Sample records for paleoenvironmental reconstructions revealed
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Paleo-Environmental Reconstruction Using Ancient DNA
DEFF Research Database (Denmark)
Pedersen, Mikkel Winther
The aim of this thesis has been to investigate and expand the methodology and applicability for using ancient DNA deposited in lake sediments to detect and determine its genetic sources for paleo-environmental reconstruction. The aim was furthermore to put this tool into an applicable context...... solving other scientifically interesting questions. Still in its childhood, ancient environmental DNA research has a large potential for still developing, improving and discovering its possibilities and limitations in different environments and for identifying various organisms, both in terms...... research on ancient and modern environmental DNA (Paper 1), secondly by setting up a comparative study (Paper 2) to investigate how an ancient plant DNA (mini)-barcode can reflect other traditional methods (e.g. pollen and macrofossils) for reconstructing floristic history. In prolongation of the results...
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The PRISM3D paleoenvironmental reconstruction
Dowsett, H.; Robinson, M.; Haywood, A.M.; Salzmann, U.; Hill, Daniel; Sohl, L.E.; Chandler, M.; Williams, Mark; Foley, K.; Stoll, D.K.
2010-01-01
The Pliocene Research, Interpretation and Synoptic Mapping (PRISM) paleoenvironmental reconstruction is an internally consistent and comprehensive global synthesis of a past interval of relatively warm and stable climate. It is regularly used in model studies that aim to better understand Pliocene climate, to improve model performance in future climate scenarios, and to distinguish model-dependent climate effects. The PRISM reconstruction is constantly evolving in order to incorporate additional geographic sites and environmental parameters, and is continuously refined by independent research findings. The new PRISM three dimensional (3D) reconstruction differs from previous PRISM reconstructions in that it includes a subsurface ocean temperature reconstruction, integrates geochemical sea surface temperature proxies to supplement the faunal-based temperature estimates, and uses numerical models for the first time to augment fossil data. Here we describe the components of PRISM3D and describe new findings specific to the new reconstruction. Highlights of the new PRISM3D reconstruction include removal of Hudson Bay and the Great Lakes and creation of open waterways in locations where the current bedrock elevation is less than 25m above modern sea level, due to the removal of the West Antarctic Ice Sheet and the reduction of the East Antarctic Ice Sheet. The mid-Piacenzian oceans were characterized by a reduced east-west temperature gradient in the equatorial Pacific, but PRISM3D data do not imply permanent El Niño conditions. The reduced equator-to-pole temperature gradient that characterized previous PRISM reconstructions is supported by significant displacement of vegetation belts toward the poles, is extended into the Arctic Ocean, and is confirmed by multiple proxies in PRISM3D. Arctic warmth coupled with increased dryness suggests the formation of warm and salty paleo North Atlantic Deep Water (NADW) and a more vigorous thermohaline circulation system that may
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International Nuclear Information System (INIS)
Del Puerto, L.; Bracco, R.; Inda, H.; Garcia, F.; Panario, D.; Castineira, C.; Capdepont, I.
2012-01-01
This work is about the study carried out within the framework of the environmental evolution and the prehistoric human occupation on coastal lagoons in the east of Uruguay. The analysis of the sediments in the zone enable the reconstruction of the Holocene climate history as well as the construction of the Paleoclimatic and paleoenvironmental model belong to the middle and late Holocene
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Energy Technology Data Exchange (ETDEWEB)
Joynt, E. H. III; Wolfe, A. P. [Colorado Univ., Inst. of Arctic and Alpine Research, Boulder, CO (United States)
2001-06-01
Lake sediments are attractive repositories for paleoclimate proxy data because they are temporally continuous, undisturbed and datable. It is particularly true of lakes which are ubiquitous throughout the Arctic regions, enabling dense spatial coverage of sampling sites. In more recent times diatoms have been applied to a a variety of paleoenvironmental questions. However, these studies have been of limited usefulness because they lack a regional training set that would facilitate making quantitative paleoenvironmental inferences. This article provides this inferential tool, together with an example of its application. Conductivity, pH, summer lake water temperature, and mean annual air temperature have been identified as the significant controls over diatom assemblages from the surface sediments of 61 lakes on Baffin Island. Using weighted-averaging regression and calibration, predictive models for these parameters have been developed. Results show that the summer lake water temperature model provides realistic reconstructions when compared with other paleoenvironmental records. Over the past 5000 years the amplitude of reconstructed summer lake water temperature was found to be on the order of 4 degrees C, expressed primarily as progressive neoglacial cooling culminating in the Little Ice Age. Diatom-inferred summer water temperatures have increased by about 2 degrees C in the past 150 years, which is also in agreement with independent paleoclimatic reconstructions. The data obtained in this study complements similar efforts from the western Canadian Arctic and the northern reaches of Scandinavia, however, this is the first training set developed for lakes situated entirely north of the tree line. As such, it extends the applicability of diatoms for paleotemperature reconstructions well into the Arctic tundra biome. 45 refs., 1 tab., 10 figs., 1 appendix.
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DEFF Research Database (Denmark)
Vimeux, F.; de Angelis, M.; Ginot, P.
2008-01-01
temperature is -11.9°C at 10-m depth allowing to expect well preserved both chemical and isotopic signals, unperturbed by water percolation. The dating of the core, on the basis of a multi-proxy approach combining annual layer counting and radionuclide measurements, shows that past environment and climate can......The study of past climate variability from ice core investigations has been largely developed both in polar areas over the past decades and, more recently, in tropical regions, specifically along the South American Andes between 0° and 20°S. However a large gap still remains at mid......-latitudes in the Southern Hemisphere. In this framework, a 15.3-m long shallow firn core has been extracted in March 2005 from the summit plateau of Monte San Valentín (3747 m, 46°35'S, 73°19'W) in the Northern Patagonia Icefield to test its potential for paleoclimate and paleoenvironmental reconstructions. The firn...
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Rubert, Rogerio R.; Mizusaki, Ana Maria Pimentel; Martinelli, Agustín G.; Urban, Camile
2017-12-01
The Cretaceous in the Brazilian Platform records events of magmatism, tectonism and sedimentation coupled to the Gondwana breakup. Some of these events are registered as sedimentary sequences in interior basins, such as in the Cretaceous sequence of the Alto Xingu Sub-basin, Parecis Basin, Central Brazil. This article proposes the faciologic characterization and paleoenvironmental reconstruction of the Cretaceous sequence of the eastern portion of the Parecis Basin and its relation with some reactivated structures as, for instance, the Serra Formosa Arch. Based on both data from outcrops and core drillings a paleoenvironmental and evolutionary reconstruction of the sequence is herein presented. The base of the studied section is characterized by chemical and low energy clastic sedimentation of Lake Bottom and Shoreline, in a context of fast initial subsidence and low sedimentation rate. As the subsidence process decreased, a deltaic progradation became dominant with deposition in a prodelta environment, followed by a deltaic front and deltaic plain interbedded with fluvial plain, and aeolian deposition completing the sequence. The inferred Coniacian-Santonian age is based on vertebrate (fishes and notosuchians) and ostracod fossils with regional chrono-correlates in the Adamantina (Bauru Group), Capacete (Sanfranciscana Basin), and Bajo de la Carpa (Neuquén Group, in Argentina) formations. The formation of a Coniacian depocenter in the Alto Xingu Sub-basin is associated to the Turonian-Coniacian reactivation event in the Peruvian Orogenic Phase of the Andean Orogeny, with the transference of stresses to interplate setting, reactivating Proterozoic structures of the basement.
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Dynamics of living phytoplankton: Implications for paleoenvironmental reconstructions
Energy Technology Data Exchange (ETDEWEB)
Barbosa, A B [Centre for Marine and Environmental Research (CIMA), Universidade do Algarve, Campus de Gambelas, 8005-139 Faro (Portugal)], E-mail: abarbosa@ualg.pt
2009-01-01
Phytoplankton is the dominant primary producer in aquatic ecosystems and is considered a gauge of ecological condition and change. Some phytoplankton groups, namely diatoms, dinoflagellates, and coccolithophores, produce morphological or chemical fossils that can be used for paleoenvironmental reconstruction. This study aims to review the processes that regulate dynamics in living phytoplankton and to highlight how this knowledge is used in paleoecological studies. The distribution patterns of phytoplankton in present-day aquatic ecosystems are shaped by the interplay between processes that regulate cell growth and cell death. Cell growth and cell death are regulated by the internal environment of phytoplankton (e.g., specific environmental tolerances, resource uptake properties, cell size, density and morphology, alternative nutritional strategies such as mixotrophy or N{sub 2} uptake, motility, intracellular storage capacities, grazing resistance properties), and by its external environment. The external environment includes variables dependent on the availability of resources (e.g., light intensity, concentration of CO{sub 2} and dissolved inorganic macronutrients and micronutrients, availability of living prey in case of mixotrophs) and variables independent of resources (e.g., temperature, salinity, turbulence, ultraviolet radiation, bioactive compounds, activity of grazers, viruses, and eukaryotic parasites). The importance of recently described loss processes, such as grazing by phagotrophic protists, viral lyses, and programmed cell death, is discussed in the context of its potential impact upon phytoplankton vertical fluxes. Examples of the use of different phytoplankton metrics (e.g. abundance, species composition, species morphology, and elemental composition) to infer contemporaneous as well as past environmental and ecological conditions are critically evaluated.
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Dynamics of living phytoplankton: Implications for paleoenvironmental reconstructions
International Nuclear Information System (INIS)
Barbosa, A B
2009-01-01
Phytoplankton is the dominant primary producer in aquatic ecosystems and is considered a gauge of ecological condition and change. Some phytoplankton groups, namely diatoms, dinoflagellates, and coccolithophores, produce morphological or chemical fossils that can be used for paleoenvironmental reconstruction. This study aims to review the processes that regulate dynamics in living phytoplankton and to highlight how this knowledge is used in paleoecological studies. The distribution patterns of phytoplankton in present-day aquatic ecosystems are shaped by the interplay between processes that regulate cell growth and cell death. Cell growth and cell death are regulated by the internal environment of phytoplankton (e.g., specific environmental tolerances, resource uptake properties, cell size, density and morphology, alternative nutritional strategies such as mixotrophy or N 2 uptake, motility, intracellular storage capacities, grazing resistance properties), and by its external environment. The external environment includes variables dependent on the availability of resources (e.g., light intensity, concentration of CO 2 and dissolved inorganic macronutrients and micronutrients, availability of living prey in case of mixotrophs) and variables independent of resources (e.g., temperature, salinity, turbulence, ultraviolet radiation, bioactive compounds, activity of grazers, viruses, and eukaryotic parasites). The importance of recently described loss processes, such as grazing by phagotrophic protists, viral lyses, and programmed cell death, is discussed in the context of its potential impact upon phytoplankton vertical fluxes. Examples of the use of different phytoplankton metrics (e.g. abundance, species composition, species morphology, and elemental composition) to infer contemporaneous as well as past environmental and ecological conditions are critically evaluated.
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Directory of Open Access Journals (Sweden)
Mauro B. de Toledo
2009-12-01
Full Text Available Despite the indisputable significance of identification of modern analogs for Paleoecology research, relatively few studies attempted to integrate modern and fossil samples on paleoenvironmental reconstructions. In Palynology, this general pattern is not different from other fields of Paleoecology. This study demonstrates the practical application of modern pollen deposition data on paleoenvironmental reconstructions based on fossil pollen by using multivariate analysis. The main goal of this study was to use Detrended Correspondence Analysis (DCA to compare pollen samples from two sediment cores collected at Lagoa Salgada, a coastal lagoon located at northeastern Rio de Janeiro State. Furthermore, modern surface samples were also statistically compared with samples from both cores, providing new paleoecological insights. DCA demonstrated that samples from both cores are more similar than previously expected, and that a strong pattern, related to a paleoenvironmental event, is present within the fossil data, clearly identifying in the scatter plot samples that represent pre- and post-environmental change. Additionally, it became apparent that modern vegetation and environmental conditions were established in this region 2500 years before present (BP. Multivariate Analysis allowed a more reliable integration of modern and fossil pollen data, proving to be a powerful tool in Paleoecology studies that should be employed more often on paleoclimate and paleoenvironmental reconstructions.Apesar da indiscutível importância da identificação de análogos modernos para estudos de Paleoecologia, relativamente poucos estudos procuraram integrar amostras modernas e fósseis em reconstruções paleoambientais. Na Palinologia este padrão não é diferente de outras áreas da Paleoecologia. Este estudo demonstra a aplicação prática de dados de deposição polínica atual em reconstruções paleoambientais baseadas em pólen fóssil utilizando an
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Rissolo, D.; Jaijel, R.; Glover, J. B.; Goodman, B.; Beddows, P. A.; Carter, A.; Smith, D.
2013-12-01
Ancient Maya ports along the largely unstudied northeast coast of the Yucatan Peninsula once supported a network of trade routes linking people, goods, and ideas from across Mesoamerica. The Costa Escondida Project has focused on the interrelationships between the ancient Maya and their dynamic coastal environment along the shores of the Laguna Holbox. Central to our interdisciplinary efforts is a paleoenvironmental and paleoecological reconstruction of the key port of Vista Alegre - a low-lying island surrounded by a complex mosaic of costal ecosystems, sedimentological facies, and hydrological conditions. Geoarchaeological field methods, such as sediment coring, have made possible multiproxy analyses that enable us to better understand sea level fluctuations and the morphology of the shoreline and harboring locations over time, as well as changes in ecosystem biodiversity, which would have presented the maritime Maya with unique challenges and opportunities.
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Vogel, Sebastian; Märker, Michael
2010-05-01
SSP1.4 Understanding mixed siliciclastic-volcaniclastic depositional systems and their relationships with geodynamics or GD2.3/CL4.14/GM5.8/MPRG22/SSP3.5 Reconstruction of ancient continents: Dating and characterization of paleosurfaces Reconstructing the paleo-topography and paleo-environmental features of the Sarno River plain (Italy) before the AD 79 eruption of Somma-Vesuvius volcanic complex Sebastian Vogel[1] & Michael Märker[1] [1] Heidelberg Academy of Sciences and Humanities c/o University of Tübingen, Rümelinstraße 19-23, D-72070 Tübingen, Germany. Within the geoarchaeological research project "Reconstruction of the Ancient Cultural Landscape of the Sarno River Plain" undertaken by the German Archaeological Institute in cooperation with the Heidelberg Academy of Sciences and Humanities/University of Tübingen a methodology was developed to model the spatial dispersion of volcanic deposits of Somma-Vesuvius volcanic complex since its Plinian eruption AD 79. Eventually, this was done to reconstruct the paleo-topography and paleo-environment of the Sarno River plain before the eruption AD 79. We collected, localized and digitized more than 1,800 core drillings to gain a representative network of stratigraphical information covering the entire plain. Besides other stratigraphical data including the characteristics of the pre-AD 79 stratum, the depth to the pre-AD 79 paleo-surface was identified from the available drilling documentation. Instead of applying a simple interpolation of the drilling data, we reconstructed the pre-AD 79 paleo-surface with a sophisticated geostatistical methodology using a machine based learning approach based on classification and regression trees. We hypothesize that the present-day topography reflects the ancient topography, because the eruption of AD 79 coated the ancient topography, leaving ancient physiographic elements of the Sarno River plain still recognizable in the present-day topography. Therefore, a high resolution
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Aramayo, S. A.; Téllez, B. Gutiérrez; Schillizzi, R. A.
2005-10-01
A paleoenvironmental reconstruction of the southeast coast of Buenos Aires province, Argentina, is made mainly on the basis of paleontological and paleoichnological studies, supported by sedimentological analyses and radiocarbon dating. Continental late Pleistocene and continental, transitional, and marine Holocene stratigraphic units are identified. The former comprises fossil mammals and ichnites of 16000-12,000 BP. The continental early Holocene time, ca. 8100 BP, is represented by an interdune paleoenvironment in which shallow brackish ponds were colonized by diatoms, fish, rodents, and birds. A transitional paleoenvironment in the middle Holocene—6930-6570 BP—is recorded by deposits formed by estuarine crabs. During the late Holocene, between 5000 and 4800 BP, a marine transgression was recorded by a rich mollusc fauna.
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Mahoney, C.; März, C.; Wagner, T.
2016-12-01
It is well known that for geochemical studies on ancient rocks, outcrop samples can be compromised by present-day weathering. This raises the fundamental question, if only outcrop samples are available, how reliable can paleoenvironmental reconstructions be? To answer this question, shale samples have been gathered from Cretaceous outcrops of the Eastern Cordillera of Colombia, and analysed by XRF and Fe speciation in order to investigate paleo-redox conditions in this margin basin of the Proto-Atlantic. The samples are consistently depleted (relative to average shale) in redox-related trace metals and in total Fe indicating oxic conditions, whereas Fe speciation (highly reactive over total Fe) indicates anoxic conditions. We ask if this depletion in trace metals and total Fe is due to a lack of primary supply from the depositional environment, or if is it caused by modern oxidative outcrop weathering in this tropical mountainous setting? Our results from artificial weathering experiments confirm that certain trace metals U, Zn and Mo are easily leached from the samples, whereas Fe is quantitatively retained in the samples due to conversion of pyrite and siderite to Fe oxides. Pristine samples from wells in the adjacent Middle Magdalena Valley Basin (MMV) also exhibit total Fe depletion, but are up to 2000-fold enriched in Mo. This combined evidence indicates that the depletion of trace metals may be due to contemporary weathering, but there has to be a paleoenvironmental reason behind the low total Fe signature. The Guiana Shield was the probable source of sediment to the Cretaceous basin. The Chemical Index of Alteration suggest the source of detrital material was initially highly weathered (average 83, maximum 95). Ancient laterites have been identified on the Guiana Shield, and retention of Fe in these laterites may explain the low Fe input into the Eastern Cordillera basin. These results confirm that trace metal-based redox proxies may be seriously affected by
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Energy Technology Data Exchange (ETDEWEB)
Omidvar, M.; Safari, A.; Vaziri-Moghaddam, H.; Ghalavand, H.
2016-07-01
Upper Cretaceous mixed carbonate-siliciclastic sequences are among the most important targets for hydrocarbon exploration in the Moghan area, located in the eastern Para-Tethys Basin. Despite of their significance, little is known about their facies characteristics and depositional environments. Detailed facies analysis and paleoenvironmental reconstruction of these sequences have been carried out in eight surface sections. Accordingly, four siliciclastic facies, eight carbonate facies and one volcanic facies have been recognized. Detailed facies descriptions and interpretations, together with the results of facies frequency analysis, standard facies models and Upper Cretaceous depositional models of Para-Tethys Basin, have been integrated and a non-rimmed carbonate platform is presented. This platform was affected by siliciclastic influx, in the form of coastal fan delta and submarine fans in the shallow- to deep-marine parts, respectively. This model is interpreted to be shallower in the central and northeastern parts of the Moghan area. Toward the southeast and southwest, this shallow platform turns into deep marine settings along steep slopes without remarkable marginal barriers. (Author)
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Directory of Open Access Journals (Sweden)
Amanda L. D. Bender
2017-06-01
Full Text Available Leaf wax n-alkanes are broadly used to reconstruct paleoenvironmental information. However, the utility of n-alkanes as a paleoenvironmental proxy may be modulated by the extent to which biological as well as environmental factors influence the structural and isotopic variability of leaf waxes. In paleoclimate applications, there is usually an implicit assumption that most variation of leaf wax traits through a time series can be attributed to environmental change and that biological sources of variability within plant communities are small. For example, changes in hydrology affect the δ2H of waxes via rainwater and the δ13C of leaf waxes by changing plant communities. We measured the degree of genetic control over δ13C variation in leaf waxes within closely related species with an experimental greenhouse growth study. We measured the proportion of variability in structural and isotopic leaf wax traits that is attributable to genetic variation using a set of 76 introgression lines (ILs between two interfertile Solanum (tomato species: S. lycopersicum cv M82 (hereafter cv M82 and S. pennellii. Leaves of S. pennellii, a wild desert tomato relative, produced significantly more iso-alkanes than cv M82, a domesticated tomato cultivar adapted to water-replete conditions. We report a methylation index to summarize the ratio of branched (iso- and anteiso- to total alkanes. Between Solanum pennellii and cv M82, the iso-alkanes were found to be enriched in 13C by 1.2–1.4‰ over n-alkanes. The broad-sense heritability values (H2 of leaf wax traits describe the degree to which genetic variation contributes to variation of these traits. Variation of individual carbon isotopic compositions of alkanes were of low heritability (H2 = 0.13–0.19, suggesting that most variation in δ13C of leaf waxes in this study can be attributed to environmental variance. This supports the interpretation that variation in the δ13C of wax compounds recorded in sediments
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Bender, Amanda L. D.; Chitwood, Daniel H.; Bradley, Alexander S.
2017-06-01
Leaf wax n-alkanes are broadly used to reconstruct paleoenvironmental information. However, the utility of n-alkanes as a paleoenvironmental proxy may be modulated by the extent to which biological as well as environmental factors influence the structural and isotopic variability of leaf waxes. In paleoclimate applications, there is usually an implicit assumption that most variation of leaf wax traits through a time series can be attributed to environmental change and that biological sources of variability within plant communities are small. For example, changes in hydrology affect the δ2H of waxes via rainwater and the δ13C of leaf waxes by changing plant communities. We measured the degree of genetic control over δ13C variation in leaf waxes within closely related species with an experimental greenhouse growth study. We measured the proportion of variability in structural and isotopic leaf wax traits that is attributable to genetic variation using a set of 76 introgression lines (ILs) between two interfertile Solanum (tomato) species: S. lycopersicum cv M82 (hereafter cv M82) and S. pennellii. Leaves of S. pennellii, a wild desert tomato relative, produced significantly more iso-alkanes than cv M82, a domesticated tomato cultivar adapted to water-replete conditions. We report a methylation index to summarize the ratio of branched (iso- and anteiso-) to total alkanes. Between S. pennellii and cv M82, the iso-alkanes were found to be enriched in 13C by 1.2-1.4‰ over n-alkanes. The broad-sense heritability values (H2) of leaf wax traits describe the degree to which genetic variation contributes to variation of these traits. Variation of individual carbon isotopic compositions of alkanes were of low heritability (H2 = 0.13-0.19), suggesting that most variation in δ13C of leaf waxes in this study can be attributed to environmental variance. This supports the interpretation that variation in the δ13C of wax compounds recorded in sediments reflects
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PaleoGeo: a Web based GIS database for paleoenvironmental studies
Song, Wonsuh; Kondo, Yasuhisa; Oguchi, Takashi
2014-05-01
Paleoenvironmental studies cover various fields such as paleohydrology, geomorphology, paleooceanology, paleobiology, paleoclimatology, and chronology. It is difficult for an individual researcher to collect and compile enormous data regarding these fields. We have been compiling portal data and presenting them using a web-based geographical information system (Web-GIS) called PaleoGeo for the multidisciplinary project 'Replacement of Neanderthals by Modern Humans'. The aim of the project is to reconstruct the distribution of Neanderthals and modern humans in time and space in relation to past climate change. We have been collecting information from almost three thousand articles of 13 journals regarding paleoenvironmental research (i.e., Boreas, Catena, Climatic Change, Earth Surface Processes and Landforms, Geomorphology, Journal of Quaternary Science, Palaeogeography, Palaeoclimatology, and Palaeoecology, Quaternary International, Quaternary Research, Quaternary Science Reviews, The Holocene, and The Journal of Geology). The topics of the articles were classified into six themes (paleohydrology, earth surface processes and materials, paleooceanology, paleobiology, palaeoclimatology, and chronology) and 19 subthemes (hydrology, flood, fluvial, glacier, fluvial/glacier, sedimentology, soil, slope process, periglacial, peat land, eolian, sea-level, biology, vegetation, zoology, vegetation/zoology, archaeology, climate, atmosphere, and chronology). The collected data consist of the journal name, information about each paper (authors, title, volume, year, and page numbers), site location (country name, longitude, and latitude), theme, subtheme, keywords, DOI (Digital Object Identifier), and period (era). Location data are indispensable for paleoenvironmental studies. The PaleoGeo shows information with a map, which is an advantage of this database system. However, the number of the paleoenvironmental studies is growing rapidly and we have to effectively cover them as
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Impact of prehistoric cooking practices on paleoenvironmental proxies in shell midden constituents
Müller, Peter; Staudigel, Philip; Murray, Sean T.; Westphal, Hildegard; Swart, Peter K.
2016-04-01
Paleoenvironmental proxy records such as oxygen isotopes of calcareous skeletal structures like fish otoliths or mollusk shells provide highest-resolution information about environmental conditions experienced by the organism. Accumulations of such skeletal structures by ancient coastal populations in so called "shell midden" deposits provide us with sub-seasonally resolved paleoclimate records covering time spans up to several millennia. Given their high temporal resolution, these deposits are increasingly used for paleoclimate reconstructions and complement our understanding of ancient climate changes. However, gathered as comestibles, most of these skeletal remains were subject to prehistoric cooking methods prior to deposition. The associated alteration of the chemical proxy signatures as well as the subsequent error for paleoenvironmental reconstructions remained almost entirely neglected so far. Here, we present clumped isotope, conventional oxygen and carbon isotopes as well as element:Ca ratios measured in modern bivalve shells after exposing them to different prehistoric cooking methods. Our data show that most cooking methods considerably alter commonly used paleoclimate proxy systems which can lead to substantial misinterpretations of ancient climate conditions. Since the magnitude of chemical alteration is not distinguishable from natural temperature variability in most coastal settings, the alteration of shell midden constituents by prehistoric cooking remains likely unnoticed in most cases. Thus, depending on the cooking method, pre-depositional heating might have introduced considerable errors into previous paleoclimate studies. However, our data also show that clumped isotope thermometry represents a suitable diagnostic tool to detect such pre-depositional cooking events and also allows differentiating between the most commonly applied prehistoric cooking methods.
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Paleoenvironmental conditions in the late Paleogene, Sumatra, Indonesia
O'shea, Natalie; Arthur Bettis, E.; Zaim, Yahdi; Rizal, Yan; Aswan, Aswan; Gunnell, Gregg F.; Zonneveld, John-Paul; Ciochon, Russell L.
2015-11-01
A stratified paleosol sequence exposed in an open pit mine in central Sumatra provides a record of the paleoenvironmental conditions in the lower reaches of a large river system in the late Paleogene (latest Eocene or Oligocene). Morphological, geochemical, and stable isotope data suggest that the sequence represents a mosaic of local environmental conditions changing from estuarine to riverine up section. Weakly expressed soils formed on low-lying estuary surfaces, while more well expressed soils formed on higher, better drained surfaces. Peatlands (coal) with clayey subsoils were along the estuary margins. Well-expressed soils with evidence of clay translocation and chemical weathering become more common higher in the section where alluvial deposits associated with a meandering river are dominant. Stable carbon isotope ratios support a paleolandscape dominated by C3 plants with input by C4 vegetation limited to a few intervals. Finally, whole-rock geochemistry suggests moderate chemical weathering consistent with a tropical locality. This multi-proxy paleoenvironmental reconstruction suggests a highly productive lowland forest environment at this locality in the late Paleogene and provides the first direct examination of the terrestrial environment in Sumatra at this time. The limited fossil record in Island Southeast Asia during this time period is likely a result of poor bone and shell preservation in tropical forest environments combined with a general lack of systematic prospecting. However, our continuing work in this area has produced a relatively diverse assemblage of fossil vertebrates, now including fishes, amphibians, turtles, crocodiles, and mammals, as well as a growing diversity of fossil plants.
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Paleo-environmental Reconstruction of Oligocene to Early Miocene ...
African Journals Online (AJOL)
ADOWIE PERE
province on the West African continental margin. It lies mainly in the ... basin are favorable for the generation, accumulation ... reconstruction as well as recognition of oil and gas deposits .... zone which covers from 1640ft to 11,100ft of the well.
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Great Basin paleoenvironmental studies project
International Nuclear Information System (INIS)
1993-01-01
Project goals, project tasks, progress on tasks, and problems encountered are described and discussed for each of the studies that make up the Great Basin Paleoenvironmental Studies Project for Yucca Mountain. These studies are: Paleobotany, Paleofauna, Geomorphology, and Transportation. Budget summaries are also given for each of the studies and for the overall project
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Dabaghi Sadr, Fatemeh; Schmiedl, Gerhard
2017-04-01
The Cenozoic climate transition from greenhouse to icehouse conditions was associated with major paleogeographic changes in the Tethyan realm. The closure of the Tethyan Seaway and its Iranian gateways during the terminal Paleogene and early Neogene, between approximately 28 and 18 million years, influenced the latitudinal exchange of water masses and energy and is documented in sediment successions of the Qom formation in central Iran. Little is known on the spatial expression and the exact depositional histories of the Qom Formation on orbital time-scales, including a lack of quantitative sea-level reconstructions and studies on the impact of climatic and tectonic changes on marine ecosystems and sedimentation processes. The PhD project focuses on the investigation of lithostratigraphy, biostratigraphy, paleoecology and paleoenvironmental evolution of the Iranian gateways based on late Oligocene to early Miocene foraminiferal faunas and carbonate facies from selected sediment sections of the Qom Basin. The Qom Formation was deposited in the Central Iranian back-arc basin during the Oligocene-Miocene. In this study foraminiferal faunas and carbonate microfacies were studied based on total 191 samples of two section of Qom Formation. One of them is Molkabad section, which is located northwest of Molkabad mountains, southeast of Garmsar. The section mainly consists of limestones, calcareous marls, marls, and gypsum-bearing marls with a total thickness of 760 meters. The Qom Formation at Molkabad section overlies Eocene rocks with an unconformity and consists of the following lithostratigraphic units (from the lower to upper part): Lithothamnium Limestone, Lower Marl Limestone, Bryozoa Limestone, and Upper Marl Group. The Molkabad fault separates the Qom Formation from the overlying Upper Red Formation. The other section is located at Navab anticline in Qom Formation .The section mainly consist of limestone, marl, and gypsum with a total thickness of 318 meters Navab
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Palynological and paleoenvironmental studies of the Gombe ...
African Journals Online (AJOL)
Palynological and paleoenvironmental studies of the Gombe Formation Gongola Basin, Nigeria. OJ Ojo, SO Akande. Abstract. No Abstract Available Journal of Mining and Geology Vol.40(2) 2004: 143-149. Full Text: EMAIL FULL TEXT EMAIL FULL TEXT · DOWNLOAD FULL TEXT DOWNLOAD FULL TEXT.
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Speelman, E.N.
2010-01-01
With the realization that the Arctic Ocean was covered with enormous quantities of the aquatic floating fern Azolla 49 Myrs ago, new questions regarding the Eocene conditions facilitating these blooms arose. This dissertation describes the reconstruction of paleo-environmental conditions
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Biogeochemistry of selenium isotopes: processes, cycling and paleoenvironmental applications
Mitchell, K.A.
2012-01-01
Selenium (Se) is an essential trace element, which, with multiple oxidation states and six stable isotopes, has been suggested as a potentially powerful environmental tracer and paleoenvironmental proxy. Chapter 1 provides a literature review of the Se cycle. While the Se cycle shares some
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Directory of Open Access Journals (Sweden)
Qingqing Zhang
2018-04-01
Full Text Available Background The loess-paleosol sequence on the Loess Plateau has been considered an important paleoclimatic archive to study global climatic and environmental changes in the Quaternary. So far, little attention has been paid to the characteristics of soil organic carbon fractions in loess-paleosol sequences, which may provide valuable information for exploring the evolution of climate and environment in the Quaternary on the Loess Plateau. Methods In order to explore the significance of mineral-associated organic carbon to total organic carbon (MOC/TOC ratios in the loess-paleosol sequence for reconstructing paleoenvironmental and paleoclimatic evolution in the Quaternary on the Loess Plateau, we selected a typical loess-paleosol profile in Chunhua county, Xianyang city, Shaanxi province, as the research object. The content of total organic carbon (TOC and MOC/TOC ratio in each loess and paleosol layers of the Chunhua loess-paleosol profile were analyzed, together with the paleoclimatic proxies, such as soil grain size, CaCO3 content and their correlations with organic carbon parameters. Results The main results were as follows: (1 the total content of soil organic carbon and MOC/TOC ratios were generally higher in paleosol layers than in the underlying loess layers of the Chunhua loess-paleosol profile. Compared to total organic carbon content, MOC/TOC ratios changed more obviously in soil layers below a paleosol layer S8; (2 soil clay content and median grain size (Md (ϕ were higher in paleosol than in the underlying loess, while CaCO3 content showed an opposite tendency. In the Chunhua profile, the distribution characteristics of the three paleoclimatic proxies showed good indications of paleoclimate changes in the Quaternary; (3 in the Chunhua loess-paleosol profile, MOC/TOC ratios were positively correlated with clay content and median grain size (ϕ, while negatively correlated with CaCO3 content, and the correlations were more significant
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Hu, Feinan; Huo, Na; Shang, Yingni; Chang, Wenqian
2018-01-01
Background The loess-paleosol sequence on the Loess Plateau has been considered an important paleoclimatic archive to study global climatic and environmental changes in the Quaternary. So far, little attention has been paid to the characteristics of soil organic carbon fractions in loess-paleosol sequences, which may provide valuable information for exploring the evolution of climate and environment in the Quaternary on the Loess Plateau. Methods In order to explore the significance of mineral-associated organic carbon to total organic carbon (MOC/TOC) ratios in the loess-paleosol sequence for reconstructing paleoenvironmental and paleoclimatic evolution in the Quaternary on the Loess Plateau, we selected a typical loess-paleosol profile in Chunhua county, Xianyang city, Shaanxi province, as the research object. The content of total organic carbon (TOC) and MOC/TOC ratio in each loess and paleosol layers of the Chunhua loess-paleosol profile were analyzed, together with the paleoclimatic proxies, such as soil grain size, CaCO3 content and their correlations with organic carbon parameters. Results The main results were as follows: (1) the total content of soil organic carbon and MOC/TOC ratios were generally higher in paleosol layers than in the underlying loess layers of the Chunhua loess-paleosol profile. Compared to total organic carbon content, MOC/TOC ratios changed more obviously in soil layers below a paleosol layer S8; (2) soil clay content and median grain size (Md (ϕ)) were higher in paleosol than in the underlying loess, while CaCO3 content showed an opposite tendency. In the Chunhua profile, the distribution characteristics of the three paleoclimatic proxies showed good indications of paleoclimate changes in the Quaternary; (3) in the Chunhua loess-paleosol profile, MOC/TOC ratios were positively correlated with clay content and median grain size (ϕ), while negatively correlated with CaCO3 content, and the correlations were more significant in soil
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International Nuclear Information System (INIS)
Ahmad, Khaldoun; Davies, Caroline
2017-01-01
This study examines the stable isotopes of carbon and nitrogen from cored lacustrine sediments of the Al-Azraq, an arid lake basin on the Jordan Plateau. Lacustrine sediments contain valuable records of paleoenvironmental conditions, recording local and regional responses to environmental change. Previous paleo-reconstructions on the Jordan Plateau are based on archaeology, pollen, mineralogy, and stratigraphy. The application of organic geochemistry analyses to these lake sediments identifies multiple sources of organic matter, biological production, and contributes to understanding the paleoenvironments of the Al-Azraq basin during the mid-Pleistocene period. Organic carbon concentration (Corg) provides an overview of the organic matter distribution. Carbon isotopic composition (δ13Corg) and nitrogen isotopic composition (δ15N) are indicators of organic matter sources and paleoproductivity. Magnetic susceptibility (MGSUS) measured the concentration of ferromagnetic minerals and indicated aeolian inputs. Organic geochemistry differentiated five paleoenvironmental zones with specific sources of organic matter, both aquatic and terrestrial. It identified a long period of climate wetter than the present, punctuated by a short intense period of aridity. Diagenesis plays an important role in the decomposition of organic matter and studies indicate this degradation can alter the isotopic signals of organic matter. Analyses of the isotopic signals and statistical analyses demonstrate diagenesis is not a factor in the Al-Azraq sediments in all but Zone 4 of the paleoenvironmental zones. This Zone is defined by less negative carbon isotopic composition and the presence of thick primary gypsum layers, in addition to the influx of high peaks of aeolian sediment as reflected in the magnetic susceptibility data. Stable isotope geochemistry provides detailed information on the paleoenvironments of lake sediments, and is applicable to typically challenging arid basin sediments
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Paleoenvironmental conditions at the loess paleosol sequence Bodrogkeresztúr in NE Hungary
Bösken, Janina; Obreht, Igor; Zeeden, Christian; Klasen, Nicole; Hambach, Ulrich; Sümegi, Pál; Lehmkuhl, Frank
2017-04-01
Loess paleosol sequences (LPS) have the ability to preserve past environmental and climatic conditions. Therefore, they are a widely used terrestrial archive for the reconstruction of paleoclimatic dynamics. In this study, we use several proxies (grain size distributions, geochemical analysis, rock magnetism, and color measurements) to study past environmental changes in a LPS covering the MIS 2/MIS 3 transition. Geochronological control is given by post infrared infrared stimulated luminescence dating of polymineral fine grains. The research aim lies in the reconstruction of the paleoenvironmental conditions at the loess-paleosol sequence Bodrogkeresztúr in northeastern Hungary using a multi-proxy approach. The sequence is located at the foot of the Kopasz hill, the southernmost part of the Tokaj Mountains, which belong to the Carpathian mountain range. The area is famous for the Bodrogkeresztúr-Henye Gravettian site (Lengyel, 2015). The profile contains eolian loess deposits intercalated by two paleosols. The lower paleosol overlays possibly fluvial clay (fine overbank deposits) forming the base of the profile. The luminescence samples have been tested thoroughly and have been measured with the pIR50IR290 protocol (Thiel et al., 2011). The final age assessment between 28.0±2.1 ka and 33.5±2.5 ka fits well to the established geochronologies of the Kopasz hill (Sümegi and Hertelendi, 1998) and the Tokaj section (Schatz et al., 2012). Paleoenvironmental conditions are investigated through the multi-proxy approach. The measurement of the anisotropy of magnetic susceptibility is interpreted in regard of paleowind directions. The magnetic susceptibility is enhanced in paleosols, especially in the lower one, indicating strong pedogenesis. Grain size parameters also show high clay contribution in the lower paleosol, but also indicate two distinct features of stronger wind dynamics in the loess layer in the middle of the profile (double sigmoidal fluctuations in all
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Hajek, E. A.; Chamberlin, E.; Baisden, T.
2014-12-01
The richness of the deep-time record and its potential for revealing important characteristics of ancient fluvial landscapes has been demonstrated time and again, including compelling examples of rivers altering their behavior in response to changes in vegetation patterns or abrupt shifts in water and sediment discharge. At present, reconstructions of ancient river and floodplain dynamics are commonly qualitative, and when quantitative metrics are used, it is often for comparison among ancient deposits. Without being able to reconstruct, more comprehensively, important aspects of ancient river and floodplains dynamics, this information has only anecdotal relevance for evaluating and managing present-day landscapes. While methods for reconstructing hydrodynamic and morphodynamic aspects of ancient rivers and floodplains are useful, uncertainties associated with these snapshots complicate the ability to translate observations from geologic to engineering scales, thereby limiting the utility of insight from Earth's past in decision-making and development of sustainable landscape-management practices for modern fluvial landscapes. Here, we explore the degree to which paleomorphodynamic reconstructions from ancient channel and floodplain deposits can be used to make specific, quantitative inferences about ancient river dynamics. We compare a suite of paleoenvironmental measurements from a variety of ancient fluvial deposits (including reconstructions of paleoflow depth, paleoslope, paleo-channel mobility, the caliber of paleo-sediment load, and paleo-floodplain heterogeneity) in an effort to evaluate sampling and empirical uncertainties associated with these methods and identify promising avenues for developing more detailed landscape reconstructions. This work is aimed at helping to develop strategies for extracting practicable information from the stratigraphic record that is relevant for sustainably managing and predicting changes in today's environments.
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Use-inspired Paleoenvironmental Science and Data: A Deep Whole-Earth Time Dimension
Overpeck, J. T.
2016-12-01
The field of paleoenvironmental science has matured dramatically over the last 30 years, and paleo-data are now widely used to inform policy and other decision-making. The IPCC now incorporates paleo-perspectives in a prominent manner - centuries to millennia-long paleo records are key to assessing the full range of possible climate system behavior, how the Earth's climate system responds to large changes in forcing, how climate change may impact ecological, hydrological, oceanographic and many other systems that humans are concerned about. Paleohydroclimatic data increasingly are used by water managers, just as forest managers use paleo-fire data to understand the natural rhythms and processes so critical to healthy ecosystems and the services they provide. Paleo-data are now widely used for model evaluation, and for understanding what models may be missing - in this sense, the millennia-long observational record provided by paleoenvironmental data helps us avoid costly surprises. Success comes with responsibility, however. The more paleo-data and paleo-based understanding informs policy and other decisions, the more critical it is that paleo-data and the results built on them need to be openly shared, easily accessible and reproducible. The value of paleo-data grows with use, and thus data sharing serves to grow value to the society that ultimately pays for the research. The tradition of sharing paleo-data is built on an even longer tradition of sharing samples, and yet innovations are still needed to make sure samples are managed for future use, particularly as natural archives like glaciers, caves and corals are lost to climate change and other human activity. Scientific journals and data centers are constantly innovating; paleoenvironmental scientists must all play their part as well.
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Shanahan, T. M.; Hughen, K. A.; van Mooy, B.; Overpeck, J. T.; Baker, P. A.; Fritz, S.; Peck, J. A.; Scholz, C. A.; King, J. W.
2008-12-01
Although millennial-scale paleoenvironmental changes have been well characterized for high latitude sites, short-term climate variability in the tropics is less well understood. While the Intertropical Convergence Zone may act as an integrator of tropical climate changes, regional factors also play an important role in controlling the tropical response to climate forcing. Understanding these influences, and how they modulate the response to global climate forcing under different mean climate states is thus important for assessing how the tropics may respond to future climate change. Here, we examine new centennial-resolution records of paleoenvironmental change from isotopic and relative abundance data from molecular biomarkers in sediment cores from Lake Bosumtwi and Lake Titicaca. We assess the relative response of the West African and South American monsoon systems to millennial and suborbital-scale climate variability over the last ca. 30,000 years. While there is evidence for synchronous climate variability in the two systems, the dominant paleoenvironmental changes appear largely decoupled, highlighting the importance of regional climatology in controlling the response to climate forcing in tropical regions.
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Burdigalian turbid water patch reef environment revealed by larger benthic foraminifera
Novak, V.; Renema, W.; Throughflow-project
2012-04-01
Ancient isolated patch reefs outcropping from siliciclastic sediments are a trademark for the Miocene carbonate deposits occurring in East Kalimantan, Indonesia. They develop in transitional shelf sediments deposited between deltaic and deep marine deposits (Allen and Chambers, 1998). The Batu Putih Limestone (Wilson, 2005) and similar outcrops in adjacent areas have been characterized as shallow water carbonates influenced by high siliciclastic input, showing low relief patch reefs in turbid waters. Larger benthic foraminifera (LBF) are excellent markers for biochronology and paleoenvironmental reconstruction. This study aims to reveal age and paleoenvironment of a shallow water carbonate patch reef developed in mixed depositional system by using LBF and microfacies analysis. The studied section is located near Bontang, East Kalimantan, and is approximately 80 m long and 12 m high. It is placed within Miocene sediments in the central part of the Kutai Basin. Patch reef and capping sediments were logged through eight transects along section and divided into nine different lithological units from which samples were collected. Thin sections and isolated specimens of larger benthic foraminifera were analyzed and recognized to species level (where possible) providing age and environmental information. Microfacies analysis of thin sections included carbonate classification (textural scheme of Dunham, 1962) and assemblage composition of LBF, algae and corals relative abundance. Three environmentally indicative groups of LBF were separated based on test morphology, habitat or living relatives (Hallock and Glenn, 1986). Analysed foraminifera assemblage suggests Burdigalian age (Tf1). With use of microfacies analysis nine successive lithological units were grouped into five facies types. Paleoenvironmental reconstruction of LBF fossil assemblage indicate two cycles of possible deepening recorded in the section. Based on high muddy matrix ratio in analyzed thin-sections we
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Luli Gustiani
2017-07-01
Full Text Available A 30m-long sediment core covering the Holocene period was taken from the area of Gombong in the southern part of Central Java. The sediments were deposited in a shallow marine to lagoonal environment that was confirmed by the dominance of Ammonia beccarii along the core intervals. In addition, the species Quinqueloculina poeyana, Miliolinella lakemacquariensis, and Miliolinella subrotunda were also found in the sediments that are typical of normal shallow marine conditions. The decrease and increase in the abundance of these species throughout the core is an expression of sea level change in the area, which results the environmental changes. Low sea level is expressed by the dominance of Ammonia beccarii, and the low abundances or absence of the other three species. In contrast, high sea level stands are reflected by the presence of all four species. The high sea level would imply favorable conditions for benthic foraminifera because it would result in normal shallow marine conditions in the area. Finally, from this benthic assemblages study, it can be assumed that the environmental transformation from the originally shallow marine environment into land was occurred at level 5.5m depths of the sediment core, when all benthic foraminifera were terminated, including Ammonia beccarii. These new results from the shallow marine deposits in the Gombong area are a new contribution to the understanding of paleoenvironmental change in the region, which in turn is important for understanding sea level change as well as climate change in the region.
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Wershow, H.; Janssen, R.; Vonhof, H.; Lubbe, J. V. D.; Joordens, J. J.; Koutamanis, D. S.; Puspaningrum, M. R.; de Vos, J.; Reijmer, J.
2015-12-01
Climate plays a prominent role in ecosystem development in the biodiversity hotspot Sundaland (Malaysia and western Indonesia) throughout the Quaternary. Recurrent isolation and connection of the islands to mainland Asia due to sea level fluctuations has enabled repeated biotic migrations and encouraged genetic speciation. These migration waves also brought Homo erectus to Java. Together with extensive and well-documented collections of other terrestrial species, these hominin fossils form faunal assemblages of which the paleoenvironmental and paleogeographical background is poorly known. Using carbon, oxygen and strontium isotopes, we have reconstructed the paleoenvironmental and paleoecological conditions of several Holocene and Pleistocene fossil sites on Sumatra and Java, Indonesia. Carbon (∂13C) and oxygen (∂18O) isotope analysis of well-preserved herbivore teeth enamel reveals a marked contrast between C3-dominated diets in warmer periods, and C4-dominated diets in cooler periods, reflecting the distinct changes in Sundaland vegetation cover between glacials and interglacials. These isotope patterns allow us to assign the appropriate climatic background to some of the older fossil assemblages from Java, for which dating uncertainty does not allow direct assignment to glacial or interglacial conditions. The stable isotope signatures of herbivores from Trinil and Sangiran, sites well-known for the fossil occurrence of Homo erectus, indicate glacial conditions. The isotope data of several H. erectus fossils from these sites seem to be in line with such an interpretation. Furthermore, we applied strontium (87Sr/86Sr) isotope analyses to a sample subset. The preliminary data show distinct Sr-isotope ratios for different sites, providing clues for the applicability of this isotope technique in detecting climate-related mobility of Sundaland fossil faunas.
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Rasmussen, C.; Mundil, R.; Irmis, R. B.; Keller, C. B.; Giesler, D.; Gehrels, G. E.
2017-12-01
The Triassic is a critical period in Earth history that witnessed the origin of modern ecosystems and frequent climate fluctuations, as well as major environmental events such as flood basalt volcanism and bolide impacts. The Chinle Formation contains a primary non-marine archive for past ecosystems in North America due to its fossil richness and well-studied sedimentology. Moreover, within these highly fossiliferous strata, a biotic turnover has been reported that has been hypothesized to coincide with one or more of the aforementioned environmental events. Unfortunately, few radioisotopic ages have been published for the Late Triassic, limiting our ability for lithological and paleoenvironmental correlations. In addition, the superposition of the Chinle Formation remains illusive due to frequent lateral facies changes and discontinuous outcrops across the Colorado Plateau. The 520 m long core 1A of the Colorado Plateau Coring Project from Petrified Forest National Park (PFNP) (Arizona) provides, for the first time, a continuous section of these early Mesozoic sedimentary strata. Many of the sand- and siltstones from this continuous succession throughout most of the Upper Triassic Chinle Formation contain euhedral zircons suitable for U-Pb analyses. We analyzed >300 crystals each from 10 samples using LA-ICPMS; these results indicated abundant Late Triassic crystals that appear to be closely associated with the depositional age of the host rock. We then selected the youngest grains from these samples to obtain precise CA-TIMS U-Pb single zircon ages in order to constrain the maximum depositional ages (using quantitative methods) of these formations. We are able to revise the proposed time scale (based on outcrop samples) for Upper Triassic strata at PFNP and evaluate whether the biotic turnover observed within the Sonsela Member of these strata coincides with the Manicouagan bolide impact event. This revised chronostratigraphic framework allows intercalibration
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Nomade, S.; Pastre, J.; Guillou, H.; Gauthier, A.; Scaillet, S.
2008-12-01
Lacustrine maar sequences of the French Massif Central are of great interest for paleoclimatic and paleoenvironmental reconstructions of mid-latitudes Quaternary continental environments. In particular, the western Velay region yields exceptional sequences spanning the last 450 ka (Reille et al., J. Quat. Sci. 2000). However, older sequences remain largely unknown despite the presence of interbedded alkaline tephras allowing precise absolute radiochronological control of many lacustrine squences. The Alleret maar is a 1500 m wide phreatomagmatic crater that provides a long lacustrine sequence (41 m). The upper part of this sequence (AL2 core, 14.6 m) was studied between 2005 and 2006 (Pastre et al., C. R. Acad Sci, 2007). A 39Ar/40Ar date (557 ± 5ka) obtained from an interbedded tephra layer located at 7m as well as the associated pollen data attribute the beginning of this sequence to the MIS 15. Thanks to the AL3 core recovered in 2005 (40.6 m, CNRS Meudon) several new tephra layers were discovered in the bottom part of this lacustrine sequence. Three new 39Ar/40Ar ages (single crystal analyses) from trachytic tephra layers were obtained at the LSCE Argon Laboratory (France). These layers are located at -30.2, -36.2 and -39.2m. Ages obtained relative to the ACR-2 flux standard (1,201Ma, Kuiper et al., Science, 2008) range from 692 ± 6 ka (MSWD: 2.3, n=18) for the youngest (-30.2m) to 726 ± 9Ka Ka (MSWD: 2.2, n=12) for the lowest tephra located at -39.2m. These new dates indicate a relatively homogeneous deposition rate of 3.5cm/ka and that the last 10 meters cover the MIS 17-MIS18 period. According to these current radiochronological data the complete lacustrine sequence last more than 150ka. Ongoing sedimentary and pollen studies will allow to extend the paleoenvironmental and paleoclimatic records of the French Massif Central towards the beginning of the early middle Pleistocene.
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LATE GLACIAL AND HOLOCENE BIOCLIMATIC RECONSTRUCTION IN SOUTHERN ITALY: THE TRIFOGLIETTI LAKE
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E. Brugiapaglia
2013-04-01
Full Text Available The pollen record from Trifoglietti lake (Calabria region provides new information about the paleoenvironmental and palaeoclimatic changes occurred during the LateGlacial and Holocene period. The LateGlacial part of the record, for which only preliminary data is available, is a new and original sequence from southern Italy. The Holocene sequence, with 11 AMS radiocarbon dates shows a stable Fagus forest for the entire period. Apart from sporadic pastoralism activities and the selective exploitation of Abies, only a weak human impact is recognized in the pollen records. Lake level oscillations have been reconstructed and annual precipitations quantified using the Modern Analogue Technique. The reconstruction was effectuated both at millennial and centennial scale: the first shows an increasing of moisture from 11000 to 9400 cal BP and a maximum of humidity from 9400 to 6200 cal BP. Moreover, several climatic oscillations punctuated the Holocene and therefore superimposed the millennial trend.
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Rodrigo-Gámiz, Marta; Martínez-Ruiz, Francisca; Rodríguez-Tovar, Francisco J.; Pardo-Igúzquiza, Eulogio; Ortega-Huertas, Miguel
2018-04-01
The timing of climate responses to the Bond cycle is investigated in the western Mediterranean. Periodicities had been previously reported in a marine sediment record from this region spanning the last 20 kyr, and registered by diverse paleoenvironmental proxies, in particular those associated with terrigenous input, redox conditions, productivity, sea surface temperature (SST) and salinity. Further cross-spectral analyses on these time series reveal leads-lags in the 1400 year climate cycle. Considering as reference a terrigenous input proxy (the K/Al ratio), all the paleoenvironmental proxies displayed time shifts varying from ca. 700 year to ca. 350 year. SST and salinity variations show a first leaded response with the inflow of cold and less salty Atlantic waters. Followed by a time lead of 525 year, progresively arid conditions with an increase of eolian dust transport to the area, given by the Zr/Al signal, are observed. The intensification of dust transport could have triggered a latest biological response, lead by 350 year, with an increase of productivity, as suggested by the Ba/Al ratio. Lastly changes in the Mediterranean thermohaline circulation, indicated by a selected redox proxy (the U/Th ratio), are observed. These results support that the oceanic response triggered the atmospheric response to the Bond cycle in the western Mediterranean. Changes in the North Atlantic Oscillation mode and in the Inter-Tropical Convergence Zone migrations with variations in the monsoon activity or Saharan winds system, are considered as main forcing mechanisms, with a complex relationship of the involved phenomena.
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Marcos Antonio Batista dos Santos Filho
Full Text Available Paleoecological analyses are important tools for the reconstruction of paleoenvironments. This paper had the objective of using analysis of ostracode assemblages and carbonate microfacies of a well (Carbomil and an outcrop (Quixeré from the Jandaíra Formation, Potiguar Basin, in order to verify how they corroborate and complement the other. Two paleoenvironments for Carbomil Well (assemblages 1 and 2, respectively marine and brackish to neritic environments and one for Quixeré Outcrop (assemblage 3, marine environment were identified through the ostracode assemblage analysis. Thin section analysis allowed the identification of two different facies for Carbomil Well, i.e. bioclastic packstones to wackstones, a marine brackish or restricted marine system; and bioclastic grainstones to packstones, a normal, shallow marine system. High levels of alteration on the samples prevented an adequate analysis of Quixeré Outcrop; however, it seems to point towards a low-energy environment. Overall, information provided by the thin sections corroborate and complement data of the ostracode assemblages, which allowed a higher degree of certainty for the paleoenvironmental analysis.
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Rissolo, D.; Reinhardt, E. G.; Collins, S.; Kovacs, S. E.; Beddows, P. A.; Chatters, J. C.; Nava Blank, A.; Luna Erreguerena, P.
2014-12-01
A massive pit deep within the now submerged cave system of Sac Actun, located along the central east coast of the Yucatan Peninsula, contains a diverse fossil assemblage of extinct megafauna as well as a nearly complete human skeleton. The inundated site of Hoyo Negro presents a unique and promising opportunity for interdisciplinary Paleoamerican and paleoenvironmental research in the region. Investigations have thus far revealed a range of associated features and deposits which make possible a multi-proxy approach to identifying and reconstructing the natural and cultural processes that have formed and transformed the site over millennia. Understanding water-level fluctuations (both related to, and independent from, eustatic sea level changes), with respect to cave morphology is central to understanding the movement of humans and animals into and through the cave system. Recent and ongoing studies involve absolute dating of human, faunal, macrobotanical, and geological samples; taphonomic analyses; and a characterization of site hydrogeology and sedimentological facies, including microfossil assemblages and calcite raft deposits.
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Sadori, Laura; Koutsodendris, Andreas; Panagiotopoulos, Konstantinos; Masi, Alessia; Bertini, Adele; Combourieu-Nebout, Nathalie; Francke, Alexander; Kouli, Katerina; Joannin, Sébastien; Mercuri, Anna Maria; Peyron, Odile; Torri, Paola; Wagner, Bernd; Zanchetta, Giovanni; Sinopoli, Gaia; Donders, Timme H.
2016-01-01
Lake Ohrid is located at the border between FYROM (Former Yugoslavian Republic of Macedonia) and Albania and formed during the latest phases of Alpine orogenesis. It is the deepest, the largest and the oldest tectonic lake in Europe. To better understand the paleoclimatic and paleoenvironmental
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Paleoenvironmental conditions across the Jurassic-Cretaceous boundary in central-eastern Mexico
Martínez-Yáñez, Mario; Núñez-Useche, Fernando; López Martínez, Rafael; Gardner, Rand D.
2017-08-01
The Padni section of central-eastern Mexico is characterized by pelagic, organic-rich carbonates and shales dated in this study by calpionellid biostratigraphy to the late Tithonian-late Berriasian time interval. Microfacies, pyrite framboid size, spectrometric gamma-ray and mineralogical data are herein integrated in order to reconstruct the paleoenvironmental change during the Jurassic-Cretaceous boundary. Deposits of the late Tithonian-early Berriasian are characterized by laminated, organic-rich facies with abundant radiolarian, tiny pyrite framboids and low Th/U ratios. They are linked to upwelling in a semi-restricted basin, high marine productivity and anoxic bottom waters. The early incursions of Tethyan oceanic waters into the proto-Gulf of Mexico occurred during late Tithonian as attested the appearance of calpionellids. Short and intermittent accumulations of saccocomids during early Berriasian suggest episodes of sporadic connection between the Tethys, the proto-Atlantic and the Pacific ocean during sea-level rise events. A full and stable connection between the Tethys and proto-Gulf of Mexico was established until the late Berriasian. This event is supported by the presence of open marine and bioturbated facies with a framboid population typical of dysoxic conditions, higher Th/U ratios and a decreasing pattern of the total organic carbon content. In addition to highlighting the replenishment of the oxygen supply to the basin, this facies also points to a younger age for the finalization of the Yucatán Block rotation and the end of the Gulf of Mexico opening. Deposition of the studied section occurred mostly during a Tithonian-Berriasian arid phase reported in other Tethyan and Atlantic regions. The similarity between the discrete segments of the standard gamma-ray curve defined in the studied outcrop and those reported from subsurface implies their regional continuity allowing their use for correlation purposes.
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Behrensmeyer, A. K.; Potts, R.; Deino, A. L.
2017-12-01
prevailed in the Olorgesailie Basin to the north. This sets the stage for paleoenvironmental reconstructions that relate closely in time and space to documented changes in the archeology and faunas, which record critical transitions in technology and mammalian communities over the past 1.2 ma.
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LIDIA A. KUHN
2017-10-01
Full Text Available ABSTRACT This paper presents a paleoenvironmental reconstruction from palynological analyses of a sedimentary core of Holocene age, drilled at municipality of Garopaba (Santa Catarina, Southern Brazil. A total of 46 samples was collected for palynological analyses in the 450 cm-long core PCSC-3, as also three samples for radiocarbon dating and granulometric analyses. The palynological content includes 84 taxa related to pollen grains of angiosperms (38 and gimnosperm (3, spores of pteridophyta (16 and bryophyta (2, spores of fungi (8, algae (3, acritarchs (3, dinoflagellate cysts (2 and microforaminiferal linings (1. Three specimens of acritarchs are described and illustrated in detail. Three palynological phases were defined based on changes in assemblages: Phase I, Phase II and Phase III. The Phase I is characterized as a lagoonal paleoenvironment with marine influence from the beginning of the sedimentation (5390 cal yr BP, based on occurrences of acritarchs, dinoflagellate cysts and microforaminiferal linings. The Phase II (3032 yr BP until 858 cal yr BP also is characterized by a lagoonal paleoenvironment, however, presented decrease in percentage of marine elements and increase in freshwater algae record, suggesting less marine influence in the lagoonal body. In Phase III (last 856 years, underwater sedimentation prevailed, under swamp-like conditions.
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Diatom-Based Paleoenvironmental Reconstruction of Lake Telmen for the Last 6230 Years
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N.Soninkhishig
2003-06-01
Full Text Available The preserved diatom flora in a 14C dated (0-6230 yBP, 343 cm long core sequence from Lake Telmen, Mongolia, was investigated to determine the nature of the lake-ecosystem and watershed response to Late Holocene climate change. Modern Lake Telmen is a slightly saline (presently 4 g L-1 closed- basin lake located along a N-S and E-W aridity ecotone in north-central Mongolia, making it sensitive to climate-driven changes in effective moisture balance. Diatoms were not preserved regularly in two areas of the Lake Telmen sediment record (5380-41 50 yBP and 1050-425 yBP possibly due to high carbonate preservation; however, diatom preservation between these areas was good to excellent. Diatom-based paleosalinity reconstruction using species-specific salinity optima from the Northern Great Plains of North America and community analysis suggests the following climate-lake response model during the Late Holocene. From 6230 to 5520 radiocarbon years ago, warm-dry climate resulted in a small salty (20 g L-1 lake in the Telmen basin that was dominated by high salinity indicator species (e.g. Cyclotella caspia, Navicellapusilla, Brachysira aponina. From 3 860 to 1200 radiocarbon yBP, Lake Telmen recorded a period of a modulating climate that resulted in regular fluctuations in paleosalinity from 2 to 4 g L-1 in conjunction with lake level changes. Dominance in the diatom flora fluctuated between the freshwater planktonic form Cyclotella bodanica var. affinis and the salinity-tolerant benthic taxon Anomoeoneis sphaerophora f. costata during this period characterized by generally more humid climatic periods interspersed with dry-as-present conditions. The most modern samples (0-250 yBP preserve floristic assemblages similar to those found between 3860 to 1200 radiocarbon yBP and indicate that as recently as 250 years ago Lake Telmen had lower salinity values than modern day.
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Bailey, Geoffrey N; Reynolds, Sally C; King, Geoffrey C P
2011-03-01
This paper examines the relationship between complex and tectonically active landscapes and patterns of human evolution. We show how active tectonics can produce dynamic landscapes with geomorphological and topographic features that may be critical to long-term patterns of hominin land use, but which are not typically addressed in landscape reconstructions based on existing geological and paleoenvironmental principles. We describe methods of representing topography at a range of scales using measures of roughness based on digital elevation data, and combine the resulting maps with satellite imagery and ground observations to reconstruct features of the wider landscape as they existed at the time of hominin occupation and activity. We apply these methods to sites in South Africa, where relatively stable topography facilitates reconstruction. We demonstrate the presence of previously unrecognized tectonic effects and their implications for the interpretation of hominin habitats and land use. In parts of the East African Rift, reconstruction is more difficult because of dramatic changes since the time of hominin occupation, while fossils are often found in places where activity has now almost ceased. However, we show that original, dynamic landscape features can be assessed by analogy with parts of the Rift that are currently active and indicate how this approach can complement other sources of information to add new insights and pose new questions for future investigation of hominin land use and habitats. Copyright © 2010 Elsevier Ltd. All rights reserved.
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Large-scale coastal and fluvial models constrain the late Holocene evolution of the Ebro Delta
Directory of Open Access Journals (Sweden)
J. H. Nienhuis
2017-09-01
Full Text Available The distinctive plan-view shape of the Ebro Delta coast reveals a rich morphologic history. The degree to which the form and depositional history of the Ebro and other deltas represent autogenic (internal dynamics or allogenic (external forcing remains a prominent challenge for paleo-environmental reconstructions. Here we use simple coastal and fluvial morphodynamic models to quantify paleo-environmental changes affecting the Ebro Delta over the late Holocene. Our findings show that these models are able to broadly reproduce the Ebro Delta morphology, with simple fluvial and wave climate histories. Based on numerical model experiments and the preserved and modern shape of the Ebro Delta plain, we estimate that a phase of rapid shoreline progradation began approximately 2100 years BP, requiring approximately a doubling in coarse-grained fluvial sediment supply to the delta. River profile simulations suggest that an instantaneous and sustained increase in coarse-grained sediment supply to the delta requires a combined increase in both flood discharge and sediment supply from the drainage basin. The persistence of rapid delta progradation throughout the last 2100 years suggests an anthropogenic control on sediment supply and flood intensity. Using proxy records of the North Atlantic Oscillation, we do not find evidence that changes in wave climate aided this delta expansion. Our findings highlight how scenario-based investigations of deltaic systems using simple models can assist first-order quantitative paleo-environmental reconstructions, elucidating the effects of past human influence and climate change, and allowing a better understanding of the future of deltaic landforms.
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Antarctic and Southern Ocean influences on Late Pliocene global cooling
McKay, R.; Naish, T.; Carter, L.; Riesselman, C.; Dunbar, R.; Sjunneskog, C.; Winter, D.; Sangiorgi, F.; Warren, C.; Pagani, M.; Schouten, S.; Willmott, V.; Levy, R.; DeConto , R.M.; Powell, R.D.
2012-01-01
The influence of Antarctica and the Southern Ocean on Late Pliocene global climate reconstructions has remained ambiguous due to a lack of well-dated Antarctic-proximal, paleoenvironmental records. Here we present ice sheet, sea-surface temperature, and sea ice reconstructions from the ANDRILL
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Directory of Open Access Journals (Sweden)
Sérgio Bergamaschi
2016-03-01
Full Text Available Itararé Group represents the glacial record of Gondwana Continent in the intracratonic Paraná Basin, encompassing regions of Southern Brazil, Eastern Paraguay, Northeast Argentina and Northern Paraguay. Itararé Group is the thickest sedimentary package of Paraná Basin, and was deposited over 36 million years during the end of the Carboniferous and the beginning of the Permian. However, in relation to its paleoenvironmental evolution, it is generally understood that more research is necessary, in order to better understand the genesis of the Itararé Group in different places. The present work entailed mapping facies associations for the Itararé Group in the city of Salto, in São Paulo State, by identifying and classifying sedimentary facies that, in turn, were utilized to develop a paleoenvironmental evolution model. This model was based on geological mapping carried out over 125 km². Petrological and petrographic descriptions of 32 outcrops of Itararé Group also were studied. These results were compared with subsurface data obtained by Sistema de Informações de Águas Subterrâneas, Serviços Geológicos do Brasil (SIAGAS-CPRM; System Water Information Groundwater, Geological Survey of Brazil. Through lithofacies and petrographic analyses and making a comparison between five column sections, surface and subsurface data, a stratigraphic correlation model was established for the region. Through this model was possible to identify four facies associations, which, together, indicate how the paleoenvironmental evolution of the region occurred. The first three associations (A, B, C were interpreted as being formed in subaqueous environment, being related to sandy lobe systems, followed by the last association (D, pertaining to a fluvial system.
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Galy, V.; French, K. L.; Hein, C. J.; Haghipour, N.; Wacker, L.; Kudrass, H.; Eglinton, T. I.
2017-12-01
The stable isotope composition of leaf-wax compounds preserved in lacustrine and marine sediments has been widely used to reconstruct terrestrial paleo-environments. However, the timescales of plant-wax storage in continental reservoirs before riverine export are not well known, representing a key uncertainty in paleo-environment studies. We couple numerical models with bulk and leaf-wax fatty acid organic 13C and 14C signatures hosted in a high-deposition-rate sediment core from the Bengal shelf canyon in order to estimate storage timescales within the Ganges-Brahmaputra catchment area. The fatty acid 14C record reveals a muted nuclear weapons bomb spike, requiring that the Ganges-Brahmaputra river system exports a mixture of young and old (pre-aged) leaf-wax compounds. According to numerical simulations, 79-83% of the leaf-wax fatty acids in this core are sourced from continental reservoirs that store organic carbon on an average of 1000-1200 calendar years, while the remainder has an average age of 15 years. These results demonstrate that a majority of the leaf-wax compounds produced in the Ganges-Brahmaputra river basin was stored in soils, floodplains, and wetlands prior to its export to the Bengal Fan. We will discuss the implications of these findings for plant-wax based paleoenvironmental records.
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Toscano, Marguerite A.
2016-06-01
Sample elevations corrected for tectonic uplift and assessed relative to local modeled sea levels provide a new perspective on paleoenvironmental history at Cobbler's Reef, Barbados. Previously, 14C-dated surface samples of fragmented Acropora palmata plotted above paleo sea level based on their present (uplifted) elevations, suggesting supratidal rubble deposited during a period of extreme storms (4500-3000 cal BP), precipitating reef demise. At several sites, however, A. palmata persisted, existing until ~370 cal BP. Uplift-corrected A. palmata sample elevations lie below the western Atlantic sea-level curve, and ~2 m below ICE-6G-modeled paleo sea level, under slow rates of sea-level rise, negating the possibility that Cobbler's Reef is a supratidal storm ridge. Most sites show limited age ranges from corals likely damaged/killed on the reef crest, not the mixed ages of rubble ridges, strongly suggesting the reef framework died off in stages over 6500 yr. Reef crest death assemblages invoke multiple paleohistoric causes, from ubiquitous hurricanes to anthropogenic impacts. Comparison of death assemblage ages to dated regional paleotempestological sequences, proxy-based paleotemperatures, recorded hurricanes, tsunamis, European settlement, deforestation, and resulting turbidity, reveals many possible factors inimical to the survival of A. palmata along Cobbler's Reef.
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Are the paleoclimatic reconstructions based on mammals biased by the local landscape?
Garcia-Alix, Antonio
2017-04-01
The paleoclimatic reconstructions deduced from mammal associations might have been biased by the complex local effect of the landscape. This effect is especially important in tectonically active regions where important landscape changes occurred in short-time periods. In this abstract, I present a coupled paleoenvironmental approach 1) using the ecological requirement of the faunal associations, and 2) using isotopic analyses in both sediments and small mammal teeth in order to discern between climate and landscape effects. Southern Iberian Peninsula was a tectonically active area during the late Miocene and Pliocene, and the environmental and humidity data deduced from the faunal associations agree with the sedimentary evolution of the basin. However, these humidity trends are usually opposite to the humidity reconstruction deduced from the carbon isotopic data in rodent teeth and from the isotopic composition of the sediments (C and O), which are scarcely influenced by the landscape. So, changes in the landscape, probably boosted by tectonics, gave rise to the development of endorheic and/or exorheic systems in the areas and conditioned the extension of these systems, affecting taxa with high dependence on humidity. Similar outcomes have been observed in early-middle Miocene records from north Spain. In those cases, the response of small mammal associations to abrupt climate changes might have been also buffered by the landscape. On the other hand, records where there was no important landscape changes, such as those from an early- middle Miocene coastal area of eastern Spain, do not show that disagreement in the humidity and environmental reconstructions following both methods.
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paleoenvironmental settings and assemblage changes
African Journals Online (AJOL)
Kasanzu
shallow borehole drilled in the southern coastal basin of Tanzania with the aim of characterizing foraminifera and palynomorphs assemblage changes aiming at reconstructing ..... decline in temperature at EOT which caused the extinction of ...
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Loomis, S.E.; Russell, J.M.; Eggermont, H.; Verschuren, D.; Sinninghe Damsté, J.S.
2014-01-01
Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are membrane lipids found in soils and sediments and their relative abundance correlates with temperature and pH, enabling them to be used as proxies in reconstructing past climatic and environmental conditions. However, the potential for
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Palcu, D. V.; Golovina, L. A.; Vernyhorova, Y. V.; Popov, S. V.; Krijgsman, W.
2017-11-01
Marine gateways prove to be important factors for changes in the ecology and biochemistry of marginal seas. Changes in gateway configuration played a dominant role in the Middle Miocene paleogeographic evolution of the Paratethys Sea that covered Central Eurasia. Here, we focus on the connection between the Central (CP) and Eastern Paratethys (EP) to understand the paleoenvironmental changes caused by the evolution of this marine gateway. We first construct an integrated magneto-biostratigraphic framework for the late Langhian-Serravallian (Chokrakian-Karaganian-Konkian-Volhynian) sedimentary record of the eastern domain, which allows a correlation to the well-dated successions west of the gateway. The magneto-biostratigraphic results from the Zelensky-Panagia section on the Black Sea coast of Russia show that the Chokrakian/Karaganian boundary has an age of 13.8 Ma, the Karaganian/Konkian boundary is dated at 13.4 Ma, and the Konkian/Volhynian boundary at 12.65 Ma. We identify three major phases on gateway functioning that are reflected in specific environmental changes. During the Karaganian, the EP turned into a lake-sea that supplied a unidirectional flow of low-salinity waters to the west, where the CP sea experienced its Badenian Salinity Crisis. This configuration is remarkably similar to the Mediterranean during its Messinian Salinity Crisis. The second phase is marked by a marine transgression from the west, reinstalling open-marine conditions in the CP and causing marine incursions in the EP during the Konkian. The Volhynian is characterized by a new gateway configuration that allows exchange between CP and EP, creating unified conditions all over the Paratethys. We hypothesize that a density driven pumping mechanism is triggered by the increase in connectivity at the Konkian/Volhynian boundary, which simultaneously caused major paleoenvironmental changes at both sides of the gateway and led to the Badenian-Sarmatian extinction event in the CP.
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Reconstruction of a semi-arid late Pleistocene paleocatena from the Lake Victoria region, Kenya
Beverly, Emily J.; Driese, Steven G.; Peppe, Daniel J.; Arellano, L. Nicole; Blegen, Nick; Faith, J. Tyler; Tryon, Christian A.
2015-11-01
The effect of changing environment on the evolution of Homo sapiens is heavily debated, but few data are available from equatorial Africa prior to the last glacial maximum. The Karungu deposits on the northeast coast of Lake Victoria are ideal for paleoenvironmental reconstructions and are best studied at the Kisaaka site near Karunga in Kenya (94 to > 33 ka) where paleosols, fluvial deposits, tufa, and volcaniclastic deposits (tuffs) are exposed over a 2 km transect. Three well-exposed and laterally continuous paleosols with intercalated tuffs allow for reconstruction of a succession of paleocatenas. The oldest paleosol is a smectitic paleo-Vertisol with saline and sodic properties. Higher in the section, the paleosols are tuffaceous paleo-Inceptisols with Alfisol-like soil characteristics (illuviated clay). Mean annual precipitation (MAP) proxies indicate little change through time, with an average of 764 ± 108 mm yr- 1 for Vertisols (CALMAG) and 813 ± 182 to 963 ± 182 mm yr- 1 for all paleosols (CIA-K). Field observations and MAP proxies suggest that Karungu was significantly drier than today, consistent with the associated faunal assemblage, and likely resulted in a significantly smaller Lake Victoria during the late Pleistocene. Rainfall reduction and associated grassland expansion may have facilitated human and faunal dispersals across equatorial East Africa.
