstruction of binary fields

    International Nuclear Information System (INIS)

    Roux, Stéphane; Leclerc, Hugo; Hild, François

    2012-01-01

    A novel algorithm is proposed for reconstructing binary images from their projection along a set of different orientations. Based on a nonlinear transformation of the projection data, classical back-projection procedures can be used iteratively to converge to the sought image. A multiscale implementation allows for a faster convergence. The algorithm is tested on images up to 1 Mb definition, and an error free reconstruction is achieved with a very limited number of projection data, saving a factor of about 100 on the number of projections required for classical reconstruction algorithms.

  16. [Pedicled versus free TRAM flap for breast reconstruction].

    Science.gov (United States)

    Galla, T J; Lukas, B; Feller, A M

    1999-03-01

    In breast reconstruction, the free TRAM-flap offers many advantages over the pedicled TRAM-flap. Due to its superior perfusion, the free flap rarely develops necrosis. Shaping of the flap is easier due to the lack of the thick muscle pedicle. Because the rectus muscle is spared, there is minimal donor site morbidity. However, the necessary microvascular anastomoses reduced the acceptance of the free TRAM-flap. During a 13-months period, 51 breast reconstructions were performed in 41 patients, 31 unilateral and ten bilateral. 45 flaps served for delayed reconstruction and six flaps for immediate reconstruction. The operations were performed by two teams working simultaneously. The average operating time was 3.9 hours for unilateral and 6.9 hours for bilateral delayed reconstruction. For immediate reconstruction, 6.2 and 6.3 hours were required for uni- and bilateral procedures, respectively. In 38 flaps, the thoracodorsal vessels served as recipient vessels; 13 flaps were anastomosed to the internal mammary artery and vein. Postoperative complications were observed in 13 patients. Three vessel anastomoses had to be revised. In one flap, a partial necrosis occurred; in two flaps hematoma evacuation was necessary. Two patients suffered from fat necroses at the abdomen and one umbilicus was lost. Skin irritations and seromas at the abdomen occurred in five patients. Pulmonary embolism was diagnosed in one patient three weeks postoperatively. Abdominal hernias or bulging in the epigastric area were not observed up to 15 months after reconstruction. These results reveal a low complication rate for breast reconstruction with the free TRAM-flap. The advantages of this technique as compared to the pedicled technique are discussed.

  17. Impact of Reconstruction Algorithms on CT Radiomic Features of Pulmonary Tumors: Analysis of Intra- and Inter-Reader Variability and Inter-Reconstruction Algorithm Variability.

    Science.gov (United States)

    Kim, Hyungjin; Park, Chang Min; Lee, Myunghee; Park, Sang Joon; Song, Yong Sub; Lee, Jong Hyuk; Hwang, Eui Jin; Goo, Jin Mo

    2016-01-01

    To identify the impact of reconstruction algorithms on CT radiomic features of pulmonary tumors and to reveal and compare the intra- and inter-reader and inter-reconstruction algorithm variability of each feature. Forty-two patients (M:F = 19:23; mean age, 60.43±10.56 years) with 42 pulmonary tumors (22.56±8.51mm) underwent contrast-enhanced CT scans, which were reconstructed with filtered back projection and commercial iterative reconstruction algorithm (level 3 and 5). Two readers independently segmented the whole tumor volume. Fifteen radiomic features were extracted and compared among reconstruction algorithms. Intra- and inter-reader variability and inter-reconstruction algorithm variability were calculated using coefficients of variation (CVs) and then compared. Among the 15 features, 5 first-order tumor intensity features and 4 gray level co-occurrence matrix (GLCM)-based features showed significant differences (palgorithms. As for the variability, effective diameter, sphericity, entropy, and GLCM entropy were the most robust features (CV≤5%). Inter-reader variability was larger than intra-reader or inter-reconstruction algorithm variability in 9 features. However, for entropy, homogeneity, and 4 GLCM-based features, inter-reconstruction algorithm variability was significantly greater than inter-reader variability (palgorithms. Inter-reconstruction algorithm variability was greater than inter-reader variability for entropy, homogeneity, and GLCM-based features.

  18. Paleoenvironmental evolution and geomorphic dynamics recorded in the Homo-bearing Pleistocene stratigraphic succession of Aalat (Eritrea, East Africa): A pedological perspective

    Science.gov (United States)

    Scarciglia, Fabio; Mercatante, Giuseppe; Donato, Paola; Ghinassi, Massimiliano; Carnevale, Giorgio; Delfino, Massimo; Oms, Oriol; Papini, Mauro; Pavia, Marco; Sani, Federico; Rook, Lorenzo

    2017-04-01

    these cemented horizons with layers affected by local to extensive staining of the matrix with reddish to yellowish iron-oxides/hydroxides, suggests cyclical changes from dry to wet environmental conditions. This pattern is quite consistent with the main Pleistocene climate oscillations evidenced in global-scale paleoclimatic curves, where glacial/interglacial cycles of higher latitudes well correspond to the formation of carbonate- or gypsum-cemented and the iron-stained layers, respectively. In addition, some carbonate parent material enhancing secondary carbonate dynamics within the soil system, dominated by siliciclastic grains sourced from the metamorphic basement rocks prevailing in the Dandiero basin, could have been supplied as eolian dust during dryer (glacial) periods. A comparison of the different evolutionary (maturity-related) stages of calcic/petrocalcic and petrogypsic horizons of the chronologically well-constrained Aalat succession suggests that their time ranges of development were between 102 - 103 years and a few tens of thousands years. Further investigations are required to assess the potential role of paleoenvironmental changes recorded in the Dandiero basin fill on human settlement, dispersal and evolution in East Africa during the Early-Middle Pleistocene transition.

  19. Study of DNA reconstruction enzymes

    Energy Technology Data Exchange (ETDEWEB)

    Sekiguchi, M [Kyushu Univ., Fukuoka (Japan). Faculty of Science

    1976-12-01

    Description was made of the characteristics and mechanism of 3 reconstructive enzymes which received from M. luteus or E. coli or T4, and of which natures were clarified as reconstructive enzymes of DNA irradiated with ultraviolet rays. As characteristics, the site of breaking, reaction, molecular weight, electric charge in the neutrality and a specific adhesion to DNA irradiated with ultraviolet rays were mentioned. As to mutant of ultraviolet ray sensitivity, hereditary control mechanism of removal and reconstruction by endo-nuclease activation was described, and suggestion was referred to removal and reconstruction of cells of xedoderma pigmentosum which is a hereditary disease of human. Description was also made as to the mechanism of exonuclease activation which separates dimer selectively from irradiated DNA.

  20. Quantum Logic and Quantum Reconstruction

    OpenAIRE

    Stairs, Allen

    2015-01-01

    Quantum logic understood as a reconstruction program had real successes and genuine limitations. This paper offers a synopsis of both and suggests a way of seeing quantum logic in a larger, still thriving context.

  1. Reconstructing see-saw models

    International Nuclear Information System (INIS)

    Ibarra, Alejandro

    2007-01-01

    In this talk we discuss the prospects to reconstruct the high-energy see-saw Lagrangian from low energy experiments in supersymmetric scenarios. We show that the model with three right-handed neutrinos could be reconstructed in theory, but not in practice. Then, we discuss the prospects to reconstruct the model with two right-handed neutrinos, which is the minimal see-saw model able to accommodate neutrino observations. We identify the relevant processes to achieve this goal, and comment on the sensitivity of future experiments to them. We find the prospects much more promising and we emphasize in particular the importance of the observation of rare leptonic decays for the reconstruction of the right-handed neutrino masses

  2. Breast Reconstruction with Flap Surgery

    Science.gov (United States)

    ... augmented with a breast implant to achieve the desired breast size. Surgical methods Autologous tissue breast reconstruction ... as long as a year or two before feeling completely healed and back to normal. Future breast ...

  3. Rational reconstructions of modern physics

    CERN Document Server

    Mittelstaedt, Peter

    2013-01-01

    Newton’s classical physics and its underlying ontology are loaded with several metaphysical hypotheses that cannot be justified by rational reasoning nor by experimental evidence. Furthermore, it is well known that some of these hypotheses are not contained in the great theories of Modern Physics, such as the theory of Special Relativity and Quantum Mechanics. This book shows that, on the basis of Newton’s classical physics and by rational reconstruction, the theory of Special Relativity as well as Quantum Mechanics can be obtained by partly eliminating or attenuating the metaphysical hypotheses. Moreover, it is shown that these reconstructions do not require additional hypotheses or new experimental results. In the second edition the rational reconstructions are completed with respect to General Relativity and Cosmology. In addition, the statistics of quantum objects is elaborated in more detail with respect to the rational reconstruction of quantum mechanics. The new material completes the approach of t...

  4. Signal process and profile reconstruction of stress corrosion crack by eddy current test

    International Nuclear Information System (INIS)

    Zhang Siquan; Chen Tiequn; Liu Guixiong

    2008-01-01

    The reconstruction of crack profiles is very important in the NDE (nondestructive evaluation) of critical structures, such as pressure vessel and tubes in heat exchangers. First a wavelet transform signal processing technique is used to reduce noise and other non-defect signals from the signals of crack, and then based on an artificial neural network method, the crack profiles are reconstructed. Although the results reveal that this method is with many advantages such as a short CPU time and precision for reconstruction,it does have some drawbacks, for example, the database generation and network training is a much time consuming work. Moreover, this approach does not expressly reconstruct the distribution of conductivity inside a crack, so the reliability of a reconstructed crack shape is unknown. But in practical application, if we do not consider the multiple cracks, this method can be used to reconstruct the natural crack. (authors)

  5. Petz recovery versus matrix reconstruction

    Science.gov (United States)

    Holzäpfel, Milan; Cramer, Marcus; Datta, Nilanjana; Plenio, Martin B.

    2018-04-01

    The reconstruction of the state of a multipartite quantum mechanical system represents a fundamental task in quantum information science. At its most basic, it concerns a state of a bipartite quantum system whose subsystems are subjected to local operations. We compare two different methods for obtaining the original state from the state resulting from the action of these operations. The first method involves quantum operations called Petz recovery maps, acting locally on the two subsystems. The second method is called matrix (or state) reconstruction and involves local, linear maps that are not necessarily completely positive. Moreover, we compare the quantities on which the maps employed in the two methods depend. We show that any state that admits Petz recovery also admits state reconstruction. However, the latter is successful for a strictly larger set of states. We also compare these methods in the context of a finite spin chain. Here, the state of a finite spin chain is reconstructed from the reduced states of a few neighbouring spins. In this setting, state reconstruction is the same as the matrix product operator reconstruction proposed by Baumgratz et al. [Phys. Rev. Lett. 111, 020401 (2013)]. Finally, we generalize both these methods so that they employ long-range measurements instead of relying solely on short-range correlations embodied in such local reduced states. Long-range measurements enable the reconstruction of states which cannot be reconstructed from measurements of local few-body observables alone and hereby we improve existing methods for quantum state tomography of quantum many-body systems.

  6. Animated Reconstruction of Forensic Animation

    OpenAIRE

    Hala, Albert; Unver, Ertu

    1998-01-01

    An animated accident display in court can be significant evidentiary tool. Computer graphics animation reconstructions which can be shown in court are cost effective, save valuable time and illustrate complex and technical issues, are realistic and can prove or disprove arguments or theories with reference to the perplexing newtonian physics involved in many accidents: this technology may well revolutionise accident reconstruction, thus enabling prosecution and defence to be more effective in...

  7. Equilibrium Reconstruction in EAST Tokamak

    International Nuclear Information System (INIS)

    Qian Jinping; Wan Baonian; Shen Biao; Sun Youwen; Liu Dongmei; Xiao Bingjia; Ren Qilong; Gong Xianzu; Li Jiangang; Lao, L. L.; Sabbagh, S. A.

    2009-01-01

    Reconstruction of experimental axisymmetric equilibria is an important part of tokamak data analysis. Fourier expansion is applied to reconstruct the vessel current distribution in EFIT code. Benchmarking and testing calculations are performed to evaluate and validate this algorithm. Two cases for circular and non-circular plasma discharges are presented. Fourier expansion used to fit the eddy current is a robust method and the real time EFIT can be introduced to the plasma control system in the coming campaign. (magnetically confined plasma)

  8. Epitaxial graphene-encapsulated surface reconstruction of Ge(110)

    Science.gov (United States)

    Campbell, Gavin P.; Kiraly, Brian; Jacobberger, Robert M.; Mannix, Andrew J.; Arnold, Michael S.; Hersam, Mark C.; Guisinger, Nathan P.; Bedzyk, Michael J.

    2018-04-01

    Understanding and engineering the properties of crystalline surfaces has been critical in achieving functional electronics at the nanoscale. Employing scanning tunneling microscopy, surface x-ray diffraction, and high-resolution x-ray reflectivity experiments, we present a thorough study of epitaxial graphene (EG)/Ge(110) and report a Ge(110) "6 × 2" reconstruction stabilized by the presence of epitaxial graphene unseen in group-IV semiconductor surfaces. X-ray studies reveal that graphene resides atop the surface reconstruction with a 0.34 nm van der Waals (vdW) gap and provides protection from ambient degradation.

  9. Secondary reconstruction of maxillofacial trauma.

    Science.gov (United States)

    Castro-Núñez, Jaime; Van Sickels, Joseph E

    2017-08-01

    Craniomaxillofacial trauma is one of the most complex clinical conditions in contemporary maxillofacial surgery. Vital structures and possible functional and esthetic sequelae are important considerations following this type of trauma and intervention. Despite the best efforts of the primary surgery, there are a group of patients that will have poor outcomes requiring secondary reconstruction to restore form and function. The purpose of this study is to review current concepts on secondary reconstruction to the maxillofacial complex. The evaluation of a posttraumatic patient for a secondary reconstruction must include an assessment of the different subunits of the upper face, middle face, and lower face. Virtual surgical planning and surgical guides represent the most important innovations in secondary reconstruction over the past few years. Intraoperative navigational surgery/computed-assisted navigation is used in complex cases. Facial asymmetry can be corrected or significantly improved by segmentation of the computerized tomography dataset and mirroring of the unaffected side by means of virtual surgical planning. Navigational surgery/computed-assisted navigation allows for a more precise surgical correction when secondary reconstruction involves the replacement of extensive anatomical areas. The use of technology can result in custom-made replacements and prebent plates, which are more stable and resistant to fracture because of metal fatigue. Careful perioperative evaluation is the key to positive outcomes of secondary reconstruction after trauma. The advent of technological tools has played a capital role in helping the surgical team perform a given treatment plan in a more precise and predictable manner.

  10. Technical basis for dose reconstruction

    International Nuclear Information System (INIS)

    Anspaugh, L.R.

    1996-01-01

    The purpose of this paper is to consider two general topics: Technical considerations of why dose-reconstruction studies should or should not be performed and methods of dose reconstruction. The first topic is of general and growing interest as the number of dose-reconstruction studies increases, and one asks the question whether it is necessary to perform a dose reconstruction for virtually every site at which, for example, the Department of Energy (DOE) has operated a nuclear-related facility. And there is the broader question of how one might logically draw the line at performing or not performing dose-reconstruction (radiological and chemical) studies for virtually every industrial complex in the entire country. The second question is also of general interest. There is no single correct way to perform a dose-reconstruction study, and it is important not to follow blindly a single method to the point that cheaper, faster, more accurate, and more transparent methods might not be developed and applied. 90 refs., 4 tabs

  11. Technical basis for dose reconstruction

    International Nuclear Information System (INIS)

    Anspaugh, L.R.

    1996-01-01

    The purpose of this paper is to consider two general topics: technical considerations of why dose-reconstruction studies should or should not be performed and methods of dose reconstruction. The first topic is of general and growing interest as the number of dose-reconstruction studies increases, and one asks the question whether it is necessary to perform a dose reconstruction for virtually every site at which, for example, the Department of Energy (DOE) has operated a nuclear-related facility. And there is the broader question of how one might logically draw the line at performing or not performing dose-reconstruction (radiological and chemical) studies for virtually every industrial complex in the entire country. The second question is also of general interest. There is no single correct way to perform a dose-reconstruction study, and it is important not to follow blindly a single method to the point that cheaper, faster, more accurate, and more transparent methods might not be developed and applied

  12. The Representativeness of Olea Pollen from Olive Groves and the Late Holocene Landscape Reconstruction in Central Mediterranean

    Directory of Open Access Journals (Sweden)

    Assunta Florenzano

    2017-10-01

    Full Text Available Modern pollen spectra are an invaluable reference tool for paleoenvironmental and cultural landscape reconstructions, but the importance of knowing the pollen rain released from orchards remains underexplored. In particular, the role of cultivated trees is in past and current agrarian landscapes has not been fully investigated. Here, we present a pollen analysis of 70 surface soil samples taken from 12 olive groves in Basilicata and Tuscany, two regions of Italy that exemplify this cultivation in the Mediterranean basin. This study was carried out to assess the representativeness of Olea pollen in modern cultivations. Although many variables can influence the amount of pollen observed in soils, it was clear that most of the pollen was deposited below the trees in the olive groves. A rapid decline in the olive pollen percentages (c. 85% on average was found when comparing samples taken from IN vs. OUT of each grove. The mean percentages of Olea pollen obtained from the archeological sites close to the studied orchards suggest that olive groves were established far from the Roman farmhouses of Tuscany. Further south, in the core of the Mediterranean basin, the cultivation of Olea trees was likely situated ~500–1,000 m from the rural sites in Basilicata, and dated from the Hellenistic to the Medieval period.

  13. The representativeness of Olea pollen from olive groves and the late Holocene landscape reconstruction in central Mediterranean

    Science.gov (United States)

    Florenzano, Assunta; Mercuri, Anna Maria; Rinaldi, Rossella; Rattighieri, Eleonora; Fornaciari, Rita; Messora, Rita; Arru, Laura

    2017-10-01

    Modern pollen spectra are an invaluable reference tool for paleoenvironmental and cultural landscape reconstructions, but the importance of knowing the pollen rain released from orchards remains underexplored. In particular, the role of cultivated trees is in past and current agrarian landscapes has not been fully investigated. Here, we present a pollen analysis of 70 surface soil samples taken from 12 olive groves in Basilicata and Tuscany, two regions of Italy that exemplify this cultivation in the Mediterranean basin. This study was carried out to assess the representativeness of Olea pollen in modern cultivations. Although many variables can influence the amount of pollen observed in soils, it was clear that most of the pollen was deposited below the trees in the olive groves. A rapid decline in the olive pollen percentages (c. 85% on average) was found when comparing samples taken from IN vs. OUT of each grove. The mean percentages of Olea pollen obtained from the archaeological sites close to the studied orchards suggest that olive groves were established far from the Roman farmhouses of Tuscany. Further south, in the core of the Mediterranean basin, the cultivation of Olea trees was likely situated approximately 500–1000 m from the rural sites in Basilicata, and dated from the Hellenistic to the Medieval period.

  14. Stress field reconstruction in an active mudslide

    Science.gov (United States)

    Baroň, Ivo; Kernstocková, Markéta; Melichar, Rostislav

    2017-07-01

    Meso-scale structures from gravitational slope deformation observed in landslides and deep-seated gravitational slope failures are very similar to those of endogenous ones. Therefore we applied palaeostress analysis of fault-slip data for reconstructing the stress field of an active mudslide in Pechgraben, Austria. This complex compound landslide has developed in clayey colluvium and shale and was activated after a certain period of dormancy in June 2013. During the active motion on June 12, 2013, 73 fault-slip traces at 9 locations were measured within the landslide body. The heterogeneous fault-slip data were processed in term of palaeostresses, the reconstructed palaeostress tensor being characterized by the orientations of the three principal stress axes and the stress ratio (which provides the shape of the stress ellipsoid). The results of the palaeostress analysis were compared to airborne laser scan digital terrain models that revealed dynamics and superficial displacements of the moving mass prior and after our survey. The results were generally in good agreement with the observed landslide displacement pattern and with the anticipated stress regime according to Mohr-Coulomb failure criteria and Anderson's theory. The compressional regime was mostly registered at the toe in areas, where a compressional stress field is expected during previous mass-movement stages, or at margins loaded by subsequent landslide bodies from above. On the other hand, extension regimes were identified at the head scarps of secondary slides, subsequently on bulged ridges at the toe and in the zone of horst-and-graben structures in the lower central part of the main landslide body, where the basal slip surface probably had locally convex character. Strike-slip regimes, as well as oblique normal or oblique reverse regimes were observed at the lateral margins of the landslide bodies. The directions of principal stresses could be used as markers of landslide movement directions

  15. Reconstruction of paleoenvironments by analyzing spatial shell orientation

    Science.gov (United States)

    Lukeneder, Susanne; Lukeneder, Alexander; Weber, Gerhard W.; Exner, Ulrike

    2013-04-01

    Fossils, especially their mass-occurrences, can be exploited as useful source of information about the depositional conditions. Particularly abundant fossils with elongated shape such as belemnites are useful indicators to draw conclusions about influencing factors (e.g. paleocurrents) of paleoenvironments. Orthocone cephalopods, gastropods, bivalves, foraminifers, vertebrate bones and others have been used so far in field-based spatial orientation studies (Flügel 2004). Normal coiled (planispiral) cephalopods can also provide such depositional information. A new method for reconstructing spatial shell orientation in 3D is presented here. A roughly 225 million-year-old (Carnian, Triassic) monospecific mass-occurrence of the ammonoid Kasimlarceltites krystyni from the Taurus Mountains in Turkey (project FWF P22109-B17; Lukeneder et al. 2012), embedded in limestone, is used for this pilot study. The most obvious method for digitization of the ammonoids, μ-computed tomography (CT), was not successful in this case due to the lack of density differences between the ammonoids (i.e. secondary calcite shells) and the embedding source rock (carbonate). Therefore we had to come back to the classic method of grinding, which, despite its invasive character, cannot always be disregarded, particularly if digital recording methods are not applicable and samples are large enough to sacrifice parts. A 150x170x140 mm block of the ammonoid bearing limestone bed has been grinded to 70 slices, with a distance of 2mm between each slice. By using a semi-automatic region growing algorithm of the 3D visualization software Amira, the ammonoids were segmented, and a 3D model of this mass-occurrence reconstructed. We used landmarks as well as trigonometric and vector-based calculations to compute the diameters and the spatial orientation of each ammonoid. For the diameters, the longest distance (longitudinal axis) of each shell (landmark a & b) and the orthogonal distance from this cord to

  16. Reconstruction of Late Pleistocene Paleoenvironments using bulk geochemistry of paleosols from the Lake Victoria Region

    Science.gov (United States)

    Beverly, Emily J.; Peppe, Daniel J.; Driese, Steven G.; Blegen, Nick; Faith, J. Tyler; Tryon, Christian A.; Stinchcomb, Gary E.

    2017-11-01

    The impact of changing environments on the evolution and dispersal of Homo sapiens is highly debated, but few data are available from equatorial Africa. Lake Victoria is the largest freshwater lake in the tropics and is currently a biogeographic barrier between the eastern and western branches of the East African Rift. The lake has previously desiccated at 17 ka and again at 15 ka, but little is known from this region prior to the Last Glacial Maximum. The Pleistocene terrestrial deposits on the northeast coast of Lake Victoria (94 to 36 ka) are ideal for paleoenvironmental reconstructions where volcaniclastic deposits (tuffs), fluvial deposits, tufa, and paleosols are exposed, which can be used to reconstruct Critical Zones (CZ) of the past (paleo-CZs). The paleo-CZ is a holistic concept that reconstructs the entire landscape using geologic records of the atmosphere, hydrosphere, lithosphere, biosphere, and pedosphere (the focus of this study). New paleosol-based mean annual precipitation (MAP) proxies from Karungu, Rusinga Island, and Mfangano Island indicate an average MAP of 750108 mm yr-1 (CALMAG), 800182 mm yr-1 (CIA-K), and 1010228 mm yr-1 (PPM1.0) with no statistical difference throughout the 11 m thick sequence. This corresponds to between 54 and 72% of modern precipitation. Tephras bracketing these paleosols have been correlated across seven sites, and sample a regional paleo-CZ across a 55 km transect along the eastern shoreline of the modern lake. Given the sensitivity of Lake Victoria to precipitation, it is likely that the lake was significantly smaller than modern between 94 ka and 36 ka. This would have removed a major barrier for the movement of fauna (including early modern humans) and provided a dispersal corridor across the equator and between the rifts. It is also consistent with the associated fossil faunal assemblage indicative of semi-arid grasslands. During the Late Pleistocene, the combined geologic and paleontological evidence suggests a

  17. Reconstruction of Late Pleistocene Paleoenvironments Using Bulk Geochemistry of Paleosols from the Lake Victoria Region

    Directory of Open Access Journals (Sweden)

    Emily J. Beverly

    2017-11-01

    Full Text Available The impact of changing environments on the evolution and dispersal of Homo sapiens is highly debated, but few data are available from equatorial Africa. Lake Victoria is the largest freshwater lake in the tropics and is currently a biogeographic barrier between the eastern and western branches of the East African Rift. The lake has previously desiccated at ~17 ka and again at ~15 ka, but little is known from this region prior to the Last Glacial Maximum. The Pleistocene terrestrial deposits on the northeast coast of Lake Victoria (94–36 ka are ideal for paleoenvironmental reconstructions where volcaniclastic deposits (tuffs, fluvial deposits, tufa, and paleosols are exposed, which can be used to reconstruct Critical Zones (CZ of the past (paleo-CZs. The paleo-CZ is a holistic concept that reconstructs the entire landscape using geologic records of the atmosphere, hydrosphere, lithosphere, biosphere, and pedosphere (the focus of this study. New paleosol-based mean annual precipitation (MAP proxies from Karungu, Rusinga Island, and Mfangano Island indicate an average MAP of 750 ± 108 mm year−1 (CALMAG, 800 ± 182 mm year−1 (CIA-K, and 1,010 ± 228 mm year−1 (PPM1.0 with no statistical difference throughout the 11 m thick sequence. This corresponds to between 54 and 72% of modern precipitation. Tephras bracketing these paleosols have been correlated across seven sites, and sample a regional paleo-CZ across a ~55 km transect along the eastern shoreline of the modern lake. Given the sensitivity of Lake Victoria to precipitation, it is likely that the lake was significantly smaller than modern between 94 and 36 ka. This would have removed a major barrier for the movement of fauna (including early modern humans and provided a dispersal corridor across the equator and between the rifts. It is also consistent with the associated fossil faunal assemblage indicative of semi-arid grasslands. During the Late Pleistocene, the combined geologic and

  18. Beard reconstruction: A surgical algorithm.

    Science.gov (United States)

    Ninkovic, M; Heidekrueger, P I; Ehrl, D; von Spiegel, F; Broer, P N

    2016-06-01

    Facial defects with loss of hair-bearing regions can be caused by trauma, infection, tumor excision, or burn injury. The presented analysis evaluates a series of different surgical approaches with a focus on male beard reconstruction, emphasizing the role of tissue expansion of regional and free flaps. Locoregional and free flap reconstructions were performed in 11 male patients with 14 facial defects affecting the hair-bearing bucco-mandibular or perioral region. In order to minimize donor-site morbidity and obtain large amounts of thin, pliable, hair-bearing tissue, pre-expansion was performed in five of 14 patients. Eight of 14 patients were treated with locoregional flap reconstructions and six with free flap reconstructions. Algorithms regarding pre- and intraoperative decision making are discussed and long-term (mean follow-up 1.5 years) results analyzed. Major complications, including tissue expander infection with the need for removal or exchange, partial or full flap loss, occurred in 0% (0/8) of patients with locoregional flaps and in 17% (1/6) of patients undergoing free flap reconstructions. Secondary refinement surgery was performed in 25% (2/8) of locoregional flaps and in 67% (4/6) of free flaps. Both locoregional and distant tissue transfers play a role in beard reconstruction, while pre-expansion remains an invaluable tool. Paying attention to the presented principles and considering the significance of aesthetic facial subunits, range of motion, aesthetics, and patient satisfaction were improved long term in all our patients while minimizing donor-site morbidity. Copyright © 2016 British Association of Plastic, Reconstructive and Aesthetic Surgeons. Published by Elsevier Ltd. All rights reserved.

  19. Fingerprint image reconstruction for swipe sensor using Predictive Overlap Method

    Directory of Open Access Journals (Sweden)

    Mardiansyah Ahmad Zafrullah

    2018-01-01

    Full Text Available Swipe sensor is one of many biometric authentication sensor types that widely applied to embedded devices. The sensor produces an overlap on every pixel block of the image, so the picture requires a reconstruction process before heading to the feature extraction process. Conventional reconstruction methods require extensive computation, causing difficult to apply to embedded devices that have limited computing process. In this paper, image reconstruction is proposed using predictive overlap method, which determines the image block shift from the previous set of change data. The experiments were performed using 36 images generated by a swipe sensor with 128 x 8 pixels size of the area, where each image has an overlap in each block. The results reveal computation can increase up to 86.44% compared with conventional methods, with accuracy decreasing to 0.008% in average.

  20. [Trachea repair and reconstruction with new composite artificial trachea transplantation].

    Science.gov (United States)

    Liu, Wenliang; Xiao, Peng; Liang, Hengxing; An, Ran; Cheng, Gang; Yu, Fenglei

    2013-03-01

    To construct a new composite artificial trachea and to investigate the feasibility of trachea repair and reconstruction with the new composite artificial trachea transplantation in dogs. The basic skeleton of the new composite artificial trachea was polytetrafluoroethylene vascular prosthesis linked with titanium rings at both ends. Dualmesh was sutured on titanium rings. Sixteen dogs, weighing (14.9 +/- 2.0) kg, female or male, were selected. The 5 cm cervical trachea was resected to prepare the cervical trachea defect model. The trachea repair and reconstruction was performed with the new composite artificial trachea. Then fiberoptic bronchoscope examination, CT scan and three-dimensinal reconstruction were conducted at immediate, 1 month, and 6 months after operation. Gross observation and histological examination were conducted at 14 months to evaluate the repair and reconstruction efficacy. No dog died during operation of trachea reconstruction. One dog died of dyspnea at 37, 41, 55, 66, 140, and 274 days respectively because of anastomotic dehiscence and artificial trachea displacement; the other 10 dogs survived until 14 months. The fiberoptic bronchoscope examination, CT scan and three-dimensinal reconstruction showed that artificial tracheas were all in good location without twisting at immediate after operation; mild stenosis occurred and anastomoses had slight granulation in 6 dogs at 1 month; severe stenosis developed and anastomosis had more granulation in 1 dog and the other dogs were well alive without anastomotic stenosis at 6 months. At 14 months, gross observation revealed that outer surface of the artificial trachea were encapsulated by fibrous connective tissue in all of 10 dogs. Histological examination showed inflammatory infiltration and hyperplasia of fibrous tissue and no epithelium growth on the inner wall of the artificial trachea. The new composite artificial trachea can be used to repair and reconstruct defect of the trachea for a short

  1. Salinity proxy comparison in four tropical biogenic carbonates for suitability in paleohydrologic reconstruction

    Science.gov (United States)

    Broach, K.; Paytan, A.; Street, J. H.

