WorldWideScience

Sample records for online database collection

  1. Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009.

    Science.gov (United States)

    Galperin, Michael Y; Cochrane, Guy R

    2009-01-01

    The current issue of Nucleic Acids Research includes descriptions of 179 databases, of which 95 are new. These databases (along with several molecular biology databases described in other journals) have been included in the Nucleic Acids Research online Molecular Biology Database Collection, bringing the total number of databases in the collection to 1170. In this introductory comment, we briefly describe some of these new databases and review the principles guiding the selection of databases for inclusion in the Nucleic Acids Research annual Database Issue and the Nucleic Acids Research online Molecular Biology Database Collection. The complete database list and summaries are available online at the Nucleic Acids Research web site (http://nar.oxfordjournals.org/).

  2. The 2013 Nucleic Acids Research Database Issue and the online molecular biology database collection.

    Science.gov (United States)

    Fernández-Suárez, Xosé M; Galperin, Michael Y

    2013-01-01

    The 20th annual Database Issue of Nucleic Acids Research includes 176 articles, half of which describe new online molecular biology databases and the other half provide updates on the databases previously featured in NAR and other journals. This year's highlights include two databases of DNA repeat elements; several databases of transcriptional factors and transcriptional factor-binding sites; databases on various aspects of protein structure and protein-protein interactions; databases for metagenomic and rRNA sequence analysis; and four databases specifically dedicated to Escherichia coli. The increased emphasis on using the genome data to improve human health is reflected in the development of the databases of genomic structural variation (NCBI's dbVar and EBI's DGVa), the NIH Genetic Testing Registry and several other databases centered on the genetic basis of human disease, potential drugs, their targets and the mechanisms of protein-ligand binding. Two new databases present genomic and RNAseq data for monkeys, providing wealth of data on our closest relatives for comparative genomics purposes. The NAR online Molecular Biology Database Collection, available at http://www.oxfordjournals.org/nar/database/a/, has been updated and currently lists 1512 online databases. The full content of the Database Issue is freely available online on the Nucleic Acids Research website (http://nar.oxfordjournals.org/).

  3. The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources.

    Science.gov (United States)

    Cochrane, Guy R; Galperin, Michael Y

    2010-01-01

    The current issue of Nucleic Acids Research includes descriptions of 58 new and 73 updated data resources. The accompanying online Database Collection, available at http://www.oxfordjournals.org/nar/database/a/, now lists 1230 carefully selected databases covering various aspects of molecular and cell biology. While most data resource descriptions remain very brief, the issue includes several longer papers that highlight recent significant developments in such databases as Pfam, MetaCyc, UniProt, ELM and PDBe. The databases described in the Database Issue and Database Collection, however, are far more than a distinct set of resources; they form a network of connected data, concepts and shared technology. The full content of the Database Issue is available online at the Nucleic Acids Research web site (http://nar.oxfordjournals.org/).

  4. The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection.

    Science.gov (United States)

    Galperin, Michael Y; Fernández-Suárez, Xosé M

    2012-01-01

    The 19th annual Database Issue of Nucleic Acids Research features descriptions of 92 new online databases covering various areas of molecular biology and 100 papers describing recent updates to the databases previously described in NAR and other journals. The highlights of this issue include, among others, a description of neXtProt, a knowledgebase on human proteins; a detailed explanation of the principles behind the NCBI Taxonomy Database; NCBI and EBI papers on the recently launched BioSample databases that store sample information for a variety of database resources; descriptions of the recent developments in the Gene Ontology and UniProt Gene Ontology Annotation projects; updates on Pfam, SMART and InterPro domain databases; update papers on KEGG and TAIR, two universally acclaimed databases that face an uncertain future; and a separate section with 10 wiki-based databases, introduced in an accompanying editorial. The NAR online Molecular Biology Database Collection, available at http://www.oxfordjournals.org/nar/database/a/, has been updated and now lists 1380 databases. Brief machine-readable descriptions of the databases featured in this issue, according to the BioDBcore standards, will be provided at the http://biosharing.org/biodbcore web site. The full content of the Database Issue is freely available online on the Nucleic Acids Research web site (http://nar.oxfordjournals.org/).

  5. The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection.

    Science.gov (United States)