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Holocene coastal paleoenvironmental record, Bay of Brest
Fernane, Assia; Gandouin, Emmanuel; Goslin, Jérôme; Penaud, Aurélie; Van Vliet lanoë, Brigitte
2013-04-01
Coastal areas are sensitive environments regarding the risk of submersion and the impact on biodiversity induced by salinity changes. These areas thus provide good palaeocecological archives to monitor palaeo sea level changes and the associated adaptation of different biological communities. The north-western coast of France has poorly been investigated regarding its Holocene palaeoecological signatures (Morzadec-Kerfourn, 1974; Naughton et al., 2007). Chironomids have been recognized to be an efficient tool for palaeoclimate and palaeosalinity reconstructions in lakes (Brooks, 2006), and more recently in river floodplains (Gandouin et al, 2006). In this study, environmental changes related to both climate processes and human disturbances, were reconstructed over the last 5000 years, based on pollen and chironomid assemblages from two coastal cores retrieved at Pors Milin (Brittany, NW France). The sedimentary sequences consist of terrestrial peaty layers interdigited with marine clastic deposits. The study area is composed by a sandy beach, truncating the peat, limited by a high sandy bar, and a back marsh developed at + 4 m NGF. Pollen and chironomid results reveal that anthropogenic factors would mainly control environmental changes that occurred in this sector. The disappearance of many chironomid taxa (inhabitants of main river channel) and the dramatic fall in diversity may have been induced by the development of the Merovingian forest clearance at Pors Milin. Indeed, we suggest that the development of agriculture, the river embankment and the draining of wetlands may explain the chironomid habitat loss and the subsequent fall of biodiversity. This change in faunal assemblages occurred synchronously with a decrease in the "arborean / non arborean" pollen ratio reflecting the land opening of the watershed. Several nitrophilous and anthropogenic pollen taxa reinforce our hypothesis concerning the development of agricultural and livestock farming activities at
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International Nuclear Information System (INIS)
Pazos, P.; Tofalo, M.; Gonzalez
1998-01-01
The named Yapeyu paleosurface placed between Yapeyu and del Palacio Members of the Asencio Formations is anlalyzed in outcrops of the Pedro Chico, Gruta del Palacio and Cca. Arroyo Coquimbo localities. Herrein, its morphologic and paleoenvironmental features are considered to attribute an paleosoil origin for this. This paleosurface is indicative of an important break in the sedimentation and contain several indicators of paleoclimatic tropical and humid conditions. Following allostratigraphic schemes, the paleosurface represent the lower contact of the Asencio Formation constituting a new stratigraphic proposal. Finally, taking into account sedimentalogical features the alluvial origin by the conglomerates of del Palacio Member is rejected. (author)
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EEG source reconstruction reveals frontal-parietal dynamics of spatial conflict processing.
Cohen, Michael X; Ridderinkhof, K Richard
2013-01-01
Cognitive control requires the suppression of distracting information in order to focus on task-relevant information. We applied EEG source reconstruction via time-frequency linear constrained minimum variance beamforming to help elucidate the neural mechanisms involved in spatial conflict processing. Human subjects performed a Simon task, in which conflict was induced by incongruence between spatial location and response hand. We found an early (∼200 ms post-stimulus) conflict modulation in stimulus-contralateral parietal gamma (30-50 Hz), followed by a later alpha-band (8-12 Hz) conflict modulation, suggesting an early detection of spatial conflict and inhibition of spatial location processing. Inter-regional connectivity analyses assessed via cross-frequency coupling of theta (4-8 Hz), alpha, and gamma power revealed conflict-induced shifts in cortical network interactions: Congruent trials (relative to incongruent trials) had stronger coupling between frontal theta and stimulus-contrahemifield parietal alpha/gamma power, whereas incongruent trials had increased theta coupling between medial frontal and lateral frontal regions. These findings shed new light into the large-scale network dynamics of spatial conflict processing, and how those networks are shaped by oscillatory interactions.
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EEG source reconstruction reveals frontal-parietal dynamics of spatial conflict processing.
Directory of Open Access Journals (Sweden)
Michael X Cohen
Full Text Available Cognitive control requires the suppression of distracting information in order to focus on task-relevant information. We applied EEG source reconstruction via time-frequency linear constrained minimum variance beamforming to help elucidate the neural mechanisms involved in spatial conflict processing. Human subjects performed a Simon task, in which conflict was induced by incongruence between spatial location and response hand. We found an early (∼200 ms post-stimulus conflict modulation in stimulus-contralateral parietal gamma (30-50 Hz, followed by a later alpha-band (8-12 Hz conflict modulation, suggesting an early detection of spatial conflict and inhibition of spatial location processing. Inter-regional connectivity analyses assessed via cross-frequency coupling of theta (4-8 Hz, alpha, and gamma power revealed conflict-induced shifts in cortical network interactions: Congruent trials (relative to incongruent trials had stronger coupling between frontal theta and stimulus-contrahemifield parietal alpha/gamma power, whereas incongruent trials had increased theta coupling between medial frontal and lateral frontal regions. These findings shed new light into the large-scale network dynamics of spatial conflict processing, and how those networks are shaped by oscillatory interactions.
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EEG Source Reconstruction Reveals Frontal-Parietal Dynamics of Spatial Conflict Processing
Cohen, Michael X; Ridderinkhof, K. Richard
2013-01-01
Cognitive control requires the suppression of distracting information in order to focus on task-relevant information. We applied EEG source reconstruction via time-frequency linear constrained minimum variance beamforming to help elucidate the neural mechanisms involved in spatial conflict processing. Human subjects performed a Simon task, in which conflict was induced by incongruence between spatial location and response hand. We found an early (∼200 ms post-stimulus) conflict modulation in stimulus-contralateral parietal gamma (30–50 Hz), followed by a later alpha-band (8–12 Hz) conflict modulation, suggesting an early detection of spatial conflict and inhibition of spatial location processing. Inter-regional connectivity analyses assessed via cross-frequency coupling of theta (4–8 Hz), alpha, and gamma power revealed conflict-induced shifts in cortical network interactions: Congruent trials (relative to incongruent trials) had stronger coupling between frontal theta and stimulus-contrahemifield parietal alpha/gamma power, whereas incongruent trials had increased theta coupling between medial frontal and lateral frontal regions. These findings shed new light into the large-scale network dynamics of spatial conflict processing, and how those networks are shaped by oscillatory interactions. PMID:23451201
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Directory of Open Access Journals (Sweden)
Julieta Massaferro
2009-06-01
the biological indicators from lake sediments more useful in environmental reconstructions. Chironomids have recently acquired great importance due to the promising results obtained regarding climatic reconstructions mainly in Europe and North America. In South America, the use of fossil chironomids in Quaternary studies is still limited and the reason for that is the little regional taxonomic knowledge. Most of these studies were developed in glacial lakes in Patagonia both in Argentina and Chile. The larvae of chironomids are an invaluable paleolimnological tool due to the sensitiveness of these insects to natural and non-natural environmental changes. In addition to that, this group of insects is widely distributed with a high abundance and diversity. Their head capsules can preserve in sediments holding characters which allow their generic and sometimes specific identification. The study of chironomid assemblages can be used with different goals, for instance, to study eutrofication due to their quick response to changes in organic matter, nutrients and heavy metals. However, one of the most significant potentials of this group is its sensitivity to temperature variations, which is why the most important implementation of their study in sediments is centered in climatic reconstructions. This article is a review of the studies developed in Argentinean and Chilean Patagonia, using fossil chironomids for paleoenvironmental reconstructions.
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Directory of Open Access Journals (Sweden)
MARIA V.TRIANTAPHYLLOU
2003-11-01
Full Text Available The present study, based mainly on the analysis of foraminifers and ostracodes, provides evidence of paleoenvironmental changes on the coastal plain of Marathon (E. Greece during the last 6.000 yrs. Three sedimentary units -lagoonal formations - were recognized and identified as A, B and C. They range in time between before 5500BP-3500BP, 3500BP-2500BP and 2500BP-recent, respectively. The study of the brackish marsh microfauna of the Marathon plain Holocene sediments reveals the presence, during the last 5500 yrs., of three distinct biofacies in the sedimentary units already established. Alternating mesohaline - oligohaline (MO, oligohaline - fresh water (OFW and mesohaline - oligohaline to oligohaline - fresh water (MO-OFW biofacies in the framework of the sedimentary units indicate a general trend landward along the plain suggesting a slowing of sea-level rise probably correlated with a relevant tectonic uplift. One prominent feature of this study is the clarification of the ecological preference of the species Trichohya1us aguayoi (Bermudez, 1935, which is dominant in oligohaline conditions under an influence of fresh water input (salinity less than 15 ‰.
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Kotthoff, Ulrich; Groeneveld, Jeroen; Ash, Jeanine L.; Fanget, Anne-Sophie; Quintana Krupinski, Nadine; Peyron, Odile; Stepanova, Anna; Warnock, Jonathan; Van Helmond, Niels A. G. M.; Passey, Benjamin H.; Rønø Clausen, Ole; Bennike, Ole; Andrén, Elinor; Granoszewski, Wojciech; Andrén, Thomas; Filipsson, Helena L.; Seidenkrantz, Marit-Solveig; Slomp, Caroline P.; Bauersachs, Thorsten
2017-12-01
Sediment records recovered from the Baltic Sea during Integrated Ocean Drilling Program Expedition 347 provide a unique opportunity to study paleoenvironmental and climate change in central and northern Europe. Such studies contribute to a better understanding of how environmental parameters change in continental shelf seas and enclosed basins. Here we present a multi-proxy-based reconstruction of paleotemperature (both marine and terrestrial), paleosalinity, and paleoecosystem changes from the Little Belt (Site M0059) over the past ˜ 8000 years and evaluate the applicability of inorganic- and organic-based proxies in this particular setting. All salinity proxies (diatoms, aquatic palynomorphs, ostracods, diol index) show that lacustrine conditions occurred in the Little Belt until ˜ 7400 cal yr BP. A connection to the Kattegat at this time can thus be excluded, but a direct connection to the Baltic Proper may have existed. The transition to the brackish-marine conditions of the Littorina Sea stage (more saline and warmer) occurred within ˜ 200 years when the connection to the Kattegat became established after ˜ 7400 cal yr BP. The different salinity proxies used here generally show similar trends in relative changes in salinity, but often do not allow quantitative estimates of salinity. The reconstruction of water temperatures is associated with particularly large uncertainties and variations in absolute values by up to 8 °C for bottom waters and up to 16 °C for surface waters. Concerning the reconstruction of temperature using foraminiferal Mg / Ca ratios, contamination by authigenic coatings in the deeper intervals may have led to an overestimation of temperatures. Differences in results based on the lipid paleothermometers (long chain diol index and TEXL86) can partly be explained by the application of modern-day proxy calibrations to intervals that experienced significant changes in depositional settings: in the case of our study, the change from
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Wang, L.-C.; Behling, H.; Lee, T.-Q.; Li, H.-C.; Huh, C.-A.; Shiau, L.-J.; Chang, Y.-P.
2014-10-01
We reconstructed paleoenvironmental changes from a sediment archive of a lake in the floodplain of the Ilan Plain of NE Taiwan on multi-decadal resolution for the last ca. 1900 years. On the basis of pollen and diatom records, we evaluated past floods, typhoons, and agricultural activities in this area which are sensitive to the hydrological conditions in the western Pacific. Considering the high sedimentation rates with low microfossil preservations in our sedimentary record, multiple flood events were. identified during the period AD 100-1400. During the Little Ice Age phase 1 (LIA 1 - AD 1400-1620), the abundant occurrences of wetland plant (Cyperaceae) and diatom frustules imply less flood events under stable climate conditions in this period. Between AD 500 and 700 and the Little Ice Age phase 2 (LIA 2 - AD 1630-1850), the frequent typhoons were inferred by coarse sediments and planktonic diatoms, which represented more dynamical climate conditions than in the LIA 1. By comparing our results with the reconstructed changes in tropical hydrological conditions, we suggested that the local hydrology in NE Taiwan is strongly influenced by typhoon-triggered heavy rainfalls, which could be influenced by the variation of global temperature, the expansion of the Pacific warm pool, and the intensification of El Niño-Southern Oscillation (ENSO) events.
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Wu, Naiqin; Li, Fengjiang; Rousseau, Denis-Didier
2018-04-01
The terrestrial mollusk fossils found in Chinese loess strata have been studied for over one hundred years. However, the greatest progress in these studies has been made only in the last two decades. In this paper, we review the advancements, advantages and limitations of terrestrial mollusk studies in Chinese loess deposits. Improvements in research methods and approaches have allowed the extraction of more detailed paleoenvironmental and paleoclimatic information from mollusk assemblages. The broadened research scope and content have yielded many new findings and results. The mollusk record has thus become one of the most important proxies in the paleoenvironmental and paleoclimatic reconstruction of loess-paleosol sequences in China. The greatest progress in the studies of terrestrial mollusks in Chinese loess sequences can be summarized as follows: (1) modern mollusk assemblages can be classified into four ecotypes, based on their temperature and humidity requirements, including eurytopic, semi-aridiphilous and sub-humidiphilous, cold-aridiphilous, and thermo-humidiphilous types; (2) Quaternary mollusk assemblages can be modified into the following three ecological types: glacial loess, interglacial paleosol, and interstadial weakly-developed paleosol assemblages; (3) mollusk records successfully reveal long-term climatic and environmental changes reflective of the history of East Asian monsoonal variations since the Late Cenozoic, and the succession of mollusk species also indicate short-term environmental changes such as millennial climate variability during Last Glacial Maximum and unstable climatic fluctuations during glacial and interglacial periods; and (4) more recently, new analytical approaches have offered increased research potential in areas such as paleotemperature reconstruction using the isotopic compositions of modern and fossil mollusk shells, combined with higher accuracy 14C dating of Quaternary loess deposits, which will greatly improve
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Gallego, José Luis R; Ortiz, José E; Sierra, Carlos; Torres, Trinidad; Llamas, J F
2013-06-01
Trace element concentrations in the Roñanzas peat bog record reveal a contribution of natural processes but the influence of anthropogenic factors predominates in the last two millenniums, particularly aerosol deposition linked to mining and industrial activities in northern Spain. We observed that the Roñanzas record can be considered a preserved environment, suitable to search for local (major elements. Our study design represents a novel approach to assign natural vs. human contributions in peatlands. Therefore, synergies obtained by the simultaneous study of multivariate statistics and enrichment factors allow robust conclusions about paleoenvironmental evolution and human activities. Anthropogenic influence has also been reported in similar records in other parts of Europe, thereby suggesting large-scale sources for atmospheric pollution. However, here we revealed remarkable particularities, such as the association of Cd, Zn and Pb, mainly linked to regional and local factors (mining and more recently the metallurgical industry), whereas we propose that the occurrence of Hg is associated with a combination of regional factors and global atmospheric pollution. Copyright © 2013 Elsevier B.V. All rights reserved.
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EFFECTS OF HUMAN IMPACTS AND CLIMATE VARIATION ON FORESTS: THE RIETI BASIN SINCE MEDIEVAL TIME
Directory of Open Access Journals (Sweden)
S. Mensing
2013-03-01
Full Text Available A number of recent paleoenvironmental studies have argued that abrupt changes in climate have been the primary cause for societal collapse. Many social scientists, including anthropologists and environmental historians, reject environmental explanations as deterministic and overly simplistic. They argue that socio-political decisions contribute to environmental change and that efforts to study societal vulnerability within a human-environment system must include analysis of complex social structures. There is a gap in our understanding of how past societies responded to climate change because there are very few interdisciplinary studies that integrate both physical and behavioral sciences in paleoenvironmental reconstructions. While there is a general sense that modern societies are more insulated than pre-industrial societies from the effects of climate change, this may not prove to be true. A more complete understanding of how both natural and human-caused changes have affected the environment in the past can potentially guide decisions aimed at promoting future sustainability. Here we present a project funded by the United States National Science Foundation that will explicitly integrate paleoenvironmental reconstruction with socioeconomic history in a local context to identify linkages between social and environmental change associated with climate variability.
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EEG source reconstruction reveals frontal-parietal dynamics of spatial conflict processing
Cohen, M.X.; Ridderinkhof, K.R.
2013-01-01
Cognitive control requires the suppression of distracting information in order to focus on task-relevant information. We applied EEG source reconstruction via time-frequency linear constrained minimum variance beamforming to help elucidate the neural mechanisms involved in spatial conflict
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Touchan, Ramzi; Woodhouse, Connie A.; Meko, David M.; Allen, Craig D.
2011-01-01
Drought is a recurring phenomenon in the American Southwest. Since the frequency and severity of hydrologic droughts and other hydroclimatic events are of critical importance to the ecology and rapidly growing human population of this region, knowledge of long-term natural hydroclimatic variability is valuable for resource managers and policy-makers. An October–June precipitation reconstruction for the period AD 824–2007 was developed from multi-century tree-ring records of Pseudotsuga menziesii (Douglas-fir), Pinus strobiformis (Southwestern white pine) and Pinus ponderosa (Ponderosa pine) for the Jemez Mountains in Northern New Mexico. Calibration and verification statistics for the period 1896–2007 show a high level of skill, and account for a significant portion of the observed variance (>50%) irrespective of which period is used to develop or verify the regression model. Split-sample validation supports our use of a reconstruction model based on the full period of reliable observational data (1896–2007). A recent segment of the reconstruction (2000–2006) emerges as the driest 7-year period sensed by the trees in the entire record. That this period was only moderately dry in precipitation anomaly likely indicates accentuated stress from other factors, such as warmer temperatures. Correlation field maps of actual and reconstructed October–June total precipitation, sea surface temperatures and 500-mb geopotential heights show characteristics that are similar to those indicative of El Niño–Southern Oscillation patterns, particularly with regard to ocean and atmospheric conditions in the equatorial and north Pacific. Our 1184-year reconstruction of hydroclimatic variability provides long-term perspective on current and 20th century wet and dry events in Northern New Mexico, is useful to guide expectations of future variability, aids sustainable water management, provides scenarios for drought planning and as inputs for hydrologic models under a
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Late Quaternary paleoenvironmental records from the Chatanika River valley near Fairbanks (Alaska)
Schirrmeister, Lutz; Meyer, Hanno; Andreev, Andrei; Wetterich, Sebastian; Kienast, Frank; Bobrov, Anatoly; Fuchs, Margret; Sierralta, Melanie; Herzschuh, Ulrike
2016-09-01
Perennially-frozen deposits are considered as excellent paleoenvironmental archives similar to lacustrine, deep marine, and glacier records because of the long-term and good preservation of fossil records under stable permafrost conditions. A permafrost tunnel in the Vault Creek Valley (Chatanika River Valley, near Fairbanks) exposes a sequence of frozen deposits and ground ice that provides a comprehensive set of proxies to reconstruct the late Quaternary environmental history of Interior Alaska. The multi-proxy approach includes different dating techniques (radiocarbon-accelerator mass spectrometry [AMS 14C], optically stimulated luminescence [OSL], thorium/uranium radioisotope disequilibria [230Th/U]), as well as methods of sedimentology, paleoecology, hydrochemistry, and stable isotope geochemistry of ground ice. The studied sequence consists of 36-m-thick late Quaternary deposits above schistose bedrock. Main portions of the sequence accumulated during the early and middle Wisconsin periods. The lowermost unit A consists of about 9-m-thick ice-bonded fluvial gravels with sand and peat lenses. A late Sangamon (MIS 5a) age of unit A is assumed. Spruce forest with birch, larch, and some shrubby alder dominated the vegetation. High presence of Sphagnum spores and Cyperaceae pollen points to mires in the Vault Creek Valley. The overlying unit B consists of 10-m-thick alternating fluvial gravels, loess-like silt, and sand layers, penetrated by small ice wedges. OSL dates support a stadial early Wisconsin (MIS 4) age of unit B. Pollen and plant macrofossil data point to spruce forests with some birch interspersed with wetlands around the site. The following unit C is composed of 15-m-thick ice-rich loess-like and organic-rich silt with fossil bones and large ice wedges. Unit C formed during the interstadial mid-Wisconsin (MIS 3) and stadial late Wisconsin (MIS 2) as indicated by radiocarbon ages. Post-depositional slope processes significantly deformed both, ground
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Septal graft in laryngeal reconstruction
International Nuclear Information System (INIS)
Bahannan, Abdulrahman; Slavicek, A.; Taudy, M.; Chovanec, M.
2006-01-01
A 62-year-old woman presented with symptoms of dyspnea. Ultrasonography and computed tomography examinations revealed mass extending from the cricoid cartilage to the left lobe of thyroid gland and thyroid cartilage. Cytology revealed possibility of cartilaginous origin, which was proven to be chondrosarcoma (Grade 1) from the biopsy specimen obtained during panendosopy. She underwent one stage radical resection and immediate reconstruction of laryngeal skeleton defect by mucocartilaginous graft from the nasal septum. Her postoperative course was optimal with preservation of the laryngeal functions. Twenty-eight months postoperatively, she had to undergo total laryngectomy as a salvage procedure for the advanced local recurrence. We report on the relatively easy technique for functional reconstruction of the large laryngeal defect with the employment cartilage graft from the nasal septum. (author)
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Paleoenvironmental Implications of Clay Minerals at Yellowknife Bay, Gale Crater, Mars
Bristow, Thomas F.; Blake, David F.
2014-01-01
The Mars Science Laboratory (MSL) Rover, Curiosity spent approx 150 sols at Yellowknife Bay (YKB) studying a section of fluvio-lacustrine sedimentary rocks (with potential indications of volcanic influence), informally known as the Yellowknife Bay formation. YKB lies in a distal region of the Peace Vallis alluvial fan, which extends from the northern rim of Gale Crater toward the dune field at the base of Mt Sharp. Sedimentological and stratigraphic observations are consistent with the Yellowknife Bay formation being part of a distal fan deposit, which could be as young as middle Hesperian to even early Amazonian in age (approx. 3.5 to 2.5 Ga). The Yellowknife Bay formation hosts a unit of mudstone called the Sheepbed member. Curiosity obtained powdered rock samples from two drill holes in the Sheepbed Member, named John Klein and Cumberland, and delivered them to instruments in Curiosity. Data from CheMin, a combined X-ray diffraction (XRD)/X-ray fluorescence instrument (XRF), has allowed detailed mineralogical analysis of mudstone powders revealing a clay mineral component of approx. 20 wt.% in each sample. The clay minerals are important indicators of paleoenvironmental conditions and sensitive recorders of post-depositional alteration processes. The XRD pattern of John Klein reveals a 02l band consistent with a trioctahedral phyllosilicate. A broad peak at approx. 10A with a slight inflexion at approx. 12A indicates the presence of 2:1 type clay minerals in the John Klein sample. The trioctahedral nature of the clay minerals, breadth of the basal reflection, and presence of a minor component with larger basal spacing suggests that John Klein contains a trioctahedral smectite (probably saponite), whose interlayer is largely collapsed because of the low-humidity conditions. The XRD patterns show no evidence of corrensite (mixed-layer chlorite/smectite) or chlorite, which are typical diagenetic products of trioctahedral smectites when subjected to burial and
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Survival under stress : benthic foraminiferal patterns and Cenozoic biotic crises
Kouwenhoven, T.J.
2000-01-01
A principal conclusion of this thesis is, that benthic foraminifera are excellent recorders of paleoenvironments and paleoenvironmental change. Insight in their community structure, and changes in this through time, is still increasing and will add to their usefulness in the reconstruction of past
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Survival under stress : benthic foraminiferal patterns and Cenozoic biotic crises
Kouwenhoven, T.J.
2000-01-01
A principal conclusion of this thesis is, that benthic foraminifera are excellent recorders of paleoenvironments and paleoenvironmental change. Insight in their community structure, and changes in this through time, is still increasing and will add to their usefulness in the reconstruction of
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Bertini, Adele; Sadori, Laura; Combourieu-Nebout, Nathalie; Donders, Timme H.; Kouli, Katerina; Koutsodendris, Andreas; Joannin, Sébastien; Masi, Alessia; Mercuri, Anna Maria; Panagiotopoulos, Konstantinos; Peyron, Odile; Sinopoli, Gaia; Torri, Paola; Zanchetta, Giovanni; Francke, Alexander; Wagner, Bernd
2016-01-01
Lake Ohrid (Balkan peninsula) is the oldest European extant lake and one of the deepest and largest. Such a unique, terrestrial natural archive is especially relevant for both paleoenvironmental and paleoclimatic reconstructions but also for genetic studies. In the frame of the International
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Clark, K.; Berryman, K. R.; Cochran, U. A.; Bartholomew, T.; Turner, G. M.
2010-12-01
At Hokuri Creek, in south Westland, New Zealand, an 18 m thickness of Holocene sediments has accumulated against the upthrown side of the Alpine Fault. Recent fluvial incision has created numerous exposures of this sedimentary sequence. At a decimetre to metre scale there are two dominant types of sedimentary units: clastic-dominated, grey silt packages, and organic-dominated, light brown peaty-silt units. These units represent repeated alternations of the paleoenvironment due to fault rupture over the past 7000 years. We have located the event horizons within the sedimentary sequence, and identified evidence to support earthquake-driven paleoenvironmental change (rather than climatic variability), and developed a model of paleoenvironmental changes over a typical seismic cycle. To quantitatively characterise the sediments we use high resolution photography, x-ray imaging, magnetic-susceptibility and total carbon analysis. To understand the depositional environment we used diatom and pollen studies. The organic-rich units have very low magnetic susceptibility and density values, with high greyscale and high total carbon values. Diatoms indicate these units represent stable wetland environments with standing water and predominantly in-situ organic material deposition. The clastic-rich units are characterised by higher magnetic susceptibility and density values, with low greyscale and total carbon. The clastic-rich units represent environments of flowing water and deep pond settings that received predominantly catchment-derived silt and sand. The event horizon is located at the upper contact of the organic-rich horizons. The event horizon contact marks a drastic change in hydrologic regime as fault rupture changed the stream base level and there was a synchronous influx of clastic sediment as the catchment responded to earthquake shaking. During the interseismic period the flowing-water environment gradually stabilised and returned to an organic-rich wetland. Such
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Nguyen, Hung T. T.; Galelli, Stefano
2018-03-01
Catchment dynamics is not often modeled in streamflow reconstruction studies; yet, the streamflow generation process depends on both catchment state and climatic inputs. To explicitly account for this interaction, we contribute a linear dynamic model, in which streamflow is a function of both catchment state (i.e., wet/dry) and paleoclimatic proxies. The model is learned using a novel variant of the Expectation-Maximization algorithm, and it is used with a paleo drought record—the Monsoon Asia Drought Atlas—to reconstruct 406 years of streamflow for the Ping River (northern Thailand). Results for the instrumental period show that the dynamic model has higher accuracy than conventional linear regression; all performance scores improve by 45-497%. Furthermore, the reconstructed trajectory of the state variable provides valuable insights about the catchment history—e.g., regime-like behavior—thereby complementing the information contained in the reconstructed streamflow time series. The proposed technique can replace linear regression, since it only requires information on streamflow and climatic proxies (e.g., tree-rings, drought indices); furthermore, it is capable of readily generating stochastic streamflow replicates. With a marginal increase in computational requirements, the dynamic model brings more desirable features and value to streamflow reconstructions.
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Directory of Open Access Journals (Sweden)
Cátia Pereira dos Santos
2015-09-01
Full Text Available AbstractThe Maricá restinga, located in the eastern part of the Rio de Janeiro State (Brazil, corresponds to one of the few remaining preserved areas of the state's coastal plain. This paper reports on a study of the Maricá restinga plant communities and also presents an identification of the main plant species present in each community, with the objective of establishing reference collections, by the methods of the proxies opal phytoliths and stable carbon isotopes, for paleoenvironmental reconstructions of this coastal area during the Quaternary. Six plant communities, distributed perpendicularly to the coast line over sandy barriers, lagoonal plain, lagoon margin and weathered basement were identified: halophile-psamophile, scrub, herbaceous swamp, slack, shrubby vegetation and dry forest. In general, the plant species analyzed in each community presented low productivity of opal phytoliths, as only the Poaceae, Cyperaceae and Arecaceae families produce a great amount and diversity of morphotypes of opal phytoliths. The results of the analysis of stable carbon isotopes in sediments indicated a predominance of C3 or a mixture of C3 and C4 plants, presenting a close correlation with the results found in plants collected in each community. In conclusion, it was verified that the carbon isotope analysis associated with that of the opal phytoliths are good proxies for the reconstruction of vegetation in the study area.
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Fantasia, Alicia; Föllmi, Karl B.; Adatte, Thierry; Spangenberg, Jorge E.; Montero-Serrano, Jean-Carlos
2018-03-01
Paleoenvironmental and paleoclimatic change associated with the Toarcian oceanic anoxic event (T-OAE) was evaluated in five successions located in Switzerland. They represent different paleogeographic settings across the Alpine Tethys: the northern shelf (Gipf, Riniken and Rietheim), the Sub-Briançonnais basin (Creux de l'Ours), and the Lombardian basin (Breggia). The multi-proxy approach chosen (whole-rock and clay mineralogy, phosphorus, major and trace elements) shows that local environmental conditions modulated the response to the T-OAE across the Alpine Tethys. On the northern shelf and in the Sub-Briançonnais basin, high kaolinite contents and detrital proxies (detrital index, Ti, Zr, Si) in the T-OAE interval suggest a change towards a warmer and more humid climate coupled with an increase in the chemical weathering rates. In contrast, low kaolinite content in the Lombardian basin is likely related to a more arid climate along the southern Tethys margin and/or to a deeper and more distal setting. Redox-sensitive trace-element (V, Mo, Cu, Ni) enrichments in the T-OAE intervals reveal that dysoxic to anoxic conditions developed on the northern shelf, whereas reducing conditions were less severe in the Sub-Briançonnais basin. In the Lombardian basin well-oxygenated bottom water conditions prevailed. Phosphorus (P) speciation analysis was performed at Riniken and Creux de l'Ours. This is the first report of P speciation data for T-OAE sections, clearly suggesting that high P contents during this time interval are mainly linked to the presence of an authigenic phases and fish remains. The development of oxygen-depleted conditions during the T-OAE seems to have promoted the release of the organic-bound P back into the water column, thereby further sustaining primary productivity in a positive feedback loop.
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GLOBAL JOURNAL OF GEOLOGICAL SCIENCE (ISSN 1596 – 6798)
African Journals Online (AJOL)
Ada Global
studied for paleodepositional reconstruction using pebble morphometry. Two types of pebbles were observed in the area; quartzose and mudrock pebbles. .... Not withstanding the few limitations of the use of pebble morphometry in paleoenvironmental diagnoses, it has proven to be an excellent tool for deciphering that.
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EEG source reconstruction reveals frontal-parietal dynamics of spatial conflict processing
Cohen, M.X.; Ridderinkhof, K.R.
2013-01-01
Cognitive control requires the suppression of distracting information in order to focus on task-relevant information. We applied EEG source reconstruction via time-frequency linear constrained minimum variance beamforming to help elucidate the neural mechanisms involved in spatial conflict processing. Human subjects performed a Simon task, in which conflict was induced by incongruence between spatial location and response hand. We found an early (?200 ms post-stimulus) conflict modulation in ...
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Wagner, B.; Bennike, O.; Bos, J.A.A.; Cremer, H.; Lotter, A.F.; Melles, M.
2008-01-01
Two sediment cores of 70 and 252 cm length were recovered from Hjort Sø, a small lake on Store Koldewey, Northeast Greenland, and studied with a multidisciplinary approach in order to reconstruct the local environmental history and to test the relevance of proxies for paleoenvironmental information.
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Fouinat , Laurent
2016-01-01
This doctoral thesis aims to a paleo-environmental reconstitution of the Oisans valley based on the natural archive of lake sediments. From a multi-proxy approach, we aim to reconstruct: i) Glacial fluctuation reconstruction in Oisans valley; ii) human activities evolution in mountain area and their influences on sediment fluxes especially during extreme events; iii)understand the relationship between climate change, use of mountain lands and natural hazard.Through this study, we identified p...
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Post-Glacial and Paleo-Environmental History of the West Coast of Vancouver Island
Dallimore, A.; Enkin, R. J.
2005-12-01
Annually laminated sediments in anoxic fjords are potentially ideal paleoclimate recorders, particularly once proxy measurements for atmospheric, oceanographic and sedimentological conditions have been calibrated. On the west coast of Canada, these sediments also record the changing environment as glaciers retreated from this area about 12 ka y BP. In Effingham Inlet, a 40 m core taken from the French ship the Marion Dufresne as part of the international IMAGES/PAGES program, gives evidence of an isolation basin at maximum glacial isostatic rebound and lowest paleo-sea level followed by eustatic sea level rise about 10 ka y BP. The Late Pleistocene record also marks dramatic changes in glacial sedimentary source and transport. Excellent chronological control is provided by complementary yet independent dating methods including radiocarbon dates on both plants and shells, identification of the Mazama Ash, varve counting and paleomagnetic, paleosecular variation correlations in the lower, pro-glacial section of the core which does not contain organic material. Paleoenvironmental evidence from this core provides information on immediate post-glacial conditions along the coast and rapid climatic changes throughout the Holocene, with implications for the possibility of early human migration routes and refugia.
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Hu, Wei; Lin, Lin; Yang, Chao
2015-12-21
With the help of our recently developed massively parallel DGDFT (Discontinuous Galerkin Density Functional Theory) methodology, we perform large-scale Kohn-Sham density functional theory calculations on phosphorene nanoribbons with armchair edges (ACPNRs) containing a few thousands to ten thousand atoms. The use of DGDFT allows us to systematically achieve a conventional plane wave basis set type of accuracy, but with a much smaller number (about 15) of adaptive local basis (ALB) functions per atom for this system. The relatively small number of degrees of freedom required to represent the Kohn-Sham Hamiltonian, together with the use of the pole expansion the selected inversion (PEXSI) technique that circumvents the need to diagonalize the Hamiltonian, results in a highly efficient and scalable computational scheme for analyzing the electronic structures of ACPNRs as well as their dynamics. The total wall clock time for calculating the electronic structures of large-scale ACPNRs containing 1080-10,800 atoms is only 10-25 s per self-consistent field (SCF) iteration, with accuracy fully comparable to that obtained from conventional planewave DFT calculations. For the ACPNR system, we observe that the DGDFT methodology can scale to 5000-50,000 processors. We use DGDFT based ab initio molecular dynamics (AIMD) calculations to study the thermodynamic stability of ACPNRs. Our calculations reveal that a 2 × 1 edge reconstruction appears in ACPNRs at room temperature.
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Soil-landscape development and late Quaternary environmental change in coastal Estremadura, Portugal
Daniels, Michael; Haws, Jonathan; Benedetti, Michael; Bicho, Nuno
2015-04-01
This poster integrates soil-landscape analysis with archaeological survey and paleoenvironmental reconstruction. Soils in surface and buried contexts in Estremadura, Portugal, provide evidence of landscape stability and instability, relative age relationships between landforms, and general paleoenvironmental conditions during the late Quaternary. These factors provide insight into the distribution and condition of Paleolithic archaeological sites and help understand the record of human settlement in the region. Late Pleistocene and Holocene dunes extend inland approximately 10 km from coastal source regions. Surface soils in Holocene dunes under maritime pine (Pinus pinaster) forest exhibit A, E, C/Bh and A, C horizon sequences and classify as Quartzipsamments. Surface soils in late Pleistocene dunes exhibit A, E, Bh, Bhs, Bs horizon sequences and classify as Haplorthods. Both Pleistocene and Holocene dunes commonly bury a heavily weathered soil formed in calcareous sandstone. The boundary between underlying buried soils and overlying surface soils is characterized by a lag deposit of medium to coarse, moderately-rounded gravels, underlain immediately by subsurface Bt and Bss horizons. The lag deposit and absence of buried A horizons both indicate intense and/or prolonged surface erosion prior to burial by late Quaternary dunes. Soil-geomorphic relationships therefore suggest at least two distinct episodes of dune emplacement and subsequent landscape stability following an extensive episode late Pleistocene landscape instability and soil erosion. A conceptual model of soil-landscape evolution through the late Quaternary and Holocene results from the integration of soil profile data, proxy paleoenvironmental data, and the partial record of human settled as revealed in the archaeological record.
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Directory of Open Access Journals (Sweden)
U. Kotthoff
2017-12-01
Full Text Available Sediment records recovered from the Baltic Sea during Integrated Ocean Drilling Program Expedition 347 provide a unique opportunity to study paleoenvironmental and climate change in central and northern Europe. Such studies contribute to a better understanding of how environmental parameters change in continental shelf seas and enclosed basins. Here we present a multi-proxy-based reconstruction of paleotemperature (both marine and terrestrial, paleosalinity, and paleoecosystem changes from the Little Belt (Site M0059 over the past ∼ 8000 years and evaluate the applicability of inorganic- and organic-based proxies in this particular setting. All salinity proxies (diatoms, aquatic palynomorphs, ostracods, diol index show that lacustrine conditions occurred in the Little Belt until ∼ 7400 cal yr BP. A connection to the Kattegat at this time can thus be excluded, but a direct connection to the Baltic Proper may have existed. The transition to the brackish–marine conditions of the Littorina Sea stage (more saline and warmer occurred within ∼ 200 years when the connection to the Kattegat became established after ∼ 7400 cal yr BP. The different salinity proxies used here generally show similar trends in relative changes in salinity, but often do not allow quantitative estimates of salinity. The reconstruction of water temperatures is associated with particularly large uncertainties and variations in absolute values by up to 8 °C for bottom waters and up to 16 °C for surface waters. Concerning the reconstruction of temperature using foraminiferal Mg / Ca ratios, contamination by authigenic coatings in the deeper intervals may have led to an overestimation of temperatures. Differences in results based on the lipid paleothermometers (long chain diol index and TEXL86 can partly be explained by the application of modern-day proxy calibrations to intervals that experienced significant
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["Long-branch Attraction" artifact in phylogenetic reconstruction].
Li, Yi-Wei; Yu, Li; Zhang, Ya-Ping
2007-06-01
Phylogenetic reconstruction among various organisms not only helps understand their evolutionary history but also reveal several fundamental evolutionary questions. Understanding of the evolutionary relationships among organisms establishes the foundation for the investigations of other biological disciplines. However, almost all the widely used phylogenetic methods have limitations which fail to eliminate systematic errors effectively, preventing the reconstruction of true organismal relationships. "Long-branch Attraction" (LBA) artifact is one of the most disturbing factors in phylogenetic reconstruction. In this review, the conception and analytic method as well as the avoidance strategy of LBA were summarized. In addition, several typical examples were provided. The approach to avoid and resolve LBA artifact has been discussed.
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A Taxonomic Reduced-Space Pollen Model for Paleoclimate Reconstruction
Wahl, E. R.; Schoelzel, C.
2010-12-01
Paleoenvironmental reconstruction from fossil pollen often attempts to take advantage of the rich taxonomic diversity in such data. Here, a taxonomically "reduced-space" reconstruction model is explored that would be parsimonious in introducing parameters needing to be estimated within a Bayesian Hierarchical Modeling context. This work involves a refinement of the traditional pollen ratio method. This method is useful when one (or a few) dominant pollen type(s) in a region have a strong positive correlation with a climate variable of interest and another (or a few) dominant pollen type(s) have a strong negative correlation. When, e.g., counts of pollen taxa a and b (r >0) are combined with pollen types c and d (r logistic generalized linear model (GLM). The GLM can readily model this relationship in the forward form, pollen = g(climate), which is more physically realistic than inverse models often used in paleoclimate reconstruction [climate = f(pollen)]. The specification of the model is: rnum Bin(n,p), where E(r|T) = p = exp(η)/[1+exp(η)], and η = α + β(T); r is the pollen ratio formed as above, rnum is the ratio numerator, n is the ratio denominator (i.e., the sum of pollen counts), the denominator-specific count is (n - rnum), and T is the temperature at each site corresponding to a specific value of r. Ecological and empirical screening identified the model (Spruce+Birch) / (Spruce+Birch+Oak+Hickory) for use in temperate eastern N. America. α and β were estimated using both "traditional" and Bayesian GLM algorithms (in R). Although it includes only four pollen types, the ratio model yields more explained variation ( 80%) in the pollen-temperature relationship of the study region than a 64-taxon modern analog technique (MAT). Thus, the new pollen ratio method represents an information-rich, reduced space data model that can be efficiently employed in a BHM framework. The ratio model can directly reconstruct past temperature by solving the GLM equations
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International Nuclear Information System (INIS)
Saldarriaga, Andrea; Torres, Martinez Jose Ignacio.
2010-01-01
Littoral macrophytes from the La Fe reservoir (El Retiro, Antioquia) were sampled for ostracoda during June and September of 2008. This allowed the identification of four genera and six species of ostracoda belonging to the Cyprididae and Candonidae families, where Chlamydotheca and Cypridopsis were found to be the dominant genera. Chlamydotheca unispinosa was the most abundant species in the assemblage. Furthermore, the environmental variables: temperature, electric conductivity, dissolved oxygen, and pH were also measured, in order to establish their relation to ostracoda taxa, using Canonical Correspondence Analysis (CCA). Results confirm the cosmopolitan character of Cypridopsis vidua and evidence the importance of plant substrate on the occurrence and distribution of the Cyprididae family. The possible application of the recorded ostracoda assemblage in paleoenvironmental interpretations is discussed.
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DEFF Research Database (Denmark)
Friis, Ida; Sjulstok, Emil; Solov'yov, Ilia A
2017-01-01
is supposedly facilitated through an iron rich polymer complex which couples to multiple cryptochromes. The present investigation aims to independently reconstruct this complex and describe its interaction with Drosophila melanogaster cryptochromes. The polymer complex consists of ISCA1 protein monomers...
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Direct iterative reconstruction of computed tomography trajectories (DIRECTT)
International Nuclear Information System (INIS)
Lange, A.; Hentschel, M.P.; Schors, J.
2004-01-01
The direct reconstruction approach employs an iterative procedure by selection of and angular averaging over projected trajectory data of volume elements. This avoids the blur effects of the classical Fourier method due to the sampling theorem. But longer computing time is required. The reconstructed tomographic images reveal at least the spatial resolution of the radiation detector. Any set of projection angles may be selected for the measurements. Limited rotation of the object yields still good reconstruction of details. Projections of a partial region of the object can be reconstructed without additional artifacts thus reducing the overall radiation dose. Noisy signal data from low dose irradiation have low impact on spatial resolution. The image quality is monitored during all iteration steps and is pre-selected according to the specific requirements. DIRECTT can be applied independently from the measurement equipment in addition to conventional reconstruction or as a refinement filter. (author)
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Sensation Following Immediate Breast Reconstruction with Implants.
Lagergren, Jakob; Wickman, Marie; Hansson, Per
2010-01-01
Sensation is a neglected aspect of the outcome of breast reconstructions with implants. The aim of this prospective study was to evaluate the cutaneous somatosensory status in breasts following mastectomy and immediate reconstruction with permanent adjustable prostheses and to analyze the patients' subjective experience of the sensation. Twenty-four consecutive patients diagnosed with invasive or in situ breast carcinoma were examined preoperatively and 2 years after mastectomy and reconstruction, for assessment of perception thresholds for touch, cold, warmth, and heat pain above and below the areola. Von Frey filaments and a Peltier element-based thermode were used. The patients completed a questionnaire concerning their experienced sensation in the reconstructed breast. Using quantitative somato-sensory testing, the sensation to all the examined modalities was significantly impaired compared to preoperatively. Most affected was the area above the areola. Patients given postoperative radiotherapy (n = 9) did not differ from those without radiotherapy (n = 15) regarding any of the modalities. All patients reported reduced sensation in the reconstructed breast compared to that preoperatively. Twenty-three patients stated that the reconstructed breast felt different from the other breast; nevertheless 16 reported that the reconstructed breast felt like a real breast. The study revealed sensation impairment following mastectomy and immediate reconstruction with implants. Patients should be informed about this effect preoperatively to allow adequate expectations regarding the sensation outcome. However, two-thirds of the study patients considered that the reconstructed breast felt like a real breast, which must be one of the main purposes of a breast reconstruction.
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Cederna, P S; Yates, W R; Chang, P; Cram, A E; Ricciardelli, E J
1995-11-01
Over 40,000 postmastectomy breast reconstructions are performed annually. In this study, we investigated the psychosocial, functional, and cosmetic effects of transverse rectus abdominis musculocutaneous (TRAM) flap versus breast implant reconstruction. Thirty-three women who had undergone postmastectomy breast reconstruction were contacted by telephone and agreed to participate in the study. Twenty-two women completed the self-assessment questionnaires regarding their quality of life, psychological symptoms, functional status, body image, and global satisfaction. The TRAM and implant groups contained 8 and 14 patients, respectively. The groups were well matched for age, employment status, marital status, race, religion, and severity of medical and surgical illnesses. The average follow-up was 36 months. Statistical analysis of the responses revealed that women who had undergone TRAM flap reconstruction were more satisfied with how their reconstructed breast felt to the touch (p = .01), and there was a trend toward greater satisfaction with the appearance of their reconstructed breast (p = .08). However, these same patients identified more difficulties as far as functioning at work or school, performing vigorous physical activities, participating in community or religious activities, visiting with relatives, and interacting with male friends (p physical impairments as a result of their reconstruction.
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2014-01-01
Background Following transmission, HIV-1 evolves into a diverse population, and next generation sequencing enables us to detect variants occurring at low frequencies. Studying viral evolution at the level of whole genomes was hitherto not possible because next generation sequencing delivers relatively short reads. Results We here provide a proof of principle that whole HIV-1 genomes can be reliably reconstructed from short reads, and use this to study the selection of immune escape mutations at the level of whole genome haplotypes. Using realistically simulated HIV-1 populations, we demonstrate that reconstruction of complete genome haplotypes is feasible with high fidelity. We do not reconstruct all genetically distinct genomes, but each reconstructed haplotype represents one or more of the quasispecies in the HIV-1 population. We then reconstruct 30 whole genome haplotypes from published short sequence reads sampled longitudinally from a single HIV-1 infected patient. We confirm the reliability of the reconstruction by validating our predicted haplotype genes with single genome amplification sequences, and by comparing haplotype frequencies with observed epitope escape frequencies. Conclusions Phylogenetic analysis shows that the HIV-1 population undergoes selection driven evolution, with successive replacement of the viral population by novel dominant strains. We demonstrate that immune escape mutants evolve in a dependent manner with various mutations hitchhiking along with others. As a consequence of this clonal interference, selection coefficients have to be estimated for complete haplotypes and not for individual immune escapes. PMID:24996694
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Ovsepyan, Y.; Tikhonova, A.; Novichkova, E.; Gupta, R. M.; Korsun, S.; Matul, A.
2017-12-01
In order to reconstruct the history of water mass interaction between the North Atlantic and the Nordic Seas since MIS 3 to the present, the sediment core from the North-East Scotland continental slope was investigated. The site of core AI-3521 (59°30.009 N, 7°20.062 E) from the 1051 m water depth is located beneath the pathway of the North Atlantic current which transports warm and saline Atlantic surface water to the Norwegian Sea. The age model of the sequence is based on stable isotope record of benthic Cassidulina neoteretis and planktic Neogloboquadrina pachyderma sin. and Globigerina bulloides. The Holocene interval of the upper 1.5 m is characterized by high sedimentation rates and the high biodiversity of microfauna. The distribution of ice rafted debris and CaCO3 content; benthic and planktic foraminiferal assemblages; oxygen, carbon and boron isotopes, Mg/Ca ratio were used to reconstruct the regional paleoceanographic conditions (bioproductivity, temperature, salinity) and to compare with the paleoclimatic events in the subpolar North Atlantic in the frame of the global environmental changes during the Late Pleistocene and Holocene. The research was supported by Russian Science Foundation projects 16-47-02009 and 14-50-00095.
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Reconstruction Algorithms in Undersampled AFM Imaging
DEFF Research Database (Denmark)
Arildsen, Thomas; Oxvig, Christian Schou; Pedersen, Patrick Steffen
2016-01-01
This paper provides a study of spatial undersampling in atomic force microscopy (AFM) imaging followed by different image reconstruction techniques based on sparse approximation as well as interpolation. The main reasons for using undersampling is that it reduces the path length and thereby...... the scanning time as well as the amount of interaction between the AFM probe and the specimen. It can easily be applied on conventional AFM hardware. Due to undersampling, it is then necessary to further process the acquired image in order to reconstruct an approximation of the image. Based on real AFM cell...... images, our simulations reveal that using a simple raster scanning pattern in combination with conventional image interpolation performs very well. Moreover, this combination enables a reduction by a factor 10 of the scanning time while retaining an average reconstruction quality around 36 dB PSNR...
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The values of MSCT multi-planar reconstruction in the diagnosis of lumbar spondylolysis
International Nuclear Information System (INIS)
Tan Qixuan; Zhu Gangming; Qian Huirong; Zhong Sheng
2007-01-01
Objective: To study the reasonable schedule and diagnostic values of MSCT multi-planar reconstruction in patients with lumbar spondylolysis. Methods: Volume scan ranging from T12 to S1 was done in 540 cases suffered from backleg pain without definite trauma. The lumbar disc axial and whole lumbar axial, sagital, coronal images were reconstructed from raw data of MSCT. Results: Of the 540 cases, 54 spondylolysis in isthmus of lumbar pedicle were demonstrated in 29 ones (29/540, 5.37%). 20 cases were accompanied with spondylolisthesis. The sagital multi-planar reconstruction was the best way to reveal the fissures of spondylolysis and accompanying abnormalities. The detectable ratio of fissures in lumbar disc with axial, whole lumbar axial, sagital and coronal multi-planer reconstruction images were 7.41%, 100%, 100% and 51.85% respectively. Conclusions: MSCT sagital multi-planar reconstruction is the best images to reveal the fissures of spondylolysis. It should be taken as routine item in MSCT examination for the patients with lower back pain. (authors)
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Climate oscillations reflected within the microbiome of Arabian Sea sediments
Orsi, William D.; Coolen, Marco J. L.; Wuchter, Cornelia; He, Lijun; More, Kuldeep D.; Irigoien, Xabier; Chust, Guillem; Johnson, Carl; Hemingway, Jordon D.; Lee, Mitchell; Galy, Valier; Giosan, Liviu
2017-01-01
Selection of microorganisms in marine sediment is shaped by energy-yielding electron acceptors for respiration that are depleted in vertical succession. However, some taxa have been reported to reflect past depositional conditions suggesting they have experienced weak selection after burial. In sediments underlying the Arabian Sea oxygen minimum zone (OMZ), we performed the first metagenomic profiling of sedimentary DNA at centennial-scale resolution in the context of a multi-proxy paleoclimate reconstruction. While vertical distributions of sulfate reducing bacteria and methanogens indicate energy-based selection typical of anoxic marine sediments, 5–15% of taxa per sample exhibit depth-independent stratigraphies indicative of paleoenvironmental selection over relatively short geological timescales. Despite being vertically separated, indicator taxa deposited under OMZ conditions were more similar to one another than those deposited in bioturbated intervals under intervening higher oxygen. The genomic potential for denitrification also correlated with palaeo-OMZ proxies, independent of sediment depth and available nitrate and nitrite. However, metagenomes revealed mixed acid and Entner-Dourdoroff fermentation pathways encoded by many of the same denitrifier groups. Fermentation thus may explain the subsistence of these facultatively anaerobic microbes whose stratigraphy follows changing paleoceanographic conditions. At least for certain taxa, our analysis provides evidence of their paleoenvironmental selection over the last glacial-interglacial cycle.
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Climate oscillations reflected within the microbiome of Arabian Sea sediments
Orsi, William D.
2017-07-14
Selection of microorganisms in marine sediment is shaped by energy-yielding electron acceptors for respiration that are depleted in vertical succession. However, some taxa have been reported to reflect past depositional conditions suggesting they have experienced weak selection after burial. In sediments underlying the Arabian Sea oxygen minimum zone (OMZ), we performed the first metagenomic profiling of sedimentary DNA at centennial-scale resolution in the context of a multi-proxy paleoclimate reconstruction. While vertical distributions of sulfate reducing bacteria and methanogens indicate energy-based selection typical of anoxic marine sediments, 5–15% of taxa per sample exhibit depth-independent stratigraphies indicative of paleoenvironmental selection over relatively short geological timescales. Despite being vertically separated, indicator taxa deposited under OMZ conditions were more similar to one another than those deposited in bioturbated intervals under intervening higher oxygen. The genomic potential for denitrification also correlated with palaeo-OMZ proxies, independent of sediment depth and available nitrate and nitrite. However, metagenomes revealed mixed acid and Entner-Dourdoroff fermentation pathways encoded by many of the same denitrifier groups. Fermentation thus may explain the subsistence of these facultatively anaerobic microbes whose stratigraphy follows changing paleoceanographic conditions. At least for certain taxa, our analysis provides evidence of their paleoenvironmental selection over the last glacial-interglacial cycle.
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Digital reconstruction of Young's fringes using Fresnel transformation
Kulenovic, Rudi; Song, Yaozu; Renninger, P.; Groll, Manfred
1997-11-01
This paper deals with the digital numerical reconstruction of Young's fringes from laser speckle photography by means of the Fresnel-transformation. The physical model of the optical reconstruction of a specklegram is a near-field Fresnel-diffraction phenomenon which can be mathematically described by the Fresnel-transformation. Therefore, the interference phenomena can be directly calculated by a microcomputer.If additional a CCD-camera is used for specklegram recording the measurement procedure and evaluation process can be completely carried out in a digital way. Compared with conventional laser speckle photography no holographic plates, no wet development process and no optical specklegram reconstruction are needed. These advantages reveal a wide future in scientific and engineering applications. The basic principle of the numerical reconstruction is described, the effects of experimental parameters of Young's fringes are analyzed and representative results are presented.
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Kim, Hyungjin; Park, Chang Min; Lee, Myunghee; Park, Sang Joon; Song, Yong Sub; Lee, Jong Hyuk; Hwang, Eui Jin; Goo, Jin Mo
2016-01-01
To identify the impact of reconstruction algorithms on CT radiomic features of pulmonary tumors and to reveal and compare the intra- and inter-reader and inter-reconstruction algorithm variability of each feature. Forty-two patients (M:F = 19:23; mean age, 60.43±10.56 years) with 42 pulmonary tumors (22.56±8.51mm) underwent contrast-enhanced CT scans, which were reconstructed with filtered back projection and commercial iterative reconstruction algorithm (level 3 and 5). Two readers independently segmented the whole tumor volume. Fifteen radiomic features were extracted and compared among reconstruction algorithms. Intra- and inter-reader variability and inter-reconstruction algorithm variability were calculated using coefficients of variation (CVs) and then compared. Among the 15 features, 5 first-order tumor intensity features and 4 gray level co-occurrence matrix (GLCM)-based features showed significant differences (palgorithms. As for the variability, effective diameter, sphericity, entropy, and GLCM entropy were the most robust features (CV≤5%). Inter-reader variability was larger than intra-reader or inter-reconstruction algorithm variability in 9 features. However, for entropy, homogeneity, and 4 GLCM-based features, inter-reconstruction algorithm variability was significantly greater than inter-reader variability (palgorithms. Inter-reconstruction algorithm variability was greater than inter-reader variability for entropy, homogeneity, and GLCM-based features.
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Berthelot, M.; Nony, N.; Gugi, L.; Bishop, A.; De Luca, L.
2015-02-01
The history and identity of the Avignon's bridge is inseparable from that of the Rhône river. Therefore, in order to share the history and memory of the Rhône, it is essential to get to know this bridge and especially to identify and make visible the traces of its past, its construction, its interaction with the river dynamics, which greatly influenced his life. These are the objectives of the PAVAGE project that focuses on digitally surveying, modelling and re-visiting a heritage site of primary importance with the aim of virtually restoring the link between the two sides which, after the disappearance of the Roman bridge of Arles, constituted for a long time the only connection between Lyon or Vienna and the sea. Therefore, this project has an important geo-historical dimension for which geo-morphological and paleoenvironmental studies were implemented in connection with the latest digital simulation methods exploiting geographic information systems. By integrating knowledge and reflections of archaeologists, historians, geomorphologists, environmentalists, architects, engineers and computer scientists, the result of this project (which involved 5 laboratories during 4 years) is a 3D digital model covering an extension of 50 km2 achieved by integrating satellite imagery, UAV-based acquisitions, terrestrial laser scanning and photogrammetry, etc. Beyond the actions of scientific valorisation concerning the historical and geomorphological dimensions of the project, the results of this work of this interdisciplinary investigation and interpretation of this site are today integrated within a location-based augmented reality application allowing tourists to exploring the virtual reconstruction of the bridge and its environment through tablets inside the portion of territory covered by this project (between Avignon and Villeneuve-lez-Avignon). This paper presents the main aspects of the 3D virtual reconstruction approach.
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Digital holographic reconstruction detection of localized corrosion arising from scratches
Directory of Open Access Journals (Sweden)
LIANG WANG
2010-04-01
Full Text Available In this study, electrochemical methods and the digital holographic reconstruction technique were combined to detect the localized scratch-induced corrosion process of Alloy 690 in 0.50 mol dm-3 H2SO4 containing 0.10 mol dm-3 NaCl. The numerical reconstruction method has been proved to be an effective technique to detect changes of solution concentration. One can obtain direct information from the reconstructed images and capture subtle more revealing changes. It provides a method to detect localized corrosion arising from scratches.
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Shredded banknotes reconstruction using AKAZE points.
Nabiyev, Vasif V; Yılmaz, Seçkin; Günay, Asuman; Muzaffer, Gül; Ulutaş, Güzin
2017-09-01
Shredded banknote reconstruction is a recent topic and can be viewed as solving large-scale jigsaw puzzles. Also, problems such as reconstruction of fragmented documents, photographs and historical artefacts are closely related with this topic. The high computational complexity of these problems increases the need for the development of new methods Reconstruction of shredded banknotes consists of three main stages. (1) Matching fragments with a reference banknote. (2) Aligning the fragments by rotating at certain angles. (3) Assembling the fragments. The existing methods can successfully applied to synthetic banknote fragments which are created in computer environment. But when real banknote reconstruction problem is considered, different sub problems arise and make the existing methods inadequate. In this study, a keypoint based method, named AKAZE, was used to make the matching process effective. This is the first study that uses the AKAZE method in the reconstruction of shredded banknotes. A new method for fragment alignment has also been proposed. In this method, the convex hulls that contain all true matched AKAZE keypoints were found on reference banknote and fragments. The orientations of fragments were estimated accurately by comparing these convex polygons. Also, a new criterion was developed to reveal the success rates of reconstructed banknotes. In addition, two different data sets including real and synthetic banknote fragments of different countries were created to test the success of proposed method. Copyright © 2017 Elsevier B.V. All rights reserved.
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Yang, H.; Leng, Q.
2004-12-01
The degradation and preservation of biomolecules in plant tissues not only affects the inference on paleoecology of ancient plants but also bears significance in the interpretation of paleoenvironmental signals. Using a combined SEM and geochemical approach, we are able to show the source, liability, and preservation of structural biopolymers from morphologically well-preserved Metasequoia tissues from three Tertiary deposits. We detected a continuum of biomolecular preservation in this evolutionarily-conserved conifer. Pyrolysis-gas chromatography-mass spectrometry (Py-GC-MS) was applied to solvent-extracted residues from both fossil leaf and wood remains in comparison with tissues from their living counterparts. The late Paleocene-early Eocene leaves from Ellesmere Island, Canadian Arctic Archipelago, exhibit the best quality of biochemical preservation and show pyrolysis products derived from labile biomolecules characterized by large amounts of polysaccharides. These labile biomolecules are the oldest record of these kinds so far characterized by the pyrolysis technology. The middle Eocene leaf tissues from Axel Heiberg Island, Canadian Arctic Archipelago, yielded slightly lesser amounts of polysaccharide moieties, but the lignin products are similar to those identified from the Ellesmere Island fossils. Compared with these Arctic materials, the Metasequoia leaves from Miocene Clarkia, Idaho, USA, show the lowest quality of molecular preservation, characterized by a dramatic reduction of polysaccharides. This continuum of relative quality of biomolecular preservation is further confirmed by SEM observations of transverse sections of these fossil leaves. The investigation revealed tissue-specific degradation, and our data support the in-situ polymerization hypothesis for the origin of long-chain homologous pairs of aliphatic n-alk-1-enes/n-alkanes as leaf alteration products. The preferential degradation and selective removal of polysaccharides may be
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The structure of reconstructed chalcopyrite surfaces
Thinius, Sascha; Islam, Mazharul M.; Bredow, Thomas
2018-03-01
Chalcopyrite (CuFeS2) surfaces are of major interest for copper exploitation in aqueous solution, called leaching. Since leaching is a surface process knowledge of the surface structure, bonding pattern and oxidation states is important for improving the efficiency. At present such information is not available from experimental studies. Therefore a detailed computational study of chalcopyrite surfaces is performed. The structures of low-index stoichiometric chalcopyrite surfaces {hkl} h, k, l ∈ {0, 1, 2} have been studied with density functional theory (DFT) and global optimization strategies. We have applied ab initio molecular dynamics (MD) in combination with simulated annealing (SA) in order to explore possible reconstructions via a minima hopping (MH) algorithm. In almost all cases reconstruction involving substantial rearrangement has occurred accompanied by reduction of the surface energy. The analysis of the change in the coordination sphere and migration during reconstruction reveals that S-S dimers are formed on the surface. Further it was observed that metal atoms near the surface move toward the bulk forming metal alloys passivated by sulfur. The obtained surface energies of reconstructed surfaces are in the range of 0.53-0.95 J/m2.
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Hakimi, Mohammed Hail; Abdullah, Wan Hasiah; Makeen, Yousif M.; Saeed, Shadi A.; Al-Hakame, Hitham; Al-Moliki, Tareq; Al-Sharabi, Kholah Qaid; Hatem, Baleid Ali
2017-05-01
Calcareous shales and black limestones of the Jurassic Amran Group, located in the Sharab area (SW Yemen), were analysed based on organic and inorganic geochemical methods. The results of this study were used to reconstruct the paleoenvironmental and paleoclimatic conditions during Jurassic time and their relevance to organic matter enrichment during deposition of the Amran calcareous shale and black limestone deposits. The analysed Amran samples have present-day TOC and Stotal content values in the range of 0.25-0.91 wt % and 0.59-4.96 wt %, respectively. The relationship between Stotal and TOC contents indicates that the Jurassic Amran deposits were deposited in a marine environment as supported by biomarker environmental indicators. Biomarker distributions also reflect that the analysed Amran deposits received high contributions of marine organic matter (e.g., algal and microbial) with minor amount of land plant source inputs. Low oxygen (reducing) conditions during deposition of the Jurassic Amran deposits are indicated from low Pr/Ph values and relatively high elemental ratios of V/Ni and V/(V + Ni). Enrichment in the pyrite grains and very high DOPT and high Fe/Al ratios further suggest reducing bottom waters. This paleo-redox (i.e., reducing) conditions contributed to preservation of organic matter during deposition of the Jurassic Amran deposits. Semi-arid to warm climatic conditions are also evidenced during deposition of the Amran sediments and consequently increased biological productivity within the photic zone of the water column during deposition. Therefore, the increased bio-productivity in combination with good preservation of organic matter identified as the major mechanisms that gave rise to organic matter enrichment. This contradicts with the low organic matter content of the present-day TOC values of less than 1%. The biomarker maturity data indicate that the analysed Amran samples are of high thermal maturity; therefore, the low present-day TOC
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NEW FERMI-LAT EVENT RECONSTRUCTION REVEALS MORE HIGH-ENERGY GAMMA RAYS FROM GAMMA-RAY BURSTS
Energy Technology Data Exchange (ETDEWEB)
Atwood, W. B. [Santa Cruz Institute for Particle Physics, Department of Physics and Department of Astronomy and Astrophysics, University of California at Santa Cruz, Santa Cruz, CA 95064 (United States); Baldini, L. [Universita di Pisa and Istituto Nazionale di Fisica Nucleare, Sezione di Pisa, I-56127 Pisa (Italy); Bregeon, J.; Pesce-Rollins, M.; Sgro, C.; Tinivella, M. [Istituto Nazionale di Fisica Nucleare, Sezione di Pisa, I-56127 Pisa (Italy); Bruel, P. [Laboratoire Leprince-Ringuet, Ecole polytechnique, CNRS/IN2P3, Palaiseau (France); Chekhtman, A. [Center for Earth Observing and Space Research, College of Science, George Mason University, Fairfax, VA 22030 (United States); Cohen-Tanugi, J. [Laboratoire Univers et Particules de Montpellier, Universite Montpellier 2, CNRS/IN2P3, F-34095 Montpellier (France); Drlica-Wagner, A.; Omodei, N.; Rochester, L. S.; Usher, T. L. [W. W. Hansen Experimental Physics Laboratory, Kavli Institute for Particle Astrophysics and Cosmology, Department of Physics and SLAC National Accelerator Laboratory, Stanford University, Stanford, CA 94305 (United States); Granot, J. [Department of Natural Sciences, The Open University of Israel, 1 University Road, P.O. Box 808, Ra' anana 43537 (Israel); Longo, F. [Istituto Nazionale di Fisica Nucleare, Sezione di Trieste, I-34127 Trieste (Italy); Razzaque, S. [Department of Physics, University of Johannesburg, Auckland Park 2006 (South Africa); Zimmer, S., E-mail: melissa.pesce.rollins@pi.infn.it, E-mail: nicola.omodei@stanford.edu, E-mail: granot@openu.ac.il [Department of Physics, Stockholm University, AlbaNova, SE-106 91 Stockholm (Sweden)
2013-09-01
Based on the experience gained during the four and a half years of the mission, the Fermi-LAT Collaboration has undertaken a comprehensive revision of the event-level analysis going under the name of Pass 8. Although it is not yet finalized, we can test the improvements in the new event reconstruction with the special case of the prompt phase of bright gamma-ray bursts (GRBs), where the signal-to-noise ratio is large enough that loose selection cuts are sufficient to identify gamma rays associated with the source. Using the new event reconstruction, we have re-analyzed 10 GRBs previously detected by the Large Area Telescope (LAT) for which an X-ray/optical follow-up was possible and found four new gamma rays with energies greater than 10 GeV in addition to the seven previously known. Among these four is a 27.4 GeV gamma ray from GRB 080916C, which has a redshift of 4.35, thus making it the gamma ray with the highest intrinsic energy ({approx}147 GeV) detected from a GRB. We present here the salient aspects of the new event reconstruction and discuss the scientific implications of these new high-energy gamma rays, such as constraining extragalactic background light models, Lorentz invariance violation tests, the prompt emission mechanism, and the bulk Lorentz factor of the emitting region.
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Adnet, S.; Antoine, P.-O.; Hassan Baqri, S. R.; Crochet, J.-Y.; Marivaux, L.; Welcomme, J.-L.; Métais, G.
2007-04-01
New selachians (sharks and rays) have been collected from several late Eocene and early Oligocene marine localities in the Bugti Hills (Balochistan, Pakistan). Two new species of Requiem sharks (close to the Recent "Bull shark") are described : Carcharhinus balochensis and Carcharhinus perseus. The rest of the fauna is notable for the strong representation of Carcharhiniformes. These selachian faunas represent a unique tropical association for the Oligocene period and one of the first modern tropical selachian faunas, with modern taxa such as the two new species of "Bull sharks", Negaprion sp. and one of the first occurrences of Sphyrna sp. Moreover, these faunas permit paleoenvironmental interpretation of adjacent land masses. The relatively modern aspect of these faunas, compared with other contemporaneous and younger selachian associations from Atlantic and Mediterranean seas, suggests biogeographic isolation of selachian communities living in eastern and western parts of the Tethys before its final closure during the early-middle Miocene.
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Fast dictionary-based reconstruction for diffusion spectrum imaging.
Bilgic, Berkin; Chatnuntawech, Itthi; Setsompop, Kawin; Cauley, Stephen F; Yendiki, Anastasia; Wald, Lawrence L; Adalsteinsson, Elfar
2013-11-01
Diffusion spectrum imaging reveals detailed local diffusion properties at the expense of substantially long imaging times. It is possible to accelerate acquisition by undersampling in q-space, followed by image reconstruction that exploits prior knowledge on the diffusion probability density functions (pdfs). Previously proposed methods impose this prior in the form of sparsity under wavelet and total variation transforms, or under adaptive dictionaries that are trained on example datasets to maximize the sparsity of the representation. These compressed sensing (CS) methods require full-brain processing times on the order of hours using MATLAB running on a workstation. This work presents two dictionary-based reconstruction techniques that use analytical solutions, and are two orders of magnitude faster than the previously proposed dictionary-based CS approach. The first method generates a dictionary from the training data using principal component analysis (PCA), and performs the reconstruction in the PCA space. The second proposed method applies reconstruction using pseudoinverse with Tikhonov regularization with respect to a dictionary. This dictionary can either be obtained using the K-SVD algorithm, or it can simply be the training dataset of pdfs without any training. All of the proposed methods achieve reconstruction times on the order of seconds per imaging slice, and have reconstruction quality comparable to that of dictionary-based CS algorithm.
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Epitaxial graphene-encapsulated surface reconstruction of Ge(110)
Campbell, Gavin P.; Kiraly, Brian; Jacobberger, Robert M.; Mannix, Andrew J.; Arnold, Michael S.; Hersam, Mark C.; Guisinger, Nathan P.; Bedzyk, Michael J.
2018-04-01
Understanding and engineering the properties of crystalline surfaces has been critical in achieving functional electronics at the nanoscale. Employing scanning tunneling microscopy, surface x-ray diffraction, and high-resolution x-ray reflectivity experiments, we present a thorough study of epitaxial graphene (EG)/Ge(110) and report a Ge(110) "6 × 2" reconstruction stabilized by the presence of epitaxial graphene unseen in group-IV semiconductor surfaces. X-ray studies reveal that graphene resides atop the surface reconstruction with a 0.34 nm van der Waals (vdW) gap and provides protection from ambient degradation.
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A 31,000 year record of paleoenvironmental and lake-level change from Harding Lake, Alaska, USA
Finkenbinder, Matthew S.; Abbott, Mark B.; Edwards, Mary E.; Langdon, Catherine T.; Steinman, Byron A.; Finney, Bruce P.
2014-03-01
Physical and geochemical proxy analyses of sediment cores from Harding Lake in central Alaska are used to reconstruct paleoenvironmental change and millennial scale fluctuations in lake level for the last ˜31,000 years. We analyzed a composite 422 cm core from the lake depocenter (42.1 m water depth) and identified 4 distinct lithologic units based on variability in dry bulk density, organic matter, biogenic silica, carbon to nitrogen mass ratios (C/N), organic matter carbon isotopes (δ13C), pollen, and elemental abundances via scanning X-ray fluorescence, with age control provided by 16 Accelerator Mass Spectrometry radiocarbon dates and 210Pb dating. In addition, we analyzed a transect of cores from 7.1 m, 10.75 m, 15.91 m, and 38.05 m water depths to identify lake level fluctuations and to characterize sediment compositional changes as a function of water depth. Organic matter content and magnetic susceptibility values in surface sediments from all transect cores show a strong correlation with water depth. Interpretation of four lithologic units with well-dated contacts produced a record of water-depth variations that is consistent with independent climate records from eastern Beringia. Basal coarse-grained sediments (quartz pebble diamicton) were deposited prior to 30,700 calendar years before present (yr BP), possibly from fluvial reworking or deflation during a period of severe aridity. Unit 1 sediments were deposited between 30,700 and 15,700 yr BP and are characterized by a low organic matter content, a high magnetic susceptibility, and low biogenic silica concentrations resulting from very low lake levels, low terrestrial and in-lake productivity and a high flux of clastic sediment. An abrupt increase in organic matter and biogenic silica concentration marks the transition into Unit 2 sediments, which were deposited between 15,700 and 9,400 yr BP when lake levels were higher and variable (relative to Unit 1). The transition to full interglacial
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Wang, L.-C.; Behling, H.; Lee, T.-Q.; Li, H.-C.; Huh, C.-A.; Shiau, L.-J.; Chang, Y.-P.
2014-05-01
In this study, we reconstructed the paleoenvironmental changes from a sediment archive of the floodplain lake in Ilan Plain of NE Taiwan on multi-decadal resolution for the last ca. 1900 years. On the basis of pollen and diatom records, we evaluated the record of past vegetation, floods, typhoons and agriculture activities of this area, which is sensitive to the hydrological conditions of the West Pacific. High sedimentation rates with low microfossil preservations reflected multiple flood events and humid climatic conditions during 100-1400 AD. A shortly interrupted dry phase can be found during 940-1010 AD. The driest phase corresponds to the Little Ice Age phase 1 (LIA1, 1400-1620 AD) with less disturbance by flood events, which enhanced the occurrence of wetlands (Cyperaceae) and diatom depositions. Humid phases with frequent typhoons are inferred by high percentages of Lagerstroemia and high ratios of planktonic/benthic diatoms, respectively, during 500-700 AD and Little Ice Age phase 2 (LIA2, 1630-1850 AD). The occurrences of cultivated Poaceae (Oryza) during 1250-1300 AD and the last ~400 years, reflect agriculture activities, which seems to implicate strongly with the environmental stability. Finally, we found flood events which dominated during the El Niño-like stage, but dry events as well as frequent typhoon events happened during the La Niña-like stage. After comparing our results with the reconstructed proxy for tropical hydrological conditions, we suggested that the local hydrology in coastal East Asia were strongly affected by the typhoon-triggered heavy rainfalls which were influenced by the variation of global temperature, expansion of the Pacific warm pool and intensification of ENSO events.
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Anchukaitis, Kevin J.; Wilson, Rob; Briffa, Keith R.; Büntgen, Ulf; Cook, Edward R.; D'Arrigo, Rosanne; Davi, Nicole; Esper, Jan; Frank, David; Gunnarson, Björn E.; Hegerl, Gabi; Helama, Samuli; Klesse, Stefan; Krusic, Paul J.; Linderholm, Hans W.; Myglan, Vladimir; Osborn, Timothy J.; Zhang, Peng; Rydval, Milos; Schneider, Lea; Schurer, Andrew; Wiles, Greg; Zorita, Eduardo
2017-05-01
Climate field reconstructions from networks of tree-ring proxy data can be used to characterize regional-scale climate changes, reveal spatial anomaly patterns associated with atmospheric circulation changes, radiative forcing, and large-scale modes of ocean-atmosphere variability, and provide spatiotemporal targets for climate model comparison and evaluation. Here we use a multiproxy network of tree-ring chronologies to reconstruct spatially resolved warm season (May-August) mean temperatures across the extratropical Northern Hemisphere (40-90°N) using Point-by-Point Regression (PPR). The resulting annual maps of temperature anomalies (750-1988 CE) reveal a consistent imprint of volcanism, with 96% of reconstructed grid points experiencing colder conditions following eruptions. Solar influences are detected at the bicentennial (de Vries) frequency, although at other time scales the influence of insolation variability is weak. Approximately 90% of reconstructed grid points show warmer temperatures during the Medieval Climate Anomaly when compared to the Little Ice Age, although the magnitude varies spatially across the hemisphere. Estimates of field reconstruction skill through time and over space can guide future temporal extension and spatial expansion of the proxy network.