    2014-12-01

    Climate change is expected to increasingly stress water resources in drought-prone areas such as the American Southwest or Central America. Understanding patterns in precipitation frequency and intensity in the recent past are critical to accurately modeling groundwater recharge potential and managing diminishing resources in conjunction with rapid urbanization (e.g. Yucatan, Mexico). Wet and dry seasons on the Yucatan Peninsula are affected by the Intertropical Convergence Zone (ITCZ) which can exacerbate drought as the climate warms. This study focuses on precipitation patterns during the late Holocene recorded in foraminifera (Ammonia beccarii, Elphidium sp., Quinqueloculina sp.) and ostracods (suspected Hemicyprideis nichuptensis) along a transect in Celestun Lagoon near Merida, Yucatan, Mexico. Submarine groundwater springs feed the north terminus of the lagoon resulting in δ18O and Mg gradients toward the ocean which oscillate in response to increased or decreased precipitation. Mg/Ca ratios from the north (4.59) and south (3.08) lagoon suggest warmer waters in the shallow northern end, resulting in evaporation and confounding the δ18O values there (upper lagoon = 2.1‰, middle lagoon = 0.3‰, lower lagoon = 1.5‰). B/Ca ratios remain fairly constant (average range 27.3-33.2) despite increasing B concentrations toward the southern mouth, suggesting a concurrent increase in dissolved calcium down the lagoon and thus a lower Ca signal in spite of the karst source of springs. Of the four species tested, A. beccarii and H. nichuptensis yielded the most similar results ([Ca] ~ 150 ppm). Replicate analyses are needed for Elphidium sp. and Quinqueloculina sp. due to their low sample size and signal variability which suggests they may not be ideal candidates for paleoenvironmental reconstruction in Celestun Lagoon and possible other marginal environments around the Yucatan Peninsula.

  2. Titanium template for scaphoid reconstruction.

    Science.gov (United States)

    Haefeli, M; Schaefer, D J; Schumacher, R; Müller-Gerbl, M; Honigmann, P

    2015-06-01

    Reconstruction of a non-united scaphoid with a humpback deformity involves resection of the non-union followed by bone grafting and fixation of the fragments. Intraoperative control of the reconstruction is difficult owing to the complex three-dimensional shape of the scaphoid and the other carpal bones overlying the scaphoid on lateral radiographs. We developed a titanium template that fits exactly to the surfaces of the proximal and distal scaphoid poles to define their position relative to each other after resection of the non-union. The templates were designed on three-dimensional computed tomography reconstructions and manufactured using selective laser melting technology. Ten conserved human wrists were used to simulate the reconstruction. The achieved precision measured as the deviation of the surface of the reconstructed scaphoid from its virtual counterpart was good in five cases (maximal difference 1.5 mm), moderate in one case (maximal difference 3 mm) and inadequate in four cases (difference more than 3 mm). The main problems were attributed to the template design and can be avoided by improved pre-operative planning, as shown in a clinical case. © The Author(s) 2014.

  3. Complex Empiricism and the Quantification of Uncertainty in Paleoclimate Reconstructions

    Science.gov (United States)

    Brumble, K. C.

    2014-12-01

    Because the global climate cannot be observed directly, and because of vast and noisy data sets, climate science is a rich field to study how computational statistics informs what it means to do empirical science. Traditionally held virtues of empirical science and empirical methods like reproducibility, independence, and straightforward observation are complicated by representational choices involved in statistical modeling and data handling. Examining how climate reconstructions instantiate complicated empirical relationships between model, data, and predictions reveals that the path from data to prediction does not match traditional conceptions of empirical inference either. Rather, the empirical inferences involved are "complex" in that they require articulation of a good deal of statistical processing wherein assumptions are adopted and representational decisions made, often in the face of substantial uncertainties. Proxy reconstructions are both statistical and paleoclimate science activities aimed at using a variety of proxies to reconstruct past climate behavior. Paleoclimate proxy reconstructions also involve complex data handling and statistical refinement, leading to the current emphasis in the field on the quantification of uncertainty in reconstructions. In this presentation I explore how the processing needed for the correlation of diverse, large, and messy data sets necessitate the explicit quantification of the uncertainties stemming from wrangling proxies into manageable suites. I also address how semi-empirical pseudo-proxy methods allow for the exploration of signal detection in data sets, and as intermediary steps for statistical experimentation.

  4. Reconstructing a general inflationary action

    International Nuclear Information System (INIS)

    Bean, Rachel; Chung, Daniel J. H.; Geshnizjani, Ghazal

    2008-01-01

    If inflation is to be considered in an unbiased way, as possibly originating from one of a wide range of underlying theories, then observations need not be simply applied to reconstructing the inflaton potential V(φ) or a specific kinetic term, as in Dirac-Born-Infeld inflation, but rather to reconstruct the inflationary action in its entirety. We discuss the constraints that can be placed on a general single field action from measurements of the primordial scalar and tensor fluctuation power spectra and non-Gaussianities. The analytic form of the action that is consistent with data turns out to be surprisingly simple and easy to categorize. We also present the flow equation formalism for reconstructing a general inflationary Lagrangian L(X,φ), with X=(1/2)∂ μ φ∂ μ φ, in a general gauge, that reduces to canonical and DBI inflation in the specific gauge L X =c s -1 .

  5. Avoiding Complications with MPFL Reconstruction.

    Science.gov (United States)

    Smith, Marvin K; Werner, Brian C; Diduch, David R

    2018-05-12

    To discuss the potentially significant complications associated with medial patellofemoral ligament (MPFL) reconstruction. Additionally, to review the most current and relevant literature with an emphasis on avoiding these potential complications. Multiple cadaveric studies have characterized the anatomy of the MPFL and the related morphologic abnormalities that contribute to recurrent lateral patellar instability. Such abnormalities include patella alta, excessive tibial tubercle to trochlear grove (TT-TG) distance, trochlear dysplasia, and malalignment. Recent studies have evaluated the clinical outcomes associated with the treatment of concomitant pathology in combination with MPFL reconstruction, which is critical in avoiding recurrent instability and complications. Although there remains a lack of consensus regarding various critical aspects of MPFL reconstruction, certain concepts remain imperative. Our preferred methods and rationales for surgical techniques are described. These include appropriate work up, a combination of procedures to address abnormal morphology, anatomical femoral insertion, safe and secure patellar fixation, appropriate graft length fixation, and thoughtful knee flexion during fixation.

  6. Polaron-Driven Surface Reconstructions

    Directory of Open Access Journals (Sweden)

    Michele Reticcioli

    2017-09-01

    Full Text Available Geometric and electronic surface reconstructions determine the physical and chemical properties of surfaces and, consequently, their functionality in applications. The reconstruction of a surface minimizes its surface free energy in otherwise thermodynamically unstable situations, typically caused by dangling bonds, lattice stress, or a divergent surface potential, and it is achieved by a cooperative modification of the atomic and electronic structure. Here, we combined first-principles calculations and surface techniques (scanning tunneling microscopy, non-contact atomic force microscopy, scanning tunneling spectroscopy to report that the repulsion between negatively charged polaronic quasiparticles, formed by the interaction between excess electrons and the lattice phonon field, plays a key role in surface reconstructions. As a paradigmatic example, we explain the (1×1 to (1×2 transition in rutile TiO_{2}(110.

  7. CURRENT CONCEPTS IN ACL RECONSTRUCTION

    Directory of Open Access Journals (Sweden)

    Freddie H. Fu

    2008-09-01

    Full Text Available Current Concepts in ACL Reconstruction is a complete reference text composed of the most thorough collection of topics on the ACL and its surgical reconstruction compiled, with contributions from some of the world's experts and most experienced ACL surgeons. Various procedures mentioned throughout the text are also demonstrated in an accompanying video CD-ROM. PURPOSE Composing a single, comprehensive and complete information source on ACL including basic sciences, clinical issues, latest concepts and surgical techniques, from evaluation to outcome, from history to future, editors and contributors have targeted to keep the audience pace with the latest concepts and techniques for the evaluation and the treatment of ACL injuries. FEATURES The text is composed of 27 chapters in 6 sections. The first section is mostly about basic sciences, also history of the ACL, imaging, clinical approach to adolescent and pediatric patients are subjected. In the second section, Graft Choices and Arthroscopy Portals for ACL Reconstruction are mentioned. The third section is about the technique and the outcome of the single-bundle ACL reconstruction. The fourth chapter includes the techniques and outcome of the double-bundle ACL reconstruction. In the fifth chapter revision, navigation technology, rehabilitation and the evaluation of the outcome of ACL reconstruction is subjected. The sixth/the last chapter is about the future advances to reach: What We Have Learned and the Future of ACL Reconstruction. AUDIENCE Orthopedic residents, sports traumatology and knee surgery fellows, orthopedic surgeons, also scientists in basic sciences or clinicians who are studying or planning a research on ACL forms the audience group of this book. ASSESSMENT This is the latest, the most complete and comprehensive textbook of ACL reconstruction produced by the editorial work up of two pioneer and masters "Freddie H. Fu MD and Steven B. Cohen MD" with the contribution of world

  8. Recovery after abdominal wall reconstruction

    DEFF Research Database (Denmark)

    Jensen, Kristian Kiim

    2017-01-01

    Incisional hernia is a common long-term complication to abdominal surgery, occurring in more than 20% of all patients. Some of these hernias become giant and affect patients in several ways. This patient group often experiences pain, decreased perceived body image, and loss of physical function......, which results in a need for surgical repair of the giant hernia, known as abdominal wall reconstruction. In the current thesis, patients with a giant hernia were examined to achieve a better understanding of their physical and psychological function before and after abdominal wall reconstruction. Study...... was lacking. Study II was a case-control study of the effects of an enhanced recovery after surgery pathway for patients undergoing abdominal wall reconstruction for a giant hernia. Sixteen consecutive patients were included prospectively after the implementation of a new enhanced recovery after surgery...

  9. Late Holocene environmental reconstructions and the implications on flood events, typhoon patterns, and agriculture activities in NE Taiwan

    Science.gov (United States)

    Wang, L.-C.; Behling, H.; Lee, T.-Q.; Li, H.-C.; Huh, C.-A.; Shiau, L.-J.; Chang, Y.-P.

    2014-05-01

    In this study, we reconstructed the paleoenvironmental changes from a sediment archive of the floodplain lake in Ilan Plain of NE Taiwan on multi-decadal resolution for the last ca. 1900 years. On the basis of pollen and diatom records, we evaluated the record of past vegetation, floods, typhoons and agriculture activities of this area, which is sensitive to the hydrological conditions of the West Pacific. High sedimentation rates with low microfossil preservations reflected multiple flood events and humid climatic conditions during 100-1400 AD. A shortly interrupted dry phase can be found during 940-1010 AD. The driest phase corresponds to the Little Ice Age phase 1 (LIA1, 1400-1620 AD) with less disturbance by flood events, which enhanced the occurrence of wetlands (Cyperaceae) and diatom depositions. Humid phases with frequent typhoons are inferred by high percentages of Lagerstroemia and high ratios of planktonic/benthic diatoms, respectively, during 500-700 AD and Little Ice Age phase 2 (LIA2, 1630-1850 AD). The occurrences of cultivated Poaceae (Oryza) during 1250-1300 AD and the last ~400 years, reflect agriculture activities, which seems to implicate strongly with the environmental stability. Finally, we found flood events which dominated during the El Niño-like stage, but dry events as well as frequent typhoon events happened during the La Niña-like stage. After comparing our results with the reconstructed proxy for tropical hydrological conditions, we suggested that the local hydrology in coastal East Asia were strongly affected by the typhoon-triggered heavy rainfalls which were influenced by the variation of global temperature, expansion of the Pacific warm pool and intensification of ENSO events.

  10. Clinical applications of iterative reconstruction

    International Nuclear Information System (INIS)

    Eberl, S.

    1998-01-01

    Expectation maximisation (EM) reconstruction largely eliminates the hot and cold streaking artifacts characteristic of filtered-back projection (FBP) reconstruction around localised hot areas, such as the bladder. It also substantially reduces the problem of decreased inferior wall counts in MIBI myocardial perfusion studies due to ''streaking'' from high liver uptake. Non-uniform attenuation and scatter correction, resolution recovery, anatomical information, e.g. from MRI or CT tracer kinetic modelling, can all be built into the EM reconstruction imaging model. The properties of ordered subset EM (OSEM) have also been used to correct for known patient motion as part of the reconstruction process. These uses of EM are elaborated more fully in some of the other abstracts of this meeting. Currently we use OSEM routinely for: (i) studies where streaking is a problem, including all MIBI myocardial perfusion studies, to avoid hot liver inferior wall artifact, (ii) all whole body FDG PET, all lung V/Q SPECT (which have a short acquisition time) and all gated 201 TI myocardial perfusion studies due to improved noise characteristics of OSEM in these studies; (iii) studies with measured, non-uniform attenuation correction. With the accelerated OSEM algorithm, iterative reconstruction is practical for routine clinical applications and we have found OSEM to provide clearly superior reconstructions for the areas listed above and are investigating its application to other studies. In clinical use, we have not found OSEM to introduce artifacts which would not also occur with FBP, e.g. uncorrected patient motion will cause artifacts with both OSEM and FBP

  11. Reconstruction of March-June precipitation from tree rings in central Liaoning, China

    Science.gov (United States)

    Wang, Yanchao; Liu, Yu

    2017-11-01

    A dendrochronological profile was generated from Chinese pines ( Pinus tabulaeformis Carr.) in the Qianshan Mountains in northeastern China. Based on correlation analyses, the pattern of precipitation from March to June ( P 36 ) was reconstructed using a simple linear model, which explained 42.7% of the total variance in observed precipitation from 1951 to 2012. The reconstructed P 36 series revealed a consistently increasing trend in precipitation during the twentieth century in the Qianshan Mountains. The reconstructed data showed trends that were similar to those in the variation in trends for March-June precipitation observed at the Shenyang station, the reconstructed January-May precipitation trends in Shenyang City, and the reconstructed average June-September relative humidity for Yiwulü Mountain. The reconstructed data also showed good agreement with the droughts reported in historical documents and recorded by meteorological stations in Liaoning. Spatial correlation analyses show that the reconstructed data reflect the variability in precipitation that occurs over much of northeastern China. In addition, our reconstruction showed a significant periodicity. The significant correlations between the reconstructed P 36 and the El Niño-Southern Oscillation (ENSO), Pacific Decadal Oscillation (PDO) and sunspot numbers indicate that precipitation variability in the Qianshan Mountain region is probably driven by extensive atmosphere-sea interactions and solar activities.

  12. Ranking of tree-ring based temperature reconstructions of the past millennium

    Science.gov (United States)

    Esper, Jan; Krusic, Paul J.; Ljungqvist, Fredrik C.; Luterbacher, Jürg; Carrer, Marco; Cook, Ed; Davi, Nicole K.; Hartl-Meier, Claudia; Kirdyanov, Alexander; Konter, Oliver; Myglan, Vladimir; Timonen, Mauri; Treydte, Kerstin; Trouet, Valerie; Villalba, Ricardo; Yang, Bao; Büntgen, Ulf

    2016-08-01

    Tree-ring chronologies are widely used to reconstruct high-to low-frequency variations in growing season temperatures over centuries to millennia. The relevance of these timeseries in large-scale climate reconstructions is often determined by the strength of their correlation against instrumental temperature data. However, this single criterion ignores several important quantitative and qualitative characteristics of tree-ring chronologies. Those characteristics are (i) data homogeneity, (ii) sample replication, (iii) growth coherence, (iv) chronology development, and (v) climate signal including the correlation with instrumental data. Based on these 5 characteristics, a reconstruction-scoring scheme is proposed and applied to 39 published, millennial-length temperature reconstructions from Asia, Europe, North America, and the Southern Hemisphere. Results reveal no reconstruction scores highest in every category and each has their own strengths and weaknesses. Reconstructions that perform better overall include N-Scan and Finland from Europe, E-Canada from North America, Yamal and Dzhelo from Asia. Reconstructions performing less well include W-Himalaya and Karakorum from Asia, Tatra and S-Finland from Europe, and Great Basin from North America. By providing a comprehensive set of criteria to evaluate tree-ring chronologies we hope to improve the development of large-scale temperature reconstructions spanning the past millennium. All reconstructions and their corresponding scores are provided at http://www.blogs.uni-mainz.de/fb09climatology.

  13. Magnetic resonance imaging of cyclops lesion as a cause of persistent morbidity after anterior cruciate ligament reconstruction

    OpenAIRE

    Amit Kharat; Sahil Garg; Amarjit Singh; Vilas Kulkarni

    2015-01-01

    Localized anterior arthrofibrosis (cyclops lesion) is having around 1-9.8% frequency rate after anterior cruciate ligament (ACL) reconstruction. It has been reported to be a significant cause of loss of knee extension after reconstruction of the ACL of the knee. We present a case report of a patient with prior ACL reconstruction who presented with pain and loss of extension following surgery. MR imaging revealed the typical features of cyclops lesion. Repeat arthroscopy excision of the lesion...

  14. Reconstructing biochemical pathways from time course data.

    Science.gov (United States)

    Srividhya, Jeyaraman; Crampin, Edmund J; McSharry, Patrick E; Schnell, Santiago

    2007-03-01

    Time series data on biochemical reactions reveal transient behavior, away from chemical equilibrium, and contain information on the dynamic interactions among reacting components. However, this information can be difficult to extract using conventional analysis techniques. We present a new method to infer biochemical pathway mechanisms from time course data using a global nonlinear modeling technique to identify the elementary reaction steps which constitute the pathway. The method involves the generation of a complete dictionary of polynomial basis functions based on the law of mass action. Using these basis functions, there are two approaches to model construction, namely the general to specific and the specific to general approach. We demonstrate that our new methodology reconstructs the chemical reaction steps and connectivity of the glycolytic pathway of Lactococcus lactis from time course experimental data.

  15. Ulysses S. Grant and Reconstruction.

    Science.gov (United States)

    Wilson, David L.

    1989-01-01

    Discusses the role played by Ulysses S. Grant during the four years of Reconstruction before he became President of the United States. Describes the dynamics of the relationship between Grant and Andrew Johnson. Points out that Grant's attitude of service to the laws created by Congress submerged his desire to create a new South. (KO)

  16. ASME method for particle reconstruction

    International Nuclear Information System (INIS)

    Ierusalimov, A.P.

    2009-01-01

    The method of approximate solution of motion equation (ASME) was used to reconstruct the parameters for charged particles. It provides a good precision for momentum, angular and space parameters of particles in coordinate detectors. The application of the method for CBM, HADES and MPD/NICA setups is discussed

  17. A Survey of Urban Reconstruction

    KAUST Repository

    Musialski, P.

    2013-05-10

    This paper provides a comprehensive overview of urban reconstruction. While there exists a considerable body of literature, this topic is still under active research. The work reviewed in this survey stems from the following three research communities: computer graphics, computer vision and photogrammetry and remote sensing. Our goal is to provide a survey that will help researchers to better position their own work in the context of existing solutions, and to help newcomers and practitioners in computer graphics to quickly gain an overview of this vast field. Further, we would like to bring the mentioned research communities to even more interdisciplinary work, since the reconstruction problem itself is by far not solved. This paper provides a comprehensive overview of urban reconstruction. While there exists a considerable body of literature, this topic is still under active research. The work reviewed in this survey stems from the following three research communities: computer graphics, computer vision and photogrammetry and remote sensing. Our goal is to provide a survey that will help researchers to better position their own work in the context of existing solutions, and to help newcomers and practitioners in computer graphics to quickly gain an overview of this vast field. Further, we would like to bring the mentioned research communities to even more interdisciplinary work, since the reconstruction problem itself is by far not solved. © 2013 The Eurographics Association and John Wiley & Sons Ltd.

  18. A Survey of Urban Reconstruction

    KAUST Repository

    Musialski, P.; Wonka, Peter; Aliaga, D. G.; Wimmer, M.; van Gool, L.; Purgathofer, W.

    2013-01-01

    This paper provides a comprehensive overview of urban reconstruction. While there exists a considerable body of literature, this topic is still under active research. The work reviewed in this survey stems from the following three research communities: computer graphics, computer vision and photogrammetry and remote sensing. Our goal is to provide a survey that will help researchers to better position their own work in the context of existing solutions, and to help newcomers and practitioners in computer graphics to quickly gain an overview of this vast field. Further, we would like to bring the mentioned research communities to even more interdisciplinary work, since the reconstruction problem itself is by far not solved. This paper provides a comprehensive overview of urban reconstruction. While there exists a considerable body of literature, this topic is still under active research. The work reviewed in this survey stems from the following three research communities: computer graphics, computer vision and photogrammetry and remote sensing. Our goal is to provide a survey that will help researchers to better position their own work in the context of existing solutions, and to help newcomers and practitioners in computer graphics to quickly gain an overview of this vast field. Further, we would like to bring the mentioned research communities to even more interdisciplinary work, since the reconstruction problem itself is by far not solved. © 2013 The Eurographics Association and John Wiley & Sons Ltd.

  19. Solutions for autonomy and reconstruction

    Energy Technology Data Exchange (ETDEWEB)

    Wilming, Wilhelm

    2011-07-01

    Stand-alone systems, whether solar home or pico solar systems, have reached a cost level at which they are an increasingly interesting option for wide-area development in grid-remote regions or for reconstruction where the previous grid infrastructure has been destroyed. (orig.)

  20. Poethical: Breaking Ground for Reconstruction

    Science.gov (United States)

    Krojer, Jo; Holge-Hazelton, Bibi

    2008-01-01

    Departing from a methodological experiment performed by the authors, this article reflects on and discusses issues of ethics and politics in poetic strategies of "representation". In relation to the experiment the article questions how to conceive the notion of connectedness between empirical time and the reconstruction of it in poststructuralist…

  1. Stability indicators in network reconstruction.

    Directory of Open Access Journals (Sweden)

    Michele Filosi

    Full Text Available The number of available algorithms to infer a biological network from a dataset of high-throughput measurements is overwhelming and keeps growing. However, evaluating their performance is unfeasible unless a 'gold standard' is available to measure how close the reconstructed network is to the ground truth. One measure of this is the stability of these predictions to data resampling approaches. We introduce NetSI, a family of Network Stability Indicators, to assess quantitatively the stability of a reconstructed network in terms of inference variability due to data subsampling. In order to evaluate network stability, the main NetSI methods use a global/local network metric in combination with a resampling (bootstrap or cross-validation procedure. In addition, we provide two normalized variability scores over data resampling to measure edge weight stability and node degree stability, and then introduce a stability ranking for edges and nodes. A complete implementation of the NetSI indicators, including the Hamming-Ipsen-Mikhailov (HIM network distance adopted in this paper is available with the R package nettools. We demonstrate the use of the NetSI family by measuring network stability on four datasets against alternative network reconstruction methods. First, the effect of sample size on stability of inferred networks is studied in a gold standard framework on yeast-like data from the Gene Net Weaver simulator. We also consider the impact of varying modularity on a set of structurally different networks (50 nodes, from 2 to 10 modules, and then of complex feature covariance structure, showing the different behaviours of standard reconstruction methods based on Pearson correlation, Maximum Information Coefficient (MIC and False Discovery Rate (FDR strategy. Finally, we demonstrate a strong combined effect of different reconstruction methods and phenotype subgroups on a hepatocellular carcinoma miRNA microarray dataset (240 subjects, and we

  2. Genital reconstruction in exstrophy patients

    Directory of Open Access Journals (Sweden)

    R B Nerli

    2012-01-01

    Full Text Available Introduction: Surgery for bladder exstrophy has been evolving over the last four to five decades. Because survival has become almost universal, the focus has changed in the exstrophy-epispadias complex to improving quality of life. The most prevalent problem in the long-term function of exstrophy patients is the sexual activity of the adolescent and adult males. The penis in exstrophy patients appears short because of marked congenital deficiency of anterior corporal tissue. Many patients approach for genital reconstruction to improve cosmesis as well as to correct chordee. We report our series of male patients seeking genital reconstruction following exstrophy repair in the past. Materials and Methods: Fourteen adolescent/adult male patients attended urology services during the period January 2000-December 2009 seeking genital reconstruction following exstrophy repair in the past. Results: Three patients underwent epispadias repair, four patients had chordee correction with cosmetic excision of skin tags and seven patients underwent chordee correction with penile lengthening. All patients reported satisfaction in the answered questionnaire. Patients undergoing penile lengthening by partial corporal dissection achieved a mean increase in length of 1.614 ± 0.279 cm dorsally and 1.543 ± 0.230 cm ventrally. The satisfactory rate assessed by the Short Form-36 (SF-36 showed that irrespective of the different genital reconstructive procedures done, the patients were satisfied with cosmetic and functional outcome. Conclusions: Surgical procedures have transformed the management in these patients with bladder exstrophy. Bladders can be safely placed within the pelvis, with most patients achieving urinary continence and cosmetically acceptable external genitalia. Genital reconstruction in the form of correction of chordee, excision of ugly skin tags and lengthening of penis can be performed to give the patients a satisfactory cosmetic and functional

  3. Mandibular reconstruction in adults: a review.

    NARCIS (Netherlands)

    Goh, B.T.; Lee, S.; Tideman, H.; Stoelinga, P.J.W.

    2008-01-01

    Mandibular defects may result from trauma, inflammatory disease and benign or malignant tumours. Mastication, speech and facial aesthetics are often severely compromised without reconstruction. The goal of mandibular reconstruction is to restore facial form and function, implying repair of

  4. Discrete Wigner Function Reconstruction and Compressed Sensing

    OpenAIRE

    Zhang, Jia-Ning; Fang, Lei; Ge, Mo-Lin

    2011-01-01

    A new reconstruction method for Wigner function is reported for quantum tomography based on compressed sensing. By analogy with computed tomography, Wigner functions for some quantum states can be reconstructed with less measurements utilizing this compressed sensing based method.

  5. Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing

    DEFF Research Database (Denmark)

    Gerlinger, Marco; Rowan, Andrew J.; Horswell, Stuart

    2012-01-01

    .RESULTS: Phylogenetic reconstruction revealed branched evolutionary tumor growth, with 63 to 69% of all somatic mutations not detectable across every tumor region. Intratumor heterogeneity was observed for a mutation within an autoinhibitory domain of the mammalian target of rapamycin (mTOR) kinase, correlating with S6...

  6. Assessment of phylogenetic sensitivity for reconstructing HIV-1 epidemiological relationships.

    Science.gov (United States)

    Beloukas, Apostolos; Magiorkinis, Emmanouil; Magiorkinis, Gkikas; Zavitsanou, Asimina; Karamitros, Timokratis; Hatzakis, Angelos; Paraskevis, Dimitrios

    2012-06-01

    Phylogenetic analysis has been extensively used as a tool for the reconstruction of epidemiological relations for research or for forensic purposes. It was our objective to assess the sensitivity of different phylogenetic methods and various phylogenetic programs to reconstruct epidemiological links among HIV-1 infected patients that is the probability to reveal a true transmission relationship. Multiple datasets (90) were prepared consisting of HIV-1 sequences in protease (PR) and partial reverse transcriptase (RT) sampled from patients with documented epidemiological relationship (target population), and from unrelated individuals (control population) belonging to the same HIV-1 subtype as the target population. Each dataset varied regarding the number, the geographic origin and the transmission risk groups of the sequences among the control population. Phylogenetic trees were inferred by neighbor-joining (NJ), maximum likelihood heuristics (hML) and Bayesian methods. All clusters of sequences belonging to the target population were correctly reconstructed by NJ and Bayesian methods receiving high bootstrap and posterior probability (PP) support, respectively. On the other hand, TreePuzzle failed to reconstruct or provide significant support for several clusters; high puzzling step support was associated with the inclusion of control sequences from the same geographic area as the target population. In contrary, all clusters were correctly reconstructed by hML as implemented in PhyML 3.0 receiving high bootstrap support. We report that under the conditions of our study, hML using PhyML, NJ and Bayesian methods were the most sensitive for the reconstruction of epidemiological links mostly from sexually infected individuals. Copyright © 2012 Elsevier B.V. All rights reserved.

  7. Graft infections after surgical aortic reconstructions

    OpenAIRE

    Berger, P.

    2015-01-01

    Prosthetic vascular grafts are frequently used to reconstruct (part) of the aorta. Every surgical procedure caries a certain risk for infection and when a prosthetic aortic graft is implanted, this may lead to an aortic graft infection (AGI). Endovascular techniques have gradually replaced open surgical reconstructions as first line of treatment for aorto-iliac diseases. Nowadays, open reconstructions are primarily reserved for patients unsuitable for endovascular reconstructions or for redo ...

  8. Craniofacial Reconstruction Evaluation by Geodesic Network

    OpenAIRE

    Zhao, Junli; Liu, Cuiting; Wu, Zhongke; Duan, Fuqing; Wang, Kang; Jia, Taorui; Liu, Quansheng

    2014-01-01

    Craniofacial reconstruction is to estimate an individual’s face model from its skull. It has a widespread application in forensic medicine, archeology, medical cosmetic surgery, and so forth. However, little attention is paid to the evaluation of craniofacial reconstruction. This paper proposes an objective method to evaluate globally and locally the reconstructed craniofacial faces based on the geodesic network. Firstly, the geodesic networks of the reconstructed craniofacial face and the or...

  9. REGEN: Ancestral Genome Reconstruction for Bacteria

    OpenAIRE

    Yang, Kuan; Heath, Lenwood S.; Setubal, João C.

    2012-01-01

    Ancestral genome reconstruction can be understood as a phylogenetic study with more details than a traditional phylogenetic tree reconstruction. We present a new computational system called REGEN for ancestral bacterial genome reconstruction at both the gene and replicon levels. REGEN reconstructs gene content, contiguous gene runs, and replicon structure for each ancestral genome. Along each branch of the phylogenetic tree, REGEN infers evolutionary events, including gene creation and deleti...

  10. Top reconstruction and boosted top experimental overview

    CERN Document Server

    Skinnari, Louise

    2015-01-01

    An overview of techniques used to reconstruct resolved and boosted top quarks is presented. Techniques for resolved top quark reconstruction include kinematic likelihood fitters and pseudo- top reconstruction. Many tools and methods are available for the reconstruction of boosted top quarks, such as jet grooming techniques, jet substructure variables, and dedicated top taggers. Different techniques as used by ATLAS and CMS analyses are described and the performance of different variables and top taggers are shown.

  11. Vertex Reconstruction in ATLAS Run II

    CERN Document Server

    Zhang, Matt; The ATLAS collaboration

    2016-01-01

    Vertex reconstruction is the process of taking reconstructed tracks and using them to determine the locations of proton collisions. In this poster we present the performance of our current vertex reconstruction algorithm, and look at investigations into potential improvements from a new seed finding method.

  12. Mandibular reconstruction using bone allografts

    International Nuclear Information System (INIS)

    Chang Joon Yim

    1999-01-01

    Further understanding of bone healing mechanisms, bone physiology and bone biology, transplantation immunology, and development of Tissue Banking procedures has enabled oral and maxillofacial surgeons to reconstruct even the most difficult bony defects successfully with the preserved allogeneic bone implant. Although it had been known that bone allografts were clinically effective, its application has not been widespread until the reports of Inclan (I 942), Hyatt and Butler (I 950), and Wilson (I 95 1). Tissue Banking provides the surgeon with a readily available, relatively inexpensive, and relatively safe selection of allogeneic bone for clinical use. Now autogenous bone and allogeneic bone implants present a wide variety of surgical options to surgeons, whether used separately or in combination. The surgeons are able to make judicious and fruitful choices, only with a thorough knowledge of the above-mentioned biological principles and skillful techniques. Many kinds of bone grafting techniques have been tried for reconstructing defective osseous tissues of the oral and maxillofacial region, though they have varying degrees of success. The osseous defects which require grafting include those of various size, shape, position, or amount. Unlike autogenous grafts, whose function is to provide osteogenic cells, allografts are purely passive, offering only a matrix for the inductive phase of bone healing. The condition of the recipient bed is of primary importance, because the host must produce all of the essential elements for the bone allograft to become incorporated. Depending on the processing methods of the allogeneic bone, the bone graft materials have different qualities, different healing potentials and different indications. Proper selection of grafts and surgical techniques requires an understanding of graft immunology and the mechanisms of graft healing. The surgeons should know about the biological principles to raise the clinical success rate

  13. Postmastectomy reconstruction: comparative analysis of the psychosocial, functional, and cosmetic effects of transverse rectus abdominis musculocutaneous flap versus breast implant reconstruction.