    Galperin, Michael Y; Cochrane, Guy R

    2011-01-01

    The current 18th Database Issue of Nucleic Acids Research features descriptions of 96 new and 83 updated online databases covering various areas of molecular biology. It includes two editorials, one that discusses COMBREX, a new exciting project aimed at figuring out the functions of the 'conserved hypothetical' proteins, and one concerning BioDBcore, a proposed description of the 'minimal information about a biological database'. Papers from the members of the International Nucleotide Sequence Database collaboration (INSDC) describe each of the participating databases, DDBJ, ENA and GenBank, principles of data exchange within the collaboration, and the recently established Sequence Read Archive. A testament to the longevity of databases, this issue includes updates on the RNA modification database, Definition of Secondary Structure of Proteins (DSSP) and Homology-derived Secondary Structure of Proteins (HSSP) databases, which have not been featured here in >12 years. There is also a block of papers describing recent progress in protein structure databases, such as Protein DataBank (PDB), PDB in Europe (PDBe), CATH, SUPERFAMILY and others, as well as databases on protein structure modeling, protein-protein interactions and the organization of inter-protein contact sites. Other highlights include updates of the popular gene expression databases, GEO and ArrayExpress, several cancer gene databases and a detailed description of the UK PubMed Central project. The Nucleic Acids Research online Database Collection, available at: http://www.oxfordjournals.org/nar/database/a/, now lists 1330 carefully selected molecular biology databases. The full content of the Database Issue is freely available online at the Nucleic Acids Research web site (http://nar.oxfordjournals.org/).

  6. The 2014 Nucleic Acids Research Database Issue and an updated NAR online Molecular Biology Database Collection.

    Science.gov (United States)

    Fernández-Suárez, Xosé M; Rigden, Daniel J; Galperin, Michael Y

    2014-01-01

    The 2014 Nucleic Acids Research Database Issue includes descriptions of 58 new molecular biology databases and recent updates to 123 databases previously featured in NAR or other journals. For convenience, the issue is now divided into eight sections that reflect major subject categories. Among the highlights of this issue are six databases of the transcription factor binding sites in various organisms and updates on such popular databases as CAZy, Database of Genomic Variants (DGV), dbGaP, DrugBank, KEGG, miRBase, Pfam, Reactome, SEED, TCDB and UniProt. There is a strong block of structural databases, which includes, among others, the new RNA Bricks database, updates on PDBe, PDBsum, ArchDB, Gene3D, ModBase, Nucleic Acid Database and the recently revived iPfam database. An update on the NCBI's MMDB describes VAST+, an improved tool for protein structure comparison. Two articles highlight the development of the Structural Classification of Proteins (SCOP) database: one describes SCOPe, which automates assignment of new structures to the existing SCOP hierarchy; the other one describes the first version of SCOP2, with its more flexible approach to classifying protein structures. This issue also includes a collection of articles on bacterial taxonomy and metagenomics, which includes updates on the List of Prokaryotic Names with Standing in Nomenclature (LPSN), Ribosomal Database Project (RDP), the Silva/LTP project and several new metagenomics resources. The NAR online Molecular Biology Database Collection, http://www.oxfordjournals.org/nar/database/c/, has been expanded to 1552 databases. The entire Database Issue is freely available online on the Nucleic Acids Research website (http://nar.oxfordjournals.org/).

  7. The Relationship between Searches Performed in Online Databases and the Number of Full-Text Articles Accessed: Measuring the Interaction between Database and E-Journal Collections

    Science.gov (United States)

    Lamothe, Alain R.

    2011-01-01

    The purpose of this paper is to report the results of a quantitative analysis exploring the interaction and relationship between the online database and electronic journal collections at the J. N. Desmarais Library of Laurentian University. A very strong relationship exists between the number of searches and the size of the online database…

  8. The Relationship between Searches Performed in Online Databases and the Number of Full-Text Articles Accessed: Measuring the Interaction between Database and E-Journal Collections

    Science.gov (United States)

    Lamothe, Alain R.

    2011-01-01

    The purpose of this paper is to report the results of a quantitative analysis exploring the interaction and relationship between the online database and electronic journal collections at the J. N. Desmarais Library of Laurentian University. A very strong relationship exists between the number of searches and the size of the online database…

  9. Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design.

    Science.gov (United States)

    Clarkson, Melissa D

    2016-05-21

    A large number of online atlases and databases have been developed to mange the rapidly growing amount of data describing embryogenesis. As these community resources continue to evolve, it is important to understand how representations of anatomy can facilitate the sharing and integration of data. In addition, attention to the design of the interfaces is critical to make online resources useful and usable. I first present a survey of online atlases and gene expression resources for model organisms, with a focus on methods of semantic and spatial representation of anatomy. A total of 14 anatomical atlases and 21 gene expression resources are included. This survey demonstrates how choices in semantic representation, in the form of ontologies, can enhance interface search functions and provide links between relevant information. This survey also reviews methods for spatially representing anatomy in online resources. I then provide a collection of patterns for interface design based on the atlases and databases surveyed. These patterns include methods for displaying graphics, integrating semantic and spatial representations, organizing information, and querying databases to find genes expressed in anatomical structures. This collection of patterns for interface design will assist biologists and software developers in planning the interfaces of new atlases and databases or enhancing existing ones. They also show the benefits of standardizing semantic and spatial representations of anatomy by demonstrating how interfaces can use standardization to provide enhanced functionality.

  10. Collecting Taxes Database

    Data.gov (United States)

    US Agency for International Development — The Collecting Taxes Database contains performance and structural indicators about national tax systems. The database contains quantitative revenue performance...