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Florenzano, Assunta; Mercuri, Anna Maria; Rinaldi, Rossella; Rattighieri, Eleonora; Fornaciari, Rita; Messora, Rita; Arru, Laura
2017-10-01
Modern pollen spectra are an invaluable reference tool for paleoenvironmental and cultural landscape reconstructions, but the importance of knowing the pollen rain released from orchards remains underexplored. In particular, the role of cultivated trees is in past and current agrarian landscapes has not been fully investigated. Here, we present a pollen analysis of 70 surface soil samples taken from 12 olive groves in Basilicata and Tuscany, two regions of Italy that exemplify this cultivation in the Mediterranean basin. This study was carried out to assess the representativeness of Olea pollen in modern cultivations. Although many variables can influence the amount of pollen observed in soils, it was clear that most of the pollen was deposited below the trees in the olive groves. A rapid decline in the olive pollen percentages (c. 85% on average) was found when comparing samples taken from IN vs. OUT of each grove. The mean percentages of Olea pollen obtained from the archaeological sites close to the studied orchards suggest that olive groves were established far from the Roman farmhouses of Tuscany. Further south, in the core of the Mediterranean basin, the cultivation of Olea trees was likely situated approximately 500–1000 m from the rural sites in Basilicata, and dated from the Hellenistic to the Medieval period.
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Huang, Y.; Longo, W. M.; Zheng, Y.; Richter, N.; Dillon, J. T.; Theroux, S.; D'Andrea, W. J.; Toney, J. L.; Wang, L.; Amaral-Zettler, L. A.
2017-12-01
Alkenones are mature, well-established paleo-sea surface temperature proxies that have been widely applied for more than three decades. However, recent advances across a broad range of alkenone-related topics at Brown University are inviting new paleoclimate and paleo-environmental applications for these classic biomarkers. In this presentation, I will summarize our progress in the following areas: (1) Discovery of a freshwater alkenone-producing haptophyte species and structural elucidation of novel alkenone structures unique to the species, performing in-situ temperature calibrations, and classifying alkenone-producing haptophytes into three groups based on molecular ecological approaches (with the new species belonging to Group I Isochrysidales); (2) A global survey of Group I haptophyte distributions and environmental conditions favoring the presence of this alga, as well as examples of using Group I alkenones for paleotemperature reconstructions; (3) New gas chromatographic columns that allow unprecedented resolution of alkenones and alkenoates and associated structural isomers, and development of a new suite of paleotemperature and paleoenvironmental proxies; (4) A new liquid chromatographic separation technique that allows efficient cleanup of alkenones and alkenoates (without the need for saponification) for subsequent coelution-free gas chromatographic analysis; (5) Novel structural features revealed by new analytical methods that now allow a comprehensive re-assessment of taxonomic features of various haptophyte species, with principal component analysis capable of fully resolving species biomarker distributions; (6) Development of UK37 double prime (UK37'') for Group II haptophytes (e.g., those occurring in saline lakes and estuaries), that differs from the traditional unsaturation indices used for SST reconstructions; (7) New assessment of how mixed inputs from different alkenone groups may affect SST reconstructions in marginal ocean environments and
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Sue, Gloria R; Lee, Gordon K
2018-05-01
Mastectomy skin necrosis is a significant problem after breast reconstruction. We sought to perform a comparative analysis on this complication between patients undergoing autologous breast reconstruction and patients undergoing 2-stage expander implant breast reconstruction. A retrospective review was performed on consecutive patients undergoing autologous breast reconstruction or 2-stage expander implant breast reconstruction by the senior author from 2006 through 2015. Patient demographic factors including age, body mass index, history of diabetes, history of smoking, and history of radiation to the breast were collected. Our primary outcome measure was mastectomy skin necrosis. Fisher exact test was used for statistical analysis between the 2 patient cohorts. The treatment patterns of mastectomy skin necrosis were then analyzed. We identified 204 patients who underwent autologous breast reconstruction and 293 patients who underwent 2-stage expander implant breast reconstruction. Patients undergoing autologous breast reconstruction were older, heavier, more likely to have diabetes, and more likely to have had prior radiation to the breast compared with patients undergoing implant-based reconstruction. The incidence of mastectomy skin necrosis was 30.4% of patients in the autologous group compared with only 10.6% of patients in the tissue expander group (P care in the autologous group, only 3.2% were treated with local wound care in the tissue expander group (P skin necrosis is significantly more likely to occur after autologous breast reconstruction compared with 2-stage expander implant-based breast reconstruction. Patients with autologous reconstructions are more readily treated with local wound care compared with patients with tissue expanders, who tended to require operative treatment of this complication. Patients considering breast reconstruction should be counseled appropriately regarding the differences in incidence and management of mastectomy skin
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Beverly, Emily J.; Peppe, Daniel J.; Driese, Steven G.; Blegen, Nick; Faith, J. Tyler; Tryon, Christian A.; Stinchcomb, Gary E.
2017-11-01
The impact of changing environments on the evolution and dispersal of Homo sapiens is highly debated, but few data are available from equatorial Africa. Lake Victoria is the largest freshwater lake in the tropics and is currently a biogeographic barrier between the eastern and western branches of the East African Rift. The lake has previously desiccated at 17 ka and again at 15 ka, but little is known from this region prior to the Last Glacial Maximum. The Pleistocene terrestrial deposits on the northeast coast of Lake Victoria (94 to 36 ka) are ideal for paleoenvironmental reconstructions where volcaniclastic deposits (tuffs), fluvial deposits, tufa, and paleosols are exposed, which can be used to reconstruct Critical Zones (CZ) of the past (paleo-CZs). The paleo-CZ is a holistic concept that reconstructs the entire landscape using geologic records of the atmosphere, hydrosphere, lithosphere, biosphere, and pedosphere (the focus of this study). New paleosol-based mean annual precipitation (MAP) proxies from Karungu, Rusinga Island, and Mfangano Island indicate an average MAP of 750108 mm yr-1 (CALMAG), 800182 mm yr-1 (CIA-K), and 1010228 mm yr-1 (PPM1.0) with no statistical difference throughout the 11 m thick sequence. This corresponds to between 54 and 72% of modern precipitation. Tephras bracketing these paleosols have been correlated across seven sites, and sample a regional paleo-CZ across a 55 km transect along the eastern shoreline of the modern lake. Given the sensitivity of Lake Victoria to precipitation, it is likely that the lake was significantly smaller than modern between 94 ka and 36 ka. This would have removed a major barrier for the movement of fauna (including early modern humans) and provided a dispersal corridor across the equator and between the rifts. It is also consistent with the associated fossil faunal assemblage indicative of semi-arid grasslands. During the Late Pleistocene, the combined geologic and paleontological evidence suggests a
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Directory of Open Access Journals (Sweden)
Emily J. Beverly
2017-11-01
Full Text Available The impact of changing environments on the evolution and dispersal of Homo sapiens is highly debated, but few data are available from equatorial Africa. Lake Victoria is the largest freshwater lake in the tropics and is currently a biogeographic barrier between the eastern and western branches of the East African Rift. The lake has previously desiccated at ~17 ka and again at ~15 ka, but little is known from this region prior to the Last Glacial Maximum. The Pleistocene terrestrial deposits on the northeast coast of Lake Victoria (94–36 ka are ideal for paleoenvironmental reconstructions where volcaniclastic deposits (tuffs, fluvial deposits, tufa, and paleosols are exposed, which can be used to reconstruct Critical Zones (CZ of the past (paleo-CZs. The paleo-CZ is a holistic concept that reconstructs the entire landscape using geologic records of the atmosphere, hydrosphere, lithosphere, biosphere, and pedosphere (the focus of this study. New paleosol-based mean annual precipitation (MAP proxies from Karungu, Rusinga Island, and Mfangano Island indicate an average MAP of 750 ± 108 mm year−1 (CALMAG, 800 ± 182 mm year−1 (CIA-K, and 1,010 ± 228 mm year−1 (PPM1.0 with no statistical difference throughout the 11 m thick sequence. This corresponds to between 54 and 72% of modern precipitation. Tephras bracketing these paleosols have been correlated across seven sites, and sample a regional paleo-CZ across a ~55 km transect along the eastern shoreline of the modern lake. Given the sensitivity of Lake Victoria to precipitation, it is likely that the lake was significantly smaller than modern between 94 and 36 ka. This would have removed a major barrier for the movement of fauna (including early modern humans and provided a dispersal corridor across the equator and between the rifts. It is also consistent with the associated fossil faunal assemblage indicative of semi-arid grasslands. During the Late Pleistocene, the combined geologic and
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Qiang, Xiaoke; Xu, Xinwen; Zhao, Hui; Fu, Chaofeng
2018-05-01
The ferrimagnetic iron sulfide greigite (Fe3S4) occurs widely in sulfidic lacustrine and marine sedimentary environments. Knowledge of its formation and persistence is important for both magnetostratigraphic and paleoenvironmental studies. Although the formation mechanism of greigite has been widely demonstrated, the sedimentary environments associated with greigite formation in lakes, especially on relatively long timescales, are poorly understood. A long and continuous sequence of Pleistocene lacustrine sediments was recovered in the Heqing drill core from southwestern China, which provides an outstanding record of continental climate and environment. Integrated magnetic, geochemical, and paleoclimatic analysis of the lacustrine sequence provides an opportunity to improve our understanding of the environmental controls on greigite formation. Rock magnetic and scanning electron microscope analyses of selected samples from the core reveal that greigite is present in the lower part of the core (part 1, 665.8-372.5 m). Greigite occurs throughout this interval and is the dominant magnetic mineral, irrespective of the climatic state. The magnetic susceptibility (χ) record, which is mainly controlled by the concentration of greigite, matches well with variations in the Indian Summer Monsoon (ISM) index and total organic carbon (TOC) content, with no significant time lag. This indicates that the greigite formed during early diagenesis. In greigite-bearing intervals, with the χ increase, Bc value increase and tends to be stable at about 50 mT. Therefore, we suggest that χ values could estimate the variation of greigite concentration approximately in the Heqing core. Greigite favored more abundant in terrigenous-rich and organic-poor layers associated with weak summer monsoon which are characterized by high χ values, high Fe content, high Rb/Sr ratio and low TOC content. Greigite enhancement can be explained by variations in terrigenous inputs. Our studies demonstrate
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Tumescent mastectomy technique in autologous breast reconstruction.
Vargas, Christina R; Koolen, Pieter G L; Ho, Olivia A; Ricci, Joseph A; Tobias, Adam M; Lin, Samuel J; Lee, Bernard T
2015-10-01
Use of the tumescent mastectomy technique has been reported to facilitate development of a hydrodissection plane, reduce blood loss, and provide adjunct analgesia. Previous studies suggest that tumescent dissection may contribute to adverse outcomes after immediate implant reconstruction; however, its effect on autologous microsurgical reconstruction has not been established. A retrospective review was conducted of all immediate microsurgical breast reconstruction procedures at a single academic center between January 2004 and December 2013. Records were queried for age, body mass index, mastectomy weight, diabetes, hypertension, smoking, preoperative radiation, reconstruction flap type, and autologous flap weight. Outcomes of interest were mastectomy skin necrosis, complete and partial flap loss, return to the operating room, breast hematoma, seroma, and infection. There were 730 immediate autologous breast reconstructions performed during the study period; 46% with the tumescent dissection technique. Groups were similar with respect to baseline patient and procedural characteristics. Univariate analysis revealed no significant difference in the incidence of mastectomy skin necrosis, complete or partial flap loss, return to the operating room, operative time, estimated blood loss, recurrence, breast hematoma, seroma, or infection in patients undergoing tumescent mastectomy. Multivariate analysis also demonstrated no significant association between the use of tumescent technique and postoperative breast mastectomy skin necrosis (P = 0.980), hematoma (P = 0.759), or seroma (P = 0.340). Use of the tumescent dissection technique during mastectomy is not significantly associated with adverse outcomes after microsurgical breast reconstruction. Despite concern for its impact on implant reconstruction, our findings suggest that this method can be used safely preceding autologous procedures. Copyright © 2015 Elsevier Inc. All rights reserved.
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Sasaki, Hana; Onishi, Yuri; Ishihara, Yoshiro; Yoshimura, Kazuhisa
2017-04-01
Stalagmites can provide various types of paleoenvironmental information such as information on vegetation and climate changes. Fluorescent annual layers formed by humic substances (mainly fulvic acids: FA) in these stalagmites can also provide a time proxy, and a time series on precipitation. Fluorescence intensity patterns in these annual layers can be classified into symmetric, gradually increasing and gradually decreasing types. Onishi et al. (EGU2016) demonstrated the existence of these fluorescence intensity patterns in the annual layers, and their stratigraphic changes, by numerical simulations, and suggested that the patterns could provide paleoenvironmental information at a sub-annual resolution. In this study, we carried out an analysis of fluorescence intensity patterns in the annual layers of a stalagmite from Ryuo-do Cave, Nagasaki Prefecture, western Japan, and also simulated the patterns in the stalagmite, to obtain paleoenvironmental information. Fluorescence intensity patterns in the annual layers are strongly affected by annual variations in FA concentration and precipitation rates of calcite. As the result of simulations of fluorescence intensity patterns, cumulative variations and various types of pattern are reproduced. These differences are depending on time lags between the variation of the FA concentration in the drip waters, and that of the growth rate of the stalagmite. Co-precipitation models of FA are divided into the "Hiatus model" in which FA are preferentially preserved in the stalagmite when its growth rate is relatively low, and the "Partition coefficient (PC) model" in which FA concentrations in the stalagmite increase when the calcite precipitation rate is relatively high. However, various fluorescence intensity patterns in the annual layers could be formed under a combination or either of both of the models. Fluorescence intensity patterns in an annual layer in the stalagmite from Ryuo-do Cave, Nagasaki Prefecture, western Japan
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Fast Dictionary-Based Reconstruction for Diffusion Spectrum Imaging
Bilgic, Berkin; Chatnuntawech, Itthi; Setsompop, Kawin; Cauley, Stephen F.; Yendiki, Anastasia; Wald, Lawrence L.; Adalsteinsson, Elfar
2015-01-01
Diffusion Spectrum Imaging (DSI) reveals detailed local diffusion properties at the expense of substantially long imaging times. It is possible to accelerate acquisition by undersampling in q-space, followed by image reconstruction that exploits prior knowledge on the diffusion probability density functions (pdfs). Previously proposed methods impose this prior in the form of sparsity under wavelet and total variation (TV) transforms, or under adaptive dictionaries that are trained on example datasets to maximize the sparsity of the representation. These compressed sensing (CS) methods require full-brain processing times on the order of hours using Matlab running on a workstation. This work presents two dictionary-based reconstruction techniques that use analytical solutions, and are two orders of magnitude faster than the previously proposed dictionary-based CS approach. The first method generates a dictionary from the training data using Principal Component Analysis (PCA), and performs the reconstruction in the PCA space. The second proposed method applies reconstruction using pseudoinverse with Tikhonov regularization with respect to a dictionary. This dictionary can either be obtained using the K-SVD algorithm, or it can simply be the training dataset of pdfs without any training. All of the proposed methods achieve reconstruction times on the order of seconds per imaging slice, and have reconstruction quality comparable to that of dictionary-based CS algorithm. PMID:23846466
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Higher order total variation regularization for EIT reconstruction.
Gong, Bo; Schullcke, Benjamin; Krueger-Ziolek, Sabine; Zhang, Fan; Mueller-Lisse, Ullrich; Moeller, Knut
2018-01-08
Electrical impedance tomography (EIT) attempts to reveal the conductivity distribution of a domain based on the electrical boundary condition. This is an ill-posed inverse problem; its solution is very unstable. Total variation (TV) regularization is one of the techniques commonly employed to stabilize reconstructions. However, it is well known that TV regularization induces staircase effects, which are not realistic in clinical applications. To reduce such artifacts, modified TV regularization terms considering a higher order differential operator were developed in several previous studies. One of them is called total generalized variation (TGV) regularization. TGV regularization has been successively applied in image processing in a regular grid context. In this study, we adapted TGV regularization to the finite element model (FEM) framework for EIT reconstruction. Reconstructions using simulation and clinical data were performed. First results indicate that, in comparison to TV regularization, TGV regularization promotes more realistic images. Graphical abstract Reconstructed conductivity changes located on selected vertical lines. For each of the reconstructed images as well as the ground truth image, conductivity changes located along the selected left and right vertical lines are plotted. In these plots, the notation GT in the legend stands for ground truth, TV stands for total variation method, and TGV stands for total generalized variation method. Reconstructed conductivity distributions from the GREIT algorithm are also demonstrated.
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Reconstructions of the sulfur-passivated InSb (100) surface
Energy Technology Data Exchange (ETDEWEB)
Ciochoń, Piotr, E-mail: piotr.ciochon@doctoral.uj.edu.pl; Olszowska, Natalia; Wróbel, Sonia; Kołodziej, Jacek
2017-04-01
Highlights: • Two new surface reconstructions of a S-passivated InSb (001) surface are reported. • The reconstructions are obtained through partial loss of surface sulfur. • They are characterized by the thickness of ∼4 Å and good crystallographic ordering. • The reconstructions provide adequate electronic passivation of the surface. - Abstract: We have studied the properties of the InSb (100) surface passivated with sulfur dimers emitted by the solid-state electrochemical cell in ultra-high vacuum. Annealing the passivated surface in the temperature equal to T = 326 °C led to the formation of the c(4 × 8) surface reconstruction, while increasing the temperature to T = 348 °C resulted in the transition to c(4 × 12) reconstruction. To the best of our knowledge these reconstructions have not been reported to date and are characterized by the exceptionally good crystallographic order. XPS studies revealed that there are at least 4 different chemical species of sulfur present on the surface and the estimated thickness of the sulfur layers is equal to around 4 Å. The surface reconstructions are characterized by the lowered intensity of the surface electronic states and resonances near the Fermi level, compared to the clean InSb surface, making them potentially very useful for the fabrication of InSb-based electronic and optoelectronic devices.
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[Pedicled versus free TRAM flap for breast reconstruction].
Galla, T J; Lukas, B; Feller, A M
1999-03-01
In breast reconstruction, the free TRAM-flap offers many advantages over the pedicled TRAM-flap. Due to its superior perfusion, the free flap rarely develops necrosis. Shaping of the flap is easier due to the lack of the thick muscle pedicle. Because the rectus muscle is spared, there is minimal donor site morbidity. However, the necessary microvascular anastomoses reduced the acceptance of the free TRAM-flap. During a 13-months period, 51 breast reconstructions were performed in 41 patients, 31 unilateral and ten bilateral. 45 flaps served for delayed reconstruction and six flaps for immediate reconstruction. The operations were performed by two teams working simultaneously. The average operating time was 3.9 hours for unilateral and 6.9 hours for bilateral delayed reconstruction. For immediate reconstruction, 6.2 and 6.3 hours were required for uni- and bilateral procedures, respectively. In 38 flaps, the thoracodorsal vessels served as recipient vessels; 13 flaps were anastomosed to the internal mammary artery and vein. Postoperative complications were observed in 13 patients. Three vessel anastomoses had to be revised. In one flap, a partial necrosis occurred; in two flaps hematoma evacuation was necessary. Two patients suffered from fat necroses at the abdomen and one umbilicus was lost. Skin irritations and seromas at the abdomen occurred in five patients. Pulmonary embolism was diagnosed in one patient three weeks postoperatively. Abdominal hernias or bulging in the epigastric area were not observed up to 15 months after reconstruction. These results reveal a low complication rate for breast reconstruction with the free TRAM-flap. The advantages of this technique as compared to the pedicled technique are discussed.
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Evaluation of long-term geological and climatic changes in the Spanish programme
International Nuclear Information System (INIS)
Torres, T.; Ortiz, J.E.; Cortes, A.; Delgado, A.
2004-01-01
The Bio-molecular Stratigraphy Laboratory of the Madrid School of Mines has been largely involved in the analysis of long-term paleo-environmental changes in the Iberian Peninsula during the Quaternary. Some of the research projects were UE funded: Paleo-climatological Revision of Climate Evolution in Western Mediterranean Region. Evaluation of Altered Scenarios, Evidence from Quaternary Infill Paleo-hydrogeology, Sequential Biosphere modelling function of Climate evolution models; Paleo-hydrogeological Data Analysis and Model Testing. Other projects were funded by the National Company for Radioactive Waste Management (ENRESA) and the Spanish Nuclear Safety Council (CSN): 'Paleo-climate reconstruction from Middle Pleistocene times through dating and isotopic analysis of tufa deposits'; 'Paleo-environmental evolution of the southern part of the Iberian Peninsula'; 'Paleo-climate'. On a minor scale the laboratory was also involved in the study of some argillaceous media: 'Organic Geochemistry of some deep Spanish argillaceous formations' and 'Effects of climatic change on the argillaceous series of the Duero and Ebro basins'. Here we will present some of the results obtained from tufa deposits analysis and paleo-environmental information from the Guadix-Baza Basin composite-stratigraphical-type-section study. (authors)
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ROPES reveals past land cover and pollen productivity estimates from single pollen records
Theuerkauf, Martin; Couwenberg, John
2018-04-01
Quantitative reconstructions of past vegetation cover commonly require pollen productivity estimates (PPEs). PPEs are calibrated in extensive and rather cumbersome surface-sample studies, and are so far only available for selected regions. Moreover, it may be questioned whether present-day pollen-landcover relationships are valid for palaeo-situations. We here introduce the ROPES approach that simultaneously derives PPEs and mean plant abundances from single pollen records. ROPES requires pollen counts and pollen accumulation rates (PARs, grains cm-2 year-1). Pollen counts are used to reconstruct plant abundances following the REVEALS approach. The principle of ROPES is that changes in plant abundance are linearly represented in observed PAR values. For example, if the PAR of pine doubles, so should the REVEALS reconstructed abundance of pine. Consequently, if a REVEALS reconstruction is ‘correct’ (i.e. ‘correct’ PPEs are used) the ratio ‘PAR over REVEALS’ is constant for each taxon along all samples of a record. With incorrect PPEs, the ratio will instead vary. ROPES starts from random (likely incorrect) PPEs, but then adjusts them using an optimization algorithm with the aim to minimize variation in the ‘PAR over REVEALS’ ratio across the record. ROPES thus simultaneously calculates mean plant abundances and PPEs. We illustrate the approach with test applications on nine synthetic pollen records. The results show that good performance of ROPES requires data sets with high underlying variation, many samples and low noise in the PAR data. ROPES can deliver first landcover reconstructions in regions for which PPEs are not yet available. The PPEs provided by ROPES may then allow for further REVEALS-based reconstructions. Similarly, ROPES can provide insight in pollen productivity during distinct periods of the past such as the Lateglacial. We see a potential to study spatial and temporal variation in pollen productivity for example in relation to site
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... Rupture of the knee’s ACL is a common sports-related injury. It is associated with other knee problems, such as meniscal tears and knee instability. ... after anterior cruciate ligament reconstruction. Am J of Sports Med. 2013; ... treatment and prevention of arthritis and musculoskeletal and skin diseases; the ...
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Ranking of tree-ring based temperature reconstructions of the past millennium
Esper, Jan; Krusic, Paul J.; Ljungqvist, Fredrik C.; Luterbacher, Jürg; Carrer, Marco; Cook, Ed; Davi, Nicole K.; Hartl-Meier, Claudia; Kirdyanov, Alexander; Konter, Oliver; Myglan, Vladimir; Timonen, Mauri; Treydte, Kerstin; Trouet, Valerie; Villalba, Ricardo; Yang, Bao; Büntgen, Ulf
2016-08-01
Tree-ring chronologies are widely used to reconstruct high-to low-frequency variations in growing season temperatures over centuries to millennia. The relevance of these timeseries in large-scale climate reconstructions is often determined by the strength of their correlation against instrumental temperature data. However, this single criterion ignores several important quantitative and qualitative characteristics of tree-ring chronologies. Those characteristics are (i) data homogeneity, (ii) sample replication, (iii) growth coherence, (iv) chronology development, and (v) climate signal including the correlation with instrumental data. Based on these 5 characteristics, a reconstruction-scoring scheme is proposed and applied to 39 published, millennial-length temperature reconstructions from Asia, Europe, North America, and the Southern Hemisphere. Results reveal no reconstruction scores highest in every category and each has their own strengths and weaknesses. Reconstructions that perform better overall include N-Scan and Finland from Europe, E-Canada from North America, Yamal and Dzhelo from Asia. Reconstructions performing less well include W-Himalaya and Karakorum from Asia, Tatra and S-Finland from Europe, and Great Basin from North America. By providing a comprehensive set of criteria to evaluate tree-ring chronologies we hope to improve the development of large-scale temperature reconstructions spanning the past millennium. All reconstructions and their corresponding scores are provided at http://www.blogs.uni-mainz.de/fb09climatology.
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Reconstructed storm tracks reveal three centuries of changing moisture delivery to North America.
Wise, Erika K; Dannenberg, Matthew P
2017-06-01
Moisture delivery to western North America is closely linked to variability in the westerly storm tracks of midlatitude cyclones, which are, in turn, modified by larger-scale features such as the El Niño-Southern Oscillation system. Instrumental and modeling data suggest that extratropical storm tracks may be intensifying and shifting poleward due to anthropogenic climate change, but it is difficult to separate recent trends from natural variability because of the large amount of decadal and longer variation in storm tracks and their limited instrumental record. We reconstruct cool-season, midlatitude Pacific storm-track position and intensity from 1693 to 1995 CE using existing tree-ring chronologies along with a network of newly developed chronologies from the U.S. Pacific Northwest, where small variations in storm-track position can have a major influence on hydroclimate patterns. Our results show high interannual-to-multidecadal variability in storm-track position and intensity over the past 303 years, with spectral signatures characteristic of tropical and northern Pacific influences. Comparison with reconstructions of precipitation and tropical sea surface temperature confirms the relationship between shifting drought patterns in the Pacific Northwest and storm-track variability through time and demonstrates the long-term influence of El Niño. These results allow us to place recent storm-track changes in the context of decadal and multidecadal fluctuations across the long-term record, showing that recent changes in storm-track intensity likely represent a warming-related increase amplified by natural decadal variability.
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Free flap reconstruction for diabetic foot limb salvage.
Sato, Tomoya; Yana, Yuichiro; Ichioka, Shigeru
2017-12-01
Although free flap is gaining popularity for the reconstruction of diabetic foot ulcers, it is unclear whether free flap reconstruction increases the chances of postoperative independent ambulation. The aim of this study is to evaluate the relationship between free flap success and postoperative ambulation. This study reviewed 23 cases of free flap reconstruction for diabetic foot ulcers between January 2007 and March 2014. Free rectus abdominis, latissimus dorsi, and anterolateral thigh flaps were used in ten, eight, and five patients, respectively. A comparison was made between free flap success and postoperative independent ambulation using Fisher's exact test. Two patients developed congestive heart failure with fatal consequences within 14 days postoperatively, resulting in an in-hospital mortality rate of 8.7%. Five patients lost their flaps (21.7%). Of the 16 patients who had flap success, 12 achieved independent ambulation. Five patients with flap loss did not achieve independent ambulation, except one patient who underwent secondary flap reconstruction using a distally based sural flap. Fisher's exact test revealed that independent ambulation was associated with free flap success (p = 0.047). The present study indicates that free flap reconstruction may increase the possibility of independent ambulation for patients with extensive tissue defects due to diabetic ulcers. Intermediate limb salvage rates and independent ambulation rates were favourable in patients with successful reconstruction. The use of foot orthoses and a team approach with pedorthists were effective to prevent recurrence.
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Azuara , J; Combourieu-Nebout , N; Lebreton , V; Mazier , F; Müller , S D; Dezileau , L ,
2015-01-01
International audience; Holocene climate fluctuations and human activity since the Neolithic have shaped present-day Mediter-ranean environments. Separating anthropogenic effects from climatic impacts to better understand Mediterranean pale-oenvironmental changes over the last millennia remains a challenging issue. High-resolution pollen analyses were un-dertaken on two cores from the Palavasian lagoon system (Hérault, southern France). These records allow reconstruction of vegetation dynamic...
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Albian Phyto geography and environment in Santa Lucia basin, Uruguay: a study based on palynomorphs
International Nuclear Information System (INIS)
Campos, C.; Veroslavsky, G.
1999-01-01
This paper presents bioestratigraphic results on the Castellanos and Migues formations, Upper Cretaceous of the Santa Lucia basin, Uruguay. The samples are from six exploratory wells drilled by Ancap and YPF, in 50 th and 70 th decades. The palynological data have been used to determine the paleoenvironmental evolution, the paleoclimate as well as the paleogeografic reconstruction for this area, in the Albian time. (author).
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On the paleoenvironmental potential of 253 newly discovered pine stumps from Zurich, Switzerland
Reinig, Frederick; Nievergelt, Daniel; Esper, Jan; Friedrich, Michael; Helle, Gerhard; Hellmann, Lena; Kromer, Bernd; Morganti, Sandro; Pauly, Maren; Sookdeo, Adam; Tegel, Willy; Treydte, Kerstin; Wacker, Lukas; Büntgen, Ulf
2017-04-01
The transition from the last Ice Age to the early Holocene 15'000-10'000 BP represents a close natural analog to the ongoing and predicted rates of anthropogenic climate change. A reduced quality and quantity of high-resolution proxy archives during this period, however, limits our understanding of the magnitude and pace of Late Glacial (LG) environmental variability. Here, we present the world's best preserved, most replicated and oldest forest remains: A total of 253 subfossil pine stumps were recently discovered in Zurich. The combined approach of tree-ring and radiocarbon (14C) measurements results in an absolutely dated Preboreal Swiss tree-ring width chronology and eight floating chronologies. With tree ages ranging between 41 and 506 years, often including pith and bark, and a mean segment length of 163 years, this exceptional find is distributed over nearly 2'000 years between the Allerød and the Preboreal. Together with 200 previously collected LG pines from the greater Zurich region, this study sets a benchmark in terms of sample replication and dating precision for stable more dynamic climatic periods such as the Laacher See eruption, the Older and Younger Dryas. The paleoenvironmental significance would even increase when annually resolved 14C-measurements help fixing a major, Northern Hemispheric gap in the absolutely dated dendro time series during the Younger Dryas. While overcoming this interlude, our results further emphasize the importance of interdisciplinary research on these striking LG climatic shifts to better understand and assess their ecological and environmental impact.
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Reconstruction of March-June precipitation from tree rings in central Liaoning, China
Wang, Yanchao; Liu, Yu
2017-11-01
A dendrochronological profile was generated from Chinese pines ( Pinus tabulaeformis Carr.) in the Qianshan Mountains in northeastern China. Based on correlation analyses, the pattern of precipitation from March to June ( P 36 ) was reconstructed using a simple linear model, which explained 42.7% of the total variance in observed precipitation from 1951 to 2012. The reconstructed P 36 series revealed a consistently increasing trend in precipitation during the twentieth century in the Qianshan Mountains. The reconstructed data showed trends that were similar to those in the variation in trends for March-June precipitation observed at the Shenyang station, the reconstructed January-May precipitation trends in Shenyang City, and the reconstructed average June-September relative humidity for Yiwulü Mountain. The reconstructed data also showed good agreement with the droughts reported in historical documents and recorded by meteorological stations in Liaoning. Spatial correlation analyses show that the reconstructed data reflect the variability in precipitation that occurs over much of northeastern China. In addition, our reconstruction showed a significant periodicity. The significant correlations between the reconstructed P 36 and the El Niño-Southern Oscillation (ENSO), Pacific Decadal Oscillation (PDO) and sunspot numbers indicate that precipitation variability in the Qianshan Mountain region is probably driven by extensive atmosphere-sea interactions and solar activities.
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Signal process and profile reconstruction of stress corrosion crack by eddy current test
International Nuclear Information System (INIS)
Zhang Siquan; Chen Tiequn; Liu Guixiong
2008-01-01
The reconstruction of crack profiles is very important in the NDE (nondestructive evaluation) of critical structures, such as pressure vessel and tubes in heat exchangers. First a wavelet transform signal processing technique is used to reduce noise and other non-defect signals from the signals of crack, and then based on an artificial neural network method, the crack profiles are reconstructed. Although the results reveal that this method is with many advantages such as a short CPU time and precision for reconstruction,it does have some drawbacks, for example, the database generation and network training is a much time consuming work. Moreover, this approach does not expressly reconstruct the distribution of conductivity inside a crack, so the reliability of a reconstructed crack shape is unknown. But in practical application, if we do not consider the multiple cracks, this method can be used to reconstruct the natural crack. (authors)
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Mastectomy skin necrosis after microsurgical breast reconstruction.
Vargas, Christina R; Koolen, Pieter G; Anderson, Katarina E; Paul, Marek A; Tobias, Adam M; Lin, Samuel J; Lee, Bernard T
2015-10-01
Mastectomy skin necrosis represents a significant clinical morbidity after immediate breast reconstruction. In addition to aesthetic deformity, necrosis of the native mastectomy skin may require debridement, additional reconstruction, or prolonged wound care and potentially delay oncologic treatment. This study aims to evaluate patient and procedural characteristics to identify predictors of mastectomy skin necrosis after microsurgical breast reconstruction. A retrospective review was performed of all immediate microsurgical breast reconstructions performed at a single academic center. Patient records were queried for age, diabetes, active smoking, previous breast surgery, preoperative radiation, preoperative chemotherapy, body mass index, mastectomy type, mastectomy weight, flap type, autologous flap type, and postoperative mastectomy skin flap necrosis. There were 746 immediate autologous microsurgical flaps performed by three plastic surgeons at our institution during the study period. The incidence of mastectomy skin flap necrosis was 13.4%. Univariate analysis revealed a significantly higher incidence of mastectomy skin necrosis in patients with higher mastectomy weight (P mastectomy type. Multivariate analysis demonstrated statistically significant associations between mastectomy skin necrosis and both increasing mastectomy weight (odds ratio 1.348 per quartile increase, P = 0.009) and diabetes (odds ratio 2.356, P = 0.011). Increasing mastectomy weight and coexisting diabetes are significantly associated with postoperative mastectomy skin necrosis after microsurgical reconstruction. These characteristics should be considered during patient counseling, procedure selection, operative planning, and intraoperative tissue viability assessment. Copyright © 2015 Elsevier Inc. All rights reserved.
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van der Bilt, Willem G. M.; D'Andrea, William J.; Bakke, Jostein; Balascio, Nicholas L.; Werner, Johannes P.; Gjerde, Marthe; Bradley, Raymond S.
2018-03-01
Situated at the crossroads of major oceanic and atmospheric circulation patterns, the Arctic is a key component of Earth's climate system. Compounded by sea-ice feedbacks, even modest shifts in the region's heat budget drive large climate responses. This is highlighted by the observed amplified response of the Arctic to global warming. Assessing the imprint and signature of underlying forcing mechanisms require paleoclimate records, allowing us to expand our knowledge beyond the short instrumental period and contextualize ongoing warming. However, such datasets are scarce and sparse in the Arctic, limiting our ability to address these issues. Here, we present two quantitative Holocene-length paleotemperature records from the High Arctic Svalbard archipelago, situated in the climatically sensitive Arctic North Atlantic. Temperature estimates are based on U37K unsaturation ratios from sediment cores of two lakes. Our data reveal a dynamic Holocene temperature evolution, with reconstructed summer lake water temperatures spanning a range of ∼6-8 °C, and characterized by four phases. The Early Holocene was marked by an early onset (∼10.5 ka cal. BP) of insolation-driven Hypsithermal conditions, likely compounded by strengthening oceanic heat transport. This warm interval was interrupted by cooling between ∼10.5-8.3 ka cal. BP that we attribute to cooling effects from the melting Northern Hemisphere ice sheets. Temperatures declined throughout the Middle Holocene, following a gradual trend that was accentuated by two cooling steps between ∼7.8-7 ka cal. BP and around ∼4.4-4.3 ka cal. BP. These transitions coincide with a strengthening influence of Arctic water and sea-ice in the adjacent Fram Strait. During the Late Holocene (past 4 ka), temperature change decoupled from the still-declining insolation, and fluctuated around comparatively cold mean conditions. By showing that Holocene Svalbard temperatures were governed by an alternation of forcings, this study
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Johnson, Beverly J.; Fogel, Marilyn L.; Miller, Gifford H.
1998-07-01
An isotopic study of modern ostrich eggshell (OES) is presented as a calibration for terrestrial paleoenvironmental applications. The stable carbon and nitrogen isotope fractionations of OES were determined for various organic fractions of eggshell by measuring the isotopic ratios of modern OES samples collected from controlled settings (i.e., zoos and farms) and corresponding ostrich diet. These fractionations were used to evaluate the relationship between the isotope composition of OES laid by free-range birds living in South Africa and their environment. The carbon isotope composition of the total organic and inorganic fractions of OES were enriched by 2 and 16‰, respectively, relative to the diet. In natural settings, the δ 13C values of both the organic and inorganic fractions of OES reflected that of ambient vegetation, with a noted dietary preference for C 3 plants. The nitrogen isotope composition of the total organic fraction of OES was 3‰ enriched relative to the diet, and varied inversely with mean annual precipitation (MAP) in natural settings. A decrease in MAP of 100 mm was accompanied by an increase in δ 15N values of approximately 1‰. The oxygen isotope composition of the inorganic fraction of the OES varied linearly with that of the drinking water in controlled settings. However, in natural settings, the δ 18O of OES values were highly variable and are thought to be controlled primarily by the δ 18O of ingested plant leaf-water. The stability of the isotopic signal in the organic fraction of OES through geologic time was evaluated through a series of heating experiments. The δ 13C and δ 15N values of the total organic fraction of heated OES increased by less than 0.6 and 0.2‰ for carbon and nitrogen, respectively, in spite of extensive diagenetic alteration and changes in the amino acid composition of the samples. The results of this study indicate that the stable carbon and nitrogen isotope composition of OES is relatively stable
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Directory of Open Access Journals (Sweden)
Lucas Veríssimo Warren
Full Text Available ABSTRACT: Following the rise of metazoans, the beginning of bioclasticity and substrate competition, the saga of microbial mats was in a fluctuating decline in the end of the Neoproterozoic era. Increases in diversity during the Phanerozoic and punctual upturns in the microbial carbonate production occured after the events of global mass extinctions. Gradually along the Phanerozoic, the microbial colonies occupied isolated niches and grazers-free environments, characterized by physically and/or geochemically stressful conditions, such as those found in saline bays, alkaline lakes and hydrothermal or cold seep vents. Here we report one of the oldest occurrences of a vent camp coupled with cold seepage of methane in the geologic record, associated with well-preserved microbialites and elephant skin structures. During the seep activity, oxygen depletion and high salinity conditions are prohibitive for complex animal life, clearing the way to microbial colonies to flourish. Due to the co-occurrence of high adaptability and low competitiveness of microbial forms, they became highly specialized in stressful conditions. We argue that the sporadic microbial mat upturns in Earth’s history are not restricted to geological periods, following massive death of metazoan species; they also may occur in response to punctual paleoenvironmental conditions that enable microbial colonies to growth. Indeed, the Phanerozoic geological record is punctuated of these examples, in a kind of hide-and-seek game of Precambrian times.
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Longo, William M.; Huang, Yongsong; Yao, Yuan; Zhao, Jiaju; Giblin, Anne E.; Wang, Xian; Zech, Roland; Haberzettl, Torsten; Jardillier, Ludwig; Toney, Jaime; Liu, Zhonghui; Krivonogov, Sergey; Kolpakova, Marina; Chu, Guoqiang; D'Andrea, William J.; Harada, Naomi; Nagashima, Kana; Sato, Miyako; Yonenobu, Hitoshi; Yamada, Kazuyoshi; Gotanda, Katsuya; Shinozuka, Yoshitsugu
2018-06-01
Alkenones are C35-C42 polyunsaturated ketone lipids that are commonly employed to reconstruct changes in sea surface temperature. However, their use in coastal seas and saline lakes can be hindered by species-mixing effects. We recently hypothesized that freshwater lakes are immune to species-mixing effects because they appear to exclusively host Group I haptophyte algae, which produce a distinct distribution of alkenones with a relatively consistent response of alkenone unsaturation to temperature. To evaluate this hypothesis and explore the geographic extent of Group I haptophytes, we analyzed alkenones in sediment and suspended particulate matter samples from lakes distributed throughout the mid- and high latitudes of the Northern Hemisphere (n = 30). Our results indicate that Group I-type alkenone distributions are widespread in freshwater lakes from a range of different climates (mean annual air temperature range: -17.3-10.9 °C; mean annual precipitation range: 125-1657 mm yr-1; latitude range: 40-81°N), and are commonly found in neutral to basic lakes (pH > 7.0), including volcanic lakes and lakes with mafic bedrock. We show that these freshwater lakes do not feature alkenone distributions characteristic of Group II lacustrine haptophytes, providing support for the hypothesis that freshwater lakes are immune to species-mixing effects. In lakes that underwent temporal shifts in salinity, we observed mixed Group I/II alkenone distributions and the alkenone contributions from each group could be quantified with the RIK37 index. Additionally, we observed significant correlations of alkenone unsaturation (U37K) with seasonal and mean annual air temperature with this expanded freshwater lakes dataset, with the strongest correlation occurring during the spring transitional season (U37K = 0.029 * T - 0.49; r2 = 0.60; p < 0.0001). We present new sediment trap data from two lakes in northern Alaska (Toolik Lake, 68.632°N, 149.602°W; Lake E5, 68.643°N, 149.458
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Percolation Analysis of a Wiener Reconstruction of the IRAS 1.2 Jy Redshift Catalog
Yess, Capp; Shandarin, Sergei F.; Fisher, Karl B.
1997-01-01
We present percolation analyses of Wiener reconstructions of the IRAS 1.2 Jy redshift survey. There are 10 reconstructions of galaxy density fields in real space spanning the range β = 0.1-1.0, where β = Ω0.6/b, Ω is the present dimensionless density, and b is the bias factor. Our method uses the growth of the largest cluster statistic to characterize the topology of a density field, where Gaussian randomized versions of the reconstructions are used as standards for analysis. For the reconstruction volume of radius R ~ 100 h-1 Mpc, percolation analysis reveals a slight ``meatball'' topology for the real space, galaxy distribution of the IRAS survey.
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Algebraic reconstruction techniques for spectral reconstruction in diffuse optical tomography
International Nuclear Information System (INIS)
Brendel, Bernhard; Ziegler, Ronny; Nielsen, Tim
2008-01-01
Reconstruction in diffuse optical tomography (DOT) necessitates solving the diffusion equation, which is nonlinear with respect to the parameters that have to be reconstructed. Currently applied solving methods are based on the linearization of the equation. For spectral three-dimensional reconstruction, the emerging equation system is too large for direct inversion, but the application of iterative methods is feasible. Computational effort and speed of convergence of these iterative methods are crucial since they determine the computation time of the reconstruction. In this paper, the iterative methods algebraic reconstruction technique (ART) and conjugated gradients (CGs) as well as a new modified ART method are investigated for spectral DOT reconstruction. The aim of the modified ART scheme is to speed up the convergence by considering the specific conditions of spectral reconstruction. As a result, it converges much faster to favorable results than conventional ART and CG methods
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Molecular marker to identify radiolarian species -toward establishment of paleo-environmental proxy-
Ishitani, Y.
2017-12-01
Marine fossilized unicellular plankton are known to have many genetically divergent species (biological species) in the single morphological species and these biological species show the species-specific environments much more precisely than that of morphological species. Among these plankton, Radiolaria are one of the best candidates for time- and environmental-indicators in the modern and past oceans, because radiolarians are the only group which represent entire water column from shallow to deep waters. However, the ecology and evolution of radiolarian were traditionally studied in paleontology and paleoceanography by morphological species. Even Radiolaria has a huge potential for novel proxy of wide and deep environments, there is no criterion to identify the biological species. The motivation for this study is setting the quantitative delimitation to establish the biological species of radiolarians based on molecular data, for leading the future ecological and paleo-environmental study. Identification of the biological species by ribosomal DNA sequences are mainly based on two ways: one is the evolutionary distance of the small subunit (SSU) rDNA, the internal transcribed spacer region of ribosomal DNA (ITS1 and 2), and the large subunit (LSU) rDNA; and the other is the secondary structure of ITS2. In the present study, all four possible genetic markers (SSU, ITS1, ITS2, and LSU rDNA) were amplified from 232 individuals of five radiolarian morphological species and applied to examine the evolutionary distance and secondary structure of rDNA. Comprehensive survey clearly shows that evolutionary distance of ITS1 rDNA and the secondary structure of ITS2 is good to identify the species. Notably, evolutionary distance of ITS1 rDNA is possible to set the common delimitation to identify the biological species, as 0.225 substitution per site. The results show that the ITS1 and ITS 2 rDNA could be the criterion for radiolarian species identification.
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Directory of Open Access Journals (Sweden)
Assunta Florenzano
2017-10-01
Full Text Available Modern pollen spectra are an invaluable reference tool for paleoenvironmental and cultural landscape reconstructions, but the importance of knowing the pollen rain released from orchards remains underexplored. In particular, the role of cultivated trees is in past and current agrarian landscapes has not been fully investigated. Here, we present a pollen analysis of 70 surface soil samples taken from 12 olive groves in Basilicata and Tuscany, two regions of Italy that exemplify this cultivation in the Mediterranean basin. This study was carried out to assess the representativeness of Olea pollen in modern cultivations. Although many variables can influence the amount of pollen observed in soils, it was clear that most of the pollen was deposited below the trees in the olive groves. A rapid decline in the olive pollen percentages (c. 85% on average was found when comparing samples taken from IN vs. OUT of each grove. The mean percentages of Olea pollen obtained from the archeological sites close to the studied orchards suggest that olive groves were established far from the Roman farmhouses of Tuscany. Further south, in the core of the Mediterranean basin, the cultivation of Olea trees was likely situated ~500–1,000 m from the rural sites in Basilicata, and dated from the Hellenistic to the Medieval period.
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Regional compensation for statistical maximum likelihood reconstruction error of PET image pixels
International Nuclear Information System (INIS)
Forma, J; Ruotsalainen, U; Niemi, J A
2013-01-01
In positron emission tomography (PET), there is an increasing interest in studying not only the regional mean tracer concentration, but its variation arising from local differences in physiology, the tissue heterogeneity. However, in reconstructed images this physiological variation is shadowed by a large reconstruction error, which is caused by noisy data and the inversion of tomographic problem. We present a new procedure which can quantify the error variation in regional reconstructed values for given PET measurement, and reveal the remaining tissue heterogeneity. The error quantification is made by creating and reconstructing the noise realizations of virtual sinograms, which are statistically similar with the measured sinogram. Tests with physical phantom data show that the characterization of error variation and the true heterogeneity are possible, despite the existing model error when real measurement is considered. (paper)
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CT and MRI post-processing reconstructions in maxillo-facial trauma
International Nuclear Information System (INIS)
Olszycki, M.; Grzelak, P.; Stanczyk, L.; Kozakiewicz, M.; Arkuszewski, P.
2004-01-01
The aim of the study is to evaluate the reliability of CT and MR imaging and their post-processing reconstructions in the cases of facial trauma. CT studies were performed in 34 patients: 13 suspected of sinus fractures, 20 with orbital fractures and 1 with broken supraorbital bone fragment. MR imaging was also performed in 16 of these patients. The CT data were reconstructed in the 2D and 3D mode. The CT and MR images were digitally fused using an own program. The CT and MR images, their reconstructions and their fusion were evaluated according to the quality of visualization of a pathological lesions. Surgery was the method of reference. The reconstructed CT images allowed to recognize properly maxillary-oral fenestration in 5 cases. In 20 patients with orbital fracture, CT 3D reformations visualized well the morphology of the fissure. In 13 of these patients,the small bone fragments and orbital soft tissues prolapsed towards the maxillary sinus were depicted. Among the 16 patients who underwent MR examination, in 6 cases we revealed dislocation of the inferior rectus muscle towards the sinus, whereas in 9 cases MR images clearly excluded this pathology. In 1 patient, the digitally fused CT/MR images allowed to determine the actual position of small bone fragment within the muscle. In 1 patient with broken supraorbital bone fragment, evaluation of the 3D model allowed to exclude communication with intracranial space. In the next 8 patients with maxillo-zygomatic injures, the CT reconstructions did not support the diagnosis. The surgery correlated well with the post-processing CT and CT/MR fused images, contrary to the original CT ones which often were diagnostically insufficient. Spiral CT 2D and 3D-reconstructed images of the face allow to depict clearly the anatomical spatial relationships and the position, course and displacement of fractured fragments; thus, they support the surgery. The MR images of these patients reveal soft tissues clearly. The digital
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Silicon and Germanium (111) Surface Reconstruction
Hao, You Gong
Silicon (111) surface (7 x 7) reconstruction has been a long standing puzzle. For the last twenty years, various models were put forward to explain this reconstruction, but so far the problem still remains unsolved. Recent ion scattering and channeling (ISC), scanning tunneling microscopy (STM) and transmission electron diffraction (TED) experiments reveal some new results about the surface which greatly help investigators to establish better models. This work proposes a silicon (111) surface reconstruction mechanism, the raising and lowering mechanism which leads to benzene -like ring and flower (raised atom) building units. Based on these building units a (7 x 7) model is proposed, which is capable of explaining the STM and ISC experiment and several others. Furthermore the building units of the model can be used naturally to account for the germanium (111) surface c(2 x 8) reconstruction and other observed structures including (2 x 2), (5 x 5) and (7 x 7) for germanium as well as the (/3 x /3)R30 and (/19 x /19)R23.5 impurity induced structures for silicon, and the higher temperature disordered (1 x 1) structure for silicon. The model is closely related to the silicon (111) surface (2 x 1) reconstruction pi-bonded chain model, which is the most successful model for the reconstruction now. This provides an explanation for the rather low conversion temperature (560K) of the (2 x 1) to the (7 x 7). The model seems to meet some problems in the explanation of the TED result, which is explained very well by the dimer, adatom and stacking fault (DAS) model proposed by Takayanagi. In order to explain the TED result, a variation of the atomic scattering factor is proposed. Comparing the benzene-like ring model with the DAS model, the former needs more work to explain the TED result and the later has to find a way to explain the silicon (111) surface (1 x 1) disorder experiment.
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Popescu , Speranta - Maria
2008-01-01
version originale; My PhD and post-doctorate researches have focused on paleoclimatic, paleogeographical and paleoenvironmental reconstruction of the Mediterranean Basin and its adjacent seas (i.e. the residual former Paratethys) since 11 Ma. During this time-interval the Mediterranean marine and continental environments were affected by significant paleogeographic changes, forced by global climate and sea-level variability, plate tectonics and regional uplift of Alps s.l. and Carpathians. Tw...
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DEFF Research Database (Denmark)
Ramisch, Arne; Bens, Oliver; Buylaert, Jan-Pieter
2017-01-01
are sparse and often discontinuous. Hence, little is known about Holocene environmental change in this region. This study focuses on reconstructing paleoenvironmental change from the timing and provenance of fluvial deposits located within the Molopo Canyon, which connects the southern Kalahari drainage...... to the deposition of alluvial fills. These results suggest that the southern Kalahari Drainage remained endorheic and therefore disconnected from the Orange River throughout the Holocene....
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Jin, Y.; Mo, D.; Li, Y.; Ding, P.; Zong, Y.; Zhuang, Y.
2018-01-01
The well-preserved Maoshan paddy fields (4700–4300 bp) were built on an intermediate landscape between the foothills and alluvial plain of the Lower Yangtze River. Despite several interdisciplinary research, there has been a lack of detailed environmental and ecological data to contextualise the reconstructed rice farming practices within a wider paleo-environmental background. Our research provides key information on the chronology, vegetation, and long-term hydrological fluctuations at and ...
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Population growth and collapse in a multiagent model of the Kayenta Anasazi in Long House Valley
Axtell, Robert L.; Epstein, Joshua M.; Dean, Jeffrey S.; Gumerman, George J.; Swedlund, Alan C.; Harburger, Jason; Chakravarty, Shubha; Hammond, Ross; Parker, Jon; Parker, Miles
2002-01-01
Long House Valley in the Black Mesa area of northeastern Arizona (U.S.) was inhabited by the Kayenta Anasazi from about 1800 before Christ to about anno Domini 1300. These people were prehistoric ancestors of the modern Pueblo cultures of the Colorado Plateau. Paleoenvironmental research based on alluvial geomorphology, palynology, and dendroclimatology permits accurate quantitative reconstruction of annual fluctuations in potential agricultural production (kg of maize per hectare). The archa...
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Szabó, Péter; Kovács, János; Kocsis, László; Gasparik, Mihály; Vennemann, Torsten; Demény, Attila; Virág, Attila
2014-05-01
Stable isotope measurements of skeletal apatite from herbivorous mammals are often used to provide information on the terrestrial paleoenvironment and paleoclimate. In this study fossil teeth of Stephanorhinus Kretzoi 1942 (rhinoceros) and Mammut Blumenbach 1799 (mastodon), amongst others, were investigated from the Carpathian Basin. According to the biostratigraphy, the age of the samples has a range from Late Pliocene to Early Pleistocene. Reconstructing paleoclimate and paleoenvironment of this era is important as it can be an analogue for the future climate. Oxygen and carbon isotopic compositions were measured from the tooth enamel, because it is believed to be the most resistant to diagenetic alteration (e.g., Kohn & Cerling, 2002). The carbon isotopic composition in the carbonate fraction of apatite can be related to the diet of the animal (Kohn & Cerling, 2002). Hence, it can reflect the photosynthetic pathway (C3 or C4) of the plants consumed by these herbivores. The δ18O values were determined in the phosphate fraction of apatite. In the case of large mammals that are obligate drinkers, the δ18O values closely track those of the environmental water (Bryant & Froelich, 1995). Knowing the δ18O values of environmental water and relating it to local precipitation, the mean annual temperature (MAT) of the site can be calculated (Dansgaard, 1964). The δ13C values range from -10 to -15 o (VPDB). The result clearly shows that these animals consumed C3 plants. Most of the δ13C values indicate mixed grassland-open woodland rather than a closed canopy forest. Although there is variation in the δ18O values (mean 14.2 ± 1.0 o VSMOW, n=17), most of the samples would support a MAT range of 8-12 ° C. This is in good agreement with other proxies for the localities and time period (Kovács et al., 2013). Bryant, D.J. & Froelich, P.N. (1995) A model of oxygen-isotope fractionation in bodywater of large-mammals. Geochimica et Cosmochimica Acta 59, 4523
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Health insurance coverage and racial disparities in breast reconstruction after mastectomy.
Shippee, Tetyana P; Kozhimannil, Katy B; Rowan, Kathleen; Virnig, Beth A
2014-01-01
Breast reconstruction after mastectomy offers clinical, cosmetic, and psychological benefits compared with mastectomy alone. Although reconstruction rates have increased, racial/ethnic disparities in breast reconstruction persist. Insurance coverage facilitates access to care, but few studies have examined whether health insurance ameliorates disparities. We used the Nationwide Inpatient Sample for 2002 through 2006 to examine the relationships between health insurance coverage, race/ethnicity, and breast reconstruction rates among women who underwent mastectomy for breast cancer. We examined reconstruction rates as a function of the interaction of race and the primary payer (self-pay, private health insurance, government) while controlling for patient comorbidity, and we used generalized estimating equations to account for clustering and hospital characteristics. Minority women had lower breast reconstruction rates than White women (adjusted odds ratio [AOR], 0.57 for African American; AOR, 0.70 for Hispanic; AOR, 0.45 for Asian; p women (AOR, 0.33) and those with public coverage were less likely to undergo reconstruction (AOR, 0.35; p women. Racial/ethnic disparities were less prominent within insurance types. Minority women, whether privately or publicly insured, had lower odds of undergoing reconstruction than White women. Among those without insurance, reconstruction rates did not differ by race/ethnicity. Insurance facilitates access to care, but does not eliminate racial/ethnic disparities in reconstruction rates. Our findings-which reveal persistent health care disparities not explained by patient health status-should prompt efforts to promote both access to and use of beneficial covered services for women with breast cancer. Copyright © 2014 Jacobs Institute of Women's Health. Published by Elsevier Inc. All rights reserved.
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Rehanging Reynolds at the British Institution: Methods for Reconstructing Ephemeral Displays
Directory of Open Access Journals (Sweden)
Catherine Roach
2016-11-01
Full Text Available Reconstructions of historic exhibitions made with current technologies can present beguiling illusions, but they also put us in danger of recreating the past in our own image. This article and the accompanying reconstruction explore methods for representing lost displays, with an emphasis on visualizing uncertainty, illuminating process, and understanding the mediated nature of period images. These issues are highlighted in a partial recreation of a loan show held at the British Institution, London, in 1823, which featured the works of Sir Joshua Reynolds alongside continental old masters. This recreation demonstrates how speculative reconstructions can nonetheless shed light on ephemeral displays, revealing powerful visual and conceptual dialogues that took place on the crowded walls of nineteenth-century exhibitions.
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Weak lensing galaxy cluster field reconstruction
Jullo, E.; Pires, S.; Jauzac, M.; Kneib, J.-P.
2014-02-01
In this paper, we compare three methods to reconstruct galaxy cluster density fields with weak lensing data. The first method called FLens integrates an inpainting concept to invert the shear field with possible gaps, and a multi-scale entropy denoising procedure to remove the noise contained in the final reconstruction, that arises mostly from the random intrinsic shape of the galaxies. The second and third methods are based on a model of the density field made of a multi-scale grid of radial basis functions. In one case, the model parameters are computed with a linear inversion involving a singular value decomposition (SVD). In the other case, the model parameters are estimated using a Bayesian Monte Carlo Markov Chain optimization implemented in the lensing software LENSTOOL. Methods are compared on simulated data with varying galaxy density fields. We pay particular attention to the errors estimated with resampling. We find the multi-scale grid model optimized with Monte Carlo Markov Chain to provide the best results, but at high computational cost, especially when considering resampling. The SVD method is much faster but yields noisy maps, although this can be mitigated with resampling. The FLens method is a good compromise with fast computation, high signal-to-noise ratio reconstruction, but lower resolution maps. All three methods are applied to the MACS J0717+3745 galaxy cluster field, and reveal the filamentary structure discovered in Jauzac et al. We conclude that sensitive priors can help to get high signal-to-noise ratio, and unbiased reconstructions.
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Fingerprint image reconstruction for swipe sensor using Predictive Overlap Method
Directory of Open Access Journals (Sweden)
Mardiansyah Ahmad Zafrullah
2018-01-01
Full Text Available Swipe sensor is one of many biometric authentication sensor types that widely applied to embedded devices. The sensor produces an overlap on every pixel block of the image, so the picture requires a reconstruction process before heading to the feature extraction process. Conventional reconstruction methods require extensive computation, causing difficult to apply to embedded devices that have limited computing process. In this paper, image reconstruction is proposed using predictive overlap method, which determines the image block shift from the previous set of change data. The experiments were performed using 36 images generated by a swipe sensor with 128 x 8 pixels size of the area, where each image has an overlap in each block. The results reveal computation can increase up to 86.44% compared with conventional methods, with accuracy decreasing to 0.008% in average.
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Breast reconstruction after mastectomy
Directory of Open Access Journals (Sweden)
Daniel eSchmauss
2016-01-01
Full Text Available Breast cancer is the leading cause of cancer death in women worldwide. Its surgical approach has become less and less mutilating in the last decades. However, the overall number of breast reconstructions has significantly increased lately. Nowadays breast reconstruction should be individualized at its best, first of all taking into consideration oncological aspects of the tumor, neo-/adjuvant treatment and genetic predisposition, but also its timing (immediate versus delayed breast reconstruction, as well as the patient’s condition and wish. This article gives an overview over the various possibilities of breast reconstruction, including implant- and expander-based reconstruction, flap-based reconstruction (vascularized autologous tissue, the combination of implant and flap, reconstruction using non-vascularized autologous fat, as well as refinement surgery after breast reconstruction.
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Breast reconstruction - implants
Breast implants surgery; Mastectomy - breast reconstruction with implants; Breast cancer - breast reconstruction with implants ... harder to find a tumor if your breast cancer comes back. Getting breast implants does not take as long as breast reconstruction ...
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Does breast reconstruction impact the decision of patients to pursue cosmetic surgery?
Hsu, Vivian M; Tahiri, Youssef; Wes, Ari M; Yan, Chen; Selber, Jesse C; Nelson, Jonas A; Kovach, Stephen J; Serletti, Joseph M; Wu, Liza C
2014-12-01
Breast reconstruction is an integral component of breast cancer treatment, often aiding in restoring a patient's sense of femininity. However, many patients choose to have subsequent cosmetic surgery. The purpose of this study is to investigate the reasons that motivate patients to have cosmetic surgery after breast reconstruction. The authors performed a retrospective study examining patients who had breast reconstruction and subsequent cosmetic surgery at the University of Pennsylvania Health System between January 2005 and June 2012. This cohort received a questionnaire assessing the influences and impact of their reconstructive and cosmetic procedures. A total of 1,214 patients had breast reconstruction, with 113 patients (9.3%) undergoing cosmetic surgery after reconstruction. Of 42 survey respondents, 35 had autologous breast reconstruction (83.3%). Fifty-two cosmetic procedures were performed in survey respondents, including liposuction (26.9%) and facelift (15.4%). The most common reason for pursuing cosmetic surgery was the desire to improve self-image (n = 26, 61.9%), with 29 (69.0%) patients feeling more self-conscious of appearance after reconstruction. Body image satisfaction was significantly higher after cosmetic surgery (P = 0.0081). Interestingly, a multivariate analysis revealed that patients who experienced an improvement in body image after breast reconstruction were more likely to experience a further improvement after a cosmetic procedure (P = 0.031, OR = 17.83). Patients who were interested in cosmetic surgery prior to reconstruction were also more likely to experience an improvement in body image after cosmetic surgery (P = 0.012, OR = 22.63). Cosmetic surgery may improve body image satisfaction of breast reconstruction patients and help to further meet their expectations.
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van der Bilt, Willem G. M.; Bakke, Jostein; Vasskog, Kristian; D'Andrea, William J.; Bradley, Raymond S.; Ólafsdóttir, Sædis
2015-10-01
The Arctic is warming faster than anywhere else on Earth. Holocene proxy time-series are increasingly used to put this amplified response in perspective by understanding Arctic climate processes beyond the instrumental period. However, available datasets are scarce, unevenly distributed and often of coarse resolution. Glaciers are sensitive recorders of climate shifts and variations in rock-flour production transfer this signal to the lacustrine sediment archives of downstream lakes. Here, we present the first full Holocene record of continuous glacier variability on Svalbard from glacier-fed Lake Hajeren. This reconstruction is based on an undisturbed lake sediment core that covers the entire Holocene and resolves variability on centennial scales owing to 26 dating points. A toolbox of physical, geochemical (XRF) and magnetic proxies in combination with multivariate statistics has allowed us to fingerprint glacier activity in addition to other processes affecting the sediment record. Evidence from variations in sediment density, validated by changes in Ti concentrations, reveal glaciers remained present in the catchment following deglaciation prior to 11,300 cal BP, culminating in a Holocene maximum between 9.6 and 9.5 ka cal BP. Correspondence with freshwater pulses from Hudson Strait suggests that Early Holocene glacier advances were driven by the melting Laurentide Ice Sheet (LIS). We find that glaciers disappeared from the catchment between 7.4 and 6.7 ka cal BP, following a late Hypsithermal. Glacier reformation around 4250 cal BP marks the onset of the Neoglacial, supporting previous findings. Between 3380 and 3230 cal BP, we find evidence for a previously unreported centennial-scale glacier advance. Both events are concurrent with well-documented episodes of North Atlantic cooling. We argue that this brief forcing created suitable conditions for glaciers to reform in the catchment against a background of gradual orbital cooling. These findings highlight the
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Adaptive algebraic reconstruction technique
International Nuclear Information System (INIS)
Lu Wenkai; Yin Fangfang
2004-01-01
Algebraic reconstruction techniques (ART) are iterative procedures for reconstructing objects from their projections. It is proven that ART can be computationally efficient by carefully arranging the order in which the collected data are accessed during the reconstruction procedure and adaptively adjusting the relaxation parameters. In this paper, an adaptive algebraic reconstruction technique (AART), which adopts the same projection access scheme in multilevel scheme algebraic reconstruction technique (MLS-ART), is proposed. By introducing adaptive adjustment of the relaxation parameters during the reconstruction procedure, one-iteration AART can produce reconstructions with better quality, in comparison with one-iteration MLS-ART. Furthermore, AART outperforms MLS-ART with improved computational efficiency
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Tsang, Jason C H; Yu, Yong; Burke, Shannon; Buettner, Florian; Wang, Cui; Kolodziejczyk, Aleksandra A; Teichmann, Sarah A; Lu, Liming; Liu, Pentao
2015-09-21
Hematopoietic stem cells (HSCs) are a rare cell type with the ability of long-term self-renewal and multipotency to reconstitute all blood lineages. HSCs are typically purified from the bone marrow using cell surface markers. Recent studies have identified significant cellular heterogeneities in the HSC compartment with subsets of HSCs displaying lineage bias. We previously discovered that the transcription factor Bcl11a has critical functions in the lymphoid development of the HSC compartment. In this report, we employ single-cell transcriptomic analysis to dissect the molecular heterogeneities in HSCs. We profile the transcriptomes of 180 highly purified HSCs (Bcl11a (+/+) and Bcl11a (-/-)). Detailed analysis of the RNA-seq data identifies cell cycle activity as the major source of transcriptomic variation in the HSC compartment, which allows reconstruction of HSC cell cycle progression in silico. Single-cell RNA-seq profiling of Bcl11a (-/-) HSCs reveals abnormal proliferative phenotypes. Analysis of lineage gene expression suggests that the Bcl11a (-/-) HSCs are constituted of two distinct myeloerythroid-restricted subpopulations. Remarkably, similar myeloid-restricted cells could also be detected in the wild-type HSC compartment, suggesting selective elimination of lymphoid-competent HSCs after Bcl11a deletion. These defects are experimentally validated in serial transplantation experiments where Bcl11a (-/-) HSCs are myeloerythroid-restricted and defective in self-renewal. Our study demonstrates the power of single-cell transcriptomics in dissecting cellular process and lineage heterogeneities in stem cell compartments, and further reveals the molecular and cellular defects in the Bcl11a-deficient HSC compartment.
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Amit Kharat; Sahil Garg; Amarjit Singh; Vilas Kulkarni
2015-01-01
Localized anterior arthrofibrosis (cyclops lesion) is having around 1-9.8% frequency rate after anterior cruciate ligament (ACL) reconstruction. It has been reported to be a significant cause of loss of knee extension after reconstruction of the ACL of the knee. We present a case report of a patient with prior ACL reconstruction who presented with pain and loss of extension following surgery. MR imaging revealed the typical features of cyclops lesion. Repeat arthroscopy excision of the lesion...
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Okuda, Kyohei; Sakimoto, Shota; Fujii, Susumu; Ida, Tomonobu; Moriyama, Shigeru
The frame-of-reference using computed-tomography (CT) coordinate system on single-photon emission computed tomography (SPECT) reconstruction is one of the advanced characteristics of the xSPECT reconstruction system. The aim of this study was to reveal the influence of the high-resolution frame-of-reference on the xSPECT reconstruction. 99m Tc line-source phantom and National Electrical Manufacturers Association (NEMA) image quality phantom were scanned using the SPECT/CT system. xSPECT reconstructions were performed with the reference CT images in different sizes of the display field-of-view (DFOV) and pixel. The pixel sizes of the reconstructed xSPECT images were close to 2.4 mm, which is acquired as originally projection data, even if the reference CT resolution was varied. The full width at half maximum (FWHM) of the line-source, absolute recovery coefficient, and background variability of image quality phantom were independent on the sizes of DFOV in the reference CT images. The results of this study revealed that the image quality of the reconstructed xSPECT images is not influenced by the resolution of frame-of-reference on SPECT reconstruction.
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Blain, Hugues-Alexandre; Ruiz Zapata, Maria Blanca; Gil García, Maria José; Sesé, Carmen; Santonja, Manuel; Pérez-González, Alfredo
2017-10-01
In the eastern Iberian Peninsula, the archaeological site of Cuesta de la Bajada (Teruel, Spain) has produced some of the earliest evidence of Middle Paleolithic stone tool traditions together with evidence of equid and cervid carcasses defleshed by hominins. Based on the numerical age of 317-240 ka derived from OSL, ESR and AAR dating methods for the lower part of the Cuesta de la Bajada sedimentological sequence (level CB3), as well as the biochronological inferences for the small and large mammal associations, the site can be attributed to Marine Isotope Stage (MIS) 8 or the end of MIS 9. As amphibians and reptiles have precise environmental and climatic requirements and do not differ at species level from the extant herpetofauna of the Iberian Peninsula, they can contribute to the reconstruction of the landscape and climate. In this paper, the fossil amphibians and squamate reptiles from Cuesta de la Bajada are studied for the first time. The mutual ecogeographic range and habitat weighting methods were applied to the herpetofaunal assemblages to estimate quantitative data for the landscape and climate reconstructions. The climate is shown to have been colder and wetter than today in the interior of eastern Spain, with mean annual temperature up to 2.5 °C lower and mean annual precipitation slightly higher than at present. The monthly climatic reconstruction shows differences in the distribution of precipitation over the course of the year, with more abundant precipitation from late autumn to spring (i.e. from October to May), and more or less similar precipitation to today during the summer months (July and August). This suggests there was stronger rainfall seasonality between winter and summer than currently occurs. The paleoenvironmental reconstruction based on the herpetofaunal assemblage depicts a poorly forested (15-20%) patchy landscape with a large representation of dry meadows and scrubland habitats together with well-evidenced aquatic habitats. These
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The reconstruction of the training reactor of the Budapest Technical University
International Nuclear Information System (INIS)
Viragh, E.
1981-01-01
The reconstruction of the training reactor between 1978 and 1981 did not hinder the education and training activities of the University. Dosimetric measurements during the test run revealed no additional hazard from the elevation of power from 10 to 100 kW. (author)
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Chen, Xueli; Liang, Jimin; Hu, Hao; Qu, Xiaochao; Yang, Defu; Chen, Duofang; Zhu, Shouping; Tian, Jie
2012-03-01
Gastric cancer is the second cause of cancer-related death in the world, and it remains difficult to cure because it has been in late-stage once that is found. Early gastric cancer detection becomes an effective approach to decrease the gastric cancer mortality. Bioluminescence tomography (BLT) has been applied to detect early liver cancer and prostate cancer metastasis. However, the gastric cancer commonly originates from the gastric mucosa and grows outwards. The bioluminescent light will pass through a non-scattering region constructed by gastric pouch when it transports in tissues. Thus, the current BLT reconstruction algorithms based on the approximation model of radiative transfer equation are not optimal to handle this problem. To address the gastric cancer specific problem, this paper presents a novel reconstruction algorithm that uses a hybrid light transport model to describe the bioluminescent light propagation in tissues. The radiosity theory integrated with the diffusion equation to form the hybrid light transport model is utilized to describe light propagation in the non-scattering region. After the finite element discretization, the hybrid light transport model is converted into a minimization problem which fuses an l1 norm based regularization term to reveal the sparsity of bioluminescent source distribution. The performance of the reconstruction algorithm is first demonstrated with a digital mouse based simulation with the reconstruction error less than 1mm. An in situ gastric cancer-bearing nude mouse based experiment is then conducted. The primary result reveals the ability of the novel BLT reconstruction algorithm in early gastric cancer detection.
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The value of MRI three-dimensional reconstruction in diagnosis and therapy of prostate cancer
International Nuclear Information System (INIS)
Li Feiyu; Wang Xiaoying; Xu Yufeng; Xiao Jiangxi; Jiang Xuexiang
2006-01-01
Objective: To evaluate three-dimensional reconstruction of MRI images in diagnosis and therapy of prostate cancer. Methods: Twenty-eight patients with proven prostate cancers were recruited in this study. Seventeen of them were diagnosed as having prostate cancer according to the ultrasound guided systemic biopsy. Their MR examinations showed fourteen lesions in the peripheral zone and three in the central gland of the prostate. The other eleven patients underwent MR examination after a period of treatment, including endocrinetherapy and brachytherapy. Using endorectal coil, a series of T 2 -weighted images were acquired on the axial plane. These source images were processed by 3D-Doctor software to reconstruct into three-dimensional images. Results: In the fourteen patients with peripheral zone cancer, reconstruction images could display the 3D regions of cancer and the involvement of capsular. The outspread of central gland and the compression of peripheral zone in patients with central gland cancer could be revealed in the same way. The volumetric changes of the lesion and the prostate after endocrinetherapy could also be perceived through these 3 D images. Similarly, radioactive seeds were revealed in a spatial manner that could be easily evaluated. Conclusion: Three-dimensional reconstruction images were obtained in all patients. They were able to provide stereotyped information about the lesions and their surrounding tissues. MRI three-dimensional reconstruction can be an adjunctive tool in the evaluation of prostate lesions. (authors)
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Goodenberger, Martin H; Wagner-Bartak, Nicolaus A; Gupta, Shiva; Liu, Xinming; Yap, Ramon Q; Sun, Jia; Tamm, Eric P; Jensen, Corey T
The purpose of this study was to compare abdominopelvic computed tomography images reconstructed with adaptive statistical iterative reconstruction-V (ASIR-V) with model-based iterative reconstruction (Veo 3.0), ASIR, and filtered back projection (FBP). Abdominopelvic computed tomography scans for 36 patients (26 males and 10 females) were reconstructed using FBP, ASIR (80%), Veo 3.0, and ASIR-V (30%, 60%, 90%). Mean ± SD patient age was 32 ± 10 years with mean ± SD body mass index of 26.9 ± 4.4 kg/m. Images were reviewed by 2 independent readers in a blinded, randomized fashion. Hounsfield unit, noise, and contrast-to-noise ratio (CNR) values were calculated for each reconstruction algorithm for further comparison. Phantom evaluation of low-contrast detectability (LCD) and high-contrast resolution was performed. Adaptive statistical iterative reconstruction-V 30%, ASIR-V 60%, and ASIR 80% were generally superior qualitatively compared with ASIR-V 90%, Veo 3.0, and FBP (P ASIR-V 60% with respective CNR values of 5.54 ± 2.39, 8.78 ± 3.15, and 3.49 ± 1.77 (P ASIR 80% had the best and worst spatial resolution, respectively. Adaptive statistical iterative reconstruction-V 30% and ASIR-V 60% provided the best combination of qualitative and quantitative performance. Adaptive statistical iterative reconstruction 80% was equivalent qualitatively, but demonstrated inferior spatial resolution and LCD.