    Science.gov (United States)

    Cederna, P S; Yates, W R; Chang, P; Cram, A E; Ricciardelli, E J

    1995-11-01

    Over 40,000 postmastectomy breast reconstructions are performed annually. In this study, we investigated the psychosocial, functional, and cosmetic effects of transverse rectus abdominis musculocutaneous (TRAM) flap versus breast implant reconstruction. Thirty-three women who had undergone postmastectomy breast reconstruction were contacted by telephone and agreed to participate in the study. Twenty-two women completed the self-assessment questionnaires regarding their quality of life, psychological symptoms, functional status, body image, and global satisfaction. The TRAM and implant groups contained 8 and 14 patients, respectively. The groups were well matched for age, employment status, marital status, race, religion, and severity of medical and surgical illnesses. The average follow-up was 36 months. Statistical analysis of the responses revealed that women who had undergone TRAM flap reconstruction were more satisfied with how their reconstructed breast felt to the touch (p = .01), and there was a trend toward greater satisfaction with the appearance of their reconstructed breast (p = .08). However, these same patients identified more difficulties as far as functioning at work or school, performing vigorous physical activities, participating in community or religious activities, visiting with relatives, and interacting with male friends (p physical impairments as a result of their reconstruction.

  14. Does breast reconstruction impact the decision of patients to pursue cosmetic surgery?

    Science.gov (United States)

    Hsu, Vivian M; Tahiri, Youssef; Wes, Ari M; Yan, Chen; Selber, Jesse C; Nelson, Jonas A; Kovach, Stephen J; Serletti, Joseph M; Wu, Liza C

    2014-12-01

    Breast reconstruction is an integral component of breast cancer treatment, often aiding in restoring a patient's sense of femininity. However, many patients choose to have subsequent cosmetic surgery. The purpose of this study is to investigate the reasons that motivate patients to have cosmetic surgery after breast reconstruction. The authors performed a retrospective study examining patients who had breast reconstruction and subsequent cosmetic surgery at the University of Pennsylvania Health System between January 2005 and June 2012. This cohort received a questionnaire assessing the influences and impact of their reconstructive and cosmetic procedures. A total of 1,214 patients had breast reconstruction, with 113 patients (9.3%) undergoing cosmetic surgery after reconstruction. Of 42 survey respondents, 35 had autologous breast reconstruction (83.3%). Fifty-two cosmetic procedures were performed in survey respondents, including liposuction (26.9%) and facelift (15.4%). The most common reason for pursuing cosmetic surgery was the desire to improve self-image (n = 26, 61.9%), with 29 (69.0%) patients feeling more self-conscious of appearance after reconstruction. Body image satisfaction was significantly higher after cosmetic surgery (P = 0.0081). Interestingly, a multivariate analysis revealed that patients who experienced an improvement in body image after breast reconstruction were more likely to experience a further improvement after a cosmetic procedure (P = 0.031, OR = 17.83). Patients who were interested in cosmetic surgery prior to reconstruction were also more likely to experience an improvement in body image after cosmetic surgery (P = 0.012, OR = 22.63). Cosmetic surgery may improve body image satisfaction of breast reconstruction patients and help to further meet their expectations.

  15. Reconstructing Holocene temperature and salinity variations in the western Baltic Sea region: a multi-proxy comparison from the Little Belt (IODP Expedition 347, Site M0059

    Directory of Open Access Journals (Sweden)

    U. Kotthoff

    2017-12-01

    Full Text Available Sediment records recovered from the Baltic Sea during Integrated Ocean Drilling Program Expedition 347 provide a unique opportunity to study paleoenvironmental and climate change in central and northern Europe. Such studies contribute to a better understanding of how environmental parameters change in continental shelf seas and enclosed basins. Here we present a multi-proxy-based reconstruction of paleotemperature (both marine and terrestrial, paleosalinity, and paleoecosystem changes from the Little Belt (Site M0059 over the past  ∼  8000 years and evaluate the applicability of inorganic- and organic-based proxies in this particular setting. All salinity proxies (diatoms, aquatic palynomorphs, ostracods, diol index show that lacustrine conditions occurred in the Little Belt until  ∼  7400 cal yr BP. A connection to the Kattegat at this time can thus be excluded, but a direct connection to the Baltic Proper may have existed. The transition to the brackish–marine conditions of the Littorina Sea stage (more saline and warmer occurred within  ∼  200 years when the connection to the Kattegat became established after  ∼  7400 cal yr BP. The different salinity proxies used here generally show similar trends in relative changes in salinity, but often do not allow quantitative estimates of salinity. The reconstruction of water temperatures is associated with particularly large uncertainties and variations in absolute values by up to 8 °C for bottom waters and up to 16 °C for surface waters. Concerning the reconstruction of temperature using foraminiferal Mg  /  Ca ratios, contamination by authigenic coatings in the deeper intervals may have led to an overestimation of temperatures. Differences in results based on the lipid paleothermometers (long chain diol index and TEXL86 can partly be explained by the application of modern-day proxy calibrations to intervals that experienced significant

  16. Nasolabial facial artery and vein as recipient vessels for midface microsurgical reconstruction.

    Science.gov (United States)

    Oh, Suk Joon; Jeon, Man Kyung; Koh, Sung Hoon

    2011-05-01

    Although free flap transfer is commonly performed to reconstruct facial defects, the submandibular facial artery and vein have historically been considered as adequate recipient vessels for microsurgical reconstruction. If the vascular pedicles of the free flap are short, vein grafts are necessary. The purpose of this study was to determine the indications for and effectiveness of using the nasolabial facial vessels for midfacial reconstruction. A retrospective chart review of 6 patients undergoing microsurgical reconstruction for defects of the face revealed 6 free tissue transfers in which the nasolabial facial artery and vein were considered for use as recipient vessels. Flap success rates were evaluated. Six patients (5 men and 1 woman) underwent 6 free flap transfers. Five anterior helix free flaps were used for the reconstruction of defects in the lower third of the nose. Nasal defects were due to trauma in 4 patients and squamous cell carcinoma in 1 patient. In 1 neurofibromatosis type 1 case, a radial forearm flap was used for reconstruction of the left orbital defect. The facial artery and vein in the nasolabial fold were used as the recipient artery and vein in every case. The mean length of follow-up was 5.8 years. All flaps survived. All patients were satisfied with the degree of aesthetic improvement after surgery.Use of the facial artery and vein in the nasolabial fold for facial reconstruction is reliable and safe. The nasolabial facial artery and vein should be considered as primary recipient vessels in microsurgical reconstruction of the midface.

  17. Atmospheric muons reconstruction with Antares

    International Nuclear Information System (INIS)

    Melissas, M.

    2007-09-01

    The ANTARES collaboration is building a neutrino telescope in the Mediterranean Sea. This detector contains 900 photomultiplier tubes, dispatched on 12 lines, in order to detect Cerenkov light from muon induced by neutrino interactions in the the vicinity of the detector. Currently the first 5 lines have been deployed. A first task consists in studying the stability of the detector calibration, which is a necessary step to understand the detector response. Then we studied optical properties of water, for this we developed a reconstruction method dedicated to LED Beacon. The extracted parameters are compatible with earlier measurements. A quality criteria to reject badly reconstructed track has been developed based on the likelihood of the tracks fit versus point fit. This has been applied to real data and a preliminary analysis of atmospheric muons with a 5-lines detector is performed. (author)

  18. The Algebraic Reconstruction Technique (ART)

    International Nuclear Information System (INIS)

    Raparia, D.; Alessi, J.; Kponou, A.

    1997-01-01

    Projections of charged particle beam current density (profiles) are frequently used as a measure of beam position and size. In conventional practice only two projections, usually horizontal and vertical, are measured. This puts a severe limit on the detail of information that can be achieved. A third projection provides a significant improvement. The Algebraic Reconstruction Technique (ART) uses three or more projections to reconstruct 3-dimensional density profiles. At the 200 MeV H-linac, we have used this technique to measure beam density, and it has proved very helpful, especially in helping determine if there is any coupling present in x-y phase space. We will present examples of measurements of current densities using this technique

  19. Phylogenetic reconstruction methods: an overview.

    Science.gov (United States)

    De Bruyn, Alexandre; Martin, Darren P; Lefeuvre, Pierre

    2014-01-01

    Initially designed to infer evolutionary relationships based on morphological and physiological characters, phylogenetic reconstruction methods have greatly benefited from recent developments in molecular biology and sequencing technologies with a number of powerful methods having been developed specifically to infer phylogenies from macromolecular data. This chapter, while presenting an overview of basic concepts and methods used in phylogenetic reconstruction, is primarily intended as a simplified step-by-step guide to the construction of phylogenetic trees from nucleotide sequences using fairly up-to-date maximum likelihood methods implemented in freely available computer programs. While the analysis of chloroplast sequences from various Vanilla species is used as an illustrative example, the techniques covered here are relevant to the comparative analysis of homologous sequences datasets sampled from any group of organisms.

  20. Direct reconstruction of dark energy.

    Science.gov (United States)

    Clarkson, Chris; Zunckel, Caroline

    2010-05-28

    An important issue in cosmology is reconstructing the effective dark energy equation of state directly from observations. With so few physically motivated models, future dark energy studies cannot only be based on constraining a dark energy parameter space. We present a new nonparametric method which can accurately reconstruct a wide variety of dark energy behavior with no prior assumptions about it. It is simple, quick and relatively accurate, and involves no expensive explorations of parameter space. The technique uses principal component analysis and a combination of information criteria to identify real features in the data, and tailors the fitting functions to pick up trends and smooth over noise. We find that we can constrain a large variety of w(z) models to within 10%-20% at redshifts z≲1 using just SNAP-quality data.

  1. Structure Assisted Compressed Sensing Reconstruction of Undersampled AFM Images

    DEFF Research Database (Denmark)

    Oxvig, Christian Schou; Arildsen, Thomas; Larsen, Torben

    2017-01-01

    reconstruction algorithms that enables the use of our proposed structure model in the reconstruction process. Through a large set of reconstructions, the general reconstruction capability improvement achievable using our structured model is shown both quantitatively and qualitatively. Specifically, our...

  2. Mastectomy Skin Necrosis After Breast Reconstruction: A Comparative Analysis Between Autologous Reconstruction and Implant-Based Reconstruction.

    Science.gov (United States)

    Sue, Gloria R; Lee, Gordon K

    2018-05-01

    Mastectomy skin necrosis is a significant problem after breast reconstruction. We sought to perform a comparative analysis on this complication between patients undergoing autologous breast reconstruction and patients undergoing 2-stage expander implant breast reconstruction. A retrospective review was performed on consecutive patients undergoing autologous breast reconstruction or 2-stage expander implant breast reconstruction by the senior author from 2006 through 2015. Patient demographic factors including age, body mass index, history of diabetes, history of smoking, and history of radiation to the breast were collected. Our primary outcome measure was mastectomy skin necrosis. Fisher exact test was used for statistical analysis between the 2 patient cohorts. The treatment patterns of mastectomy skin necrosis were then analyzed. We identified 204 patients who underwent autologous breast reconstruction and 293 patients who underwent 2-stage expander implant breast reconstruction. Patients undergoing autologous breast reconstruction were older, heavier, more likely to have diabetes, and more likely to have had prior radiation to the breast compared with patients undergoing implant-based reconstruction. The incidence of mastectomy skin necrosis was 30.4% of patients in the autologous group compared with only 10.6% of patients in the tissue expander group (P care in the autologous group, only 3.2% were treated with local wound care in the tissue expander group (P skin necrosis is significantly more likely to occur after autologous breast reconstruction compared with 2-stage expander implant-based breast reconstruction. Patients with autologous reconstructions are more readily treated with local wound care compared with patients with tissue expanders, who tended to require operative treatment of this complication. Patients considering breast reconstruction should be counseled appropriately regarding the differences in incidence and management of mastectomy skin

  3. Reconstruction of Attosecond Pulse Trains

    Science.gov (United States)

    Mairesse, Y.; Agostini, P.; Breger, P.; Carre, B.; Merdji, A.; Monchicourt, P.; Salieres, P.; Varju, K.; Gustafsson, E.; Johnsson, P.; Mauritsson, J.; Remetter, T.; L'Huillier, A.; Frasinski, L. J.

    2006-11-01

    We show that it is possible to completely reconstruct the intensity profile of the attosecond bursts emitted as a superposition of high harmonics from a series of RABBIT measurements carried out at different infrared intensities. The electric field can be recovered from a measurement of the central harmonic chirp. Timing, chirp and variations of the carrier-to-envelope phase of the attosecond bursts are accessible to the proposed method.

  4. Hanford Environmental Dose Reconstruction Project

    International Nuclear Information System (INIS)

    Cannon, S.D.; Finch, S.M.

    1992-10-01

    The objective of the Hanford Environmental Dose Reconstruction (HEDR) Project is to estimate the radiation doses that individuals and populations could have received from nuclear operations at Hanford since 1944. The independent Technical Steering Panel (TSP) provides technical direction. The project is divided into the following technical tasks. These tasks correspond to the path radionuclides followed from release to impact on humans (dose estimates):Source Terms, Environmental Transport, Environmental Monitoring Data, Demography, Food Consumption, and Agriculture, and Environmental Pathways and Dose Estimates

  5. Computed laminography and reconstruction algorithm

    International Nuclear Information System (INIS)

    Que Jiemin; Cao Daquan; Zhao Wei; Tang Xiao

    2012-01-01

    Computed laminography (CL) is an alternative to computed tomography if large objects are to be inspected with high resolution. This is especially true for planar objects. In this paper, we set up a new scanning geometry for CL, and study the algebraic reconstruction technique (ART) for CL imaging. We compare the results of ART with variant weighted functions by computer simulation with a digital phantom. It proves that ART algorithm is a good choice for the CL system. (authors)

  6. Colour reconstruction of underwater images

    OpenAIRE

    Hoth, Julian; Kowalczyk, Wojciech

    2017-01-01

    Objects look very different in the underwater environment compared to their appearance in sunlight. Images with correct colouring simplify the detection of underwater objects and may allow the use of visual SLAM algorithms developed for land-based robots underwater. Hence, image processing is required. Current algorithms focus on the colour reconstruction of scenery at diving depth where different colours can still be distinguished. At greater depth this is not the case. In this study it is i...

  7. A Reduction of the Graph Reconstruction Conjecture

    Directory of Open Access Journals (Sweden)

    Monikandan S.

    2014-08-01

    Full Text Available A graph is said to be reconstructible if it is determined up to isomor- phism from the collection of all its one-vertex deleted unlabeled subgraphs. Reconstruction Conjecture (RC asserts that all graphs on at least three vertices are reconstructible. In this paper, we prove that interval-regular graphs and some new classes of graphs are reconstructible and show that RC is true if and only if all non-geodetic and non-interval-regular blocks G with diam(G = 2 or diam(Ḡ = diam(G = 3 are reconstructible

  8. BES-II fast data reconstruction

    International Nuclear Information System (INIS)

    Rong Gang; Zhang Jiawen; Guo Yiqing; Zhang Shaoqiang; Zhao Dixin

    2002-01-01

    The BES-II fast data reconstruction is reported. Based on PC FARM and/or a 'Distributed Clustered Linux PC System', BES-II fast data reconstruction system is set up. With this system the BES-II data can be fully reconstructed in about 20 minutes after data collection. It takes only 12 minutes to fully reconstruct 30000 events, collected with BES-II detector at BEPC Collider, with a P III-800 PC. The detector performance can be examined based on fully reconstructed data in about 20 minutes after data taking in the BES-II experiment

  9. Reconstruction of FXR Beam Conditions

    International Nuclear Information System (INIS)

    Nexen, W E; Scarpetti, R D; Zentler, J

    2001-01-01

    Beam-envelope radius, envelope angle, and beam emittance can be derived from measurements of beam radius for at least three different transport conditions. We have used this technique to reconstruct exit parameters from the FXR injector and accelerator. We use a diamagnetic loop (DML) to measure the magnetic moment of the high current beam. With no assumptions about radial profile, we can derive the beam mean squire radius from the moment under certain easily met conditions. Since it is this parameter which is required for the reconstruction, it is evident that the DML is the ideal diagnostic for this technique. The simplest application of this technique requires at least three shots for a reconstruction but in reality requires averaging over many more shots because of shot to shot variation. Since DML measurements do not interfere with the beam, single shot time resolved measurements of the beam parameters appear feasible if one uses an array of at least three DMLs separated by known transport conditions

  10. Network reconstruction via graph blending

    Science.gov (United States)

    Estrada, Rolando

    2016-05-01

    Graphs estimated from empirical data are often noisy and incomplete due to the difficulty of faithfully observing all the components (nodes and edges) of the true graph. This problem is particularly acute for large networks where the number of components may far exceed available surveillance capabilities. Errors in the observed graph can render subsequent analyses invalid, so it is vital to develop robust methods that can minimize these observational errors. Errors in the observed graph may include missing and spurious components, as well fused (multiple nodes are merged into one) and split (a single node is misinterpreted as many) nodes. Traditional graph reconstruction methods are only able to identify missing or spurious components (primarily edges, and to a lesser degree nodes), so we developed a novel graph blending framework that allows us to cast the full estimation problem as a simple edge addition/deletion problem. Armed with this framework, we systematically investigate the viability of various topological graph features, such as the degree distribution or the clustering coefficients, and existing graph reconstruction methods for tackling the full estimation problem. Our experimental results suggest that incorporating any topological feature as a source of information actually hinders reconstruction accuracy. We provide a theoretical analysis of this phenomenon and suggest several avenues for improving this estimation problem.

  11. A Comparison of Manual Neuronal Reconstruction from Biocytin Histology or 2-Photon Imaging: Morphometry and Computer Modeling

    Directory of Open Access Journals (Sweden)

    Arne Vladimir Blackman

    2014-07-01

    Full Text Available Accurate 3D reconstruction of neurons is vital for applications linking anatomy and physiology. Reconstructions are typically created using Neurolucida after biocytin histology (BH. An alternative inexpensive and fast method is to use freeware such as Neuromantic to reconstruct from fluorescence imaging (FI stacks acquired using 2-photon laser-scanning microscopy during physiological recording. We compare these two methods with respect to morphometry, cell classification, and multicompartmental modeling in the NEURON simulation environment. Quantitative morphological analysis of the same cells reconstructed using both methods reveals that whilst biocytin reconstructions facilitate tracing of more distal collaterals, both methods are comparable in representing the overall morphology: automated clustering of reconstructions from both methods successfully separates neocortical basket cells from pyramidal cells but not BH from FI reconstructions. BH reconstructions suffer more from tissue shrinkage and compression artifacts than FI reconstructions do. FI reconstructions, on the other hand, consistently have larger process diameters. Consequently, significant differences in NEURON modeling of excitatory post-synaptic potential (EPSP forward propagation are seen between the two methods, with FI reconstructions exhibiting smaller depolarizations. Simulated action potential backpropagation (bAP, however, is indistinguishable between reconstructions obtained with the two methods. In our hands, BH reconstructions are necessary for NEURON modeling and detailed morphological tracing, and thus remain state of the art, although they are more labor intensive, more expensive, and suffer from a higher failure rate. However, for a subset of anatomical applications such as cell type identification, FI reconstructions are superior, because of indistinguishable classification performance with greater ease of use, essentially 100% success rate, and lower cost.

  12. Pulmonary sequestration: diagnosis with three dimensional reconstruction using spiral CT

    International Nuclear Information System (INIS)

    Nie Yongkang; Zhao Shaohong; Cai Zulong; Yang Li; Zhao Hong; Zhang Ailian; Huang Hui

    2003-01-01

    Objective: To evaluate the role of three dimensional (3D) reconstruction using spiral CT in the diagnosis of pulmonary sequestration. Methods: Ten patients with pulmonary sequestration were analyzed. The diagnoses were confirmed by angiography in 2 patients, by operation in 2 patients, and by CT angiography in 6 patients. All patients were examined with Philips SR 7000 or GE Lightspeed Plus scanner. CT images were transferred to a workstation and 3D reconstruction was performed. All images were reviewed and analyzed by two radiologists. Results: Among 10 patients, the pulmonary sequestration was in the right lower lobe in 1 patient and in the left lower lobe in 9 patients. Anomalous systemic arteries originated from thoracic aorta in 8 patients and from celiac artery in 2 patients. On plain CT scan, there were 4 patients with patchy opacities, 3 patients with hilar mass accompanying vascular engorgement and profusion in adjacent parenchyma, 2 patients with finger-like appendage surrounded by hyper-inflated lung, and 1 patient with lung mass-like lesion. Enhanced CT revealed anomalous systemic arteries in 9 patients and drainage vein in 7 patients. Maximum intensity projection (MIP) and curvilinear reconstruction could depict the abnormal systemic artery and drainage vein in sequestration. Surface shadow display (SSD) and volume rendering (VR) could delineate the anomalous systemic artery. Conclusion: 3D reconstruction with enhanced spiral CT can depict anomalous systemic artery and drainage vein and it is the first method of choice in diagnosing pulmonary sequestration

  13. Cryo-EM Structure Determination Using Segmented Helical Image Reconstruction.

    Science.gov (United States)

    Fromm, S A; Sachse, C

    2016-01-01

    Treating helices as single-particle-like segments followed by helical image reconstruction has become the method of choice for high-resolution structure determination of well-ordered helical viruses as well as flexible filaments. In this review, we will illustrate how the combination of latest hardware developments with optimized image processing routines have led to a series of near-atomic resolution structures of helical assemblies. Originally, the treatment of helices as a sequence of segments followed by Fourier-Bessel reconstruction revealed the potential to determine near-atomic resolution structures from helical specimens. In the meantime, real-space image processing of helices in a stack of single particles was developed and enabled the structure determination of specimens that resisted classical Fourier helical reconstruction and also facilitated high-resolution structure determination. Despite the progress in real-space analysis, the combination of Fourier and real-space processing is still commonly used to better estimate the symmetry parameters as the imposition of the correct helical symmetry is essential for high-resolution structure determination. Recent hardware advancement by the introduction of direct electron detectors has significantly enhanced the image quality and together with improved image processing procedures has made segmented helical reconstruction a very productive cryo-EM structure determination method. © 2016 Elsevier Inc. All rights reserved.

  14. Continuous analog of multiplicative algebraic reconstruction technique for computed tomography

    Science.gov (United States)

    Tateishi, Kiyoko; Yamaguchi, Yusaku; Abou Al-Ola, Omar M.; Kojima, Takeshi; Yoshinaga, Tetsuya

    2016-03-01

    We propose a hybrid dynamical system as a continuous analog to the block-iterative multiplicative algebraic reconstruction technique (BI-MART), which is a well-known iterative image reconstruction algorithm for computed tomography. The hybrid system is described by a switched nonlinear system with a piecewise smooth vector field or differential equation and, for consistent inverse problems, the convergence of non-negatively constrained solutions to a globally stable equilibrium is guaranteed by the Lyapunov theorem. Namely, we can prove theoretically that a weighted Kullback-Leibler divergence measure can be a common Lyapunov function for the switched system. We show that discretizing the differential equation by using the first-order approximation (Euler's method) based on the geometric multiplicative calculus leads to the same iterative formula of the BI-MART with the scaling parameter as a time-step of numerical discretization. The present paper is the first to reveal that a kind of iterative image reconstruction algorithm is constructed by the discretization of a continuous-time dynamical system for solving tomographic inverse problems. Iterative algorithms with not only the Euler method but also the Runge-Kutta methods of lower-orders applied for discretizing the continuous-time system can be used for image reconstruction. A numerical example showing the characteristics of the discretized iterative methods is presented.

  15. Micromorphology of Paleosols of the Marília Formation and their Significance in the Paleoenvironmental Evolution of the Bauru Basin, Upper Cretaceous, Southeastern Brazil

    Directory of Open Access Journals (Sweden)

    Márcio Luiz da Silva

    Full Text Available ABSTRACT Deduction of associated paleoenvironments and paleoclimate, definition of the chronosequence of paleosols, and paleogeographic reconstruction have become possible through the application of micromorphology in paleopedology. Micromorphology has also been useful in recognition of weathering processes and definition of minerals formed in succession. In this respect, the objective of this study was to identify the development of pedogenic processes and discuss their significance in the paleoclimate evolution of the Marília Formation (Maastrichtian of Bauru Basin. Three sections of the Marília Formation (A1, A2, and A3 were described, comprising nine profiles. Micromorphologic al analysis was carried out according to the specialized literature. In the Marília Formation, the paleosols developed in sandstones have argillic (Btkm, Bt and carbonate (Bk horizons with different degrees of cementation, forming mainly calcretes. The evolution of pedogenic processes, in light of micromorphological analysis, evidenced three moments or stages for the genesis of paleosols with Bkm, Btk, and Bt horizons, respectively. In the Maastrichtian in the Bauru Basin, the paleosols with Bkm are older and more arid environments, and those with Bt were formed in wetter weather, but not enough to lead to the genesis of enaulic-related distributions, typical of current Oxisols.

  16. Spiral scan long object reconstruction through PI line reconstruction

    International Nuclear Information System (INIS)

    Tam, K C; Hu, J; Sourbelle, K

    2004-01-01

    The response of a point object in a cone beam (CB) spiral scan is analysed. Based on the result, a reconstruction algorithm for long object imaging in spiral scan cone beam CT is developed. A region-of-interest (ROI) of the long object is scanned with a detector smaller than the ROI, and a portion of it can be reconstructed without contamination from overlaying materials. The top and bottom surfaces of the ROI are defined by two sets of PI lines near the two ends of the spiral path. With this novel definition of the top and bottom ROI surfaces and through the use of projective geometry, it is straightforward to partition the cone beam image into regions corresponding to projections of the ROI, the overlaying objects or both. This also simplifies computation at source positions near the spiral ends, and makes it possible to reduce radiation exposure near the spiral ends substantially through simple hardware collimation. Simulation results to validate the algorithm are presented

  17. Health insurance coverage and racial disparities in breast reconstruction after mastectomy.

    Science.gov (United States)

    Shippee, Tetyana P; Kozhimannil, Katy B; Rowan, Kathleen; Virnig, Beth A

    2014-01-01

    Breast reconstruction after mastectomy offers clinical, cosmetic, and psychological benefits compared with mastectomy alone. Although reconstruction rates have increased, racial/ethnic disparities in breast reconstruction persist. Insurance coverage facilitates access to care, but few studies have examined whether health insurance ameliorates disparities. We used the Nationwide Inpatient Sample for 2002 through 2006 to examine the relationships between health insurance coverage, race/ethnicity, and breast reconstruction rates among women who underwent mastectomy for breast cancer. We examined reconstruction rates as a function of the interaction of race and the primary payer (self-pay, private health insurance, government) while controlling for patient comorbidity, and we used generalized estimating equations to account for clustering and hospital characteristics. Minority women had lower breast reconstruction rates than White women (adjusted odds ratio [AOR], 0.57 for African American; AOR, 0.70 for Hispanic; AOR, 0.45 for Asian; p women (AOR, 0.33) and those with public coverage were less likely to undergo reconstruction (AOR, 0.35; p women. Racial/ethnic disparities were less prominent within insurance types. Minority women, whether privately or publicly insured, had lower odds of undergoing reconstruction than White women. Among those without insurance, reconstruction rates did not differ by race/ethnicity. Insurance facilitates access to care, but does not eliminate racial/ethnic disparities in reconstruction rates. Our findings-which reveal persistent health care disparities not explained by patient health status-should prompt efforts to promote both access to and use of beneficial covered services for women with breast cancer. Copyright © 2014 Jacobs Institute of Women's Health. Published by Elsevier Inc. All rights reserved.

  18. Mandible reconstruction: History, state of the art and persistent problems.

    Science.gov (United States)

    Ferreira, José J; Zagalo, Carlos M; Oliveira, Marta L; Correia, André M; Reis, Ana R

    2015-06-01

    Mandibular reconstruction has been experiencing an amazing evolution. Several different approaches are used to reconstruct this bone and therefore have a fundamental role in the recovery of oral functions. This review aims to highlight the persistent problems associated with the approaches identified, whether bone grafts or prosthetic devices are used. A brief summary of the historical evolution of the surgical procedures is presented, as well as an insight into possible future pathways. A literature review was conducted from September to December 2012 using the PubMed database. The keyword used was "mandible reconstruction." Articles published in the last three years were included as well as the relevant references from those articles and the "historical articles" were referred. This research resulted in a monograph that this article aims to summarize. Titanium plates, bone grafts, pediculate flaps, free osteomyocutaneous flaps, rapid prototyping, and tissue engineering strategies are some of the identified possibilities. The classical approaches present considerable associated morbidity donor-site-related problems. Research that results in the development of new prosthetics devices is needed. A new prosthetic approach could minimize the identified problems and offer the patients more predictable, affordable, and comfortable solutions. This review, while affirming the evolution and the good results found with the actual approaches, emphasizes the negative aspects that still subsist. Thus, it shows that mandible reconstruction is not a closed issue. On the contrary, it remains as a research field where new findings could have a direct positive impact on patients' life quality. The identification of the persistent problems reveals the characteristics to be considered in a new prosthetic device. This could overcome the current difficulties and result in more comfortable solutions. Medical teams have the responsibility to keep patients informed about the predictable

  19. Reconstructive options in pelvic tumours

    Directory of Open Access Journals (Sweden)

    Mayilvahanan N

    2005-01-01

    Full Text Available Background: Pelvic tumours present a complex problem. It is difficult to choose between limb salvage and hemipelvectomy. Method: Forty three patients of tumours of pelvis underwent limb salvage resection with reconstruction in 32 patients. The majority were chondrosarcomas (20 cases followed by Ewing sarcoma. Stage II B was the most common stage in malignant lesions and all the seven benign lesions were aggressive (B3. Surgical margins achieved were wide in 31 and marginal in 12 cases. Ilium was involved in 51% of cases and periacetabular involvement was seen in 12 patients. The resections done were mostly of types I &II of Enneking′s classification of pelvic resection. Arthrodesis was attempted in 24 patients. Customized Saddle prosthesis was used in seven patients and no reconstruction in 12 patients. Adjuvant chemotherapy was given to all high-grade malignant tumours, combined with radiotherapy in 7 patients. Results: With a mean follow up of 48.5 months and one patient lost to follow up, the recurrence rate among the evaluated cases was 16.6%. Oncologically, 30 patients were continuously disease free with 7 local recurrences and 4 deaths due to disseminated disease and 2 patients died of other causes. During the initial years, satisfactory functional results were achieved with prosthetic replacement. Long-term functional result of 36 patients who were alive at the time of latest follow up was satisfactory in 75% who underwent arthrodesis and in those where no reconstruction was used. We also describe a method of new classification of pelvic resections that clarifies certain shortcomings of the previous systems of classification. Conclusion: Selection of a procedure depends largely on the patient factors, the tumour grade, the resultant defect and the tissue factors. Resection with proper margins gives better functional and oncological results

  20. How well suited are maar lakes of Madagascar for palaeoenvironmental multi-proxy reconstructions? - First results from shallow seismic, sedimentological and hydrological investigations in Central and Northwest Madagascar.

    Science.gov (United States)

    Daut, Gerhard; Jasmin Krahn, Kim; Rabhobisoa, Jean-Jacques; Ornella Moanazafy, Sergénie; Haberzettl, Torsten; Kasper, Thomas; Mäusbacher, Roland; Schwalb, Antje

    2017-04-01

    high contents in organic matter, indicate a mixed signal of terrestrial input and intra-lake productivity, with sedimentation most probably under anoxic conditions. The marine site, in contrast, is influenced by tides, and characterized by coral debris in the shallow parts of the maar and grey silty sediments in the central part with a water depth of 5 m during low tide. However, initial results indicate that a combination of these maar lakes along climatic gradients hold a high potential for paleoenvironmental reconstructions even on long timescales.

  1. Bayes reconstruction of missing teeth

    DEFF Research Database (Denmark)

    Sporring, Jon; Jensen, Katrine Hommelhoff

    2008-01-01

    contains two major parts: A statistical model of a selection of tooth shapes and a reconstruction of missing data. We use a training set consisting of 3D scans of dental cast models obtained with a laser scanner, and we have build a model of the shape variability of the teeth, their neighbors...... or equivalently noise elimination and for data analysis. However for small sets of high dimensional data, the log-likelihood estimator for the covariance matrix is often far from convergence, and therefore reliable models must be obtained by use of prior information. We propose a natural and intrinsic...

  2. Hanford Environmental Dose Reconstruction Project

    International Nuclear Information System (INIS)

    Finch, S.M.; McMakin, A.H.

    1991-04-01

    The objective of the Hanford Environmental Dose Reconstruction Project is to estimate the radiation doses that populations could have received from nuclear operations at Hanford since 1944. The project is being managed and conducted by the Pacific Northwest Laboratory (PNL) under the direction of an independent Technical Steering Panel (TSP). The project is divided into the following technical tasks. These tasks correspond to the path radionuclides followed, from released to impact on humans (dose estimates): source terms; environmental transport; environmental monitoring data; demographics, agriculture, food habits; and, environmental pathways and dose estimates

  3. Economics of abdominal wall reconstruction.

    Science.gov (United States)

    Bower, Curtis; Roth, J Scott

    2013-10-01

    The economic aspects of abdominal wall reconstruction are frequently overlooked, although understandings of the financial implications are essential in providing cost-efficient health care. Ventral hernia repairs are frequently performed surgical procedures with significant economic ramifications for employers, insurers, providers, and patients because of the volume of procedures, complication rates, the significant rate of recurrence, and escalating costs. Because biological mesh materials add significant expense to the costs of treating complex abdominal wall hernias, the role of such costly materials needs to be better defined to ensure the most cost-efficient and effective treatments for ventral abdominal wall hernias. Copyright © 2013 Elsevier Inc. All rights reserved.

  4. Cartilage grafting in nasal reconstruction.

    Science.gov (United States)

    Immerman, Sara; White, W Matthew; Constantinides, Minas

    2011-02-01

    Nasal reconstruction after resection for cutaneous malignancies poses a unique challenge to facial plastic surgeons. The nose, a unique 3-D structure, not only must remain functional but also be aesthetically pleasing to patients. A complete understanding of all the layers of the nose and knowledge of available cartilage grafting material is necessary. Autogenous material, namely septal, auricular, and costal cartilage, is the most favored material in a free cartilage graft or a composite cartilage graft. All types of material have advantages and disadvantages that should guide the most appropriate selection to maximize the functional and cosmetic outcomes for patients. Copyright © 2011 Elsevier Inc. All rights reserved.

  5. Hanford Environmental Dose Reconstruction Project

    International Nuclear Information System (INIS)

    Finch, S.M.; McMakin, A.H.

    1992-06-01

    The objective of the Hanford Environmental Dose Reconstruction Project is to estimate the radiation doses that individuals and populations could have received from nuclear operations at Hanford since 1944. The project is being managed and conducted by the Battelle Pacific Northwest Laboratories under contract with the Centers for Disease Control. The independent Technical Steering Panel (TSP) provides technical direction. The project is divided into the following technical tasks. These tasks correspond to the path radionuclides followed, from release to impact on humans (dose estimates): source terms; environmental transport; environmental monitoring data; demography, food consumption, and agriculture; environmental pathways and dose estimates

  6. Ancient limpet shells as paleo-environmental and ethno-archaeological archives: the case of Beniguet Island's shell middens (Iroise Sea)

    Science.gov (United States)

    Cudennec, Jean-François; Stephan, Pierre; Dupont, Catherine; Pailler, Yvan; Thébault, Julien; Schöne, Bernd; Paulet, Yves-Marie

    2017-04-01

    During the winter 2013-2014, severe storm events caused a coastal erosion in the southern part of the Beniguet Island (Brittany, France). The associated shoreline retreat had uncovered three layers of shell middens interbedded into an aeolian sand dune deposit. From several radiocarbon dating crossed with the study of ceramic and lithic contents, the shell middens were dated to the Final Neolithic (2400 BC), the Early Bronze Age (2000 BC) and the Early Middle Age (800 AD) respectively. This site offers a unique opportunity to collect two types of information: palaeo-environmental (palaeo-temperature of sea water) and archaeological (determination of harvest season). In this study, we focus on gastropod of the genus Patella which represent 90% of the remains found in this midden. This organism is potentially a highly valuable archive for these environments because they are intertidal and relatively sedentary. We studied the growth rings in the outer calcitic layer of individual limpet shells from the Neolithic, Early Bronze Age and Present Day populations. We report here the results of δ18O analyses. We found a similarity between the reconstructed palaeo-temperature in the Neolithic and the Present periods (between 13 and 14°C in summer and about 8 - 9°C in winter). However, palaeo-temperatures of the Early Bronze Age shells are significantly lower in winter (5 - 6 °C). Moreover, the initial results of the δ18O analyses at the margin of these shells showed that they were harvested during a specific season (end of spring or early summer). Additional work will be done to address questions about shell growth dynamics of these species. These results confirm the interest of using ancient limpet shells as palaeo-environmental and archaeological archives.

  7. New palaeoenvironmental and palaeoclimatic reconstructions for the Middle Palaeolithic site of Cuesta de la Bajada (Teruel, eastern Spain) inferred from the amphibian and squamate reptile assemblages

    Science.gov (United States)

    Blain, Hugues-Alexandre; Ruiz Zapata, Maria Blanca; Gil García, Maria José; Sesé, Carmen; Santonja, Manuel; Pérez-González, Alfredo

    2017-10-01

    In the eastern Iberian Peninsula, the archaeological site of Cuesta de la Bajada (Teruel, Spain) has produced some of the earliest evidence of Middle Paleolithic stone tool traditions together with evidence of equid and cervid carcasses defleshed by hominins. Based on the numerical age of 317-240 ka derived from OSL, ESR and AAR dating methods for the lower part of the Cuesta de la Bajada sedimentological sequence (level CB3), as well as the biochronological inferences for the small and large mammal associations, the site can be attributed to Marine Isotope Stage (MIS) 8 or the end of MIS 9. As amphibians and reptiles have precise environmental and climatic requirements and do not differ at species level from the extant herpetofauna of the Iberian Peninsula, they can contribute to the reconstruction of the landscape and climate. In this paper, the fossil amphibians and squamate reptiles from Cuesta de la Bajada are studied for the first time. The mutual ecogeographic range and habitat weighting methods were applied to the herpetofaunal assemblages to estimate quantitative data for the landscape and climate reconstructions. The climate is shown to have been colder and wetter than today in the interior of eastern Spain, with mean annual temperature up to 2.5 °C lower and mean annual precipitation slightly higher than at present. The monthly climatic reconstruction shows differences in the distribution of precipitation over the course of the year, with more abundant precipitation from late autumn to spring (i.e. from October to May), and more or less similar precipitation to today during the summer months (July and August). This suggests there was stronger rainfall seasonality between winter and summer than currently occurs. The paleoenvironmental reconstruction based on the herpetofaunal assemblage depicts a poorly forested (15-20%) patchy landscape with a large representation of dry meadows and scrubland habitats together with well-evidenced aquatic habitats. These

  8. REGEN: Ancestral Genome Reconstruction for Bacteria

    Directory of Open Access Journals (Sweden)

    João C. Setubal

    2012-07-01

    Full Text Available Ancestral genome reconstruction can be understood as a phylogenetic study with more details than a traditional phylogenetic tree reconstruction. We present a new computational system called REGEN for ancestral bacterial genome reconstruction at both the gene and replicon levels. REGEN reconstructs gene content, contiguous gene runs, and replicon structure for each ancestral genome. Along each branch of the phylogenetic tree, REGEN infers evolutionary events, including gene creation and deletion and replicon fission and fusion. The reconstruction can be performed by either a maximum parsimony or a maximum likelihood method. Gene content reconstruction is based on the concept of neighboring gene pairs. REGEN was designed to be used with any set of genomes that are sufficiently related, which will usually be the case for bacteria within the same taxonomic order. We evaluated REGEN using simulated genomes and genomes in the Rhizobiales order.

  9. Simulation and Track Reconstruction for Beam Telescopes

    CERN Document Server

    Maqbool, Salman

    2017-01-01

    Beam telescopes are an important tool to test new detectors under development in a particle beam. To test these novel detectors and determine their properties, the particle tracks need to be reconstructed from the known detectors in the telescope. Based on the reconstructed track, its predicted position on the Device under Test (DUT) are compared with the actual hits on the DUT. Several methods exist for track reconstruction, but most of them do not account for the effects of multiple scattering. General Broken Lines is one such algorithm which incorporates these effects during reconstruction. The aim of this project was to simulate the beam telescope and extend the track reconstruction framework for the FE-I4 telescope, which takes these effects into account. Section 1 introduces the problem, while section 2 focuses on beam telescopes. This is followed by the Allpix2 simulation framework in Section 3. And finally, Section 4 introduces the Proteus track reconstruction framework along with the General Broken ...

  10. Quadriceps Tendon Autograft Medial Patellofemoral Ligament Reconstruction.

    Science.gov (United States)

    Fink, Christian; Steensen, Robert; Gföller, Peter; Lawton, Robert

    2018-06-01

    Critically evaluate the published literature related to quadriceps tendon (QT) medial patellofemoral ligament (MPFL) reconstruction. Hamstring tendon (HT) MPFL reconstruction techniques have been shown to successfully restore patella stability, but complications including patella fracture are reported. Quadriceps tendon (QT) reconstruction techniques with an intact graft pedicle on the patella side have the advantage that patella bone tunnel drilling and fixation are no longer needed, reducing risk of patella fracture. Several QT MPFL reconstruction techniques, including minimally invasive surgical (MIS) approaches, have been published with promising clinical results and fewer complications than with HT techniques. Parallel laboratory studies have shown macroscopic anatomy and biomechanical properties of QT are more similar to native MPFL than hamstring (HS) HT, suggesting QT may more accurately restore native joint kinematics. Quadriceps tendon MPFL reconstruction, via both open and MIS techniques, have promising clinical results and offer valuable alternatives to HS grafts for primary and revision MPFL reconstruction in both children and adults.

  11. Computer Based Road Accident Reconstruction Experiences

    Directory of Open Access Journals (Sweden)

    Milan Batista

    2005-03-01

    Full Text Available Since road accident analyses and reconstructions are increasinglybased on specific computer software for simulationof vehicle d1iving dynamics and collision dynamics, and forsimulation of a set of trial runs from which the model that bestdescribes a real event can be selected, the paper presents anoverview of some computer software and methods available toaccident reconstruction experts. Besides being time-saving,when properly used such computer software can provide moreauthentic and more trustworthy accident reconstruction, thereforepractical experiences while using computer software toolsfor road accident reconstruction obtained in the TransportSafety Laboratory at the Faculty for Maritime Studies andTransport of the University of Ljubljana are presented and discussed.This paper addresses also software technology for extractingmaximum information from the accident photo-documentationto support accident reconstruction based on the simulationsoftware, as well as the field work of reconstruction expertsor police on the road accident scene defined by this technology.

  12. REGEN: Ancestral Genome Reconstruction for Bacteria.

    Science.gov (United States)

    Yang, Kuan; Heath, Lenwood S; Setubal, João C

    2012-07-18

    Ancestral genome reconstruction can be understood as a phylogenetic study with more details than a traditional phylogenetic tree reconstruction. We present a new computational system called REGEN for ancestral bacterial genome reconstruction at both the gene and replicon levels. REGEN reconstructs gene content, contiguous gene runs, and replicon structure for each ancestral genome. Along each branch of the phylogenetic tree, REGEN infers evolutionary events, including gene creation and deletion and replicon fission and fusion. The reconstruction can be performed by either a maximum parsimony or a maximum likelihood method. Gene content reconstruction is based on the concept of neighboring gene pairs. REGEN was designed to be used with any set of genomes that are sufficiently related, which will usually be the case for bacteria within the same taxonomic order. We evaluated REGEN using simulated genomes and genomes in the Rhizobiales order.

  13. Method for position emission mammography image reconstruction

    Science.gov (United States)

    Smith, Mark Frederick

    2004-10-12

    An image reconstruction method comprising accepting coincidence datat from either a data file or in real time from a pair of detector heads, culling event data that is outside a desired energy range, optionally saving the desired data for each detector position or for each pair of detector pixels on the two detector heads, and then reconstructing the image either by backprojection image reconstruction or by iterative image reconstruction. In the backprojection image reconstruction mode, rays are traced between centers of lines of response (LOR's), counts are then either allocated by nearest pixel interpolation or allocated by an overlap method and then corrected for geometric effects and attenuation and the data file updated. If the iterative image reconstruction option is selected, one implementation is to compute a grid Siddon retracing, and to perform maximum likelihood expectation maiximization (MLEM) computed by either: a) tracing parallel rays between subpixels on opposite detector heads; or b) tracing rays between randomized endpoint locations on opposite detector heads.

  14. Multiscale reconstruction for MR fingerprinting.

    Science.gov (United States)

    Pierre, Eric Y; Ma, Dan; Chen, Yong; Badve, Chaitra; Griswold, Mark A

    2016-06-01

    To reduce the acquisition time needed to obtain reliable parametric maps with Magnetic Resonance Fingerprinting. An iterative-denoising algorithm is initialized by reconstructing the MRF image series at low image resolution. For subsequent iterations, the method enforces pixel-wise fidelity to the best-matching dictionary template then enforces fidelity to the acquired data at slightly higher spatial resolution. After convergence, parametric maps with desirable spatial resolution are obtained through template matching of the final image series. The proposed method was evaluated on phantom and in vivo data using the highly undersampled, variable-density spiral trajectory and compared with the original MRF method. The benefits of additional sparsity constraints were also evaluated. When available, gold standard parameter maps were used to quantify the performance of each method. The proposed approach allowed convergence to accurate parametric maps with as few as 300 time points of acquisition, as compared to 1000 in the original MRF work. Simultaneous quantification of T1, T2, proton density (PD), and B0 field variations in the brain was achieved in vivo for a 256 × 256 matrix for a total acquisition time of 10.2 s, representing a three-fold reduction in acquisition time. The proposed iterative multiscale reconstruction reliably increases MRF acquisition speed and accuracy. Magn Reson Med 75:2481-2492, 2016. © 2015 Wiley Periodicals, Inc. © 2015 Wiley Periodicals, Inc.

  15. Stereo reconstruction from multiperspective panoramas.

    Science.gov (United States)

    Li, Yin; Shum, Heung-Yeung; Tang, Chi-Keung; Szeliski, Richard

    2004-01-01

    A new approach to computing a panoramic (360 degrees) depth map is presented in this paper. Our approach uses a large collection of images taken by a camera whose motion has been constrained to planar concentric circles. We resample regular perspective images to produce a set of multiperspective panoramas and then compute depth maps directly from these resampled panoramas. Our panoramas sample uniformly in three dimensions: rotation angle, inverse radial distance, and vertical elevation. The use of multiperspective panoramas eliminates the limited overlap present in the original input images and, thus, problems as in conventional multibaseline stereo can be avoided. Our approach differs from stereo matching of single-perspective panoramic images taken from different locations, where the epipolar constraints are sine curves. For our multiperspective panoramas, the epipolar geometry, to the first order approximation, consists of horizontal lines. Therefore, any traditional stereo algorithm can be applied to multiperspective panoramas with little modification. In this paper, we describe two reconstruction algorithms. The first is a cylinder sweep algorithm that uses a small number of resampled multiperspective panoramas to obtain dense 3D reconstruction. The second algorithm, in contrast, uses a large number of multiperspective panoramas and takes advantage of the approximate horizontal epipolar geometry inherent in multiperspective panoramas. It comprises a novel and efficient 1D multibaseline matching technique, followed by tensor voting to extract the depth surface. Experiments show that our algorithms are capable of producing comparable high quality depth maps which can be used for applications such as view interpolation.

  16. Voting based object boundary reconstruction

    Science.gov (United States)

    Tian, Qi; Zhang, Like; Ma, Jingsheng

    2005-07-01

    A voting-based object boundary reconstruction approach is proposed in this paper. Morphological technique was adopted in many applications for video object extraction to reconstruct the missing pixels. However, when the missing areas become large, the morphological processing cannot bring us good results. Recently, Tensor voting has attracted people"s attention, and it can be used for boundary estimation on curves or irregular trajectories. However, the complexity of saliency tensor creation limits its applications in real-time systems. An alternative approach based on tensor voting is introduced in this paper. Rather than creating saliency tensors, we use a "2-pass" method for orientation estimation. For the first pass, Sobel d*etector is applied on a coarse boundary image to get the gradient map. In the second pass, each pixel puts decreasing weights based on its gradient information, and the direction with maximum weights sum is selected as the correct orientation of the pixel. After the orientation map is obtained, pixels begin linking edges or intersections along their direction. The approach is applied to various video surveillance clips under different conditions, and the experimental results demonstrate significant improvement on the final extracted objects accuracy.

  17. Reconstruction of abstract quantum theory

    International Nuclear Information System (INIS)

    Drieschner, M.; Goernitz, T.; von Weizsaecker, C.F.

    1988-01-01

    Understanding quantum theory as a general theory of prediction, we reconstruct abstract quantum theory. Abstract means the general frame of quantum theory, without reference to a three-dimensional position space, to concepts like particle or field, or to special laws of dynamics. Reconstruction is the attempt to do this by formulating simple and plausible postulates on prediction in order to derive the basic concepts of quantum theory from them. Thereby no law of classical physics is presupposed which would then have to be quantized. We briefly discuss the relationship of theory and interpretation in physics and the fundamental role of time as a basic concept for physics. Then a number of assertions are given, formulated as succinctly as possible in order to make them easily quotable and comparable. The assertations are arranged in four groups: heuristic principles, verbal definitions of some terms, three basic postulates, and consequences. The three postulates of separable alternatives, indeterminism, and kinematics are the central points of this work. These brief assertions are commented upon, and their relationship with the interpretation of quantum theory is discussed. Also given are an outlook on the further development into concrete quantum theory and some philosophical reflections

  18. Stochastic Optical Reconstruction Microscopy (STORM).

    Science.gov (United States)

    Xu, Jianquan; Ma, Hongqiang; Liu, Yang

    2017-07-05

    Super-resolution (SR) fluorescence microscopy, a class of optical microscopy techniques at a spatial resolution below the diffraction limit, has revolutionized the way we study biology, as recognized by the Nobel Prize in Chemistry in 2014. Stochastic optical reconstruction microscopy (STORM), a widely used SR technique, is based on the principle of single molecule localization. STORM routinely achieves a spatial resolution of 20 to 30 nm, a ten-fold improvement compared to conventional optical microscopy. Among all SR techniques, STORM offers a high spatial resolution with simple optical instrumentation and standard organic fluorescent dyes, but it is also prone to image artifacts and degraded image resolution due to improper sample preparation or imaging conditions. It requires careful optimization of all three aspects-sample preparation, image acquisition, and image reconstruction-to ensure a high-quality STORM image, which will be extensively discussed in this unit. © 2017 by John Wiley & Sons, Inc. Copyright © 2017 John Wiley & Sons, Inc.

  19. Primary vertex reconstruction with the ATLAS detector

    International Nuclear Information System (INIS)

    Meloni, F.

    2016-01-01

    Efficient and precise reconstruction of the primary vertex in a LHC collision is essential for determining the full kinematic properties of a hard-scatter event and of soft interactions as a measure of the amount of pile-up. The reconstruction of primary vertices in the busy, high pile-up environment of Run-2 of the LHC is a challenging task. The algorithms developed by the ATLAS experiments to reconstruct multiple vertices with small spatial separation are presented.

  20. Outcome of different facial nerve reconstruction techniques

    OpenAIRE

    Mohamed, Aboshanif; Omi, Eigo; Honda, Kohei; Suzuki, Shinsuke; Ishikawa, Kazuo

    2016-01-01

    Abstract Introduction: There is no technique of facial nerve reconstruction that guarantees facial function recovery up to grade III. Objective: To evaluate the efficacy and safety of different facial nerve reconstruction techniques. Methods: Facial nerve reconstruction was performed in 22 patients (facial nerve interpositional graft in 11 patients and hypoglossal-facial nerve transfer in another 11 patients). All patients had facial function House-Brackmann (HB) grade VI, either caused by...

  1. Considerations on Xi- reconstruction in LHCb

    CERN Document Server

    Brochu, F.M.

    2016-01-01

    This paper describes an alternative method of charged hyperon reconstruction applicable to the LHCb experiment. It extends the seminal work of the FOCUS collaboration to the specific detector layout of LHCb and addresses the reconstruction ambiguities reported in their earlier work, leading to improvements in the reconstruction efficiency for the specific cases of Xi- and Omega- baryon decays to a charged meson and a Lambda baryon.

  2. The Theory of Variances in Equilibrium Reconstruction

    International Nuclear Information System (INIS)

    Zakharov, Leonid E.; Lewandowski, Jerome; Foley, Elizabeth L.; Levinton, Fred M.; Yuh, Howard Y.; Drozdov, Vladimir; McDonald, Darren

    2008-01-01

    The theory of variances of equilibrium reconstruction is presented. It complements existing practices with information regarding what kind of plasma profiles can be reconstructed, how accurately, and what remains beyond the abilities of diagnostic systems. The σ-curves, introduced by the present theory, give a quantitative assessment of quality of effectiveness of diagnostic systems in constraining equilibrium reconstructions. The theory also suggests a method for aligning the accuracy of measurements of different physical nature

  3. Prosthetic breast reconstruction: indications and update

    Science.gov (United States)

    Quinn, Tam T.; Miller, George S.; Rostek, Marie; Cabalag, Miguel S.; Rozen, Warren M.

    2016-01-01

    Background Despite 82% of patients reporting psychosocial improvement following breast reconstruction, only 33% patients choose to undergo surgery. Implant reconstruction outnumbers autologous reconstruction in many centres. Methods A systematic review of the literature was undertaken. Inclusion required: (I) Meta-analyses or review articles; (II) adult patients aged 18 years or over undergoing alloplastic breast reconstruction; (III) studies including outcome measures; (IV) case series with more than 10 patients; (V) English language; and (VI) publication after 1st January, 2000. Results After full text review, analysis and data extraction was conducted for a total of 63 articles. Definitive reconstruction with an implant can be immediate or delayed. Older patients have similar or even lower complication rates to younger patients. Complications include capsular contracture, hematoma and infection. Obesity, smoking, large breasts, diabetes and higher grade tumors are associated with increased risk of wound problems and reconstructive failure. Silicone implant patients have higher capsular contracture rates but have higher physical and psychosocial function. There were no associations made between silicone implants and cancer or systemic disease. There were no differences in outcomes or complications between round and shaped implants. Textured implants have a lower risk of capsular contracture than smooth implants. Smooth implants are more likely to be displaced as well as having higher rates of infection. Immediate breast reconstruction (IBR) gives the best aesthetic outcome if radiotherapy is not required but has a higher rate of capsular contracture and implant failure. Delayed-immediate reconstruction patients can achieve similar aesthetic results to IBR whilst preserving the breast skin if radiotherapy is required. Delayed breast reconstruction (DBR) patients have fewer complications than IBR patients. Conclusions Implant reconstruction is a safe and popular

  4. Algorithms for reconstructing images for industrial applications

    International Nuclear Information System (INIS)

    Lopes, R.T.; Crispim, V.R.

    1986-01-01

    Several algorithms for reconstructing objects from their projections are being studied in our Laboratory, for industrial applications. Such algorithms are useful locating the position and shape of different composition of materials in the object. A Comparative study of two algorithms is made. The two investigated algorithsm are: The MART (Multiplicative - Algebraic Reconstruction Technique) and the Convolution Method. The comparison are carried out from the point view of the quality of the image reconstructed, number of views and cost. (Author) [pt

  5. Reconstructions of the sulfur-passivated InSb (100) surface

    Energy Technology Data Exchange (ETDEWEB)

    Ciochoń, Piotr, E-mail: piotr.ciochon@doctoral.uj.edu.pl; Olszowska, Natalia; Wróbel, Sonia; Kołodziej, Jacek

    2017-04-01

    Highlights: • Two new surface reconstructions of a S-passivated InSb (001) surface are reported. • The reconstructions are obtained through partial loss of surface sulfur. • They are characterized by the thickness of ∼4 Å and good crystallographic ordering. • The reconstructions provide adequate electronic passivation of the surface. - Abstract: We have studied the properties of the InSb (100) surface passivated with sulfur dimers emitted by the solid-state electrochemical cell in ultra-high vacuum. Annealing the passivated surface in the temperature equal to T = 326 °C led to the formation of the c(4 × 8) surface reconstruction, while increasing the temperature to T = 348 °C resulted in the transition to c(4 × 12) reconstruction. To the best of our knowledge these reconstructions have not been reported to date and are characterized by the exceptionally good crystallographic order. XPS studies revealed that there are at least 4 different chemical species of sulfur present on the surface and the estimated thickness of the sulfur layers is equal to around 4 Å. The surface reconstructions are characterized by the lowered intensity of the surface electronic states and resonances near the Fermi level, compared to the clean InSb surface, making them potentially very useful for the fabrication of InSb-based electronic and optoelectronic devices.

  6. Reconstruction of convex bodies from surface tensors

    DEFF Research Database (Denmark)

    Kousholt, Astrid; Kiderlen, Markus

    We present two algorithms for reconstruction of the shape of convex bodies in the two-dimensional Euclidean space. The first reconstruction algorithm requires knowledge of the exact surface tensors of a convex body up to rank s for some natural number s. The second algorithm uses harmonic intrinsic...... volumes which are certain values of the surface tensors and allows for noisy measurements. From a generalized version of Wirtinger's inequality, we derive stability results that are utilized to ensure consistency of both reconstruction procedures. Consistency of the reconstruction procedure based...

  7. Boomerang flap reconstruction for the breast.

    Science.gov (United States)

    Baumholtz, Michael A; Al-Shunnar, Buthainah M; Dabb, Richard W

    2002-07-01

    The boomerang-shaped latissimus dorsi musculocutaneous flap for breast reconstruction offers a stable platform for breast reconstruction. It allows for maximal aesthetic results with minimal complications. The authors describe a skin paddle to obtain a larger volume than either the traditional elliptical skin paddle or the extended latissimus flap. There are three specific advantages to the boomerang design: large volume, conical shape (often lacking in the traditional skin paddle), and an acceptable donor scar. Thirty-eight flaps were performed. No reconstruction interfered with patient's ongoing oncological regimen. The most common complication was seroma, which is consistent with other latissimus reconstructions.

  8. Jini service to reconstruct tomographic data

    Science.gov (United States)

    Knoll, Peter; Mirzaei, S.; Koriska, K.; Koehn, H.

    2002-06-01

    A number of imaging systems rely on the reconstruction of a 3- dimensional model from its projections through the process of computed tomography (CT). In medical imaging, for example magnetic resonance imaging (MRI), positron emission tomography (PET), and Single Computer Tomography (SPECT) acquire two-dimensional projections of a three dimensional projections of a three dimensional object. In order to calculate the 3-dimensional representation of the object, i.e. its voxel distribution, several reconstruction algorithms have been developed. Currently, mainly two reconstruct use: the filtered back projection(FBP) and iterative methods. Although the quality of iterative reconstructed SPECT slices is better than that of FBP slices, such iterative algorithms are rarely used for clinical routine studies because of their low availability and increased reconstruction time. We used Jini and a self-developed iterative reconstructions algorithm to design and implement a Jini reconstruction service. With this service, the physician selects the patient study from a database and a Jini client automatically discovers the registered Jini reconstruction services in the department's Intranet. After downloading the proxy object the this Jini service, the SPECT acquisition data are reconstructed. The resulting transaxial slices are visualized using a Jini slice viewer, which can be used for various imaging modalities.

  9. Optimizing Aesthetic Outcomes in Delayed Breast Reconstruction

    Directory of Open Access Journals (Sweden)

    Wojciech Dec, MD

    2017-08-01

    Conclusions:. Optimal aesthetic results can be achieved with: (1 restoration of breast skin envelope with tissue expansion when possible, (2 optimal positioning of a small skin paddle to be later incorporated entirely into a nipple areola reconstruction when adequate breast skin surface area is present, (3 limiting the reconstructed breast mound to 2 skin tones when large area skin resurfacing is required, (4 increasing breast volume by deepithelializing, not discarding, the inferior mastectomy flap skin, (5 eccentric division of abdominal flaps when an immediate and delayed bilateral breast reconstructions are performed simultaneously; and (6 performing second-stage breast reconstruction revisions and fat grafting.

  10. Reconstructing Nearly Simple Polytopes from their Graph

    OpenAIRE

    Doolittle, Joseph

    2017-01-01

    We present a partial description of which polytopes are reconstructible from their graphs. This is an extension of work by Blind and Mani (1987) and Kalai (1988), which showed that simple polytopes can be reconstructed from their graphs. In particular, we introduce a notion of $h$-nearly simple and prove that 1-nearly simple and 2-nearly simple polytopes are reconstructible from their graphs. We also give an example of a 3-nearly simple polytope which is not reconstructible from its graph. Fu...

  11. Breast Reconstruction After Solid Organ Transplant.

    Science.gov (United States)

    Koonce, Stephanie L; Giles, Brian; McLaughlin, Sarah A; Perdikis, Galen; Waldorf, James; Lemaine, Valerie; TerKonda, Sarvam

    2015-09-01

    Solid organ transplant patients frequently develop posttransplant malignancies including breast cancer. They may desire breast reconstruction after mastectomy, which could potentially be complicated by their transplant status, immunosuppressive regimen, and previous operations. We review our experience with patients who have undergone solid organ transplant and subsequent breast reconstruction after mastectomy After institutional review board approval, we queried our prospective breast reconstruction and solid organ transplant databases for corresponding patients. Inclusion criteria comprised breast reconstruction after solid organ transplant. A chart review was conducted of identified patients. Seventeen patients were identified: 1 pulmonary transplant, 4 cardiac transplants, 2 liver transplants, 1 pancreas transplant, 2 combined kidney/pancreas transplants, and 7 kidney transplants. Indications for mastectomy included posttransplant malignancy and prophylaxis. Median time from transplant to completion of reconstruction was 186 months (range, 11-336 months). Median age at transplant was 34.5 years (range, 21-65 years) with the median age of the patients at reconstructive surgery 51.5 years (range, 34-71 years). Median body mass index was 25.3 (range, 21.3-46.5). No significant complications were noted after reconstructive surgery. All patients were on full immunosuppression at time of reconstruction. Breast reconstruction is a viable option for transplant patients after mastectomy and should not be refused based on their transplant status. Close coordination with the transplant team and careful preoperative planning is essential for optimal outcomes.

  12. Sparse Image Reconstruction in Computed Tomography

    DEFF Research Database (Denmark)

    Jørgensen, Jakob Sauer

    In recent years, increased focus on the potentially harmful effects of x-ray computed tomography (CT) scans, such as radiation-induced cancer, has motivated research on new low-dose imaging techniques. Sparse image reconstruction methods, as studied for instance in the field of compressed sensing...... applications. This thesis takes a systematic approach toward establishing quantitative understanding of conditions for sparse reconstruction to work well in CT. A general framework for analyzing sparse reconstruction methods in CT is introduced and two sets of computational tools are proposed: 1...... contributions to a general set of computational characterization tools. Thus, the thesis contributions help advance sparse reconstruction methods toward routine use in...