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Cryo-EM Structure Determination Using Segmented Helical Image Reconstruction.
Fromm, S A; Sachse, C
2016-01-01
Treating helices as single-particle-like segments followed by helical image reconstruction has become the method of choice for high-resolution structure determination of well-ordered helical viruses as well as flexible filaments. In this review, we will illustrate how the combination of latest hardware developments with optimized image processing routines have led to a series of near-atomic resolution structures of helical assemblies. Originally, the treatment of helices as a sequence of segments followed by Fourier-Bessel reconstruction revealed the potential to determine near-atomic resolution structures from helical specimens. In the meantime, real-space image processing of helices in a stack of single particles was developed and enabled the structure determination of specimens that resisted classical Fourier helical reconstruction and also facilitated high-resolution structure determination. Despite the progress in real-space analysis, the combination of Fourier and real-space processing is still commonly used to better estimate the symmetry parameters as the imposition of the correct helical symmetry is essential for high-resolution structure determination. Recent hardware advancement by the introduction of direct electron detectors has significantly enhanced the image quality and together with improved image processing procedures has made segmented helical reconstruction a very productive cryo-EM structure determination method. © 2016 Elsevier Inc. All rights reserved.
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Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing
DEFF Research Database (Denmark)
Gerlinger, Marco; Rowan, Andrew J.; Horswell, Stuart
2012-01-01
.RESULTS: Phylogenetic reconstruction revealed branched evolutionary tumor growth, with 63 to 69% of all somatic mutations not detectable across every tumor region. Intratumor heterogeneity was observed for a mutation within an autoinhibitory domain of the mammalian target of rapamycin (mTOR) kinase, correlating with S6...
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Image Reconstruction. Chapter 13
Energy Technology Data Exchange (ETDEWEB)
Nuyts, J. [Department of Nuclear Medicine and Medical Imaging Research Center, Katholieke Universiteit Leuven, Leuven (Belgium); Matej, S. [Medical Image Processing Group, Department of Radiology, University of Pennsylvania, Philadelphia, PA (United States)
2014-12-15
This chapter discusses how 2‑D or 3‑D images of tracer distribution can be reconstructed from a series of so-called projection images acquired with a gamma camera or a positron emission tomography (PET) system [13.1]. This is often called an ‘inverse problem’. The reconstruction is the inverse of the acquisition. The reconstruction is called an inverse problem because making software to compute the true tracer distribution from the acquired data turns out to be more difficult than the ‘forward’ direction, i.e. making software to simulate the acquisition. There are basically two approaches to image reconstruction: analytical reconstruction and iterative reconstruction. The analytical approach is based on mathematical inversion, yielding efficient, non-iterative reconstruction algorithms. In the iterative approach, the reconstruction problem is reduced to computing a finite number of image values from a finite number of measurements. That simplification enables the use of iterative instead of mathematical inversion. Iterative inversion tends to require more computer power, but it can cope with more complex (and hopefully more accurate) models of the acquisition process.
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Wang, J.; Ma, Q.; Huang, L.; Ju, J.; Guo, Y.; Lin, X.; Li, Y.; Zhu, L.
2017-12-01
The climate of Tibetan Plateau (TP) is mainly influenced by the Indian Ocean Summer Monsoon (IOSM) and the Westerlies. The interaction of these two air masses is therefore a crucial scientific issue to understand how they impact the climate in this area, especially in the geological times. However, constrained by the available archives, researches on this topic are still very few in the hinterland of the TP, especially covering the Last Glacial Maximum (LGM) period. Here we present a new lake sediment record retrieved from Taro Co covering the last 27 ka to elucidate how the IOSM and the Westerlies interact and the possible mechanisms. Taro Co (486 km2, Dmax: 132m, 4565 m a.s.l., currently closed), located on the central TP, is a fresh lake with the major supply from glaciers. Two parallel piston cores as well as several gravity cores were retrieved from the deepest parts. These cores were correlated based on high resolution XRF scanning and a continuous 1069 cm-long core was finally integrated. Chronology was determined by 210Pb, 137Cs and AMS 14C measurements. Multidiscipline analyses including grain size, total organic carbon (TOC), total nitrogen, diatom, ostracod, pollen and n-alkanes were accomplished to reconstruct paleoenvironmental changes. The lake level of Taro Co was low since 27 cal ka BP indicated by very coarse materials and diatom assemblages with gradually increased temperature and salinity (TOC and carbonate getting higher). The terrestrial water input decreased continuously reflected by such elements as Si, Ti, Fe, K. It is likely that there was a sedimentation gap between 961-954cm, corresponding to 23.4 to 18.6 cal ka BP probably demonstrated Taro Co was very shallow at that period. The first prominent abrupt change of most proxies was observed at 14.7 cal ka BP showing a great lake deepening which likely indicated an enhancement of IOSM. There were several spells with abrupt changes of cold/warm stages before the Holocene and the Younger Dryas
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Application of dual volume reconstruction technique in embolization of intracranial aneurysms
Directory of Open Access Journals (Sweden)
Xiang-hai ZHANG
2014-03-01
Full Text Available Objective To explore the value of dual volume reconstruction technique in Guglielmi detachable coil (GDC embolization of intracranial aneurysms. Methods Three-dimensional imaging data of 20 patients received GDC embolization of intracranial aneurysms from Jun. 2012 to Apr. 2013 were analyzed for dual volume reconstruction. The value of application of dual volume reconstruction was evaluated by the detection rate of coils bolus, degree of aneurysm occlusion, the length of aneurysm sac and aneurysm neck before and after embolization, and the characteristics and clinical value of the reconstructed images. Results A total of 20 coil boluses were detected by dual volume reconstruction images, and the detection rate was 100%. Among all of 20 patients, no visualization of contrast medium in the aneurysm was found in 13 patients, while contrast agent was found in the aneurysm sac in 3 patients and in the aneurysm neck in 4 patients. The length of aneurysm neck and sac was somewhat changed before and after embolization with no statistically significant difference (P>0.05. The dual volume reconstruction could reveal coil bolus, vessels, cranium and fusion images, and the aneurysms could be shown by different imaging modes according to the clinical requirement. Conclusion Dual volume reconstruction technique can display the location of coil bolus, degree of occlusion and aneurysm size, and evaluate the embolization effect by multifarious imaging modes, providing a great deal of information for the evaluation of GDC embolization of intracranial aneurysm. DOI: 10.11855/j.issn.0577-7402.2014.02.13
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Coordinate reconstruction using box reconstruction and projection of X-ray photo
International Nuclear Information System (INIS)
Achmad Suntoro
2011-01-01
Some mathematical formula have been derived for a process of reconstruction to define the coordinate of any point relative to a pre set coordinate system. The process of reconstruction uses a reconstruction box in which each edge's length of the box is known, each top-bottom face and left-right face of the box having a cross marker, and the top face and the right face of the box as plane projections by X-ray source in perspective projection -system. Using the data of the two X-ray projection images, any point inside the reconstruction box, as long as its projection is recorded in the two photos, will be determined its coordinate relative to the midpoint of the reconstruction box as the central point coordinates. (author)
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Levering, Jennifer; Fiedler, Tomas; Sieg, Antje; van Grinsven, Koen W A; Hering, Silvio; Veith, Nadine; Olivier, Brett G; Klett, Lara; Hugenholtz, Jeroen; Teusink, Bas; Kreikemeyer, Bernd; Kummer, Ursula
2016-08-20
Genome-scale metabolic models comprise stoichiometric relations between metabolites, as well as associations between genes and metabolic reactions and facilitate the analysis of metabolism. We computationally reconstructed the metabolic network of the lactic acid bacterium Streptococcus pyogenes M49. Initially, we based the reconstruction on genome annotations and already existing and curated metabolic networks of Bacillus subtilis, Escherichia coli, Lactobacillus plantarum and Lactococcus lactis. This initial draft was manually curated with the final reconstruction accounting for 480 genes associated with 576 reactions and 558 metabolites. In order to constrain the model further, we performed growth experiments of wild type and arcA deletion strains of S. pyogenes M49 in a chemically defined medium and calculated nutrient uptake and production fluxes. We additionally performed amino acid auxotrophy experiments to test the consistency of the model. The established genome-scale model can be used to understand the growth requirements of the human pathogen S. pyogenes and define optimal and suboptimal conditions, but also to describe differences and similarities between S. pyogenes and related lactic acid bacteria such as L. lactis in order to find strategies to reduce the growth of the pathogen and propose drug targets. Copyright © 2016 Elsevier B.V. All rights reserved.
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Nasolabial facial artery and vein as recipient vessels for midface microsurgical reconstruction.
Oh, Suk Joon; Jeon, Man Kyung; Koh, Sung Hoon
2011-05-01
Although free flap transfer is commonly performed to reconstruct facial defects, the submandibular facial artery and vein have historically been considered as adequate recipient vessels for microsurgical reconstruction. If the vascular pedicles of the free flap are short, vein grafts are necessary. The purpose of this study was to determine the indications for and effectiveness of using the nasolabial facial vessels for midfacial reconstruction. A retrospective chart review of 6 patients undergoing microsurgical reconstruction for defects of the face revealed 6 free tissue transfers in which the nasolabial facial artery and vein were considered for use as recipient vessels. Flap success rates were evaluated. Six patients (5 men and 1 woman) underwent 6 free flap transfers. Five anterior helix free flaps were used for the reconstruction of defects in the lower third of the nose. Nasal defects were due to trauma in 4 patients and squamous cell carcinoma in 1 patient. In 1 neurofibromatosis type 1 case, a radial forearm flap was used for reconstruction of the left orbital defect. The facial artery and vein in the nasolabial fold were used as the recipient artery and vein in every case. The mean length of follow-up was 5.8 years. All flaps survived. All patients were satisfied with the degree of aesthetic improvement after surgery.Use of the facial artery and vein in the nasolabial fold for facial reconstruction is reliable and safe. The nasolabial facial artery and vein should be considered as primary recipient vessels in microsurgical reconstruction of the midface.
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Ferruginous conditions: A dominant feature of the ocean through Earth’s history
DEFF Research Database (Denmark)
Poulton, Simon W.; Canfield, Donald Eugene
2011-01-01
, iron-rich (ferruginous) oceanic conditions often goes unrecognized, but refined techniques are currently providing evidence to suggest that ferruginous deep-ocean conditions were likely dominant throughout much of Earth's history. The prevalence of this redox state suggests that a detailed appraisal......The reconstruction of oceanic paleoredox conditions on Earth is essential for investigating links between biospheric oxygenation and major periods of biological innovation and extinction, and for unravelling feedback mechanisms associated with paleoenvironmental change. The occurrence of anoxic...
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Assessment of phylogenetic sensitivity for reconstructing HIV-1 epidemiological relationships.
Beloukas, Apostolos; Magiorkinis, Emmanouil; Magiorkinis, Gkikas; Zavitsanou, Asimina; Karamitros, Timokratis; Hatzakis, Angelos; Paraskevis, Dimitrios
2012-06-01
Phylogenetic analysis has been extensively used as a tool for the reconstruction of epidemiological relations for research or for forensic purposes. It was our objective to assess the sensitivity of different phylogenetic methods and various phylogenetic programs to reconstruct epidemiological links among HIV-1 infected patients that is the probability to reveal a true transmission relationship. Multiple datasets (90) were prepared consisting of HIV-1 sequences in protease (PR) and partial reverse transcriptase (RT) sampled from patients with documented epidemiological relationship (target population), and from unrelated individuals (control population) belonging to the same HIV-1 subtype as the target population. Each dataset varied regarding the number, the geographic origin and the transmission risk groups of the sequences among the control population. Phylogenetic trees were inferred by neighbor-joining (NJ), maximum likelihood heuristics (hML) and Bayesian methods. All clusters of sequences belonging to the target population were correctly reconstructed by NJ and Bayesian methods receiving high bootstrap and posterior probability (PP) support, respectively. On the other hand, TreePuzzle failed to reconstruct or provide significant support for several clusters; high puzzling step support was associated with the inclusion of control sequences from the same geographic area as the target population. In contrary, all clusters were correctly reconstructed by hML as implemented in PhyML 3.0 receiving high bootstrap support. We report that under the conditions of our study, hML using PhyML, NJ and Bayesian methods were the most sensitive for the reconstruction of epidemiological links mostly from sexually infected individuals. Copyright © 2012 Elsevier B.V. All rights reserved.
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Segmentation-DrivenTomographic Reconstruction
DEFF Research Database (Denmark)
Kongskov, Rasmus Dalgas
such that the segmentation subsequently can be carried out by use of a simple segmentation method, for instance just a thresholding method. We tested the advantages of going from a two-stage reconstruction method to a one stage segmentation-driven reconstruction method for the phase contrast tomography reconstruction......The tomographic reconstruction problem is concerned with creating a model of the interior of an object from some measured data, typically projections of the object. After reconstructing an object it is often desired to segment it, either automatically or manually. For computed tomography (CT...
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A new abdominal wall reconstruction strategy for giant omphalocele
Directory of Open Access Journals (Sweden)
Yoshiaki Takahashi
2018-04-01
Full Text Available The mortality rate of giant omphalocele has improved; however long-term follow-up has revealed umbilical defects and deformities after primary closure. We herein report the efficacy of a new abdominal wall reconstruction strategy combining a component separation technique with delayed natural and deep umbilicoplasty. Keywords: Giant omphalocele, Component separation technique, Delayed natural and deep umbilicoplasty, Abdominal wall defect
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Kotthoff, Ulrich; Groeneveld, Jeroen; Ash, Jeanine; Fanget, Anne-Sophie; Krupinski, Nadine Quintana; Peyron, Odile; Stepanova, Anna; Warnock, Jonathan; van Helmond, N.A.G.M.; Passey, Benjamin H.; Clausen, Ole Rono; Bennike, O.; Andrén, Elinor; Granoszewski, Wojciech; Andrén, Thomas; Filipsson, Helena L.; Solveig-Seidenkrantz, M.; Slomp, C.P.; Bauersachs, Thorsten
2017-01-01
Sediment records recovered from the Baltic Sea during Integrated Ocean Drilling Program Expedition 347 provide a unique opportunity to study paleoenvironmental and -climate change in central/northern Europe. Such studies contribute to a better understanding of how environmental parameters change in
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Kwon, Heejin; Cho, Jinhan; Oh, Jongyeong; Kim, Dongwon; Cho, Junghyun; Kim, Sanghyun; Lee, Sangyun; Lee, Jihyun
2015-10-01
To investigate whether reduced radiation dose abdominal CT images reconstructed with adaptive statistical iterative reconstruction V (ASIR-V) compromise the depiction of clinically competent features when compared with the currently used routine radiation dose CT images reconstructed with ASIR. 27 consecutive patients (mean body mass index: 23.55 kg m(-2) underwent CT of the abdomen at two time points. At the first time point, abdominal CT was scanned at 21.45 noise index levels of automatic current modulation at 120 kV. Images were reconstructed with 40% ASIR, the routine protocol of Dong-A University Hospital. At the second time point, follow-up scans were performed at 30 noise index levels. Images were reconstructed with filtered back projection (FBP), 40% ASIR, 30% ASIR-V, 50% ASIR-V and 70% ASIR-V for the reduced radiation dose. Both quantitative and qualitative analyses of image quality were conducted. The CT dose index was also recorded. At the follow-up study, the mean dose reduction relative to the currently used common radiation dose was 35.37% (range: 19-49%). The overall subjective image quality and diagnostic acceptability of the 50% ASIR-V scores at the reduced radiation dose were nearly identical to those recorded when using the initial routine-dose CT with 40% ASIR. Subjective ratings of the qualitative analysis revealed that of all reduced radiation dose CT series reconstructed, 30% ASIR-V and 50% ASIR-V were associated with higher image quality with lower noise and artefacts as well as good sharpness when compared with 40% ASIR and FBP. However, the sharpness score at 70% ASIR-V was considered to be worse than that at 40% ASIR. Objective image noise for 50% ASIR-V was 34.24% and 46.34% which was lower than 40% ASIR and FBP. Abdominal CT images reconstructed with ASIR-V facilitate radiation dose reductions of to 35% when compared with the ASIR. This study represents the first clinical research experiment to use ASIR-V, the newest version of
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Paradis, O. P.; Corsetti, F. A.; Bardsley, A.; Hammond, D. E.; Xu, X.; Walker, J. C.
2017-12-01
Ooids (laminated, carbonate coated grains) are ubiquitous in the geologic record in marine and lacustrine settings, and thus remain a common target for geochemical analysis to understand modern and ancient aqueous environments. However, the processes governing ooid formation remain unclear. Recently, radiocarbon dating has revealed that modern marine ooids grow slowly (Beaupre et al. 2015), and laboratory experiments have highlighted the importance of sediment transport and abrasion on net growth rates and ooid size (Trower et al. 2017). Ooid cortex structure includes micritic, tangential and/or radially oriented fabrics. Most modern marine ooids have tangential or micritic cortices, whereas many ancient ooids have radial cortices—thus, there is a need to understand how radial ooids in ancient rocks might inform us about their depositional environment. The Great Salt Lake (GSL), Utah, provides a unique environment to assess the growth rate of primary radial aragonitic ooids. Ooids collected near Antelope Island in the south arm of GSL were sieved, the 355-500 µm fraction was sequentially leached, and 14C of the evolved gas was analyzed to provide a time series of growth. The oldest inorganic carbon of this size fraction has an apparent 14C age of 6600 yr BP, with subsequent growth spanning over 6,000 years. Closed-basin lakes are particularly susceptible to a "reservoir effect" which results in anomalously old apparent radiocarbon ages. The 14C age of the modern dissolved inorganic carbon (DIC) of the south arm was measured to be 295 yr BP, a reservoir age comparable to estimates from lacustrine cave carbonates (McGee et al. 2012). Net growth rate of south arm ooids ranges between 0.01-0.025 µm per year. The δ13C of the outermost cortex suggests that the ooids resemble the modern DIC in the south arm water, suggesting ooids precipitate in equilibrium with lake water. Finer-scale structure in the δ13C of the ooid cortex through time suggests lake level changed
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Finkenbinder, M. S.; Abbott, M.; Stoner, J. S.; Dorfman, J. M.
2012-12-01
Here we present a new multi-proxy geochemical analysis of paleoenvironmental change inferred from sediment cores recovered from Burial Lake (68.434° N, 159.174° W; 430 m ASL) in northwest Alaska. Previous work on cores from 7.9 m water depth sampled at comparatively low resolution revealed basal sediments date to ~ 40,000 cal yr BP and an unconformity during a period of aridity around the Last Glacial Maximum (LGM). We therefore collected multiple overlapping Livingston cores from the lake depocenter (21.5 m water depth) in the summer of 2010 in an effort to develop a temporally continuous, high resolution record spanning prior to the LGM to the present. We focus our interpretations on a 6.51 m core developed through wiggle matching proxy data from core sites A10 and C10. We use traditional laboratory methods and investigate new approaches to assess changes in sedimentation and productivity. We are measuring dry bulk density, organic matter via Loss-on-ignition at 550° C, biogenic silica, magnetic susceptibility, grain size via laser diffractometry, and elemental abundances via scanning x-ray fluorescence (XRF). Future research seeks to test the reliability of two commonly used XRF proxies, for organic matter (incoherence/coherence ratios) and aquatic productivity (Si/Ti ratios). Age control is provided by 12 Accelerator Mass Spectrometry radiocarbon dates of discrete terrestrial macrofossils. Results from these analyses indicate that the depocenter core is continuous and the sediment record spans the last ~ 38,000 cal yr BP and most importantly contains sediments spanning the LGM. Preliminary geochemical results demonstrate substantial cyclicity in organic matter and aquatic productivity beginning in the late-glacial. We seek to analyze the periodicity of these proxies through spectral analysis, although initial observations suggest multi-century to millennial scale variability. In addition, we note the presence of two abrupt, non-linear transitions in organic
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Directory of Open Access Journals (Sweden)
Abdulrahman Al-Ahmari
2015-07-01
Full Text Available Mandible defects and its deformities are serious complications and its precise reconstruction is one of the most challenging tasks in oral maxillofacial surgery. The commercially available standard mandible implants are manually bended before surgery to custom fit the patient’s jaw. A slight mismatch in the plate and bone alignment may result in the implant failure. However, with the integration of computer-aided design, rapid prototyping, and advanced imaging systems (computed tomography or magnetic resonance imaging, it is possible to produce a customized mandible implant that can precisely fit the patient’s jaw. The aim of this article is to compare a new design of customized mandible implant (sinewave plate and compare it with the commonly used straight implant design. The finite element–simulated results reveal that the commonly used straight reconstruction plates are more prone to loosening of the screws due to its higher strain concentration on the screw hole when compared to newly designed sinewave reconstruction plate. Moreover, the straight plate is more sensitive to the chewing load variations and develops almost 20% increase in the stresses when compared to sinewave plate. The study reveals that the sinewave reconstruction plate can significantly enhance the stability and safety of the mandible implant.
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International Nuclear Information System (INIS)
Lesavoy, M.A.
1985-01-01
Vaginal reconstruction can be an uncomplicated and straightforward procedure when attention to detail is maintained. The Abbe-McIndoe procedure of lining the neovaginal canal with split-thickness skin grafts has become standard. The use of the inflatable Heyer-Schulte vaginal stent provides comfort to the patient and ease to the surgeon in maintaining approximation of the skin graft. For large vaginal and perineal defects, myocutaneous flaps such as the gracilis island have been extremely useful for correction of radiation-damaged tissue of the perineum or for the reconstruction of large ablative defects. Minimal morbidity and scarring ensue because the donor site can be closed primarily. With all vaginal reconstruction, a compliant patient is a necessity. The patient must wear a vaginal obturator for a minimum of 3 to 6 months postoperatively and is encouraged to use intercourse as an excellent obturator. In general, vaginal reconstruction can be an extremely gratifying procedure for both the functional and emotional well-being of patients
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[Trachea repair and reconstruction with new composite artificial trachea transplantation].
Liu, Wenliang; Xiao, Peng; Liang, Hengxing; An, Ran; Cheng, Gang; Yu, Fenglei
2013-03-01
To construct a new composite artificial trachea and to investigate the feasibility of trachea repair and reconstruction with the new composite artificial trachea transplantation in dogs. The basic skeleton of the new composite artificial trachea was polytetrafluoroethylene vascular prosthesis linked with titanium rings at both ends. Dualmesh was sutured on titanium rings. Sixteen dogs, weighing (14.9 +/- 2.0) kg, female or male, were selected. The 5 cm cervical trachea was resected to prepare the cervical trachea defect model. The trachea repair and reconstruction was performed with the new composite artificial trachea. Then fiberoptic bronchoscope examination, CT scan and three-dimensinal reconstruction were conducted at immediate, 1 month, and 6 months after operation. Gross observation and histological examination were conducted at 14 months to evaluate the repair and reconstruction efficacy. No dog died during operation of trachea reconstruction. One dog died of dyspnea at 37, 41, 55, 66, 140, and 274 days respectively because of anastomotic dehiscence and artificial trachea displacement; the other 10 dogs survived until 14 months. The fiberoptic bronchoscope examination, CT scan and three-dimensinal reconstruction showed that artificial tracheas were all in good location without twisting at immediate after operation; mild stenosis occurred and anastomoses had slight granulation in 6 dogs at 1 month; severe stenosis developed and anastomosis had more granulation in 1 dog and the other dogs were well alive without anastomotic stenosis at 6 months. At 14 months, gross observation revealed that outer surface of the artificial trachea were encapsulated by fibrous connective tissue in all of 10 dogs. Histological examination showed inflammatory infiltration and hyperplasia of fibrous tissue and no epithelium growth on the inner wall of the artificial trachea. The new composite artificial trachea can be used to repair and reconstruct defect of the trachea for a short
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Birkebak, Joshua M; Adamčík, Slavomír; Looney, Brian P; Matheny, P Brandon
2016-09-01
The genus Camarophyllopsis contains species with lamellate (agaricoid) basidiomes in the family Clavariaceae (Agaricales), a group otherwise dominated by club-like (clavarioid) or branched (coralloid) forms. Previous studies have suggested that species classified in Camarophyllopsis occur in two independent lineages. We reconstructed a multilocus phylogeny of the Clavaria-Camarophyllopsis-Clavicorona clade in the Clavariaceae using RNA polymerase II second largest subunit (rpb2), nuclear ribosomal 28S, and nuclear ribosomal ITS1-5.8S-ITS2 regions data and detected three independent groups of agaricoid fungi, including the genera Camarophyllopsis, Hodophilus, and Lamelloclavaria gen. nov, which distinctly differ in their pileipellis structure. In all, nine major lineages within the Clavaria-Camarophyllopsis-Clavicorona clade were recovered: Clavaria sensu stricto, Camarophyllopsis sensu stricto, Hodophilus, the Clavaria pullei clade, the Clavaria fumosa clade, Lamelloclavaria gen. nov., the Clavaria atrofusca clade, Holocoryne (= Clavaria sect. Holocoryne), and Clavicorona Clavaria is paraphyletic and represented by five clades. Additional gene sampling is necessary to determine and confirm relatedness of these lineages before splitting Clavaria into additional genera. © 2016 by The Mycological Society of America.
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Reconstruction of paleoenvironments by analyzing spatial shell orientation
Lukeneder, Susanne; Lukeneder, Alexander; Weber, Gerhard W.; Exner, Ulrike
2013-04-01
Fossils, especially their mass-occurrences, can be exploited as useful source of information about the depositional conditions. Particularly abundant fossils with elongated shape such as belemnites are useful indicators to draw conclusions about influencing factors (e.g. paleocurrents) of paleoenvironments. Orthocone cephalopods, gastropods, bivalves, foraminifers, vertebrate bones and others have been used so far in field-based spatial orientation studies (Flügel 2004). Normal coiled (planispiral) cephalopods can also provide such depositional information. A new method for reconstructing spatial shell orientation in 3D is presented here. A roughly 225 million-year-old (Carnian, Triassic) monospecific mass-occurrence of the ammonoid Kasimlarceltites krystyni from the Taurus Mountains in Turkey (project FWF P22109-B17; Lukeneder et al. 2012), embedded in limestone, is used for this pilot study. The most obvious method for digitization of the ammonoids, μ-computed tomography (CT), was not successful in this case due to the lack of density differences between the ammonoids (i.e. secondary calcite shells) and the embedding source rock (carbonate). Therefore we had to come back to the classic method of grinding, which, despite its invasive character, cannot always be disregarded, particularly if digital recording methods are not applicable and samples are large enough to sacrifice parts. A 150x170x140 mm block of the ammonoid bearing limestone bed has been grinded to 70 slices, with a distance of 2mm between each slice. By using a semi-automatic region growing algorithm of the 3D visualization software Amira, the ammonoids were segmented, and a 3D model of this mass-occurrence reconstructed. We used landmarks as well as trigonometric and vector-based calculations to compute the diameters and the spatial orientation of each ammonoid. For the diameters, the longest distance (longitudinal axis) of each shell (landmark a & b) and the orthogonal distance from this cord to
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Directory of Open Access Journals (Sweden)
Amit Kharat
2015-01-01
Full Text Available Localized anterior arthrofibrosis (cyclops lesion is having around 1-9.8% frequency rate after anterior cruciate ligament (ACL reconstruction. It has been reported to be a significant cause of loss of knee extension after reconstruction of the ACL of the knee. We present a case report of a patient with prior ACL reconstruction who presented with pain and loss of extension following surgery. MR imaging revealed the typical features of cyclops lesion. Repeat arthroscopy excision of the lesion is the only treatment to reduce the morbidity of the patient.
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Paleoenvironmental and paleoclimatic investigations on Isla de los Estados, Argentina
Björck, S.; Fernandez, M.; Hjort, C.; Ljung, K.; Martinez, O.; Möller, P.; Ponce, F.; Rabassa, J.; Roig, F.; Unkel, I.; Wohlfarth, B.
2007-05-01
The expedition in November-December 2005 to Isla de los Estados (Staten Island) off the southeastern tip of South America was a cooperative venture between Lund University (LU) and Stockholm University (SU) in Sweden and the CADIC-CONICET Institute in Ushuaia, Argentina. The aim of the expedition was threefold: (1) to extend the Swedish paleoclimatic "ATLANTIS"-project (Greenland, Iceland, Faroe Islands, Azores, Grenada, Tristan da Cunha; PI S Björck) to the southern part of the South American continent, (2) to connect earlier glacial and climate history reconstructions from the Antarctic Peninsula to equivalents north of the Drake Passage in southernmost South America, and (3) to complement paleo-information available from the Tierra del Fuego mainland with information from Isla de los Estados. Focus was on two areas in the northern and north-western part of the island, Bahía Colnett and Bahia Crossley. Detailed geomorphologic and stratigraphic mapping of glacial deposits were combined with sampling sediments for OSL dating. To reconstruct the paleoclimatic development of Isla de los Estados since the last ice retreat, four main peat bog/lake sites were cored and sampled. In addition, living trees of Nothofagus and old logs preserved in the peat were sampled for dendrochronological and dendroclimatological studies. Preliminary results show that the deglaciation of the study area occurred before 16500 cal yr BP. Detailed multi- proxy analyses of the four sequences are under way and first results will be presented.
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Breast Reconstruction After Mastectomy
... Cancer Prevention Genetics of Breast & Gynecologic Cancers Breast Cancer Screening Research Breast Reconstruction After Mastectomy On This Page What is breast reconstruction? How do surgeons use implants to reconstruct a woman’s breast? How do surgeons ...
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Evidence-Based ACL Reconstruction
Directory of Open Access Journals (Sweden)
E. Carlos RODRIGUEZ-MERCHAN
2015-01-01
Full Text Available There is controversy in the literature regarding a number of topics related to anterior cruciate ligament (ACLreconstruction. The purpose of this article is to answer the following questions: 1 Bone patellar tendon bone (BPTB reconstruction or hamstring reconstruction (HR; 2 Double bundle or single bundle; 3 Allograft or authograft; 4 Early or late reconstruction; 5 Rate of return to sports after ACL reconstruction; 6 Rate of osteoarthritis after ACL reconstruction. A Cochrane Library and PubMed (MEDLINE search of systematic reviews and meta-analysis related to ACL reconstruction was performed. The key words were: ACL reconstruction, systematic reviews and meta-analysis. The main criteria for selection were that the articles were systematic reviews and meta-analysesfocused on the aforementioned questions. Sixty-nine articles were found, but only 26 were selected and reviewed because they had a high grade (I-II of evidence. BPTB-R was associated with better postoperative knee stability but with a higher rate of morbidity. However, the results of both procedures in terms of functional outcome in the long-term were similar. The double-bundle ACL reconstruction technique showed better outcomes in rotational laxity, although functional recovery was similar between single-bundle and double-bundle. Autograft yielded better results than allograft. There was no difference between early and delayed reconstruction. 82% of patients were able to return to some kind of sport participation. 28% of patients presented radiological signs of osteoarthritis with a follow-up of minimum 10 years.
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A Composite Buccal Flap for Alar Based Defect Reconstruction: A Technical Note
Directory of Open Access Journals (Sweden)
A. Khojasteh
2011-12-01
Full Text Available It is difficult to reconstruct an alar defect with cartilage involvement. Here in the authors report a case of traumatic alar loss during childhood in which an alar reconstruction was carried out with a composite auricular graft put over the pedicle buccal flap which was rotated and passed through the intraoral side. The lining skin and auricular cartilage for the flap was obtained from the auricular region which was acceptable for the patient. All procedures were performed under general anesthesia. One year follow up revealed satisfactory results with minimal contracture of the graft.
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Complex Empiricism and the Quantification of Uncertainty in Paleoclimate Reconstructions
Brumble, K. C.
2014-12-01
Because the global climate cannot be observed directly, and because of vast and noisy data sets, climate science is a rich field to study how computational statistics informs what it means to do empirical science. Traditionally held virtues of empirical science and empirical methods like reproducibility, independence, and straightforward observation are complicated by representational choices involved in statistical modeling and data handling. Examining how climate reconstructions instantiate complicated empirical relationships between model, data, and predictions reveals that the path from data to prediction does not match traditional conceptions of empirical inference either. Rather, the empirical inferences involved are "complex" in that they require articulation of a good deal of statistical processing wherein assumptions are adopted and representational decisions made, often in the face of substantial uncertainties. Proxy reconstructions are both statistical and paleoclimate science activities aimed at using a variety of proxies to reconstruct past climate behavior. Paleoclimate proxy reconstructions also involve complex data handling and statistical refinement, leading to the current emphasis in the field on the quantification of uncertainty in reconstructions. In this presentation I explore how the processing needed for the correlation of diverse, large, and messy data sets necessitate the explicit quantification of the uncertainties stemming from wrangling proxies into manageable suites. I also address how semi-empirical pseudo-proxy methods allow for the exploration of signal detection in data sets, and as intermediary steps for statistical experimentation.
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Spiral CT of the pancreas. The value of small field-of-view targeted reconstruction
International Nuclear Information System (INIS)
Nishiharu, T.; Yamashita, Y.; Ogata, I.; Sumi, S.; Mitsuzaki, K.; Takahashi, M.
1998-01-01
Purpose: To compare the value of a retrospective targeted high-resolution spiral CT to the standard reconstruction technique in the assessment of pancreatic diseases. Material and methods: Spiral CT pancreatic images of a standard-size reconstruction protocol were compared prospectively with those of a retrospective targeted high-spatial-resolution reconstruction protocol in 30 patients. Prior to clinical evaluation, a phantom study was performed to evaluate the spatial resolution and signal-to-noise ratio of both protocols. Results: The high-resolution protocol achieved a good signal-to-noise ratio with acceptable spatial resolution. Phantom studies revealed increased image noise (+17%) with an increase in spatial resolution (+100%). In patients studied with the high-resolution protocol, the increase in noise was not significant but there was a marked improvement in the definition of small details. Conclusion: Images obtained with a targeted high-spatial-resolution reconstruction protocol showed superior lesion definition and vascular opacification compared with those obtained with a standard-size reconstruction protocol. This technique may have potential in the evaluation of small pancreatic abnormalities. (orig.)
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Continuous analog of multiplicative algebraic reconstruction technique for computed tomography
Tateishi, Kiyoko; Yamaguchi, Yusaku; Abou Al-Ola, Omar M.; Kojima, Takeshi; Yoshinaga, Tetsuya
2016-03-01
We propose a hybrid dynamical system as a continuous analog to the block-iterative multiplicative algebraic reconstruction technique (BI-MART), which is a well-known iterative image reconstruction algorithm for computed tomography. The hybrid system is described by a switched nonlinear system with a piecewise smooth vector field or differential equation and, for consistent inverse problems, the convergence of non-negatively constrained solutions to a globally stable equilibrium is guaranteed by the Lyapunov theorem. Namely, we can prove theoretically that a weighted Kullback-Leibler divergence measure can be a common Lyapunov function for the switched system. We show that discretizing the differential equation by using the first-order approximation (Euler's method) based on the geometric multiplicative calculus leads to the same iterative formula of the BI-MART with the scaling parameter as a time-step of numerical discretization. The present paper is the first to reveal that a kind of iterative image reconstruction algorithm is constructed by the discretization of a continuous-time dynamical system for solving tomographic inverse problems. Iterative algorithms with not only the Euler method but also the Runge-Kutta methods of lower-orders applied for discretizing the continuous-time system can be used for image reconstruction. A numerical example showing the characteristics of the discretized iterative methods is presented.
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[Reconstructive methods after Fournier gangrene].
Wallner, C; Behr, B; Ring, A; Mikhail, B D; Lehnhardt, M; Daigeler, A
2016-04-01
Fournier's gangrene is a variant of the necrotizing fasciitis restricted to the perineal and genital region. It presents as an acute life-threatening disease and demands rapid surgical debridement, resulting in large soft tissue defects. Various reconstructive methods have to be applied to reconstitute functionality and aesthetics. The objective of this work is to identify different reconstructive methods in the literature and compare them to our current concepts for reconstructing defects caused by Fournier gangrene. Analysis of the current literature and our reconstructive methods on Fournier gangrene. The Fournier gangrene is an emergency requiring rapid, calculated antibiotic treatment and radical surgical debridement. After the acute phase of the disease, appropriate reconstructive methods are indicated. The planning of the reconstruction of the defect depends on many factors, especially functional and aesthetic demands. Scrotal reconstruction requires a higher aesthetic and functional reconstructive degree than perineal cutaneous wounds. In general, thorough wound hygiene, proper pre-operative planning, and careful consideration of the patient's demands are essential for successful reconstruction. In the literature, various methods for reconstruction after Fournier gangrene are described. Reconstruction with a flap is required for a good functional result in complex regions as the scrotum and penis, while cutaneous wounds can be managed through skin grafting. Patient compliance and tissue demand are crucial factors in the decision-making process.
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Lahr, Daniel J G; Grant, Jessica R; Katz, Laura A
2013-05-01
Tubulinea is a phylogenetically stable higher-level taxon within Amoebozoa, morphologically characterized by monoaxially streaming and cylindrical pseudopods. Contemporary phylogenetic reconstructions have largely relied on SSU rDNA, and to a lesser extent, on actin genes to reveal the relationships among these organisms. Additionally, the test (shell) forming Arcellinida, one of the most species-rich amoebozoan groups, is nested within Tubulinea and suffers from substantial under-sampling of taxa. Here, we increase taxonomic and gene sampling within the Tubulinea, characterizing molecular data for 22 taxa and six genes (SSU rDNA, actin, α- and β-tubulin, elongation factor 2 and the 14-3-3 regulatory protein). We perform concatenated phylogenetic analyses using these genes as well as approximately unbiased tests to assess evolutionary relationships within the Tubulinea. We confirm the monophyly of Tubulinea and four of the six included lineages (Echinamoeboidea, Leptomyxida, Amoebida and Poseidonida). Arcellinida and Hartmanellidae, the remaining lineages, are not monophyletic in our reconstructions, although statistical testing does not allow rejection of either group. We further investigate more fine-grained morphological evolution of previously defined groups, concluding that relationships within Arcellinida are more consistent with general test and aperture shape than with test composition. We also discuss the implications of this phylogeny for interpretations of the Precambrian fossil record of testate amoebae. Copyright © 2013 Elsevier GmbH. All rights reserved.
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Gravvanis, Andreas; Smith, Roger W
2010-10-01
The esthetic outcome is dictated essentially not only by the position, size, and shape of the reconstructed breast, but also by the extra scaring involved. In the present study, we conducted a visual analog scale survey to compare the esthetic outcome in delayed autologous breast reconstruction following two different abdominal flaps inset. Twenty-five patients had their reconstruction using the Single-esthetic Unit principle and were compared with 25 patients that their breast was reconstructed using the Two-Esthetic Unit principle. Photographic images were formulated to a PowerPoint presentation and cosmetic outcomes were assessed from 30 physicians, by means of a Questionnaire and a visual analog scale. Our data showed that the single-esthetic unit breast reconstruction presents significant advantages over the traditional two-esthetic units, due to inconspicuous flap reconstruction, better position of the inframammary fold, and more natural transition from native and reconstructed tissues. Moreover, patient self-evaluation of esthetic outcome and quality of life showed that single-esthetic unit reconstruction is associated with higher patient satisfaction, therefore should be considered the method of choice. © 2010 Wiley-Liss, Inc.
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A reconstruction of Maxwell model for effective thermal conductivity of composite materials
International Nuclear Information System (INIS)
Xu, J.Z.; Gao, B.Z.; Kang, F.Y.
2016-01-01
Highlights: • Deficiencies were found in classical Maxwell model for effective thermal conductivity. • Maxwell model was reconstructed based on potential mean-field theory. • Reconstructed Maxwell model was extended with particle–particle contact resistance. • Predictions by reconstructed Maxwell model agree excellently with experimental data. - Abstract: Composite materials consisting of high thermal conductive fillers and polymer matrix are often used as thermal interface materials to dissipate heat generated from mechanical and electronic devices. The prediction of effective thermal conductivity of composites remains as a critical issue due to its dependence on considerably factors. Most models for prediction are based on the analog between electric potential and temperature that satisfy the Laplace equation under steady condition. Maxwell was the first to derive the effective electric resistivity of composites by examining the far-field spherical harmonic solution of Laplace equation perturbed by a sphere of different resistivity, and his model was considered as classical. However, a close review of Maxwell’s derivation reveals that there exist several controversial issues (deficiencies) inherent in his model. In this study, we reconstruct the Maxwell model based on a potential mean-field theory to resolve these issues. For composites made of continuum matrix and particle fillers, the contact resistance among particles was introduced in the reconstruction of Maxwell model. The newly reconstructed Maxwell model with contact resistivity as a fitting parameter is shown to fit excellently to experimental data over wide ranges of particle concentration and mean particle diameter. The scope of applicability of the reconstructed Maxwell model is also discussed using the contact resistivity as a parameter.
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Our Clinical Experience in Lower Eyelid Reconstruction and Comparison of Reconstruction Techniques.
Directory of Open Access Journals (Sweden)
Erol Kesiktas
2011-03-01
Full Text Available Lower eyelid reconstruction after tumor resection or trauma is extremely important in order to obtain the protection of the globe and it requires extra care. The aim of this study is to evaluate the techniques that we use in lower eyelid reconstruction. Between the years of 1999-2009, a total of 23 patients who had lower eyelid defects due to tumor resection (21 patients or trauma (2 patients were reconstructed by the use of various flaps. Eleven of the patients were women and twelve of them were men. Average age was 60.7. For the reconstruction 13 Mustarde flap, 9 bipedicled Tripier flap, 1 Tenzel flap and 1 bipedicled infraorbital flaps were used. Average postoperative follow up interval was 35 months. (18-47 months. Flap necrosis, function loss in the lower lid were not experienced in any of the patients. Cosmetically satisfactory results were obtained. In lower eyelid reconstruction, the size of the defect and the amount of skin around must be carefully evaluated and should be considered while planning the reconstruction. [Cukurova Med J 2011; 36(1: 15-23
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Live event reconstruction in an optically read out GEM-based TPC
Brunbauer, F. M.; Galgóczi, G.; Gonzalez Diaz, D.; Oliveri, E.; Resnati, F.; Ropelewski, L.; Streli, C.; Thuiner, P.; van Stenis, M.
2018-04-01
Combining strong signal amplification made possible by Gaseous Electron Multipliers (GEMs) with the high spatial resolution provided by optical readout, highly performing radiation detectors can be realized. An optically read out GEM-based Time Projection Chamber (TPC) is presented. The device permits 3D track reconstruction by combining the 2D projections obtained with a CCD camera with timing information from a photomultiplier tube. Owing to the intuitive 2D representation of the tracks in the images and to automated control, data acquisition and event reconstruction algorithms, the optically read out TPC permits live display of reconstructed tracks in three dimensions. An Ar/CF4 (80/20%) gas mixture was used to maximize scintillation yield in the visible wavelength region matching the quantum efficiency of the camera. The device is integrated in a UHV-grade vessel allowing for precise control of the gas composition and purity. Long term studies in sealed mode operation revealed a minor decrease in the scintillation light intensity.
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Stress field reconstruction in an active mudslide
Baroň, Ivo; Kernstocková, Markéta; Melichar, Rostislav
2017-07-01
Meso-scale structures from gravitational slope deformation observed in landslides and deep-seated gravitational slope failures are very similar to those of endogenous ones. Therefore we applied palaeostress analysis of fault-slip data for reconstructing the stress field of an active mudslide in Pechgraben, Austria. This complex compound landslide has developed in clayey colluvium and shale and was activated after a certain period of dormancy in June 2013. During the active motion on June 12, 2013, 73 fault-slip traces at 9 locations were measured within the landslide body. The heterogeneous fault-slip data were processed in term of palaeostresses, the reconstructed palaeostress tensor being characterized by the orientations of the three principal stress axes and the stress ratio (which provides the shape of the stress ellipsoid). The results of the palaeostress analysis were compared to airborne laser scan digital terrain models that revealed dynamics and superficial displacements of the moving mass prior and after our survey. The results were generally in good agreement with the observed landslide displacement pattern and with the anticipated stress regime according to Mohr-Coulomb failure criteria and Anderson's theory. The compressional regime was mostly registered at the toe in areas, where a compressional stress field is expected during previous mass-movement stages, or at margins loaded by subsequent landslide bodies from above. On the other hand, extension regimes were identified at the head scarps of secondary slides, subsequently on bulged ridges at the toe and in the zone of horst-and-graben structures in the lower central part of the main landslide body, where the basal slip surface probably had locally convex character. Strike-slip regimes, as well as oblique normal or oblique reverse regimes were observed at the lateral margins of the landslide bodies. The directions of principal stresses could be used as markers of landslide movement directions
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Rio de la Plata river: as paleoenvironmental focus using diatoms as proxies
International Nuclear Information System (INIS)
Perez, L; Garcia-Rodriguez, F; Hanebuth, T.
2012-01-01
The objective of this study is the reconstruction of the environmental history of the Rio de la Plata system in relation to the anthropogenic impact and historical changes in the flow with emphasis on salinity variations during the late Holocene. For this reason it was analyzed the composition of diatoms (grouped in freshwater (D), saline (S) and marine (M))
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GEBHARDT, Holger; ĆORIĆ, Stjepan; DARGA, Robert; BRIGUGLIO, Antonino; SCHENK, Bettina; WERNER, Winfried; ANDERSEN, Nils; SAMES, Benjamin
2015-01-01
The northern Tethyan margin is a key region for determining environmental changes associated with the collision of continental and oceanic tectonic plates and Alpine orogeny. Herein we investigated Middle to Late Eocene neritic to bathyal sediments deposited during an interval of unstable climatic conditions. In order to quantify paleoenvironmental changes, we developed a detailed age model based on biozonations of planktic foraminifera, calcareous nannoplankton, and larger benthic foraminifera. The section at Adelholzen covers the almost complete Lutetian Stage (calcareous nannoplankton zones NP15a-16, planktic foraminifera zones E8-11, shallow benthic (foraminifera) zones SBZ13-15) and large parts of the Priabonian Stage (NP18-20, E14/15), while the intermediate Bartonian Stage (NP17) is completely missing. Foraminiferal, calcareous nannoplankton, and macrofossil assemblages were analyzed for changes in paleo-water depth, mixing and stratification, paleo-primary productivity (pPP), food supply, and bottom water oxygenation. Paleo-water depth estimates range from 50 m (middle neritic, early Lutetian) to nearly 500 m (upper bathyal, late Priabonian). The combination of assemblage composition, planktic and benthic foraminiferal accumulation rates, and derived parameters (carbon-flux to sea floor, pPP) enabled us to identify a series of distinct paleoceanographic events of at least regional significance. Such events are characterized by considerable changes in primary productivity or reduced bottom water ventilation. Calculated pPP-values indicate oligotrophic conditions throughout. PMID:26346423
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Levering, J.; Fiedler, T.; Sieg, A.; van Grinsven, K.W.A.; Hering, S.; Veith, N.; Olivier, B.G.; Klett, L.; Hugenholtz, J.; Teusink, B.; Kreikemeyer, B.; Kummer, U.
2016-01-01
Genome-scale metabolic models comprise stoichiometric relations between metabolites, as well as associations between genes and metabolic reactions and facilitate the analysis of metabolism. We computationally reconstructed the metabolic network of the lactic acid bacterium Streptococcus pyogenes
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Breast Reconstruction Following Cancer Treatment.
Gerber, Bernd; Marx, Mario; Untch, Michael; Faridi, Andree
2015-08-31
About 8000 breast reconstructions after mastectomy are per - formed in Germany each year. It has become more difficult to advise patients because of the wide variety of heterologous and autologous techniques that are now available and because of changes in the recommendations about radiotherapy. This article is based on a review of pertinent articles (2005-2014) that were retrieved by a selective search employing the search terms "mastectomy" and "breast reconstruction." The goal of reconstruction is to achieve an oncologically safe and aestically satisfactory result for the patient over the long term. Heterologous, i.e., implant-based, breast reconstruction (IBR) and autologous breast reconstruction (ABR) are complementary techniques. Immediate reconstruction preserves the skin of the breast and its natural form and prevents the psychological trauma associated with mastectomy. If post-mastectomy radiotherapy (PMRT) is not indicated, implant-based reconstruction with or without a net/acellular dermal matrix (ADM) is a common option. Complications such as seroma formation, infection, and explantation are significantly more common when an ADM is used (15.3% vs. 5.4% ). If PMRT is performed, then the complication rate of implant-based breast reconstruction is 1 to 48% ; in particular, Baker grade III/IV capsular fibrosis occurs in 7 to 22% of patients, and the prosthesis must be explanted in 9 to 41% . Primary or, preferably, secondary autologous reconstruction is an alternative. The results of ABR are more stable over the long term, but the operation is markedly more complex. Autologous breast reconstruction after PMRT does not increase the risk of serious complications (20.5% vs. 17.9% without radiotherapy). No randomized controlled trials have yet been conducted to compare the reconstructive techniques with each other. If radiotherapy will not be performed, immediate reconstruction with an implant is recommended. On the other hand, if post-mastectomy radiotherapy
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Sensory Evolution and Ecology of Early Turtles Revealed by Digital Endocranial Reconstructions
Directory of Open Access Journals (Sweden)
Stephan Lautenschlager
2018-02-01
Full Text Available In the past few years, new fossil finds and novel methodological approaches have prompted intensive discussions about the phylogenetic affinities of turtles and rekindled the debate on their ecological origin, with very distinct scenarios, such as fossoriality and aquatic habitat occupation, proposed for the earliest stem-turtles. While research has focused largely on the origin of the anapsid skull and unique postcranial anatomy, little is known about the endocranial anatomy of turtles. Here, we provide 3D digital reconstructions and comparative descriptions of the brain, nasal cavity, neurovascular structures and endosseous labyrinth of Proganochelys quenstedti, one of the earliest stem-turtles, as well as other turtle taxa. Our results demonstrate that P. quenstedti retained a simple tube-like brain morphology with poorly differentiated regions and mediocre hearing and vision, but a well-developed olfactory sense. Endocast shape analysis indicates that an increase in size and regionalization of the brain took place in the course of turtle evolution, achieving an endocast diversity comparable to other amniote groups. Based on the new evidence presented herein, we further conclude that P. quenstedti was a highly terrestrial, but most likely not fossorial, taxon.
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Permutationally invariant state reconstruction
DEFF Research Database (Denmark)
Moroder, Tobias; Hyllus, Philipp; Tóth, Géza
2012-01-01
Feasible tomography schemes for large particle numbers must possess, besides an appropriate data acquisition protocol, an efficient way to reconstruct the density operator from the observed finite data set. Since state reconstruction typically requires the solution of a nonlinear large-scale opti...... optimization, which has clear advantages regarding speed, control and accuracy in comparison to commonly employed numerical routines. First prototype implementations easily allow reconstruction of a state of 20 qubits in a few minutes on a standard computer.......-scale optimization problem, this is a major challenge in the design of scalable tomography schemes. Here we present an efficient state reconstruction scheme for permutationally invariant quantum state tomography. It works for all common state-of-the-art reconstruction principles, including, in particular, maximum...
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Fast image reconstruction for Compton camera using stochastic origin ensemble approach.
Andreyev, Andriy; Sitek, Arkadiusz; Celler, Anna
2011-01-01
Compton camera has been proposed as a potential imaging tool in astronomy, industry, homeland security, and medical diagnostics. Due to the inherent geometrical complexity of Compton camera data, image reconstruction of distributed sources can be ineffective and/or time-consuming when using standard techniques such as filtered backprojection or maximum likelihood-expectation maximization (ML-EM). In this article, the authors demonstrate a fast reconstruction of Compton camera data using a novel stochastic origin ensembles (SOE) approach based on Markov chains. During image reconstruction, the origins of the measured events are randomly assigned to locations on conical surfaces, which are the Compton camera analogs of lines-of-responses in PET. Therefore, the image is defined as an ensemble of origin locations of all possible event origins. During the course of reconstruction, the origins of events are stochastically moved and the acceptance of the new event origin is determined by the predefined acceptance probability, which is proportional to the change in event density. For example, if the event density at the new location is higher than in the previous location, the new position is always accepted. After several iterations, the reconstructed distribution of origins converges to a quasistationary state which can be voxelized and displayed. Comparison with the list-mode ML-EM reveals that the postfiltered SOE algorithm has similar performance in terms of image quality while clearly outperforming ML-EM in relation to reconstruction time. In this study, the authors have implemented and tested a new image reconstruction algorithm for the Compton camera based on the stochastic origin ensembles with Markov chains. The algorithm uses list-mode data, is parallelizable, and can be used for any Compton camera geometry. SOE algorithm clearly outperforms list-mode ML-EM for simple Compton camera geometry in terms of reconstruction time. The difference in computational time
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Directory of Open Access Journals (Sweden)
Alyssa J Reiffel
Full Text Available Autologous techniques for the reconstruction of pediatric microtia often result in suboptimal aesthetic outcomes and morbidity at the costal cartilage donor site. We therefore sought to combine digital photogrammetry with CAD/CAM techniques to develop collagen type I hydrogel scaffolds and their respective molds that would precisely mimic the normal anatomy of the patient-specific external ear as well as recapitulate the complex biomechanical properties of native auricular elastic cartilage while avoiding the morbidity of traditional autologous reconstructions.Three-dimensional structures of normal pediatric ears were digitized and converted to virtual solids for mold design. Image-based synthetic reconstructions of these ears were fabricated from collagen type I hydrogels. Half were seeded with bovine auricular chondrocytes. Cellular and acellular constructs were implanted subcutaneously in the dorsa of nude rats and harvested after 1 and 3 months.Gross inspection revealed that acellular implants had significantly decreased in size by 1 month. Cellular constructs retained their contour/projection from the animals' dorsa, even after 3 months. Post-harvest weight of cellular constructs was significantly greater than that of acellular constructs after 1 and 3 months. Safranin O-staining revealed that cellular constructs demonstrated evidence of a self-assembled perichondrial layer and copious neocartilage deposition. Verhoeff staining of 1 month cellular constructs revealed de novo elastic cartilage deposition, which was even more extensive and robust after 3 months. The equilibrium modulus and hydraulic permeability of cellular constructs were not significantly different from native bovine auricular cartilage after 3 months.We have developed high-fidelity, biocompatible, patient-specific tissue-engineered constructs for auricular reconstruction which largely mimic the native auricle both biomechanically and histologically, even after an extended
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Tomographic reconstruction of OH* chemiluminescence in two interacting turbulent flames
International Nuclear Information System (INIS)
Worth, Nicholas A; Dawson, James R
2013-01-01
The tomographic reconstruction of OH* chemiluminescence was performed on two interacting turbulent premixed bluff-body stabilized flames under steady flow conditions and acoustic excitation. These measurements elucidate the complex three-dimensional (3D) vortex–flame interactions which have previously not been accessible. The experiment was performed using a single camera and intensifier, with multiple views acquired by repositioning the camera, permitting calculation of the mean and phase-averaged volumetric OH* distributions. The reconstructed flame structure and phase-averaged dynamics are compared with OH planar laser-induced fluorescence and flame surface density measurements for the first time. The volumetric data revealed that the large-scale vortex–flame structures formed along the shear layers of each flame collide when the two flames meet, resulting in complex 3D flame structures in between the two flames. With a fairly simple experimental setup, it is shown that the tomographic reconstruction of OH* chemiluminescence in forced flames is a powerful tool that can yield important physical insights into large-scale 3D flame dynamics that are important in combustion instability. (paper)
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International Nuclear Information System (INIS)
Kadrmas, Dan J.; Karimi, Seemeen S.; Frey, Eric C.; Tsui, Benjamin M.W.
1998-01-01
Accurate scatter compensation in SPECT can be performed by modelling the scatter response function during the reconstruction process. This method is called reconstruction-based scatter compensation (RBSC). It has been shown that RBSC has a number of advantages over other methods of compensating for scatter, but using RBSC for fully 3D compensation has resulted in prohibitively long reconstruction times. In this work we propose two new methods that can be used in conjunction with existing methods to achieve marked reductions in RBSC reconstruction times. The first method, coarse-grid scatter modelling, significantly accelerates the scatter model by exploiting the fact that scatter is dominated by low-frequency information. The second method, intermittent RBSC, further accelerates the reconstruction process by limiting the number of iterations during which scatter is modelled. The fast implementations were evaluated using a Monte Carlo simulated experiment of the 3D MCAT phantom with 99m Tc tracer, and also using experimentally acquired data with 201 Tl tracer. Results indicated that these fast methods can reconstruct, with fully 3D compensation, images very similar to those obtained using standard RBSC methods, and in reconstruction times that are an order of magnitude shorter. Using these methods, fully 3D iterative reconstruction with RBSC can be performed well within the realm of clinically realistic times (under 10 minutes for 64x64x24 image reconstruction). (author)
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Update on orbital reconstruction.
Chen, Chien-Tzung; Chen, Yu-Ray
2010-08-01
Orbital trauma is common and frequently complicated by ocular injuries. The recent literature on orbital fracture is analyzed with emphasis on epidemiological data assessment, surgical timing, method of approach and reconstruction materials. Computed tomographic (CT) scan has become a routine evaluation tool for orbital trauma, and mobile CT can be applied intraoperatively if necessary. Concomitant serious ocular injury should be carefully evaluated preoperatively. Patients presenting with nonresolving oculocardiac reflex, 'white-eyed' blowout fracture, or diplopia with a positive forced duction test and CT evidence of orbital tissue entrapment require early surgical repair. Otherwise, enophthalmos can be corrected by late surgery with a similar outcome to early surgery. The use of an endoscope-assisted approach for orbital reconstruction continues to grow, offering an alternative method. Advances in alloplastic materials have improved surgical outcome and shortened operating time. In this review of modern orbital reconstruction, several controversial issues such as surgical indication, surgical timing, method of approach and choice of reconstruction material are discussed. Preoperative fine-cut CT image and thorough ophthalmologic examination are key elements to determine surgical indications. The choice of surgical approach and reconstruction materials much depends on the surgeon's experience and the reconstruction area. Prefabricated alloplastic implants together with image software and stereolithographic models are significant advances that help to more accurately reconstruct the traumatized orbit. The recent evolution of orbit reconstruction improves functional and aesthetic results and minimizes surgical complications.
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The American cranberry (Vaccinium macrocarpon Ait.) mitochondrial genome was assembled and reconstructed from whole genome 454 Roche GS-FLX and Illumina shotgun sequences. Compared with other Asterids, the reconstruction of the genome revealed an average size mitochondrion (459,678 nt) with comparat...
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Broach, K.; Paytan, A.; Street, J. H.
2014-12-01
Climate change is expected to increasingly stress water resources in drought-prone areas such as the American Southwest or Central America. Understanding patterns in precipitation frequency and intensity in the recent past are critical to accurately modeling groundwater recharge potential and managing diminishing resources in conjunction with rapid urbanization (e.g. Yucatan, Mexico). Wet and dry seasons on the Yucatan Peninsula are affected by the Intertropical Convergence Zone (ITCZ) which can exacerbate drought as the climate warms. This study focuses on precipitation patterns during the late Holocene recorded in foraminifera (Ammonia beccarii, Elphidium sp., Quinqueloculina sp.) and ostracods (suspected Hemicyprideis nichuptensis) along a transect in Celestun Lagoon near Merida, Yucatan, Mexico. Submarine groundwater springs feed the north terminus of the lagoon resulting in δ18O and Mg gradients toward the ocean which oscillate in response to increased or decreased precipitation. Mg/Ca ratios from the north (4.59) and south (3.08) lagoon suggest warmer waters in the shallow northern end, resulting in evaporation and confounding the δ18O values there (upper lagoon = 2.1‰, middle lagoon = 0.3‰, lower lagoon = 1.5‰). B/Ca ratios remain fairly constant (average range 27.3-33.2) despite increasing B concentrations toward the southern mouth, suggesting a concurrent increase in dissolved calcium down the lagoon and thus a lower Ca signal in spite of the karst source of springs. Of the four species tested, A. beccarii and H. nichuptensis yielded the most similar results ([Ca] ~ 150 ppm). Replicate analyses are needed for Elphidium sp. and Quinqueloculina sp. due to their low sample size and signal variability which suggests they may not be ideal candidates for paleoenvironmental reconstruction in Celestun Lagoon and possible other marginal environments around the Yucatan Peninsula.
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Dental microwear textures: reconstructing diets of fossil mammals
International Nuclear Information System (INIS)
DeSantis, Larisa R G
2016-01-01
Dietary information of fossil mammals can be revealed via the analysis of tooth morphology, tooth wear, tooth geochemistry, and the microscopic wear patterns on tooth surfaces resulting from food processing. Although dental microwear has long been used by anthropologists and paleontologists to clarify diets in a diversity of mammals, until recently these methods focused on the counting of wear features (e.g., pits and scratches) from two-dimensional surfaces (typically via scanning electron microscopes or low-magnification light microscopes). The analysis of dental microwear textures can instead reveal dietary information in a broad range of herbivorous, omnivorous, and carnivorous mammals by characterizing microscopic tooth surfaces in three-dimensions, without the counting of individual surface features. To date, dental microwear textures in ungulates, xenarthrans, marsupials, carnivorans, and primates (including humans and their ancestors) are correlated with known dietary behavior in extant taxa and reconstruct ancient diets in a diversity of prehistoric mammals. For example, tough versus hard object feeding can be characterized across disparate phylogenetic groups and can distinguish grazers, folivorous, and flesh consumers (tougher food consumers) from woody browsers, frugivores, and bone consumers (harder object feeders). This paper reviews how dental microwear textures can be useful to reconstructing diets in a broad array of living and extinct mammals, with commentary on areas of future research. (topical review)
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Yang, Fuqiang; Zhang, Dinghua; Huang, Kuidong; Gao, Zongzhao; Yang, YaFei
2018-02-01
Based on the discrete algebraic reconstruction technique (DART), this study aims to address and test a new improved algorithm applied to incomplete projection data to generate a high quality reconstruction image by reducing the artifacts and noise in computed tomography. For the incomplete projections, an augmented Lagrangian based on compressed sensing is first used in the initial reconstruction for segmentation of the DART to get higher contrast graphics for boundary and non-boundary pixels. Then, the block matching 3D filtering operator was used to suppress the noise and to improve the gray distribution of the reconstructed image. Finally, simulation studies on the polychromatic spectrum were performed to test the performance of the new algorithm. Study results show a significant improvement in the signal-to-noise ratios (SNRs) and average gradients (AGs) of the images reconstructed from incomplete data. The SNRs and AGs of the new images reconstructed by DART-ALBM were on average 30%-40% and 10% higher than the images reconstructed by DART algorithms. Since the improved DART-ALBM algorithm has a better robustness to limited-view reconstruction, which not only makes the edge of the image clear but also makes the gray distribution of non-boundary pixels better, it has the potential to improve image quality from incomplete projections or sparse projections.
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BES-II fast data reconstruction
International Nuclear Information System (INIS)
Rong Gang; Zhang Jiawen; Guo Yiqing; Zhang Shaoqiang; Zhao Dixin
2002-01-01
The BES-II fast data reconstruction is reported. Based on PC FARM and/or a 'Distributed Clustered Linux PC System', BES-II fast data reconstruction system is set up. With this system the BES-II data can be fully reconstructed in about 20 minutes after data collection. It takes only 12 minutes to fully reconstruct 30000 events, collected with BES-II detector at BEPC Collider, with a P III-800 PC. The detector performance can be examined based on fully reconstructed data in about 20 minutes after data taking in the BES-II experiment
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Subjective versus objective assessment of breast reconstruction.
Henseler, Helga; Smith, Joanna; Bowman, Adrian; Khambay, Balvinder S; Ju, Xiangyang; Ayoub, Ashraf; Ray, Arup K
2013-05-01
To date breast assessment has been conducted mainly subjectively. However lately validated objective three-dimensional (3D) imaging was developed. The study aimed to assess breast reconstruction subjectively and objectively and conduct a comparison. In forty-four patients after immediate unilateral breast reconstruction with solely the extended latissimus dorsi flap the breast was captured by validated 3D imaging method and standardized 2D photography. Breast symmetry was subjectively evaluated by six experts who applied the Harris score giving a mark of 1-4 for a poor to excellent result. An error study was conducted by examination of the intra and inter-observer agreement and agreement on controls. By Procrustes analysis an objective asymmetry score was obtained and compared to the subjective assessment. The subjective assessment showed that the inter-observer agreement was good or substantial (p-value: value: fair (p-values: 0.159, 0.134, 0.099) to substantial (p-value: 0.005) intra-observer agreement. The objective assessment revealed that the reconstructed breast showed a significantly smaller volume compared to the opposite side and that the average asymmetry score was 0.052, ranging from 0.019 to 0.136. When comparing the subjective and objective method the relationship between the two scores was highly significant. Subjective breast assessment lacked accuracy and reproducibility. This was the first error study of subjective breast assessment versus an objective validated 3D imaging method based on true 3D parameters. The substantial agreement between established subjective breast assessment and new validated objective method supported the value of the later and we expect its future role to expand. Copyright © 2013 British Association of Plastic, Reconstructive and Aesthetic Surgeons. Published by Elsevier Ltd. All rights reserved.
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Directory of Open Access Journals (Sweden)
Arne Vladimir Blackman
2014-07-01
Full Text Available Accurate 3D reconstruction of neurons is vital for applications linking anatomy and physiology. Reconstructions are typically created using Neurolucida after biocytin histology (BH. An alternative inexpensive and fast method is to use freeware such as Neuromantic to reconstruct from fluorescence imaging (FI stacks acquired using 2-photon laser-scanning microscopy during physiological recording. We compare these two methods with respect to morphometry, cell classification, and multicompartmental modeling in the NEURON simulation environment. Quantitative morphological analysis of the same cells reconstructed using both methods reveals that whilst biocytin reconstructions facilitate tracing of more distal collaterals, both methods are comparable in representing the overall morphology: automated clustering of reconstructions from both methods successfully separates neocortical basket cells from pyramidal cells but not BH from FI reconstructions. BH reconstructions suffer more from tissue shrinkage and compression artifacts than FI reconstructions do. FI reconstructions, on the other hand, consistently have larger process diameters. Consequently, significant differences in NEURON modeling of excitatory post-synaptic potential (EPSP forward propagation are seen between the two methods, with FI reconstructions exhibiting smaller depolarizations. Simulated action potential backpropagation (bAP, however, is indistinguishable between reconstructions obtained with the two methods. In our hands, BH reconstructions are necessary for NEURON modeling and detailed morphological tracing, and thus remain state of the art, although they are more labor intensive, more expensive, and suffer from a higher failure rate. However, for a subset of anatomical applications such as cell type identification, FI reconstructions are superior, because of indistinguishable classification performance with greater ease of use, essentially 100% success rate, and lower cost.
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Directory of Open Access Journals (Sweden)
Le Wang
2015-11-01
Full Text Available Based on phase space reconstruction and fractal dynamics in nonlinear dynamics, a method is proposed to extract and analyze the dynamics of the rotating stall in the impeller of centrifugal compressor, and some numerical examples are given to verify the results as well. First, the rotating stall of an existing low speed centrifugal compressor (LSCC is numerically simulated, and the time series of pressure in the rotating stall is obtained at various locations near the impeller outlet. Then, the phase space reconstruction is applied to these pressure time series, and a low-dimensional dynamical system, which the dynamics properties are included in, is reconstructed. In phase space reconstruction, C–C method is used to obtain the key parameters, such as time delay and the embedding dimension of the reconstructed phase space. Further, the fractal characteristics of the rotating stall are analyzed in detail, and the fractal dimensions are given for some examples to measure the complexity of the flow in the post-rotating stall. The results show that the fractal structures could reveal the intrinsic dynamics of the rotating stall flow and could be considered as a characteristic to identify the rotating stall.
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Directory of Open Access Journals (Sweden)
Julia G. Lyon
2016-02-01
Full Text Available Inflammatory myofibroblastic tumors (IMT are rare tumors of the respiratory tract that most commonly occur in the lung and are rarely seen in the trachea. They present most often in young patients. We report on a case of an IMT of the carina in a seven year old girl, requiring carinal resection and reconstruction with a novel technique in pediatric airway surgery. Attempts at endoscopic excision of the carinal IMT were unsuccessful. An open approach for resection of the involved carina, distal trachea, and proximal mainstem bronchi was performed via sternotomy and cardiopulmonary bypass. The resulting triangular defect in the trachea and bronchi was reconstructed with anastomosis of the proximal trachea and left mainstem bronchus using a rotational flap of the right lateral mainstem bronchial wall. The remaining right mainstem bronchus was anastomosed, end to side, to the intact trachea proximal to the primary anastomosis. Bronchoscopy and MRI 22 months post resection and reconstruction revealed a healthy neo-carina and patent distal airway with no evidence of recurrent IMT. Pediatric patients with carinal inflammatory myofibroblastic tumors can be successfully managed with open resection and reconstruction of the airway.
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International Nuclear Information System (INIS)
Yusa, Noritaka; Chen, Zhenmao; Miya, Kenzo; Cheng, Weiying
2002-01-01
This paper proposes a reliability parameter to enhance an version scheme developed by authors. The scheme is based upon an artificial neural network that simulates mapping between eddy current signals and crack profiles. One of the biggest advantages of the scheme is that it can deal with conductive cracks, which is necessary to reconstruct natural cracks. However, it has one significant disadvantage: the reliability of reconstructed profiles was unknown. The parameter provides an index for assessment of the crack profile and overcomes this disadvantage. After the parameter is validated by reconstruction of simulated cracks, it is applied to reconstruction of natural cracks that occurred in steam generator tubes of a pressurized water reactor. It is revealed that the parameter is applicable to not only simulated cracks but also natural ones. (author)
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Mandibular reconstruction in the radiated patient: the role of osteocutaneous free tissue transfers
International Nuclear Information System (INIS)
Duncan, M.J.; Manktelow, R.T.; Zuker, R.M.; Rosen, I.B.
1985-01-01
This paper discusses our experience with the second metatarsal and iliac crest osteocutaneous transfers for mandibular reconstruction. The prime indication for this type of reconstruction was for anterior mandibular defects when the patient had been previously resected. Midbody to midbody defects were reconstructed with the metatarsal and larger defects with the iliac crest. In most cases, an osteotomy was done to create a mental angle. The evaluation of speech, oral continence, and swallowing revealed good results in all patients unless lip or tongue resection compromised function. Facial contour was excellent in metatarsal reconstructions. The iliac crest cutaneous flap provided a generous supply of skin for both intraoral reconstruction and external skin coverage but tended to be bulky, particularly when used in the submental area. Thirty three of 36 flaps survived completely. Flap losses were due to anastomosis thrombosis (1), pedicle compression (1), and pedicle destruction during exploration for suspected carotid blowout (1). Ninety three percent of bone junctions developed a solid bony union despite the mandible having had a full therapeutic dose of preoperative radiation. Despite wound infections in 8 patients, and intraoral dehiscence with bone exposure in 12 patients, all but one of these transfers went on to good bony union without infection in the bone graft
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Mandibular reconstruction in the radiated patient: the role of osteocutaneous free tissue transfers
Energy Technology Data Exchange (ETDEWEB)
Duncan, M.J.; Manktelow, R.T.; Zuker, R.M.; Rosen, I.B.
1985-12-01
This paper discusses our experience with the second metatarsal and iliac crest osteocutaneous transfers for mandibular reconstruction. The prime indication for this type of reconstruction was for anterior mandibular defects when the patient had been previously resected. Midbody to midbody defects were reconstructed with the metatarsal and larger defects with the iliac crest. In most cases, an osteotomy was done to create a mental angle. The evaluation of speech, oral continence, and swallowing revealed good results in all patients unless lip or tongue resection compromised function. Facial contour was excellent in metatarsal reconstructions. The iliac crest cutaneous flap provided a generous supply of skin for both intraoral reconstruction and external skin coverage but tended to be bulky, particularly when used in the submental area. Thirty three of 36 flaps survived completely. Flap losses were due to anastomosis thrombosis (1), pedicle compression (1), and pedicle destruction during exploration for suspected carotid blowout (1). Ninety three percent of bone junctions developed a solid bony union despite the mandible having had a full therapeutic dose of preoperative radiation. Despite wound infections in 8 patients, and intraoral dehiscence with bone exposure in 12 patients, all but one of these transfers went on to good bony union without infection in the bone graft.
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Directory of Open Access Journals (Sweden)
Satish Shervegar
2015-10-01
Full Text Available Background: No uniform consensus exists to decide type of fixation for arthroscopic anterior cruciate ligament reconstruction. Hypothsis: There is similar functional outcome after rigid fix compared to other methods of fixation which has been published. Study design: Retrospective observational study. Methods: A total of 50 patients underwent arthroscopic anterior cruciate ligament reconstruction with hamstring tendons using femoral Rigid fix cross-pin and interference screw tibial fixation. The evaluation methods were clinical examination, IKDC scores, Lysholm and pre injury and post reconstruction Tegner score. Patients were followed up from minimum of 6 months to 4 year seven months. Results: C In our study of sample size 50 we found that mean age of patients was 30.8 Years with male preponderance. Mean post operative IKDC and Lysholm score has been 75.6 and 84.4 respectively.Mean Tegner pre-injury score and post reconstruction score has been 5.4 and 4.26 .Box plot comparison of pre injury and post operativeTegner score reveals a statistically significant difference with respect to paired t test P Conclusions: Arthroscopic anterior cruciate ligament reconstruction with femoral rigid fix cross pins and tibial interference screws results in comparable short term to midterm functional results compared to other types of fixation
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Directory of Open Access Journals (Sweden)
Satish Shervegar
2015-09-01
Full Text Available Background: No uniform consensus exists to decide type of fixation for arthroscopic anterior cruciate ligament reconstruction. Hypothsis: There is similar functional outcome after rigid fix compared to other methods of fixation which has been published. Study design: Retrospective observational study. Methods: A total of 50 patients underwent arthroscopic anterior cruciate ligament reconstruction with hamstring tendons using femoral Rigid fix cross-pin and interference screw tibial fixation. The evaluation methods were clinical examination, IKDC scores, Lysholm and pre injury and post reconstruction Tegner score. Patients were followed up from minimum of 6 months to 4 year seven months. Results: C In our study of sample size 50 we found that mean age of patients was 30.8 Years with male preponderance. Mean post operative IKDC and Lysholm score has been 75.6 and 84.4 respectively.Mean Tegner pre-injury score and post reconstruction score has been 5.4 and 4.26 .Box plot comparison of pre injury and post operativeTegner score reveals a statistically significant difference with respect to paired t test P Conclusions: Arthroscopic anterior cruciate ligament reconstruction with femoral rigid fix cross pins and tibial interference screws results in comparable short term to midterm functional results compared to other types of fixation
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DEFF Research Database (Denmark)
Koeniger, Paul; Barta, Gabriella; Thiel, Christine
2014-01-01
reveal pedogenetic information during the different climatic phases. Carbon and oxygen isotope analyses are valuable to classify secondary carbonates and to serve as proxies for the interpretation of paleoenvironmental conditions, e.g. moisture conditions, leaching, the role of organic matter...