  13. Tomographic image reconstruction using Artificial Neural Networks

    International Nuclear Information System (INIS)

    Paschalis, P.; Giokaris, N.D.; Karabarbounis, A.; Loudos, G.K.; Maintas, D.; Papanicolas, C.N.; Spanoudaki, V.; Tsoumpas, Ch.; Stiliaris, E.

    2004-01-01

    A new image reconstruction technique based on the usage of an Artificial Neural Network (ANN) is presented. The most crucial factor in designing such a reconstruction system is the network architecture and the number of the input projections needed to reconstruct the image. Although the training phase requires a large amount of input samples and a considerable CPU time, the trained network is characterized by simplicity and quick response. The performance of this ANN is tested using several image patterns. It is intended to be used together with a phantom rotating table and the γ-camera of IASA for SPECT image reconstruction

  14. Optoelectronic Computer Architecture Development for Image Reconstruction

    National Research Council Canada - National Science Library

    Forber, Richard

    1996-01-01

    .... Specifically, we collaborated with UCSD and ERIM on the development of an optically augmented electronic computer for high speed inverse transform calculations to enable real time image reconstruction...

  15. Image properties of list mode likelihood reconstruction for a rectangular positron emission mammography with DOI measurements

    International Nuclear Information System (INIS)

    Qi, Jinyi; Klein, Gregory J.; Huesman, Ronald H.

    2000-01-01

    A positron emission mammography scanner is under development at our Laboratory. The tomograph has a rectangular geometry consisting of four banks of detector modules. For each detector, the system can measure the depth of interaction information inside the crystal. The rectangular geometry leads to irregular radial and angular sampling and spatially variant sensitivity that are different from conventional PET systems. Therefore, it is of importance to study the image properties of the reconstructions. We adapted the theoretical analysis that we had developed for conventional PET systems to the list mode likelihood reconstruction for this tomograph. The local impulse response and covariance of the reconstruction can be easily computed using FFT. These theoretical results are also used with computer observer models to compute the signal-to-noise ratio for lesion detection. The analysis reveals the spatially variant resolution and noise properties of the list mode likelihood reconstruction. The theoretical predictions are in good agreement with Monte Carlo results

  16. Percolation Analysis of a Wiener Reconstruction of the IRAS 1.2 Jy Redshift Catalog

    Science.gov (United States)

    Yess, Capp; Shandarin, Sergei F.; Fisher, Karl B.

    1997-01-01

    We present percolation analyses of Wiener reconstructions of the IRAS 1.2 Jy redshift survey. There are 10 reconstructions of galaxy density fields in real space spanning the range β = 0.1-1.0, where β = Ω0.6/b, Ω is the present dimensionless density, and b is the bias factor. Our method uses the growth of the largest cluster statistic to characterize the topology of a density field, where Gaussian randomized versions of the reconstructions are used as standards for analysis. For the reconstruction volume of radius R ~ 100 h-1 Mpc, percolation analysis reveals a slight ``meatball'' topology for the real space, galaxy distribution of the IRAS survey.

  17. Regional compensation for statistical maximum likelihood reconstruction error of PET image pixels

    International Nuclear Information System (INIS)

    Forma, J; Ruotsalainen, U; Niemi, J A

    2013-01-01

    In positron emission tomography (PET), there is an increasing interest in studying not only the regional mean tracer concentration, but its variation arising from local differences in physiology, the tissue heterogeneity. However, in reconstructed images this physiological variation is shadowed by a large reconstruction error, which is caused by noisy data and the inversion of tomographic problem. We present a new procedure which can quantify the error variation in regional reconstructed values for given PET measurement, and reveal the remaining tissue heterogeneity. The error quantification is made by creating and reconstructing the noise realizations of virtual sinograms, which are statistically similar with the measured sinogram. Tests with physical phantom data show that the characterization of error variation and the true heterogeneity are possible, despite the existing model error when real measurement is considered. (paper)

  18. Tomographic reconstruction of neopterous carboniferous insect nymphs.

    Directory of Open Access Journals (Sweden)

    Russell Garwood

    Full Text Available Two new polyneopteran insect nymphs from the Montceau-les-Mines Lagerstätte of France are presented. Both are preserved in three dimensions, and are imaged with the aid of X-ray micro-tomography, allowing their morphology to be recovered in unprecedented detail. One-Anebos phrixos gen. et sp. nov.-is of uncertain affinities, and preserves portions of the antennae and eyes, coupled with a heavily spined habitus. The other is a roachoid with long antennae and chewing mouthparts very similar in form to the most generalized mandibulate mouthparts of extant orthopteroid insects. Computer reconstructions reveal limbs in both specimens, allowing identification of the segments and annulation in the tarsus, while poorly developed thoracic wing pads suggest both are young instars. This work describes the morphologically best-known Palaeozoic insect nymphs, allowing a better understanding of the juveniles' palaeobiology and palaeoecology. We also consider the validity of evidence from Palaeozoic juvenile insects in wing origin theories. The study of juvenile Palaeozoic insects is currently a neglected field, yet these fossils provide direct evidence on the evolution of insect development. It is hoped this study will stimulate a renewed interest in such work.

  19. [Evaluation of the impact of breast reconstruction in women in couple through a community-based research tool: The Seintinelles].

    Science.gov (United States)

    Lamore, Kristopher; Quintard, Bruno; Flahault, Cécile; Van Wersch, Anna; Untas, Aurélie

    2016-06-01

    This preliminary study explores the psychological and marital impact of breast reconstruction (or lack thereof) in women who had a mastectomy due to breast cancer. The study was carried out through an innovative and French community-based research tool on cancer: the Seintinelles. Sixty-nine partnered women treated for breast cancer participated, divided into 3 groups: 19 without breast reconstruction, 24 with immediate breast reconstruction and 26 with delayed breast reconstruction. They completed online questionnaires measuring both satisfaction and regret about the decision related to breast reconstruction, quality of life after breast surgery (EORTC-BRR), emotional state (POMS) and marital intimacy (PAIR). Recruitment through the Seintinelles had the advantage of being quick and national, but the profile of participants deviated from the mean population in the sense that our subjects were on average younger than women affected by breast cancer and had faced more breast cancer in their family. The results revealed that women are satisfied with their choice (little regret), have a similar emotional experience and good marital intimacy. However, women without breast reconstruction would less recommend their decision to others and were less satisfied with the aesthetic result, compared to women with breast reconstruction. These results highlight that psychological and marital impact seems comparable in women with and without reconstruction. Future studies are needed to better understand the role of the partner in the recourse of breast reconstruction. Copyright © 2016 Société Française du Cancer. Published by Elsevier Masson SAS. All rights reserved.

  20. Last Glacial Maximum Salinity Reconstruction

    Science.gov (United States)

    Homola, K.; Spivack, A. J.

    2016-12-01

    It has been previously demonstrated that salinity can be reconstructed from sediment porewater. The goal of our study is to reconstruct high precision salinity during the Last Glacial Maximum (LGM). Salinity is usually determined at high precision via conductivity, which requires a larger volume of water than can be extracted from a sediment core, or via chloride titration, which yields lower than ideal precision. It has been demonstrated for water column samples that high precision density measurements can be used to determine salinity at the precision of a conductivity measurement using the equation of state of seawater. However, water column seawater has a relatively constant composition, in contrast to porewater, where variations from standard seawater composition occur. These deviations, which affect the equation of state, must be corrected for through precise measurements of each ion's concentration and knowledge of apparent partial molar density in seawater. We have developed a density-based method for determining porewater salinity that requires only 5 mL of sample, achieving density precisions of 10-6 g/mL. We have applied this method to porewater samples extracted from long cores collected along a N-S transect across the western North Atlantic (R/V Knorr cruise KN223). Density was determined to a precision of 2.3x10-6 g/mL, which translates to salinity uncertainty of 0.002 gms/kg if the effect of differences in composition is well constrained. Concentrations of anions (Cl-, and SO4-2) and cations (Na+, Mg+, Ca+2, and K+) were measured. To correct salinities at the precision required to unravel LGM Meridional Overturning Circulation, our ion precisions must be better than 0.1% for SO4-/Cl- and Mg+/Na+, and 0.4% for Ca+/Na+, and K+/Na+. Alkalinity, pH and Dissolved Inorganic Carbon of the porewater were determined to precisions better than 4% when ratioed to Cl-, and used to calculate HCO3-, and CO3-2. Apparent partial molar densities in seawater were

  1. BREAST RECONSTRUCTIONS AFTER BREAST CANCER TREATING

    Directory of Open Access Journals (Sweden)

    Erik Vrabič

    2018-02-01

    Full Text Available Background. Breasts are an important symbol of physical beauty, feminity, mothering and sexual desire through the entire history of mankind. Lost of the whole or part of the breast is functional and aesthetic disturbance for woman. It is understandable, that the woman, who is concerned over breast loss, is as appropriate as another person´s concern over the loss of a limb or other body part. Before the 1960, breast reconstruction was considered as a dangerous procedure and it was almost prohibited. Considering the psychological importance of the breast in modern society, the possibility of breast reconstruction for the woman about to undergo a mastectomy is a comforting alternative. We can perform breast reconstruction with autologous tissue (autologous reconstruction, with breast implants and combination of both methods. For autologous reconstruction we can use local tissue (local flaps, or tissue from distant parts of the body (free vascular tissue transfer. Tissue expansion must be performed first, in many cases of breast reconstructions with breast implants. Conclusions. Possibility of breast reconstruction made a big progress last 3 decades. Today we are able to reconstruct almost every defect of the breast and the entire breast. Breast reconstruction rise the quality of life for breast cancer patients. Breast reconstruction is a team work of experts from many medicine specialites. In Slovenia we can offer breast reconstruction for breast cancer patients in Ljubljana, where plastic surgeons from Clinical Department for Plastic Surgery and Burns cooperate with oncologic surgeons. Ten years ago a similar cooperation between plastic surgeons and surgeons of the Centre for Breast Diseases was established in Maribor.

  2. Neural Network for Sparse Reconstruction

    Directory of Open Access Journals (Sweden)

    Qingfa Li

    2014-01-01

    Full Text Available We construct a neural network based on smoothing approximation techniques and projected gradient method to solve a kind of sparse reconstruction problems. Neural network can be implemented by circuits and can be seen as an important method for solving optimization problems, especially large scale problems. Smoothing approximation is an efficient technique for solving nonsmooth optimization problems. We combine these two techniques to overcome the difficulties of the choices of the step size in discrete algorithms and the item in the set-valued map of differential inclusion. In theory, the proposed network can converge to the optimal solution set of the given problem. Furthermore, some numerical experiments show the effectiveness of the proposed network in this paper.

  3. Hanford Environmental Dose Reconstruction Project

    International Nuclear Information System (INIS)

    McMakin, A.H.; Cannon, S.D.; Finch, S.M.

    1992-07-01

    The objective of the Hanford Environmental Dose Reconstruction (HEDR) Project is to estimate the radiation doses that individuals and populations could have received from nuclear operations at Hanford since 1944. The TSP consists of experts in environmental pathways, epidemiology, surface-water transport, ground-water transport, statistics, demography, agriculture, meteorology, nuclear engineering, radiation dosimetry, and cultural anthropology. Included are appointed technical members representing the states of Oregon, Washington, and Idaho, a representative of Native American tribes, and an individual representing the public. The project is divided into the following technical tasks. These tasks correspond to the path radionuclides followed from release to impact on humans (dose estimates): Source terms, environmental transport, environmental monitoring data, demography, food consumption, and agriculture, and environmental pathways and dose estimates. Progress is discussed

  4. Rational approximations for tomographic reconstructions

    International Nuclear Information System (INIS)

    Reynolds, Matthew; Beylkin, Gregory; Monzón, Lucas

    2013-01-01

    We use optimal rational approximations of projection data collected in x-ray tomography to improve image resolution. Under the assumption that the object of interest is described by functions with jump discontinuities, for each projection we construct its rational approximation with a small (near optimal) number of terms for a given accuracy threshold. This allows us to augment the measured data, i.e., double the number of available samples in each projection or, equivalently, extend (double) the domain of their Fourier transform. We also develop a new, fast, polar coordinate Fourier domain algorithm which uses our nonlinear approximation of projection data in a natural way. Using augmented projections of the Shepp–Logan phantom, we provide a comparison between the new algorithm and the standard filtered back-projection algorithm. We demonstrate that the reconstructed image has improved resolution without additional artifacts near sharp transitions in the image. (paper)

  5. Data acquisition, reconstruction, and display

    International Nuclear Information System (INIS)

    Huesman, R.H.

    1981-01-01

    A special emphasis of the Research Medicine program is the development of methods for acquiring and manipulating data from the Donner 280-crystal positron emission tomograph. This past year, development of a system capable of taking 1 million events per second while simultaneously correcting for unwanted accidental coincidence events was completed. The system permits the simultaneous acquisition of data for eight different time-slices of the cardiac cycle. A microprocessor responds to the patient's electrocardiogram (EKG) signal, routing data to the histogram memory corresponding to the phase of the cardiac cycle indicated by the signal. Additional work completed this year includes quantitation of the signal-to-noise ratio to be expected when imaging the human head. Effort is continuing on the more complicated problem of noise propagation in reconstructions of the human thorax

  6. Bayesian tomographic reconstruction of microsystems

    International Nuclear Information System (INIS)

    Salem, Sofia Fekih; Vabre, Alexandre; Mohammad-Djafari, Ali

    2007-01-01

    The microtomography by X ray transmission plays an increasingly dominating role in the study and the understanding of microsystems. Within this framework, an experimental setup of high resolution X ray microtomography was developed at CEA-List to quantify the physical parameters related to the fluids flow in microsystems. Several difficulties rise from the nature of experimental data collected on this setup: enhanced error measurements due to various physical phenomena occurring during the image formation (diffusion, beam hardening), and specificities of the setup (limited angle, partial view of the object, weak contrast).To reconstruct the object we must solve an inverse problem. This inverse problem is known to be ill-posed. It therefore needs to be regularized by introducing prior information. The main prior information we account for is that the object is composed of a finite known number of different materials distributed in compact regions. This a priori information is introduced via a Gauss-Markov field for the contrast distributions with a hidden Potts-Markov field for the class materials in the Bayesian estimation framework. The computations are done by using an appropriate Markov Chain Monte Carlo (MCMC) technique.In this paper, we present first the basic steps of the proposed algorithms. Then we focus on one of the main steps in any iterative reconstruction method which is the computation of forward and adjoint operators (projection and backprojection). A fast implementation of these two operators is crucial for the real application of the method. We give some details on the fast computation of these steps and show some preliminary results of simulations

  7. Modern approach to facial skin defects reconstruction

    Directory of Open Access Journals (Sweden)

    Mateusz Kister

    2017-10-01

    Full Text Available Reconstruction of a facial defect is usually a challenging endeavor. The article aims to describe different types of flaps that might be used to restore such deformities- including their characteristics, indications and guidelines that should be followed in the reconstructive procedures.

  8. Seismic interferometry : Reconstructing the earth's reflection response

    NARCIS (Netherlands)

    Draganov, D.S.; Wapenaar, C.P.A.; Thorbecke, J.W.

    2006-01-01

    In 1968, Jon Claerbout showed that the reflection response of a 1D acoustic medium can be reconstructed by autocorrelating the transmission response. Since then, several authors have derived relationships for reconstructing Green's functions at the surface, using crosscorrelations of (noise)

  9. Oral cavity reconstruction with the masseter flap

    NARCIS (Netherlands)

    Mahieu, R.; Russo, S.; Gualtieri, T.; Colletti, G.; Deganello, A.

    The purpose of this report is to highlight how an unusual, outdated, unpopular and overlooked reconstructive method such as the masseter flap can be a reliable, straightforward and effective solution for oral reconstruction in selected cases. We report the transposition of the masseter crossover

  10. RECONSTRUCTION OF THE SOUND CONDUCTING MECHANISM ...

    African Journals Online (AJOL)

    In this progress report on a new tympanoplastic procedure for reconstructing a disrupted sound conducting mechanism characterized by destruction of the handle of the malleus, it is shown that by reconstructing a tympanic membrane and a handle of the malleus from a patient's own tissue and by utilizing a prosthesis for ...

  11. Anatomic Double-bundle ACL Reconstruction

    NARCIS (Netherlands)

    Schreiber, Verena M.; van Eck, Carola F.; Fu, Freddie H.

    2010-01-01

    Rupture of the anterior cruciate ligament (ACL) is one of the most frequent forms of knee trauma. The traditional surgical treatment for ACL rupture is single-bundle reconstruction. However, during the past few years there has been a shift in interest toward double-bundle reconstruction to closely

  12. Advances in bioprinting technologies for craniofacial reconstruction

    NARCIS (Netherlands)

    Visscher, D.O.; Farré-Guasch, E.; Helder, M.N.; Gibbs, S.; Forouzanfar, T.; van Zuijlen, P.P.; Wolff, J.

    2016-01-01

    Recent developments in craniofacial reconstruction have shown important advances in both the materials and methods used. While autogenous tissue is still considered to be the gold standard for these reconstructions, the harvesting procedure remains tedious and in many cases causes significant donor

  13. Parallel Algorithm for Reconstruction of TAC Images

    International Nuclear Information System (INIS)

    Vidal Gimeno, V.

    2012-01-01

    The algebraic reconstruction methods are based on solving a system of linear equations. In a previous study, was used and showed as the PETSc library, was and is a scientific computing tool, which facilitates and enables the optimal use of a computer system in the image reconstruction process.

  14. Labral reconstruction: when to perform and how

    Directory of Open Access Journals (Sweden)

    Brian J White

    2015-07-01

    Full Text Available Over the past decade, the understanding of the anatomy and function of the hip joint has continuously evolved, and surgical treatment options for the hip have significantly progressed. Originally, surgical treatment of the hip primarily involved resection of damaged tissue. Procedures that maintain and preserve proper hip anatomy, such as labral repair and femoroacetabular impingement (FAI correction, have shown superior results, in terms of pain reduction, increased function, and ability to return to activities. Labral reconstruction is a treatment option that uses a graft to reconstruct the native labrum. The technique and outcomes of labral reconstruction have been described relatively recently, and labral reconstruction is a cutting edge procedure that has shown promising early outcomes. The aim of this article is to review the current literature on hip labral reconstruction. We will review the indications for labral reconstruction, surgical technique and graft options, and surgical outcomes that have been described to date. Labral reconstruction provides an alternative treatment option for challenging intra-articular hip problems. Labral reconstruction restores the original anatomy of the hip and has the potential to preserve the longevity of the hip joint. This technique is an important tool in the orthopaedic surgeon’s arsenal for hip joint treatment and preservation.

  15. [Pelvic reconstructions after bone tumor resection].

    Science.gov (United States)

    Anract, Philippe; Biau, David; Babinet, Antoine; Tomeno, Bernard

    2014-02-01

    The three more frequent primitive malignant bone tumour which concerned the iliac bone are chondrosarcoma, following Ewing sarcoma and osteosarcoma. Wide resection remains the most important part of the treatment associated with chemotherapy for osteosarcoma and the Ewing sarcoma. Iliac wing resections and obdurate ring don't required reconstruction. However, acetabular resections and iliac wing resection with disruption of the pelvic ring required reconstruction to provide acceptable functional result. Acetabular reconstruction remains high technical demanding challenge. After isolated acetabular resection or associated to obdurate ring, our usual method of reconstruction is homolateral proximal femoral autograft and total hip prosthesis but it is possible to also used : saddle prosthesis, Mac Minn prosthesis with auto or allograft, modular prosthesis or custom made prosthesis, massive allograft with or without prosthesis and femoro-ilac arthrodesis. After resection of the iliac wing plus acetabulum, reconstruction can be performed by femoro-obturatrice and femora-sacral arthrodesis, homolateral proximal femoral autograft and prosthesis, femoral medialisation, massive allograft and massive allograft. Carcinological results are lesser than resection for distal limb tumor, local recurrence rate range 17 to 45%. Functional results after Iliac wing and obdurate ring are good. However, acetabular reconstruction provide uncertain functional results. The lesser results arrive after hemipelvic or acetabular and iliac wing resection-reconstruction, especially when gluteus muscles were also resected. The most favourable results arrive after isolated acetabular or acetabular plus obturateur ring resection-reconstruction.

  16. Botulinum toxin in preparation of oral cavity for microsurgical reconstruction.

    Science.gov (United States)

    Corradino, Bartolo; Di Lorenzo, Sara; Mossuto, Carmela; Costa, Renato Patrizio; Moschella, Francesco

    2010-01-01

    Infiltration of botulinum toxin in the major salivary glands allows a temporary reduction of salivation that begins 8 days afterwards and returns to normal within 2 months. The inhibition of salivary secretion, carried out before the oral cavity reconstructive surgery, could allow a reduction of the incidence of oro-cutaneous fistulas and local complications. Saliva stagnation is a risk factor for patients who have to undergo reconstructive microsurgery of the oral cavity, because of fistula formation and local complications in the oral cavity. The authors suggest infiltration of botulinum toxin in the major salivary glands to reduce salivation temporarily during the healing stage. During the preoperative stage, 20 patients with oral cavity carcinoma who were candidates for microsurgical reconstruction underwent sialoscintigraphy and a quantitative measurement of the salivary secretion. Injection of botulinum toxin was carried out in the salivary glands 4 days before surgery. The saliva quantitative measurement was repeated 3 and 8 days after infiltration, sialoscintigraphy after 15 days. In all cases, the saliva quantitative measurement revealed a reduction of 50% and 70% of the salivary secretion after 72 h and 8 days, respectively. A lower rate of local complications was observed.

  17. Tomographic reconstruction of OH* chemiluminescence in two interacting turbulent flames

    International Nuclear Information System (INIS)

    Worth, Nicholas A; Dawson, James R

    2013-01-01

    The tomographic reconstruction of OH* chemiluminescence was performed on two interacting turbulent premixed bluff-body stabilized flames under steady flow conditions and acoustic excitation. These measurements elucidate the complex three-dimensional (3D) vortex–flame interactions which have previously not been accessible. The experiment was performed using a single camera and intensifier, with multiple views acquired by repositioning the camera, permitting calculation of the mean and phase-averaged volumetric OH* distributions. The reconstructed flame structure and phase-averaged dynamics are compared with OH planar laser-induced fluorescence and flame surface density measurements for the first time. The volumetric data revealed that the large-scale vortex–flame structures formed along the shear layers of each flame collide when the two flames meet, resulting in complex 3D flame structures in between the two flames. With a fairly simple experimental setup, it is shown that the tomographic reconstruction of OH* chemiluminescence in forced flames is a powerful tool that can yield important physical insights into large-scale 3D flame dynamics that are important in combustion instability. (paper)

  18. Track reconstruction in CMS high luminosity environment

    CERN Document Server

    AUTHOR|(CDS)2067159

    2016-01-01

    The CMS tracker is the largest silicon detector ever built, covering 200 square meters and providing an average of 14 high-precision measurements per track. Tracking is essential for the reconstruction of objects like jets, muons, electrons and tau leptons starting from the raw data from the silicon pixel and strip detectors. Track reconstruction is widely used also at trigger level as it improves objects tagging and resolution.The CMS tracking code is organized in several levels, known as iterative steps, each optimized to reconstruct a class of particle trajectories, as the ones of particles originating from the primary vertex or displaced tracks from particles resulting from secondary vertices. Each iterative step consists of seeding, pattern recognition and fitting by a kalman filter, and a final filtering and cleaning. Each subsequent step works on hits not yet associated to a reconstructed particle trajectory.The CMS tracking code is continuously evolving to make the reconstruction computing load compat...

  19. Track reconstruction in CMS high luminosity environment

    CERN Document Server

    Goetzmann, Christophe

    2014-01-01

    The CMS tracker is the largest silicon detector ever built, covering 200 square meters and providing an average of 14 high-precision measurements per track. Tracking is essential for the reconstruction of objects like jets, muons, electrons and tau leptons starting from the raw data from the silicon pixel and strip detectors. Track reconstruction is widely used also at trigger level as it improves objects tagging and resolution.The CMS tracking code is organized in several levels, known as iterative steps, each optimized to reconstruct a class of particle trajectories, as the ones of particles originating from the primary vertex or displaced tracks from particles resulting from secondary vertices. Each iterative step consists of seeding, pattern recognition and fitting by a kalman filter, and a final filtering and cleaning. Each subsequent step works on hits not yet associated to a reconstructed particle trajectory.The CMS tracking code is continuously evolving to make the reconstruction computing load compat...

  20. Reconstruction of convex bodies from surface tensors

    DEFF Research Database (Denmark)

    Kousholt, Astrid; Kiderlen, Markus

    2016-01-01

    We present two algorithms for reconstruction of the shape of convex bodies in the two-dimensional Euclidean space. The first reconstruction algorithm requires knowledge of the exact surface tensors of a convex body up to rank s for some natural number s. When only measurements subject to noise...... of surface tensors are available for reconstruction, we recommend to use certain values of the surface tensors, namely harmonic intrinsic volumes instead of the surface tensors evaluated at the standard basis. The second algorithm we present is based on harmonic intrinsic volumes and allows for noisy...... measurements. From a generalized version of Wirtinger's inequality, we derive stability results that are utilized to ensure consistency of both reconstruction procedures. Consistency of the reconstruction procedure based on measurements subject to noise is established under certain assumptions on the noise...

  1. Reconstructing baryon oscillations: A Lagrangian theory perspective

    International Nuclear Information System (INIS)

    Padmanabhan, Nikhil; White, Martin; Cohn, J. D.

    2009-01-01

    Recently Eisenstein and collaborators introduced a method to 'reconstruct' the linear power spectrum from a nonlinearly evolved galaxy distribution in order to improve precision in measurements of baryon acoustic oscillations. We reformulate this method within the Lagrangian picture of structure formation, to better understand what such a method does, and what the resulting power spectra are. We show that reconstruction does not reproduce the linear density field, at second order. We however show that it does reduce the damping of the oscillations due to nonlinear structure formation, explaining the improvements seen in simulations. Our results suggest that the reconstructed power spectrum is potentially better modeled as the sum of three different power spectra, each dominating over different wavelength ranges and with different nonlinear damping terms. Finally, we also show that reconstruction reduces the mode-coupling term in the power spectrum, explaining why miscalibrations of the acoustic scale are reduced when one considers the reconstructed power spectrum.

  2. Additive manufacturing technology in reconstructive surgery.

    Science.gov (United States)

    Fuller, Scott C; Moore, Michael G

    2016-10-01

    Technological advances have been part and parcel of modern reconstructive surgery, in that practitioners of this discipline are continually looking for innovative ways to perfect their craft and improve patient outcomes. We are currently in a technological climate wherein advances in computers, imaging, and science have coalesced with resulting innovative breakthroughs that are not merely limited to improved outcomes and enhanced patient care, but may provide novel approaches to training the next generation of reconstructive surgeons. New developments in software and modeling platforms, imaging modalities, tissue engineering, additive manufacturing, and customization of implants are poised to revolutionize the field of reconstructive surgery. The interface between technological advances and reconstructive surgery continues to expand. Additive manufacturing techniques continue to evolve in an effort to improve patient outcomes, decrease operative time, and serve as instructional tools for the training of reconstructive surgeons.

  3. Innovations in diabetic foot reconstruction using supermicrosurgery.

    Science.gov (United States)

    Suh, Hyun Suk; Oh, Tae Suk; Hong, Joon Pio

    2016-01-01

    The treatment of diabetic foot ulceration is complex with multiple factors involved, and it may often lead to limb amputation. Hence, a multidisciplinary approach is warranted to cover the spectrum of treatment for diabetic foot, but in complex wounds, surgical treatment is inevitable. Surgery may involve the decision to preserve the limb by reconstruction or to amputate it. Reconstruction involves preserving the limb with secure coverage. Local flaps usually are able to provide sufficient coverage for small or moderate sized wound, but for larger wounds, soft tissue coverage involves flaps that are distantly located from the wound. Reconstruction of distant flap usually involves microsurgery, and now, further innovative methods such as supermicrosurgery have further given complex wounds a better chance to be reconstructed and limbs salvaged. This article reviews the microsurgery involved in reconstruction and introduces the new method of supermicrosurgery. Copyright © 2016 John Wiley & Sons, Ltd.

  4. Reconstruction of the anterior cruciate ligament of the knee

    Directory of Open Access Journals (Sweden)

    Nikolić Dragan

    2006-01-01

    Full Text Available Background/Aim. Numerous papers on reconstruction of the anterior cruciate ligament of the knee (ACL contribute to the significance of this method. The aim of this study was to analyze the outcome of the use of this surgical treatment method regardless the type of surgical intervention, graft, and the choice of the material for fixing. Methods. The study included 324 patients treated within the period from April 1997 to April 2004. Arthroscopically assisted ACL reconstruction was typically performed using the central one-third of the patellar ligament, as a graft, with bone blocks. Fixing was performed using screws (spongy or interferential, Mitek type. In the cases who required revision of the surgery, we used a graft m. semitendinosus and m. gracilise (STG or a graft of the patellar ligament (B-Pt-B. Fixation in these cases was performed using absorptive wedges according to the Rigidfix technique or metallic implants. Results. The analysis included the results of the reconstruction of the anterior cruciate ligament of the knee (B-Pt-B or STG graft in 139 of the knees. Chronic injuries were revealed in 132 (94.9% of the knees. According to the anamnesis and clinical findings, the feeling of instability prevailed in 132 (94.9% of the knees, pain in 72 (51.7%, effluents in 24 (17.2%, and blockages in 13 (9.3%. Early and late postoperative complications were noticeable in 3.5% each. Hypotrophy of the upper knee musculature up to 2 cm was present in 53.9% of the operated knees, while minor contractions in 13.6% of them. The final result of the reconstruction graded begusing the Lysholm Scale was 85.2, simultaneous reconstructions of other ligaments 75.3, and revision surgery 68.0. First-grade degenerative postoperative changes according to the K/L Scale were found in 55.0% of the surgically treated knees, while the worst, four-grade one in 2.5%. Conclusion. On the basis of these findings, we can conclude that this method is the method of choice in

  5. [Localized purpura revealing vascular prosthetic graft infection].

    Science.gov (United States)

    Boureau, A S; Lescalie, F; Cassagnau, E; Clairand, R; Connault, J

    2013-07-01

    Prosthetic graft infection after vascular reconstruction is a rare but serious complication. We report a case of infection occurring late after implantation of an iliofemoral prosthetic vascular graft. The Staphylococcus aureus infection was revealed by vascular purpura localized on the right leg 7 years after implantation of a vascular prosthesis. This case illustrates an uncommonly late clinical manifestation presenting as an acute infection 7 years after the primary operation. In this situation, the presentation differs from early infection, which generally occurs within the first four postoperative months. Diagnosis and treatment remain a difficult challenge because prosthetic graft infection is a potentially life-threatening complication. Morbidity and mortality rates are high. Here we detail specific aspects of the clinical and radiological presentation. Copyright © 2013 Elsevier Masson SAS. All rights reserved.

  6. Revealing the programming process

    DEFF Research Database (Denmark)

    Bennedsen, Jens; Caspersen, Michael Edelgaard

    2005-01-01

    One of the most important goals of an introductory programming course is that the students learn a systematic approach to the development of computer programs. Revealing the programming process is an important part of this; however, textbooks do not address the issue -- probably because...... the textbook medium is static and therefore ill-suited to expose the process of programming. We have found that process recordings in the form of captured narrated programming sessions are a simple, cheap, and efficient way of providing the revelation.We identify seven different elements of the programming...

  7. TypeScript revealed

    CERN Document Server

    Maharry, Dan

    2013-01-01

    TypeScript Revealed is a quick 100-page guide to Anders Hejlsberg's new take on JavaScript. With this brief, fast-paced introduction to TypeScript, .NET, Web and Windows 8 application developers who are already familiar with JavaScript will easily get up to speed with TypeScript and decide whether or not to start incorporating it into their own development. TypeScript is 'JavaScript for Application-scale development'; a superset of JavaScript that brings to it an additional object-oriented-like syntax familiar to .NET programmers that compiles down into simple, clean JavaScript that any browse

  8. The reconstruction of the training reactor of the Budapest Technical University

    International Nuclear Information System (INIS)

    Viragh, E.

    1981-01-01

    The reconstruction of the training reactor between 1978 and 1981 did not hinder the education and training activities of the University. Dosimetric measurements during the test run revealed no additional hazard from the elevation of power from 10 to 100 kW. (author)

  9. Surprise, Memory, and Retrospective Judgment Making: Testing Cognitive Reconstruction Theories of the Hindsight Bias Effect

    Science.gov (United States)

    Ash, Ivan K.

    2009-01-01

    Hindsight bias has been shown to be a pervasive and potentially harmful decision-making bias. A review of 4 competing cognitive reconstruction theories of hindsight bias revealed conflicting predictions about the role and effect of expectation or surprise in retrospective judgment formation. Two experiments tested these predictions examining the…

  10. Synsedimentary ash rains and paleoenvironmental conditions during the deposition of the Chachil Formation (Pliensbachian) at its type locality, Neuquén Basin, Argentina

    Science.gov (United States)

    Armella, Claudia; Leanza, Héctor A.; Corfu, Fernando

    2016-11-01

    A detailed sedimentological analysis of the so called "Chachil Limestones" at its type locality around the Mirador del Chachil area, southwestern Neuquén province, Argentina, is presented in this paper for the first time. It is based on a macro/microfacial analysis and their environmental interpretation by means on texture, fabric, bioclasts, intrabasinal and extrabasinal grain amounts, sedimentary structures, bioturbations and hydro-dynamism. Because of the recognition of different facies associations, but no pure limestones, it is more suitable to refer these sediments as the Chachil Formation. The depositional environment of this unit is interpreted to correspond to an internal platform dominated by tides, with carbonate sedimentation disturbed by repeated explosive volcanic episodes, which reduced the sedimentation space, causing retrogradation of the sedimentary system and coastal onlap. In addition, a new recalibration of the U-Pb zircon dating used for the geochronological analysis reveals a small change with regard to previous information that has been used to recalculate the data, is presented in this paper.

  11. Reconstructing paleoceanographic conditions in the westernmost Mediterranean during the last 4.000 yr: tracking rapid climate variability

    Science.gov (United States)

    Nieto-Moreno, V.; Martínez-Ruiz, F.; Jiménez-Espejo, F. J.; Gallego-Torres, D.; Rodrigo-Gámiz, M.; Sakamoto, T.; Böttcher, M.; García-Orellana, J.; Ortega-Huertas, M.

    2009-04-01

    The westernmost Mediterranean (Alboran Sea basin) is a key location for paleoceanographic and paleoclimatic reconstructions since high sedimentation rates provide ultra high-resolution records at centennial and millennial scales. Here, we present a paleoenvironmental reconstruction for the last 4000 yr, which is based on a multi-proxy approach that includes major and trace element-content fluctuations and mineral composition of marine sediments. The investigated materials correspond to several gravity and box cores recovered in the Alboran Sea basin during different oceanographic cruises (TTR-14 and TTR-17), which have been sampled at very high resolution. Comparative analysis of these cores allows establishing climate oscillations at centennial to millennial scales. Although relatively more attention have been devoted to major climate changes during the last glacial cycle, such as the Last Glacial Maximun, deglaciation and abrupt cooling events (Heinrich and Younger Dryas), the late Holocene has also been punctuated by significant rapid climate variability including polar cooling, aridity and changes in the intensity of the atmospheric circulation. These climate oscillations coincide with significant fluctuations in chemical and mineral composition of marine sediments. Thus, bulk and clay mineralogy, REE composition and Rb/Al, Zr/Al, La/Lu ratios provide information on the sedimentary regime (eolian-fluvial input and source areas), Ba-based proxies on fluctuations in marine productivity and redox sensitive elements on oxygen conditions at time of deposition. A decrease in fluvial-derived elements/minerals (e.g., Rb, detrital mica) takes places during the so-called Late Bronze Age-Iron Age, Dark Age, and Little Ice Age Period. Meanwhile an increase is evidenced during the Medieval Warm Period and the Roman Humid Period. This last trend runs parallel to a decline of element/minerals of typical eolian source (Zr, kaolinite) with the exception of the Roman Humid

  12. Maxillary reconstruction: Current concepts and controversies

    Directory of Open Access Journals (Sweden)

    Subramania Iyer

    2014-01-01

    Full Text Available Maxillary reconstruction is still an evolving art when compared to the reconstruction of the mandible. The defects of maxilla apart from affecting the functions of the speech, swallowing and mastication also cause cosmetic disfigurement. Rehabilitation of the form and function in patients with maxillary defects is either by using an obturator prosthesis or by a surgical reconstruction. Literature is abundant with a variety of reconstructive methods. The classification systems are also varied, with no universal acceptance of any one of them. The oncologic safety of these procedures is still debated, and conclusive evidence in this regard has not emerged yet. Management of the orbit is also not yet addressed properly. Tissue engineering, that has been hyped to be one of the possible solutions for this vexing reconstructive problem, has not come out with reliable and reproducible results so far. This review article discusses the rationale and oncological safety of the reconstructing the maxillary defects, critically analyzes the classification systems, offers the different reconstructive methods and touches upon the controversies in this subject. The management of the retained and exenterated orbit associated with maxillectomy is reviewed. The surgical morbidity, complications and the recent advances in this field are also looked into. An algorithm, based on our experience, is presented.

  13. Maxillary reconstruction: Current concepts and controversies

    Science.gov (United States)

    Iyer, Subramania; Thankappan, Krishnakumar

    2014-01-01

    Maxillary reconstruction is still an evolving art when compared to the reconstruction of the mandible. The defects of maxilla apart from affecting the functions of the speech, swallowing and mastication also cause cosmetic disfigurement. Rehabilitation of the form and function in patients with maxillary defects is either by using an obturator prosthesis or by a surgical reconstruction. Literature is abundant with a variety of reconstructive methods. The classification systems are also varied, with no universal acceptance of any one of them. The oncologic safety of these procedures is still debated, and conclusive evidence in this regard has not emerged yet. Management of the orbit is also not yet addressed properly. Tissue engineering, that has been hyped to be one of the possible solutions for this vexing reconstructive problem, has not come out with reliable and reproducible results so far. This review article discusses the rationale and oncological safety of the reconstructing the maxillary defects, critically analyzes the classification systems, offers the different reconstructive methods and touches upon the controversies in this subject. The management of the retained and exenterated orbit associated with maxillectomy is reviewed. The surgical morbidity, complications and the recent advances in this field are also looked into. An algorithm, based on our experience, is presented. PMID:24987199

  14. Photoacoustic image reconstruction via deep learning

    Science.gov (United States)

    Antholzer, Stephan; Haltmeier, Markus; Nuster, Robert; Schwab, Johannes

    2018-02-01

    Applying standard algorithms to sparse data problems in photoacoustic tomography (PAT) yields low-quality images containing severe under-sampling artifacts. To some extent, these artifacts can be reduced by iterative image reconstruction algorithms which allow to include prior knowledge such as smoothness, total variation (TV) or sparsity constraints. These algorithms tend to be time consuming as the forward and adjoint problems have to be solved repeatedly. Further, iterative algorithms have additional drawbacks. For example, the reconstruction quality strongly depends on a-priori model assumptions about the objects to be recovered, which are often not strictly satisfied in practical applications. To overcome these issues, in this paper, we develop direct and efficient reconstruction algorithms based on deep learning. As opposed to iterative algorithms, we apply a convolutional neural network, whose parameters are trained before the reconstruction process based on a set of training data. For actual image reconstruction, a single evaluation of the trained network yields the desired result. Our presented numerical results (using two different network architectures) demonstrate that the proposed deep learning approach reconstructs images with a quality comparable to state of the art iterative reconstruction methods.

  15. Updates in Head and Neck Reconstruction.

    Science.gov (United States)

    Largo, Rene D; Garvey, Patrick B

    2018-02-01

    After reading this article, the participant should be able to: 1. Have a basic understanding of virtual planning, rapid prototype modeling, three-dimensional printing, and computer-assisted design and manufacture. 2. Understand the principles of combining virtual planning and vascular mapping. 3. Understand principles of flap choice and design in preoperative planning of free osteocutaneous flaps in mandible and midface reconstruction. 4. Discuss advantages and disadvantages of computer-assisted design and manufacture in reconstruction of advanced oncologic mandible and midface defects. Virtual planning and rapid prototype modeling are increasingly used in head and neck reconstruction with the aim of achieving superior surgical outcomes in functionally and aesthetically critical areas of the head and neck compared with conventional reconstruction. The reconstructive surgeon must be able to understand this rapidly-advancing technology, along with its advantages and disadvantages. There is no limit to the degree to which patient-specific data may be integrated into the virtual planning process. For example, vascular mapping can be incorporated into virtual planning of mandible or midface reconstruction. Representative mandible and midface cases are presented to illustrate the process of virtual planning. Although virtual planning has become helpful in head and neck reconstruction, its routine use may be limited by logistic challenges, increased acquisition costs, and limited flexibility for intraoperative modifications. Nevertheless, the authors believe that the superior functional and aesthetic results realized with virtual planning outweigh the limitations.

  16. Iterative reconstruction reduces abdominal CT dose

    International Nuclear Information System (INIS)

    Martinsen, Anne Catrine Trægde; Sæther, Hilde Kjernlie; Hol, Per Kristian; Olsen, Dag Rune; Skaane, Per

    2012-01-01

    Objective: In medical imaging, lowering radiation dose from computed tomography scanning, without reducing diagnostic performance is a desired achievement. Iterative image reconstruction may be one tool to achieve dose reduction. This study reports the diagnostic performance using a blending of 50% statistical iterative reconstruction (ASIR) and filtered back projection reconstruction (FBP) compared to standard FBP image reconstruction at different dose levels for liver phantom examinations. Methods: An anthropomorphic liver phantom was scanned at 250, 185, 155, 140, 120 and 100 mA s, on a 64-slice GE Lightspeed VCT scanner. All scans were reconstructed with ASIR and FBP. Four readers evaluated independently on a 5-point scale 21 images, each containing 32 test sectors. In total 672 areas were assessed. ROC analysis was used to evaluate the differences. Results: There was a difference in AUC between the 250 mA s FBP images and the 120 and 100 mA s FBP images. ASIR reconstruction gave a significantly higher diagnostic performance compared to standard reconstruction at 100 mA s. Conclusion: A blending of 50–90% ASIR and FBP may improve image quality of low dose CT examinations of the liver, and thus give a potential for reducing radiation dose.

  17. EIT image reconstruction with four dimensional regularization.

    Science.gov (United States)

    Dai, Tao; Soleimani, Manuchehr; Adler, Andy

    2008-09-01

    Electrical impedance tomography (EIT) reconstructs internal impedance images of the body from electrical measurements on body surface. The temporal resolution of EIT data can be very high, although the spatial resolution of the images is relatively low. Most EIT reconstruction algorithms calculate images from data frames independently, although data are actually highly correlated especially in high speed EIT systems. This paper proposes a 4-D EIT image reconstruction for functional EIT. The new approach is developed to directly use prior models of the temporal correlations among images and 3-D spatial correlations among image elements. A fast algorithm is also developed to reconstruct the regularized images. Image reconstruction is posed in terms of an augmented image and measurement vector which are concatenated from a specific number of previous and future frames. The reconstruction is then based on an augmented regularization matrix which reflects the a priori constraints on temporal and 3-D spatial correlations of image elements. A temporal factor reflecting the relative strength of the image correlation is objectively calculated from measurement data. Results show that image reconstruction models which account for inter-element correlations, in both space and time, show improved resolution and noise performance, in comparison to simpler image models.

  18. Optimization of PET image quality by means of 3D data acquisition and iterative image reconstruction

    International Nuclear Information System (INIS)

    Doll, J.; Zaers, J.; Trojan, H.; Bellemann, M.E.; Adam, L.E.; Haberkorn, U.; Brix, G.

    1998-01-01

    The experiments were performed at the latest-generation whole-body PET system ECAT EXACT HR + . For 2D data acquisition, a collimator of thin tungsten septa was positioned in the field-of-view. Prior to image reconstruction, the measured 3D data were sorted into 2D sinograms by using the Fourier rebinning (FORE) algorithm developed by M. Defrise. The standard filtered backprojection (FBP) method and an optimized ML/EM algorithm with overrelaxation for accelerated convergence were employed for image reconstruction. The spatial resolution of both methods as well as the convergence and noise properties of the ML/EM algorithm were studied in phantom measurements. Furthermore, patient data were acquired in the 2D mode as well as in the 3D mode and reconstructed with both techniques. At the same spatial resolution, the ML/EM-reconstructed images showed fewer and less prominent artefacts than the FBP-reconstructed images. The resulting improved detail conspicuously was achieved for the data acquired in the 2D mode as well as in the 3D mode. The best image quality was obtained by iterative 2D reconstruction of 3D data sets which were previously rebinned into 2D sinograms with help of the FORE algorithm. The phantom measurements revealed that 50 iteration steps with the otpimized ML/EM algorithm were sufficient to keep the relative quantitation error below 5%. (orig./MG) [de

  19. RECONSTRUCTION OF PRECIPITATION SERIES AND ANALYSIS OF CLIMATE CHANGE OVER PAST 500 YEARS IN NORTHERN CHINA

    Institute of Scientific and Technical Information of China (English)

    RONG Yan-shu; TU Qi-pu

    2005-01-01

    It is important and necessary to get a much longer precipitation series in order to research features of drought/flood and climate change.Based on dryness and wetness grades series of 18 stations in Northern China of 533 years from 1470 to 2002, the Moving Cumulative Frequency Method (MCFM) was developed, moving average precipitation series from 1499 to 2002 were reconstructed by testing three kinds of average precipitation, and the features of climate change and dry and wet periods were researched by using reconstructed precipitation series in the present paper.The results showed that there were good relationship between the reconstructed precipitation series and the observation precipitation series since 1954 and their relative root-mean-square error were below 1.89%, that the relation between reconstructed series and the dryness and wetness grades series were nonlinear and this nonlinear relation implied that reconstructed series were reliable and could became foundation data for researching evolution of the drought and flood.Analysis of climate change upon reconstructed precipitation series revealed that although drought intensity of recent dry period from middle 1970s of 20th century until early 21st century was not the strongest in historical climate of Northern China, intensity and duration of wet period was a great deal decreasing and shortening respectively, climate evolve to aridification situation in Northern China.

  20. [Reconstructive surgery of cranio-orbital injuries].

    Science.gov (United States)

    Eolchiian, S A; Potapov, A A; Serova, N K; Kataev, M G; Sergeeva, L A; Zakharova, N E; Van Damm, P

    2011-01-01

    The aim of study was to optimize evaluation and surgery of cranioorbital injuries in different periods after trauma. Material and methods. We analyzed 374 patients with cranioorbital injuries treated in Burdenko Neurosurgery Institute in different periods after trauma from January 1998 till April 2010. 288 (77%) underwent skull and facial skeleton reconstructive surgery within 24 hours - 7 years after trauma. Clinical and CT examination data were used for preoperative planning and assessment of surgery results. Stereolithographic models (STLM) were applied for preoperative planning in 89 cases. The follow-up period ranged from 4 months up to 10 years. Results. In 254 (88%) of 288 patients reconstruction of anterior skull base, upper and/or midface with restoration of different parts of orbit was performed. Anterior skull base CSF leaks repair, calvarial vault reconstruction, maxillar and mandibular osteosynthesis were done in 34 (12%) cases. 242 (84%) of 288 patients underwent one reconstructive operation, while 46 (16%)--two and more (totally 105 operations). The patients with extended frontoorbital and midface fractures commonly needed more than one operation--in 27 (62.8%) cases. Different plastic materials were used for reconstruction in 233 (80.9%) patients, of those in 147 (51%) cases split calvarial bone grafts were preferred. Good functional and cosmetic results were achieved in 261 (90.6%) of 288 patients while acceptable were observed in 27 (9.4%). Conclusion. Active single-stage surgical management for repair of combined cranioorbital injury in acute period with primary reconstruction optimizes functional and cosmetic outcomes and prevents the problems of delayed or secondary reconstruction. Severe extended anterior skull base, upper and midface injuries when intracranial surgery is needed produced the most challenging difficulties for adequate reconstruction. Randomized trial is required to define the extent and optimal timing of reconstructive surgery

  1. Iterative image reconstruction in ECT

    International Nuclear Information System (INIS)

    Chintu Chen; Ordonez, C.E.; Wernick, M.N.; Aarsvold, J.N.; Gunter, D.L.; Wong, W.H.; Kapp, O.H.; Xiaolong Ouyang; Levenson, M.; Metz, C.E.

    1992-01-01

    A series of preliminary studies has been performed in the authors laboratories to explore the use of a priori information in Bayesian image restoration and reconstruction. One piece of a priori information is the fact that intensities of neighboring pixels tend to be similar if they belong to the same region within which similar tissue characteristics are exhibited. this property of local continuity can be modeled by the use of Gibbs priors, as first suggested by German and Geman. In their investigation, they also included line sites between each pair of neighboring pixels in the Gibbs prior and used discrete binary numbers to indicate the absence or presence of boundaries between regions. These two features of the a priori model permit averaging within boundaries of homogeneous regions to alleviate the degradation caused by Poisson noise. with the use of this Gibbs prior in combination with the technique of stochastic relaxation, German and Geman demonstrated that noise levels can be reduced significantly in 2-D image restoration. They have developed a Bayesian method that utilizes a Gibbs prior to describe the spatial correlation of neighboring regions and takes into account the effect of limited spatial resolution as well. The statistical framework of the proposed approach is based on the data augmentation scheme suggested by Tanner and Wong. Briefly outlined here, this Bayesian method is based on Geman and Geman's approach

  2. Advances in thermographic signal reconstruction

    Science.gov (United States)

    Shepard, Steven M.; Frendberg Beemer, Maria

    2015-05-01

    Since its introduction in 2001, the Thermographic Signal Reconstruction (TSR) method has emerged as one of the most widely used methods for enhancement and analysis of thermographic sequences, with applications extending beyond industrial NDT into biomedical research, art restoration and botany. The basic TSR process, in which a noise reduced replica of each pixel time history is created, yields improvement over unprocessed image data that is sufficient for many applications. However, examination of the resulting logarithmic time derivatives of each TSR pixel replica provides significant insight into the physical mechanisms underlying the active thermography process. The deterministic and invariant properties of the derivatives have enabled the successful implementation of automated defect recognition and measurement systems. Unlike most approaches to analysis of thermography data, TSR does not depend on flawbackground contrast, so that it can also be applied to characterization and measurement of thermal properties of flaw-free samples. We present a summary of recent advances in TSR, a review of the underlying theory and examples of its implementation.

  3. Additive manufacturing in maxillofacial reconstruction

    Directory of Open Access Journals (Sweden)

    Dincă Luciana Laura

    2017-01-01

    Full Text Available In this paper the benefits of using additive manufacturing technologies in maxillofacial reconstruction are highlighted. Based on a real clinical case, the paper describes the manufacture of an implant prototype replacing the right zygomatic bone and a part of maxilla using additive manufacturing technologies. The face is the most expressive part of the human body that makes us unique. It was shown that the maxillofacial prostheses help to improve the psychological state of patients affected by, because low self esteem feeling appears commonly to this patients with the facial defects. The aim of this paper is to show how using additive manufacturing technologies methods within this research, the producing a surgical model will help surgeon to improve the pre-operative planning. For this we used additive manufacturing technologies such as Stereolitography to achieve the biomodel and FDM-fused deposition modelling to obtain a prototype model because these technologies make it possible to obtain prosthesis according to the physical and mechanical requirements of the region of implantation.

  4. High-Performance Phylogeny Reconstruction

    Energy Technology Data Exchange (ETDEWEB)

    Tiffani L. Williams

    2004-11-10

    Under the Alfred P. Sloan Fellowship in Computational Biology, I have been afforded the opportunity to study phylogenetics--one of the most important and exciting disciplines in computational biology. A phylogeny depicts an evolutionary relationship among a set of organisms (or taxa). Typically, a phylogeny is represented by a binary tree, where modern organisms are placed at the leaves and ancestral organisms occupy internal nodes, with the edges of the tree denoting evolutionary relationships. The task of phylogenetics is to infer this tree from observations upon present-day organisms. Reconstructing phylogenies is a major component of modern research programs in many areas of biology and medicine, but it is enormously expensive. The most commonly used techniques attempt to solve NP-hard problems such as maximum likelihood and maximum parsimony, typically by bounded searches through an exponentially-sized tree-space. For example, there are over 13 billion possible trees for 13 organisms. Phylogenetic heuristics that quickly analyze large amounts of data accurately will revolutionize the biological field. This final report highlights my activities in phylogenetics during the two-year postdoctoral period at the University of New Mexico under Prof. Bernard Moret. Specifically, this report reports my scientific, community and professional activities as an Alfred P. Sloan Postdoctoral Fellow in Computational Biology.

  5. Revealing the surface pattern of medieval pattern welded iron objects - etching tests conducted on reconstructed composites

    Czech Academy of Sciences Publication Activity Database

    Thiele, Á.; Hošek, Jiří; Haramza, M.; Török, B.

    2014-01-01

    Roč. 25, č. 1 (2014), s. 18-24 ISSN 1805-7241 R&D Projects: GA ČR GAP405/12/2289 Institutional support: RVO:67985912 Keywords : etching * pattern welding * phosphoric iron * archaeometallurgy Subject RIV: AC - Archeology, Anthropology, Ethnology

  6. Tropical forcing of increased Southern Ocean climate variability revealed by a 140-year subantarctic temperature reconstruction

    NARCIS (Netherlands)

    Turney, Chris S.M.; Fogwill, Christopher J.; Palmer, Jonathan G.; Van Sebille, Erik; Thomas, Zoë; McGlone, Matt; Richardson, Sarah; Wilmshurst, Janet M.; Fenwick, Pavla; Zunz, Violette; Goosse, Hugues; Wilson, Kerry Jayne; Carter, Lionel; Lipson, Mathew; Jones, Richard T.; Harsch, Melanie; Clark, Graeme; Marzinelli, Ezequiel; Rogers, Tracey; Rainsley, Eleanor; Ciasto, Laura; Waterman, Stephanie; Thomas, Elizabeth R.; Visbeck, Martin

    2017-01-01

    Occupying about 14% of the world's surface, the Southern Ocean plays a fundamental role in ocean and atmosphere circulation, carbon cycling and Antarctic ice-sheet dynamics. Unfortunately, high interannual variability and a dearth of instrumental observations before the 1950s limits our

  7. Sensory Evolution and Ecology of Early Turtles Revealed by Digital Endocranial Reconstructions

    OpenAIRE

    Stephan Lautenschlager; Gabriel S. Ferreira; Gabriel S. Ferreira; Gabriel S. Ferreira; Ingmar Werneburg; Ingmar Werneburg; Ingmar Werneburg

    2018-01-01

    In the past few years, new fossil finds and novel methodological approaches have prompted intensive discussions about the phylogenetic affinities of turtles and rekindled the debate on their ecological origin, with very distinct scenarios, such as fossoriality and aquatic habitat occupation, proposed for the earliest stem-turtles. While research has focused largely on the origin of the anapsid skull and unique postcranial anatomy, little is known about the endocranial anatomy of turtles. Here...

  8. Anatomical Reconstruction and Functional Imaging Reveal an Ordered Array of Skylight Polarization Detectors in Drosophila.

    Science.gov (United States)

    Weir, Peter T; Henze, Miriam J; Bleul, Christiane; Baumann-Klausener, Franziska; Labhart, Thomas; Dickinson, Michael H

    2016-05-11

    Many insects exploit skylight polarization as a compass cue for orientation and navigation. In the fruit fly, Drosophila melanogaster, photoreceptors R7 and R8 in the dorsal rim area (DRA) of the compound eye are specialized to detect the electric vector (e-vector) of linearly polarized light. These photoreceptors are arranged in stacked pairs with identical fields of view and spectral sensitivities, but mutually orthogonal microvillar orientations. As in larger flies, we found that the microvillar orientation of the distal photoreceptor R7 changes in a fan-like fashion along the DRA. This anatomical arrangement suggests that the DRA constitutes a detector for skylight polarization, in which different e-vectors maximally excite different positions in the array. To test our hypothesis, we measured responses to polarized light of varying e-vector angles in the terminals of R7/8 cells using genetically encoded calcium indicators. Our data confirm a progression of preferred e-vector angles from anterior to posterior in the DRA, and a strict orthogonality between the e-vector preferences of paired R7/8 cells. We observed decreased activity in photoreceptors in response to flashes of light polarized orthogonally to their preferred e-vector angle, suggesting reciprocal inhibition between photoreceptors in the same medullar column, which may serve to increase polarization contrast. Together, our results indicate that the polarization-vision system relies on a spatial map of preferred e-vector angles at the earliest stage of sensory processing. The fly's visual system is an influential model system for studying neural computation, and much is known about its anatomy, physiology, and development. The circuits underlying motion processing have received the most attention, but researchers are increasingly investigating other functions, such as color perception and object recognition. In this work, we investigate the early neural processing of a somewhat exotic sense, called polarization vision. Because skylight is polarized in an orientation that is rigidly determined by the position of the sun, this cue provides compass information. Behavioral experiments have shown that many species use the polarization pattern in the sky to direct locomotion. Here we describe the input stage of the fly's polarization-vision system. Copyright © 2016 the authors 0270-6474/16/365397-08$15.00/0.

  9. The value of MRI three-dimensional reconstruction in diagnosis and therapy of prostate cancer

    International Nuclear Information System (INIS)

    Li Feiyu; Wang Xiaoying; Xu Yufeng; Xiao Jiangxi; Jiang Xuexiang

    2006-01-01

    Objective: To evaluate three-dimensional reconstruction of MRI images in diagnosis and therapy of prostate cancer. Methods: Twenty-eight patients with proven prostate cancers were recruited in this study. Seventeen of them were diagnosed as having prostate cancer according to the ultrasound guided systemic biopsy. Their MR examinations showed fourteen lesions in the peripheral zone and three in the central gland of the prostate. The other eleven patients underwent MR examination after a period of treatment, including endocrinetherapy and brachytherapy. Using endorectal coil, a series of T 2 -weighted images were acquired on the axial plane. These source images were processed by 3D-Doctor software to reconstruct into three-dimensional images. Results: In the fourteen patients with peripheral zone cancer, reconstruction images could display the 3D regions of cancer and the involvement of capsular. The outspread of central gland and the compression of peripheral zone in patients with central gland cancer could be revealed in the same way. The volumetric changes of the lesion and the prostate after endocrinetherapy could also be perceived through these 3 D images. Similarly, radioactive seeds were revealed in a spatial manner that could be easily evaluated. Conclusion: Three-dimensional reconstruction images were obtained in all patients. They were able to provide stereotyped information about the lesions and their surrounding tissues. MRI three-dimensional reconstruction can be an adjunctive tool in the evaluation of prostate lesions. (authors)

  10. Last millennium Northern Hemisphere summer temperatures from tree rings: Part II, spatially resolved reconstructions

    Science.gov (United States)

    Anchukaitis, Kevin J.; Wilson, Rob; Briffa, Keith R.; Büntgen, Ulf; Cook, Edward R.; D'Arrigo, Rosanne; Davi, Nicole; Esper, Jan; Frank, David; Gunnarson, Björn E.; Hegerl, Gabi; Helama, Samuli; Klesse, Stefan; Krusic, Paul J.; Linderholm, Hans W.; Myglan, Vladimir; Osborn, Timothy J.; Zhang, Peng; Rydval, Milos; Schneider, Lea; Schurer, Andrew; Wiles, Greg; Zorita, Eduardo

    2017-05-01

    Climate field reconstructions from networks of tree-ring proxy data can be used to characterize regional-scale climate changes, reveal spatial anomaly patterns associated with atmospheric circulation changes, radiative forcing, and large-scale modes of ocean-atmosphere variability, and provide spatiotemporal targets for climate model comparison and evaluation. Here we use a multiproxy network of tree-ring chronologies to reconstruct spatially resolved warm season (May-August) mean temperatures across the extratropical Northern Hemisphere (40-90°N) using Point-by-Point Regression (PPR). The resulting annual maps of temperature anomalies (750-1988 CE) reveal a consistent imprint of volcanism, with 96% of reconstructed grid points experiencing colder conditions following eruptions. Solar influences are detected at the bicentennial (de Vries) frequency, although at other time scales the influence of insolation variability is weak. Approximately 90% of reconstructed grid points show warmer temperatures during the Medieval Climate Anomaly when compared to the Little Ice Age, although the magnitude varies spatially across the hemisphere. Estimates of field reconstruction skill through time and over space can guide future temporal extension and spatial expansion of the proxy network.

  11. The values of MSCT multi-planar reconstruction in the diagnosis of lumbar spondylolysis

    International Nuclear Information System (INIS)

    Tan Qixuan; Zhu Gangming; Qian Huirong; Zhong Sheng

    2007-01-01

    Objective: To study the reasonable schedule and diagnostic values of MSCT multi-planar reconstruction in patients with lumbar spondylolysis. Methods: Volume scan ranging from T12 to S1 was done in 540 cases suffered from backleg pain without definite trauma. The lumbar disc axial and whole lumbar axial, sagital, coronal images were reconstructed from raw data of MSCT. Results: Of the 540 cases, 54 spondylolysis in isthmus of lumbar pedicle were demonstrated in 29 ones (29/540, 5.37%). 20 cases were accompanied with spondylolisthesis. The sagital multi-planar reconstruction was the best way to reveal the fissures of spondylolysis and accompanying abnormalities. The detectable ratio of fissures in lumbar disc with axial, whole lumbar axial, sagital and coronal multi-planer reconstruction images were 7.41%, 100%, 100% and 51.85% respectively. Conclusions: MSCT sagital multi-planar reconstruction is the best images to reveal the fissures of spondylolysis. It should be taken as routine item in MSCT examination for the patients with lower back pain. (authors)

  12. Magnetic resonance imaging of cyclops lesion as a cause of persistent morbidity after anterior cruciate ligament reconstruction

    Directory of Open Access Journals (Sweden)

    Amit Kharat

    2015-01-01

    Full Text Available Localized anterior arthrofibrosis (cyclops lesion is having around 1-9.8% frequency rate after anterior cruciate ligament (ACL reconstruction. It has been reported to be a significant cause of loss of knee extension after reconstruction of the ACL of the knee. We present a case report of a patient with prior ACL reconstruction who presented with pain and loss of extension following surgery. MR imaging revealed the typical features of cyclops lesion. Repeat arthroscopy excision of the lesion is the only treatment to reduce the morbidity of the patient.

  13. RECONSTRUCTING WOMANHOOD IN TONY MORRISON'S BELOVED

    Directory of Open Access Journals (Sweden)

    Setefanus Suprajitno

    2000-01-01

    Full Text Available Tony Morrison's fifth novel, Beloved (1987, explores the degradation of slavery imposed upon slaves, even when they were owned by a "humane" slave master. The novel is set in the Reconstruction period, the period after the American civil war. The word reconstruction may be used for the Afro-Americans, especially for the Afro-American women who face double discrimination for being black and women. In dealing with women's oppression, Afro-American women have to reconstruct themselves as an act of survival, and to be aware of the horrors of the experiences which their ancestors had to go through.

  14. High-speed reconstruction of compressed images

    Science.gov (United States)

    Cox, Jerome R., Jr.; Moore, Stephen M.