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Mather, Caroline C.; Skrzypek, Grzegorz; Dogramaci, Shawan; Grierson, Pauline F.
2018-04-01
Groundwater dolocrete occurring within the Fortescue Marsh, a large inland wetland in the Pilbara region of northwest Australia, has been investigated to provide paleoenvironmental and paleohydrological records and further the understanding of low temperature dolomite formation in terrestrial settings over the Quaternary Period. Two major phases of groundwater dolocrete formation are apparent from the presence of two distinct units of dolocrete, based on differences in depth, δ18O values and mineral composition. Group 1 (G1) occurs at depth 20-65 m b.g.l. (below ground level) and contains stoichiometric dolomite with δ18O values of -4.02-0.71‰. Group 2 (G2) is shallower (0-23 m b.g.l.), occurring close to the current groundwater level, and contains Ca-rich dolomite ± secondary calcite with a comparatively lower range of δ18O values (-7.74 and -6.03‰). Modelled δ18O values of paleogroundwater from which older G1 dolomite precipitated indicated highly saline source water, which had similar stable oxygen isotope compositions to relatively old brine groundwater within the Marsh, developed under a different hydroclimatic regime. The higher δ18O values suggest highly evaporitic conditions occurred at the Marsh, which may have been a playa lake to saline mud flat environment. In contrast, G2 dolomite precipitated from comparatively fresher water, and modelled δ18O values suggested formation from mixing between inflowing fresher groundwater with saline-brine groundwater within the Marsh. The δ18O values of the calcite indicates formation from brackish to saline groundwater, which suggests this process may be associated with coeval gypsum dissolution. In contrast to the modern hydrology of the Marsh, which is surface water dependent and driven by a flood and drought regime, past conditions conducive to dolomite precipitation suggest a groundwater dependent system, where shallow groundwaters were influenced by intensive evaporation.
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Hybrid spectral CT reconstruction.
Directory of Open Access Journals (Sweden)
Darin P Clark
Full Text Available Current photon counting x-ray detector (PCD technology faces limitations associated with spectral fidelity and photon starvation. One strategy for addressing these limitations is to supplement PCD data with high-resolution, low-noise data acquired with an energy-integrating detector (EID. In this work, we propose an iterative, hybrid reconstruction technique which combines the spectral properties of PCD data with the resolution and signal-to-noise characteristics of EID data. Our hybrid reconstruction technique is based on an algebraic model of data fidelity which substitutes the EID data into the data fidelity term associated with the PCD reconstruction, resulting in a joint reconstruction problem. Within the split Bregman framework, these data fidelity constraints are minimized subject to additional constraints on spectral rank and on joint intensity-gradient sparsity measured between the reconstructions of the EID and PCD data. Following a derivation of the proposed technique, we apply it to the reconstruction of a digital phantom which contains realistic concentrations of iodine, barium, and calcium encountered in small-animal micro-CT. The results of this experiment suggest reliable separation and detection of iodine at concentrations ≥ 5 mg/ml and barium at concentrations ≥ 10 mg/ml in 2-mm features for EID and PCD data reconstructed with inherent spatial resolutions of 176 μm and 254 μm, respectively (point spread function, FWHM. Furthermore, hybrid reconstruction is demonstrated to enhance spatial resolution within material decomposition results and to improve low-contrast detectability by as much as 2.6 times relative to reconstruction with PCD data only. The parameters of the simulation experiment are based on an in vivo micro-CT experiment conducted in a mouse model of soft-tissue sarcoma. Material decomposition results produced from this in vivo data demonstrate the feasibility of distinguishing two K-edge contrast agents with
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Hybrid spectral CT reconstruction
Clark, Darin P.
2017-01-01
Current photon counting x-ray detector (PCD) technology faces limitations associated with spectral fidelity and photon starvation. One strategy for addressing these limitations is to supplement PCD data with high-resolution, low-noise data acquired with an energy-integrating detector (EID). In this work, we propose an iterative, hybrid reconstruction technique which combines the spectral properties of PCD data with the resolution and signal-to-noise characteristics of EID data. Our hybrid reconstruction technique is based on an algebraic model of data fidelity which substitutes the EID data into the data fidelity term associated with the PCD reconstruction, resulting in a joint reconstruction problem. Within the split Bregman framework, these data fidelity constraints are minimized subject to additional constraints on spectral rank and on joint intensity-gradient sparsity measured between the reconstructions of the EID and PCD data. Following a derivation of the proposed technique, we apply it to the reconstruction of a digital phantom which contains realistic concentrations of iodine, barium, and calcium encountered in small-animal micro-CT. The results of this experiment suggest reliable separation and detection of iodine at concentrations ≥ 5 mg/ml and barium at concentrations ≥ 10 mg/ml in 2-mm features for EID and PCD data reconstructed with inherent spatial resolutions of 176 μm and 254 μm, respectively (point spread function, FWHM). Furthermore, hybrid reconstruction is demonstrated to enhance spatial resolution within material decomposition results and to improve low-contrast detectability by as much as 2.6 times relative to reconstruction with PCD data only. The parameters of the simulation experiment are based on an in vivo micro-CT experiment conducted in a mouse model of soft-tissue sarcoma. Material decomposition results produced from this in vivo data demonstrate the feasibility of distinguishing two K-edge contrast agents with a spectral
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Nieto-Moreno, V.; Martínez-Ruiz, F.; Jiménez-Espejo, F. J.; Gallego-Torres, D.; Rodrigo-Gámiz, M.; Sakamoto, T.; Böttcher, M.; García-Orellana, J.; Ortega-Huertas, M.
2009-04-01
The westernmost Mediterranean (Alboran Sea basin) is a key location for paleoceanographic and paleoclimatic reconstructions since high sedimentation rates provide ultra high-resolution records at centennial and millennial scales. Here, we present a paleoenvironmental reconstruction for the last 4000 yr, which is based on a multi-proxy approach that includes major and trace element-content fluctuations and mineral composition of marine sediments. The investigated materials correspond to several gravity and box cores recovered in the Alboran Sea basin during different oceanographic cruises (TTR-14 and TTR-17), which have been sampled at very high resolution. Comparative analysis of these cores allows establishing climate oscillations at centennial to millennial scales. Although relatively more attention have been devoted to major climate changes during the last glacial cycle, such as the Last Glacial Maximun, deglaciation and abrupt cooling events (Heinrich and Younger Dryas), the late Holocene has also been punctuated by significant rapid climate variability including polar cooling, aridity and changes in the intensity of the atmospheric circulation. These climate oscillations coincide with significant fluctuations in chemical and mineral composition of marine sediments. Thus, bulk and clay mineralogy, REE composition and Rb/Al, Zr/Al, La/Lu ratios provide information on the sedimentary regime (eolian-fluvial input and source areas), Ba-based proxies on fluctuations in marine productivity and redox sensitive elements on oxygen conditions at time of deposition. A decrease in fluvial-derived elements/minerals (e.g., Rb, detrital mica) takes places during the so-called Late Bronze Age-Iron Age, Dark Age, and Little Ice Age Period. Meanwhile an increase is evidenced during the Medieval Warm Period and the Roman Humid Period. This last trend runs parallel to a decline of element/minerals of typical eolian source (Zr, kaolinite) with the exception of the Roman Humid
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MO-DE-207A-12: Toward Patient-Specific 4DCT Reconstruction Using Adaptive Velocity Binning
International Nuclear Information System (INIS)
Morris, E.D.; Glide-Hurst, C.; Klahr, P.
2016-01-01
Purpose: While 4DCT provides organ/tumor motion information, it often samples data over 10–20 breathing cycles. For patients presenting with compromised pulmonary function, breathing patterns can change over the acquisition time, potentially leading to tumor delineation discrepancies. This work introduces a novel adaptive velocity-modulated binning (AVB) 4DCT algorithm that modulates the reconstruction based on the respiratory waveform, yielding a patient-specific 4DCT solution. Methods: AVB was implemented in a research reconstruction configuration. After filtering the respiratory waveform, the algorithm examines neighboring data to a phase reconstruction point and the temporal gate is widened until the difference between the reconstruction point and waveform exceeds a threshold value—defined as percent difference between maximum/minimum waveform amplitude. The algorithm only impacts reconstruction if the gate width exceeds a set minimum temporal width required for accurate reconstruction. A sensitivity experiment of threshold values (0.5, 1, 5, 10, and 12%) was conducted to examine the interplay between threshold, signal to noise ratio (SNR), and image sharpness for phantom and several patient 4DCT cases using ten-phase reconstructions. Individual phase reconstructions were examined. Subtraction images and regions of interest were compared to quantify changes in SNR. Results: AVB increased signal in reconstructed 4DCT slices for respiratory waveforms that met the prescribed criteria. For the end-exhale phases, where the respiratory velocity is low, patient data revealed a threshold of 0.5% demonstrated increased SNR in the AVB reconstructions. For intermediate breathing phases, threshold values were required to be >10% to notice appreciable changes in CT intensity with AVB. AVB reconstructions exhibited appreciably higher SNR and reduced noise in regions of interest that were photon deprived such as the liver. Conclusion: We demonstrated that patient
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MO-DE-207A-12: Toward Patient-Specific 4DCT Reconstruction Using Adaptive Velocity Binning
Energy Technology Data Exchange (ETDEWEB)
Morris, E.D.; Glide-Hurst, C. [Henry Ford Health System, Detroit, MI (United States); Wayne State University, Detroit, MI (United States); Klahr, P. [Philips Healthcare, Cleveland, Ohio (United States)
2016-06-15
Purpose: While 4DCT provides organ/tumor motion information, it often samples data over 10–20 breathing cycles. For patients presenting with compromised pulmonary function, breathing patterns can change over the acquisition time, potentially leading to tumor delineation discrepancies. This work introduces a novel adaptive velocity-modulated binning (AVB) 4DCT algorithm that modulates the reconstruction based on the respiratory waveform, yielding a patient-specific 4DCT solution. Methods: AVB was implemented in a research reconstruction configuration. After filtering the respiratory waveform, the algorithm examines neighboring data to a phase reconstruction point and the temporal gate is widened until the difference between the reconstruction point and waveform exceeds a threshold value—defined as percent difference between maximum/minimum waveform amplitude. The algorithm only impacts reconstruction if the gate width exceeds a set minimum temporal width required for accurate reconstruction. A sensitivity experiment of threshold values (0.5, 1, 5, 10, and 12%) was conducted to examine the interplay between threshold, signal to noise ratio (SNR), and image sharpness for phantom and several patient 4DCT cases using ten-phase reconstructions. Individual phase reconstructions were examined. Subtraction images and regions of interest were compared to quantify changes in SNR. Results: AVB increased signal in reconstructed 4DCT slices for respiratory waveforms that met the prescribed criteria. For the end-exhale phases, where the respiratory velocity is low, patient data revealed a threshold of 0.5% demonstrated increased SNR in the AVB reconstructions. For intermediate breathing phases, threshold values were required to be >10% to notice appreciable changes in CT intensity with AVB. AVB reconstructions exhibited appreciably higher SNR and reduced noise in regions of interest that were photon deprived such as the liver. Conclusion: We demonstrated that patient
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International Nuclear Information System (INIS)
Choo, Ji Yung; Goo, Jin Mo; Park, Chang Min; Park, Sang Joon; Lee, Chang Hyun; Shim, Mi-Suk
2014-01-01
To evaluate filtered back projection (FBP) and two iterative reconstruction (IR) algorithms and their effects on the quantitative analysis of lung parenchyma and airway measurements on computed tomography (CT) images. Low-dose chest CT obtained in 281 adult patients were reconstructed using three algorithms: FBP, adaptive statistical IR (ASIR) and model-based IR (MBIR). Measurements of each dataset were compared: total lung volume, emphysema index (EI), airway measurements of the lumen and wall area as well as average wall thickness. Accuracy of airway measurements of each algorithm was also evaluated using an airway phantom. EI using a threshold of -950 HU was significantly different among the three algorithms in decreasing order of FBP (2.30 %), ASIR (1.49 %) and MBIR (1.20 %) (P < 0.01). Wall thickness was also significantly different among the three algorithms with FBP (2.09 mm) demonstrating thicker walls than ASIR (2.00 mm) and MBIR (1.88 mm) (P < 0.01). Airway phantom analysis revealed that MBIR showed the most accurate value for airway measurements. The three algorithms presented different EIs and wall thicknesses, decreasing in the order of FBP, ASIR and MBIR. Thus, care should be taken in selecting the appropriate IR algorithm on quantitative analysis of the lung. (orig.)
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Energy Technology Data Exchange (ETDEWEB)
Choo, Ji Yung [Seoul National University Medical Research Center, Department of Radiology, Seoul National University College of Medicine, and Institute of Radiation Medicine, Seoul (Korea, Republic of); Korea University Ansan Hospital, Ansan-si, Department of Radiology, Gyeonggi-do (Korea, Republic of); Goo, Jin Mo; Park, Chang Min; Park, Sang Joon [Seoul National University Medical Research Center, Department of Radiology, Seoul National University College of Medicine, and Institute of Radiation Medicine, Seoul (Korea, Republic of); Seoul National University, Cancer Research Institute, Seoul (Korea, Republic of); Lee, Chang Hyun; Shim, Mi-Suk [Seoul National University Medical Research Center, Department of Radiology, Seoul National University College of Medicine, and Institute of Radiation Medicine, Seoul (Korea, Republic of)
2014-04-15
To evaluate filtered back projection (FBP) and two iterative reconstruction (IR) algorithms and their effects on the quantitative analysis of lung parenchyma and airway measurements on computed tomography (CT) images. Low-dose chest CT obtained in 281 adult patients were reconstructed using three algorithms: FBP, adaptive statistical IR (ASIR) and model-based IR (MBIR). Measurements of each dataset were compared: total lung volume, emphysema index (EI), airway measurements of the lumen and wall area as well as average wall thickness. Accuracy of airway measurements of each algorithm was also evaluated using an airway phantom. EI using a threshold of -950 HU was significantly different among the three algorithms in decreasing order of FBP (2.30 %), ASIR (1.49 %) and MBIR (1.20 %) (P < 0.01). Wall thickness was also significantly different among the three algorithms with FBP (2.09 mm) demonstrating thicker walls than ASIR (2.00 mm) and MBIR (1.88 mm) (P < 0.01). Airway phantom analysis revealed that MBIR showed the most accurate value for airway measurements. The three algorithms presented different EIs and wall thicknesses, decreasing in the order of FBP, ASIR and MBIR. Thus, care should be taken in selecting the appropriate IR algorithm on quantitative analysis of the lung. (orig.)
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Tomographic reconstruction by using FPSIRT (Fast Particle System Iterative Reconstruction Technique)
Energy Technology Data Exchange (ETDEWEB)
Moreira, Icaro Valgueiro M.; Melo, Silvio de Barros; Dantas, Carlos; Lima, Emerson Alexandre; Silva, Ricardo Martins; Cardoso, Halisson Alberdan C., E-mail: ivmm@cin.ufpe.br, E-mail: sbm@cin.ufpe.br, E-mail: rmas@cin.ufpe.br, E-mail: hacc@cin.ufpe.br, E-mail: ccd@ufpe.br, E-mail: eal@cin.ufpe.br [Universidade Federal de Pernambuco (UFPE), Recife, PE (Brazil)
2015-07-01
The PSIRT (Particle System Iterative Reconstruction Technique) is a method of tomographic image reconstruction primarily designed to work with configurations suitable for industrial applications. A particle system is an optimization technique inspired in real physical systems that associates to the reconstructing material a set of particles with certain physical features, subject to a force eld, which can produce movement. The system constantly updates the set of particles by repositioning them in such a way as to approach the equilibrium. The elastic potential along a trajectory is a function of the difference between the attenuation coefficient in the current configuration and the corresponding input data. PSIRT has been successfully used to reconstruct simulated and real objects subject to sets of parallel and fanbeam lines in different angles, representing typical gamma-ray tomographic arrangements. One of PSIRT's limitation was its performance, too slow for real time scenarios. In this work, it is presented a reformulation in PSIRT's computational model, which is able to grant the new algorithm, the FPSIRT - Fast System Iterative Reconstruction Technique, a performance up to 200-time faster than PSIRT's. In this work a comparison of their application to real and simulated data from the HSGT, High Speed Gamma Tomograph, is presented. (author)
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Tomographic reconstruction by using FPSIRT (Fast Particle System Iterative Reconstruction Technique)
International Nuclear Information System (INIS)
Moreira, Icaro Valgueiro M.; Melo, Silvio de Barros; Dantas, Carlos; Lima, Emerson Alexandre; Silva, Ricardo Martins; Cardoso, Halisson Alberdan C.
2015-01-01
The PSIRT (Particle System Iterative Reconstruction Technique) is a method of tomographic image reconstruction primarily designed to work with configurations suitable for industrial applications. A particle system is an optimization technique inspired in real physical systems that associates to the reconstructing material a set of particles with certain physical features, subject to a force eld, which can produce movement. The system constantly updates the set of particles by repositioning them in such a way as to approach the equilibrium. The elastic potential along a trajectory is a function of the difference between the attenuation coefficient in the current configuration and the corresponding input data. PSIRT has been successfully used to reconstruct simulated and real objects subject to sets of parallel and fanbeam lines in different angles, representing typical gamma-ray tomographic arrangements. One of PSIRT's limitation was its performance, too slow for real time scenarios. In this work, it is presented a reformulation in PSIRT's computational model, which is able to grant the new algorithm, the FPSIRT - Fast System Iterative Reconstruction Technique, a performance up to 200-time faster than PSIRT's. In this work a comparison of their application to real and simulated data from the HSGT, High Speed Gamma Tomograph, is presented. (author)
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The evolving breast reconstruction
DEFF Research Database (Denmark)
Thomsen, Jørn Bo; Gunnarsson, Gudjon Leifur
2014-01-01
The aim of this editorial is to give an update on the use of the propeller thoracodorsal artery perforator flap (TAP/TDAP-flap) within the field of breast reconstruction. The TAP-flap can be dissected by a combined use of a monopolar cautery and a scalpel. Microsurgical instruments are generally...... not needed. The propeller TAP-flap can be designed in different ways, three of these have been published: (I) an oblique upwards design; (II) a horizontal design; (III) an oblique downward design. The latissimus dorsi-flap is a good and reliable option for breast reconstruction, but has been criticized...... for oncoplastic and reconstructive breast surgery and will certainly become an invaluable addition to breast reconstructive methods....
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International Nuclear Information System (INIS)
Ibarra, Alejandro
2007-01-01
In this talk we discuss the prospects to reconstruct the high-energy see-saw Lagrangian from low energy experiments in supersymmetric scenarios. We show that the model with three right-handed neutrinos could be reconstructed in theory, but not in practice. Then, we discuss the prospects to reconstruct the model with two right-handed neutrinos, which is the minimal see-saw model able to accommodate neutrino observations. We identify the relevant processes to achieve this goal, and comment on the sensitivity of future experiments to them. We find the prospects much more promising and we emphasize in particular the importance of the observation of rare leptonic decays for the reconstruction of the right-handed neutrino masses
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Botulinum toxin in preparation of oral cavity for microsurgical reconstruction.
Corradino, Bartolo; Di Lorenzo, Sara; Mossuto, Carmela; Costa, Renato Patrizio; Moschella, Francesco
2010-01-01
Infiltration of botulinum toxin in the major salivary glands allows a temporary reduction of salivation that begins 8 days afterwards and returns to normal within 2 months. The inhibition of salivary secretion, carried out before the oral cavity reconstructive surgery, could allow a reduction of the incidence of oro-cutaneous fistulas and local complications. Saliva stagnation is a risk factor for patients who have to undergo reconstructive microsurgery of the oral cavity, because of fistula formation and local complications in the oral cavity. The authors suggest infiltration of botulinum toxin in the major salivary glands to reduce salivation temporarily during the healing stage. During the preoperative stage, 20 patients with oral cavity carcinoma who were candidates for microsurgical reconstruction underwent sialoscintigraphy and a quantitative measurement of the salivary secretion. Injection of botulinum toxin was carried out in the salivary glands 4 days before surgery. The saliva quantitative measurement was repeated 3 and 8 days after infiltration, sialoscintigraphy after 15 days. In all cases, the saliva quantitative measurement revealed a reduction of 50% and 70% of the salivary secretion after 72 h and 8 days, respectively. A lower rate of local complications was observed.
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Szynkiewicz, A.; Ewing, R. C.; Fishbaugh, K. E.; Bourke, M. C.; Bustos, D.; Pratt, L. M.
2009-03-01
New morphological features (e.g., cross-bedding strata, bright patches), revealed by HiRISE for the gypsum-rich Olympia Undae Dune Field, appear to indicate the change(s) in paleoenvironmental conditions likely controlled by climate fluctuations in the North Pole of Mars.
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Directory of Open Access Journals (Sweden)
Yoshiyuki Kubota
2009-05-01
Full Text Available Quantitative analysis of anatomical synaptic connectivity in microcircuits depends upon accurate 3-dimentional reconstructions of synaptic ultrastructure using electron microscopy of serial ultrathin sections. Here we address two pitfalls in current methodology that lead to inaccurate reconstructions and compromise conclusions drawn from the data. The first pitfall is inaccurate determination of ultrathin section thickness, which negatively affects the three-dimensional shape of reconstructions and therefore impairs quantitative measurement of synaptic structures. Secondly, current methodology significantly underestimates the number of synaptic junctions, with only two-thirds or less of genuine synaptic contacts being identified in dendrites that radiate within the plane of section. Here we propose a new methodology utilizing precise optical measurements of section thickness and successive observations of synaptic elements across serial ultrathin sections that corrects for these limitations to allow accurate 3-dimentional reconstruction of synaptic ultrastructure. We use this methodology to reveal that parvalbumin-expressing cortical interneurons have a much higher synaptic density than previously shown. This result suggests that this technique will be useful for re-examining synaptic connectivity of other cell types.
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Observation of Pt-{100}-p(2×2-O reconstruction by an environmental TEM
Directory of Open Access Journals (Sweden)
Hengbo Li
2016-06-01
Full Text Available The surface structure of noble metal nanoparticles usually plays a crucial role during the catalytic process in the fields of energy and environment. It has been studied extensively by surface analytic methods, such as scanning tunneling microscopy. However, it is still challenging to secure a direct observation of the structural evolution of surfaces of nanocatalysts in reaction (gas and heating conditions at the atomic scale. Here we report an in-situ observation of atomic reconstruction on Pt {100} surfaces exposed to oxygen in an environmental transmission electron microscope (TEM. Our high-resolution TEM images revealed that Pt-{100}-p(2×2-O reconstruction occurs during the reaction between oxygen atoms and {100} facets. A reconstruction model was proposed, and TEM images simulated according to this model with different defocus values match the experimental results well.
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Energy Technology Data Exchange (ETDEWEB)
Piedad-Sanchez, Noe; Martinez, Luis; Izart, Alain; Elie, Marcel [UMR G2R/7566, Geologie et Gestion des Ressources Minerales et Energetiques, Faculte des Sciences, Universite Henri Poincare, Nancy 1, BP-239, Boulevard des Aiguillettes, Vandoeuvre-les-Nancy Cedex 54506 (France); Suarez-Ruiz, Isabel [Instituto Nacional del Carbon (CSIC), C/ Francisco Pintado Fe, 26, Ap. Co., 73, Oviedo 33011 (Spain); Keravis, Didier [Institut des Sciences de la Terre (ISTO), CNRS-Universite d' Orleans, Batiment Geosciences, BP 6759, Orleans 45067 (France)
2004-03-23
This paper presents for the first time a petrological and geochemical study of coals from the Central Asturian Coal Basin (North Spain) of Carboniferous (Pennsylvanian), mainly of Moscovian, age. A paleoenvironmental approach was used, taking into account both petrographic and organic geochemical studies. Vitrinite reflectance (R{sub r}) ranges from 0.5% to 2.5%, which indicates a high volatile bituminous to semianthracite and anthracite coal rank. The coal samples selected for paleoenvironmental reconstruction are located inside the oil-gas-prone phase, corresponding to the interval between the onset of oil generation and first gas generation and efficient expulsion of oil. This phase is represented by coals that have retained their hydrocarbon potential and also preserved biomarker information. Paleodepositional reconstruction based on maceral and petrographic indices points to a swamp environment with vitrinite-rich coal facies and variable mineral matter content. The gelification index (GI) and groundwater influence index (GWI) indicate strong gelification and wet conditions. The biomarkers exhibit a high pristane/phytane ratio, suggesting an increase in this ratio from diagenetic processes, and a high diterpanes ratio. This, in turn, would seem to indicate a high swamp water table and a humid climate. The maximum point of coal accumulation occurred during the regressive part of the Late Moscovian sequence and in the most humid climate described for this period of time in the well-known coal basins of Europe and North America.
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2011-01-01
Objectives Reconstruction of large mandiblular defects following ablative oncologic surgery could be done by using vascularized bone transfer or, more often, primarily with simultaneous or delayed bone grafting, using load bearing reconstruction plates. Bending of these reconstruction plates is typically directed along the outer contour of the original mandible. Simultaneously or in a second operation vascularized or non-vascularized bone is fixed to the reconstruction plate. However, the prosthodontic-driven backward planning to ease bony reconstruction of the mandible in terms of dental rehabilitation using implant-retained overdentures might be an eligible solution. The purpose of this work was to develop, establish and clinically evaluate a novel 3D planning procedure for mandibular reconstruction. Materials and methods Three patients with tumors involving the mandible, which included squamous cell carcinoma in the floor of the mouth and keratocystic odontogenic tumor, were treated surgically by hemimandibulectomy. Results In primary alloplastic mandible reconstruction, shape and size of the reconstruction plate could be predefined and prebent prior to surgery. Clinical relevance This study provides modern treatment strategies for mandibular reconstruction. PMID:21968330
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International Nuclear Information System (INIS)
Zhang Guangjun; Xiong Jun; Gao Hongming; Wu Lin
2011-01-01
A preliminary investigation of tomographic reconstruction of an asymmetric arc plasma has been carried out. The objective of this work aims at reconstructing emission coefficients of a non-axisymmetric coupling arc from measured intensities by means of an algebraic reconstruction technique (ART). In order to define the optimal experimental scheme for good quality with limited views, the dependence of the reconstruction quality on three configurations (four, eight, ten projection angles) are presented and discussed via a displaced Gaussian model. Then, the emission coefficients of a free burning arc are reconstructed by the ART with the ten-view configuration and an Abel inversion, respectively, and good agreement is obtained. Finally, the emission coefficient profiles of the coupling arc are successfully achieved with the ten-view configuration. The results show that the distribution of emission coefficient for the coupling arc is different from centrosymmetric shape. The ART is perfectly suitable for reconstructing emission coefficients of the coupling arc with the ten-view configuration, proving the feasibility and utility of the ART to characterize an asymmetric arc.
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Optimization of the Reconstruction Interval in Neurovascular 4D-CTA Imaging
Hoogenboom, T.C.H.; van Beurden, R.M.J.; van Teylingen, B.; Schenk, B.; Willems, P.W.A.
2012-01-01
Summary Time resolved whole brain CT angiography (4D-CTA) is a novel imaging technology providing information regarding blood flow. One of the factors that influence the diagnostic value of this examination is the temporal resolution, which is affected by the gantry rotation speed during acquisition and the reconstruction interval during post-processing. Post-processing determines the time spacing between two reconstructed volumes and, unlike rotation speed, does not affect radiation burden. The data sets of six patients who underwent a cranial 4D-CTA were used for this study. Raw data was acquired using a 320-slice scanner with a rotation speed of 2 Hz. The arterial to venous passage of an intravenous contrast bolus was captured during a 15 s continuous scan. The raw data was reconstructed using four different reconstruction-intervals: 0.2, 0.3, 0.5 and 1.0 s. The results were rated by two observers using a standardized score sheet. The appearance of each lesion was rated correctly in all readings. Scoring for quality of temporal resolution revealed a stepwise improvement from the 1.0 s interval to the 0.3 s interval, while no discernable improvement was noted between the 0.3 s and 0.2 s interval. An increase in temporal resolution may improve the diagnostic quality of cranial 4D-CTA. Using a rotation speed of 0.5 s, the optimal reconstruction interval appears to be 0.3 s, beyond which, changes can no longer be discerned. PMID:23217631
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Pulmonary sequestration: diagnosis with three dimensional reconstruction using spiral CT
International Nuclear Information System (INIS)
Nie Yongkang; Zhao Shaohong; Cai Zulong; Yang Li; Zhao Hong; Zhang Ailian; Huang Hui
2003-01-01
Objective: To evaluate the role of three dimensional (3D) reconstruction using spiral CT in the diagnosis of pulmonary sequestration. Methods: Ten patients with pulmonary sequestration were analyzed. The diagnoses were confirmed by angiography in 2 patients, by operation in 2 patients, and by CT angiography in 6 patients. All patients were examined with Philips SR 7000 or GE Lightspeed Plus scanner. CT images were transferred to a workstation and 3D reconstruction was performed. All images were reviewed and analyzed by two radiologists. Results: Among 10 patients, the pulmonary sequestration was in the right lower lobe in 1 patient and in the left lower lobe in 9 patients. Anomalous systemic arteries originated from thoracic aorta in 8 patients and from celiac artery in 2 patients. On plain CT scan, there were 4 patients with patchy opacities, 3 patients with hilar mass accompanying vascular engorgement and profusion in adjacent parenchyma, 2 patients with finger-like appendage surrounded by hyper-inflated lung, and 1 patient with lung mass-like lesion. Enhanced CT revealed anomalous systemic arteries in 9 patients and drainage vein in 7 patients. Maximum intensity projection (MIP) and curvilinear reconstruction could depict the abnormal systemic artery and drainage vein in sequestration. Surface shadow display (SSD) and volume rendering (VR) could delineate the anomalous systemic artery. Conclusion: 3D reconstruction with enhanced spiral CT can depict anomalous systemic artery and drainage vein and it is the first method of choice in diagnosing pulmonary sequestration
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The Impact of Facial Aesthetic and Reconstructive Surgeries on Patients' Quality of Life.
Yıldız, Tülin; Selimen, Deniz
2015-12-01
The aim of the present prospective and descriptive study was to assess the impact of facial aesthetic and reconstructive surgeries on quality of life. Ninety-one patients, of whom 43 had aesthetic surgery and 48 had reconstructive surgery, were analysed. The data were collected using the patient information form, body cathexis scale, and short form (SF)-36 quality of life scale. There were significant differences between before and after the surgery in both groups in terms of body cathexis scale and quality of life (p aesthetic and reconstructive surgery patients before the surgery. However, the problems were decreased, and the quality of life was enhanced after the surgery. Among the parameters of SF-36 quality of life scale, particularly the mean scores of social functioning, physical role functioning, emotional role functioning, mental health, and vitality/fatigue were found low before the surgery, whereas the mean scores were significantly improved after the surgery. The results revealed that facial aesthetic and reconstructive surgical interventions favourably affected the body image perception and self-esteem and that positive reflections in emotional, social, and mental aspects were effective in enhancing self-confidence and quality of life of the individual.
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Technical basis for dose reconstruction
International Nuclear Information System (INIS)
Anspaugh, L.R.
1996-01-01
The purpose of this paper is to consider two general topics: Technical considerations of why dose-reconstruction studies should or should not be performed and methods of dose reconstruction. The first topic is of general and growing interest as the number of dose-reconstruction studies increases, and one asks the question whether it is necessary to perform a dose reconstruction for virtually every site at which, for example, the Department of Energy (DOE) has operated a nuclear-related facility. And there is the broader question of how one might logically draw the line at performing or not performing dose-reconstruction (radiological and chemical) studies for virtually every industrial complex in the entire country. The second question is also of general interest. There is no single correct way to perform a dose-reconstruction study, and it is important not to follow blindly a single method to the point that cheaper, faster, more accurate, and more transparent methods might not be developed and applied. 90 refs., 4 tabs
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Technical basis for dose reconstruction
International Nuclear Information System (INIS)
Anspaugh, L.R.
1996-01-01
The purpose of this paper is to consider two general topics: technical considerations of why dose-reconstruction studies should or should not be performed and methods of dose reconstruction. The first topic is of general and growing interest as the number of dose-reconstruction studies increases, and one asks the question whether it is necessary to perform a dose reconstruction for virtually every site at which, for example, the Department of Energy (DOE) has operated a nuclear-related facility. And there is the broader question of how one might logically draw the line at performing or not performing dose-reconstruction (radiological and chemical) studies for virtually every industrial complex in the entire country. The second question is also of general interest. There is no single correct way to perform a dose-reconstruction study, and it is important not to follow blindly a single method to the point that cheaper, faster, more accurate, and more transparent methods might not be developed and applied
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Three-dimensional ICT reconstruction
International Nuclear Information System (INIS)
Zhang Aidong; Li Ju; Chen Fa; Sun Lingxia
2005-01-01
The three-dimensional ICT reconstruction method is the hot topic of recent ICT technology research. In the context, qualified visual three-dimensional ICT pictures are achieved through multi-piece two-dimensional images accumulation by, combining with thresholding method and linear interpolation. Different direction and different position images of the reconstructed pictures are got by rotation and interception respectively. The convenient and quick method is significantly instructive to more complicated three-dimensional reconstruction of ICT images. (authors)
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Three-dimensional ICT reconstruction
International Nuclear Information System (INIS)
Zhang Aidong; Li Ju; Chen Fa; Sun Lingxia
2004-01-01
The three-dimensional ICT reconstruction method is the hot topic of recent ICT technology research. In the context qualified visual three-dimensional ICT pictures are achieved through multi-piece two-dimensional images accumulation by order, combining with thresholding method and linear interpolation. Different direction and different position images of the reconstructed pictures are got by rotation and interception respectively. The convenient and quick method is significantly instructive to more complicated three-dimensional reconstruction of ICT images. (authors)
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Clinical application of 3D reconstruction of tracheobronchial tree with electron beam CT
International Nuclear Information System (INIS)
Yao Zhenwei; Shen Tianzhen
2002-01-01
Objective: To explore the clinical promise of CT 3D reconstruction of tracheobronchial tree (TBT) by analyzing 73 cases retrospectively. Methods: All the 73 cases were collected from October 1997 to February 2000, who were scanned by EBCT with 130 kV and 630 mA. The scanning method was continuous volume scan, the slice thickness were 3 mm or 1.5 mm. All cross-sectional images were transmitted to the INSIGHT workstation and reconstructed with SSD (shaded surface display), and the threshold setting were -500 to -300 HU. Results: 3D reconstruction of TBT with EBCT could reveal the abnormal changes of TBT by many kinds of diseases including central cancer, inflammation, bronchiectasis, saber-sheath trachea, trachea cancer, congenital disorders, post-surgical changes of lung cancer, and stenoses by adjacent benign or malignant diseases. It could be used to locate the stenoses and measure stenotic extent. Of the 35 central cancer cases with 3D reconstruction, 6 cases were pestle obstructed, 15 cases cone obstructed, 5 cases interrupted irregularly, 8 cases with eccentric stenoses, and 1 case with right stem destroyed and right upper lobe bronchus obstructed. Conclusion: 3D reconstruction of TBT has characteristic sign in the diagnosis or differential diagnosis of central airway's benign or malignant stenoses, and it is of instructional value in clinical use
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An Isolated Medial Patellofemoral Ligament Reconstruction with Patellar Tendon Autograft
Directory of Open Access Journals (Sweden)
Dariusz Witoński
2013-01-01
Full Text Available The aim of the study was to evaluate the results of the medial patellofemoral ligament reconstruction with a medial strip of patellar tendon autograft after a minimum 2-year followup. Ten patients (10 knees were operated on by one surgeon, according to the modified technique, described by Camanho, without any bone plug at free graft end. The mean age of the patients was 27.2 years (ranging from 18 to 42 years. The mean follow-up period was 3 years and 7 months. All patients were reviewed prospectively. At the last follow-up visit, all the patients demonstrated a significant improvement in terms of patellofemoral joint stability, all aspects of the KOOS questionnaire, and Kujala et al.’s score (59.7 points preoperatively and 84.4 points at the last followup. No patient revealed recurrent dislocation. The SF-36 score revealed a significant improvement in bodily pain, general health, physical role functioning, social role functioning, and physical functioning domains. The described MPFL reconstruction with the use of the medial 1/3rd of patella tendon is an effective procedure that gives satisfactorily patellofemoral joint functions, improves the quality of life, and provides much pain relief. It is relatively simple, surgically not extensive, and economically cost-effective procedure.
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Ancestral state reconstruction, rate heterogeneity, and the evolution of reptile viviparity.
King, Benedict; Lee, Michael S Y
2015-05-01
Virtually all models for reconstructing ancestral states for discrete characters make the crucial assumption that the trait of interest evolves at a uniform rate across the entire tree. However, this assumption is unlikely to hold in many situations, particularly as ancestral state reconstructions are being performed on increasingly large phylogenies. Here, we show how failure to account for such variable evolutionary rates can cause highly anomalous (and likely incorrect) results, while three methods that accommodate rate variability yield the opposite, more plausible, and more robust reconstructions. The random local clock method, implemented in BEAST, estimates the position and magnitude of rate changes on the tree; split BiSSE estimates separate rate parameters for pre-specified clades; and the hidden rates model partitions each character state into a number of rate categories. Simulations show the inadequacy of traditional models when characters evolve with both asymmetry (different rates of change between states within a character) and heterotachy (different rates of character evolution across different clades). The importance of accounting for rate heterogeneity in ancestral state reconstruction is highlighted empirically with a new analysis of the evolution of viviparity in squamate reptiles, which reveal a predominance of forward (oviparous-viviparous) transitions and very few reversals. © The Author(s) 2015. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: journals.permissions@oup.com.
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Predictors of satisfaction and quality of life following post-mastectomy breast reconstruction.
Matthews, Hannah; Carroll, Natalie; Renshaw, Derek; Turner, Andrew; Park, Alan; Skillman, Jo; McCarthy, Kate; Grunfeld, Elizabeth A
2017-11-01
Breast reconstruction is associated with multiple psychological benefits. However, few studies have identified clinical and psychological factors associated with improved satisfaction and quality of life. This study examined factors, which predict satisfaction with breast appearance, outcome satisfaction and quality of life following post-mastectomy breast reconstruction. Women who underwent post-mastectomy breast reconstruction between 2010 and 2016 received a postal questionnaire consisting of The BREAST-Q Patient Reported Outcomes Instrument, The European Organisation for Research and Treatment of Cancer QLQ-30 Questionnaire, The Patient and Observer Scar Assessment Scale, and a series of Visual-Analogue Scales. One hundredforty-eight women completed the questionnaire, a 56% response rate. Hierarchical multiple regression analyses revealed psychosocial factors accounted for 75% of the variance in breast satisfaction, 68% for outcome satisfaction, and 46% forquality of life. Psychosocial well-being emerged as a significant predictor of satisfaction with breast appearance (β = .322) and outcome satisfaction (β = .406). Deep inferior epigastric perforator flap patients reported greater satisfaction with breast appearance (β = .120) and outcome satisfaction (β = .167). This study extends beyond the limited research by distinguishing between satisfaction with breast appearance and outcome satisfaction. The study provides evidence for the role of psychosocial factors predicting key patient reported outcomes and demonstrates the importance of psychosocial well-being and reconstruction type. The findings also highlight the need for healthcare providers to consider the psychosocial well-being of patients both preoperatively and post operatively and provide preliminary evidence for the use of deep inferior epigastric perforator reconstructions over other types of reconstructive procedures. Copyright © 2017 John Wiley & Sons, Ltd.
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Giorio, Chiara; Kehrwald, Natalie; Barbante, Carlo; Kalberer, Markus; King, Amy C.F.; Thomas, Elizabeth R.; Wolff, Eric W.; Zennaro, Piero
2018-01-01
Polar ice cores provide information about past climate and environmental changes over periods ranging from a few years up to 800,000 years. The majority of chemical studies have focused on determining inorganic components, such as major ions and trace elements as well as on their isotopic fingerprint. In this paper, we review the different classes of organic compounds that might yield environmental information, discussing existing research and what is needed to improve knowledge. We also discuss the problems of sampling, analysis and interpretation of organic molecules in ice. This review highlights the great potential for organic compounds to be used as proxies for anthropogenic activities, past fire events from different types of biomass, terrestrial biogenic emissions and marine biological activity, along with the possibility of inferring past temperature fluctuations and even large-scale climate variability. In parallel, comprehensive research needs to be done to assess the atmospheric stability of these compounds, their ability to be transported long distances in the atmosphere, and their stability in the archive in order to better interpret their fluxes in ice cores. In addition, specific decontamination procedures, analytical methods with low detection limits (ng/L or lower), fast analysis time and low sample requests need to be developed in order to ensure a good time resolution in the archive.
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Giorio, Chiara; Kehrwald, Natalie; Barbante, Carlo; Kalberer, Markus; King, Amy C. F.; Thomas, Elizabeth R.; Wolff, Eric W.; Zennaro, Piero
2018-03-01
Polar ice cores provide information about past climate and environmental changes over periods ranging from a few years up to 800,000 years. The majority of chemical studies have focused on determining inorganic components, such as major ions and trace elements as well as on their isotopic fingerprint. In this paper, we review the different classes of organic compounds that might yield environmental information, discussing existing research and what is needed to improve knowledge. We also discuss the problems of sampling, analysis and interpretation of organic molecules in ice. This review highlights the great potential for organic compounds to be used as proxies for anthropogenic activities, past fire events from different types of biomass, terrestrial biogenic emissions and marine biological activity, along with the possibility of inferring past temperature fluctuations and even large-scale climate variability. In parallel, comprehensive research needs to be done to assess the atmospheric stability of these compounds, their ability to be transported long distances in the atmosphere, and their stability in the archive in order to better interpret their fluxes in ice cores. In addition, specific decontamination procedures, analytical methods with low detection limits (ng/L or lower), fast analysis time and low sample requests need to be developed in order to ensure a good time resolution in the archive.
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International Nuclear Information System (INIS)
Lee, H.; Choi, S.; Kim, Y.-S.; Park, H.-S.; Seo, C.-W.; Kim, H.-J.; Lee, D.; Lee, Y.
2017-01-01
Chest digital tomosynthesis (CDT) is a promising new modality that provides 3D information by reconstructing limited projection views. CDT systems have been developed to improve the limitations of conventional radiography such as image degradation and low sensitivity. However, the development of reconstruction methods is challenging because of the limited projection views within various angular ranges. Optimization of reconstruction parameters for various reconsturction methods in CDT system also is needed. The purpose of this study was to investigate the feasibility of algebraic reconstruction technique (ART) method, and to evaluate the effect of the reconstruction parameters for our newly developed CDT system. We designed ART method with 41 projection views over an angular range of ±20°. To investigate the effect of reconstruction parameters, we measured the contrast-to-noise ratio (CNR), artifact spread function (ASF), and quality factor (QF) using LUNGMAN phantom included tumors. We found that the proper choice of reconstruction parameters such as relaxation parameter, initial guess, and number of iterations improved the quality of reconstructed images from the same projection views. Optimal values of ART relaxation parameter with uniform (UI) and back-projection (BP) initial guesses were 0.4 and 0.6, respectively. BP initial guess improved image quality in comparison with UI initial guess, in terms of providing a higher CNR and QF values with a faster speed. CNR and QF values improved with increasing number of iteration. Particularly, ART method with BP initial guess (when β = 0.6) after 3-terations provide satisfactory reconstructed image. In conclusion, the use of ART method with proper reconstruction parameters provided better image quality than FBP method as well as conventional radiography. These results indicated that the ART method with optimal reconstruction parameters could improve image quality for nodule detection using the CDT system.
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Lee, H.; Choi, S.; Lee, D.; Kim, Y.-s.; Park, H.-S.; Lee, Y.; Seo, C.-W.; Kim, H.-J.
2017-08-01
Chest digital tomosynthesis (CDT) is a promising new modality that provides 3D information by reconstructing limited projection views. CDT systems have been developed to improve the limitations of conventional radiography such as image degradation and low sensitivity. However, the development of reconstruction methods is challenging because of the limited projection views within various angular ranges. Optimization of reconstruction parameters for various reconsturction methods in CDT system also is needed. The purpose of this study was to investigate the feasibility of algebraic reconstruction technique (ART) method, and to evaluate the effect of the reconstruction parameters for our newly developed CDT system. We designed ART method with 41 projection views over an angular range of ±20°. To investigate the effect of reconstruction parameters, we measured the contrast-to-noise ratio (CNR), artifact spread function (ASF), and quality factor (QF) using LUNGMAN phantom included tumors. We found that the proper choice of reconstruction parameters such as relaxation parameter, initial guess, and number of iterations improved the quality of reconstructed images from the same projection views. Optimal values of ART relaxation parameter with uniform (UI) and back-projection (BP) initial guesses were 0.4 and 0.6, respectively. BP initial guess improved image quality in comparison with UI initial guess, in terms of providing a higher CNR and QF values with a faster speed. CNR and QF values improved with increasing number of iteration. Particularly, ART method with BP initial guess (when β = 0.6) after 3-terations provide satisfactory reconstructed image. In conclusion, the use of ART method with proper reconstruction parameters provided better image quality than FBP method as well as conventional radiography. These results indicated that the ART method with optimal reconstruction parameters could improve image quality for nodule detection using the CDT system.
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International Nuclear Information System (INIS)
Qi, Jinyi; Klein, Gregory J.; Huesman, Ronald H.
2000-01-01
A positron emission mammography scanner is under development at our Laboratory. The tomograph has a rectangular geometry consisting of four banks of detector modules. For each detector, the system can measure the depth of interaction information inside the crystal. The rectangular geometry leads to irregular radial and angular sampling and spatially variant sensitivity that are different from conventional PET systems. Therefore, it is of importance to study the image properties of the reconstructions. We adapted the theoretical analysis that we had developed for conventional PET systems to the list mode likelihood reconstruction for this tomograph. The local impulse response and covariance of the reconstruction can be easily computed using FFT. These theoretical results are also used with computer observer models to compute the signal-to-noise ratio for lesion detection. The analysis reveals the spatially variant resolution and noise properties of the list mode likelihood reconstruction. The theoretical predictions are in good agreement with Monte Carlo results
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van Bree, Loes G.J.; Rijpstra, W. Irene C; Al-Dhabi, N.A.; Verschuren, D.; Sinninghe Damste, J.S.; de Leeuw, J.W.
2016-01-01
We studied the high-resolution and well-dated 25,000 year sedimentary record of Lake Challa, a deep tropical crater lake in equatorial East Africa, to explore new proxies for paleoenvironmental and paleohydrological change. Sedimentary biomarker analysis revealed the presence of des-A-triterpenoids
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Strategies and knowledge used when reconstructing the dates of autobiographical events
DEFF Research Database (Denmark)
Holm, Tine; Thomsen, Dorthe Kirkegaard
Strategies and knowledge used when reconstructing the dates of autobiographical events. Tine Holm and Dorthe Kierkegaard Thomsen Individuals rarely remember the dates of specific memories. Rather they reconstruct dates using a variety of strategies and knowledge. In this study, we examined how...... often individuals use and combine different types of strategies and knowledge. Forty-five participants were each presented with diary descriptions of approximately 42 events from their first term at university that they had written 3 ½ years prior and were asked to date remembered events while...... they thought out loud. The results revealed that participants most frequently used period knowledge as a strategy in dating events. Other frequently used strategies were temporal schemas and temporal landmarks. Participants often combined strategies. Most frequently they combined period knowledge and temporal...
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Entropy and transverse section reconstruction
International Nuclear Information System (INIS)
Gullberg, G.T.
1976-01-01
A new approach to the reconstruction of a transverse section using projection data from multiple views incorporates the concept of maximum entropy. The principle of maximizing information entropy embodies the assurance of minimizing bias or prejudice in the reconstruction. Using maximum entropy is a necessary condition for the reconstructed image. This entropy criterion is most appropriate for 3-D reconstruction of objects from projections where the system is underdetermined or the data are limited statistically. This is the case in nuclear medicine time limitations in patient studies do not yield sufficient projections
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Breast reconstruction - natural tissue
... flap; TRAM; Latissimus muscle flap with a breast implant; DIEP flap; DIEAP flap; Gluteal free flap; Transverse upper gracilis flap; TUG; Mastectomy - breast reconstruction with natural tissue; Breast cancer - breast reconstruction with natural tissue
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Jini service to reconstruct tomographic data
Knoll, Peter; Mirzaei, S.; Koriska, K.; Koehn, H.
2002-06-01
A number of imaging systems rely on the reconstruction of a 3- dimensional model from its projections through the process of computed tomography (CT). In medical imaging, for example magnetic resonance imaging (MRI), positron emission tomography (PET), and Single Computer Tomography (SPECT) acquire two-dimensional projections of a three dimensional projections of a three dimensional object. In order to calculate the 3-dimensional representation of the object, i.e. its voxel distribution, several reconstruction algorithms have been developed. Currently, mainly two reconstruct use: the filtered back projection(FBP) and iterative methods. Although the quality of iterative reconstructed SPECT slices is better than that of FBP slices, such iterative algorithms are rarely used for clinical routine studies because of their low availability and increased reconstruction time. We used Jini and a self-developed iterative reconstructions algorithm to design and implement a Jini reconstruction service. With this service, the physician selects the patient study from a database and a Jini client automatically discovers the registered Jini reconstruction services in the department's Intranet. After downloading the proxy object the this Jini service, the SPECT acquisition data are reconstructed. The resulting transaxial slices are visualized using a Jini slice viewer, which can be used for various imaging modalities.
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Huang, Sing-Han; Lo, Yu-Shu; Luo, Yong-Chun; Tseng, Yu-Yao; Yang, Jinn-Moon
2018-03-19
One of the crucial steps toward understanding the associations among molecular interactions, pathways, and diseases in a cell is to investigate detailed atomic protein-protein interactions (PPIs) in the structural interactome. Despite the availability of large-scale methods for analyzing PPI networks, these methods often focused on PPI networks using genome-scale data and/or known experimental PPIs. However, these methods are unable to provide structurally resolved interaction residues and their conservations in PPI networks. Here, we reconstructed a human three-dimensional (3D) structural PPI network (hDiSNet) with the detailed atomic binding models and disease-associated mutations by enhancing our PPI families and 3D-domain interologs from 60,618 structural complexes and complete genome database with 6,352,363 protein sequences across 2274 species. hDiSNet is a scale-free network (γ = 2.05), which consists of 5177 proteins and 19,239 PPIs with 5843 mutations. These 19,239 structurally resolved PPIs not only expanded the number of PPIs compared to present structural PPI network, but also achieved higher agreement with gene ontology similarities and higher co-expression correlation than the ones of 181,868 experimental PPIs recorded in public databases. Among 5843 mutations, 1653 and 790 mutations involved in interacting domains and contacting residues, respectively, are highly related to diseases. Our hDiSNet can provide detailed atomic interactions of human disease and their associated proteins with mutations. Our results show that the disease-related mutations are often located at the contacting residues forming the hydrogen bonds or conserved in the PPI family. In addition, hDiSNet provides the insights of the FGFR (EGFR)-MAPK pathway for interpreting the mechanisms of breast cancer and ErbB signaling pathway in brain cancer. Our results demonstrate that hDiSNet can explore structural-based interactions insights for understanding the mechanisms of disease
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International Nuclear Information System (INIS)
Mao Xinbo; Zhu Xinjin; Zeng Huiliang; Chen Xueguang
2005-01-01
Objective: An evaluation of the reconstructed imaging of coronary arteries with 16-slice spiral CT in diagnosis of coronary disease. Methods: The reconstructed images of coronary arteries obtained on a 16-slice spiral CT scanner were reviewed in 60 cases, on which the following techniques were applied: retrospective ECG-gating, Segment method with 75% R-R interval, volume rendering technique (VRT), maximum intensity projection (MIP), mulfiplanar reconstruction (MPR), curved planar reconstruction (CPR) and CT virtual endoscopy (CTVE). Results: In all 60 cases, different stages of CHD were revealed in 21 cases; none abnormality was found in 33; and images were in poor quality in 2 cases, which was available for diagnosis. There were 4 stents planted in 4 cases: soft plaque suspected in lcase, patent in 2 and occlude in 1. Conclusion: The reconstructed imaging of coronary arteries with 16-slice spiral CT is superior modality in evaluation of severe coronary stenosis, plaques, and the pantency of the intra-luminal stents, which is an efficient and non-invasive imaging in diagnosis of early-stage CHD and screening in high risk population. (authors)
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Reconstruction of the anterior cruciate ligament of the knee
Directory of Open Access Journals (Sweden)
Nikolić Dragan
2006-01-01
Full Text Available Background/Aim. Numerous papers on reconstruction of the anterior cruciate ligament of the knee (ACL contribute to the significance of this method. The aim of this study was to analyze the outcome of the use of this surgical treatment method regardless the type of surgical intervention, graft, and the choice of the material for fixing. Methods. The study included 324 patients treated within the period from April 1997 to April 2004. Arthroscopically assisted ACL reconstruction was typically performed using the central one-third of the patellar ligament, as a graft, with bone blocks. Fixing was performed using screws (spongy or interferential, Mitek type. In the cases who required revision of the surgery, we used a graft m. semitendinosus and m. gracilise (STG or a graft of the patellar ligament (B-Pt-B. Fixation in these cases was performed using absorptive wedges according to the Rigidfix technique or metallic implants. Results. The analysis included the results of the reconstruction of the anterior cruciate ligament of the knee (B-Pt-B or STG graft in 139 of the knees. Chronic injuries were revealed in 132 (94.9% of the knees. According to the anamnesis and clinical findings, the feeling of instability prevailed in 132 (94.9% of the knees, pain in 72 (51.7%, effluents in 24 (17.2%, and blockages in 13 (9.3%. Early and late postoperative complications were noticeable in 3.5% each. Hypotrophy of the upper knee musculature up to 2 cm was present in 53.9% of the operated knees, while minor contractions in 13.6% of them. The final result of the reconstruction graded begusing the Lysholm Scale was 85.2, simultaneous reconstructions of other ligaments 75.3, and revision surgery 68.0. First-grade degenerative postoperative changes according to the K/L Scale were found in 55.0% of the surgically treated knees, while the worst, four-grade one in 2.5%. Conclusion. On the basis of these findings, we can conclude that this method is the method of choice in
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Multi-century cool- and warm-season rainfall reconstructions for Australia's major climatic regions
Freund, Mandy; Henley, Benjamin J.; Karoly, David J.; Allen, Kathryn J.; Baker, Patrick J.
2017-11-01
Australian seasonal rainfall is strongly affected by large-scale ocean-atmosphere climate influences. In this study, we exploit the links between these precipitation influences, regional rainfall variations, and palaeoclimate proxies in the region to reconstruct Australian regional rainfall between four and eight centuries into the past. We use an extensive network of palaeoclimate records from the Southern Hemisphere to reconstruct cool (April-September) and warm (October-March) season rainfall in eight natural resource management (NRM) regions spanning the Australian continent. Our bi-seasonal rainfall reconstruction aligns well with independent early documentary sources and existing reconstructions. Critically, this reconstruction allows us, for the first time, to place recent observations at a bi-seasonal temporal resolution into a pre-instrumental context, across the entire continent of Australia. We find that recent 30- and 50-year trends towards wetter conditions in tropical northern Australia are highly unusual in the multi-century context of our reconstruction. Recent cool-season drying trends in parts of southern Australia are very unusual, although not unprecedented, across the multi-century context. We also use our reconstruction to investigate the spatial and temporal extent of historical drought events. Our reconstruction reveals that the spatial extent and duration of the Millennium Drought (1997-2009) appears either very much below average or unprecedented in southern Australia over at least the last 400 years. Our reconstruction identifies a number of severe droughts over the past several centuries that vary widely in their spatial footprint, highlighting the high degree of diversity in historical droughts across the Australian continent. We document distinct characteristics of major droughts in terms of their spatial extent, duration, intensity, and seasonality. Compared to the three largest droughts in the instrumental period (Federation Drought
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Multi-century cool- and warm-season rainfall reconstructions for Australia's major climatic regions
Directory of Open Access Journals (Sweden)
M. Freund
2017-11-01
Full Text Available Australian seasonal rainfall is strongly affected by large-scale ocean–atmosphere climate influences. In this study, we exploit the links between these precipitation influences, regional rainfall variations, and palaeoclimate proxies in the region to reconstruct Australian regional rainfall between four and eight centuries into the past. We use an extensive network of palaeoclimate records from the Southern Hemisphere to reconstruct cool (April–September and warm (October–March season rainfall in eight natural resource management (NRM regions spanning the Australian continent. Our bi-seasonal rainfall reconstruction aligns well with independent early documentary sources and existing reconstructions. Critically, this reconstruction allows us, for the first time, to place recent observations at a bi-seasonal temporal resolution into a pre-instrumental context, across the entire continent of Australia. We find that recent 30- and 50-year trends towards wetter conditions in tropical northern Australia are highly unusual in the multi-century context of our reconstruction. Recent cool-season drying trends in parts of southern Australia are very unusual, although not unprecedented, across the multi-century context. We also use our reconstruction to investigate the spatial and temporal extent of historical drought events. Our reconstruction reveals that the spatial extent and duration of the Millennium Drought (1997–2009 appears either very much below average or unprecedented in southern Australia over at least the last 400 years. Our reconstruction identifies a number of severe droughts over the past several centuries that vary widely in their spatial footprint, highlighting the high degree of diversity in historical droughts across the Australian continent. We document distinct characteristics of major droughts in terms of their spatial extent, duration, intensity, and seasonality. Compared to the three largest droughts in the instrumental
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BREAST RECONSTRUCTIONS AFTER BREAST CANCER TREATING
Directory of Open Access Journals (Sweden)
Erik Vrabič
2018-02-01
Full Text Available Background. Breasts are an important symbol of physical beauty, feminity, mothering and sexual desire through the entire history of mankind. Lost of the whole or part of the breast is functional and aesthetic disturbance for woman. It is understandable, that the woman, who is concerned over breast loss, is as appropriate as another person´s concern over the loss of a limb or other body part. Before the 1960, breast reconstruction was considered as a dangerous procedure and it was almost prohibited. Considering the psychological importance of the breast in modern society, the possibility of breast reconstruction for the woman about to undergo a mastectomy is a comforting alternative. We can perform breast reconstruction with autologous tissue (autologous reconstruction, with breast implants and combination of both methods. For autologous reconstruction we can use local tissue (local flaps, or tissue from distant parts of the body (free vascular tissue transfer. Tissue expansion must be performed first, in many cases of breast reconstructions with breast implants. Conclusions. Possibility of breast reconstruction made a big progress last 3 decades. Today we are able to reconstruct almost every defect of the breast and the entire breast. Breast reconstruction rise the quality of life for breast cancer patients. Breast reconstruction is a team work of experts from many medicine specialites. In Slovenia we can offer breast reconstruction for breast cancer patients in Ljubljana, where plastic surgeons from Clinical Department for Plastic Surgery and Burns cooperate with oncologic surgeons. Ten years ago a similar cooperation between plastic surgeons and surgeons of the Centre for Breast Diseases was established in Maribor.
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International Nuclear Information System (INIS)
Hellebust, Taran Paulsen; Tanderup, Kari; Bergstrand, Eva Stabell; Knutsen, Bjoern Helge; Roeislien, Jo; Olsen, Dag Rune
2007-01-01
The purpose of this study is to investigate whether the method of applicator reconstruction and/or the applicator orientation influence the dose calculation to points around the applicator for brachytherapy of cervical cancer with CT-based treatment planning. A phantom, containing a fixed ring applicator set and six lead pellets representing dose points, was used. The phantom was CT scanned with the ring applicator at four different angles related to the image plane. In each scan the applicator was reconstructed by three methods: (1) direct reconstruction in each image (DR) (2) reconstruction in multiplanar reconstructed images (MPR) and (3) library plans, using pre-defined applicator geometry (LIB). The doses to the lead pellets were calculated. The relative standard deviation (SD) for all reconstruction methods was less than 3.7% in the dose points. The relative SD for the LIB method was significantly lower (p < 0.05) than for the DR and MPR methods for all but two points. All applicator orientations had similar dose calculation reproducibility. Using library plans for applicator reconstruction gives the most reproducible dose calculation. However, with restrictive guidelines for applicator reconstruction the uncertainties for all methods are low compared to other factors influencing the accuracy of brachytherapy
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Delayed vaginal reconstruction in the fibrotic pelvis following radiation or previous reconstruction
International Nuclear Information System (INIS)
Berek, J.S.; Hacker, N.F.; Lagasse, L.D.; Smith, M.L.
1983-01-01
Vaginal reconstruction was performed in 14 patients who had developed vaginal stenosis secondary to extensive pelvic fibrosis after pelvic radiation therapy (12 patients) or prior vaginal reconstruction (2 patients). Sixteen procedures were performed using a split-thickness skin graft. All patients had satisfactory vaginal restoration, and 12 patients reported good vaginal function. No fistula developed as a result of the operative procedure, but one patient later developed a rectovaginal fistula resulting from tumor recurrence. Successful vaginal reconstruction can be achieved even years after initial therapy in patients who develop an obliterated vagina from previous radiation or surgery
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Energy Technology Data Exchange (ETDEWEB)
Salzer, M.W. [Laboratory of Tree-Ring Research, The University of Arizona, Tucson, Arizona, 85721 (United States); Kipfmueller, K.F. [Department of Geography, University of Minnesota, Minneapolis, MN, 55455 (United States)
2005-06-01
Two independent calibrated and verified climate reconstructions from ecologically contrasting tree-ring sites in the southern Colorado Plateau, U.S.A. reveal decadal-scale climatic trends during the past two millennia. Combining precisely dated annual mean-maximum temperature and October through July precipitation reconstructions yields an unparalleled record of climatic variability. The approach allows for the identification of thirty extreme wet periods and thirty-five extreme dry periods in the 1,425-year precipitation reconstruction and 30 extreme cool periods and 26 extreme warm periods in 2,262-year temperature reconstruction. In addition, the reconstructions were integrated to identify intervals when conditions were extreme in both climatic variables (cool/dry, cool/wet, warm/dry, warm/wet). Noteworthy in the reconstructions are the post-1976 warm/wet period, unprecedented in the 1,425-year record both in amplitude and duration, anomalous and prolonged late 20th century warmth, that while never exceeded, was nearly equaled in magnitude for brief intervals in the past, and substantial decadal-scale variability within the Medieval Warm Period and Little Ice Age intervals.
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Breast reconstruction following mastectomy: current status in Australia.
Sandelin, Kerstin; King, Elizabeth; Redman, Sally
2003-09-01
Although breast reconstruction provides some advantages for women following mastectomy, few Australian breast cancer patients currently receive reconstruction. In Australia, the routine provision of breast reconstruction will require the development of specific health service delivery models. The present paper reports an analysis of the provision of breast reconstruction in eight sites in Australia. A semi-structured telephone interview was conducted with 10 surgeons offering breast reconstruction as part of their practice, including nine breast or general surgeons and one plastic surgeon. Surgeons reported offering breast reconstruction to all women facing mastectomy; the proportion of women deciding to have breast reconstruction varied between sites with up to 50% of women having a reconstruction at some sites. Most sites offered three types of reconstruction. Two pathways emerged: either the breast surgeon performed the breast surgery in a team with the plastic surgeon who undertook the breast reconstruction or the breast surgeon provided both the breast surgery and the reconstruction. Considerable waiting times for breast reconstruction were reported in the public sector particularly for delayed reconstruction. Surgeons reported receiving training in breast reconstruction from plastic surgeons or from a breast surgery team that performed reconstructions; a number had been trained overseas. No audits of breast reconstruction were being undertaken. Breast reconstruction can be offered on a routine basis in Australia in both the private and public sectors. Women may be more readily able to access breast reconstruction when it is provided by a breast surgeon alone, but the range of reconstruction options may be more limited. If access to breast reconstruction is to be increased, there will be a need to: (i) develop effective models for the rural sector taking account of the lack of plastic surgeons; (ii) address waiting times for reconstruction surgery in the
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Vezzosi, Raúl I.; Kerber, Leonardo
2018-03-01
The South American porcupines (Erethizontidae) are included in two genera: Chaetomys and Coendou. The latter is a very speciose taxon, with about 13 living species. During at least the late Pliocene-early Pleistocene, erethizontids immigrated to Central and North America during the Great American Biotic Interchange. Although some Pleistocene fossils have been reported, the Quaternary history of this clade is still understudied. The only known extinct species is Coendou magnus. In this work, a fossil of a porcupine is reported from an Upper Pleistocene fluvial sedimentary sequence cropping out in the Northern Pampa geomorphological region, Santa Fe Province, Argentina. Despite this group having different living forms widely distributed in South American Neotropical woodland habitats, the Pleistocene occurrences of Erethizontidae are scarce and limited to Upper Pleistocene deposits from Bolivia, Brazil, and Uruguay. Currently, the specimen here reported represents the only Pleistocene porcupine from Argentina with a stratigraphical context. The morphological characters as well as the dimensions indicate that it is close to the Pleistocene erethizontid Coendou magnus. In this context, the presence of this erethizontid in such a southern locality, together with other taxa recorded from this site and the associated geological and paleoenvironmental evidence, indicates subtropical conditions, compared with the current conditions, which may have allowed a southern displacement of taxa more related to woodlands and xeric subtropical environments.
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Petz recovery versus matrix reconstruction
Holzäpfel, Milan; Cramer, Marcus; Datta, Nilanjana; Plenio, Martin B.
2018-04-01
The reconstruction of the state of a multipartite quantum mechanical system represents a fundamental task in quantum information science. At its most basic, it concerns a state of a bipartite quantum system whose subsystems are subjected to local operations. We compare two different methods for obtaining the original state from the state resulting from the action of these operations. The first method involves quantum operations called Petz recovery maps, acting locally on the two subsystems. The second method is called matrix (or state) reconstruction and involves local, linear maps that are not necessarily completely positive. Moreover, we compare the quantities on which the maps employed in the two methods depend. We show that any state that admits Petz recovery also admits state reconstruction. However, the latter is successful for a strictly larger set of states. We also compare these methods in the context of a finite spin chain. Here, the state of a finite spin chain is reconstructed from the reduced states of a few neighbouring spins. In this setting, state reconstruction is the same as the matrix product operator reconstruction proposed by Baumgratz et al. [Phys. Rev. Lett. 111, 020401 (2013)]. Finally, we generalize both these methods so that they employ long-range measurements instead of relying solely on short-range correlations embodied in such local reduced states. Long-range measurements enable the reconstruction of states which cannot be reconstructed from measurements of local few-body observables alone and hereby we improve existing methods for quantum state tomography of quantum many-body systems.
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Hobbs, Joanne K; Prentice, Erica J; Groussin, Mathieu; Arcus, Vickery L
2015-10-01
Ancestral sequence reconstruction has been widely used to study historical enzyme evolution, both from biochemical and cellular perspectives. Two properties of reconstructed ancestral proteins/enzymes are commonly reported--high thermostability and high catalytic activity--compared with their contemporaries. Increased protein stability is associated with lower aggregation rates, higher soluble protein abundance and a greater capacity to evolve, and therefore, these proteins could be considered "superior" to their contemporary counterparts. In this study, we investigate the relationship between the favourable in vitro biochemical properties of reconstructed ancestral enzymes and the organismal fitness they confer in vivo. We have previously reconstructed several ancestors of the enzyme LeuB, which is essential for leucine biosynthesis. Our initial fitness experiments revealed that overexpression of ANC4, a reconstructed LeuB that exhibits high stability and activity, was only able to partially rescue the growth of a ΔleuB strain, and that a strain complemented with this enzyme was outcompeted by strains carrying one of its descendants. When we expanded our study to include five reconstructed LeuBs and one contemporary, we found that neither in vitro protein stability nor the catalytic rate was correlated with fitness. Instead, fitness showed a strong, negative correlation with estimated evolutionary age (based on phylogenetic relationships). Our findings suggest that, for reconstructed ancestral enzymes, superior in vitro properties do not translate into organismal fitness in vivo. The molecular basis of the relationship between fitness and the inferred age of ancestral LeuB enzymes is unknown, but may be related to the reconstruction process. We also hypothesise that the ancestral enzymes may be incompatible with the other, contemporary enzymes of the metabolic network.
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Li, Mingyong; Duan, Jianping; Wang, Lily; Zhu, Haifeng
2018-04-01
Although several tree-ring density-based summer/late summer temperature reconstructions have been developed on the Tibetan Plateau (TP), the understanding of the local/regional characteristics of summer temperature fluctuations on a long-term scale in some regions is still limited. To improve our understanding in these aspects, more local or regional summer temperature reconstructions extending back over several centuries are required. In this study, a new mean latewood density (LWD) chronology from Abies georgei var. smithii from the upper tree line of Sygera Mountain on the southeastern TP was developed to reconstruct the late summer temperature variability since 1820 CE. The bootstrapped correlation analysis showed that the LWD chronology index was significantly and positively correlated with the late summer (August-September) mean temperatures (r1950-2008 = 0.63, p < 0.001) recorded at the nearest meteorological station and that this reconstruction has considerable potential to represent the late summer temperature variability at the regional scale. Our late summer temperature reconstruction revealed three obvious cold periods (i.e., 1872-1908, 1913-1937 and 1941-1966) and two relatively warm phases (i.e., 1821-1871 and 1970-2008) over the past two centuries. Comparisons of our reconstruction with other independent tree-ring-based temperature reconstructions, glacier fluctuations and historical documental records from neighboring regions showed good agreement in these relatively cold and warm intervals. Our reconstruction exhibits an overall increasing temperature trend since the 1960s, providing new evidence supporting the recent warming of the TP. Moreover, our results also indicate that the late summer temperature variability of Sygera Mountain on the southeastern TP has potential links with the Pacific Decadal Oscillation (PDO).
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Zabolotnyy, V. B.; Fürsich, K.; Green, R. J.; Lutz, P.; Treiber, K.; Min, Chul-Hee; Dukhnenko, A. V.; Shitsevalova, N. Y.; Filipov, V. B.; Kang, B. Y.; Cho, B. K.; Sutarto, R.; He, Feizhou; Reinert, F.; Inosov, D. S.; Hinkov, V.
2018-05-01
Samarium hexaboride (SmB6), a Kondo insulator with mixed valence, has recently attracted much attention as a possible host for correlated topological surface states. Here, we use a combination of x-ray absorption and reflectometry techniques, backed up with a theoretical model for the resonant M4 ,5 absorption edge of Sm and photoemission data, to establish laterally averaged chemical and valence depth profiles at the surface of SmB6. We show that upon cleaving, the highly polar (001) surface of SmB6 undergoes substantial chemical and valence reconstruction, resulting in boron termination and a Sm3 + dominated subsurface region. Whereas at room temperature, the reconstruction occurs on a timescale of less than 2 h, it takes about 24 h below 50 K. The boron termination is eventually established, irrespective of the initial termination. Our findings reconcile earlier depth resolved photoemission and scanning tunneling spectroscopy studies performed at different temperatures and are important for better control of surface states in this system.
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Katkovnik, V; Shevkunov, I A; Petrov, N V; Egiazarian, K
2015-05-15
This work presents the new method for wavefront reconstruction from a digital hologram recorded in off-axis configuration. The main feature of the proposed algorithm is a good ability for noise filtration due to the original formulation of the problem taking into account the presence of noise in the recorded intensity distribution and the sparse phase and amplitude reconstruction approach with the data-adaptive block-matching 3D technique. Basically, the sparsity assumes that low dimensional models can be used for phase and amplitude approximations. This low dimensionality enables strong suppression of noisy components and accurate revealing of the main features of the signals of interest. The principal point is that dictionaries of these sparse models are not known in advance and reconstructed from given noisy observations in a multiobjective optimization procedure. We show experimental results demonstrating the effectiveness of our approach.
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Chen, Jiaying; Chen, Ying; Hu, Zhen; Liu, Guangyu; Shen, Zhenzhou; Shao, Zhimin; Wu, Jiong
2015-01-01
Background The goal of this study was to evaluate patient satisfaction with four common types of breast reconstruction performed at our institution: latissimus dorsi myocutaneous (LDM) flap reconstruction with or without implants, pedicled transverse rectus abdominis musculocutaneous (TRAM) flap reconstruction, and free deep inferior epigastric perforator (DIEP) flap reconstruction. Methods A custom survey consisting of questions that assessed general and aesthetic satisfaction was sent to patients who had undergone breast reconstruction in the last 5 years. The clinical data and details of the surgery were also collected from the patients who returned the surveys. We compared satisfaction rates across the four breast reconstruction types and analyzed the effects of various factors on overall general and aesthetic satisfaction rates using a binary logistic regression model. Result A total of 207 (72%) patients completed the questionnaires. Overall, significant differences in general and aesthetic satisfaction among the four procedures were not observed. A multivariate analysis revealed that the factor “complications” (p = 0.001) played a significant role in general satisfaction and that the factors “> 2 years since reconstruction” (p = 0.043) and “age > 35 years” (p = 0.05) played significant roles in overall aesthetic satisfaction. Conclusion The present study demonstrated that the type of breast reconstruction might not influence satisfaction in Chinese patients. PMID:26562294
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A Graph-Based Approach for 3D Building Model Reconstruction from Airborne LiDAR Point Clouds
Directory of Open Access Journals (Sweden)
Bin Wu
2017-01-01
Full Text Available 3D building model reconstruction is of great importance for environmental and urban applications. Airborne light detection and ranging (LiDAR is a very useful data source for acquiring detailed geometric and topological information of building objects. In this study, we employed a graph-based method based on hierarchical structure analysis of building contours derived from LiDAR data to reconstruct urban building models. The proposed approach first uses a graph theory-based localized contour tree method to represent the topological structure of buildings, then separates the buildings into different parts by analyzing their topological relationships, and finally reconstructs the building model by integrating all the individual models established through the bipartite graph matching process. Our approach provides a more complete topological and geometrical description of building contours than existing approaches. We evaluated the proposed method by applying it to the Lujiazui region in Shanghai, China, a complex and large urban scene with various types of buildings. The results revealed that complex buildings could be reconstructed successfully with a mean modeling error of 0.32 m. Our proposed method offers a promising solution for 3D building model reconstruction from airborne LiDAR point clouds.
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Breast Reconstruction After Solid Organ Transplant.