    1990-07-01

    A compression scheme is described that allows high-definition radiological images with greater than 8-bit intensity resolution to be represented by 8-bit pixels. Reconstruction of the images with their original intensity resolution can be carried out by means of a pipeline architecture suitable for compact, high-speed implementation. A reconstruction system is described that can be fabricated according to this approach and placed between an 8-bit display buffer and the display's video system thereby allowing contrast control of images at video rates. Results for 50 CR chest images are described showing that error-free reconstruction of the original 10-bit CR images can be achieved.

  15. Vertex Reconstruction for AEGIS’ FACT Detector

    CERN Document Server

    Themistokleous, Neofytos

    2017-01-01

    My project dealt with the development of a vertex reconstruction technique to discriminate antihydrogen from background signals in the AEGIS apparatus. It involved the creation of a Toy Monte-Carlo to simulate particle annihilation events, and a vertex reconstruction utility based on the Bayesian theory of probability. The first results based on 107 generated events with single track in the detector are encouraging. For such events, the algorithm can reconstruct the z-coordinate accurately , while for the r-coordinate the result is less accurate.

  16. An iterative reconstruction from truncated projection data

    International Nuclear Information System (INIS)

    Anon.

    1985-01-01

    Various methods have been proposed for tomographic reconstruction from truncated projection data. In this paper, a reconstructive method is discussed which consists of iterations of filtered back-projection, reprojection and some nonlinear processings. First, the method is so constructed that it converges to a fixed point. Then, to examine its effectiveness, comparisons are made by computer experiments with two existing reconstructive methods for truncated projection data, that is, the method of extrapolation based on the smooth assumption followed by filtered back-projection, and modified additive ART

  17. Arthroscopic-Assisted Triangular Fibrocartilage Complex Reconstruction.

    Science.gov (United States)

    Chu-Kay Mak, Michael; Ho, Pak-Cheong

    2017-11-01

    Injury of the triangular fibrocartilage complex (TFCC) is a common cause of ulnar-sided wrist pain. Volar and dorsal radioulnar ligaments and their foveal insertion are the most important stabilizing components of the TFCC. In irreparable tears, anatomic reconstruction of the TFCC aims to restore normal biomechanics and stability of the distal radioulnar joint. We proposed a novel arthroscopic-assisted technique using a palmaris longus tendon graft. Arthroscopic-assisted TFCC reconstruction is a safe and effective approach with outcomes comparable to conventional open reconstruction and may result in a better range of motion from minimizing soft tissue dissection and subsequent scarring. Copyright © 2017 Elsevier Inc. All rights reserved.

  18. Chemistry of plutonium revealed

    International Nuclear Information System (INIS)

    Connick, R.E.

    1992-01-01

    In 1941 one goal of the Manhattan Project was to unravel the chemistry of the synthetic element plutonium as rapidly as possible. In this paper the work carried out at Berkeley from the spring of 1942 to the summer of 1945 is described briefly. The aqueous chemistry of plutonium is quite remarkable. Important insights were obtained from tracer experiments, but the full complexity was not revealed until macroscopic amounts (milligrams) became available. Because processes for separation from fission products were based on aqueous solutions, such solution chemistry was emphasized, particularly precipitation and oxidation-reduction behavior. The latter turned out to be unusually intricate when it was discovered that two more oxidation states existed in aqueous solution than had previously been suspected. Further, an equilibrium was rapidly established among the four aqueous oxidation states, while at the same time any three were not in equilibrium. These and other observations made while doing a crash study of a previously unknown element are reported

  19. Android Emotions Revealed

    DEFF Research Database (Denmark)

    Vlachos, Evgenios; Schärfe, Henrik

    2012-01-01

    This work presents a method for designing facial interfaces for sociable android robots with respect to the fundamental rules of human affect expression. Extending the work of Paul Ekman towards a robotic direction, we follow the judgment-based approach for evaluating facial expressions to test...... findings are based on the results derived from a number of judgments, and suggest that before programming the facial expressions of a Geminoid, the Original should pass through the proposed procedure. According to our recommendations, the facial expressions of an android should be tested by judges, even...... in which case an android robot like the Geminoid|DK –a duplicate of an Original person- reveals emotions convincingly; when following an empirical perspective, or when following a theoretical one. The methodology includes the processes of acquiring the empirical data, and gathering feedback on them. Our...

  20. Breast reconstruction following mastectomy: current status in Australia.

    Science.gov (United States)

    Sandelin, Kerstin; King, Elizabeth; Redman, Sally

    2003-09-01

    Although breast reconstruction provides some advantages for women following mastectomy, few Australian breast cancer patients currently receive reconstruction. In Australia, the routine provision of breast reconstruction will require the development of specific health service delivery models. The present paper reports an analysis of the provision of breast reconstruction in eight sites in Australia. A semi-structured telephone interview was conducted with 10 surgeons offering breast reconstruction as part of their practice, including nine breast or general surgeons and one plastic surgeon. Surgeons reported offering breast reconstruction to all women facing mastectomy; the proportion of women deciding to have breast reconstruction varied between sites with up to 50% of women having a reconstruction at some sites. Most sites offered three types of reconstruction. Two pathways emerged: either the breast surgeon performed the breast surgery in a team with the plastic surgeon who undertook the breast reconstruction or the breast surgeon provided both the breast surgery and the reconstruction. Considerable waiting times for breast reconstruction were reported in the public sector particularly for delayed reconstruction. Surgeons reported receiving training in breast reconstruction from plastic surgeons or from a breast surgery team that performed reconstructions; a number had been trained overseas. No audits of breast reconstruction were being undertaken. Breast reconstruction can be offered on a routine basis in Australia in both the private and public sectors. Women may be more readily able to access breast reconstruction when it is provided by a breast surgeon alone, but the range of reconstruction options may be more limited. If access to breast reconstruction is to be increased, there will be a need to: (i) develop effective models for the rural sector taking account of the lack of plastic surgeons; (ii) address waiting times for reconstruction surgery in the

  1. An Isolated Medial Patellofemoral Ligament Reconstruction with Patellar Tendon Autograft

    Directory of Open Access Journals (Sweden)

    Dariusz Witoński

    2013-01-01

    Full Text Available The aim of the study was to evaluate the results of the medial patellofemoral ligament reconstruction with a medial strip of patellar tendon autograft after a minimum 2-year followup. Ten patients (10 knees were operated on by one surgeon, according to the modified technique, described by Camanho, without any bone plug at free graft end. The mean age of the patients was 27.2 years (ranging from 18 to 42 years. The mean follow-up period was 3 years and 7 months. All patients were reviewed prospectively. At the last follow-up visit, all the patients demonstrated a significant improvement in terms of patellofemoral joint stability, all aspects of the KOOS questionnaire, and Kujala et al.’s score (59.7 points preoperatively and 84.4 points at the last followup. No patient revealed recurrent dislocation. The SF-36 score revealed a significant improvement in bodily pain, general health, physical role functioning, social role functioning, and physical functioning domains. The described MPFL reconstruction with the use of the medial 1/3rd of patella tendon is an effective procedure that gives satisfactorily patellofemoral joint functions, improves the quality of life, and provides much pain relief. It is relatively simple, surgically not extensive, and economically cost-effective procedure.

  2. Dental microwear textures: reconstructing diets of fossil mammals

    International Nuclear Information System (INIS)

    DeSantis, Larisa R G

    2016-01-01

    Dietary information of fossil mammals can be revealed via the analysis of tooth morphology, tooth wear, tooth geochemistry, and the microscopic wear patterns on tooth surfaces resulting from food processing. Although dental microwear has long been used by anthropologists and paleontologists to clarify diets in a diversity of mammals, until recently these methods focused on the counting of wear features (e.g., pits and scratches) from two-dimensional surfaces (typically via scanning electron microscopes or low-magnification light microscopes). The analysis of dental microwear textures can instead reveal dietary information in a broad range of herbivorous, omnivorous, and carnivorous mammals by characterizing microscopic tooth surfaces in three-dimensions, without the counting of individual surface features. To date, dental microwear textures in ungulates, xenarthrans, marsupials, carnivorans, and primates (including humans and their ancestors) are correlated with known dietary behavior in extant taxa and reconstruct ancient diets in a diversity of prehistoric mammals. For example, tough versus hard object feeding can be characterized across disparate phylogenetic groups and can distinguish grazers, folivorous, and flesh consumers (tougher food consumers) from woody browsers, frugivores, and bone consumers (harder object feeders). This paper reviews how dental microwear textures can be useful to reconstructing diets in a broad array of living and extinct mammals, with commentary on areas of future research. (topical review)

  3. Late summer temperature reconstruction based on tree-ring density for Sygera Mountain, southeastern Tibetan Plateau

    Science.gov (United States)

    Li, Mingyong; Duan, Jianping; Wang, Lily; Zhu, Haifeng

    2018-04-01

    Although several tree-ring density-based summer/late summer temperature reconstructions have been developed on the Tibetan Plateau (TP), the understanding of the local/regional characteristics of summer temperature fluctuations on a long-term scale in some regions is still limited. To improve our understanding in these aspects, more local or regional summer temperature reconstructions extending back over several centuries are required. In this study, a new mean latewood density (LWD) chronology from Abies georgei var. smithii from the upper tree line of Sygera Mountain on the southeastern TP was developed to reconstruct the late summer temperature variability since 1820 CE. The bootstrapped correlation analysis showed that the LWD chronology index was significantly and positively correlated with the late summer (August-September) mean temperatures (r1950-2008 = 0.63, p < 0.001) recorded at the nearest meteorological station and that this reconstruction has considerable potential to represent the late summer temperature variability at the regional scale. Our late summer temperature reconstruction revealed three obvious cold periods (i.e., 1872-1908, 1913-1937 and 1941-1966) and two relatively warm phases (i.e., 1821-1871 and 1970-2008) over the past two centuries. Comparisons of our reconstruction with other independent tree-ring-based temperature reconstructions, glacier fluctuations and historical documental records from neighboring regions showed good agreement in these relatively cold and warm intervals. Our reconstruction exhibits an overall increasing temperature trend since the 1960s, providing new evidence supporting the recent warming of the TP. Moreover, our results also indicate that the late summer temperature variability of Sygera Mountain on the southeastern TP has potential links with the Pacific Decadal Oscillation (PDO).

  4. Reconstructed Ancestral Enzymes Impose a Fitness Cost upon Modern Bacteria Despite Exhibiting Favourable Biochemical Properties.

    Science.gov (United States)

    Hobbs, Joanne K; Prentice, Erica J; Groussin, Mathieu; Arcus, Vickery L

    2015-10-01

    Ancestral sequence reconstruction has been widely used to study historical enzyme evolution, both from biochemical and cellular perspectives. Two properties of reconstructed ancestral proteins/enzymes are commonly reported--high thermostability and high catalytic activity--compared with their contemporaries. Increased protein stability is associated with lower aggregation rates, higher soluble protein abundance and a greater capacity to evolve, and therefore, these proteins could be considered "superior" to their contemporary counterparts. In this study, we investigate the relationship between the favourable in vitro biochemical properties of reconstructed ancestral enzymes and the organismal fitness they confer in vivo. We have previously reconstructed several ancestors of the enzyme LeuB, which is essential for leucine biosynthesis. Our initial fitness experiments revealed that overexpression of ANC4, a reconstructed LeuB that exhibits high stability and activity, was only able to partially rescue the growth of a ΔleuB strain, and that a strain complemented with this enzyme was outcompeted by strains carrying one of its descendants. When we expanded our study to include five reconstructed LeuBs and one contemporary, we found that neither in vitro protein stability nor the catalytic rate was correlated with fitness. Instead, fitness showed a strong, negative correlation with estimated evolutionary age (based on phylogenetic relationships). Our findings suggest that, for reconstructed ancestral enzymes, superior in vitro properties do not translate into organismal fitness in vivo. The molecular basis of the relationship between fitness and the inferred age of ancestral LeuB enzymes is unknown, but may be related to the reconstruction process. We also hypothesise that the ancestral enzymes may be incompatible with the other, contemporary enzymes of the metabolic network.

  5. Immediate, but Not Delayed, Microsurgical Skull Reconstruction Exacerbates Brain Damage in Experimental Traumatic Brain Injury Model

    Science.gov (United States)

    Lau, Tsz; Kaneko, Yuji; van Loveren, Harry; Borlongan, Cesario V.

    2012-01-01

    Moderate to severe traumatic brain injury (TBI) often results in malformations to the skull. Aesthetic surgical maneuvers may offer normalized skull structure, but inconsistent surgical closure of the skull area accompanies TBI. We examined whether wound closure by replacement of skull flap and bone wax would allow aesthetic reconstruction of the TBI-induced skull damage without causing any detrimental effects to the cortical tissue. Adult male Sprague-Dawley rats were subjected to TBI using the controlled cortical impact (CCI) injury model. Immediately after the TBI surgery, animals were randomly assigned to skull flap replacement with or without bone wax or no bone reconstruction, then were euthanized at five days post-TBI for pathological analyses. The skull reconstruction provided normalized gross bone architecture, but 2,3,5-triphenyltetrazolium chloride and hematoxylin and eosin staining results revealed larger cortical damage in these animals compared to those that underwent no surgical maneuver at all. Brain swelling accompanied TBI, especially the severe model, that could have relieved the intracranial pressure in those animals with no skull reconstruction. In contrast, the immediate skull reconstruction produced an upregulation of the edema marker aquaporin-4 staining, which likely prevented the therapeutic benefits of brain swelling and resulted in larger cortical infarcts. Interestingly, TBI animals introduced to a delay in skull reconstruction (i.e., 2 days post-TBI) showed significantly reduced edema and infarcts compared to those exposed to immediate skull reconstruction. That immediate, but not delayed, skull reconstruction may exacerbate TBI-induced cortical tissue damage warrants a careful consideration of aesthetic repair of the skull in TBI. PMID:22438975

  6. Reconstruction of convex bodies from surface tensors

    DEFF Research Database (Denmark)

    Kousholt, Astrid; Kiderlen, Markus

    . The output of the reconstruction algorithm is a polytope P, where the surface tensors of P and K are identical up to rank s. We establish a stability result based on a generalization of Wirtinger’s inequality that shows that for large s, two convex bodies are close in shape when they have identical surface...... that are translates of each other. An algorithm for reconstructing an unknown convex body in R 2 from its surface tensors up to a certain rank is presented. Using the reconstruction algorithm, the shape of an unknown convex body can be approximated when only a finite number s of surface tensors are available...... tensors up to rank s. This is used to establish consistency of the developed reconstruction algorithm....

  7. Structure-based bayesian sparse reconstruction

    KAUST Repository

    Quadeer, Ahmed Abdul; Al-Naffouri, Tareq Y.

    2012-01-01

    Sparse signal reconstruction algorithms have attracted research attention due to their wide applications in various fields. In this paper, we present a simple Bayesian approach that utilizes the sparsity constraint and a priori statistical

  8. Social consciousness in post-conflict reconstruction.

    NARCIS (Netherlands)

    Gans, Ben; Rutkowski, Anne; Kaminski, B.; Kersten, G.E.; Szapiro, T.

    This paper sheds light on the complexities intergovernmental organizations are facing during post-conflict reconstruction. The article discusses the added-value of Social Responsibility in the context of the Comprehensive Approach, involving collaboration amongst defense, diplomacy and development.

  9. Tissue Engineering in Vesical Reconstruction | Morsi | African ...

    African Journals Online (AJOL)

    TE) and describes the possible future clinical application in bladder reconstruction. Material and Methods: This review is based on an electronic search of the PubMed database and recently published presentations between November 2008 and ...

  10. Simulation and reconstruction of the BESIII EMC

    International Nuclear Information System (INIS)

    He Miao

    2011-01-01

    The simulation and reconstruction software of the BES III Electromagnetic Calorimeter (EMC), are developed based on the object-oriented language C++, in the framework of Gaudi. Performance of EMC are studied with data and compared with Monte Carlo samples.

  11. Maximum Likelihood Reconstruction for Magnetic Resonance Fingerprinting.

    Science.gov (United States)

    Zhao, Bo; Setsompop, Kawin; Ye, Huihui; Cauley, Stephen F; Wald, Lawrence L

    2016-08-01

    This paper introduces a statistical estimation framework for magnetic resonance (MR) fingerprinting, a recently proposed quantitative imaging paradigm. Within this framework, we present a maximum likelihood (ML) formalism to estimate multiple MR tissue parameter maps directly from highly undersampled, noisy k-space data. A novel algorithm, based on variable splitting, the alternating direction method of multipliers, and the variable projection method, is developed to solve the resulting optimization problem. Representative results from both simulations and in vivo experiments demonstrate that the proposed approach yields significantly improved accuracy in parameter estimation, compared to the conventional MR fingerprinting reconstruction. Moreover, the proposed framework provides new theoretical insights into the conventional approach. We show analytically that the conventional approach is an approximation to the ML reconstruction; more precisely, it is exactly equivalent to the first iteration of the proposed algorithm for the ML reconstruction, provided that a gridding reconstruction is used as an initialization.

  12. Vertex Reconstruction and Performance in ATLAS

    CERN Document Server

    Whitmore, Ben William; The ATLAS collaboration

    2017-01-01

    Efficient and precise reconstruction of the primary vertices in LHC collisions is essential in both the reconstruction of the full kinematic properties of a hard-scatter event and of soft interactions as a measure of the amount of pile-up. The reconstruction of the primary vertices in the busy, high pile up environment of the LHC is a challenging task. The challenges and novel methods developed by the ATLAS experiment to reconstruct vertices in such environments will be presented. The performance of the current vertexing algorithms using Run-2 data will be presented and compared to results from simulation. Additionally, data-driven methods to evaluate vertex resolution, and details of upgrades to the ATLAS inner detector will be presented.

  13. Advances in Bioprinting Technologies for Craniofacial Reconstruction.

    Science.gov (United States)

    Visscher, Dafydd O; Farré-Guasch, Elisabet; Helder, Marco N; Gibbs, Susan; Forouzanfar, Tymour; van Zuijlen, Paul P; Wolff, Jan

    2016-09-01

    Recent developments in craniofacial reconstruction have shown important advances in both the materials and methods used. While autogenous tissue is still considered to be the gold standard for these reconstructions, the harvesting procedure remains tedious and in many cases causes significant donor site morbidity. These limitations have subsequently led to the development of less invasive techniques such as 3D bioprinting that could offer possibilities to manufacture patient-tailored bioactive tissue constructs for craniofacial reconstruction. Here, we discuss the current technological and (pre)clinical advances of 3D bioprinting for use in craniofacial reconstruction and highlight the challenges that need to be addressed in the coming years. Copyright © 2016 Elsevier Ltd. All rights reserved.

  14. Template Assembly for Detailed Urban Reconstruction

    KAUST Repository

    Nan, Liangliang; Wonka, Peter; Ghanem, Bernard; Jiang, Caigui

    2015-01-01

    Structure from Motion and Multi View Stereo, and we model a set of 3D templates of facade details. Next, we optimize the initial coarse model to enforce consistency between geometry and appearance (texture images). Then, building details are reconstructed

  15. Medical image reconstruction. A conceptual tutorial

    International Nuclear Information System (INIS)

    Zeng, Gengsheng Lawrence

    2010-01-01

    ''Medical Image Reconstruction: A Conceptual Tutorial'' introduces the classical and modern image reconstruction technologies, such as two-dimensional (2D) parallel-beam and fan-beam imaging, three-dimensional (3D) parallel ray, parallel plane, and cone-beam imaging. This book presents both analytical and iterative methods of these technologies and their applications in X-ray CT (computed tomography), SPECT (single photon emission computed tomography), PET (positron emission tomography), and MRI (magnetic resonance imaging). Contemporary research results in exact region-of-interest (ROI) reconstruction with truncated projections, Katsevich's cone-beam filtered backprojection algorithm, and reconstruction with highly undersampled data with l 0 -minimization are also included. (orig.)

  16. Extended Reconstructed Sea Surface Temperature (ERSST)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Extended Reconstructed Sea Surface Temperature (ERSST) dataset is a global monthly sea surface temperature analysis derived from the International Comprehensive...

  17. DD4Hep based event reconstruction

    CERN Document Server

    AUTHOR|(SzGeCERN)683529; Frank, Markus; Gaede, Frank-Dieter; Hynds, Daniel; Lu, Shaojun; Nikiforou, Nikiforos; Petric, Marko; Simoniello, Rosa; Voutsinas, Georgios Gerasimos

    The DD4HEP detector description toolkit offers a flexible and easy-to-use solution for the consistent and complete description of particle physics detectors in a single system. The sub-component DDREC provides a dedicated interface to the detector geometry as needed for event reconstruction. With DDREC there is no need to define an additional, separate reconstruction geometry as is often done in HEP, but one can transparently extend the existing detailed simulation model to be also used for the reconstruction. Based on the extension mechanism of DD4HEP, DDREC allows one to attach user defined data structures to detector elements at all levels of the geometry hierarchy. These data structures define a high level view onto the detectors describing their physical properties, such as measurement layers, point resolutions, and cell sizes. For the purpose of charged particle track reconstruction, dedicated surface objects can be attached to every volume in the detector geometry. These surfaces provide the measuremen...

  18. Speeding up image reconstruction in computed tomography

    CERN Multimedia

    CERN. Geneva

    2018-01-01

    Computed tomography (CT) is a technique for imaging cross-sections of an object using X-ray measurements taken from different angles. In last decades a significant progress has happened there: today advanced algorithms allow fast image reconstruction and obtaining high-quality images even with missing or dirty data, modern detectors provide high resolution without increasing radiation dose, and high-performance multi-core computing devices are there to help us solving such tasks even faster. I will start with CT basics, then briefly present existing classes of reconstruction algorithms and their differences. After that I will proceed to employing distinctive architectural features of modern multi-core devices (CPUs and GPUs) and popular program interfaces (OpenMP, MPI, CUDA, OpenCL) for developing effective parallel realizations of image reconstruction algorithms. Decreasing full reconstruction time from long hours up to minutes or even seconds has a revolutionary impact in diagnostic medicine and industria...

  19. Model-centric software architecture reconstruction

    NARCIS (Netherlands)

    Stoermer, C.; Rowe, A.; O'Brien, L.; Verhoef, C.

    2006-01-01

    Much progress has been achieved in defining methods, techniques, and tools for software architecture reconstruction (SAR). However, less progress has been achieved in constructing reasoning frameworks from existing systems that support organizations in architecture analysis and design decisions.

  20. Parallel CT image reconstruction based on GPUs

    International Nuclear Information System (INIS)

    Flores, Liubov A.; Vidal, Vicent; Mayo, Patricia; Rodenas, Francisco; Verdú, Gumersindo

    2014-01-01

    In X-ray computed tomography (CT) iterative methods are more suitable for the reconstruction of images with high contrast and precision in noisy conditions from a small number of projections. However, in practice, these methods are not widely used due to the high computational cost of their implementation. Nowadays technology provides the possibility to reduce effectively this drawback. It is the goal of this work to develop a fast GPU-based algorithm to reconstruct high quality images from under sampled and noisy projection data. - Highlights: • We developed GPU-based iterative algorithm to reconstruct images. • Iterative algorithms are capable to reconstruct images from under sampled set of projections. • The computer cost of the implementation of the developed algorithm is low. • The efficiency of the algorithm increases for the large scale problems

  1. Quantitative analysis of emphysema and airway measurements according to iterative reconstruction algorithms: comparison of filtered back projection, adaptive statistical iterative reconstruction and model-based iterative reconstruction

    International Nuclear Information System (INIS)

    Choo, Ji Yung; Goo, Jin Mo; Park, Chang Min; Park, Sang Joon; Lee, Chang Hyun; Shim, Mi-Suk

    2014-01-01

    To evaluate filtered back projection (FBP) and two iterative reconstruction (IR) algorithms and their effects on the quantitative analysis of lung parenchyma and airway measurements on computed tomography (CT) images. Low-dose chest CT obtained in 281 adult patients were reconstructed using three algorithms: FBP, adaptive statistical IR (ASIR) and model-based IR (MBIR). Measurements of each dataset were compared: total lung volume, emphysema index (EI), airway measurements of the lumen and wall area as well as average wall thickness. Accuracy of airway measurements of each algorithm was also evaluated using an airway phantom. EI using a threshold of -950 HU was significantly different among the three algorithms in decreasing order of FBP (2.30 %), ASIR (1.49 %) and MBIR (1.20 %) (P < 0.01). Wall thickness was also significantly different among the three algorithms with FBP (2.09 mm) demonstrating thicker walls than ASIR (2.00 mm) and MBIR (1.88 mm) (P < 0.01). Airway phantom analysis revealed that MBIR showed the most accurate value for airway measurements. The three algorithms presented different EIs and wall thicknesses, decreasing in the order of FBP, ASIR and MBIR. Thus, care should be taken in selecting the appropriate IR algorithm on quantitative analysis of the lung. (orig.)

  2. Quantitative analysis of emphysema and airway measurements according to iterative reconstruction algorithms: comparison of filtered back projection, adaptive statistical iterative reconstruction and model-based iterative reconstruction

    Energy Technology Data Exchange (ETDEWEB)

    Choo, Ji Yung [Seoul National University Medical Research Center, Department of Radiology, Seoul National University College of Medicine, and Institute of Radiation Medicine, Seoul (Korea, Republic of); Korea University Ansan Hospital, Ansan-si, Department of Radiology, Gyeonggi-do (Korea, Republic of); Goo, Jin Mo; Park, Chang Min; Park, Sang Joon [Seoul National University Medical Research Center, Department of Radiology, Seoul National University College of Medicine, and Institute of Radiation Medicine, Seoul (Korea, Republic of); Seoul National University, Cancer Research Institute, Seoul (Korea, Republic of); Lee, Chang Hyun; Shim, Mi-Suk [Seoul National University Medical Research Center, Department of Radiology, Seoul National University College of Medicine, and Institute of Radiation Medicine, Seoul (Korea, Republic of)

    2014-04-15

    To evaluate filtered back projection (FBP) and two iterative reconstruction (IR) algorithms and their effects on the quantitative analysis of lung parenchyma and airway measurements on computed tomography (CT) images. Low-dose chest CT obtained in 281 adult patients were reconstructed using three algorithms: FBP, adaptive statistical IR (ASIR) and model-based IR (MBIR). Measurements of each dataset were compared: total lung volume, emphysema index (EI), airway measurements of the lumen and wall area as well as average wall thickness. Accuracy of airway measurements of each algorithm was also evaluated using an airway phantom. EI using a threshold of -950 HU was significantly different among the three algorithms in decreasing order of FBP (2.30 %), ASIR (1.49 %) and MBIR (1.20 %) (P < 0.01). Wall thickness was also significantly different among the three algorithms with FBP (2.09 mm) demonstrating thicker walls than ASIR (2.00 mm) and MBIR (1.88 mm) (P < 0.01). Airway phantom analysis revealed that MBIR showed the most accurate value for airway measurements. The three algorithms presented different EIs and wall thicknesses, decreasing in the order of FBP, ASIR and MBIR. Thus, care should be taken in selecting the appropriate IR algorithm on quantitative analysis of the lung. (orig.)

  3. Language distance and tree reconstruction

    International Nuclear Information System (INIS)

    Petroni, Filippo; Serva, Maurizio

    2008-01-01

    Languages evolve over time according to a process in which reproduction, mutation and extinction are all possible. This is very similar to haploid evolution for asexual organisms and for the mitochondrial DNA of complex ones. Exploiting this similarity, it is possible, in principle, to verify hypotheses concerning the relationship among languages and to reconstruct their family tree. The key point is the definition of the distances among pairs of languages in analogy with the genetic distances among pairs of organisms. Distances can be evaluated by comparing grammar and/or vocabulary, but while it is difficult, if not impossible, to quantify grammar distance, it is possible to measure a distance from vocabulary differences. The method used by glottochronology computes distances from the percentage of shared 'cognates', which are words with a common historical origin. The weak point of this method is that subjective judgment plays a significant role. Here we define the distance of two languages by considering a renormalized edit distance among words with the same meaning and averaging over the two hundred words contained in a Swadesh list. In our approach the vocabulary of a language is the analogue of DNA for organisms. The advantage is that we avoid subjectivity and, furthermore, reproducibility of results is guaranteed. We apply our method to the Indo-European and the Austronesian groups, considering, in both cases, fifty different languages. The two trees obtained are, in many respects, similar to those found by glottochronologists, with some important differences as regards the positions of a few languages. In order to support these different results we separately analyze the structure of the distances of these languages with respect to all the others

  4. Language distance and tree reconstruction

    Science.gov (United States)

    Petroni, Filippo; Serva, Maurizio

    2008-08-01

    Languages evolve over time according to a process in which reproduction, mutation and extinction are all possible. This is very similar to haploid evolution for asexual organisms and for the mitochondrial DNA of complex ones. Exploiting this similarity, it is possible, in principle, to verify hypotheses concerning the relationship among languages and to reconstruct their family tree. The key point is the definition of the distances among pairs of languages in analogy with the genetic distances among pairs of organisms. Distances can be evaluated by comparing grammar and/or vocabulary, but while it is difficult, if not impossible, to quantify grammar distance, it is possible to measure a distance from vocabulary differences. The method used by glottochronology computes distances from the percentage of shared 'cognates', which are words with a common historical origin. The weak point of this method is that subjective judgment plays a significant role. Here we define the distance of two languages by considering a renormalized edit distance among words with the same meaning and averaging over the two hundred words contained in a Swadesh list. In our approach the vocabulary of a language is the analogue of DNA for organisms. The advantage is that we avoid subjectivity and, furthermore, reproducibility of results is guaranteed. We apply our method to the Indo-European and the Austronesian groups, considering, in both cases, fifty different languages. The two trees obtained are, in many respects, similar to those found by glottochronologists, with some important differences as regards the positions of a few languages. In order to support these different results we separately analyze the structure of the distances of these languages with respect to all the others.

  5. Sulfur Geochemistry of a Lacustrine Record from Taiwan Reveals Enhanced Marine Aerosol Input during the Early Holocene.

    Science.gov (United States)

    Ding, Xiaodong; Li, Dawei; Zheng, Liwei; Bao, Hongyan; Chen, Huei-Fen; Kao, Shuh-Ji

    2016-12-12

    Lacustrine record of marine aerosol input has rarely been documented. Here, we present the sulfur geochemistry during the last deglaciation and early Holocene of a sediment core retrieved from the Dongyuan Lake in southern Taiwan. An unusually high sulfur peak accompanying pyrite presence is observed at 10.5 ka BP. Such high sulfur content in lacustrine record is unusual. The δ 34 S of sulfur varied from +9.5 to + 17.1‰ with two significant positive shifts at 10.5 and 9.4 ka BP. The sources of sulfur and potential processes involving the sulfur isotope variation including bacterial sulfate reduction, volcanic emissions, in-catchment sulfide oxidation and marine aerosol input are discussed. Enhanced marine aerosol input is the most likely explanation for such sulfur peaks and δ 34 S shifts. The positive δ 34 S shifts appeared concurrently with the maximum landslide events over Taiwan resulted from enhanced typhoon activities. The synchronicity among records suggests that increased typhoon activities promoted sea spray, and consequently enhanced the marine aerosol input with 34 S-enriched sulfate. Our sulfur geochemistry data revealed sea spray history and marine influence onto terrestrial environment at coastal regions. Wider coverage of spatial-temporal lacustrine sulfur geochemistry record is needed to validate the applicability of sulfur proxy in paleoenvironmental research.

  6. Software Architecture Reconstruction Method, a Survey

    OpenAIRE

    Zainab Nayyar; Nazish Rafique

    2014-01-01

    Architecture reconstruction belongs to a reverse engineering process, in which we move from code to architecture level for reconstructing architecture. Software architectures are the blue prints of projects which depict the external overview of the software system. Mostly maintenance and testing cause the software to deviate from its original architecture, because sometimes for enhancing the functionality of a system the software deviates from its documented specifications, some new modules a...