Koonce, Stephanie L; Giles, Brian; McLaughlin, Sarah A; Perdikis, Galen; Waldorf, James; Lemaine, Valerie; TerKonda, Sarvam
2015-09-01
Solid organ transplant patients frequently develop posttransplant malignancies including breast cancer. They may desire breast reconstruction after mastectomy, which could potentially be complicated by their transplant status, immunosuppressive regimen, and previous operations. We review our experience with patients who have undergone solid organ transplant and subsequent breast reconstruction after mastectomy After institutional review board approval, we queried our prospective breast reconstruction and solid organ transplant databases for corresponding patients. Inclusion criteria comprised breast reconstruction after solid organ transplant. A chart review was conducted of identified patients. Seventeen patients were identified: 1 pulmonary transplant, 4 cardiac transplants, 2 liver transplants, 1 pancreas transplant, 2 combined kidney/pancreas transplants, and 7 kidney transplants. Indications for mastectomy included posttransplant malignancy and prophylaxis. Median time from transplant to completion of reconstruction was 186 months (range, 11-336 months). Median age at transplant was 34.5 years (range, 21-65 years) with the median age of the patients at reconstructive surgery 51.5 years (range, 34-71 years). Median body mass index was 25.3 (range, 21.3-46.5). No significant complications were noted after reconstructive surgery. All patients were on full immunosuppression at time of reconstruction. Breast reconstruction is a viable option for transplant patients after mastectomy and should not be refused based on their transplant status. Close coordination with the transplant team and careful preoperative planning is essential for optimal outcomes.
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Lau, Tsz; Kaneko, Yuji; van Loveren, Harry; Borlongan, Cesario V.
2012-01-01
Moderate to severe traumatic brain injury (TBI) often results in malformations to the skull. Aesthetic surgical maneuvers may offer normalized skull structure, but inconsistent surgical closure of the skull area accompanies TBI. We examined whether wound closure by replacement of skull flap and bone wax would allow aesthetic reconstruction of the TBI-induced skull damage without causing any detrimental effects to the cortical tissue. Adult male Sprague-Dawley rats were subjected to TBI using the controlled cortical impact (CCI) injury model. Immediately after the TBI surgery, animals were randomly assigned to skull flap replacement with or without bone wax or no bone reconstruction, then were euthanized at five days post-TBI for pathological analyses. The skull reconstruction provided normalized gross bone architecture, but 2,3,5-triphenyltetrazolium chloride and hematoxylin and eosin staining results revealed larger cortical damage in these animals compared to those that underwent no surgical maneuver at all. Brain swelling accompanied TBI, especially the severe model, that could have relieved the intracranial pressure in those animals with no skull reconstruction. In contrast, the immediate skull reconstruction produced an upregulation of the edema marker aquaporin-4 staining, which likely prevented the therapeutic benefits of brain swelling and resulted in larger cortical infarcts. Interestingly, TBI animals introduced to a delay in skull reconstruction (i.e., 2 days post-TBI) showed significantly reduced edema and infarcts compared to those exposed to immediate skull reconstruction. That immediate, but not delayed, skull reconstruction may exacerbate TBI-induced cortical tissue damage warrants a careful consideration of aesthetic repair of the skull in TBI. PMID:22438975
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Prosthetic breast reconstruction: indications and update
Quinn, Tam T.; Miller, George S.; Rostek, Marie; Cabalag, Miguel S.; Rozen, Warren M.
2016-01-01
Background Despite 82% of patients reporting psychosocial improvement following breast reconstruction, only 33% patients choose to undergo surgery. Implant reconstruction outnumbers autologous reconstruction in many centres. Methods A systematic review of the literature was undertaken. Inclusion required: (I) Meta-analyses or review articles; (II) adult patients aged 18 years or over undergoing alloplastic breast reconstruction; (III) studies including outcome measures; (IV) case series with more than 10 patients; (V) English language; and (VI) publication after 1st January, 2000. Results After full text review, analysis and data extraction was conducted for a total of 63 articles. Definitive reconstruction with an implant can be immediate or delayed. Older patients have similar or even lower complication rates to younger patients. Complications include capsular contracture, hematoma and infection. Obesity, smoking, large breasts, diabetes and higher grade tumors are associated with increased risk of wound problems and reconstructive failure. Silicone implant patients have higher capsular contracture rates but have higher physical and psychosocial function. There were no associations made between silicone implants and cancer or systemic disease. There were no differences in outcomes or complications between round and shaped implants. Textured implants have a lower risk of capsular contracture than smooth implants. Smooth implants are more likely to be displaced as well as having higher rates of infection. Immediate breast reconstruction (IBR) gives the best aesthetic outcome if radiotherapy is not required but has a higher rate of capsular contracture and implant failure. Delayed-immediate reconstruction patients can achieve similar aesthetic results to IBR whilst preserving the breast skin if radiotherapy is required. Delayed breast reconstruction (DBR) patients have fewer complications than IBR patients. Conclusions Implant reconstruction is a safe and popular
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Noda, Y; Goshima, S; Nagata, S; Miyoshi, T; Kawada, H; Kawai, N; Tanahashi, Y; Matsuo, M
2018-06-01
To compare right adrenal vein (RAV) visualisation and contrast enhancement degree on adrenal venous phase images reconstructed using adaptive statistical iterative reconstruction (ASiR) and model-based iterative reconstruction (MBIR) techniques. This prospective study was approved by the institutional review board, and written informed consent was waived. Fifty-seven consecutive patients who underwent adrenal venous phase imaging were enrolled. The same raw data were reconstructed using ASiR 40% and MBIR. The expert and beginner independently reviewed computed tomography (CT) images. RAV visualisation rates, background noise, and CT attenuation of the RAV, right adrenal gland, inferior vena cava (IVC), hepatic vein, and bilateral renal veins were compared between the two reconstruction techniques. RAV visualisation rates were higher with MBIR than with ASiR (95% versus 88%, p=0.13 in expert and 93% versus 75%, p=0.002 in beginner, respectively). RAV visualisation confidence ratings with MBIR were significantly greater than with ASiR (pASiR (pASiR (p=0.0013 and 0.02). Reconstruction of adrenal venous phase images using MBIR significantly reduces background noise, leading to an improvement in the RAV visualisation compared with ASiR. Copyright © 2018 The Royal College of Radiologists. Published by Elsevier Ltd. All rights reserved.
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Directory of Open Access Journals (Sweden)
Brown James
2007-12-01
Full Text Available This article aims to discuss the various defects that occur with maxillectomy with a full review of the literature and discussion of the advantages and disadvantages of the various techniques described. Reconstruction of the maxilla can be relatively simple for the standard low maxillectomy that does not involve the orbital floor (Class 2. In this situation the structure of the face is less damaged and the there are multiple reconstructive options for the restoration of the maxilla and dental alveolus. If the maxillectomy includes the orbit (Class 4 then problems involving the eye (enopthalmos, orbital dystopia, ectropion and diplopia are avoided which simplifies the reconstruction. Most controversy is associated with the maxillectomy that involves the orbital floor and dental alveolus (Class 3. A case is made for the use of the iliac crest with internal oblique as an ideal option but there are other methods, which may provide a similar result. A multidisciplinary approach to these patients is emphasised which should include a prosthodontist with a special expertise for these defects.
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Patient Information Needs and Breast Reconstruction After Mastectomy: A Qualitative Meta-Synthesis.
Carr, Tracey L; Groot, Gary; Cochran, David; Holtslander, Lorraine
2018-04-27
Although many women benefit from breast reconstruction after mastectomy, several studies report women's dissatisfaction with the level of information they were provided with before reconstruction. The present meta-synthesis examines the qualitative literature that explores women's experiences of breast reconstruction after mastectomy and highlights women's healthcare information needs. After a comprehensive search of 6 electronic databases (CINAHL, Cochrane Library, EMBASE, MEDLINE, PsycINFO, and Scopus), we followed the methodology for synthesizing qualitative research. The search produced 423 studies, which were assessed against 5 inclusion criteria. A meta-synthesis methodology was used to analyze the data through taxonomic classification and constant targeted comparison. Some 17 studies met the inclusion criteria, and findings from 16 studies were synthesized. The role of the healthcare practitioner is noted as a major influence on women's expectations, and in some instances, women did not feel adequately informed about the outcomes of surgery and the recovery process. In general, women's desire for normality and effective emotional coping shapes their information needs. The information needs of women are better understood after considering women's actual experiences with breast reconstruction. It is important to inform women of the immediate outcomes of reconstruction surgery and the recovery process. In an attempt to better address women's information needs, healthcare practitioners should discover women's initial expectations of reconstruction as a starting point in the consultation. In addition, the research revealed the importance of the nurse navigator in terms of assisting women through the recovery process.This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND), where it is permissible to download and share the work provided it is properly cited. The work
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Directory of Open Access Journals (Sweden)
Makisha Nikolay
2017-01-01
Full Text Available Protection of water bodies has a strict dependence on reliable operation of engineering systems and facilities for water supply and sewage. The majority of these plants and stations has been constructed in 1970-1980's in accordance with rules and regulations of that time. So now most of them require reconstruction due to serious physical or/and technological wear. The current condition of water supply and sewage systems and facilities frequently means a hidden source of serious danger for normal life support and ecological safety of cities and towns. The article reveals an obtained experience and modern approaches for reconstruction of waste water and sludge treatment plants that proved their efficiency even if applied in limited conditions such as area limits, investments limits. The main directions of reconstruction: overhaul repair and partial modernization of existing facilities on the basis of initial project; - restoration and modernization of existing systems on the basis on the current documents and their current condition; upgrade of waste water treatment plants (WWTPs performance on the basis of modern technologies and methods; reconstruction of sewage systems and facilities and treatment quality improvement.
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Makisha, Nikolay; Gogina, Elena
2017-11-01
Protection of water bodies has a strict dependence on reliable operation of engineering systems and facilities for water supply and sewage. The majority of these plants and stations has been constructed in 1970-1980's in accordance with rules and regulations of that time. So now most of them require reconstruction due to serious physical or/and technological wear. The current condition of water supply and sewage systems and facilities frequently means a hidden source of serious danger for normal life support and ecological safety of cities and towns. The article reveals an obtained experience and modern approaches for reconstruction of waste water and sludge treatment plants that proved their efficiency even if applied in limited conditions such as area limits, investments limits. The main directions of reconstruction: overhaul repair and partial modernization of existing facilities on the basis of initial project; - restoration and modernization of existing systems on the basis on the current documents and their current condition; upgrade of waste water treatment plants (WWTPs) performance on the basis of modern technologies and methods; reconstruction of sewage systems and facilities and treatment quality improvement.
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Graft infections after surgical aortic reconstructions
Berger, P.
2015-01-01
Prosthetic vascular grafts are frequently used to reconstruct (part) of the aorta. Every surgical procedure caries a certain risk for infection and when a prosthetic aortic graft is implanted, this may lead to an aortic graft infection (AGI). Endovascular techniques have gradually replaced open surgical reconstructions as first line of treatment for aorto-iliac diseases. Nowadays, open reconstructions are primarily reserved for patients unsuitable for endovascular reconstructions or for redo ...
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REGEN: Ancestral Genome Reconstruction for Bacteria
Yang, Kuan; Heath, Lenwood S.; Setubal, João C.
2012-01-01
Ancestral genome reconstruction can be understood as a phylogenetic study with more details than a traditional phylogenetic tree reconstruction. We present a new computational system called REGEN for ancestral bacterial genome reconstruction at both the gene and replicon levels. REGEN reconstructs gene content, contiguous gene runs, and replicon structure for each ancestral genome. Along each branch of the phylogenetic tree, REGEN infers evolutionary events, including gene creation and deleti...
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Craniofacial Reconstruction Evaluation by Geodesic Network
Zhao, Junli; Liu, Cuiting; Wu, Zhongke; Duan, Fuqing; Wang, Kang; Jia, Taorui; Liu, Quansheng
2014-01-01
Craniofacial reconstruction is to estimate an individual’s face model from its skull. It has a widespread application in forensic medicine, archeology, medical cosmetic surgery, and so forth. However, little attention is paid to the evaluation of craniofacial reconstruction. This paper proposes an objective method to evaluate globally and locally the reconstructed craniofacial faces based on the geodesic network. Firstly, the geodesic networks of the reconstructed craniofacial face and the or...
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Reconstruction of sound source signal by analytical passive TR in the environment with airflow
Wei, Long; Li, Min; Yang, Debin; Niu, Feng; Zeng, Wu
2017-03-01
In the acoustic design of air vehicles, the time-domain signals of noise sources on the surface of air vehicles can serve as data support to reveal the noise source generation mechanism, analyze acoustic fatigue, and take measures for noise insulation and reduction. To rapidly reconstruct the time-domain sound source signals in an environment with flow, a method combining the analytical passive time reversal mirror (AP-TR) with a shear flow correction is proposed. In this method, the negative influence of flow on sound wave propagation is suppressed by the shear flow correction, obtaining the corrected acoustic propagation time delay and path. Those corrected time delay and path together with the microphone array signals are then submitted to the AP-TR, reconstructing more accurate sound source signals in the environment with airflow. As an analytical method, AP-TR offers a supplementary way in 3D space to reconstruct the signal of sound source in the environment with airflow instead of the numerical TR. Experiments on the reconstruction of the sound source signals of a pair of loud speakers are conducted in an anechoic wind tunnel with subsonic airflow to validate the effectiveness and priorities of the proposed method. Moreover the comparison by theorem and experiment result between the AP-TR and the time-domain beamforming in reconstructing the sound source signal is also discussed.
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Overview of image reconstruction
International Nuclear Information System (INIS)
Marr, R.B.
1980-04-01
Image reconstruction (or computerized tomography, etc.) is any process whereby a function, f, on R/sup n/ is estimated from empirical data pertaining to its integrals, ∫f(x) dx, for some collection of hyperplanes of dimension k < n. The paper begins with background information on how image reconstruction problems have arisen in practice, and describes some of the application areas of past or current interest; these include radioastronomy, optics, radiology and nuclear medicine, electron microscopy, acoustical imaging, geophysical tomography, nondestructive testing, and NMR zeugmatography. Then the various reconstruction algorithms are discussed in five classes: summation, or simple back-projection; convolution, or filtered back-projection; Fourier and other functional transforms; orthogonal function series expansion; and iterative methods. Certain more technical mathematical aspects of image reconstruction are considered from the standpoint of uniqueness, consistency, and stability of solution. The paper concludes by presenting certain open problems. 73 references
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Fast GPU-based Monte Carlo code for SPECT/CT reconstructions generates improved 177Lu images.
Rydén, T; Heydorn Lagerlöf, J; Hemmingsson, J; Marin, I; Svensson, J; Båth, M; Gjertsson, P; Bernhardt, P
2018-01-04
clearly improved with MC-based OSEM reconstruction, e.g., the activity recovery was 88% for the largest sphere, while it was 66% for AC-OSEM and 79% for RRC-OSEM. The GPU-based MC code generated an MC-based SPECT/CT reconstruction within a few minutes, and reconstructed patient images of 177 Lu-DOTATATE treatments revealed clearly improved resolution and contrast.
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Virtual 3-D Facial Reconstruction
Directory of Open Access Journals (Sweden)
Martin Paul Evison
2000-06-01
Full Text Available Facial reconstructions in archaeology allow empathy with people who lived in the past and enjoy considerable popularity with the public. It is a common misconception that facial reconstruction will produce an exact likeness; a resemblance is the best that can be hoped for. Research at Sheffield University is aimed at the development of a computer system for facial reconstruction that will be accurate, rapid, repeatable, accessible and flexible. This research is described and prototypical 3-D facial reconstructions are presented. Interpolation models simulating obesity, ageing and ethnic affiliation are also described. Some strengths and weaknesses in the models, and their potential for application in archaeology are discussed.
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Notohamiprodjo, S; Deak, Z; Meurer, F; Maertz, F; Mueck, F G; Geyer, L L; Wirth, S
2015-01-01
The purpose of this study was to compare cranial CT (CCT) image quality (IQ) of the MBIR algorithm with standard iterative reconstruction (ASiR). In this institutional review board (IRB)-approved study, raw data sets of 100 unenhanced CCT examinations (120 kV, 50-260 mAs, 20 mm collimation, 0.984 pitch) were reconstructed with both ASiR and MBIR. Signal-to-noise (SNR) and contrast-to-noise (CNR) were calculated from attenuation values measured in caudate nucleus, frontal white matter, anterior ventricle horn, fourth ventricle, and pons. Two radiologists, who were blinded to the reconstruction algorithms, evaluated anonymized multiplanar reformations of 2.5 mm with respect to depiction of different parenchymal structures and impact of artefacts on IQ with a five-point scale (0: unacceptable, 1: less than average, 2: average, 3: above average, 4: excellent). MBIR decreased artefacts more effectively than ASiR (p ASiR was 2 (p ASiR (p ASiR. As CCT is an examination that is frequently required, the use of MBIR may allow for substantial reduction of radiation exposure caused by medical diagnostics. • Model-Based iterative reconstruction (MBIR) effectively decreased artefacts in cranial CT. • MBIR reconstructed images were rated with significantly higher scores for image quality. • Model-Based iterative reconstruction may allow reduced-dose diagnostic examination protocols.
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REGEN: Ancestral Genome Reconstruction for Bacteria.
Yang, Kuan; Heath, Lenwood S; Setubal, João C
2012-07-18
Ancestral genome reconstruction can be understood as a phylogenetic study with more details than a traditional phylogenetic tree reconstruction. We present a new computational system called REGEN for ancestral bacterial genome reconstruction at both the gene and replicon levels. REGEN reconstructs gene content, contiguous gene runs, and replicon structure for each ancestral genome. Along each branch of the phylogenetic tree, REGEN infers evolutionary events, including gene creation and deletion and replicon fission and fusion. The reconstruction can be performed by either a maximum parsimony or a maximum likelihood method. Gene content reconstruction is based on the concept of neighboring gene pairs. REGEN was designed to be used with any set of genomes that are sufficiently related, which will usually be the case for bacteria within the same taxonomic order. We evaluated REGEN using simulated genomes and genomes in the Rhizobiales order.
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Effect of Low-Dose MDCT and Iterative Reconstruction on Trabecular Bone Microstructure Assessment.
Kopp, Felix K; Holzapfel, Konstantin; Baum, Thomas; Nasirudin, Radin A; Mei, Kai; Garcia, Eduardo G; Burgkart, Rainer; Rummeny, Ernst J; Kirschke, Jan S; Noël, Peter B
2016-01-01
We investigated the effects of low-dose multi detector computed tomography (MDCT) in combination with statistical iterative reconstruction algorithms on trabecular bone microstructure parameters. Twelve donated vertebrae were scanned with the routine radiation exposure used in our department (standard-dose) and a low-dose protocol. Reconstructions were performed with filtered backprojection (FBP) and maximum-likelihood based statistical iterative reconstruction (SIR). Trabecular bone microstructure parameters were assessed and statistically compared for each reconstruction. Moreover, fracture loads of the vertebrae were biomechanically determined and correlated to the assessed microstructure parameters. Trabecular bone microstructure parameters based on low-dose MDCT and SIR significantly correlated with vertebral bone strength. There was no significant difference between microstructure parameters calculated on low-dose SIR and standard-dose FBP images. However, the results revealed a strong dependency on the regularization strength applied during SIR. It was observed that stronger regularization might corrupt the microstructure analysis, because the trabecular structure is a very small detail that might get lost during the regularization process. As a consequence, the introduction of SIR for trabecular bone microstructure analysis requires a specific optimization of the regularization parameters. Moreover, in comparison to other approaches, superior noise-resolution trade-offs can be found with the proposed methods.
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Qu, Xiao-Jian; Jin, Jian-Jun; Chaw, Shu-Miaw; Li, De-Zhu; Yi, Ting-Shuang
2017-01-25
Long-branch attraction (LBA) is a major obstacle in phylogenetic reconstruction. The phylogenetic relationships among Juniperus (J), Cupressus (C) and the Hesperocyparis-Callitropsis-Xanthocyparis (HCX) subclades of Cupressoideae are controversial. Our initial analyses of plastid protein-coding gene matrix revealed both J and C with much longer stem branches than those of HCX, so their sister relationships may be attributed to LBA. We used multiple measures including data filtering and modifying, evolutionary model selection and coalescent phylogenetic reconstruction to alleviate the LBA artifact. Data filtering by strictly removing unreliable aligned regions and removing substitution saturation genes and rapidly evolving sites could significantly reduce branch lengths of subclades J and C and recovered a relationship of J (C, HCX). In addition, using coalescent phylogenetic reconstruction could elucidate the LBA artifact and recovered J (C, HCX). However, some valid methods for other taxa were inefficient in alleviating the LBA artifact in J-C-HCX. Different strategies should be carefully considered and justified to reduce LBA in phylogenetic reconstruction of different groups. Three subclades of J-C-HCX were estimated to have experienced ancient rapid divergence within a short period, which could be another major obstacle in resolving relationships. Furthermore, our plastid phylogenomic analyses fully resolved the intergeneric relationships of Cupressoideae.
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Chen, Feng; Yuan, Yujiang; Zhang, Tongwen; Shang, Huaming
2016-03-01
Based on the significant positive correlations between the regional tree-ring width chronology and local climate data, the total precipitation of the previous July to the current June was reconstructed since AD 1760 for the northwestern Chinese Altay. The reconstruction model accounts for 40.7 % of the actual precipitation variance during the calibration period from 1959 to 2013. Wet conditions prevailed during the periods 1764-1777, 1784-1791, 1795-1805, 1829-1835, 1838-1846, 1850-1862, 1867-1872, 1907-1916, 1926-1931, 1935-1943, 1956-1961, 1968-1973, 1984-1997, and 2002-2006. Dry episodes occurred during 1760-1763, 1778-1783, 1792-1794, 1806-1828, 1836-1837, 1847-1849, 1863-1866, 1873-1906, 1917-1925, 1932-1934, 1944-1955, 1962-1967, 1974-1983, 1998-2001, and 2007-2012. The spectral analysis of the precipitation reconstruction shows the existence of some cycles (15.3, 4.5, 3.1, 2.7, and 2.1 years). The significant correlations with the gridded precipitation dataset revealed that the precipitation reconstruction represents the precipitation variation for a large area of the northern part of inner Asia. A comparison with the precipitation reconstruction from the southern Chinese Altay shows the high level of confidence for the precipitation reconstruction for the northwestern Chinese Altay. Precipitation variation of the northwestern Chinese Altay is positively correlated with sea surface temperatures in tropical oceans, suggesting a possible linkage of the precipitation variation of the northwestern Chinese Altay to the El Niño-Southern Oscillation (ENSO) and the North Atlantic Oscillation (NAO). The synoptic climatology analysis reveals that there is the relationship between anomalous atmospheric circulation and extreme climate events in the northwestern Chinese Altay.
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Institute of Scientific and Technical Information of China (English)
RONG Yan-shu; TU Qi-pu
2005-01-01
It is important and necessary to get a much longer precipitation series in order to research features of drought/flood and climate change.Based on dryness and wetness grades series of 18 stations in Northern China of 533 years from 1470 to 2002, the Moving Cumulative Frequency Method (MCFM) was developed, moving average precipitation series from 1499 to 2002 were reconstructed by testing three kinds of average precipitation, and the features of climate change and dry and wet periods were researched by using reconstructed precipitation series in the present paper.The results showed that there were good relationship between the reconstructed precipitation series and the observation precipitation series since 1954 and their relative root-mean-square error were below 1.89%, that the relation between reconstructed series and the dryness and wetness grades series were nonlinear and this nonlinear relation implied that reconstructed series were reliable and could became foundation data for researching evolution of the drought and flood.Analysis of climate change upon reconstructed precipitation series revealed that although drought intensity of recent dry period from middle 1970s of 20th century until early 21st century was not the strongest in historical climate of Northern China, intensity and duration of wet period was a great deal decreasing and shortening respectively, climate evolve to aridification situation in Northern China.
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Optimization of PET image quality by means of 3D data acquisition and iterative image reconstruction
International Nuclear Information System (INIS)
Doll, J.; Zaers, J.; Trojan, H.; Bellemann, M.E.; Adam, L.E.; Haberkorn, U.; Brix, G.
1998-01-01
The experiments were performed at the latest-generation whole-body PET system ECAT EXACT HR + . For 2D data acquisition, a collimator of thin tungsten septa was positioned in the field-of-view. Prior to image reconstruction, the measured 3D data were sorted into 2D sinograms by using the Fourier rebinning (FORE) algorithm developed by M. Defrise. The standard filtered backprojection (FBP) method and an optimized ML/EM algorithm with overrelaxation for accelerated convergence were employed for image reconstruction. The spatial resolution of both methods as well as the convergence and noise properties of the ML/EM algorithm were studied in phantom measurements. Furthermore, patient data were acquired in the 2D mode as well as in the 3D mode and reconstructed with both techniques. At the same spatial resolution, the ML/EM-reconstructed images showed fewer and less prominent artefacts than the FBP-reconstructed images. The resulting improved detail conspicuously was achieved for the data acquired in the 2D mode as well as in the 3D mode. The best image quality was obtained by iterative 2D reconstruction of 3D data sets which were previously rebinned into 2D sinograms with help of the FORE algorithm. The phantom measurements revealed that 50 iteration steps with the otpimized ML/EM algorithm were sufficient to keep the relative quantitation error below 5%. (orig./MG) [de
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REGEN: Ancestral Genome Reconstruction for Bacteria
Directory of Open Access Journals (Sweden)
João C. Setubal
2012-07-01
Full Text Available Ancestral genome reconstruction can be understood as a phylogenetic study with more details than a traditional phylogenetic tree reconstruction. We present a new computational system called REGEN for ancestral bacterial genome reconstruction at both the gene and replicon levels. REGEN reconstructs gene content, contiguous gene runs, and replicon structure for each ancestral genome. Along each branch of the phylogenetic tree, REGEN infers evolutionary events, including gene creation and deletion and replicon fission and fusion. The reconstruction can be performed by either a maximum parsimony or a maximum likelihood method. Gene content reconstruction is based on the concept of neighboring gene pairs. REGEN was designed to be used with any set of genomes that are sufficiently related, which will usually be the case for bacteria within the same taxonomic order. We evaluated REGEN using simulated genomes and genomes in the Rhizobiales order.
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Computer Based Road Accident Reconstruction Experiences
Directory of Open Access Journals (Sweden)
Milan Batista
2005-03-01
Full Text Available Since road accident analyses and reconstructions are increasinglybased on specific computer software for simulationof vehicle d1iving dynamics and collision dynamics, and forsimulation of a set of trial runs from which the model that bestdescribes a real event can be selected, the paper presents anoverview of some computer software and methods available toaccident reconstruction experts. Besides being time-saving,when properly used such computer software can provide moreauthentic and more trustworthy accident reconstruction, thereforepractical experiences while using computer software toolsfor road accident reconstruction obtained in the TransportSafety Laboratory at the Faculty for Maritime Studies andTransport of the University of Ljubljana are presented and discussed.This paper addresses also software technology for extractingmaximum information from the accident photo-documentationto support accident reconstruction based on the simulationsoftware, as well as the field work of reconstruction expertsor police on the road accident scene defined by this technology.
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Ash, Ivan K.
2009-01-01
Hindsight bias has been shown to be a pervasive and potentially harmful decision-making bias. A review of 4 competing cognitive reconstruction theories of hindsight bias revealed conflicting predictions about the role and effect of expectation or surprise in retrospective judgment formation. Two experiments tested these predictions examining the…
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Roerdink, J.B.T.M.; Westenberg, M.A
1998-01-01
We consider the parallelization of two standard 2D reconstruction algorithms, filtered backprojection and direct Fourier reconstruction, using the data-parallel programming style. The algorithms are implemented on a Connection Machine CM-5 with 16 processors and a peak performance of 2 Gflop/s.
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Vertex Reconstruction in ATLAS Run II
Zhang, Matt; The ATLAS collaboration
2016-01-01
Vertex reconstruction is the process of taking reconstructed tracks and using them to determine the locations of proton collisions. In this poster we present the performance of our current vertex reconstruction algorithm, and look at investigations into potential improvements from a new seed finding method.
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Cytotoxicity difference of 316L stainless steel and titanium reconstruction plate
Ni Putu Mira Sumarta; Coen Pramono Danudiningrat; Ester Arijani Rachmat; Pratiwi Soesilawati
2011-01-01
Background: Pure titanium is the most biocompatible material today and used as a gold standard for metallic implants. However, stainless steel is still being used as implants because of its strength, ductility, lower price, corrosion resistant and biocompatibility. Purpose: This study was done to revealed the cytotoxicity difference between reconstruction plate made of 316L stainless steel and of commercially pure (CP) titanium in baby hamster kidney-21 (BHK-21) fibroblast culture through MTT...
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International Nuclear Information System (INIS)
Wybranski, Christian; Eberhardt, Benjamin; Fischbach, Katharina; Fischbach, Frank; Walke, Mathias; Hass, Peter; Röhl, Friedrich-Wilhelm; Kosiek, Ortrud; Kaiser, Mandy; Pech, Maciej; Lüdemann, Lutz; Ricke, Jens
2015-01-01
Background and purpose: To evaluate the reconstruction accuracy of brachytherapy (BT) applicators tips in vitro and in vivo in MRI-guided 192 Ir-high-dose-rate (HDR)-BT of inoperable liver tumors. Materials and methods: Reconstruction accuracy of plastic BT applicators, visualized by nitinol inserts, was assessed in MRI phantom measurements and in MRI 192 Ir-HDR-BT treatment planning datasets of 45 patients employing CT co-registration and vector decomposition. Conspicuity, short-term dislocation, and reconstruction errors were assessed in the clinical data. The clinical effect of applicator reconstruction accuracy was determined in follow-up MRI data. Results: Applicator reconstruction accuracy was 1.6 ± 0.5 mm in the phantom measurements. In the clinical MRI datasets applicator conspicuity was rated good/optimal in ⩾72% of cases. 16/129 applicators showed not time dependent deviation in between MRI/CT acquisition (p > 0.1). Reconstruction accuracy was 5.5 ± 2.8 mm, and the average image co-registration error was 3.1 ± 0.9 mm. Vector decomposition revealed no preferred direction of reconstruction errors. In the follow-up data deviation of planned dose distribution and irradiation effect was 6.9 ± 3.3 mm matching the mean co-registration error (6.5 ± 2.5 mm; p > 0.1). Conclusion: Applicator reconstruction accuracy in vitro conforms to AAPM TG 56 standard. Nitinol-inserts are feasible for applicator visualization and yield good conspicuity in MRI treatment planning data. No preferred direction of reconstruction errors were found in vivo
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Photoacoustic image reconstruction via deep learning
Antholzer, Stephan; Haltmeier, Markus; Nuster, Robert; Schwab, Johannes
2018-02-01
Applying standard algorithms to sparse data problems in photoacoustic tomography (PAT) yields low-quality images containing severe under-sampling artifacts. To some extent, these artifacts can be reduced by iterative image reconstruction algorithms which allow to include prior knowledge such as smoothness, total variation (TV) or sparsity constraints. These algorithms tend to be time consuming as the forward and adjoint problems have to be solved repeatedly. Further, iterative algorithms have additional drawbacks. For example, the reconstruction quality strongly depends on a-priori model assumptions about the objects to be recovered, which are often not strictly satisfied in practical applications. To overcome these issues, in this paper, we develop direct and efficient reconstruction algorithms based on deep learning. As opposed to iterative algorithms, we apply a convolutional neural network, whose parameters are trained before the reconstruction process based on a set of training data. For actual image reconstruction, a single evaluation of the trained network yields the desired result. Our presented numerical results (using two different network architectures) demonstrate that the proposed deep learning approach reconstructs images with a quality comparable to state of the art iterative reconstruction methods.
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Beard reconstruction: A surgical algorithm.
Ninkovic, M; Heidekrueger, P I; Ehrl, D; von Spiegel, F; Broer, P N
2016-06-01
Facial defects with loss of hair-bearing regions can be caused by trauma, infection, tumor excision, or burn injury. The presented analysis evaluates a series of different surgical approaches with a focus on male beard reconstruction, emphasizing the role of tissue expansion of regional and free flaps. Locoregional and free flap reconstructions were performed in 11 male patients with 14 facial defects affecting the hair-bearing bucco-mandibular or perioral region. In order to minimize donor-site morbidity and obtain large amounts of thin, pliable, hair-bearing tissue, pre-expansion was performed in five of 14 patients. Eight of 14 patients were treated with locoregional flap reconstructions and six with free flap reconstructions. Algorithms regarding pre- and intraoperative decision making are discussed and long-term (mean follow-up 1.5 years) results analyzed. Major complications, including tissue expander infection with the need for removal or exchange, partial or full flap loss, occurred in 0% (0/8) of patients with locoregional flaps and in 17% (1/6) of patients undergoing free flap reconstructions. Secondary refinement surgery was performed in 25% (2/8) of locoregional flaps and in 67% (4/6) of free flaps. Both locoregional and distant tissue transfers play a role in beard reconstruction, while pre-expansion remains an invaluable tool. Paying attention to the presented principles and considering the significance of aesthetic facial subunits, range of motion, aesthetics, and patient satisfaction were improved long term in all our patients while minimizing donor-site morbidity. Copyright © 2016 British Association of Plastic, Reconstructive and Aesthetic Surgeons. Published by Elsevier Ltd. All rights reserved.
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Forensic Facial Reconstruction: The Final Frontier.
Gupta, Sonia; Gupta, Vineeta; Vij, Hitesh; Vij, Ruchieka; Tyagi, Nutan
2015-09-01
Forensic facial reconstruction can be used to identify unknown human remains when other techniques fail. Through this article, we attempt to review the different methods of facial reconstruction reported in literature. There are several techniques of doing facial reconstruction, which vary from two dimensional drawings to three dimensional clay models. With the advancement in 3D technology, a rapid, efficient and cost effective computerized 3D forensic facial reconstruction method has been developed which has brought down the degree of error previously encountered. There are several methods of manual facial reconstruction but the combination Manchester method has been reported to be the best and most accurate method for the positive recognition of an individual. Recognition allows the involved government agencies to make a list of suspected victims'. This list can then be narrowed down and a positive identification may be given by the more conventional method of forensic medicine. Facial reconstruction allows visual identification by the individual's family and associates to become easy and more definite.
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Alternative reconstruction after pancreaticoduodenectomy
Directory of Open Access Journals (Sweden)
Cooperman Avram M
2008-01-01
Full Text Available Abstract Background Pancreaticoduodenectomy is the procedure of choice for tumors of the head of the pancreas and periampulla. Despite advances in surgical technique and postoperative care, the procedure continues to carry a high morbidity rate. One of the most common morbidities is delayed gastric emptying with rates of 15%–40%. Following two prolonged cases of delayed gastric emptying, we altered our reconstruction to avoid this complication altogether. Subsequently, our patients underwent a classic pancreaticoduodenectomy with an undivided Roux-en-Y technique for reconstruction. Methods We reviewed the charts of our last 13 Whipple procedures evaluating them for complications, specifically delayed gastric emptying. We compared the outcomes of those patients to a control group of 15 patients who underwent the Whipple procedure with standard reconstruction. Results No instances of delayed gastric emptying occurred in patients who underwent an undivided Roux-en-Y technique for reconstruction. There was 1 wound infection (8%, 1 instance of pneumonia (8%, and 1 instance of bleeding from the gastrojejunal staple line (8%. There was no operative mortality. Conclusion Use of the undivided Roux-en-Y technique for reconstruction following the Whipple procedure may decrease the incidence of delayed gastric emptying. In addition, it has the added benefit of eliminating bile reflux gastritis. Future randomized control trials are recommended to further evaluate the efficacy of the procedure.
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Popa, Ionel; Crǎciunescu, Vasile; Candrea, Bogdan; Timár, Gábor
2010-05-01
Austrian and Romanian forest surveyors, to correctly georeference the maps. A case study, demonstrating the usefulness of such old cartographic informations in understanding the forest landscape evolution is also included. The georeferenced map sheets provide an excellent basis of the paleo-environmental researches. Assessing the changes of the forest cover ratio is important for the analysis of the recent flash flood events at the eastern slopes of the Carpathian Mts.
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Study of DNA reconstruction enzymes
Energy Technology Data Exchange (ETDEWEB)
Sekiguchi, M [Kyushu Univ., Fukuoka (Japan). Faculty of Science
1976-12-01
Description was made of the characteristics and mechanism of 3 reconstructive enzymes which received from M. luteus or E. coli or T4, and of which natures were clarified as reconstructive enzymes of DNA irradiated with ultraviolet rays. As characteristics, the site of breaking, reaction, molecular weight, electric charge in the neutrality and a specific adhesion to DNA irradiated with ultraviolet rays were mentioned. As to mutant of ultraviolet ray sensitivity, hereditary control mechanism of removal and reconstruction by endo-nuclease activation was described, and suggestion was referred to removal and reconstruction of cells of xedoderma pigmentosum which is a hereditary disease of human. Description was also made as to the mechanism of exonuclease activation which separates dimer selectively from irradiated DNA.
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Takase, K; Yamamoto, K
2016-09-01
Surgical treatment is recommended for type 5 acromioclavicular joint dislocation on Rockwood's classification. We believe that anatomic repair of the coracoclavicular ligaments best restores the function of the acromioclavicular joint. We attempted to correctly reconstruct the anatomy of the coracoclavicular ligaments under arthroscopy, and describe the minimally invasive arthroscopic procedure. There were 22 patients; mean age at surgery, 38.1 years. Mean time to surgery was 13.2 days. Mean follow-up was 3 years 2 months. The palmaris longus tendon was excised from the ipsilateral side to replace the conoid ligament, while artificial ligament was used for reconstructing the trapezoid ligament. Both ligament reconstructions were performed arthroscopically. No temporary fixation of the acromioclavicular joint was performed. On postoperative radiographic evaluation, 4 patients showed subluxation and 2 showed dislocation of the acromioclavicular joint; the other 16 patients had maintained reduction at the final consultation. MR images 1year after surgery clearly revealed the reconstructed ligaments in 19 patients. Only 1 patient showed osteoarthritis of the acromioclavicular joint. Although it requires resection of the ipsilateral palmaris longus for grafting, we believe that anatomic reconstruction of both coracoclavicular ligaments best restores the function of the acromioclavicular joint. 4. Copyright © 2016 Elsevier Masson SAS. All rights reserved.
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International Nuclear Information System (INIS)
Yeong, C.L.; Torquato, S.
1998-01-01
We formulate a procedure to reconstruct the structure of general random heterogeneous media from limited morphological information by extending the methodology of Rintoul and Torquato [J. Colloid Interface Sci. 186, 467 (1997)] developed for dispersions. The procedure has the advantages that it is simple to implement and generally applicable to multidimensional, multiphase, and anisotropic structures. Furthermore, an extremely useful feature is that it can incorporate any type and number of correlation functions in order to provide as much morphological information as is necessary for accurate reconstruction. We consider a variety of one- and two-dimensional reconstructions, including periodic and random arrays of rods, various distribution of disks, Debye random media, and a Fontainebleau sandstone sample. We also use our algorithm to construct heterogeneous media from specified hypothetical correlation functions, including an exponentially damped, oscillating function as well as physically unrealizable ones. copyright 1998 The American Physical Society
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Industrial dynamic tomographic reconstruction
International Nuclear Information System (INIS)
Oliveira, Eric Ferreira de
2016-01-01
The state of the art methods applied to industrial processes is currently based on the principles of classical tomographic reconstructions developed for tomographic patterns of static distributions, or is limited to cases of low variability of the density distribution function of the tomographed object. Noise and motion artifacts are the main problems caused by a mismatch in the data from views acquired in different instants. All of these add to the known fact that using a limited amount of data can result in the presence of noise, artifacts and some inconsistencies with the distribution under study. One of the objectives of the present work is to discuss the difficulties that arise from implementing reconstruction algorithms in dynamic tomography that were originally developed for static distributions. Another objective is to propose solutions that aim at reducing a temporal type of information loss caused by employing regular acquisition systems to dynamic processes. With respect to dynamic image reconstruction it was conducted a comparison between different static reconstruction methods, like MART and FBP, when used for dynamic scenarios. This comparison was based on a MCNPx simulation as well as an analytical setup of an aluminum cylinder that moves along the section of a riser during the process of acquisition, and also based on cross section images from CFD techniques. As for the adaptation of current tomographic acquisition systems for dynamic processes, this work established a sequence of tomographic views in a just-in-time fashion for visualization purposes, a form of visually disposing density information as soon as it becomes amenable to image reconstruction. A third contribution was to take advantage of the triple color channel necessary to display colored images in most displays, so that, by appropriately scaling the acquired values of each view in the linear system of the reconstruction, it was possible to imprint a temporal trace into the regularly
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Lupo, Karen D; Schmitt, Dave N; Kiahtipes, Christopher A; Ndanga, Jean-Paul; Young, D Craig; Simiti, Bernard
2015-01-01
An ongoing question in paleoenvironmental reconstructions of the central African rainforest concerns the role that prehistoric metallurgy played in shaping forest vegetation. Here we report evidence of intensive iron-ore mining and smelting in forested regions of the northern Congo Basin dating to the late Holocene. Volumetric estimates on extracted iron-ore and associated slag mounds from prehistoric sites in the southern Central African Republic suggest large-scale iron production on par with other archaeological and historically-known iron fabrication areas. These data document the first evidence of intensive iron mining and production spanning approximately 90 years prior to colonial occupation (circa AD 1889) and during an interval of time that is poorly represented in the archaeological record. Additional site areas pre-dating these remains by 3-4 centuries reflect an earlier period of iron production on a smaller scale. Microbotanical evidence from a sediment core collected from an adjacent riparian trap shows a reduction in shade-demanding trees in concert with an increase in light-demanding species spanning the time interval associated with iron intensification. This shift occurs during the same time interval when many portions of the Central African witnessed forest transgressions associated with a return to moister and more humid conditions beginning 500-100 years ago. Although data presented here do not demonstrate that iron smelting activities caused widespread vegetation change in Central Africa, we argue that intense mining and smelting can have localized and potentially regional impacts on vegetation communities. These data further demonstrate the high value of pairing archeological and paleoenvironmental analyses to reconstruct regional-scale forest histories.
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Colon dissection: a new three-dimensional reconstruction tool for computed tomography colonography
International Nuclear Information System (INIS)
Roettgen, R.; Fischbach, F.; Plotkin, M.; Herzog, H.; Freund, T.; Schroeder, R. J.; Felix, R.
2005-01-01
Purpose: To improve the sensitivity of computed tomography (CT) colonography in the detection of polyps by comparing the 3D reconstruction tool 'colon dissection' and endoluminal view (virtual colonoscopy) with axial 2D reconstructions. Material and Methods: Forty-eight patients (22 M, 26 F, mean age 57±21) were studied after intra-anal air insufflation in the supine and prone positions using a 16-slice helical CT (16x0.625 mm, pitch 1.7; detector rotation time 0.5 s; 160 mAs und 120 kV) and conventional colonoscopy. Two radiologists blinded to the results of the conventional colonoscopy analyzed the 3D reconstruction in virtual-endoscopy mode, in colon-dissection mode, and axial 2D slices. Results: Conventional colonoscopy revealed a total of 35 polyps in 15 patients; 33 polyps were disclosed by CT methods. Sensitivity and specificity for detecting colon polyps were 94% and 94%, respectively, when using the 'colon dissection', 89% and 94% when using 'virtual endoscopy', and 62% and 100% when using axial 2D reconstruction. Sensitivity in relation to the diameter of colon polyps with 'colon dissection', 'virtual colonoscopy', and axial 2D-slices was: polyps with a diameter >5.0 mm, 100%, 100%, and 71%, respectively; polyps with a diameter of between 3 and 4.9 mm, 92%, 85%, and 46%; and polyps with a diameter <3 mm, 89%, 78%, and 56%. The difference between 'virtual endoscopy' and 'colon dissection' in diagnosing polyps up to 4.9 mm in diameter was statistically significant. Conclusion: 3D reconstruction software 'colon dissection' improves sensitivity of CT colonography compared with the endoluminal view
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[Pelvic reconstructions after bone tumor resection].
Anract, Philippe; Biau, David; Babinet, Antoine; Tomeno, Bernard
2014-02-01
The three more frequent primitive malignant bone tumour which concerned the iliac bone are chondrosarcoma, following Ewing sarcoma and osteosarcoma. Wide resection remains the most important part of the treatment associated with chemotherapy for osteosarcoma and the Ewing sarcoma. Iliac wing resections and obdurate ring don't required reconstruction. However, acetabular resections and iliac wing resection with disruption of the pelvic ring required reconstruction to provide acceptable functional result. Acetabular reconstruction remains high technical demanding challenge. After isolated acetabular resection or associated to obdurate ring, our usual method of reconstruction is homolateral proximal femoral autograft and total hip prosthesis but it is possible to also used : saddle prosthesis, Mac Minn prosthesis with auto or allograft, modular prosthesis or custom made prosthesis, massive allograft with or without prosthesis and femoro-ilac arthrodesis. After resection of the iliac wing plus acetabulum, reconstruction can be performed by femoro-obturatrice and femora-sacral arthrodesis, homolateral proximal femoral autograft and prosthesis, femoral medialisation, massive allograft and massive allograft. Carcinological results are lesser than resection for distal limb tumor, local recurrence rate range 17 to 45%. Functional results after Iliac wing and obdurate ring are good. However, acetabular reconstruction provide uncertain functional results. The lesser results arrive after hemipelvic or acetabular and iliac wing resection-reconstruction, especially when gluteus muscles were also resected. The most favourable results arrive after isolated acetabular or acetabular plus obturateur ring resection-reconstruction.
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Lin, K. H. E.; Wang, P. K.; Lee, S. Y.; Liao, Y. C.; Fan, I. C.; Liao, H. M.
2017-12-01
The Little ice Age (LIA) is one of the most prominent epochs in paleoclimate reconstruction of the Common Era. While the signals of LIA were generally discovered across hemispheres, wide arrays of regional variability were found, and the reconstructed anomalies were sometimes inconsistent across studies by using various proxy data or historical records. This inconsistency is mainly attributed to limited data coverage at fine resolution that can assist high-resolution climate reconstruction in the continuous spatiotemporal trends. Qing dynasty (1644-1911 CE) of China existed in the coldest period of LIA. Owing to a long-standing tradition that acquired local officials to record odds and social or meteorological events, thousands of local chronicles were left. Zhang eds. (2004) took two decades to compile all these meteorological records in a compendium, for which we then digitized and coded all records into our REACHS database system for reconstructing climate. There were in total 1,435 points (sites) in our database for over 80,000 events in the period of time. After implementing two-rounds coding check for data quality control (accuracy rate 87.2%), multiple indexes were retrieved for reconstructing annually and seasonally resolved temperature and precipitation series for North, Central, and South China. The reconstruction methods include frequency count and grading, with usage of multiple regression models to test sensitivity and to calculate correlations among several reconstructed series. Validation was also conducted through comparison with instrumental data and with other reconstructed series in previous studies. Major research results reveal interannual (3-5 years), decadal (8-12 years), and interdecadal (≈30 years) variabilities with strong regional expressions across East China. Cooling effect was not homogenously distributed in space and time. Flood and drought conditions frequently repeated but the spatiotemporal pattern was variant, indicating likely
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Analytical algorithm for the generation of polygonal projection data for tomographic reconstruction
International Nuclear Information System (INIS)
Davis, G.R.
1996-01-01
Tomographic reconstruction algorithms and filters can be tested using a mathematical phantom, that is, a computer program which takes numerical data as its input and outputs derived projection data. The input data is usually in the form of pixel ''densities'' over a regular grid, or position and dimensions of simple, geometrical objects. The former technique allows a greater variety of objects to be simulated, but is less suitable in the case when very small (relative to the ray-spacing) features are to be simulated. The second technique is normally used to simulate biological specimens, typically a human skull, modelled as a number of ellipses. This is not suitable for simulating non-biological specimens with features such as straight edges and fine cracks. We have therefore devised an algorithm for simulating objects described as a series of polygons. These polygons, or parts of them, may be smaller than the ray-spacing and there is no limit, except that imposed by computing resources, on the complexity, number or superposition of polygons. A simple test of such a phantom, reconstructed using the filtered back-projection method, revealed reconstruction artefacts not normally seen with ''biological'' phantoms. (orig.)
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The EQUAL-ESTRO audit on geometric reconstruction techniques in brachytherapy
International Nuclear Information System (INIS)
Roue, Amelie; Ferreira, Ivaldo H.; Dam, Jan Van; Svensson, Hans; Venselaar, Jack L.M.
2006-01-01
Background and purpose: A geometric check procedure of the reconstruction techniques used in brachytherapy treatment planning systems was developed by the EQUAL (European Quality Laboratory) Laboratory in the framework of the ESTRO's (European Society for Therapeutic Radiology and Oncology) project 'ESQUIRE' (Education Science and QUality assurance In Radiotherapy in Europe [Baumann M, Brada M. Towards equity in turbulent Europe ESTRO, European cooperation and the European Commission. Radiother Oncol 2005;75:251-2. Heeren G. The bright but ephemeral life of a rainbow. A chronical of seventeen years of intensive ESTRO-EU cooperation. Radiother Oncol 2005;75:253-7]) by the task group Braphyqs (Brachytherapy physics quality system). Patients and methods: The check is performed by using the so-called 'Baltas' phantom, mailed to the participating centres in order to check the local technique of geometric reconstruction used in dose calculation. Results: To validate the procedures, the check was first tested among the members of the Braphyqs Network. Since November 2002, the system is open to other centres. Until now 152 reconstructions have been checked. Eighty-six percent of the results were within an acceptance level after the first check. For the remaining 14%, a second check has been proposed. The results of the re-checks are in most cases within an acceptance level, except for 2% of the reconstructions. Conclusions: The geometric check is available from the EQUAL Laboratory for all the brachytherapy centres. The decrease of the deviations observed between the two checks demonstrates the importance of this kind of external audit as some errors were revealed, which were not discovered before with techniques used in clinical quality control routines
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Directory of Open Access Journals (Sweden)
A. Herrero-Hernández
2016-11-01
Full Text Available The siliclastic and carbonate deposits are interbedded in the Villadiego area (Miocene, NE Duero Basin. They have been subdivided into two high-rank depositional sequences: DDS and CDS. The sedimentary analysis of these units and the study of the microfauna content, mainly ostracods, led to the identification of lacustrine-fluvial interaction systems. The sedimentary characteristics reveal the existence of fluvial systems of gravel, flood plains and lacustrine systems that were interconnected and intimately related in north-south direction. In the sedimentological analysis, thirteen types of fluvial and lacustrine lithofacies and six genetic facies associations were recognized. The top of DDS is the result of lake level risings. The CDS shows a deepening-shallowing cycle. The ostracod micropaleontological analysis of the sediments have been studied, with the aim of reconstructing the palaeoenvironmental evolution of this area. These microfauna assemblages integrated with the analysis of the sedimentary facies allowed to conclude the existence of lakes with a water-bearing level of few tens of meters. A change in the chemical conditions of the waters, which evolved from oligohaline and carbonated to mesohaline and sulphated is concluded.
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Bioengineered human IAS reconstructs with functional and molecular properties similar to intact IAS
Singh, Jagmohan
2012-01-01
Because of its critical importance in rectoanal incontinence, we determined the feasibility to reconstruct internal anal sphincter (IAS) from human IAS smooth muscle cells (SMCs) with functional and molecular attributes similar to the intact sphincter. The reconstructs were developed using SMCs from the circular smooth muscle layer of the human IAS, grown in smooth muscle differentiation media under sterile conditions in Sylgard-coated tissue culture plates with central Sylgard posts. The basal tone in the reconstructs and its changes were recorded following 0 Ca2+, KCl, bethanechol, isoproterenol, protein kinase C (PKC) activator phorbol 12,13-dibutyrate, and Rho kinase (ROCK) and PKC inhibitors Y-27632 and Gö-6850, respectively. Western blot (WB), immunofluorescence (IF), and immunocytochemical (IC) analyses were also performed. The reconstructs developed spontaneous tone (0.68 ± 0.26 mN). Bethanechol (a muscarinic agonist) and K+ depolarization produced contraction, whereas isoproterenol (β-adrenoceptor agonist) and Y-27632 produced a concentration-dependent decrease in the tone. Maximal decrease in basal tone with Y-27632 and Gö-6850 (each 10−5 M) was 80.45 ± 3.29 and 17.76 ± 3.50%, respectively. WB data with the IAS constructs′ SMCs revealed higher levels of RhoA/ROCK, protein kinase C-potentiated inhibitor or inhibitory phosphoprotein for myosin phosphatase (CPI-17), phospho-CPI-17, MYPT1, and 20-kDa myosin light chain vs. rectal smooth muscle. WB, IF, and IC studies of original SMCs and redispersed from the reconstructs for the relative distribution of different signal transduction proteins confirmed the feasibility of reconstruction of IAS with functional properties similar to intact IAS and demonstrated the development of myogenic tone with critical dependence on RhoA/ROCK. We conclude that it is feasible to bioengineer IAS constructs using human IAS SMCs that behave like intact IAS. PMID:22790596
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Maxillary reconstruction: Current concepts and controversies
Directory of Open Access Journals (Sweden)
Subramania Iyer
2014-01-01
Full Text Available Maxillary reconstruction is still an evolving art when compared to the reconstruction of the mandible. The defects of maxilla apart from affecting the functions of the speech, swallowing and mastication also cause cosmetic disfigurement. Rehabilitation of the form and function in patients with maxillary defects is either by using an obturator prosthesis or by a surgical reconstruction. Literature is abundant with a variety of reconstructive methods. The classification systems are also varied, with no universal acceptance of any one of them. The oncologic safety of these procedures is still debated, and conclusive evidence in this regard has not emerged yet. Management of the orbit is also not yet addressed properly. Tissue engineering, that has been hyped to be one of the possible solutions for this vexing reconstructive problem, has not come out with reliable and reproducible results so far. This review article discusses the rationale and oncological safety of the reconstructing the maxillary defects, critically analyzes the classification systems, offers the different reconstructive methods and touches upon the controversies in this subject. The management of the retained and exenterated orbit associated with maxillectomy is reviewed. The surgical morbidity, complications and the recent advances in this field are also looked into. An algorithm, based on our experience, is presented.
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Maxillary reconstruction: Current concepts and controversies
Iyer, Subramania; Thankappan, Krishnakumar
2014-01-01
Maxillary reconstruction is still an evolving art when compared to the reconstruction of the mandible. The defects of maxilla apart from affecting the functions of the speech, swallowing and mastication also cause cosmetic disfigurement. Rehabilitation of the form and function in patients with maxillary defects is either by using an obturator prosthesis or by a surgical reconstruction. Literature is abundant with a variety of reconstructive methods. The classification systems are also varied, with no universal acceptance of any one of them. The oncologic safety of these procedures is still debated, and conclusive evidence in this regard has not emerged yet. Management of the orbit is also not yet addressed properly. Tissue engineering, that has been hyped to be one of the possible solutions for this vexing reconstructive problem, has not come out with reliable and reproducible results so far. This review article discusses the rationale and oncological safety of the reconstructing the maxillary defects, critically analyzes the classification systems, offers the different reconstructive methods and touches upon the controversies in this subject. The management of the retained and exenterated orbit associated with maxillectomy is reviewed. The surgical morbidity, complications and the recent advances in this field are also looked into. An algorithm, based on our experience, is presented. PMID:24987199
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Iterative reconstruction reduces abdominal CT dose
International Nuclear Information System (INIS)
Martinsen, Anne Catrine Trægde; Sæther, Hilde Kjernlie; Hol, Per Kristian; Olsen, Dag Rune; Skaane, Per
2012-01-01
Objective: In medical imaging, lowering radiation dose from computed tomography scanning, without reducing diagnostic performance is a desired achievement. Iterative image reconstruction may be one tool to achieve dose reduction. This study reports the diagnostic performance using a blending of 50% statistical iterative reconstruction (ASIR) and filtered back projection reconstruction (FBP) compared to standard FBP image reconstruction at different dose levels for liver phantom examinations. Methods: An anthropomorphic liver phantom was scanned at 250, 185, 155, 140, 120 and 100 mA s, on a 64-slice GE Lightspeed VCT scanner. All scans were reconstructed with ASIR and FBP. Four readers evaluated independently on a 5-point scale 21 images, each containing 32 test sectors. In total 672 areas were assessed. ROC analysis was used to evaluate the differences. Results: There was a difference in AUC between the 250 mA s FBP images and the 120 and 100 mA s FBP images. ASIR reconstruction gave a significantly higher diagnostic performance compared to standard reconstruction at 100 mA s. Conclusion: A blending of 50–90% ASIR and FBP may improve image quality of low dose CT examinations of the liver, and thus give a potential for reducing radiation dose.
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Image reconstruction by domain-transform manifold learning
Zhu, Bo; Liu, Jeremiah Z.; Cauley, Stephen F.; Rosen, Bruce R.; Rosen, Matthew S.
2018-03-01
Image reconstruction is essential for imaging applications across the physical and life sciences, including optical and radar systems, magnetic resonance imaging, X-ray computed tomography, positron emission tomography, ultrasound imaging and radio astronomy. During image acquisition, the sensor encodes an intermediate representation of an object in the sensor domain, which is subsequently reconstructed into an image by an inversion of the encoding function. Image reconstruction is challenging because analytic knowledge of the exact inverse transform may not exist a priori, especially in the presence of sensor non-idealities and noise. Thus, the standard reconstruction approach involves approximating the inverse function with multiple ad hoc stages in a signal processing chain, the composition of which depends on the details of each acquisition strategy, and often requires expert parameter tuning to optimize reconstruction performance. Here we present a unified framework for image reconstruction—automated transform by manifold approximation (AUTOMAP)—which recasts image reconstruction as a data-driven supervised learning task that allows a mapping between the sensor and the image domain to emerge from an appropriate corpus of training data. We implement AUTOMAP with a deep neural network and exhibit its flexibility in learning reconstruction transforms for various magnetic resonance imaging acquisition strategies, using the same network architecture and hyperparameters. We further demonstrate that manifold learning during training results in sparse representations of domain transforms along low-dimensional data manifolds, and observe superior immunity to noise and a reduction in reconstruction artefacts compared with conventional handcrafted reconstruction methods. In addition to improving the reconstruction performance of existing acquisition methodologies, we anticipate that AUTOMAP and other learned reconstruction approaches will accelerate the development
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A Reduction of the Graph Reconstruction Conjecture
Directory of Open Access Journals (Sweden)
Monikandan S.
2014-08-01
Full Text Available A graph is said to be reconstructible if it is determined up to isomor- phism from the collection of all its one-vertex deleted unlabeled subgraphs. Reconstruction Conjecture (RC asserts that all graphs on at least three vertices are reconstructible. In this paper, we prove that interval-regular graphs and some new classes of graphs are reconstructible and show that RC is true if and only if all non-geodetic and non-interval-regular blocks G with diam(G = 2 or diam(Ḡ = diam(G = 3 are reconstructible
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Directory of Open Access Journals (Sweden)
Andreas Hardy Keller
2015-12-01
Full Text Available The population genome of an uncultured bacterium assigned to the Campylobacterales (Epsilonproteobacteria was reconstructed from a metagenome dataset obtained by whole-genome shotgun pyrosequencing. Genomic DNA was extracted from a sulfate-reducing, m-xylene-mineralizing enrichment culture isolated from groundwater of a benzene-contaminated sulfidic aquifer. The identical epsilonproteobacterial phylotype has previously been detected in toluene- or benzene-mineralizing, sulfate-reducing consortia enriched from the same site. Previous stable isotope probing experiments with 13C6-labeled benzene suggested that this phylotype assimilates benzene-derived carbon in a syntrophic benzene-mineralizing consortium that uses sulfate as terminal electron acceptor. However, the type of energy metabolism and the ecophysiological function of this epsilonproteobacterium within aromatic hydrocarbon-degrading consortia and in the sulfidic aquifer are poorly understood.Annotation of the epsilonproteobacterial population genome suggests that the bacterium plays a key role in sulfur cycling as indicated by the presence of a sqr gene encoding a sulfide quinone oxidoreductase and psr genes encoding a polysulfide reductase. It may gain energy by using sulfide or hydrogen/formate as electron donors. Polysulfide, fumarate, as well as oxygen are potential electron acceptors. Auto- or mixotrophic carbon metabolism seems plausible since a complete reductive citric acid cycle was detected. Thus the bacterium can thrive in pristine groundwater as well as in hydrocarbon-contaminated aquifers. In hydrocarbon-contaminated sulfidic habitats, the epsilonproteobacterium may generate energy by coupling the oxidation of hydrogen or formate and highly abundant sulfide with the reduction of fumarate and/or polysulfide, accompanied by efficient assimilation of acetate produced during fermentation or incomplete oxidation of hydrocarbons. The highly efficient assimilation of acetate was
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Keller, Andreas H; Schleinitz, Kathleen M; Starke, Robert; Bertilsson, Stefan; Vogt, Carsten; Kleinsteuber, Sabine
2015-01-01
The population genome of an uncultured bacterium assigned to the Campylobacterales (Epsilonproteobacteria) was reconstructed from a metagenome dataset obtained by whole-genome shotgun pyrosequencing. Genomic DNA was extracted from a sulfate-reducing, m-xylene-mineralizing enrichment culture isolated from groundwater of a benzene-contaminated sulfidic aquifer. The identical epsilonproteobacterial phylotype has previously been detected in toluene- or benzene-mineralizing, sulfate-reducing consortia enriched from the same site. Previous stable isotope probing (SIP) experiments with (13)C6-labeled benzene suggested that this phylotype assimilates benzene-derived carbon in a syntrophic benzene-mineralizing consortium that uses sulfate as terminal electron acceptor. However, the type of energy metabolism and the ecophysiological function of this epsilonproteobacterium within aromatic hydrocarbon-degrading consortia and in the sulfidic aquifer are poorly understood. Annotation of the epsilonproteobacterial population genome suggests that the bacterium plays a key role in sulfur cycling as indicated by the presence of an sqr gene encoding a sulfide quinone oxidoreductase and psr genes encoding a polysulfide reductase. It may gain energy by using sulfide or hydrogen/formate as electron donors. Polysulfide, fumarate, as well as oxygen are potential electron acceptors. Auto- or mixotrophic carbon metabolism seems plausible since a complete reductive citric acid cycle was detected. Thus the bacterium can thrive in pristine groundwater as well as in hydrocarbon-contaminated aquifers. In hydrocarbon-contaminated sulfidic habitats, the epsilonproteobacterium may generate energy by coupling the oxidation of hydrogen or formate and highly abundant sulfide with the reduction of fumarate and/or polysulfide, accompanied by efficient assimilation of acetate produced during fermentation or incomplete oxidation of hydrocarbons. The highly efficient assimilation of acetate was recently
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Reconstructing Topological Graphs and Continua
Gartside, Paul; Pitz, Max F.; Suabedissen, Rolf
2015-01-01
The deck of a topological space $X$ is the set $\\mathcal{D}(X)=\\{[X \\setminus \\{x\\}] \\colon x \\in X\\}$, where $[Z]$ denotes the homeomorphism class of $Z$. A space $X$ is topologically reconstructible if whenever $\\mathcal{D}(X)=\\mathcal{D}(Y)$ then $X$ is homeomorphic to $Y$. It is shown that all metrizable compact connected spaces are reconstructible. It follows that all finite graphs, when viewed as a 1-dimensional cell-complex, are reconstructible in the topological sense, and more genera...
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Mandible reconstruction: History, state of the art and persistent problems.
Ferreira, José J; Zagalo, Carlos M; Oliveira, Marta L; Correia, André M; Reis, Ana R
2015-06-01
Mandibular reconstruction has been experiencing an amazing evolution. Several different approaches are used to reconstruct this bone and therefore have a fundamental role in the recovery of oral functions. This review aims to highlight the persistent problems associated with the approaches identified, whether bone grafts or prosthetic devices are used. A brief summary of the historical evolution of the surgical procedures is presented, as well as an insight into possible future pathways. A literature review was conducted from September to December 2012 using the PubMed database. The keyword used was "mandible reconstruction." Articles published in the last three years were included as well as the relevant references from those articles and the "historical articles" were referred. This research resulted in a monograph that this article aims to summarize. Titanium plates, bone grafts, pediculate flaps, free osteomyocutaneous flaps, rapid prototyping, and tissue engineering strategies are some of the identified possibilities. The classical approaches present considerable associated morbidity donor-site-related problems. Research that results in the development of new prosthetics devices is needed. A new prosthetic approach could minimize the identified problems and offer the patients more predictable, affordable, and comfortable solutions. This review, while affirming the evolution and the good results found with the actual approaches, emphasizes the negative aspects that still subsist. Thus, it shows that mandible reconstruction is not a closed issue. On the contrary, it remains as a research field where new findings could have a direct positive impact on patients' life quality. The identification of the persistent problems reveals the characteristics to be considered in a new prosthetic device. This could overcome the current difficulties and result in more comfortable solutions. Medical teams have the responsibility to keep patients informed about the predictable
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Delayed breast implant reconstruction
DEFF Research Database (Denmark)
Hvilsom, Gitte B.; Hölmich, Lisbet R.; Steding-Jessen, Marianne
2012-01-01
We evaluated the association between radiation therapy and severe capsular contracture or reoperation after 717 delayed breast implant reconstruction procedures (288 1- and 429 2-stage procedures) identified in the prospective database of the Danish Registry for Plastic Surgery of the Breast during...... of radiation therapy was associated with a non-significantly increased risk of reoperation after both 1-stage (HR = 1.4; 95% CI: 0.7-2.5) and 2-stage (HR = 1.6; 95% CI: 0.9-3.1) procedures. Reconstruction failure was highest (13.2%) in the 2-stage procedures with a history of radiation therapy. Breast...... reconstruction approaches other than implants should be seriously considered among women who have received radiation therapy....
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Schepers, Rutger H.; Raghoebar, Gerry M.; Vissink, Arjan; Stenekes, Martin W.; Kraeima, Joep; Roodenburg, Jan L.; Reintsema, Harry; Witjes, Max J.
Background: The purpose of this study was to analyze the accuracy of mandibular reconstruction using patient-specific computer-aided designed and computer-aided manufactured (CAD/CAM) reconstruction plates as a guide to place fibula grafts and dental implants in a one-stage procedure using
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International Nuclear Information System (INIS)
Hofmann, Christian; Sawall, Stefan; Knaup, Michael; Kachelrieß, Marc
2014-01-01
Purpose: Iterative image reconstruction gains more and more interest in clinical routine, as it promises to reduce image noise (and thereby patient dose), to reduce artifacts, or to improve spatial resolution. Among vendors and researchers, however, there is no consensus of how to best achieve these aims. The general approach is to incorporatea priori knowledge into iterative image reconstruction, for example, by adding additional constraints to the cost function, which penalize variations between neighboring voxels. However, this approach to regularization in general poses a resolution noise trade-off because the stronger the regularization, and thus the noise reduction, the stronger the loss of spatial resolution and thus loss of anatomical detail. The authors propose a method which tries to improve this trade-off. The proposed reconstruction algorithm is called alpha image reconstruction (AIR). One starts with generating basis images, which emphasize certain desired image properties, like high resolution or low noise. The AIR algorithm reconstructs voxel-specific weighting coefficients that are applied to combine the basis images. By combining the desired properties of each basis image, one can generate an image with lower noise and maintained high contrast resolution thus improving the resolution noise trade-off. Methods: All simulations and reconstructions are performed in native fan-beam geometry. A water phantom with resolution bar patterns and low contrast disks is simulated. A filtered backprojection (FBP) reconstruction with a Ram-Lak kernel is used as a reference reconstruction. The results of AIR are compared against the FBP results and against a penalized weighted least squares reconstruction which uses total variation as regularization. The simulations are based on the geometry of the Siemens Somatom Definition Flash scanner. To quantitatively assess image quality, the authors analyze line profiles through resolution patterns to define a contrast
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[Reconstructive surgery of cranio-orbital injuries].
Eolchiian, S A; Potapov, A A; Serova, N K; Kataev, M G; Sergeeva, L A; Zakharova, N E; Van Damm, P
2011-01-01
The aim of study was to optimize evaluation and surgery of cranioorbital injuries in different periods after trauma. Material and methods. We analyzed 374 patients with cranioorbital injuries treated in Burdenko Neurosurgery Institute in different periods after trauma from January 1998 till April 2010. 288 (77%) underwent skull and facial skeleton reconstructive surgery within 24 hours - 7 years after trauma. Clinical and CT examination data were used for preoperative planning and assessment of surgery results. Stereolithographic models (STLM) were applied for preoperative planning in 89 cases. The follow-up period ranged from 4 months up to 10 years. Results. In 254 (88%) of 288 patients reconstruction of anterior skull base, upper and/or midface with restoration of different parts of orbit was performed. Anterior skull base CSF leaks repair, calvarial vault reconstruction, maxillar and mandibular osteosynthesis were done in 34 (12%) cases. 242 (84%) of 288 patients underwent one reconstructive operation, while 46 (16%)--two and more (totally 105 operations). The patients with extended frontoorbital and midface fractures commonly needed more than one operation--in 27 (62.8%) cases. Different plastic materials were used for reconstruction in 233 (80.9%) patients, of those in 147 (51%) cases split calvarial bone grafts were preferred. Good functional and cosmetic results were achieved in 261 (90.6%) of 288 patients while acceptable were observed in 27 (9.4%). Conclusion. Active single-stage surgical management for repair of combined cranioorbital injury in acute period with primary reconstruction optimizes functional and cosmetic outcomes and prevents the problems of delayed or secondary reconstruction. Severe extended anterior skull base, upper and midface injuries when intracranial surgery is needed produced the most challenging difficulties for adequate reconstruction. Randomized trial is required to define the extent and optimal timing of reconstructive surgery
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Tejedor, E.; Saz, M. A.; Esper, J.; Cuadrat, J. M.; de Luis, M.
2017-08-01
Drought recurrence in the Mediterranean is regarded as a fundamental factor for socioeconomic development and the resilience of natural systems in context of global change. However, knowledge of past droughts has been hampered by the absence of high-resolution proxies. We present a drought reconstruction for the northeast of the Iberian Peninsula based on a new dendrochronology network considering the Standardized Evapotranspiration Precipitation Index (SPEI). A total of 774 latewood width series from 387 trees of P. sylvestris and P. uncinata was combined in an interregional chronology. The new chronology, calibrated against gridded climate data, reveals a robust relationship with the SPEI representing drought conditions of July and August. We developed a summer drought reconstruction for the period 1734-2013 representative for the northeastern and central Iberian Peninsula. We identified 16 extremely dry and 17 extremely wet summers and four decadal scale dry and wet periods, including 2003-2013 as the driest episode of the reconstruction.
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Compressed Sensing, Pseudodictionary-Based, Superresolution Reconstruction
Directory of Open Access Journals (Sweden)
Chun-mei Li
2016-01-01
Full Text Available The spatial resolution of digital images is the critical factor that affects photogrammetry precision. Single-frame, superresolution, image reconstruction is a typical underdetermined, inverse problem. To solve this type of problem, a compressive, sensing, pseudodictionary-based, superresolution reconstruction method is proposed in this study. The proposed method achieves pseudodictionary learning with an available low-resolution image and uses the K-SVD algorithm, which is based on the sparse characteristics of the digital image. Then, the sparse representation coefficient of the low-resolution image is obtained by solving the norm of l0 minimization problem, and the sparse coefficient and high-resolution pseudodictionary are used to reconstruct image tiles with high resolution. Finally, single-frame-image superresolution reconstruction is achieved. The proposed method is applied to photogrammetric images, and the experimental results indicate that the proposed method effectively increase image resolution, increase image information content, and achieve superresolution reconstruction. The reconstructed results are better than those obtained from traditional interpolation methods in aspect of visual effects and quantitative indicators.
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Distributed MRI reconstruction using Gadgetron-based cloud computing.
Xue, Hui; Inati, Souheil; Sørensen, Thomas Sangild; Kellman, Peter; Hansen, Michael S
2015-03-01
To expand the open source Gadgetron reconstruction framework to support distributed computing and to demonstrate that a multinode version of the Gadgetron can be used to provide nonlinear reconstruction with clinically acceptable latency. The Gadgetron framework was extended with new software components that enable an arbitrary number of Gadgetron instances to collaborate on a reconstruction task. This cloud-enabled version of the Gadgetron was deployed on three different distributed computing platforms ranging from a heterogeneous collection of commodity computers to the commercial Amazon Elastic Compute Cloud. The Gadgetron cloud was used to provide nonlinear, compressed sensing reconstruction on a clinical scanner with low reconstruction latency (eg, cardiac and neuroimaging applications). The proposed setup was able to handle acquisition and 11 -SPIRiT reconstruction of nine high temporal resolution real-time, cardiac short axis cine acquisitions, covering the ventricles for functional evaluation, in under 1 min. A three-dimensional high-resolution brain acquisition with 1 mm(3) isotropic pixel size was acquired and reconstructed with nonlinear reconstruction in less than 5 min. A distributed computing enabled Gadgetron provides a scalable way to improve reconstruction performance using commodity cluster computing. Nonlinear, compressed sensing reconstruction can be deployed clinically with low image reconstruction latency. © 2014 Wiley Periodicals, Inc.
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Directory of Open Access Journals (Sweden)
Abdul Majeed
Full Text Available Maxillofacial trauma are common, secondary to road traffic accident, sports injury, falls and require sophisticated radiological imaging to precisely diagnose. A direct surgical reconstruction is complex and require clinical expertise. Bio-modelling helps in reconstructing surface model from 2D contours. In this manuscript we have constructed the 3D surface using 2D Computerized Tomography (CT scan contours. The fracture part of the cranial vault are reconstructed using GC1 rational cubic Ball curve with three free parameters, later the 2D contours are flipped into 3D with equidistant z component. The constructed surface is represented by contours blending interpolant. At the end of this manuscript a case report of parietal bone fracture is also illustrated by employing this method with a Graphical User Interface (GUI illustration.
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Tarsitano, Achille; Badiali, Giovanni; Pizzigallo, Angelo; Marchetti, Claudio
2016-10-01
Enophthalmos is a severe complication of primary reconstruction of orbital floor fractures. The goal of secondary reconstruction procedures is to restore symmetrical globe positions to recover function and aesthetics. The authors propose a new method of orbital floor reconstruction using a mirroring technique and a customized titanium mesh, printed using a direct metal laser-sintering method. This reconstructive protocol involves 4 steps: mirroring of the healthy orbit at the affected site, virtual design of a patient-specific orbital floor mesh, CAM procedures for direct laser-sintering of the customized titanium mesh, and surgical insertion of the device. Using a computed tomography data set, the normal, uninjured side of the craniofacial skeleton was reflected onto the contralateral injured side, and a reconstructive orbital floor mesh was designed virtually on the mirrored orbital bone surface. The solid-to-layer files of the mesh were then manufactured using direct metal laser sintering, which resolves the shaping and bending biases inherent in the indirect method. An intraoperative navigation system ensured accuracy of the entire procedure. Clinical outcomes were assessed using 3dMD photogrammetry and computed tomography data in 7 treated patients. The technique described here appears to be a viable method to correct complex orbital floor defects needing delayed reconstruction. This study represents the first step in the development of a wider experimental protocol for orbital floor reconstruction using computer-assisted design-computer-assisted manufacturing technology.
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3-D image reconstruction in radiology
International Nuclear Information System (INIS)
Grangeat, P.
1999-01-01
In this course, we present highlights on fully 3-D image reconstruction algorithms used in 3-D X-ray Computed Tomography (3-D-CT) and 3-D Rotational Radiography (3-D-RR). We first consider the case of spiral CT with a one-row detector. Starting from the 2-D fan-beam inversion formula for a circular trajectory, we introduce spiral CT 3-D image reconstruction algorithm using axial interpolation for each transverse slice. In order to improve the X-ray detection efficiency and to speed the acquisition process, the future is to use multi-row detectors associated with small angle cone-beam geometry. The generalization of the 2-D fan-beam image reconstruction algorithm to cone beam defined direct inversion formula referred as Feldkamp's algorithm for a circular trajectory and Wang's algorithm for a spiral trajectory. However, large area detectors does exist such as Radiological Image Intensifiers or in a near future solid state detectors. To get a larger zoom effect, it defines a cone-beam geometry associated with a large aperture angle. For this case, we introduce indirect image reconstruction algorithm by plane re-binning in the Radon domain. We will present some results from a prototype MORPHOMETER device using the RADON reconstruction software. Lastly, we consider the special case of 3-D Rotational Digital Subtraction Angiography with a restricted number of views. We introduce constraint optimization algorithm using quadratic, entropic or half-quadratic constraints. Generalized ART (Algebraic Reconstruction Technique) iterative reconstruction algorithm can be derived from the Bregman algorithm. We present reconstructed vascular trees from a prototype MORPHOMETER device. (author)
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Lamore, Kristopher; Quintard, Bruno; Flahault, Cécile; Van Wersch, Anna; Untas, Aurélie
2016-06-01
This preliminary study explores the psychological and marital impact of breast reconstruction (or lack thereof) in women who had a mastectomy due to breast cancer. The study was carried out through an innovative and French community-based research tool on cancer: the Seintinelles. Sixty-nine partnered women treated for breast cancer participated, divided into 3 groups: 19 without breast reconstruction, 24 with immediate breast reconstruction and 26 with delayed breast reconstruction. They completed online questionnaires measuring both satisfaction and regret about the decision related to breast reconstruction, quality of life after breast surgery (EORTC-BRR), emotional state (POMS) and marital intimacy (PAIR). Recruitment through the Seintinelles had the advantage of being quick and national, but the profile of participants deviated from the mean population in the sense that our subjects were on average younger than women affected by breast cancer and had faced more breast cancer in their family. The results revealed that women are satisfied with their choice (little regret), have a similar emotional experience and good marital intimacy. However, women without breast reconstruction would less recommend their decision to others and were less satisfied with the aesthetic result, compared to women with breast reconstruction. These results highlight that psychological and marital impact seems comparable in women with and without reconstruction. Future studies are needed to better understand the role of the partner in the recourse of breast reconstruction. Copyright © 2016 Société Française du Cancer. Published by Elsevier Masson SAS. All rights reserved.
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No economic benefit of early knee reconstruction over optional delayed reconstruction for ACL tears
DEFF Research Database (Denmark)
Kiadaliri, Aliasghar A; Englund, Martin; Stefan Lohmander, L.
2016-01-01
Background To analyse 5-year cost-effectiveness of early versus optional delayed acute anterior cruciate ligament (ACL) reconstruction. Methods 121 young, active adults with acute ACL injury to a previously uninjured knee were randomised to early ACL reconstruction (n=62, within 10 weeks of injur...
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Dubois, L.; Steenen, S. A.; Gooris, P. J. J.; Bos, R. R. M.; Becking, A. G.
The goal of orbital reconstruction is to repair trauma defects, to correct the position of the eye anatomically, avoiding enophthalmos, and to restore ocular function. For the reconstruction of (trauma) defects, many surgeons recommend materials that can be bent into an anatomical shape and that
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Breast reconstruction and post-mastectomy radiation practice
International Nuclear Information System (INIS)
Chen, Susie A; Hiley, Crispin; Nickleach, Dana; Petsuksiri, Janjira; Andic, Fundagul; Riesterer, Oliver; Switchenko, Jeffrey M; Torres, Mylin A
2013-01-01
The goal of this study was to explore the perspectives and practice of radiation oncologists who treat breast cancer patients who have had breast reconstruction. In 2010, an original electronic survey was sent to all physician members of the American Society of Radiation Oncology, National Cancer Research Institute-Breast Cancer Studies Group in the United Kingdom, Thai Society of Therapeutic Radiology and Oncology, Swiss Society of Radiation Oncology, and Turkish Radiation Oncology Society. We identified factors associated with radiation oncologists who treat breast cancer patients with reconstruction performed prior to radiation and obtained information regarding radiation management of the breast reconstruction. 358 radiation oncologists responded, and 60% of the physicians were from the United States. While 64% of participants agree or strongly agree that breast image affects a woman’s quality of life during radiation, 57% feel that reconstruction challenges their ability to deliver effective breast radiation. Compared with other countries, treatment within the United States was associated with a high reconstruction rate (>/= 50% of mastectomy patients) prior to radiation (p < 0.05). Delayed-immediate reconstruction with a temporary tissue expander was more common in the United States than in other countries (52% vs. 23%, p = 0.01). Among physicians who treat patients with tissue expanders, the majority (60%) prefer a moderately inflated implant with 150-250 cc of fluid rather than a completely deflated (13%) or inflated expander (28%) during radiation. Among radiation oncologists who treat reconstructions, 49% never use bolus and 40% never boost a breast reconstruction. United States physicians were more likely than physicians from other countries to boost or bolus the reconstruction irrespective of the type of reconstruction seen in their clinic patients (p < 0.01). Great variation in practice is evident from our study of radiation treatment for breast
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Boomerang flap reconstruction for the breast.
Baumholtz, Michael A; Al-Shunnar, Buthainah M; Dabb, Richard W
2002-07-01
The boomerang-shaped latissimus dorsi musculocutaneous flap for breast reconstruction offers a stable platform for breast reconstruction. It allows for maximal aesthetic results with minimal complications. The authors describe a skin paddle to obtain a larger volume than either the traditional elliptical skin paddle or the extended latissimus flap. There are three specific advantages to the boomerang design: large volume, conical shape (often lacking in the traditional skin paddle), and an acceptable donor scar. Thirty-eight flaps were performed. No reconstruction interfered with patient's ongoing oncological regimen. The most common complication was seroma, which is consistent with other latissimus reconstructions.
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Bunawan, Hamidun; Yen, Choong Chee; Yaakop, Salmah; Noor, Normah Mohd
2017-01-01
Background The chloroplastic trnL intron and the nuclear internal transcribed spacer (ITS) region were sequenced for 11 Nepenthes species recorded in Peninsular Malaysia to examine their phylogenetic relationship and to evaluate the usage of trnL intron and ITS sequences for phylogenetic reconstruction of this genus. Results Phylogeny reconstruction was carried out using neighbor-joining, maximum parsimony and Bayesian analyses. All the trees revealed two major clusters, a lowland group consi...
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Additive manufacturing technology in reconstructive surgery.
Fuller, Scott C; Moore, Michael G
2016-10-01
Technological advances have been part and parcel of modern reconstructive surgery, in that practitioners of this discipline are continually looking for innovative ways to perfect their craft and improve patient outcomes. We are currently in a technological climate wherein advances in computers, imaging, and science have coalesced with resulting innovative breakthroughs that are not merely limited to improved outcomes and enhanced patient care, but may provide novel approaches to training the next generation of reconstructive surgeons. New developments in software and modeling platforms, imaging modalities, tissue engineering, additive manufacturing, and customization of implants are poised to revolutionize the field of reconstructive surgery. The interface between technological advances and reconstructive surgery continues to expand. Additive manufacturing techniques continue to evolve in an effort to improve patient outcomes, decrease operative time, and serve as instructional tools for the training of reconstructive surgeons.
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Wilkins, Edwin G; Hamill, Jennifer B; Kim, Hyungjin M; Kim, John Y; Greco, Richard J; Qi, Ji; Pusic, Andrea L
2018-01-01
In postmastectomy reconstruction, procedure choice is heavily influenced by the relative risks of the various options. This study sought to evaluate complications in a large, multicenter patient population. Previous studies have reported widely varying complication rates, but have been limited by their single center designs and inadequate controlling for confounders in their analyses. Eleven sites enrolled women undergoing first time, immediate, or delayed reconstruction following mastectomy for cancer treatment or prophylaxis. Procedures included expander/implant, latissimus dorsi (LD), pedicle transverse rectus abdominis musculocutaneous (PTRAM), free TRAM (FTRAM), and deep inferior epigastric perforator (DIEP) techniques. Data were gathered pre- and postoperatively from medical records. Separate logistic regressions were conducted for all complications and major complications (those requiring rehospitalization and/or reoperation) within 1 year. Odds ratios (ORs) were calculated for procedure type, controlling for site, demographic, and clinical variables. Complication rates for 2234 patients were analyzed. Compared with expander/implant reconstructions, LD (OR) 1.95, P = 0.026), PTRAM (OR 1.89, P = 0.025), FTRAM (OR 1.94, P = 0.011), and DIEP (OR 2.22, P procedures were associated with higher risks of complications. Significantly higher risks were also associated with older age, higher body mass index (BMI), immediate reconstruction, bilateral procedures, and radiation. For major complications, regression showed significantly greater risks for PTRAM (OR 1.86, P = 0.044) and DIEP (OR 1.75, P = 0.004), than expander/implant reconstructions. Failure rates were relatively low, ranging from 0% for PTRAM to 5.9% for expander/implant reconstructions. In this multicenter analysis, procedure choice and other patient variables were significant predictors of 1-year complications in breast reconstruction. These findings should be considered in counseling patients on
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Progressive Reconstruction: A Methodology for Stabilization and Reconstruction Operations
National Research Council Canada - National Science Library
Rohr, Karl C
2006-01-01
... these nations in accordance with stated United States' goals. The argument follows closely current and developing United States military doctrine on stabilization, reconstruction, and counterinsurgency operations...
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[Suicide -- an essay trying to reveal the theme].
Sampaio, M A; Boemer, M R
2000-12-01
This essay proposes to reveal facets of the suicide through the discourse of different authors treating this theme as well as through contacts that I was able to have in my nursing training, through my academic trajectory. This trajectory includes an incursion by phenomenological ideas, mainly by the ideas of Heidegger and his existential analysis of the man as being-there. In this way, the understanding of a person who decides to finalize his/her existence, can be, by the existential analysis perspective, a way to reconstruct and redimension his/her existential perspectives.
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Titanium template for scaphoid reconstruction.
Haefeli, M; Schaefer, D J; Schumacher, R; Müller-Gerbl, M; Honigmann, P
2015-06-01
Reconstruction of a non-united scaphoid with a humpback deformity involves resection of the non-union followed by bone grafting and fixation of the fragments. Intraoperative control of the reconstruction is difficult owing to the complex three-dimensional shape of the scaphoid and the other carpal bones overlying the scaphoid on lateral radiographs. We developed a titanium template that fits exactly to the surfaces of the proximal and distal scaphoid poles to define their position relative to each other after resection of the non-union. The templates were designed on three-dimensional computed tomography reconstructions and manufactured using selective laser melting technology. Ten conserved human wrists were used to simulate the reconstruction. The achieved precision measured as the deviation of the surface of the reconstructed scaphoid from its virtual counterpart was good in five cases (maximal difference 1.5 mm), moderate in one case (maximal difference 3 mm) and inadequate in four cases (difference more than 3 mm). The main problems were attributed to the template design and can be avoided by improved pre-operative planning, as shown in a clinical case. © The Author(s) 2014.
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Dynamic dual-tracer PET reconstruction.
Gao, Fei; Liu, Huafeng; Jian, Yiqiang; Shi, Pengcheng
2009-01-01
Although of important medical implications, simultaneous dual-tracer positron emission tomography reconstruction remains a challenging problem, primarily because the photon measurements from dual tracers are overlapped. In this paper, we propose a simultaneous dynamic dual-tracer reconstruction of tissue activity maps based on guidance from tracer kinetics. The dual-tracer reconstruction problem is formulated in a state-space representation, where parallel compartment models serve as continuous-time system equation describing the tracer kinetic processes of dual tracers, and the imaging data is expressed as discrete sampling of the system states in measurement equation. The image reconstruction problem has therefore become a state estimation problem in a continuous-discrete hybrid paradigm, and H infinity filtering is adopted as the estimation strategy. As H infinity filtering makes no assumptions on the system and measurement statistics, robust reconstruction results can be obtained for the dual-tracer PET imaging system where the statistical properties of measurement data and system uncertainty are not available a priori, even when there are disturbances in the kinetic parameters. Experimental results on digital phantoms, Monte Carlo simulations and physical phantoms have demonstrated the superior performance.
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Connected Filtering by Reconstruction : Basis and New Advances
Wilkinson, Michael H.F.
2008-01-01
Openings-by-reconstruction are the oldest connected filters, and indeed, reconstruction methodology lies at the heart of many connected operators such as levelings. Starting out from the basic reconstruction principle of iterated geodesic dilations, extensions such as the use of reconstruction
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CONNECTED FILTERING BY RECONSTRUCTION : BASIS AND NEW ADVANCES
Wilkinson, Michael H. F.
2008-01-01
Openings-by-reconstruction are the oldest connected filters, and indeed, reconstruction methodology lies at the heart of many connected operators such as levelings. Starting out from the basic reconstruction principle of iterated geodesic dilations, extensions such as the use of reconstruction
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Tomographic reconstruction of binary fields
International Nuclear Information System (INIS)
Roux, Stéphane; Leclerc, Hugo; Hild, François
2012-01-01
A novel algorithm is proposed for reconstructing binary images from their projection along a set of different orientations. Based on a nonlinear transformation of the projection data, classical back-projection procedures can be used iteratively to converge to the sought image. A multiscale implementation allows for a faster convergence. The algorithm is tested on images up to 1 Mb definition, and an error free reconstruction is achieved with a very limited number of projection data, saving a factor of about 100 on the number of projections required for classical reconstruction algorithms.
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Inbal, Amir; Lemelman, Benjamin T; Millet, Eran; Greensmith, Andrew
2017-10-16
Auricular reconstruction is one of the most challenging procedures in plastic surgery. An adequate skin envelope is essential for cartilage framework coverage, yet few good options exist without additional surgery. We propose a novel method for minimally invasive tissue expansion, using hyaluronic acid (HA) filler to allow for single-stage ear reconstruction. To introduce the novel concept of HA filler for tissue expansion in ear reconstruction, and as an alternative to traditional expansion techniques. Macrolane is a large particle HA gel developed for large volume restoration. Expansion of the non-hair-bearing mastoid skin was performed in our clinic weekly or every other week. Final expansion was completed one week prior to reconstructive surgery. Tissue from one patient's expanded pocket was sent for histological analysis. Ten patients underwent single-stage auricular reconstruction with preoperative expansion. Injection sessions ranged from 7 to 13 (mean, 9.7). Mean injected volume per session was 2.03 mL per patient, for an average total of 19.8 mL (range, 14.5-30 mL). There were no major complications. One minor complication required removal of exposed wire from the antihelix in the office. Hematoxylin and eosin stain revealed similar histology to that seen with traditional expanders. This novel expansion technique using serial HA injections allowed for optimized skin coverage in single-stage ear reconstruction. The concept of tissue expansion using HA filler is a new frontier for research that may be applicable to other arenas of reconstruction. 4. © 2017 The American Society for Aesthetic Plastic Surgery, Inc. Reprints and permission: journals.permissions@oup.com
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Labral reconstruction: when to perform and how
Directory of Open Access Journals (Sweden)
Brian J White
2015-07-01
Full Text Available Over the past decade, the understanding of the anatomy and function of the hip joint has continuously evolved, and surgical treatment options for the hip have significantly progressed. Originally, surgical treatment of the hip primarily involved resection of damaged tissue. Procedures that maintain and preserve proper hip anatomy, such as labral repair and femoroacetabular impingement (FAI correction, have shown superior results, in terms of pain reduction, increased function, and ability to return to activities. Labral reconstruction is a treatment option that uses a graft to reconstruct the native labrum. The technique and outcomes of labral reconstruction have been described relatively recently, and labral reconstruction is a cutting edge procedure that has shown promising early outcomes. The aim of this article is to review the current literature on hip labral reconstruction. We will review the indications for labral reconstruction, surgical technique and graft options, and surgical outcomes that have been described to date. Labral reconstruction provides an alternative treatment option for challenging intra-articular hip problems. Labral reconstruction restores the original anatomy of the hip and has the potential to preserve the longevity of the hip joint. This technique is an important tool in the orthopaedic surgeon’s arsenal for hip joint treatment and preservation.
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CURRENT CONCEPTS IN ACL RECONSTRUCTION
Directory of Open Access Journals (Sweden)
Freddie H. Fu
2008-09-01
Full Text Available Current Concepts in ACL Reconstruction is a complete reference text composed of the most thorough collection of topics on the ACL and its surgical reconstruction compiled, with contributions from some of the world's experts and most experienced ACL surgeons. Various procedures mentioned throughout the text are also demonstrated in an accompanying video CD-ROM. PURPOSE Composing a single, comprehensive and complete information source on ACL including basic sciences, clinical issues, latest concepts and surgical techniques, from evaluation to outcome, from history to future, editors and contributors have targeted to keep the audience pace with the latest concepts and techniques for the evaluation and the treatment of ACL injuries. FEATURES The text is composed of 27 chapters in 6 sections. The first section is mostly about basic sciences, also history of the ACL, imaging, clinical approach to adolescent and pediatric patients are subjected. In the second section, Graft Choices and Arthroscopy Portals for ACL Reconstruction are mentioned. The third section is about the technique and the outcome of the single-bundle ACL reconstruction. The fourth chapter includes the techniques and outcome of the double-bundle ACL reconstruction. In the fifth chapter revision, navigation technology, rehabilitation and the evaluation of the outcome of ACL reconstruction is subjected. The sixth/the last chapter is about the future advances to reach: What We Have Learned and the Future of ACL Reconstruction. AUDIENCE Orthopedic residents, sports traumatology and knee surgery fellows, orthopedic surgeons, also scientists in basic sciences or clinicians who are studying or planning a research on ACL forms the audience group of this book. ASSESSMENT This is the latest, the most complete and comprehensive textbook of ACL reconstruction produced by the editorial work up of two pioneer and masters "Freddie H. Fu MD and Steven B. Cohen MD" with the contribution of world
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National Oceanic and Atmospheric Administration, Department of Commerce — The NOAA Paleoclimatology Program archives reconstructions of past climatic conditions derived from paleoclimate proxies, in addition to the Program's large holdings...
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Top reconstruction and boosted top experimental overview
Skinnari, Louise
2015-01-01
An overview of techniques used to reconstruct resolved and boosted top quarks is presented. Techniques for resolved top quark reconstruction include kinematic likelihood fitters and pseudo- top reconstruction. Many tools and methods are available for the reconstruction of boosted top quarks, such as jet grooming techniques, jet substructure variables, and dedicated top taggers. Different techniques as used by ATLAS and CMS analyses are described and the performance of different variables and top taggers are shown.
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Sparse Image Reconstruction in Computed Tomography
DEFF Research Database (Denmark)
Jørgensen, Jakob Sauer
In recent years, increased focus on the potentially harmful effects of x-ray computed tomography (CT) scans, such as radiation-induced cancer, has motivated research on new low-dose imaging techniques. Sparse image reconstruction methods, as studied for instance in the field of compressed sensing...... applications. This thesis takes a systematic approach toward establishing quantitative understanding of conditions for sparse reconstruction to work well in CT. A general framework for analyzing sparse reconstruction methods in CT is introduced and two sets of computational tools are proposed: 1...... contributions to a general set of computational characterization tools. Thus, the thesis contributions help advance sparse reconstruction methods toward routine use in...
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Medical image reconstruction. A conceptual tutorial
International Nuclear Information System (INIS)
Zeng, Gengsheng Lawrence
2010-01-01
''Medical Image Reconstruction: A Conceptual Tutorial'' introduces the classical and modern image reconstruction technologies, such as two-dimensional (2D) parallel-beam and fan-beam imaging, three-dimensional (3D) parallel ray, parallel plane, and cone-beam imaging. This book presents both analytical and iterative methods of these technologies and their applications in X-ray CT (computed tomography), SPECT (single photon emission computed tomography), PET (positron emission tomography), and MRI (magnetic resonance imaging). Contemporary research results in exact region-of-interest (ROI) reconstruction with truncated projections, Katsevich's cone-beam filtered backprojection algorithm, and reconstruction with highly undersampled data with l 0 -minimization are also included. (orig.)
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Gong, Zhao-Jian; Ren, Zhen-Hu; Wang, Kai; Tan, Hong-Yu; Zhang, Sheng; Wu, Han-Jiang
2017-11-01
To explore a new method of reconstruction of through-and-through cheek defects and to evaluate this method's efficacy and patient prognosis. This retrospective study included 70 patients who underwent reconstruction of through-and-through cheek defects. The surgical approach, design of facial skin incisions, selection and design of flaps, postoperative quality of life and prognosis of patients were recorded and reported. Postoperative quality of life gradually increased over time, and the mean scores of University of Washington Quality of Life (UW-QOL) Questionnaire was more than 80 at 1-year postoperatively. The appearance, oral competence, chewing, swallowing, speech and other oral functions were well recovered in about 90% of patients at 1-year postoperatively. This new idea of reconstruction before tumour resection, brings the effect of plastic and reconstructive surgery to a new height. Copyright © 2017. Published by Elsevier Ltd.
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Schullcke, Benjamin; Gong, Bo; Krueger-Ziolek, Sabine; Soleimani, Manuchehr; Mueller-Lisse, Ullrich; Moeller, Knut
2016-05-16
Lung EIT is a functional imaging method that utilizes electrical currents to reconstruct images of conductivity changes inside the thorax. This technique is radiation free and applicable at the bedside, but lacks of spatial resolution compared to morphological imaging methods such as X-ray computed tomography (CT). In this article we describe an approach for EIT image reconstruction using morphologic information obtained from other structural imaging modalities. This leads to recon- structed images of lung ventilation that can easily be superimposed with structural CT or MRI images, which facilitates image interpretation. The approach is based on a Discrete Cosine Transformation (DCT) of an image of the considered transversal thorax slice. The use of DCT enables reduction of the dimensionality of the reconstruction and ensures that only conductivity changes of the lungs are reconstructed and displayed. The DCT based approach is well suited to fuse morphological image information with functional lung imaging at low computational costs. Results on simulated data indicate that this approach preserves the morphological structures of the lungs and avoids blurring of the solution. Images from patient measurements reveal the capabilities of the method and demonstrate benefits in possible applications.
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Considerations on Xi- reconstruction in LHCb
Brochu, F.M.
2016-01-01
This paper describes an alternative method of charged hyperon reconstruction applicable to the LHCb experiment. It extends the seminal work of the FOCUS collaboration to the specific detector layout of LHCb and addresses the reconstruction ambiguities reported in their earlier work, leading to improvements in the reconstruction efficiency for the specific cases of Xi- and Omega- baryon decays to a charged meson and a Lambda baryon.
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Huang, Xiaokun; Zhang, You; Wang, Jing
2018-02-01
Reconstructing four-dimensional cone-beam computed tomography (4D-CBCT) images directly from respiratory phase-sorted traditional 3D-CBCT projections can capture target motion trajectory, reduce motion artifacts, and reduce imaging dose and time. However, the limited numbers of projections in each phase after phase-sorting decreases CBCT image quality under traditional reconstruction techniques. To address this problem, we developed a simultaneous motion estimation and image reconstruction (SMEIR) algorithm, an iterative method that can reconstruct higher quality 4D-CBCT images from limited projections using an inter-phase intensity-driven motion model. However, the accuracy of the intensity-driven motion model is limited in regions with fine details whose quality is degraded due to insufficient projection number, which consequently degrades the reconstructed image quality in corresponding regions. In this study, we developed a new 4D-CBCT reconstruction algorithm by introducing biomechanical modeling into SMEIR (SMEIR-Bio) to boost the accuracy of the motion model in regions with small fine structures. The biomechanical modeling uses tetrahedral meshes to model organs of interest and solves internal organ motion using tissue elasticity parameters and mesh boundary conditions. This physics-driven approach enhances the accuracy of solved motion in the organ’s fine structures regions. This study used 11 lung patient cases to evaluate the performance of SMEIR-Bio, making both qualitative and quantitative comparisons between SMEIR-Bio, SMEIR, and the algebraic reconstruction technique with total variation regularization (ART-TV). The reconstruction results suggest that SMEIR-Bio improves the motion model’s accuracy in regions containing small fine details, which consequently enhances the accuracy and quality of the reconstructed 4D-CBCT images.
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Updates in Head and Neck Reconstruction.
Largo, Rene D; Garvey, Patrick B
2018-02-01
After reading this article, the participant should be able to: 1. Have a basic understanding of virtual planning, rapid prototype modeling, three-dimensional printing, and computer-assisted design and manufacture. 2. Understand the principles of combining virtual planning and vascular mapping. 3. Understand principles of flap choice and design in preoperative planning of free osteocutaneous flaps in mandible and midface reconstruction. 4. Discuss advantages and disadvantages of computer-assisted design and manufacture in reconstruction of advanced oncologic mandible and midface defects. Virtual planning and rapid prototype modeling are increasingly used in head and neck reconstruction with the aim of achieving superior surgical outcomes in functionally and aesthetically critical areas of the head and neck compared with conventional reconstruction. The reconstructive surgeon must be able to understand this rapidly-advancing technology, along with its advantages and disadvantages. There is no limit to the degree to which patient-specific data may be integrated into the virtual planning process. For example, vascular mapping can be incorporated into virtual planning of mandible or midface reconstruction. Representative mandible and midface cases are presented to illustrate the process of virtual planning. Although virtual planning has become helpful in head and neck reconstruction, its routine use may be limited by logistic challenges, increased acquisition costs, and limited flexibility for intraoperative modifications. Nevertheless, the authors believe that the superior functional and aesthetic results realized with virtual planning outweigh the limitations.
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Intrinsic functional brain mapping in reconstructed 4D magnetic susceptibility (χ) data space.
Chen, Zikuan; Calhoun, Vince
2015-02-15
By solving an inverse problem of T2*-weighted magnetic resonance imaging for a dynamic fMRI study, we reconstruct a 4D magnetic susceptibility source (χ) data space for intrinsic functional mapping. A 4D phase dataset is calculated from a 4D complex fMRI dataset. The background field and phase wrapping effect are removed by a Laplacian technique. A 3D χ source map is reconstructed from a 3D phase image by a computed inverse MRI (CIMRI) scheme. A 4D χ data space is reconstructed by repeating the 3D χ source reconstruction for each time point. A functional map is calculated by a temporal correlation between voxel signals in the 4D χ space and the timecourse of the task paradigm. With a finger-tapping experiment, we obtain two 3D functional mappings in the 4D magnitude data space and in the reconstructed 4D χ data space. We find that the χ-based functional mapping reveals co-occurrence of bidirectional responses in a 3D activation map that is different from the conventional magnitude-based mapping. The χ-based functional mapping can also be achieved by a 3D deconvolution of a phase activation map. Based on a subject experimental comparison, we show that the 4D χ tomography method could produce a similar χ activation map as obtained by the 3D deconvolution method. By removing the dipole effect and other fMRI technological contaminations, 4D χ tomography provides a 4D χ data space that allows a more direct and truthful functional mapping of a brain activity. Published by Elsevier B.V.
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Secondary reconstruction of maxillofacial trauma.
Castro-Núñez, Jaime; Van Sickels, Joseph E
2017-08-01
Craniomaxillofacial trauma is one of the most complex clinical conditions in contemporary maxillofacial surgery. Vital structures and possible functional and esthetic sequelae are important considerations following this type of trauma and intervention. Despite the best efforts of the primary surgery, there are a group of patients that will have poor outcomes requiring secondary reconstruction to restore form and function. The purpose of this study is to review current concepts on secondary reconstruction to the maxillofacial complex. The evaluation of a posttraumatic patient for a secondary reconstruction must include an assessment of the different subunits of the upper face, middle face, and lower face. Virtual surgical planning and surgical guides represent the most important innovations in secondary reconstruction over the past few years. Intraoperative navigational surgery/computed-assisted navigation is used in complex cases. Facial asymmetry can be corrected or significantly improved by segmentation of the computerized tomography dataset and mirroring of the unaffected side by means of virtual surgical planning. Navigational surgery/computed-assisted navigation allows for a more precise surgical correction when secondary reconstruction involves the replacement of extensive anatomical areas. The use of technology can result in custom-made replacements and prebent plates, which are more stable and resistant to fracture because of metal fatigue. Careful perioperative evaluation is the key to positive outcomes of secondary reconstruction after trauma. The advent of technological tools has played a capital role in helping the surgical team perform a given treatment plan in a more precise and predictable manner.
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Clinical applications of iterative reconstruction
International Nuclear Information System (INIS)
Eberl, S.
1998-01-01
Expectation maximisation (EM) reconstruction largely eliminates the hot and cold streaking artifacts characteristic of filtered-back projection (FBP) reconstruction around localised hot areas, such as the bladder. It also substantially reduces the problem of decreased inferior wall counts in MIBI myocardial perfusion studies due to ''streaking'' from high liver uptake. Non-uniform attenuation and scatter correction, resolution recovery, anatomical information, e.g. from MRI or CT tracer kinetic modelling, can all be built into the EM reconstruction imaging model. The properties of ordered subset EM (OSEM) have also been used to correct for known patient motion as part of the reconstruction process. These uses of EM are elaborated more fully in some of the other abstracts of this meeting. Currently we use OSEM routinely for: (i) studies where streaking is a problem, including all MIBI myocardial perfusion studies, to avoid hot liver inferior wall artifact, (ii) all whole body FDG PET, all lung V/Q SPECT (which have a short acquisition time) and all gated 201 TI myocardial perfusion studies due to improved noise characteristics of OSEM in these studies; (iii) studies with measured, non-uniform attenuation correction. With the accelerated OSEM algorithm, iterative reconstruction is practical for routine clinical applications and we have found OSEM to provide clearly superior reconstructions for the areas listed above and are investigating its application to other studies. In clinical use, we have not found OSEM to introduce artifacts which would not also occur with FBP, e.g. uncorrected patient motion will cause artifacts with both OSEM and FBP
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Reconstruction of blood propagation in three-dimensional rotational X-ray angiography (3D-RA).
Schmitt, Holger; Grass, Michael; Suurmond, Rolf; Köhler, Thomas; Rasche, Volker; Hähnel, Stefan; Heiland, Sabine
2005-10-01
This paper presents a framework of non-interactive algorithms for the mapping of blood flow information to vessels in 3D-RA images. With the presented method, mapping of flow information to 3D-RA images is done automatically without user interaction. So far, radiologists had to perform this task by extensive image comparisons and did not obtain visualizations of the results. In our approach, flow information is reconstructed by forward projection of vessel pieces in a 3D-RA image to a two-dimensional projection series capturing the propagation of a short additional contrast agent bolus. For accurate 2D-3D image registration, an efficient patient motion compensation technique is introduced. As an exemplary flow-related quantity, bolus arrival times are reconstructed for the vessel pieces by matching of intensity-time curves. A plausibility check framework was developed which handles projection ambiguities and corrects for noisy flow reconstruction results. It is based on a linear programming approach to model the feeding structure of the vessel. The flow reconstruction method was applied to 12 cases of cerebral stenoses, AVMs and aneurysms, and it proved to be feasible in the clinical environment. The propagation of the injected contrast agent was reconstructed and visualized in three-dimensional images. The flow reconstruction method was able to visualize different types of useful information. In cases of stenosis of the middle cerebral artery (MCA), flow reconstruction can reveal impeded blood flow depending on the severeness of the stenosis. With cases of AVMs, flow reconstruction can clarify the feeding structure. The presented methods handle the problems imposed by clinical demands such as non-interactive algorithms, patient motion compensation, short reconstruction times, and technical requirements such as correction of noisy bolus arrival times and handling of overlapping vessel pieces. Problems occurred mainly in the reconstruction and segmentation of 3D
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Revealing the correlation between real-space structure and chiral magnetic order at the atomic scale
Hauptmann, Nadine; Dupé, Melanie; Hung, Tzu-Chao; Lemmens, Alexander K.; Wegner, Daniel; Dupé, Bertrand; Khajetoorians, Alexander A.
2018-03-01
We image simultaneously the geometric, the electronic, and the magnetic structures of a buckled iron bilayer film that exhibits chiral magnetic order. We achieve this by combining spin-polarized scanning tunneling microscopy and magnetic exchange force microscopy (SPEX) to independently characterize the geometric as well as the electronic and magnetic structures of nonflat surfaces. This new SPEX imaging technique reveals the geometric height corrugation of the reconstruction lines resulting from strong strain relaxation in the bilayer, enabling the decomposition of the real-space from the electronic structure at the atomic level and the correlation with the resultant spin-spiral ground state. By additionally utilizing adatom manipulation, we reveal the chiral magnetic ground state of portions of the unit cell that were not previously imaged with spin-polarized scanning tunneling microscopy alone. Using density functional theory, we investigate the structural and electronic properties of the reconstructed bilayer and identify the favorable stoichiometry regime in agreement with our experimental result.
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Polaron-Driven Surface Reconstructions
Directory of Open Access Journals (Sweden)
Michele Reticcioli
2017-09-01
Full Text Available Geometric and electronic surface reconstructions determine the physical and chemical properties of surfaces and, consequently, their functionality in applications. The reconstruction of a surface minimizes its surface free energy in otherwise thermodynamically unstable situations, typically caused by dangling bonds, lattice stress, or a divergent surface potential, and it is achieved by a cooperative modification of the atomic and electronic structure. Here, we combined first-principles calculations and surface techniques (scanning tunneling microscopy, non-contact atomic force microscopy, scanning tunneling spectroscopy to report that the repulsion between negatively charged polaronic quasiparticles, formed by the interaction between excess electrons and the lattice phonon field, plays a key role in surface reconstructions. As a paradigmatic example, we explain the (1×1 to (1×2 transition in rutile TiO_{2}(110.
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MR image reconstruction via guided filter.
Huang, Heyan; Yang, Hang; Wang, Kang
2018-04-01
Magnetic resonance imaging (MRI) reconstruction from the smallest possible set of Fourier samples has been a difficult problem in medical imaging field. In our paper, we present a new approach based on a guided filter for efficient MRI recovery algorithm. The guided filter is an edge-preserving smoothing operator and has better behaviors near edges than the bilateral filter. Our reconstruction method is consist of two steps. First, we propose two cost functions which could be computed efficiently and thus obtain two different images. Second, the guided filter is used with these two obtained images for efficient edge-preserving filtering, and one image is used as the guidance image, the other one is used as a filtered image in the guided filter. In our reconstruction algorithm, we can obtain more details by introducing guided filter. We compare our reconstruction algorithm with some competitive MRI reconstruction techniques in terms of PSNR and visual quality. Simulation results are given to show the performance of our new method.
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Zanon, Marco; Davis, Basil A S; Marquer, Laurent; Brewer, Simon; Kaplan, Jed O
2018-01-01
Characterization of land cover change in the past is fundamental to understand the evolution and present state of the Earth system, the amount of carbon and nutrient stocks in terrestrial ecosystems, and the role played by land-atmosphere interactions in influencing climate. The estimation of land cover changes using palynology is a mature field, as thousands of sites in Europe have been investigated over the last century. Nonetheless, a quantitative land cover reconstruction at a continental scale has been largely missing. Here, we present a series of maps detailing the evolution of European forest cover during last 12,000 years. Our reconstructions are based on the Modern Analog Technique (MAT): a calibration dataset is built by coupling modern pollen samples with the corresponding satellite-based forest-cover data. Fossil reconstructions are then performed by assigning to every fossil sample the average forest cover of its closest modern analogs. The occurrence of fossil pollen assemblages with no counterparts in modern vegetation represents a known limit of analog-based methods. To lessen the influence of no-analog situations, pollen taxa were converted into plant functional types prior to running the MAT algorithm. We then interpolate site-specific reconstructions for each timeslice using a four-dimensional gridding procedure to create continuous gridded maps at a continental scale. The performance of the MAT is compared against methodologically independent forest-cover reconstructions produced using the REVEALS method. MAT and REVEALS estimates are most of the time in good agreement at a trend level, yet MAT regularly underestimates the occurrence of densely forested situations, requiring the application of a bias correction procedure. The calibrated MAT-based maps draw a coherent picture of the establishment of forests in Europe in the Early Holocene with the greatest forest-cover fractions reconstructed between ∼8,500 and 6,000 calibrated years BP. This
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High resolution x-ray CMT: Reconstruction methods
Energy Technology Data Exchange (ETDEWEB)
Brown, J.K.
1997-02-01
This paper qualitatively discusses the primary characteristics of methods for reconstructing tomographic images from a set of projections. These reconstruction methods can be categorized as either {open_quotes}analytic{close_quotes} or {open_quotes}iterative{close_quotes} techniques. Analytic algorithms are derived from the formal inversion of equations describing the imaging process, while iterative algorithms incorporate a model of the imaging process and provide a mechanism to iteratively improve image estimates. Analytic reconstruction algorithms are typically computationally more efficient than iterative methods; however, analytic algorithms are available for a relatively limited set of imaging geometries and situations. Thus, the framework of iterative reconstruction methods is better suited for high accuracy, tomographic reconstruction codes.
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A fast image reconstruction technique based on ART
International Nuclear Information System (INIS)
Zhang Shunli; Zhang Dinghua; Wang Kai; Huang Kuidong; Li Weibin
2007-01-01
Algebraic Reconstruction Technique (ART) is an iterative method for image reconstruction. Improving its reconstruction speed has been one of the important researching aspects of ART. For the simplified weight coefficients reconstruction model of ART, a fast grid traverse algorithm is proposed, which can determine the grid index by simple operations such as addition, subtraction and comparison. Since the weight coefficients are calculated at real time during iteration, large amount of storage is saved and the reconstruction speed is greatly increased. Experimental results show that the new algorithm is very effective and the reconstruction speed is improved about 10 times compared with the traditional algorithm. (authors)
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Daut, Gerhard; Jasmin Krahn, Kim; Rabhobisoa, Jean-Jacques; Ornella Moanazafy, Sergénie; Haberzettl, Torsten; Kasper, Thomas; Mäusbacher, Roland; Schwalb, Antje
2017-04-01
high contents in organic matter, indicate a mixed signal of terrestrial input and intra-lake productivity, with sedimentation most probably under anoxic conditions. The marine site, in contrast, is influenced by tides, and characterized by coral debris in the shallow parts of the maar and grey silty sediments in the central part with a water depth of 5 m during low tide. However, initial results indicate that a combination of these maar lakes along climatic gradients hold a high potential for paleoenvironmental reconstructions even on long timescales.
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Flip-avoiding interpolating surface registration for skull reconstruction.
Xie, Shudong; Leow, Wee Kheng; Lee, Hanjing; Lim, Thiam Chye
2018-03-30
Skull reconstruction is an important and challenging task in craniofacial surgery planning, forensic investigation and anthropological studies. Existing methods typically reconstruct approximating surfaces that regard corresponding points on the target skull as soft constraints, thus incurring non-zero error even for non-defective parts and high overall reconstruction error. This paper proposes a novel geometric reconstruction method that non-rigidly registers an interpolating reference surface that regards corresponding target points as hard constraints, thus achieving low reconstruction error. To overcome the shortcoming of interpolating a surface, a flip-avoiding method is used to detect and exclude conflicting hard constraints that would otherwise cause surface patches to flip and self-intersect. Comprehensive test results show that our method is more accurate and robust than existing skull reconstruction methods. By incorporating symmetry constraints, it can produce more symmetric and normal results than other methods in reconstructing defective skulls with a large number of defects. It is robust against severe outliers such as radiation artifacts in computed tomography due to dental implants. In addition, test results also show that our method outperforms thin-plate spline for model resampling, which enables the active shape model to yield more accurate reconstruction results. As the reconstruction accuracy of defective parts varies with the use of different reference models, we also study the implication of reference model selection for skull reconstruction. Copyright © 2018 John Wiley & Sons, Ltd.
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Rampersad, Sephra N; Hosein, Fazeeda N; Carrington, Christine Vf
2014-01-01
The Colletotrichum gloeosporioides species complex is among the most destructive fungal plant pathogens in the world, however, identification of isolates of quarantine importance to the intra-specific level is confounded by a number of factors that affect phylogenetic reconstruction. Information bias and quality parameters were investigated to determine whether nucleotide sequence alignments and phylogenetic trees accurately reflect the genetic diversity and phylogenetic relatedness of individuals. Sequence exploration of GAPDH, ACT, TUB2 and ITS markers indicated that the query sequences had different patterns of nucleotide substitution but were without evidence of base substitution saturation. Regions of high entropy were much more dispersed in the ACT and GAPDH marker alignments than for the ITS and TUB2 markers. A discernible bimodal gap in the genetic distance frequency histograms was produced for the ACT and GAPDH markers which indicated successful separation of intra- and inter-specific sequences in the data set. Overall, analyses indicated clear differences in the ability of these markers to phylogenetically separate individuals to the intra-specific level which coincided with information bias.
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International Nuclear Information System (INIS)
Yan Shi-Chao; Xie Nan; Gong Hui-Qi; Guo Yang; Shan Xin-Yan; Lu Xing-Hua; Sun Qian
2012-01-01
The adsorption and diffusion behaviors of benzene molecules on an Au(111) surface are investigated by low-temperature scanning tunneling microscopy. A herringbone surface reconstruction of the Au(111) surface is imaged with atomic resolution, and significantly different behaviors are observed for benzene molecules adsorbed on step edges and terraces. The electric field induced modification in the molecular diffusion potential is revealed with a 2D molecular gas model, and a new method is developed to map the diffusion potential over the reconstructed Au(111) surface at the nanometer scale. (condensed matter: structure, mechanical and thermal properties)
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Vertex Reconstruction and Performance in ATLAS
Whitmore, Ben William; The ATLAS collaboration
2017-01-01
Efficient and precise reconstruction of the primary vertices in LHC collisions is essential in both the reconstruction of the full kinematic properties of a hard-scatter event and of soft interactions as a measure of the amount of pile-up. The reconstruction of the primary vertices in the busy, high pile up environment of the LHC is a challenging task. The challenges and novel methods developed by the ATLAS experiment to reconstruct vertices in such environments will be presented. The performance of the current vertexing algorithms using Run-2 data will be presented and compared to results from simulation. Additionally, data-driven methods to evaluate vertex resolution, and details of upgrades to the ATLAS inner detector will be presented.
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Reconstructing Nearly Simple Polytopes from their Graph
Doolittle, Joseph
2017-01-01
We present a partial description of which polytopes are reconstructible from their graphs. This is an extension of work by Blind and Mani (1987) and Kalai (1988), which showed that simple polytopes can be reconstructed from their graphs. In particular, we introduce a notion of $h$-nearly simple and prove that 1-nearly simple and 2-nearly simple polytopes are reconstructible from their graphs. We also give an example of a 3-nearly simple polytope which is not reconstructible from its graph. Fu...
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Anatomic Double-bundle ACL Reconstruction
Schreiber, Verena M.; van Eck, Carola F.; Fu, Freddie H.
2010-01-01
Rupture of the anterior cruciate ligament (ACL) is one of the most frequent forms of knee trauma. The traditional surgical treatment for ACL rupture is single-bundle reconstruction. However, during the past few years there has been a shift in interest toward double-bundle reconstruction to closely
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Energy Technology Data Exchange (ETDEWEB)
Mochizuki, H.; Okita, N.; Fujii, T.; Yoshioka, M.; Saito, H. (Tohoku Univ., Sendai (Japan). School of Medicine)
1982-08-01
We studied the sagittal reconstruction technique in computed tomography with metrizamide. Ten ml of metrizamide, 170 mg iodine/ml in concentration, were injected by lumbar puncture. After diffusion of the injected metrizamide, axial computed tomograms were taken by thin slice width (5 mm) with overlapped technique. Then electrical sagittal reconstruction was carried out by optioned software. Injection of metrizamide, non-ionic water soluble contrast media, made clear contrasts among bone, brain parenchyma and cerebrospinal fluid with computed tomography. Sagittal reconstruction technique could reveal more precise details and accurate anatomical relations than ordinary axial computed tomography. This technique was applied on 3 cases (Arnold-Chiari malformation, large cisterna magna and partial agenesis cerebellar vermis), which demonstrated a useful diagnostic procedure for abnormalities of craniovertebral junction and posterior fossa. The adverse reactions of metrizamide were negligible in our series.
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Rational reconstructions of modern physics
Mittelstaedt, Peter
2013-01-01
Newton’s classical physics and its underlying ontology are loaded with several metaphysical hypotheses that cannot be justified by rational reasoning nor by experimental evidence. Furthermore, it is well known that some of these hypotheses are not contained in the great theories of Modern Physics, such as the theory of Special Relativity and Quantum Mechanics. This book shows that, on the basis of Newton’s classical physics and by rational reconstruction, the theory of Special Relativity as well as Quantum Mechanics can be obtained by partly eliminating or attenuating the metaphysical hypotheses. Moreover, it is shown that these reconstructions do not require additional hypotheses or new experimental results. In the second edition the rational reconstructions are completed with respect to General Relativity and Cosmology. In addition, the statistics of quantum objects is elaborated in more detail with respect to the rational reconstruction of quantum mechanics. The new material completes the approach of t...
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Simulation and track reconstruction for beam telescopes
Maqbool, Salman
2017-01-01
Beam telescopes are used for testing new detectors under development. Sensors are placed and a particle beam is passed through them. To test these novel detectors and determine their properties, the particle tracks need to be reconstructed from the known detectors in the telescope. Based on the reconstructed track, it’s predicted hits on the Device under Test (DUT) are compared with the actual hits on the DUT. Several methods exist for track reconstruction, but most of them don’t account for the effects of multiple scattering. General Broken Lines is one such algorithm which incorporates these effects during reconstruction. The aim of this project was to simulate the beam telescope and extend the track reconstruction framework for the FE-I4 telescope, which takes these effects into account. Section 1 introduces the problem, while section 2 focuses on beam telescopes. This is followed by the Allpix2 simulation framework in Section 3. And finally, Section 4 introduces the Proteus track reconstruction framew...
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Evaluation of proxy-based millennial reconstruction methods
Energy Technology Data Exchange (ETDEWEB)
Lee, Terry C.K.; Tsao, Min [University of Victoria, Department of Mathematics and Statistics, Victoria, BC (Canada); Zwiers, Francis W. [Environment Canada, Climate Research Division, Toronto, ON (Canada)
2008-08-15
A range of existing statistical approaches for reconstructing historical temperature variations from proxy data are compared using both climate model data and real-world paleoclimate proxy data. We also propose a new method for reconstruction that is based on a state-space time series model and Kalman filter algorithm. The state-space modelling approach and the recently developed RegEM method generally perform better than their competitors when reconstructing interannual variations in Northern Hemispheric mean surface air temperature. On the other hand, a variety of methods are seen to perform well when reconstructing surface air temperature variability on decadal time scales. An advantage of the new method is that it can incorporate additional, non-temperature, information into the reconstruction, such as the estimated response to external forcing, thereby permitting a simultaneous reconstruction and detection analysis as well as future projection. An application of these extensions is also demonstrated in the paper. (orig.)
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Quadriceps Tendon Autograft Medial Patellofemoral Ligament Reconstruction.
Fink, Christian; Steensen, Robert; Gföller, Peter; Lawton, Robert
2018-06-01
Critically evaluate the published literature related to quadriceps tendon (QT) medial patellofemoral ligament (MPFL) reconstruction. Hamstring tendon (HT) MPFL reconstruction techniques have been shown to successfully restore patella stability, but complications including patella fracture are reported. Quadriceps tendon (QT) reconstruction techniques with an intact graft pedicle on the patella side have the advantage that patella bone tunnel drilling and fixation are no longer needed, reducing risk of patella fracture. Several QT MPFL reconstruction techniques, including minimally invasive surgical (MIS) approaches, have been published with promising clinical results and fewer complications than with HT techniques. Parallel laboratory studies have shown macroscopic anatomy and biomechanical properties of QT are more similar to native MPFL than hamstring (HS) HT, suggesting QT may more accurately restore native joint kinematics. Quadriceps tendon MPFL reconstruction, via both open and MIS techniques, have promising clinical results and offer valuable alternatives to HS grafts for primary and revision MPFL reconstruction in both children and adults.
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Simulation and Track Reconstruction for Beam Telescopes
Maqbool, Salman
2017-01-01
Beam telescopes are an important tool to test new detectors under development in a particle beam. To test these novel detectors and determine their properties, the particle tracks need to be reconstructed from the known detectors in the telescope. Based on the reconstructed track, its predicted position on the Device under Test (DUT) are compared with the actual hits on the DUT. Several methods exist for track reconstruction, but most of them do not account for the effects of multiple scattering. General Broken Lines is one such algorithm which incorporates these effects during reconstruction. The aim of this project was to simulate the beam telescope and extend the track reconstruction framework for the FE-I4 telescope, which takes these effects into account. Section 1 introduces the problem, while section 2 focuses on beam telescopes. This is followed by the Allpix2 simulation framework in Section 3. And finally, Section 4 introduces the Proteus track reconstruction framework along with the General Broken ...
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Method for position emission mammography image reconstruction
Smith, Mark Frederick
2004-10-12
An image reconstruction method comprising accepting coincidence datat from either a data file or in real time from a pair of detector heads, culling event data that is outside a desired energy range, optionally saving the desired data for each detector position or for each pair of detector pixels on the two detector heads, and then reconstructing the image either by backprojection image reconstruction or by iterative image reconstruction. In the backprojection image reconstruction mode, rays are traced between centers of lines of response (LOR's), counts are then either allocated by nearest pixel interpolation or allocated by an overlap method and then corrected for geometric effects and attenuation and the data file updated. If the iterative image reconstruction option is selected, one implementation is to compute a grid Siddon retracing, and to perform maximum likelihood expectation maiximization (MLEM) computed by either: a) tracing parallel rays between subpixels on opposite detector heads; or b) tracing rays between randomized endpoint locations on opposite detector heads.
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Cryo-electron microscopy and three-dimensional reconstructions of hepatitis C virus particles
International Nuclear Information System (INIS)
Yu Xuekui; Qiao Ming; Atanasov, Ivo; Hu Zongyi; Kato, Takanobu; Liang, T. Jake; Zhou, Z. Hong
2007-01-01
The structural details of hepatitis C virus (HCV) have been elusive because of the lack of a robust tissue culture system for producing an adequate amount of virions from infectious sources for in-depth three-dimensional (3D) structural analysis. Using both negative-stain and cryo-electron microscopy (cryoEM), we show that HCV virions isolated from cell culture have a rather uniform size of 500 A in diameter and that recombinantly expressed HCV-like particles (HCV-LPs) have similar morphologic, biophysical and antigenic features in spite of the varying sizes of the particles. 3D reconstructions were obtained from HCV-LPs with the same size as the HCV virions in the presence and absence of monoclonal antibodies bound to the E1 glycoprotein. The 3D reconstruction of HCV-LP reveals a multilayered architecture, with smooth outer-layer densities arranged in a 'fishbone' configuration. Reconstruction of the particles in complex with anti-E1 antibodies shows that sites of the E1 epitope are exposed and surround the 5-, 3- and 2-fold axes. The binding pattern of the anti-E1 antibody and the fitting of the structure of the dengue virus E glycoprotein into our 3D reconstructions further suggest that the HCV-LP E1 and E2 proteins form a tetramer (or dimer of heterodimers) that corresponds morphologically and functionally to the flavivirus E homodimer. This first 3D structural analysis of HCV particles offers important insights into the elusive mechanisms of HCV assembly and maturation
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Barca, Patrizio; Giannelli, Marco; Fantacci, Maria Evelina; Caramella, Davide
2018-06-01
Computed tomography (CT) is a useful and widely employed imaging technique, which represents the largest source of population exposure to ionizing radiation in industrialized countries. Adaptive Statistical Iterative Reconstruction (ASIR) is an iterative reconstruction algorithm with the potential to allow reduction of radiation exposure while preserving diagnostic information. The aim of this phantom study was to assess the performance of ASIR, in terms of a number of image quality indices, when different reconstruction blending levels are employed. CT images of the Catphan-504 phantom were reconstructed using conventional filtered back-projection (FBP) and ASIR with reconstruction blending levels of 20, 40, 60, 80, and 100%. Noise, noise power spectrum (NPS), contrast-to-noise ratio (CNR) and modulation transfer function (MTF) were estimated for different scanning parameters and contrast objects. Noise decreased and CNR increased non-linearly up to 50 and 100%, respectively, with increasing blending level of reconstruction. Also, ASIR has proven to modify the NPS curve shape. The MTF of ASIR reconstructed images depended on tube load/contrast and decreased with increasing blending level of reconstruction. In particular, for low radiation exposure and low contrast acquisitions, ASIR showed lower performance than FBP, in terms of spatial resolution for all blending levels of reconstruction. CT image quality varies substantially with the blending level of reconstruction. ASIR has the potential to reduce noise whilst maintaining diagnostic information in low radiation exposure CT imaging. Given the opposite variation of CNR and spatial resolution with the blending level of reconstruction, it is recommended to use an optimal value of this parameter for each specific clinical application.
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Episodic sexual transmission of HIV revealed by molecular phylodynamics.
Directory of Open Access Journals (Sweden)
Fraser Lewis
2008-03-01
Full Text Available The structure of sexual contact networks plays a key role in the epidemiology of sexually transmitted infections, and their reconstruction from interview data has provided valuable insights into the spread of infection. For HIV, the long period of infectivity has made the interpretation of contact networks more difficult, and major discrepancies have been observed between the contact network and the transmission network revealed by viral phylogenetics. The high rate of HIV evolution in principle allows for detailed reconstruction of links between virus from different individuals, but often sampling has been too sparse to describe the structure of the transmission network. The aim of this study was to analyze a high-density sample of an HIV-infected population using recently developed techniques in phylogenetics to infer the short-term dynamics of the epidemic among men who have sex with men (MSM.Sequences of the protease and reverse transcriptase coding regions from 2,126 patients, predominantly MSM, from London were compared: 402 of these showed a close match to at least one other subtype B sequence. Nine large clusters were identified on the basis of genetic distance; all were confirmed by Bayesian Monte Carlo Markov chain (MCMC phylogenetic analysis. Overall, 25% of individuals with a close match with one sequence are linked to 10 or more others. Dated phylogenies of the clusters using a relaxed clock indicated that 65% of the transmissions within clusters took place between 1995 and 2000, and 25% occurred within 6 mo after infection. The likelihood that not all members of the clusters have been identified renders the latter observation conservative.Reconstruction of the HIV transmission network using a dated phylogeny approach has revealed the HIV epidemic among MSM in London to have been episodic, with evidence of multiple clusters of transmissions dating to the late 1990s, a period when HIV prevalence is known to have doubled in this
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Directory of Open Access Journals (Sweden)
Saloshna Vandeyar
2014-06-01
Full Text Available The purpose of this study was to explore difficulties and challenges that confront African immigrant teachers as they attempt to reconstruct their professional identities in South African schools. The study was qualitative in nature and utilized narrative inquiry and the case study approach. Data-gathering techniques included a mix of semi-structured interviews, observations, focus group interviews, field notes and researcher journals. Data were analysed using grounded theory and content analysis methods. Findings of the study revealed that immigration status, employment status, attitudes of indigenous learners and holding on to former culture or way of knowing due to lack of induction or mentoring, were impediments to the successful reconstruction of African immigrant teachers' professional identities in South African schools.
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Reconstruction of convex bodies from surface tensors
DEFF Research Database (Denmark)
Kousholt, Astrid; Kiderlen, Markus
We present two algorithms for reconstruction of the shape of convex bodies in the two-dimensional Euclidean space. The first reconstruction algorithm requires knowledge of the exact surface tensors of a convex body up to rank s for some natural number s. The second algorithm uses harmonic intrinsic...... volumes which are certain values of the surface tensors and allows for noisy measurements. From a generalized version of Wirtinger's inequality, we derive stability results that are utilized to ensure consistency of both reconstruction procedures. Consistency of the reconstruction procedure based...
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Han, Fei; Zhang, Peng; Sun, Yaying; Lin, Chao; Zhao, Peng; Chen, Jiwu
2015-01-01
Hamstring tendon autograft is a routine graft for anterior cruciate ligament (ACL) reconstruction. However, ways of improving the healing between the tendon and bone is often overlooked in clinical practice. This issue can be addressed by using a biomimetic scaffold. Herein, a biomimetic nanofiber membrane of polycaprolactone/nanohydroxyapatite/collagen (PCL/nHAp/Col) is fabricated that mimics the composition of native bone tissue for promoting tendon-bone healing. This membrane has good cytocompatibility, allowing for osteoblast cell adhesion and growth and bone formation. As a result, MC3T3 cells reveal a higher mineralization level in PCL/nHAp/Col membrane compared with PCL membrane alone. Further in vivo studies in ACL reconstruction in a rabbit model shows that PCL/nHAp/Col-wrapped tendon may afford superior tissue integration to nonwrapped tendon in the interface between the tendon and host bone as well as improved mechanical strength. This study shows that PCL/nHAp/Col nanofiber membrane wrapping of autologous tendon is effective for improving tendon healing with host bone in ACL reconstruction.
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Directory of Open Access Journals (Sweden)
Gabriele Guidi
2017-09-01
Full Text Available This paper presents the methodological approach and the actual workflow for creating the 3D digital reconstruction in time of the ancient Roman Circus of Milan, which is presently covered completely by the urban fabric of the modern city. The diachronic reconstruction is based on a proper mix of quantitative data originated by current 3D surveys and historical sources, such as ancient maps, drawings, archaeological reports, restrictions decrees, and old photographs. When possible, such heterogeneous sources have been georeferenced and stored in a GIS system. In this way the sources have been analyzed in depth, allowing the deduction of geometrical information not explicitly revealed by the material available. A reliable reconstruction of the area in different historical periods has been therefore hypothesized. This research has been carried on in the framework of the project Cultural Heritage Through Time—CHT2, funded by the Joint Programming Initiative on Cultural Heritage (JPI-CH, supported by the Italian Ministry for Cultural Heritage (MiBACT, the Italian Ministry for University and Research (MIUR, and the European Commission.
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Lanciano, Tiziana; Curci, Antonietta; Semin, Gun R
2010-07-01
Flashbulb memories (FBMs) are vivid and detailed memories of the reception context of a public emotional event. Brown and Kulik (1977) introduced the label FBM to suggest the idea that individuals are able to preserve knowledge of an event in an indiscriminate way, in analogy with a photograph that preserves all details of a scene. Research work on FBMs has primarily been conducted using a naturalistic approach in order to explore the role of the emotional and reconstructive factors on FBM formation and maintenance. Nevertheless, these studies lack a sufficient control on the factors that might intervene in the process of FBM formation. The contribution of the present studies is addressed to experimentally investigating the role of emotional and reconstructive factors on emotionally charged memories, specifically on FBMs. Paralleling FBM findings, the two studies revealed that simply being in an emotional state allows people to remember all available information, such as irrelevant and unrelated details. Furthermore, the resulting memories are affected by reconstructive processes so that they are not as accurate as their richness of details would suggest.
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EIT image reconstruction with four dimensional regularization.
Dai, Tao; Soleimani, Manuchehr; Adler, Andy
2008-09-01
Electrical impedance tomography (EIT) reconstructs internal impedance images of the body from electrical measurements on body surface. The temporal resolution of EIT data can be very high, although the spatial resolution of the images is relatively low. Most EIT reconstruction algorithms calculate images from data frames independently, although data are actually highly correlated especially in high speed EIT systems. This paper proposes a 4-D EIT image reconstruction for functional EIT. The new approach is developed to directly use prior models of the temporal correlations among images and 3-D spatial correlations among image elements. A fast algorithm is also developed to reconstruct the regularized images. Image reconstruction is posed in terms of an augmented image and measurement vector which are concatenated from a specific number of previous and future frames. The reconstruction is then based on an augmented regularization matrix which reflects the a priori constraints on temporal and 3-D spatial correlations of image elements. A temporal factor reflecting the relative strength of the image correlation is objectively calculated from measurement data. Results show that image reconstruction models which account for inter-element correlations, in both space and time, show improved resolution and noise performance, in comparison to simpler image models.
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Fully 3D GPU PET reconstruction
Energy Technology Data Exchange (ETDEWEB)
Herraiz, J.L., E-mail: joaquin@nuclear.fis.ucm.es [Grupo de Fisica Nuclear, Departmento Fisica Atomica, Molecular y Nuclear, Universidad Complutense de Madrid (Spain); Espana, S. [Department of Radiation Oncology, Massachusetts General Hospital and Harvard Medical School, Boston, MA (United States); Cal-Gonzalez, J. [Grupo de Fisica Nuclear, Departmento Fisica Atomica, Molecular y Nuclear, Universidad Complutense de Madrid (Spain); Vaquero, J.J. [Departmento de Bioingenieria e Ingenieria Espacial, Universidad Carlos III, Madrid (Spain); Desco, M. [Departmento de Bioingenieria e Ingenieria Espacial, Universidad Carlos III, Madrid (Spain); Unidad de Medicina y Cirugia Experimental, Hospital General Universitario Gregorio Maranon, Madrid (Spain); Udias, J.M. [Grupo de Fisica Nuclear, Departmento Fisica Atomica, Molecular y Nuclear, Universidad Complutense de Madrid (Spain)
2011-08-21
Fully 3D iterative tomographic image reconstruction is computationally very demanding. Graphics Processing Unit (GPU) has been proposed for many years as potential accelerators in complex scientific problems, but it has not been used until the recent advances in the programmability of GPUs that the best available reconstruction codes have started to be implemented to be run on GPUs. This work presents a GPU-based fully 3D PET iterative reconstruction software. This new code may reconstruct sinogram data from several commercially available PET scanners. The most important and time-consuming parts of the code, the forward and backward projection operations, are based on an accurate model of the scanner obtained with the Monte Carlo code PeneloPET and they have been massively parallelized on the GPU. For the PET scanners considered, the GPU-based code is more than 70 times faster than a similar code running on a single core of a fast CPU, obtaining in both cases the same images. The code has been designed to be easily adapted to reconstruct sinograms from any other PET scanner, including scanner prototypes.
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Fully 3D GPU PET reconstruction
International Nuclear Information System (INIS)
Herraiz, J.L.; Espana, S.; Cal-Gonzalez, J.; Vaquero, J.J.; Desco, M.; Udias, J.M.
2011-01-01
Fully 3D iterative tomographic image reconstruction is computationally very demanding. Graphics Processing Unit (GPU) has been proposed for many years as potential accelerators in complex scientific problems, but it has not been used until the recent advances in the programmability of GPUs that the best available reconstruction codes have started to be implemented to be run on GPUs. This work presents a GPU-based fully 3D PET iterative reconstruction software. This new code may reconstruct sinogram data from several commercially available PET scanners. The most important and time-consuming parts of the code, the forward and backward projection operations, are based on an accurate model of the scanner obtained with the Monte Carlo code PeneloPET and they have been massively parallelized on the GPU. For the PET scanners considered, the GPU-based code is more than 70 times faster than a similar code running on a single core of a fast CPU, obtaining in both cases the same images. The code has been designed to be easily adapted to reconstruct sinograms from any other PET scanner, including scanner prototypes.
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Org.Lcsim: Event Reconstruction in Java
International Nuclear Information System (INIS)
Graf, Norman
2011-01-01
Maximizing the physics performance of detectors being designed for the International Linear Collider, while remaining sensitive to cost constraints, requires a powerful, efficient, and flexible simulation, reconstruction and analysis environment to study the capabilities of a large number of different detector designs. The preparation of Letters Of Intent for the International Linear Collider involved the detailed study of dozens of detector options, layouts and readout technologies; the final physics benchmarking studies required the reconstruction and analysis of hundreds of millions of events. We describe the Java-based software toolkit (org.lcsim) which was used for full event reconstruction and analysis. The components are fully modular and are available for tasks from digitization of tracking detector signals through to cluster finding, pattern recognition, track-fitting, calorimeter clustering, individual particle reconstruction, jet-finding, and analysis. The detector is defined by the same xml input files used for the detector response simulation, ensuring the simulation and reconstruction geometries are always commensurate by construction. We discuss the architecture as well as the performance.
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Reconstruction of the midface and maxilla.
Dalgorf, Dustin; Higgins, Kevin
2008-08-01
To review the current classification systems and reconstructive options available for restoration of maxillectomy defects. Defects involving the midface can have a great functional and aesthetic impact on the patient. Adequate restoration of the complex three-dimensional maxillary structure is required to replace form and function of the native tissue. An in-depth discussion of appropriate recipient vessel selection and reconstructive options are included in this article. The superficial temporal vessel system is presented as a reliable anastomosis site for restoration of midfacial defects. In addition, the complications of vein grafting, arteriovenous fistula loops and alternative recipient vessels sites are addressed to manage the challenge of the vessel-depleted neck. The current indications, advantages and disadvantages of local, regional and free-flap reconstructive options available for maxillectomy defects are highlighted in order to aid the surgeon in appropriate flap selection. A myriad of reconstructive options are available to restore maxillectomy defects. The surgeon must consider each defect and the needs of the individual patient when choosing the best suited reconstructive technique.
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Multiscale study on stochastic reconstructions of shale samples
Lili, J.; Lin, M.; Jiang, W. B.
2016-12-01
Shales are known to have multiscale pore systems, composed of macroscale fractures, micropores, and nanoscale pores within gas or oil-producing organic material. Also, shales are fissile and laminated, and the heterogeneity in horizontal is quite different from that in vertical. Stochastic reconstructions are extremely useful in situations where three-dimensional information is costly and time consuming. Thus the purpose of our paper is to reconstruct stochastically equiprobable 3D models containing information from several scales. In this paper, macroscale and microscale images of shale structure in the Lower Silurian Longmaxi are obtained by X-ray microtomography and nanoscale images are obtained by scanning electron microscopy. Each image is representative for all given scales and phases. Especially, the macroscale is four times coarser than the microscale, which in turn is four times lower in resolution than the nanoscale image. Secondly, the cross correlation-based simulation method (CCSIM) and the three-step sampling method are combined together to generate stochastic reconstructions for each scale. It is important to point out that the boundary points of pore and matrix are selected based on multiple-point connectivity function in the sampling process, and thus the characteristics of the reconstructed image can be controlled indirectly. Thirdly, all images with the same resolution are developed through downscaling and upscaling by interpolation, and then we merge multiscale categorical spatial data into a single 3D image with predefined resolution (the microscale image). 30 realizations using the given images and the proposed method are generated. The result reveals that the proposed method is capable of preserving the multiscale pore structure, both vertically and horizontally, which is necessary for accurate permeability prediction. The variogram curves and pore-size distribution for both original 3D sample and the generated 3D realizations are compared
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Rosson, Gedge D; Shridharani, Sachin M; Magarakis, Michael; Manahan, Michele A; Basdag, Basak; Gilson, Marta M; Pusic, Andrea L
2013-05-01
Women undergo breast reconstruction at different time-points in their cancer care; knowing patients' preoperative quality of life (QoL) is critical in the overall care of the patient with breast cancer. Our objective was to describe presurgical QoL among women undergoing immediate, delayed, or major revision breast reconstructive surgery at our institution. From March 2008 to February 2009, we administered preoperative BREAST-Q questionnaires to women who presented to our institution for breast reconstruction. Univariate and multivariate analyses were performed to compare patient cohorts across multiple QoL domains including body image, physical well-being, psychosocial well-being, and sexual well-being. Of the 231 patients who presented for preoperative consultation, 176 returned the questionnaire (response rate 76%; 117 from the immediate, 21 from the delayed, and 32 from the major revision reconstruction groups, plus 6 mixed or unknown). The three groups differed significantly (P < 0.05) across four of the six domains: body image (satisfaction with breasts), psychosocial well-being, sexual well-being, and physical well-being of the chest and upper body. The immediate reconstruction group had higher (better) scores than the delayed reconstruction group, which had higher (better) scores than the major revision group. These data suggest that women presenting for breast reconstruction at different stages of reconstruction have different baseline QoL. Such data may help us better understand patient selection, education, and expectations, and may lead to improved patient-surgeon communication. Copyright © 2013 Wiley Periodicals, Inc.
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Reconstruction of convex bodies from surface tensors
DEFF Research Database (Denmark)
Kousholt, Astrid; Kiderlen, Markus
2016-01-01
We present two algorithms for reconstruction of the shape of convex bodies in the two-dimensional Euclidean space. The first reconstruction algorithm requires knowledge of the exact surface tensors of a convex body up to rank s for some natural number s. When only measurements subject to noise...... of surface tensors are available for reconstruction, we recommend to use certain values of the surface tensors, namely harmonic intrinsic volumes instead of the surface tensors evaluated at the standard basis. The second algorithm we present is based on harmonic intrinsic volumes and allows for noisy...... measurements. From a generalized version of Wirtinger's inequality, we derive stability results that are utilized to ensure consistency of both reconstruction procedures. Consistency of the reconstruction procedure based on measurements subject to noise is established under certain assumptions on the noise...
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Schepers, Rutger H.; Kraeima, Joep; Vissink, Arjan; Lahoda, Lars U.; Roodenburg, Jan L. N.; Reintsema, Harry; Raghoebar, Gerry M.; Witjes, Max J.
Background: We compared the pre-operative 3D-surgical plan with the surgical outcome of complex two-stage secondary reconstruction of maxillofacial defects using inserted implants in the prefabricated fibula graft. Methods: Eleven reconstructions of maxillofacial defects with prefabricated fibulas
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Orbital floor reconstruction with free flaps after maxillectomy.
Sampathirao, Leela Mohan C S R; Thankappan, Krishnakumar; Duraisamy, Sriprakash; Hedne, Naveen; Sharma, Mohit; Mathew, Jimmy; Iyer, Subramania
2013-06-01
Background The purpose of this study is to evaluate the outcome of orbital floor reconstruction with free flaps after maxillectomy. Methods This was a retrospective analysis of 34 consecutive patients who underwent maxillectomy with orbital floor removal for malignancies, reconstructed with free flaps. A cross-sectional survey to assess the functional and esthetic outcome was done in 28 patients who were alive and disease-free, with a minimum of 6 months of follow-up. Results Twenty-six patients had bony reconstruction, and eight had soft tissue reconstruction. Free fibula flap was the commonest flap used (n = 14). Visual acuity was normal in 86%. Eye movements were normal in 92%. Abnormal globe position resulted in nine patients. Esthetic satisfaction was good in 19 patients (68%). Though there was no statistically significant difference in outcome of visual acuity, eye movement, and patient esthetic satisfaction between patients with bony and soft tissue reconstruction, more patients without bony reconstruction had abnormal globe position (p = 0.040). Conclusion Free tissue transfer has improved the results of orbital floor reconstruction after total maxillectomy, preserving the eye. Good functional and esthetic outcome was achieved. Though our study favors a bony orbital reconstruction, a larger study with adequate power and equal distribution of patients among the groups would be needed to determine this. Free fibula flap remains the commonest choice when a bony reconstruction is contemplated.
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Directory of Open Access Journals (Sweden)
Paulo Palma
2010-04-01
Full Text Available PURPOSE: This prospective study was performed to achieve visualization of the reestablishment of anatomy after reconstructive surgery in the different pelvic compartments with non-absorbable radiopaque meshes, providing valuable anatomic information for surgeons implanting meshes. MATERIALS AND METHODS: A total of 30 female patients with stress urinary incontinence (SUI, anterior and posterior vaginal wall prolapse, or both underwent surgical repair using radiopaque meshes after written informed consent. Patients with SUI underwent five different surgeries. Patients with anterior vaginal prolapse underwent a procedure using a combined pre-pubic and transobturator mesh, and those with posterior vaginal prolapse underwent posterior slingplasty. Three-dimensional reconstruction using helical CT was performed four weeks postoperatively. RESULTS: In all cases, the mesh was clearly visualized. Transobturator slings were shown at the midurethra, and the anchoring tails perforated the obturator foramen at the safety region. Mini-slings were in the proper place, and computed angiography revealed that the anchoring system was away from the obturator vessels. In patients undergoing procedure for anterior vaginal prolapse, both pre-pubic armpit and obturator slings were clearly seen and the mesh was in the proper position, supporting the bladder base and occluding the distal part of the urogenital hiatus. Transcoccygeal sacropexy revealed indirectly a well-supported "neo rectovaginal fascia" and the anchoring tails at the level of ischial spines. CONCLUSION: Three-dimensional helical tomography images of the female pelvis using radiopaque meshes have a potential role in improving our understanding of pelvic floor reconstructive surgeries. These radiopaque meshes might be the basis of a new investigative methodology.
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Simultaneous maximum a posteriori longitudinal PET image reconstruction
Ellis, Sam; Reader, Andrew J.
2017-09-01
Positron emission tomography (PET) is frequently used to monitor functional changes that occur over extended time scales, for example in longitudinal oncology PET protocols that include routine clinical follow-up scans to assess the efficacy of a course of treatment. In these contexts PET datasets are currently reconstructed into images using single-dataset reconstruction methods. Inspired by recently proposed joint PET-MR reconstruction methods, we propose to reconstruct longitudinal datasets simultaneously by using a joint penalty term in order to exploit the high degree of similarity between longitudinal images. We achieved this by penalising voxel-wise differences between pairs of longitudinal PET images in a one-step-late maximum a posteriori (MAP) fashion, resulting in the MAP simultaneous longitudinal reconstruction (SLR) method. The proposed method reduced reconstruction errors and visually improved images relative to standard maximum likelihood expectation-maximisation (ML-EM) in simulated 2D longitudinal brain tumour scans. In reconstructions of split real 3D data with inserted simulated tumours, noise across images reconstructed with MAP-SLR was reduced to levels equivalent to doubling the number of detected counts when using ML-EM. Furthermore, quantification of tumour activities was largely preserved over a variety of longitudinal tumour changes, including changes in size and activity, with larger changes inducing larger biases relative to standard ML-EM reconstructions. Similar improvements were observed for a range of counts levels, demonstrating the robustness of the method when used with a single penalty strength. The results suggest that longitudinal regularisation is a simple but effective method of improving reconstructed PET images without using resolution degrading priors.