  7. Reconstructing weak values without weak measurements

    International Nuclear Information System (INIS)

    Johansen, Lars M.

    2007-01-01

    I propose a scheme for reconstructing the weak value of an observable without the need for weak measurements. The post-selection in weak measurements is replaced by an initial projector measurement. The observable can be measured using any form of interaction, including projective measurements. The reconstruction is effected by measuring the change in the expectation value of the observable due to the projector measurement. The weak value may take nonclassical values if the projector measurement disturbs the expectation value of the observable

  8. 3D Reconstruction of NMR Images

    Directory of Open Access Journals (Sweden)

    Peter Izak

    2007-01-01

    Full Text Available This paper introduces experiment of 3D reconstruction NMR images scanned from magnetic resonance device. There are described methods which can be used for 3D reconstruction magnetic resonance images in biomedical application. The main idea is based on marching cubes algorithm. For this task was chosen sophistication method by program Vision Assistant, which is a part of program LabVIEW.

  9. Medial canthal reconstruction with multiple local flaps

    Directory of Open Access Journals (Sweden)

    Akihiro Ogino

    2018-03-01

    Conclusion: This method is somewhat complicated compared to reconstruction with a single flap, but it is a combination of standard local flaps and is a simple reconstructive procedure. By adding additional resection, the suture line is consistent with the border of the facial unit, so postoperative scarring is inconspicuous. This technique is aesthetically useful because of the continuity of colour and texture resulting from the use of adjacent flaps.

  10. Reconstructions in ultrasound modulated optical tomography

    KAUST Repository

    Allmaras, Moritz; Bangerth, Wolfgang

    2011-01-01

    We introduce a mathematical model for ultrasound modulated optical tomography and present a simple reconstruction scheme for recovering the spatially varying optical absorption coefficient from scanning measurements with narrowly focused ultrasound signals. Computational results for this model show that the reconstruction of sharp features of the absorption coefficient is possible. A formal linearization of the model leads to an equation with a Fredholm operator, which explains the stability observed in our numerical experiments. © de Gruyter 2011.

  11. Upgrade trigger & reconstruction strategy: 2017 milestone

    CERN Document Server

    Albrecht, Johannes; Campora Perez, Daniel Hugo; Cattaneo, Marco; Marco, Clemencic; Couturier, Ben; Dziurda, Agnieszka; Fitzpatrick, Conor; Fontana, Marianna; Grillo, Lucia; Hasse, Christoph; Hill, Donal; Jones, Christopher Rob; Lemaitre, Florian; Lupton, Olli; Matev, Rosen; Pearce, Alex; Polci, Francesco; Promberger, Laura; Ponce, Sebastien; Quagliani, Renato; Raven, Gerhard; Sciascia, Barbara; Schiller, Manuel Tobias; Stahl, Sascha; Szymanski, Maciej Pawel; Chefdeville, Maximilien

    2018-01-01

    The LHCb collaboration is currently preparing an update of the experiment to take data in Run 3 of the LHC. The dominant feature of this upgrade is a trigger-less readout of the full detector followed by a full software trigger. To make optimal use of the collected data, the events are reconstructed at the inelastic collision rate of 30 MHz. This document presents the baseline trigger and reconstruction strategy as of the end of 2017.

  12. Electron Reconstruction in the CMS Electromagnetic Calorimeter

    CERN Document Server

    Meschi, Emilio; Seez, Christopher; Vikas, Pratibha

    2001-01-01

    This note describes the reconstruction of electrons using the electromagnetic calorimeter (ECAL) alone. This represents the first step in the High Level Trigger reconstruction and selection chain. By making "super-clusters" (i.e. clusters of clusters) much of the energy radiated by bremsstrahlung in the tracker material can be recovered. Representative performance figures for energy and position resolution in the barrel are given.

  13. Developments on jet reconstruction by DELPHI

    CERN Document Server

    Kiskinen, A

    2002-01-01

    The most relevant techniques used by DELPHI to identify jets in multihadronic final states are reviewed. The performance of jet reconstruction algorithms is analysed together with the additional use of energy and momentum conservation in order to allow for a precise reconstruction of the event kinematics. Also jet flavour tagging methods are summarised. Applications in some analyses like searches for new particles such as Higgs bosons, W mass physics and QCD studies are presented. (9 refs).

  14. The Temporalis Muscle Flap in Maxillofacial Reconstruction

    International Nuclear Information System (INIS)

    ElSheikh, M; Zeitoun, I; ElMassry, M A K

    1991-01-01

    The temporalis muscle flap is a very versatile and valuable axial flap, which could be used in various reconstructive procedures in and around the oro-maxillofacial region. The surgical anatomy, vascular pattern and technique of elevation of the flap are described, together with our experience in different reconstructive situations. The advantages and disadvantages of the use of this flap are thoroughly discussed taking into consideration the potentiality of cancer recurrence under cover of the flap. (author)

  15. RADON reconstruction in longitudinal phase space

    International Nuclear Information System (INIS)

    Mane, V.; Peggs, S.; Wei, J.

    1997-01-01

    Longitudinal particle motion in circular accelerators is typically monitoring by one dimensional (1-D) profiles. Adiabatic particle motion in two dimensional (2-D) phase space can be reconstructed with tomographic techniques, using 1-D profiles. A computer program RADON has been developed in C++ to process digitized mountain range data and perform the phase space reconstruction for the AGS, and later for Relativistic Heavy Ion Collider (RHIC)

  16. 3-D image reconstruction in radiology

    International Nuclear Information System (INIS)

    Grangeat, P.

    1999-01-01

    In this course, we present highlights on fully 3-D image reconstruction algorithms used in 3-D X-ray Computed Tomography (3-D-CT) and 3-D Rotational Radiography (3-D-RR). We first consider the case of spiral CT with a one-row detector. Starting from the 2-D fan-beam inversion formula for a circular trajectory, we introduce spiral CT 3-D image reconstruction algorithm using axial interpolation for each transverse slice. In order to improve the X-ray detection efficiency and to speed the acquisition process, the future is to use multi-row detectors associated with small angle cone-beam geometry. The generalization of the 2-D fan-beam image reconstruction algorithm to cone beam defined direct inversion formula referred as Feldkamp's algorithm for a circular trajectory and Wang's algorithm for a spiral trajectory. However, large area detectors does exist such as Radiological Image Intensifiers or in a near future solid state detectors. To get a larger zoom effect, it defines a cone-beam geometry associated with a large aperture angle. For this case, we introduce indirect image reconstruction algorithm by plane re-binning in the Radon domain. We will present some results from a prototype MORPHOMETER device using the RADON reconstruction software. Lastly, we consider the special case of 3-D Rotational Digital Subtraction Angiography with a restricted number of views. We introduce constraint optimization algorithm using quadratic, entropic or half-quadratic constraints. Generalized ART (Algebraic Reconstruction Technique) iterative reconstruction algorithm can be derived from the Bregman algorithm. We present reconstructed vascular trees from a prototype MORPHOMETER device. (author)

  17. A Composite Buccal Flap for Alar Based Defect Reconstruction: A Technical Note

    Directory of Open Access Journals (Sweden)

    A. Khojasteh

    2011-12-01

    Full Text Available It is difficult to reconstruct an alar defect with cartilage involvement. Here in the authors report a case of traumatic alar loss during childhood in which an alar reconstruction was carried out with a composite auricular graft put over the pedicle buccal flap which was rotated and passed through the intraoral side. The lining skin and auricular cartilage for the flap was obtained from the auricular region which was acceptable for the patient. All procedures were performed under general anesthesia. One year follow up revealed satisfactory results with minimal contracture of the graft.

  18. Simulation and track reconstruction for beam telescopes

    CERN Document Server

    Maqbool, Salman

    2017-01-01

    Beam telescopes are used for testing new detectors under development. Sensors are placed and a particle beam is passed through them. To test these novel detectors and determine their properties, the particle tracks need to be reconstructed from the known detectors in the telescope. Based on the reconstructed track, it’s predicted hits on the Device under Test (DUT) are compared with the actual hits on the DUT. Several methods exist for track reconstruction, but most of them don’t account for the effects of multiple scattering. General Broken Lines is one such algorithm which incorporates these effects during reconstruction. The aim of this project was to simulate the beam telescope and extend the track reconstruction framework for the FE-I4 telescope, which takes these effects into account. Section 1 introduces the problem, while section 2 focuses on beam telescopes. This is followed by the Allpix2 simulation framework in Section 3. And finally, Section 4 introduces the Proteus track reconstruction framew...

  19. Trends in Materials Science for Ligament Reconstruction.

    Science.gov (United States)

    Sava, Oana Roxana; Sava, Daniel Florin; Radulescu, Marius; Albu, Madalina Georgiana; Ficai, Denisa; Veloz-Castillo, Maria Fernanda; Mendez-Rojas, Miguel Angel; Ficai, Anton

    2017-01-01

    The number of ligament injuries increases every year and concomitantly the need for materials or systems that can reconstruct the ligament. Limitations imposed by autografts and allografts in ligament reconstruction together with the advances in materials science and biology have attracted a lot of interest for developing systems and materials for ligament replacement or reconstruction. This review intends to synthesize the major steps taken in the development of polymer-based materials for anterior cruciate ligament, their advantages and drawbacks and the results of different in vitro and in vivo tests. Until present, there is no successful polymer system for ligament reconstruction implanted in humans. The developing field of synthetic polymers for ligament reconstruction still has a lot of potential. In addition, several nano-structured materials, made of nanofibers or in the form of ceramic/polymeric nanocomposites, are attracting the interest of several groups due to their potential use as engineered scaffolds that mimic the native environment of cells, increasing the chances for tissue regeneration. Here, we review the last 15 years of literature in order to obtain a better understanding on the state-of-the-art that includes the usage of nano- and poly-meric materials for ligament reconstruction, and to draw perspectives on the future development of the field. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

  20. Accelerated Compressed Sensing Based CT Image Reconstruction.

    Science.gov (United States)

    Hashemi, SayedMasoud; Beheshti, Soosan; Gill, Patrick R; Paul, Narinder S; Cobbold, Richard S C

    2015-01-01

    In X-ray computed tomography (CT) an important objective is to reduce the radiation dose without significantly degrading the image quality. Compressed sensing (CS) enables the radiation dose to be reduced by producing diagnostic images from a limited number of projections. However, conventional CS-based algorithms are computationally intensive and time-consuming. We propose a new algorithm that accelerates the CS-based reconstruction by using a fast pseudopolar Fourier based Radon transform and rebinning the diverging fan beams to parallel beams. The reconstruction process is analyzed using a maximum-a-posterior approach, which is transformed into a weighted CS problem. The weights involved in the proposed model are calculated based on the statistical characteristics of the reconstruction process, which is formulated in terms of the measurement noise and rebinning interpolation error. Therefore, the proposed method not only accelerates the reconstruction, but also removes the rebinning and interpolation errors. Simulation results are shown for phantoms and a patient. For example, a 512 × 512 Shepp-Logan phantom when reconstructed from 128 rebinned projections using a conventional CS method had 10% error, whereas with the proposed method the reconstruction error was less than 1%. Moreover, computation times of less than 30 sec were obtained using a standard desktop computer without numerical optimization.

  1. Accelerated Compressed Sensing Based CT Image Reconstruction

    Directory of Open Access Journals (Sweden)

    SayedMasoud Hashemi

    2015-01-01

    Full Text Available In X-ray computed tomography (CT an important objective is to reduce the radiation dose without significantly degrading the image quality. Compressed sensing (CS enables the radiation dose to be reduced by producing diagnostic images from a limited number of projections. However, conventional CS-based algorithms are computationally intensive and time-consuming. We propose a new algorithm that accelerates the CS-based reconstruction by using a fast pseudopolar Fourier based Radon transform and rebinning the diverging fan beams to parallel beams. The reconstruction process is analyzed using a maximum-a-posterior approach, which is transformed into a weighted CS problem. The weights involved in the proposed model are calculated based on the statistical characteristics of the reconstruction process, which is formulated in terms of the measurement noise and rebinning interpolation error. Therefore, the proposed method not only accelerates the reconstruction, but also removes the rebinning and interpolation errors. Simulation results are shown for phantoms and a patient. For example, a 512 × 512 Shepp-Logan phantom when reconstructed from 128 rebinned projections using a conventional CS method had 10% error, whereas with the proposed method the reconstruction error was less than 1%. Moreover, computation times of less than 30 sec were obtained using a standard desktop computer without numerical optimization.

  2. Forensic Facial Reconstruction: The Final Frontier.

    Science.gov (United States)

    Gupta, Sonia; Gupta, Vineeta; Vij, Hitesh; Vij, Ruchieka; Tyagi, Nutan

    2015-09-01

    Forensic facial reconstruction can be used to identify unknown human remains when other techniques fail. Through this article, we attempt to review the different methods of facial reconstruction reported in literature. There are several techniques of doing facial reconstruction, which vary from two dimensional drawings to three dimensional clay models. With the advancement in 3D technology, a rapid, efficient and cost effective computerized 3D forensic facial reconstruction method has been developed which has brought down the degree of error previously encountered. There are several methods of manual facial reconstruction but the combination Manchester method has been reported to be the best and most accurate method for the positive recognition of an individual. Recognition allows the involved government agencies to make a list of suspected victims'. This list can then be narrowed down and a positive identification may be given by the more conventional method of forensic medicine. Facial reconstruction allows visual identification by the individual's family and associates to become easy and more definite.

  3. Compressed Sensing, Pseudodictionary-Based, Superresolution Reconstruction

    Directory of Open Access Journals (Sweden)

    Chun-mei Li

    2016-01-01

    Full Text Available The spatial resolution of digital images is the critical factor that affects photogrammetry precision. Single-frame, superresolution, image reconstruction is a typical underdetermined, inverse problem. To solve this type of problem, a compressive, sensing, pseudodictionary-based, superresolution reconstruction method is proposed in this study. The proposed method achieves pseudodictionary learning with an available low-resolution image and uses the K-SVD algorithm, which is based on the sparse characteristics of the digital image. Then, the sparse representation coefficient of the low-resolution image is obtained by solving the norm of l0 minimization problem, and the sparse coefficient and high-resolution pseudodictionary are used to reconstruct image tiles with high resolution. Finally, single-frame-image superresolution reconstruction is achieved. The proposed method is applied to photogrammetric images, and the experimental results indicate that the proposed method effectively increase image resolution, increase image information content, and achieve superresolution reconstruction. The reconstructed results are better than those obtained from traditional interpolation methods in aspect of visual effects and quantitative indicators.

  4. UV Reconstruction Algorithm And Diurnal Cycle Variability

    Science.gov (United States)

    Curylo, Aleksander; Litynska, Zenobia; Krzyscin, Janusz; Bogdanska, Barbara

    2009-03-01

    UV reconstruction is a method of estimation of surface UV with the use of available actinometrical and aerological measurements. UV reconstruction is necessary for the study of long-term UV change. A typical series of UV measurements is not longer than 15 years, which is too short for trend estimation. The essential problem in the reconstruction algorithm is the good parameterization of clouds. In our previous algorithm we used an empirical relation between Cloud Modification Factor (CMF) in global radiation and CMF in UV. The CMF is defined as the ratio between measured and modelled irradiances. Clear sky irradiance was calculated with a solar radiative transfer model. In the proposed algorithm, the time variability of global radiation during the diurnal cycle is used as an additional source of information. For elaborating an improved reconstruction algorithm relevant data from Legionowo [52.4 N, 21.0 E, 96 m a.s.l], Poland were collected with the following instruments: NILU-UV multi channel radiometer, Kipp&Zonen pyranometer, radiosonde profiles of ozone, humidity and temperature. The proposed algorithm has been used for reconstruction of UV at four Polish sites: Mikolajki, Kolobrzeg, Warszawa-Bielany and Zakopane since the early 1960s. Krzyscin's reconstruction of total ozone has been used in the calculations.

  5. Fast implementations of reconstruction-based scatter compensation in fully 3D SPECT image reconstruction

    International Nuclear Information System (INIS)

    Kadrmas, Dan J.; Karimi, Seemeen S.; Frey, Eric C.; Tsui, Benjamin M.W.

    1998-01-01

    Accurate scatter compensation in SPECT can be performed by modelling the scatter response function during the reconstruction process. This method is called reconstruction-based scatter compensation (RBSC). It has been shown that RBSC has a number of advantages over other methods of compensating for scatter, but using RBSC for fully 3D compensation has resulted in prohibitively long reconstruction times. In this work we propose two new methods that can be used in conjunction with existing methods to achieve marked reductions in RBSC reconstruction times. The first method, coarse-grid scatter modelling, significantly accelerates the scatter model by exploiting the fact that scatter is dominated by low-frequency information. The second method, intermittent RBSC, further accelerates the reconstruction process by limiting the number of iterations during which scatter is modelled. The fast implementations were evaluated using a Monte Carlo simulated experiment of the 3D MCAT phantom with 99m Tc tracer, and also using experimentally acquired data with 201 Tl tracer. Results indicated that these fast methods can reconstruct, with fully 3D compensation, images very similar to those obtained using standard RBSC methods, and in reconstruction times that are an order of magnitude shorter. Using these methods, fully 3D iterative reconstruction with RBSC can be performed well within the realm of clinically realistic times (under 10 minutes for 64x64x24 image reconstruction). (author)

  6. Connected Filtering by Reconstruction : Basis and New Advances

    NARCIS (Netherlands)

    Wilkinson, Michael H.F.

    2008-01-01

    Openings-by-reconstruction are the oldest connected filters, and indeed, reconstruction methodology lies at the heart of many connected operators such as levelings. Starting out from the basic reconstruction principle of iterated geodesic dilations, extensions such as the use of reconstruction

  7. CONNECTED FILTERING BY RECONSTRUCTION : BASIS AND NEW ADVANCES

    NARCIS (Netherlands)

    Wilkinson, Michael H. F.

    2008-01-01

    Openings-by-reconstruction are the oldest connected filters, and indeed, reconstruction methodology lies at the heart of many connected operators such as levelings. Starting out from the basic reconstruction principle of iterated geodesic dilations, extensions such as the use of reconstruction

  8. Investigation of various reconstruction parameters for algebraic reconstruction technique in a newly developed chest digital tomosynthesis

    International Nuclear Information System (INIS)

    Lee, H.; Choi, S.; Kim, Y.-S.; Park, H.-S.; Seo, C.-W.; Kim, H.-J.; Lee, D.; Lee, Y.

    2017-01-01

    Chest digital tomosynthesis (CDT) is a promising new modality that provides 3D information by reconstructing limited projection views. CDT systems have been developed to improve the limitations of conventional radiography such as image degradation and low sensitivity. However, the development of reconstruction methods is challenging because of the limited projection views within various angular ranges. Optimization of reconstruction parameters for various reconsturction methods in CDT system also is needed. The purpose of this study was to investigate the feasibility of algebraic reconstruction technique (ART) method, and to evaluate the effect of the reconstruction parameters for our newly developed CDT system. We designed ART method with 41 projection views over an angular range of ±20°. To investigate the effect of reconstruction parameters, we measured the contrast-to-noise ratio (CNR), artifact spread function (ASF), and quality factor (QF) using LUNGMAN phantom included tumors. We found that the proper choice of reconstruction parameters such as relaxation parameter, initial guess, and number of iterations improved the quality of reconstructed images from the same projection views. Optimal values of ART relaxation parameter with uniform (UI) and back-projection (BP) initial guesses were 0.4 and 0.6, respectively. BP initial guess improved image quality in comparison with UI initial guess, in terms of providing a higher CNR and QF values with a faster speed. CNR and QF values improved with increasing number of iteration. Particularly, ART method with BP initial guess (when β = 0.6) after 3-terations provide satisfactory reconstructed image. In conclusion, the use of ART method with proper reconstruction parameters provided better image quality than FBP method as well as conventional radiography. These results indicated that the ART method with optimal reconstruction parameters could improve image quality for nodule detection using the CDT system.

  9. Investigation of various reconstruction parameters for algebraic reconstruction technique in a newly developed chest digital tomosynthesis

    Science.gov (United States)

    Lee, H.; Choi, S.; Lee, D.; Kim, Y.-s.; Park, H.-S.; Lee, Y.; Seo, C.-W.; Kim, H.-J.

    2017-08-01

    Chest digital tomosynthesis (CDT) is a promising new modality that provides 3D information by reconstructing limited projection views. CDT systems have been developed to improve the limitations of conventional radiography such as image degradation and low sensitivity. However, the development of reconstruction methods is challenging because of the limited projection views within various angular ranges. Optimization of reconstruction parameters for various reconsturction methods in CDT system also is needed. The purpose of this study was to investigate the feasibility of algebraic reconstruction technique (ART) method, and to evaluate the effect of the reconstruction parameters for our newly developed CDT system. We designed ART method with 41 projection views over an angular range of ±20°. To investigate the effect of reconstruction parameters, we measured the contrast-to-noise ratio (CNR), artifact spread function (ASF), and quality factor (QF) using LUNGMAN phantom included tumors. We found that the proper choice of reconstruction parameters such as relaxation parameter, initial guess, and number of iterations improved the quality of reconstructed images from the same projection views. Optimal values of ART relaxation parameter with uniform (UI) and back-projection (BP) initial guesses were 0.4 and 0.6, respectively. BP initial guess improved image quality in comparison with UI initial guess, in terms of providing a higher CNR and QF values with a faster speed. CNR and QF values improved with increasing number of iteration. Particularly, ART method with BP initial guess (when β = 0.6) after 3-terations provide satisfactory reconstructed image. In conclusion, the use of ART method with proper reconstruction parameters provided better image quality than FBP method as well as conventional radiography. These results indicated that the ART method with optimal reconstruction parameters could improve image quality for nodule detection using the CDT system.

  10. Ocular Surface Reconstruction: Recent Innovations

    Directory of Open Access Journals (Sweden)

    Madhavan HN

    2009-01-01

    protocol of LSCD patients. Autologous limbal transplantation Despite its success, its utility is limited. the requirement for a sizable limbal donation; up to 30-40% must be harvested from the contralateral donor eye and its harvest may theoretically harm the structural integrity, cause subclinical LSCD or cryptogenic changes in the donor eye. Ex vivo expansion and cultivation techniques for autologous limbal stem cells are being actively investigated. , the use of human AM for ocular surface regeneration (OSR and as a growth support substrate for ex vivo expansion of autologous corneal equivalent epithelial cells and their successful OSR in animal cornea model, as well as human, was reported. The conventional cultivation methods for corneal epithelial tissues for clinical transplantation applications involve utilization of xenobiotic materials such as fetal bovine serum (FBS and murine-derived feeder cells. FBS-free culture systems have been developed to reduce the risk of zoonotic infection, but these have the disadvantage of reduced efficacy for cell propagation. it must be emphasized that AMT is not a substitution for LSCT and AMT should not be performed when true LSCD exists because AM only provides a supportive matrix for the limbal stem cells to migrate, proliferate and restore the corneal surface. There are several disadvantages of AMT and LSCT technique. This delicate procedure requires technical skill for the preparation of AM with attached corneal epithelial cells and surgical dexterity to manipulate the AM onto the ocular surface.A rabbit model for transplantation of cultivated corneal limbal stem cells onto corneal stem cell deficient animals was developed & its results are very encouraging for similar studies in human corneal surface reconstruction. Our investigations indicated that Ex vivo cultivation of human corneal limbal stem cells (HCLSC occurred with ease in the thermoresponsive biodegradable gel - “Mebiol Gel”. The growth rate within Mebiol Gel

  11. Observation of Pt-{100}-p(2×2-O reconstruction by an environmental TEM

    Directory of Open Access Journals (Sweden)

    Hengbo Li

    2016-06-01

    Full Text Available The surface structure of noble metal nanoparticles usually plays a crucial role during the catalytic process in the fields of energy and environment. It has been studied extensively by surface analytic methods, such as scanning tunneling microscopy. However, it is still challenging to secure a direct observation of the structural evolution of surfaces of nanocatalysts in reaction (gas and heating conditions at the atomic scale. Here we report an in-situ observation of atomic reconstruction on Pt {100} surfaces exposed to oxygen in an environmental transmission electron microscope (TEM. Our high-resolution TEM images revealed that Pt-{100}-p(2×2-O reconstruction occurs during the reaction between oxygen atoms and {100} facets. A reconstruction model was proposed, and TEM images simulated according to this model with different defocus values match the experimental results well.

  12. Rehanging Reynolds at the British Institution: Methods for Reconstructing Ephemeral Displays

    Directory of Open Access Journals (Sweden)

    Catherine Roach

    2016-11-01

    Full Text Available Reconstructions of historic exhibitions made with current technologies can present beguiling illusions, but they also put us in danger of recreating the past in our own image. This article and the accompanying reconstruction explore methods for representing lost displays, with an emphasis on visualizing uncertainty, illuminating process, and understanding the mediated nature of period images. These issues are highlighted in a partial recreation of a loan show held at the British Institution, London, in 1823, which featured the works of Sir Joshua Reynolds alongside continental old masters. This recreation demonstrates how speculative reconstructions can nonetheless shed light on ephemeral displays, revealing powerful visual and conceptual dialogues that took place on the crowded walls of nineteenth-century exhibitions.

  13. Summer drought reconstruction in northeastern Spain inferred from a tree ring latewood network since 1734

    Science.gov (United States)

    Tejedor, E.; Saz, M. A.; Esper, J.; Cuadrat, J. M.; de Luis, M.

    2017-08-01

    Drought recurrence in the Mediterranean is regarded as a fundamental factor for socioeconomic development and the resilience of natural systems in context of global change. However, knowledge of past droughts has been hampered by the absence of high-resolution proxies. We present a drought reconstruction for the northeast of the Iberian Peninsula based on a new dendrochronology network considering the Standardized Evapotranspiration Precipitation Index (SPEI). A total of 774 latewood width series from 387 trees of P. sylvestris and P. uncinata was combined in an interregional chronology. The new chronology, calibrated against gridded climate data, reveals a robust relationship with the SPEI representing drought conditions of July and August. We developed a summer drought reconstruction for the period 1734-2013 representative for the northeastern and central Iberian Peninsula. We identified 16 extremely dry and 17 extremely wet summers and four decadal scale dry and wet periods, including 2003-2013 as the driest episode of the reconstruction.

  14. Wavefront reconstruction in digital off-axis holography via sparse coding of amplitude and absolute phase.

    Science.gov (United States)

    Katkovnik, V; Shevkunov, I A; Petrov, N V; Egiazarian, K

    2015-05-15

    This work presents the new method for wavefront reconstruction from a digital hologram recorded in off-axis configuration. The main feature of the proposed algorithm is a good ability for noise filtration due to the original formulation of the problem taking into account the presence of noise in the recorded intensity distribution and the sparse phase and amplitude reconstruction approach with the data-adaptive block-matching 3D technique. Basically, the sparsity assumes that low dimensional models can be used for phase and amplitude approximations. This low dimensionality enables strong suppression of noisy components and accurate revealing of the main features of the signals of interest. The principal point is that dictionaries of these sparse models are not known in advance and reconstructed from given noisy observations in a multiobjective optimization procedure. We show experimental results demonstrating the effectiveness of our approach.

  15. Shaping the breast in secondary microsurgical breast reconstruction: single- vs. two-esthetic unit reconstruction.

    Science.gov (United States)

    Gravvanis, Andreas; Smith, Roger W

    2010-10-01

    The esthetic outcome is dictated essentially not only by the position, size, and shape of the reconstructed breast, but also by the extra scaring involved. In the present study, we conducted a visual analog scale survey to compare the esthetic outcome in delayed autologous breast reconstruction following two different abdominal flaps inset. Twenty-five patients had their reconstruction using the Single-esthetic Unit principle and were compared with 25 patients that their breast was reconstructed using the Two-Esthetic Unit principle. Photographic images were formulated to a PowerPoint presentation and cosmetic outcomes were assessed from 30 physicians, by means of a Questionnaire and a visual analog scale. Our data showed that the single-esthetic unit breast reconstruction presents significant advantages over the traditional two-esthetic units, due to inconspicuous flap reconstruction, better position of the inframammary fold, and more natural transition from native and reconstructed tissues. Moreover, patient self-evaluation of esthetic outcome and quality of life showed that single-esthetic unit reconstruction is associated with higher patient satisfaction, therefore should be considered the method of choice. © 2010 Wiley-Liss, Inc.

  16. Controversies in orbital reconstruction-III. Biomaterials for orbital reconstruction : a review with clinical recommendations

    NARCIS (Netherlands)

    Dubois, L.; Steenen, S. A.; Gooris, P. J. J.; Bos, R. R. M.; Becking, A. G.

    The goal of orbital reconstruction is to repair trauma defects, to correct the position of the eye anatomically, avoiding enophthalmos, and to restore ocular function. For the reconstruction of (trauma) defects, many surgeons recommend materials that can be bent into an anatomical shape and that

  17. Reconstruction of a ring applicator using CT imaging: impact of the reconstruction method and applicator orientation

    DEFF Research Database (Denmark)

    Hellebust, Taran Paulsen; Tanderup, Kari; Bergstrand, Eva Stabell

    2007-01-01

    in multiplanar reconstructed images (MPR) and (3) library plans, using pre-defined applicator geometry (LIB). The doses to the lead pellets were calculated. The relative standard deviation (SD) for all reconstruction methods was less than 3.7% in the dose points. The relative SD for the LIB method...

  18. No economic benefit of early knee reconstruction over optional delayed reconstruction for ACL tears

    DEFF Research Database (Denmark)

    Kiadaliri, Aliasghar A; Englund, Martin; Stefan Lohmander, L.

    2016-01-01

    Background To analyse 5-year cost-effectiveness of early versus optional delayed acute anterior cruciate ligament (ACL) reconstruction. Methods 121 young, active adults with acute ACL injury to a previously uninjured knee were randomised to early ACL reconstruction (n=62, within 10 weeks of injur...

  19. Reconstruction of a ring applicator using CT imaging: impact of the reconstruction method and applicator orientation

    International Nuclear Information System (INIS)

    Hellebust, Taran Paulsen; Tanderup, Kari; Bergstrand, Eva Stabell; Knutsen, Bjoern Helge; Roeislien, Jo; Olsen, Dag Rune

    2007-01-01

    The purpose of this study is to investigate whether the method of applicator reconstruction and/or the applicator orientation influence the dose calculation to points around the applicator for brachytherapy of cervical cancer with CT-based treatment planning. A phantom, containing a fixed ring applicator set and six lead pellets representing dose points, was used. The phantom was CT scanned with the ring applicator at four different angles related to the image plane. In each scan the applicator was reconstructed by three methods: (1) direct reconstruction in each image (DR) (2) reconstruction in multiplanar reconstructed images (MPR) and (3) library plans, using pre-defined applicator geometry (LIB). The doses to the lead pellets were calculated. The relative standard deviation (SD) for all reconstruction methods was less than 3.7% in the dose points. The relative SD for the LIB method was significantly lower (p < 0.05) than for the DR and MPR methods for all but two points. All applicator orientations had similar dose calculation reproducibility. Using library plans for applicator reconstruction gives the most reproducible dose calculation. However, with restrictive guidelines for applicator reconstruction the uncertainties for all methods are low compared to other factors influencing the accuracy of brachytherapy

  20. Data-parallel tomographic reconstruction : A comparison of filtered backprojection and direct Fourier reconstruction

    NARCIS (Netherlands)

    Roerdink, J.B.T.M.; Westenberg, M.A

    1998-01-01

    We consider the parallelization of two standard 2D reconstruction algorithms, filtered backprojection and direct Fourier reconstruction, using the data-parallel programming style. The algorithms are implemented on a Connection Machine CM-5 with 16 processors and a peak performance of 2 Gflop/s.