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Directory of Open Access Journals (Sweden)
Yongyong Ma
Full Text Available Tree-ring samples from Chinese Pine (Pinus tabulaeformis Carr. that were collected in the Taihe Mountains on the western Loess Plateau, China, were used to analyze the effects of climate and drought on radial growth and to reconstruct the mean April-June Standardized Precipitation Evapotranspiration Index (SPEI during the period 1730-2012 AD. Precipitation positively affected tree growth primarily during wet seasons, while temperature negatively affected tree growth during dry seasons. Tree growth responded positively to SPEI at long time scales most likely because the trees were able to withstand water deficits but lacked a rapid response to drought. The 10-month scale SPEI was chosen for further drought reconstruction. A calibration model for the period 1951-2011 explained 51% of the variance in the modeled SPEI data. Our SPEI reconstruction revealed long-term patterns of drought variability and captured some significant drought events, including the severe drought of 1928-1930 and the clear drying trend since the 1950s which were widespread across northern China. The reconstruction was also consistent with two other reconstructions on the western Loess Plateau at both interannual and decadal scales. The reconstructed SPEI series showed synchronous variations with the drought/wetness indices and spatial correlation analyses indicated that this reconstruction could be representative of large-scale SPEI variability in northern China. Period analysis discovered 128-year, 25-year, 2.62-year, 2.36-year, and 2.04-year cycles in this reconstruction. The time-dependency of the growth response to drought should be considered in further studies of the community dynamics. The SPEI reconstruction improves the sparse network of long-term climate records for an enhanced understanding of climatic variability on the western Loess Plateau, China.
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Ma, Yongyong; Liu, Yu; Song, Huiming; Sun, Junyan; Lei, Ying; Wang, Yanchao
2015-01-01
Tree-ring samples from Chinese Pine (Pinus tabulaeformis Carr.) that were collected in the Taihe Mountains on the western Loess Plateau, China, were used to analyze the effects of climate and drought on radial growth and to reconstruct the mean April-June Standardized Precipitation Evapotranspiration Index (SPEI) during the period 1730–2012 AD. Precipitation positively affected tree growth primarily during wet seasons, while temperature negatively affected tree growth during dry seasons. Tree growth responded positively to SPEI at long time scales most likely because the trees were able to withstand water deficits but lacked a rapid response to drought. The 10-month scale SPEI was chosen for further drought reconstruction. A calibration model for the period 1951–2011 explained 51% of the variance in the modeled SPEI data. Our SPEI reconstruction revealed long-term patterns of drought variability and captured some significant drought events, including the severe drought of 1928–1930 and the clear drying trend since the 1950s which were widespread across northern China. The reconstruction was also consistent with two other reconstructions on the western Loess Plateau at both interannual and decadal scales. The reconstructed SPEI series showed synchronous variations with the drought/wetness indices and spatial correlation analyses indicated that this reconstruction could be representative of large-scale SPEI variability in northern China. Period analysis discovered 128-year, 25-year, 2.62-year, 2.36-year, and 2.04-year cycles in this reconstruction. The time-dependency of the growth response to drought should be considered in further studies of the community dynamics. The SPEI reconstruction improves the sparse network of long-term climate records for an enhanced understanding of climatic variability on the western Loess Plateau, China. PMID:26207621
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Baghdadi, Yaser M K; Morrey, Bernard F; O'Driscoll, Shawn W; Steinmann, Scott P; Sanchez-Sotelo, Joaquin
2014-07-01
Primary reconstruction of the lateral collateral ligament complex (LCLC) using graft tissue restores elbow stability in many, but not all, elbows with acute or chronic posterolateral rotatory instability (PLRI). Revision reconstruction using a tendon allograft is occasionally considered for persistent PLRI, but the outcome of revision ligament reconstruction in this setting is largely unknown. We determined whether revision allograft ligament reconstruction can (1) restore the stability and (2) result in improved elbow scores for patients with persistent PLRI of the elbow after a previous failed primary reconstructive attempt and in the context of the diverse pathology being addressed. Between 2001 and 2011, 160 surgical elbow procedures were performed at our institution for the LCLC reconstruction using allograft tissue. Only patients undergoing revision allograft reconstruction of the LCLC for persistent PLRI with a previous failed primary reconstructive attempt using graft tissue and at least I year of followup were included in the study. Eleven patients (11 elbows) fulfilled our inclusion criteria and formed our study cohort. The cohort consisted of six female patients and five male patients. The mean age at the time of revision surgery was 36 years (range, 14-59 years). The revision allograft reconstruction was carried out after a mean of 3 years (range, 2.5 months to 9 years) from a failed attempted reconstruction of the LCLC. Osseous deficiency to some extent was identified in the preoperative radiographs of eight elbows. Mean followup was 5 years (range, 1-12 years). Revision allograft reconstruction of the LCLC restored elbow stability in eight of the 11 elbows; two of the three elbows with persistent instability were operated on a third time (at 6 and 7 months after allograft revision reconstruction). For elbows with no persistent instability, the mean Mayo Elbow Performance Score at most recent followup was 83 points (range, 60-100 points), and
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Structure Assisted Compressed Sensing Reconstruction of Undersampled AFM Images
DEFF Research Database (Denmark)
Oxvig, Christian Schou; Arildsen, Thomas; Larsen, Torben
2017-01-01
reconstruction algorithms that enables the use of our proposed structure model in the reconstruction process. Through a large set of reconstructions, the general reconstruction capability improvement achievable using our structured model is shown both quantitatively and qualitatively. Specifically, our...
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Lupo, Karen D.; Schmitt, Dave N.; Kiahtipes, Christopher A.; Ndanga, Jean-Paul; Young, D. Craig; Simiti, Bernard
2015-01-01
An ongoing question in paleoenvironmental reconstructions of the central African rainforest concerns the role that prehistoric metallurgy played in shaping forest vegetation. Here we report evidence of intensive iron-ore mining and smelting in forested regions of the northern Congo Basin dating to the late Holocene. Volumetric estimates on extracted iron-ore and associated slag mounds from prehistoric sites in the southern Central African Republic suggest large-scale iron production on par with other archaeological and historically-known iron fabrication areas. These data document the first evidence of intensive iron mining and production spanning approximately 90 years prior to colonial occupation (circa AD 1889) and during an interval of time that is poorly represented in the archaeological record. Additional site areas pre-dating these remains by 3-4 centuries reflect an earlier period of iron production on a smaller scale. Microbotanical evidence from a sediment core collected from an adjacent riparian trap shows a reduction in shade-demanding trees in concert with an increase in light-demanding species spanning the time interval associated with iron intensification. This shift occurs during the same time interval when many portions of the Central African witnessed forest transgressions associated with a return to moister and more humid conditions beginning 500-100 years ago. Although data presented here do not demonstrate that iron smelting activities caused widespread vegetation change in Central Africa, we argue that intense mining and smelting can have localized and potentially regional impacts on vegetation communities. These data further demonstrate the high value of pairing archeological and paleoenvironmental analyses to reconstruct regional-scale forest histories. PMID:26161540
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Verschuren, Dirk; Eggermont, Hilde
2006-08-01
Chironomid paleoecology in north-temperate regions has made tremendous progress over the past decade, but studies in tropical and Southern Hemisphere regions remain relatively scarce. Reasons for this imbalance are (1) incomplete taxonomic knowledge of chironomid faunas outside Europe and North America, (2) a scarcity of ecological data on local species and genera that might confer bio-indicator value to them, and (3) logistic difficulties hampering the lake surveying necessary to develop paleoenvironmental calibration data sets. Thus far, most chironomid paleoecology in tropical and Southern Hemisphere regions has relied on an indicator-species approach, combining autecological information on local species of which larval morphology is known with the traditional ecological typology of chironomid genera transferred from the Holarctic region. This paper reviews work accomplished to date in tropical and temperate South America, Australia, Africa, and New Zealand, including studies on various families of non-chironomid Diptera with diagnostic fossils. Research has focused mostly on late-Glacial and Holocene climate reconstruction, less on tracing past human disturbance of aquatic ecosystems and their drainage basins. Quantitative chironomid-based paleoenvironmental reconstruction has so far been done only in Australia and Africa. These studies compensated for the lack of traditional surface-sediment calibration data sets, nowadays often the main source of quantitative information on species ecological optima and tolerances, by maximally exploiting archival species-distribution data based on live collections of adult and/or larval midges. This stimulated efforts to achieve trustworthy species-level identification of fossil chironomid remains, and, as a result, the taxonomic resolution of paleoecological studies in Australia and Africa is higher on average than that achieved in European and North American studies.
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Reconstruction of electric systems (ELE)
International Nuclear Information System (INIS)
Kohutovic, P.
2001-01-01
The original design of WWER-230 units consisted of a single common system EEPS (essential electric power supply system) per unit. The establishment of redundancy 2 x 100% EEPS was a global task. The task was started during the 'Small reconstruction' - MR V1, continued in 'Gradual reconstruction' and finished in the year 2000. (author)
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Mapping and historical reconstruction of the great Mexican 22 June 1932 tsunami
Directory of Open Access Journals (Sweden)
N. Corona
2012-05-01
Full Text Available At 07:00 h (UTC-6 on 22 June 1932, a Ms = 6.9 earthquake shocked the coasts of Colima and Jalisco. Five minutes later a tsunami arrived at the coast. It almost completely destroyed the town of Cuyutlán, Colima, causing the deaths of 50 people and leaving about 1200 injured. In this study, newspaper reports and technical reports are reviewed, as well as survivors' testimonials. The physical characteristics (mean sea level at the time, time of arrival, sea retreat, and inundation distribution and the tsunami effects (number of victims, injuries, affected buildings have been reconstructed and mapped. The interpretation of historical data allowed us to determine the intensity of the tsunami and to reveal the tsunamigenic source. This study emphasizes the relevance of historical analysis, including survivor's testimonies, in the reconstruction of tsunamis that lack instrumental data. The results of this study are relevant to paleotsunami studies and tsunami related hazard planning.
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Kawashima, Daisuke; Kawano, Kenji
2017-09-01
Although Japan has a high suicide rate, there is insufficient research on the experiences of suicide-bereaved individuals. We investigated the qualitative aspects of the meaning reconstruction process after a loss to suicide. We conducted a life-story interview using open-ended questions with one middle-aged Japanese woman who lost her son to suicide. We used a narrative approach to transcribe and code the participant's narratives for analysis. The analysis revealed three meaning groups that structured the participant's reactions to the suicide: making sense of her son's death and life, relationships with other people, and reconstruction of a bond with the deceased. The belief that death is not an eternal split and that there is a connection between the living and the deceased reduced the pain felt by our participant. Furthermore, the narratives worked as scaffolds in the meaning reconstruction process. We discuss our results in the light of cross-cultural differences in the grieving process.
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Landes, Constantin A; Weichert, Frank; Geis, Philipp; Helga, Fritsch; Wagner, Mathias
2006-03-01
Cleft lip and palate reconstructive surgery requires thorough knowledge of normal and pathological labial, palatal, and velopharyngeal anatomy. This study compared two software algorithms and their 3D virtual anatomical reconstruction because exact 3D micromorphological reconstruction may improve learning, reveal spatial relationships, and provide data for mathematical modeling. Transverse and frontal serial sections of the midface of 18 fetal specimens (11th to 32nd gestational week) were used for two manual segmentation approaches. The first manual segmentation approach used bitmap images and either Windows-based or Mac-based SURFdriver commercial software that allowed manual contour matching, surface generation with average slice thickness, 3D triangulation, and real-time interactive virtual 3D reconstruction viewing. The second manual segmentation approach used tagged image format and platform-independent prototypical SeViSe software developed by one of the authors (F.W.). Distended or compressed structures were dynamically transformed. Registration was automatic but allowed manual correction, such as individual section thickness, surface generation, and interactive virtual 3D real-time viewing. SURFdriver permitted intuitive segmentation, easy manual offset correction, and the reconstruction showed complex spatial relationships in real time. However, frequent software crashes and erroneous landmarks appearing "out of the blue," requiring manual correction, were tedious. Individual section thickness, defined smoothing, and unlimited structure number could not be integrated. The reconstruction remained underdimensioned and not sufficiently accurate for this study's reconstruction problem. SeViSe permitted unlimited structure number, late addition of extra sections, and quantified smoothing and individual slice thickness; however, SeViSe required more elaborate work-up compared to SURFdriver, yet detailed and exact 3D reconstructions were created.
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Optimizing Aesthetic Outcomes in Delayed Breast Reconstruction
Directory of Open Access Journals (Sweden)
Wojciech Dec, MD
2017-08-01
Conclusions:. Optimal aesthetic results can be achieved with: (1 restoration of breast skin envelope with tissue expansion when possible, (2 optimal positioning of a small skin paddle to be later incorporated entirely into a nipple areola reconstruction when adequate breast skin surface area is present, (3 limiting the reconstructed breast mound to 2 skin tones when large area skin resurfacing is required, (4 increasing breast volume by deepithelializing, not discarding, the inferior mastectomy flap skin, (5 eccentric division of abdominal flaps when an immediate and delayed bilateral breast reconstructions are performed simultaneously; and (6 performing second-stage breast reconstruction revisions and fat grafting.
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Tomographic image reconstruction using Artificial Neural Networks
International Nuclear Information System (INIS)
Paschalis, P.; Giokaris, N.D.; Karabarbounis, A.; Loudos, G.K.; Maintas, D.; Papanicolas, C.N.; Spanoudaki, V.; Tsoumpas, Ch.; Stiliaris, E.
2004-01-01
A new image reconstruction technique based on the usage of an Artificial Neural Network (ANN) is presented. The most crucial factor in designing such a reconstruction system is the network architecture and the number of the input projections needed to reconstruct the image. Although the training phase requires a large amount of input samples and a considerable CPU time, the trained network is characterized by simplicity and quick response. The performance of this ANN is tested using several image patterns. It is intended to be used together with a phantom rotating table and the γ-camera of IASA for SPECT image reconstruction
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Jordán-Palomar, Elena Irene; Javierre, Etelvina; Rey-Vasalo, José; Alfaro-Santafé, Víctor; Gómez-Benito, María José
Most pedobarographic studies of microsurgical foot reconstruction have been retrospective. In the present study, we report the results from a prospective pedobarographic study of a patient after microsurgical reconstruction of her foot with a latissimus dorsi flap and a cutaneous paddle, with a 42-month follow-up period. We describe the foot reconstruction plan and the pedobarographic measurements and analyzed its functional outcome. The goal of the present study was to demonstrate that pedobarography could have a role in the treatment of foot reconstruction from a quantitative perspective. The pedobarographic measurements were recorded after the initial coverage surgery and 2 subsequent foot remodeling procedures. A total of 4 pedobarographic measurements and 2 gait analyses were recorded and compared for both the noninvolved foot and the injured foot. Furthermore, the progress of the reconstructed foot was critically evaluated using this method. Both static and dynamic patterns were compared at subsequent follow-up visits after the foot reconstruction. The values and progression of the foot shape, peak foot pressure (kPa), average foot pressure (kPa), total contact surface (cm 2 ), loading time (%), and step time (ms) were recorded. Initially, the pressure distribution of the reconstructed foot showed higher peak values at nonanatomic locations, revealing a greater ulceration risk. Over time, we found an improvement in the shape and values of these factors in the involved foot. To homogenize the pressure distribution and correct the imbalance between the 2 feet, patient-specific insoles were designed and fabricated. In our patient, pedobarography provided an objective, repeatable, and recordable method for the evaluation of the reconstructed foot. Pedobarography can therefore provide valuable insights into the prevention of pressure ulcers and optimization of rehabilitation. Copyright © 2016 American College of Foot and Ankle Surgeons. Published by Elsevier Inc
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Christianson, Monica; Eriksson, Carola
2015-06-01
To explore midwives' perceptions regarding virginity control and hymen 'reconstructions', and how these practices can be debated from a gender perspective. An international group of 266 midwives answered an open-ended question in a Web survey. The great majority came from the Western world, among them, the majority were from Europe. Data were analysed using qualitative content analysis. Three themes emerged: misogynistic practices that cement the gender order, which revealed how the respondents viewed virginity control and hymen 'reconstructions'; raising public awareness and combatting practices that demean women, which were suggested as strategies by which to combat these practices; and promoting agency in women and providing culturally sensitive care, which were considered to improve health care encounters. Virginity control and hymen 'reconstructions' are elements of patriarchy, whereby violence and control are employed to subordinate women. To counter these practices, macro and micro-level activities are needed to expand women's human rights in the private and the public spheres. Political activism, international debates, collaboration between sectors such as health care and law-makers may lead to increased gender equality. A women-centred approach whereby women are empowered with agency will make women more capable of combatting virginity control and hymen 'reconstruction'.
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Miéville, Frédéric A.; Bolard, Gregory; Benkreira, Mohamed; Ayestaran, Paul; Gudinchet, François; Bochud, François; Verdun, Francis R.
2011-03-01
The noise power spectrum (NPS) is the reference metric for understanding the noise content in computed tomography (CT) images. To evaluate the noise properties of clinical multidetector (MDCT) scanners, local 2D and 3D NPSs were computed for different acquisition reconstruction parameters. A 64- and a 128-MDCT scanners were employed. Measurements were performed on a water phantom in axial and helical acquisition modes. CT dose index was identical for both installations. Influence of parameters such as the pitch, the reconstruction filter (soft, standard and bone) and the reconstruction algorithm (filtered-back projection (FBP), adaptive statistical iterative reconstruction (ASIR)) were investigated. Images were also reconstructed in the coronal plane using a reformat process. Then 2D and 3D NPS methods were computed. In axial acquisition mode, the 2D axial NPS showed an important magnitude variation as a function of the z-direction when measured at the phantom center. In helical mode, a directional dependency with lobular shape was observed while the magnitude of the NPS was kept constant. Important effects of the reconstruction filter, pitch and reconstruction algorithm were observed on 3D NPS results for both MDCTs. With ASIR, a reduction of the NPS magnitude and a shift of the NPS peak to the low frequency range were visible. 2D coronal NPS obtained from the reformat images was impacted by the interpolation when compared to 2D coronal NPS obtained from 3D measurements. The noise properties of volume measured in last generation MDCTs was studied using local 3D NPS metric. However, impact of the non-stationarity noise effect may need further investigations.
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... in moderate exercise and recreational activities, or play sports that put less stress on the knees. ACL reconstruction is generally recommended if: You're an athlete and want to continue in your sport, especially if the sport involves jumping, cutting or ...
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Position reconstruction in LUX
Akerib, D. S.; Alsum, S.; Araújo, H. M.; Bai, X.; Bailey, A. J.; Balajthy, J.; Beltrame, P.; Bernard, E. P.; Bernstein, A.; Biesiadzinski, T. P.; Boulton, E. M.; Brás, P.; Byram, D.; Cahn, S. B.; Carmona-Benitez, M. C.; Chan, C.; Currie, A.; Cutter, J. E.; Davison, T. J. R.; Dobi, A.; Druszkiewicz, E.; Edwards, B. N.; Fallon, S. R.; Fan, A.; Fiorucci, S.; Gaitskell, R. J.; Genovesi, J.; Ghag, C.; Gilchriese, M. G. D.; Hall, C. R.; Hanhardt, M.; Haselschwardt, S. J.; Hertel, S. A.; Hogan, D. P.; Horn, M.; Huang, D. Q.; Ignarra, C. M.; Jacobsen, R. G.; Ji, W.; Kamdin, K.; Kazkaz, K.; Khaitan, D.; Knoche, R.; Larsen, N. A.; Lenardo, B. G.; Lesko, K. T.; Lindote, A.; Lopes, M. I.; Manalaysay, A.; Mannino, R. L.; Marzioni, M. F.; McKinsey, D. N.; Mei, D.-M.; Mock, J.; Moongweluwan, M.; Morad, J. A.; Murphy, A. St. J.; Nehrkorn, C.; Nelson, H. N.; Neves, F.; O'Sullivan, K.; Oliver-Mallory, K. C.; Palladino, K. J.; Pease, E. K.; Rhyne, C.; Shaw, S.; Shutt, T. A.; Silva, C.; Solmaz, M.; Solovov, V. N.; Sorensen, P.; Sumner, T. J.; Szydagis, M.; Taylor, D. J.; Taylor, W. C.; Tennyson, B. P.; Terman, P. A.; Tiedt, D. R.; To, W. H.; Tripathi, M.; Tvrznikova, L.; Uvarov, S.; Velan, V.; Verbus, J. R.; Webb, R. C.; White, J. T.; Whitis, T. J.; Witherell, M. S.; Wolfs, F. L. H.; Xu, J.; Yazdani, K.; Young, S. K.; Zhang, C.
2018-02-01
The (x, y) position reconstruction method used in the analysis of the complete exposure of the Large Underground Xenon (LUX) experiment is presented. The algorithm is based on a statistical test that makes use of an iterative method to recover the photomultiplier tube (PMT) light response directly from the calibration data. The light response functions make use of a two dimensional functional form to account for the photons reflected on the inner walls of the detector. To increase the resolution for small pulses, a photon counting technique was employed to describe the response of the PMTs. The reconstruction was assessed with calibration data including 83mKr (releasing a total energy of 41.5 keV) and 3H (β- with Q = 18.6 keV) decays, and a deuterium-deuterium (D-D) neutron beam (2.45 MeV) . Within the detector's fiducial volume, the reconstruction has achieved an (x, y) position uncertainty of σ = 0.82 cm and σ = 0.17 cm for events of only 200 and 4,000 detected electroluminescence photons respectively. Such signals are associated with electron recoils of energies ~0.25 keV and ~10 keV, respectively. The reconstructed position of the smallest events with a single electron emitted from the liquid surface (22 detected photons) has a horizontal (x, y) uncertainty of 2.13 cm.
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Reconstructing biochemical pathways from time course data.
Srividhya, Jeyaraman; Crampin, Edmund J; McSharry, Patrick E; Schnell, Santiago
2007-03-01
Time series data on biochemical reactions reveal transient behavior, away from chemical equilibrium, and contain information on the dynamic interactions among reacting components. However, this information can be difficult to extract using conventional analysis techniques. We present a new method to infer biochemical pathway mechanisms from time course data using a global nonlinear modeling technique to identify the elementary reaction steps which constitute the pathway. The method involves the generation of a complete dictionary of polynomial basis functions based on the law of mass action. Using these basis functions, there are two approaches to model construction, namely the general to specific and the specific to general approach. We demonstrate that our new methodology reconstructs the chemical reaction steps and connectivity of the glycolytic pathway of Lactococcus lactis from time course experimental data.
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Vertex Reconstruction for AEGIS’ FACT Detector
Themistokleous, Neofytos
2017-01-01
My project dealt with the development of a vertex reconstruction technique to discriminate antihydrogen from background signals in the AEGIS apparatus. It involved the creation of a Toy Monte-Carlo to simulate particle annihilation events, and a vertex reconstruction utility based on the Bayesian theory of probability. The first results based on 107 generated events with single track in the detector are encouraging. For such events, the algorithm can reconstruct the z-coordinate accurately , while for the r-coordinate the result is less accurate.
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Advanced reconstruction algorithms for electron tomography: From comparison to combination
Energy Technology Data Exchange (ETDEWEB)
Goris, B. [EMAT, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium); Roelandts, T. [Vision Lab, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk (Belgium); Batenburg, K.J. [Vision Lab, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk (Belgium); Centrum Wiskunde and Informatica, Science Park 123, NL-1098XG Amsterdam (Netherlands); Heidari Mezerji, H. [EMAT, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium); Bals, S., E-mail: sara.bals@ua.ac.be [EMAT, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium)
2013-04-15
In this work, the simultaneous iterative reconstruction technique (SIRT), the total variation minimization (TVM) reconstruction technique and the discrete algebraic reconstruction technique (DART) for electron tomography are compared and the advantages and disadvantages are discussed. Furthermore, we describe how the result of a three dimensional (3D) reconstruction based on TVM can provide objective information that is needed as the input for a DART reconstruction. This approach results in a tomographic reconstruction of which the segmentation is carried out in an objective manner. - Highlights: ► A comparative study between different reconstruction algorithms for tomography is performed. ► Reconstruction algorithms that uses prior knowledge about the specimen have a superior result. ► One reconstruction algorithm can provide the prior knowledge for a second algorithm.
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Elective reconstruction of thoracoabdominal aortic aneurysm type IV by transabdominal approach
Directory of Open Access Journals (Sweden)
Marjanović Ivan
2012-01-01
Full Text Available Introduction. Thoracoabdominal aortic aneurysm (TAAA type IV represents an aortic dilatation from the level of the diaphragmatic hiatus to the iliac arteries branches, including visceral branches of the aorta. In the traditional procedure of TAAA type IV repair, the body is opened using thoractomy and laparotomy in order to provide adequate exposure of the descending thoracic and abdominal aorta for safe aortic reconstruction. Case report. We reported a 71-yearold man with elective reconstruction of the TAAA type IV performed by transabdominal approach. Computed tomography scans angiography revealed a TAAA type IV with diameter of 62 mm in the region of celiac trunk and superior mesenteric artery branching, and the largest diameter of 75 mm in the infrarenal aortic level. The patient comorbidity included a chronic obstructive pulmonary disease and hypertension, therefore he was treated for a prolonged period. In preparation for the planned aortic reconstruction asymptomatic carotid disease (occlusion of the left internal carotid artery and subtotal stenosis of the right internal carotid artery was diagnosed. Within the same intervention percutaneous transluminal angioplasty with stent placement in right internal carotid artery was made. In general, under endotracheal anesthesia and epidural analgesia, with transabdominal approach performed aortic reconstruction with tubular dakron graft 24 mm were, and reimplantation of visceral aortic branches into the graft performed. Postoperative course was uneventful, and the patient was discharged on the postoperative day 17. Control computed tomography scan angiography performed three months after the operation showed vascular state of the patient to be in order. Conclusion. Complete transabdominal approach to TAAA type IV represents an appropriate substitute for thoracoabdominal approach, without compromising safety of the patient. This approach is less traumatic, especially in patients with impaired
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Upper-limb kinematic reconstruction during stroke robot-aided therapy.
Papaleo, E; Zollo, L; Garcia-Aracil, N; Badesa, F J; Morales, R; Mazzoleni, S; Sterzi, S; Guglielmelli, E
2015-09-01
The paper proposes a novel method for an accurate and unobtrusive reconstruction of the upper-limb kinematics of stroke patients during robot-aided rehabilitation tasks with end-effector machines. The method is based on a robust analytic procedure for inverse kinematics that simply uses, in addition to hand pose data provided by the robot, upper arm acceleration measurements for computing a constraint on elbow position; it is exploited for task space augmentation. The proposed method can enable in-depth comprehension of planning strategy of stroke patients in the joint space and, consequently, allow developing therapies tailored for their residual motor capabilities. The experimental validation has a twofold purpose: (1) a comparative analysis with an optoelectronic motion capturing system is used to assess the method capability to reconstruct joint motion; (2) the application of the method to healthy and stroke subjects during circle-drawing tasks with InMotion2 robot is used to evaluate its efficacy in discriminating stroke from healthy behavior. The experimental results have shown that arm angles are reconstructed with a RMSE of 8.3 × 10(-3) rad. Moreover, the comparison between healthy and stroke subjects has revealed different features in the joint space in terms of mean values and standard deviations, which also allow assessing inter- and intra-subject variability. The findings of this study contribute to the investigation of motor performance in the joint space and Cartesian space of stroke patients undergoing robot-aided therapy, thus allowing: (1) evaluating the outcomes of the therapeutic approach, (2) re-planning the robotic treatment based on patient needs, and (3) understanding pathology-related motor strategies.
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International Nuclear Information System (INIS)
Kubota, Manabu; Ushioda, Kohsaku; Miyamoto, Goro; Furuhara, Tadashi
2016-01-01
The recrystallization behavior of hot-deformed austenite of a 0.55% C steel at 800 °C was investigated by a method of reconstructing the parent austenite orientation map from an electron backscattering diffraction orientation map of lath martensite. Recrystallized austenite grains were clearly distinguished from un-recrystallized austenite grains. Very good correlation was confirmed between the static recrystallization behavior investigated mechanically by double-hit compression tests and the change in austenite microstructure evaluated by the reconstruction method. The recrystallization behavior of hot-deformed 0.55% C steel at 800 °C is directly revealed and it was observed that by addition of 0.1% V the recrystallization was significantly retarded.
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Extended Hemi-Hepatectomy with Portal Vein Reconstruction in a Patient with Situs Ambiguous
Directory of Open Access Journals (Sweden)
Keishi Sugimachi
2008-03-01
Full Text Available We report a case of far-advanced hepatocellular carcinoma (HCC with situs ambiguous, complex visceral and vascular anomalies, who was successfully managed by extended hemi-hepatectomy. A 67-year-old man was referred to our hospital with a large liver mass. Abdominal ultrasonography, computed tomography and angiography revealed HCC with a diameter of 10 cm, with tumor thrombus in the main and first branch of the portal vein. Multiple complex anomalies in the abdomen were determined preoperatively. He had right-sided spleens-stomach-duodenum, liver at midline, inferior vena cava interruption with azygous continuation, and hepatic arterial anomaly. Extended left lobectomy of the liver with reconstruction of the portal vein was performed. Postoperatively, the patient recovered without major complications, and he was discharged on postoperative day 21. We report the first successful extended hepatectomy with portal vein reconstruction for HCC in a patient with rare situs anomalies.
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The reconstruction of male hair-bearing facial regions.
Ridgway, Emily B; Pribaz, Julian J
2011-01-01
Loss of hair-bearing regions of the face caused by trauma, tumor resection, or burn presents a difficult reconstructive task for plastic surgeons. The ideal tissue substitute should have the same characteristics as the facial area affected, consisting of thin, pliable tissue with a similar color match and hair-bearing quality. This is a retrospective study of 34 male patients who underwent reconstruction of hair-bearing facial regions performed by the senior author (J.J.P.). Local and pedicled flaps were used primarily to reconstruct defects after tumor extirpation, trauma, infections, and burns. Two patients had irradiation before reconstruction. Two patients had prior facial reconstruction with free flaps. The authors found that certain techniques of reconstructing defects in hair-bearing facial regions were more successful than others in particular facial regions and in different sizes of defects. The authors were able to develop a simple algorithm for management of facial defects involving the hair-bearing regions of the eyebrow, sideburn, beard, and mustache that may prospectively aid the planning of reconstructive strategy in these cases.
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Tensor-based dictionary learning for dynamic tomographic reconstruction
International Nuclear Information System (INIS)
Tan, Shengqi; Wu, Zhifang; Zhang, Yanbo; Mou, Xuanqin; Wang, Ge; Cao, Guohua; Yu, Hengyong
2015-01-01
In dynamic computed tomography (CT) reconstruction, the data acquisition speed limits the spatio-temporal resolution. Recently, compressed sensing theory has been instrumental in improving CT reconstruction from far few-view projections. In this paper, we present an adaptive method to train a tensor-based spatio-temporal dictionary for sparse representation of an image sequence during the reconstruction process. The correlations among atoms and across phases are considered to capture the characteristics of an object. The reconstruction problem is solved by the alternating direction method of multipliers. To recover fine or sharp structures such as edges, the nonlocal total variation is incorporated into the algorithmic framework. Preclinical examples including a sheep lung perfusion study and a dynamic mouse cardiac imaging demonstrate that the proposed approach outperforms the vectorized dictionary-based CT reconstruction in the case of few-view reconstruction. (paper)
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Tensor-based Dictionary Learning for Dynamic Tomographic Reconstruction
Tan, Shengqi; Zhang, Yanbo; Wang, Ge; Mou, Xuanqin; Cao, Guohua; Wu, Zhifang; Yu, Hengyong
2015-01-01
In dynamic computed tomography (CT) reconstruction, the data acquisition speed limits the spatio-temporal resolution. Recently, compressed sensing theory has been instrumental in improving CT reconstruction from far few-view projections. In this paper, we present an adaptive method to train a tensor-based spatio-temporal dictionary for sparse representation of an image sequence during the reconstruction process. The correlations among atoms and across phases are considered to capture the characteristics of an object. The reconstruction problem is solved by the alternating direction method of multipliers. To recover fine or sharp structures such as edges, the nonlocal total variation is incorporated into the algorithmic framework. Preclinical examples including a sheep lung perfusion study and a dynamic mouse cardiac imaging demonstrate that the proposed approach outperforms the vectorized dictionary-based CT reconstruction in the case of few-view reconstruction. PMID:25779991
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The Economics of Prepectoral Breast Reconstruction.
Glasberg, Scot Bradley
2017-12-01
The world of breast reconstruction over the last several years has seen a dramatic shift in focus to discussion and the application of placing tissue expanders and implants back into the prepectoral space. Although this technique failed during the early advent of breast reconstruction, newer technologies such as advances in fat grafting, improved acellular dermal matrices, better methods of assessing breast flap viability, and enhanced implants appear to have set the stage for the resurgence and positive early results seen with this technique. The main benefits of a switch to prepectoral breast reconstruction clinically appears to be less associated pain, lower incidence of animation deformities, and its associated symptoms as well as presumably better aesthetics. Early data suggest that the results are extremely promising and early adopters have attempted to define the ideal patients for prepectoral breast reconstruction. As with any new operative procedure, an assessment of finances and costs are crucial to its successful implementation. Although current data are minimal, this article attempts to build the fundamentals of an economic model that exhibits and displays potential savings through the use of prepectoral breast reconstruction.
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Baryon Acoustic Oscillations reconstruction with pixels
Energy Technology Data Exchange (ETDEWEB)
Obuljen, Andrej [SISSA—International School for Advanced Studies, Via Bonomea 265, 34136 Trieste (Italy); Villaescusa-Navarro, Francisco [Center for Computational Astrophysics, 160 5th Ave, New York, NY, 10010 (United States); Castorina, Emanuele [Berkeley Center for Cosmological Physics, University of California, Berkeley, CA 94720 (United States); Viel, Matteo, E-mail: aobuljen@sissa.it, E-mail: fvillaescusa@simonsfoundation.org, E-mail: ecastorina@berkeley.edu, E-mail: viel@oats.inaf.it [INAF, Osservatorio Astronomico di Trieste, via Tiepolo 11, I-34131 Trieste (Italy)
2017-09-01
Gravitational non-linear evolution induces a shift in the position of the baryon acoustic oscillations (BAO) peak together with a damping and broadening of its shape that bias and degrades the accuracy with which the position of the peak can be determined. BAO reconstruction is a technique developed to undo part of the effect of non-linearities. We present and analyse a reconstruction method that consists of displacing pixels instead of galaxies and whose implementation is easier than the standard reconstruction method. We show that this method is equivalent to the standard reconstruction technique in the limit where the number of pixels becomes very large. This method is particularly useful in surveys where individual galaxies are not resolved, as in 21cm intensity mapping observations. We validate this method by reconstructing mock pixelated maps, that we build from the distribution of matter and halos in real- and redshift-space, from a large set of numerical simulations. We find that this method is able to decrease the uncertainty in the BAO peak position by 30-50% over the typical angular resolution scales of 21 cm intensity mapping experiments.
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Cornelius, Carl-Peter; Smolka, Wenko; Giessler, Goetz A; Wilde, Frank; Probst, Florian A
2015-06-01
Preoperative planning of mandibular reconstruction has moved from mechanical simulation by dental model casts or stereolithographic models into an almost completely virtual environment. CAD/CAM applications allow a high level of accuracy by providing a custom template-assisted contouring approach for bone flaps. However, the clinical accuracy of CAD reconstruction is limited by the use of prebent reconstruction plates, an analogue step in an otherwise digital workstream. In this paper the integration of computerized, numerically-controlled (CNC) milled, patient-specific mandibular plates (PSMP) within the virtual workflow of computer-assisted mandibular free fibula flap reconstruction is illustrated in a clinical case. Intraoperatively, the bone segments as well as the plate arms showed a very good fit. Postoperative CT imaging demonstrated close approximation of the PSMP and fibular segments, and good alignment of native mandible and fibular segments and intersegmentally. Over a follow-up period of 12 months, there was an uneventful course of healing with good bony consolidation. The virtual design and automated fabrication of patient-specific mandibular reconstruction plates provide the missing link in the virtual workflow of computer-assisted mandibular free fibula flap reconstruction. Copyright © 2015 European Association for Cranio-Maxillo-Facial Surgery. Published by Elsevier Ltd. All rights reserved.
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Simulated annealing image reconstruction for positron emission tomography
International Nuclear Information System (INIS)
Sundermann, E.; Lemahieu, I.; Desmedt, P.
1994-01-01
In Positron Emission Tomography (PET) images have to be reconstructed from moisy projection data. The noise on the PET data can be modeled by a Poison distribution. In this paper, we present the results of using the simulated annealing technique to reconstruct PET images. Various parameter settings of the simulated annealing algorithm are discussed and optimized. The reconstructed images are of good quality and high contrast, in comparison to other reconstruction techniques. (authors)
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Mandibular reconstruction in adults: a review.
Goh, B.T.; Lee, S.; Tideman, H.; Stoelinga, P.J.W.
2008-01-01
Mandibular defects may result from trauma, inflammatory disease and benign or malignant tumours. Mastication, speech and facial aesthetics are often severely compromised without reconstruction. The goal of mandibular reconstruction is to restore facial form and function, implying repair of
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Innovations in diabetic foot reconstruction using supermicrosurgery.
Suh, Hyun Suk; Oh, Tae Suk; Hong, Joon Pio
2016-01-01
The treatment of diabetic foot ulceration is complex with multiple factors involved, and it may often lead to limb amputation. Hence, a multidisciplinary approach is warranted to cover the spectrum of treatment for diabetic foot, but in complex wounds, surgical treatment is inevitable. Surgery may involve the decision to preserve the limb by reconstruction or to amputate it. Reconstruction involves preserving the limb with secure coverage. Local flaps usually are able to provide sufficient coverage for small or moderate sized wound, but for larger wounds, soft tissue coverage involves flaps that are distantly located from the wound. Reconstruction of distant flap usually involves microsurgery, and now, further innovative methods such as supermicrosurgery have further given complex wounds a better chance to be reconstructed and limbs salvaged. This article reviews the microsurgery involved in reconstruction and introduces the new method of supermicrosurgery. Copyright © 2016 John Wiley & Sons, Ltd.
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Rhodes, Sara E.; Ziegler, Reinhard; Starkovich, Britt M.; Conard, Nicholas J.
2018-04-01
the proportion of cold tundra adapted species, suggesting that the tundra expanded leading up to the Neanderthal depopulation, but no period of drastic climatic change is recognizable. The Aurignacian was significantly colder and drier than the preceding period, with cold tundra expansion reaching its apex (for the time period studied). Based on these results the Swabian landscape first encountered by Aurignacian groups was significantly less hospitable than that known to the earlier Middle Paleolithic populations. These results correlate well with past paleoenvironmental reconstructions based on sedimentary, botanical, and faunal assemblages. There is no evidence in the small mammal record that climatic pressure drove Neanderthals from the Ach Valley, instead it seems likely they enjoyed a more temperate environment than later Aurignacian groups. Ongoing work focused on greater resolution of these climatic oscillations at similarly well-dated Swabian sites will shed further light on the timing and speed of this climatic shift and the response of the biological communities affected, including early human groups.
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International Nuclear Information System (INIS)
Niki, Noboru; Mizutani, Toshio; Takahashi, Yoshizo; Inouye, Tamon.
1983-01-01
The nescessity for developing real-time computerized tomography (CT) aiming at the dynamic observation of organs such as hearts has lately been advocated. It is necessary for its realization to reconstruct the images which are markedly faster than present CTs. Although various reconstructing methods have been proposed so far, the method practically employed at present is the filtered backprojection (FBP) method only, which can give high quality image reconstruction, but takes much computing time. In the past, the two-dimensional Fourier transform (TFT) method was regarded as unsuitable to practical use because the quality of images obtained was not good, in spite of the promising method for high speed reconstruction because of its less computing time. However, since it was revealed that the image quality by TFT method depended greatly on interpolation accuracy in two-dimensional Fourier space, the authors have developed a high-speed calculation algorithm that can obtain high quality images by pursuing the relationship between the image quality and the interpolation method. In this case, radial data sampling points in Fourier space are increased to β-th power of 2 times, and the linear or spline interpolation is used. Comparison of this method with the present FBP method resulted in the conclusion that the image quality is almost the same in practical image matrix, the computational time by TFT method becomes about 1/10 of FBP method, and the memory capacity also reduces by about 20 %. (Wakatsuki, Y.)
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Directory of Open Access Journals (Sweden)
Canon B. Shambare
2018-05-01
Full Text Available The church in Africa, like its counterparts elsewhere in the world, is called to fulfil the mission of God as expressed in the call ‘Missio Dei’ and influentially remains with the integrity of the mission of Christ (Missio Christos, which is liberative and practical. For Christ was not only concerned with the spiritual needs of the people, but also with their material well-being. The following question therefore arises: how can the church in Africa, in general, and in Zimbabwe, in particular, actively do God’s mission and remain with integrity in the midst of the reality of suffering. Furthermore, how can the church for mission and reconstruction be understood in a post-colonial Zimbabwe given the contextual realities of political crises, corruption, poverty, moral decadence, defined or censored truth, leadership crises and no freedom of expression? This article argues that, although the church is faced with these arduous realities, it remains called by God to do God’s mission. While in post-colonial Zimbabwe the socio-political, socio-economic and socio-religious situation might seem hopeless, the church has remained vibrant and alive for reconstruction theology. The transformation of society is possible given the authority and mission mandate of the church. This article argues that the church is a key player in reconstruction theology and in the transformation of society. For transformation to be possible, the church should witness to the gospel of Christ without fear of being labelled, castrated and persecuted. The article asserts that the spirit of the Bible should be revived in a time of reconstruction in Zimbabwe. The assumption in this article is that Zimbabwe is ready for reconstruction discourse. For this to happen, the researchers argue that the church as a critical relevant player in reconstruction needs to ‘be church’ in its missional mandates. Integrity is essential if a church wants to be relevantly missional and
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Rivals, Florent; Ziegler, Reinhard
2018-05-01
High-resolution paleoecological proxies, such as stable isotopes or tooth microwear in large mammals, are often used for their potential to deliver information about the paleodietary traits of individuals and populations at the time of death. Such proxies are of interest in high resolution sites because they provide accurate data regarding the diet of large herbivores as well as the habitats that were available at the time of formation of the site, and by inference can detect seasonality in the formation of the assemblages. The integration of two techniques, tooth mesowear and microwear, applied to Middle Pleistocene assemblages of large herbivores from Steinheim and Heppenloch did not indicate seasonality at any of the two sites, most likely due to low resolution and time averaging of the dietary signal. However, the combination of the two proxies was highly informative for reconstructing the paleodiets of the large herbivores. The two paleodietary proxies provided consistent results that permitted us to propose a reconstruction of the paleodiets and habitats available at each site.
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HEEL BONE RECONSTRUCTIVE OSTEOSYNTHESIS
Directory of Open Access Journals (Sweden)
A. N. Svetashov
2010-01-01
Full Text Available To detect the most appropriate to heel bone injury severity variants of reconstructive osteosynthesis it was analyzed treatment results of 56 patients. In 15 (26.8% patients classic methods of surgical service were applied, in 41 (73.2% cases to restore the defect porous implants were used. Osteosynthesis without heel bone plastic restoration accomplishment was ineffective in 60% patients from control group. Reconstructive osteosynthesis method ensures long-term good functional effect of rehabilitation in 96.4% patients from the basic group.
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International Nuclear Information System (INIS)
Chabanat, E.; D'Hondt, J.; Estre, N.; Fruehwirth, R.; Prokofiev, K.; Speer, T.; Vanlaer, P.; Waltenberger, W.
2005-01-01
Due to the high track multiplicity in the final states expected in proton collisions at the LHC experiments, novel vertex reconstruction algorithms are required. The vertex reconstruction problem can be decomposed into a pattern recognition problem ('vertex finding') and an estimation problem ('vertex fitting'). Starting from least-squares methods, robustifications of the classical algorithms are discussed and the statistical properties of the novel methods are shown. A whole set of different approaches for the vertex finding problem is presented and compared in relevant physics channels
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Simulated annealing image reconstruction for positron emission tomography
Energy Technology Data Exchange (ETDEWEB)
Sundermann, E; Lemahieu, I; Desmedt, P [Department of Electronics and Information Systems, University of Ghent, St. Pietersnieuwstraat 41, B-9000 Ghent, Belgium (Belgium)
1994-12-31
In Positron Emission Tomography (PET) images have to be reconstructed from moisy projection data. The noise on the PET data can be modeled by a Poison distribution. In this paper, we present the results of using the simulated annealing technique to reconstruct PET images. Various parameter settings of the simulated annealing algorithm are discussed and optimized. The reconstructed images are of good quality and high contrast, in comparison to other reconstruction techniques. (authors). 11 refs., 2 figs.
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DART: a practical reconstruction algorithm for discrete tomography.
Batenburg, Kees Joost; Sijbers, Jan
2011-09-01
In this paper, we present an iterative reconstruction algorithm for discrete tomography, called discrete algebraic reconstruction technique (DART). DART can be applied if the scanned object is known to consist of only a few different compositions, each corresponding to a constant gray value in the reconstruction. Prior knowledge of the gray values for each of the compositions is exploited to steer the current reconstruction towards a reconstruction that contains only these gray values. Based on experiments with both simulated CT data and experimental μCT data, it is shown that DART is capable of computing more accurate reconstructions from a small number of projection images, or from a small angular range, than alternative methods. It is also shown that DART can deal effectively with noisy projection data and that the algorithm is robust with respect to errors in the estimation of the gray values.
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Track Simulation and Reconstruction in the ATLAS experiment
Salzburger, Andreas; Elsing, Markus
The reconstruction and simulation of particle trajectories is an inevitable part of the analysis strate- gies for data taken with the ATLAS detector. Many aspects and necessary parts of a high-quality track reconstruction will be presented and discussed in this work. At first, the technical realisation of the data model and the reconstruction geometry will be given; the reconstruction geometry is charac- terised by a newly developed navigation model and an automated procedure for the synchronisation of the detailed simulation geometry description with the simplified reconstruction geometry model, which allows a precise description of the tracker material in track reconstruction. Both components help the coherent and fast integration of material effects in a newly established track extrapolation package, that is discussed in the following. The extrapolation engine enables a highly precise trans- port of the track parameterisation and the associated covariances through the complex magnetic field and the detec...
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DEFF Research Database (Denmark)
Hellebust, Taran Paulsen; Tanderup, Kari; Bergstrand, Eva Stabell
2007-01-01
in multiplanar reconstructed images (MPR) and (3) library plans, using pre-defined applicator geometry (LIB). The doses to the lead pellets were calculated. The relative standard deviation (SD) for all reconstruction methods was less than 3.7% in the dose points. The relative SD for the LIB method...
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SUBSTANTIATION OF SOLUTIONS PERTAINING TO COMPLEX PRODUCTION RECONSTRUCTION
Directory of Open Access Journals (Sweden)
V. Y. Gurinovich
2011-01-01
Full Text Available While taking an example of reconstruction and modernization of OJSC «Construction and Mounting Trust No.16, Novopolotsk» the paper substantiates solutions for complex production reconstruction. The production reconstruction is divided in three start-up facilities ensuring continuous finished-product output.
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Iterative concurrent reconstruction algorithms for emission computed tomography
International Nuclear Information System (INIS)
Brown, J.K.; Hasegawa, B.H.; Lang, T.F.
1994-01-01
Direct reconstruction techniques, such as those based on filtered backprojection, are typically used for emission computed tomography (ECT), even though it has been argued that iterative reconstruction methods may produce better clinical images. The major disadvantage of iterative reconstruction algorithms, and a significant reason for their lack of clinical acceptance, is their computational burden. We outline a new class of ''concurrent'' iterative reconstruction techniques for ECT in which the reconstruction process is reorganized such that a significant fraction of the computational processing occurs concurrently with the acquisition of ECT projection data. These new algorithms use the 10-30 min required for acquisition of a typical SPECT scan to iteratively process the available projection data, significantly reducing the requirements for post-acquisition processing. These algorithms are tested on SPECT projection data from a Hoffman brain phantom acquired with a 2 x 10 5 counts in 64 views each having 64 projections. The SPECT images are reconstructed as 64 x 64 tomograms, starting with six angular views. Other angular views are added to the reconstruction process sequentially, in a manner that reflects their availability for a typical acquisition protocol. The results suggest that if T s of concurrent processing are used, the reconstruction processing time required after completion of the data acquisition can be reduced by at least 1/3 T s. (Author)
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Hongbo Guo; Xiaowei He; Muhan Liu; Zeyu Zhang; Zhenhua Hu; Jie Tian
2017-06-01
Cerenkov luminescence tomography (CLT) provides a novel technique for 3-D noninvasive detection of radiopharmaceuticals in living subjects. However, because of the severe scattering of Cerenkov light, the reconstruction accuracy and stability of CLT is still unsatisfied. In this paper, a modified weight multispectral CLT (wmCLT) reconstruction strategy was developed which split the Cerenkov radiation spectrum into several sub-spectral bands and weighted the sub-spectral results to obtain the final result. To better evaluate the property of the wmCLT reconstruction strategy in terms of accuracy, stability and practicability, several numerical simulation experiments and in vivo experiments were conducted and the results obtained were compared with the traditional multispectral CLT (mCLT) and hybrid-spectral CLT (hCLT) reconstruction strategies. The numerical simulation results indicated that wmCLT strategy significantly improved the accuracy of Cerenkov source localization and intensity quantitation and exhibited good stability in suppressing noise in numerical simulation experiments. And the comparison of the results achieved from different in vivo experiments further indicated significant improvement of the wmCLT strategy in terms of the shape recovery of the bladder and the spatial resolution of imaging xenograft tumors. Overall the strategy reported here will facilitate the development of nuclear and optical molecular tomography in theoretical study.
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Energy Technology Data Exchange (ETDEWEB)
Fowble, Barbara, E-mail: BFowble@radonc.ucsf.edu [Department of Radiation Oncology, University of California San Francisco, San Francisco, California (United States); Park, Catherine [Department of Radiation Oncology, University of California San Francisco, San Francisco, California (United States); Wang, Frederick; Peled, Anne [Division of Plastic and Reconstructive Surgery, University of California San Francisco, San Francisco, California (United States); Alvarado, Michael; Ewing, Cheryl; Esserman, Laura [Carol Franc Buck Breast Care Center, Department of Surgery, University of California San Francisco, San Francisco, California (United States); Foster, Robert; Sbitany, Hani [Division of Plastic and Reconstructive Surgery, University of California San Francisco, San Francisco, California (United States); Hanlon, Alex [University of Pennsylvania School of Nursing, Philadelphia, Pennsylvania (United States)
2015-07-01
Objectives: Mastectomy rates for breast cancer have increased, with a parallel increase in immediate reconstruction. For some women, tissue expander and implant (TE/I) reconstruction is the preferred or sole option. This retrospective study examined the rate of TE/I reconstruction failure (ie, removal of the TE or I with the inability to replace it resulting in no final reconstruction or autologous tissue reconstruction) in patients receiving postmastectomy radiation therapy (PMRT). Methods and Materials: Between 2004 and 2012, 99 women had skin-sparing mastectomies (SSM) or total nipple/areolar skin-sparing mastectomies (TSSM) with immediate TE/I reconstruction and PMRT for pathologic stage II to III breast cancer. Ninety-seven percent had chemotherapy (doxorubicin and taxane-based), 22% underwent targeted therapies, and 78% had endocrine therapy. Radiation consisted of 5000 cGy given in 180 to 200 cGy to the reconstructed breast with or without treatment to the supraclavicular nodes. Median follow-up was 3.8 years. Results: Total TE/I failure was 18% (12% without final reconstruction, 6% converted to autologous reconstruction). In univariate analysis, the strongest predictor of reconstruction failure (RF) was absence of total TE/I coverage (acellular dermal matrix and/or serratus muscle) at the time of radiation. RF occurred in 32.5% of patients without total coverage compared to 9% with coverage (P=.0069). For women with total coverage, the location of the mastectomy scar in the inframammary fold region was associated with higher RF (19% vs 0%, P=.0189). In multivariate analysis, weight was a significant factor for RF, with lower weight associated with a higher RF. Weight appeared to be a surrogate for the interaction of total coverage, thin skin flaps, interval to exchange, and location of the mastectomy scar. Conclusions: RFs in patients receiving PMRT were lowered with total TE/I coverage at the time of radiation by avoiding inframammary fold incisions and
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Ding, Xiaodong; Li, Dawei; Zheng, Liwei; Bao, Hongyan; Chen, Huei-Fen; Kao, Shuh-Ji
2016-12-12
Lacustrine record of marine aerosol input has rarely been documented. Here, we present the sulfur geochemistry during the last deglaciation and early Holocene of a sediment core retrieved from the Dongyuan Lake in southern Taiwan. An unusually high sulfur peak accompanying pyrite presence is observed at 10.5 ka BP. Such high sulfur content in lacustrine record is unusual. The δ 34 S of sulfur varied from +9.5 to + 17.1‰ with two significant positive shifts at 10.5 and 9.4 ka BP. The sources of sulfur and potential processes involving the sulfur isotope variation including bacterial sulfate reduction, volcanic emissions, in-catchment sulfide oxidation and marine aerosol input are discussed. Enhanced marine aerosol input is the most likely explanation for such sulfur peaks and δ 34 S shifts. The positive δ 34 S shifts appeared concurrently with the maximum landslide events over Taiwan resulted from enhanced typhoon activities. The synchronicity among records suggests that increased typhoon activities promoted sea spray, and consequently enhanced the marine aerosol input with 34 S-enriched sulfate. Our sulfur geochemistry data revealed sea spray history and marine influence onto terrestrial environment at coastal regions. Wider coverage of spatial-temporal lacustrine sulfur geochemistry record is needed to validate the applicability of sulfur proxy in paleoenvironmental research.
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International Nuclear Information System (INIS)
Ferenc, M.
2001-01-01
The gradual reconstruction of the Bohunice V1 nuclear power plant (Slovakia) represents the most extensive reconstruction of a nuclear power plant in operation as implemented worldwide up to now. Extensive reconstruction works in both civil construction and process parts, in instrumentation and control part, and in electric part enhanced both nuclear safety and operational reliability of Bohunice V1 in a significant way.(author)
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Track reconstruction in CMS high luminosity environment
AUTHOR|(CDS)2067159
2016-01-01
The CMS tracker is the largest silicon detector ever built, covering 200 square meters and providing an average of 14 high-precision measurements per track. Tracking is essential for the reconstruction of objects like jets, muons, electrons and tau leptons starting from the raw data from the silicon pixel and strip detectors. Track reconstruction is widely used also at trigger level as it improves objects tagging and resolution.The CMS tracking code is organized in several levels, known as iterative steps, each optimized to reconstruct a class of particle trajectories, as the ones of particles originating from the primary vertex or displaced tracks from particles resulting from secondary vertices. Each iterative step consists of seeding, pattern recognition and fitting by a kalman filter, and a final filtering and cleaning. Each subsequent step works on hits not yet associated to a reconstructed particle trajectory.The CMS tracking code is continuously evolving to make the reconstruction computing load compat...
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Track reconstruction in CMS high luminosity environment
Goetzmann, Christophe
2014-01-01
The CMS tracker is the largest silicon detector ever built, covering 200 square meters and providing an average of 14 high-precision measurements per track. Tracking is essential for the reconstruction of objects like jets, muons, electrons and tau leptons starting from the raw data from the silicon pixel and strip detectors. Track reconstruction is widely used also at trigger level as it improves objects tagging and resolution.The CMS tracking code is organized in several levels, known as iterative steps, each optimized to reconstruct a class of particle trajectories, as the ones of particles originating from the primary vertex or displaced tracks from particles resulting from secondary vertices. Each iterative step consists of seeding, pattern recognition and fitting by a kalman filter, and a final filtering and cleaning. Each subsequent step works on hits not yet associated to a reconstructed particle trajectory.The CMS tracking code is continuously evolving to make the reconstruction computing load compat...
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Current Strategies in Reconstruction of Maxillectomy Defects
Andrades, Patricio; Militsakh, Oleg; Hanasono, Matthew M.; Rieger, Jana; Rosenthal, Eben L.
2014-01-01
Objective To outline a contemporary review of defect classification and reconstructive options. Design Review article. Setting Tertiary care referral centers. Results Although prosthetic rehabilitation remains the standard of care in many institutions, the discomfort of wearing, removing, and cleaning a prosthesis; the inability to retain a prosthesis in large defects; and the frequent need for readjustments often limit the value of this cost-effective and successful method of restoring speech and mastication. However, flap reconstruction offers an option for many, although there is no agreement as to which techniques should be used for optimal reconstruction. Flap reconstruction also involves a longer recovery time with increased risk of surgical complications, has higher costs associated with the procedure, and requires access to a highly experienced surgeon. Conclusion The surgeon and reconstructive team must make individualized decisions based on the extent of the maxillectomy defect (eg, the resection of the infraorbital rim, the extent of palate excision, skin compromise) and the need for radiation therapy. PMID:21844415
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Reconstructing baryon oscillations: A Lagrangian theory perspective
International Nuclear Information System (INIS)
Padmanabhan, Nikhil; White, Martin; Cohn, J. D.
2009-01-01
Recently Eisenstein and collaborators introduced a method to 'reconstruct' the linear power spectrum from a nonlinearly evolved galaxy distribution in order to improve precision in measurements of baryon acoustic oscillations. We reformulate this method within the Lagrangian picture of structure formation, to better understand what such a method does, and what the resulting power spectra are. We show that reconstruction does not reproduce the linear density field, at second order. We however show that it does reduce the damping of the oscillations due to nonlinear structure formation, explaining the improvements seen in simulations. Our results suggest that the reconstructed power spectrum is potentially better modeled as the sum of three different power spectra, each dominating over different wavelength ranges and with different nonlinear damping terms. Finally, we also show that reconstruction reduces the mode-coupling term in the power spectrum, explaining why miscalibrations of the acoustic scale are reduced when one considers the reconstructed power spectrum.
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Primary Vertex Reconstruction at the ATLAS Experiment
Grimm, Kathryn; The ATLAS collaboration
2016-01-01
Efficient and precise reconstruction of the primary vertex in an LHC collision is essential in both the reconstruction of the full kinematic properties of a hard-scatter event and of soft interactions as a measure of the amount of pile-up. The reconstruction of primary vertices in the busy, high pile-up environment of Run-2 of the LHC is a challenging task. New methods have been developed by the ATLAS experiment to reconstruct vertices in such environments. Advances in vertex seeding include methods taken from medical imaging, which allow for reconstruction of multiple vertices with small spatial separation. The adoption of this new seeding algorithm within the ATLAS adaptive vertex finding and fitting procedure will be discussed, and the first results of the new techniques from Run-2 data will be presented. Additionally, data-driven methods to evaluate vertex resolution will be presented with special focus on correct methods to evaluate the effect of the beam spot constraint; results from these methods in Ru...
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Model-Based Reconstructive Elasticity Imaging Using Ultrasound
Directory of Open Access Journals (Sweden)
Salavat R. Aglyamov
2007-01-01
Full Text Available Elasticity imaging is a reconstructive imaging technique where tissue motion in response to mechanical excitation is measured using modern imaging systems, and the estimated displacements are then used to reconstruct the spatial distribution of Young's modulus. Here we present an ultrasound elasticity imaging method that utilizes the model-based technique for Young's modulus reconstruction. Based on the geometry of the imaged object, only one axial component of the strain tensor is used. The numerical implementation of the method is highly efficient because the reconstruction is based on an analytic solution of the forward elastic problem. The model-based approach is illustrated using two potential clinical applications: differentiation of liver hemangioma and staging of deep venous thrombosis. Overall, these studies demonstrate that model-based reconstructive elasticity imaging can be used in applications where the geometry of the object and the surrounding tissue is somewhat known and certain assumptions about the pathology can be made.
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Reconstruction of long digital extensor tendon by cranial tibial muscle fascia graft in a dog.
Sabiza, Soroush; Khajeh, Ahmad; Naddaf, Hadi
2016-01-01
Tendon rupture in dogs is generally the result of a direct trauma. This report described the use of adjacent muscle autogenic fascial graft for reconstruction of distal rupture of long digital extensor tendon in a dog. A two-year-old male mix breed dog, was presented with a non-weight bearing lameness of the right hind limb and a deep rupture of lateral side of right tarsus. History taking revealed that this rupture appeared without any apparent cause, when walking around the farm, three days before. Radiography was done and no fracture was observed. Hyperextension of right tarsal joint compared to left limb was observed. Under general anesthesia, after dissections of the ruptured area, complete rupture of long digital extensor tendon was revealed. Then, we attempted to locate the edge of the tendon, however, the tendon length was shortened approximately 1 cm. Hence, a strip of 1 cm length from fascia of cranial tibial muscle was harvested to fill the defect. The graft was sutured to the two ends of tendon using locking loop pattern. Subcutaneous layers and the skin were sutured routinely. Ehmer sling bandage was applied to prevent weight bearing on the surgical region. Re-examination and phone contact with the owner eight weeks and six months postoperatively revealed a poor lameness and excellent function of the dog, respectively. It could be concluded that the fascia of adjacent muscles can be used as an autogenic graft for reconstruction of some tendon ruptures.
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Outcome of different facial nerve reconstruction techniques
Mohamed, Aboshanif; Omi, Eigo; Honda, Kohei; Suzuki, Shinsuke; Ishikawa, Kazuo
2016-01-01
Abstract Introduction: There is no technique of facial nerve reconstruction that guarantees facial function recovery up to grade III. Objective: To evaluate the efficacy and safety of different facial nerve reconstruction techniques. Methods: Facial nerve reconstruction was performed in 22 patients (facial nerve interpositional graft in 11 patients and hypoglossal-facial nerve transfer in another 11 patients). All patients had facial function House-Brackmann (HB) grade VI, either caused by...
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Sidibe, Moussa; Dieppois, Bastien; Mahé, Gil; Paturel, Jean-Emmanuel; Amoussou, Ernest; Anifowose, Babatunde; Lawler, Damian
2018-06-01
Over recent decades, regions of West and Central Africa have experienced different and significant changes in climatic patterns, which have significantly impacted hydrological regimes. Such impacts, however, are not fully understood at the regional scale, largely because of scarce hydroclimatic data. Therefore, the aim of this study is to (a) assemble a new, robust, reconstructed streamflow dataset of 152 gauging stations; (b) quantify changes in streamflow over 1950-2005 period, using these newly reconstructed datasets; (c) significantly reveal trends and variability in streamflow over West and Central Africa based on new reconstructions; and (d) assess the robustness of this dataset by comparing the results with those identified in key climatic drivers (e.g. precipitation and temperature) over the region. Gap filling methods applied to monthly time series (1950-2005) yielded robust results (median Kling-Gupta Efficiency >0.75). The study underlines a good agreement between precipitation and streamflow trends and reveals contrasts between western Africa (negative trends) and Central Africa (positive trends) in the 1950s and 1960s. Homogenous dry conditions of the 1970s and 1980s, characterized by reduced significant negative trends resulting from quasi-decadal modulations of the trend, are replaced by wetter conditions in the recent period (1993-2005). The effect of this rainfall recovery (which extends to West and Central Africa) on increased river flows are further amplified by land use change in some Sahelian basins. This is partially offset, however, by higher potential evapotranspiration rates over parts of Niger and Nigeria. Crucially, the new reconstructed streamflow datasets presented here will be available for both the scientific community and water resource managers.
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An Intelligent Actuator Fault Reconstruction Scheme for Robotic Manipulators.
Xiao, Bing; Yin, Shen
2018-02-01
This paper investigates a difficult problem of reconstructing actuator faults for robotic manipulators. An intelligent approach with fast reconstruction property is developed. This is achieved by using observer technique. This scheme is capable of precisely reconstructing the actual actuator fault. It is shown by Lyapunov stability analysis that the reconstruction error can converge to zero after finite time. A perfect reconstruction performance including precise and fast properties can be provided for actuator fault. The most important feature of the scheme is that, it does not depend on control law, dynamic model of actuator, faults' type, and also their time-profile. This super reconstruction performance and capability of the proposed approach are further validated by simulation and experimental results.
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Multicore Performance of Block Algebraic Iterative Reconstruction Methods
DEFF Research Database (Denmark)
Sørensen, Hans Henrik B.; Hansen, Per Christian
2014-01-01
Algebraic iterative methods are routinely used for solving the ill-posed sparse linear systems arising in tomographic image reconstruction. Here we consider the algebraic reconstruction technique (ART) and the simultaneous iterative reconstruction techniques (SIRT), both of which rely on semiconv......Algebraic iterative methods are routinely used for solving the ill-posed sparse linear systems arising in tomographic image reconstruction. Here we consider the algebraic reconstruction technique (ART) and the simultaneous iterative reconstruction techniques (SIRT), both of which rely...... on semiconvergence. Block versions of these methods, based on a partitioning of the linear system, are able to combine the fast semiconvergence of ART with the better multicore properties of SIRT. These block methods separate into two classes: those that, in each iteration, access the blocks in a sequential manner...... a fixed relaxation parameter in each method, namely, the one that leads to the fastest semiconvergence. Computational results show that for multicore computers, the sequential approach is preferable....
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Pediatric thermal injury: acute care and reconstruction update.
Armour, Alexis D; Billmire, David A
2009-07-01
The acute and reconstructive care of each pediatric burn patient presents unique challenges to the plastic surgeon and the burn care team. : The purpose of this review article is to highlight the interdependence between the acute and reconstructive needs of pediatric burn patients as it pertains to each anatomical site. Relevant principles of acute pediatric burn care and burn reconstruction are outlined, based on the authors' experience and review of the literature. The need for late reconstruction in pediatric burn survivors is significantly influenced by the acute surgical and rehabilitative treatments. With their vulnerability to airway swelling, hypothermia, pulmonary edema, and ischemia-reperfusion injury, pediatric patients with large burns require precise, life-saving treatment in the acute phase. Decision-making in pediatric burn reconstruction must take into account the patient's future growth, maturity, and often lack of suitable donor sites. Appropriately selected reconstructive techniques are essential to optimize function, appearance, and quality of life in pediatric burn survivors.
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Directory of Open Access Journals (Sweden)
C. Higutchi
Full Text Available Objective/background: This study is a case report that addresses the key aspects of vascular reconstruction, as well as the intraoperative complications, postoperative morbidity, and possibility of adjunctive therapy. Methods: This article reports the case of a 46 year old female patient with a leiomyosarcoma located in the middle segment of the inferior vena cava (between the renal and hepatic veins who underwent surgical resection with vena cava reconstruction and insertion of a tubular graft made of a synthetic material. Results: This case report reveals that surgical resection of the tumor with the insertion of a smaller-caliber tubular graft provide better patency of the vena cava reconstruction, which was maintained for a year after surgery. In addition, the patient was asymptomatic for lower limb edema, despite having a local recurrence after one year. Surgical resection is the treatment of choice for leiomyosarcoma of the inferior vena cava (LIVC and is the only therapy that offers a chance of cure. Several surgical techniques are used for this condition, especially, reconstruction with a vascular graft using natural or synthetic materials. Conclusion: Due to the aggressiveness of the disease, this study suggests that surgical intervention used may have no influence on a patient's survival outcome. However, vascular reconstruction with a smaller-caliber tubular graft may yield a better prognosis for patients in terms of postoperative symptoms, such as edema and thrombosis. Keywords: Inferior vena cava, Leiomyosarcoma, Synthetic vascular grafting
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International Nuclear Information System (INIS)
Hovden, Robert; Ercius, Peter; Jiang, Yi; Wang, Deli; Yu, Yingchao; Abruña, Héctor D.; Elser, Veit; Muller, David A.
2014-01-01
To date, high-resolution ( 6 nm) to appear blurred or missing. Here we demonstrate a three-dimensional imaging method that overcomes both these limits by combining through-focal depth sectioning and traditional tilt-series tomography to reconstruct extended objects, with high-resolution, in all three dimensions. The large convergence angle in aberration corrected instruments now becomes a benefit and not a hindrance to higher quality reconstructions. A through-focal reconstruction over a 390 nm 3D carbon support containing over 100 dealloyed and nanoporous PtCu catalyst particles revealed with sub-nanometer detail the extensive and connected interior pore structure that is created by the dealloying instability. - Highlights: • Develop tomography technique for high-resolution and large field of view. • We combine depth sectioning with traditional tilt tomography. • Through-focal tomography reduces tilts and improves resolution. • Through-focal tomography overcomes the fundamental Crowther limit. • Aberration-corrected becomes a benefit and not a hindrance for tomography
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Zhao, Yang; Shi, Yawei; Wang, Mian; Cui, Jin; Chen, Yitian; Zheng, Liang; Yin, Henghui; Chang, Guangqi
2017-08-01
The chimney graft (CG) technique has been proposed as a complete endovascular supra-aortic branch reconstruction for aortic pathologies. Due to the rapid growth of thoracic endovascular aortic repair (TEVAR) in China, we aimed to investigate the current data of the CG technique in this most populous country. Studies of supra-aortic branch reconstruction using the CG technique from Chinese centers were collected and analyzed. A total of 294 patients from Chinese centers who underwent TEVAR with CGs were included. There were 301 CGs performed, with a technical successful rate of 97.7%. The rate of early type I endoleaks was 7.1%, and the patency rate of the CGs was desirable. Balloon-expandable bare CGs were significantly associated with good early outcomes and a low rate of endoleaks. Current data from China revealed positive outcomes using CGs for supra-aortic branch reconstruction. Balloon-expandable bare CGs may be the first choice according to the data available but should be considered with caution.
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Advances in Bioprinting Technologies for Craniofacial Reconstruction.
Visscher, Dafydd O; Farré-Guasch, Elisabet; Helder, Marco N; Gibbs, Susan; Forouzanfar, Tymour; van Zuijlen, Paul P; Wolff, Jan
2016-09-01
Recent developments in craniofacial reconstruction have shown important advances in both the materials and methods used. While autogenous tissue is still considered to be the gold standard for these reconstructions, the harvesting procedure remains tedious and in many cases causes significant donor site morbidity. These limitations have subsequently led to the development of less invasive techniques such as 3D bioprinting that could offer possibilities to manufacture patient-tailored bioactive tissue constructs for craniofacial reconstruction. Here, we discuss the current technological and (pre)clinical advances of 3D bioprinting for use in craniofacial reconstruction and highlight the challenges that need to be addressed in the coming years. Copyright © 2016 Elsevier Ltd. All rights reserved.
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Chabanat, E; D'Hondt, J; Vanlaer, P; Prokofiev, K; Speer, T; Frühwirth, R; Waltenberger, W
2005-01-01
Because of the high track multiplicity in the final states expected in proton collisions at the LHC experiments, novel vertex reconstruction algorithms are required. The vertex reconstruction problem can be decomposed into a pattern recognition problem ("vertex finding") and an estimation problem ("vertex fitting"). Starting from least-square methods, ways to render the classical algorithms more robust are discussed and the statistical properties of the novel methods are shown. A whole set of different approaches for the vertex finding problem is presented and compared in relevant physics channels.
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Algorithms for Reconstruction of Undersampled Atomic Force Microscopy Images Supplementary Material
DEFF Research Database (Denmark)
2017-01-01
Two Jupyter Notebooks showcasing reconstructions of undersampled atomic force microscopy images. The reconstructions were obtained using a variety of interpolation and reconstruction methods.......Two Jupyter Notebooks showcasing reconstructions of undersampled atomic force microscopy images. The reconstructions were obtained using a variety of interpolation and reconstruction methods....
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RECONSTRUCTING WOMANHOOD IN TONY MORRISON'S BELOVED
Directory of Open Access Journals (Sweden)
Setefanus Suprajitno
2000-01-01
Full Text Available Tony Morrison's fifth novel, Beloved (1987, explores the degradation of slavery imposed upon slaves, even when they were owned by a "humane" slave master. The novel is set in the Reconstruction period, the period after the American civil war. The word reconstruction may be used for the Afro-Americans, especially for the Afro-American women who face double discrimination for being black and women. In dealing with women's oppression, Afro-American women have to reconstruct themselves as an act of survival, and to be aware of the horrors of the experiences which their ancestors had to go through.
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GEODESIC RECONSTRUCTION, SADDLE ZONES & HIERARCHICAL SEGMENTATION
Directory of Open Access Journals (Sweden)
Serge Beucher
2011-05-01
Full Text Available The morphological reconstruction based on geodesic operators, is a powerful tool in mathematical morphology. The general definition of this reconstruction supposes the use of a marker function f which is not necessarily related to the function g to be built. However, this paper deals with operations where the marker function is defined from given characteristic regions of the initial function f, as it is the case, for instance, for the extrema (maxima or minima but also for the saddle zones. Firstly, we show that the intuitive definition of a saddle zone is not easy to handle, especially when digitised images are involved. However, some of these saddle zones (regional ones also called overflow zones can be defined, this definition providing a simple algorithm to extract them. The second part of the paper is devoted to the use of these overflow zones as markers in image reconstruction. This reconstruction provides a new function which exhibits a new hierarchy of extrema. This hierarchy is equivalent to the hierarchy produced by the so-called waterfall algorithm. We explain why the waterfall algorithm can be achieved by performing a watershed transform of the function reconstructed by its initial watershed lines. Finally, some examples of use of this hierarchical segmentation are described.
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Craniofacial Reconstruction Evaluation by Geodesic Network
Directory of Open Access Journals (Sweden)
Junli Zhao
2014-01-01
Full Text Available Craniofacial reconstruction is to estimate an individual’s face model from its skull. It has a widespread application in forensic medicine, archeology, medical cosmetic surgery, and so forth. However, little attention is paid to the evaluation of craniofacial reconstruction. This paper proposes an objective method to evaluate globally and locally the reconstructed craniofacial faces based on the geodesic network. Firstly, the geodesic networks of the reconstructed craniofacial face and the original face are built, respectively, by geodesics and isogeodesics, whose intersections are network vertices. Then, the absolute value of the correlation coefficient of the features of all corresponding geodesic network vertices between two models is taken as the holistic similarity, where the weighted average of the shape index values in a neighborhood is defined as the feature of each network vertex. Moreover, the geodesic network vertices of each model are divided into six subareas, that is, forehead, eyes, nose, mouth, cheeks, and chin, and the local similarity is measured for each subarea. Experiments using 100 pairs of reconstructed craniofacial faces and their corresponding original faces show that the evaluation by our method is roughly consistent with the subjective evaluation derived from thirty-five persons in five groups.