  11. The Molecular Biology Database Collection: 2008 update.

    Science.gov (United States)

    Galperin, Michael Y

    2008-01-01

    The Nucleic Acids Research online Molecular Biology Database Collection is a public repository that lists more than 1000 databases described in this and previous Nucleic Acids Research annual database issues, as well as a selection of molecular biology databases described in other journals. All databases included in this Collection are freely available to the public. The 2008 update includes 1078 databases, 110 more than the previous one. The links to more than 80 databases have been updated and 25 obsolete databases have been removed from the list. The complete database list and summaries are available online at the Nucleic Acids Research web site, http://nar.oxfordjournals.org/.

  12. Begin: Online Database Searching Now!

    Science.gov (United States)

    Lodish, Erica K.

    1986-01-01

    Because of the increasing importance of online databases, school library media specialists are encouraged to introduce students to online searching. Four books that would help media specialists gain a basic background are reviewed and it is noted that although they are very technical, they can be adapted to individual needs. (EM)

  13. Visualizing Data and the Online FRED Database

    Science.gov (United States)

    Méndez-Carbajo, Diego

    2015-01-01

    The author discusses a pedagogical strategy based on data visualization and analysis in the teaching of intermediate macroeconomics and financial economics. In these short projects, students collect and manipulate economic data from the online Federal Reserve Economic Database (FRED) in order to illustrate theoretical relationships discussed in…

  14. Visualizing Data and the Online FRED Database

    Science.gov (United States)

    Méndez-Carbajo, Diego

    2015-01-01

    The author discusses a pedagogical strategy based on data visualization and analysis in the teaching of intermediate macroeconomics and financial economics. In these short projects, students collect and manipulate economic data from the online Federal Reserve Economic Database (FRED) in order to illustrate theoretical relationships discussed in…

  15. The JWS online simulation database.

    Science.gov (United States)

    Peters, Martin; Eicher, Johann J; van Niekerk, David D; Waltemath, Dagmar; Snoep, Jacky L

    2017-05-15

    JWS Online is a web-based platform for construction, simulation and exchange of models in standard formats. We have extended the platform with a database for curated simulation experiments that can be accessed directly via a URL, allowing one-click reproduction of published results. Users can modify the simulation experiments and export them in standard formats. The Simulation database thus lowers the bar on exploring computational models, helps users create valid simulation descriptions and improves the reproducibility of published simulation experiments. The Simulation Database is available on line at https://jjj.bio.vu.nl/models/experiments/ . jls@sun.ac.za .

  16. How to Collect the Documents on Online Database by Using Endnote%如何利用Endnote搜集网上数据库的文献

    Institute of Scientific and Technical Information of China (English)

    史小飞

    2015-01-01

    Scientific researchers often use the Internet to retrieve and collect documents. And nowadays, a lot of literature database on the Internet support Endnote to download document information. This paper introduces in detail the methods and paths for downloading the reference document information of online databases by using Endnote.%科研工作者经常利用网络检索并搜集文献,目前互联网上很多文献数据库支持Endnote下载文献信息. 详细介绍了利用Endnote下载网上文献数据库参考文献信息的方法和途径.

  17. Online Petroleum Industry Bibliographic Databases: A Review.

    Science.gov (United States)

    Anderson, Margaret B.

    This paper discusses the present status of the bibliographic database industry, reviews the development of online databases of interest to the petroleum industry, and considers future developments in online searching and their effect on libraries and information centers. Three groups of databases are described: (1) databases developed by the…

  18. 77 FR 20010 - Proposed Information Collection; Comment Request; Online Customer Relationship Management (CRM...

    Science.gov (United States)

    2012-04-03

    ... Year 2011 MBDA developed and implemented a new Customer Relationship Management/Performance Database to... Minority Business Development Agency Proposed Information Collection; Comment Request; Online Customer Relationship Management (CRM)/Performance Databases, the Online Phoenix Database, and the Online...

  19. Online database of archaeomagnetism in Japan

    Science.gov (United States)

    Hatakeyama, T.

    2013-12-01

    We are now reconstructing the archaeomagnetic database and the geomagnetic secular variation model for the past 2000 years in Japan. Here we introduce a new online database of archaeomagnetism. There are several thousands of archaeomagnetic data mainly obtained from buried kilns and baked earths. Our goal is collecting and compiling these data and publishing to the geoscientists, the archaeologist, the people involved in education, students and citizens interested in geomagnetism and archaeology. Now we support a search engine of the archaeomagnetic data of direction and intensity, links to the references and sites outside, the site locations on a map and the educational documents (only in Japanese). We have a future plan to provide database improved and secular variation model reduced to given location in the Far East region.

  20. An online database for brain disease research

    Directory of Open Access Journals (Sweden)

    Richman Sam

    2006-04-01

    Full Text Available Abstract Background The Stanley Medical Research Institute online genomics database (SMRIDB is a comprehensive web-based system for understanding the genetic effects of human brain disease (i.e. bipolar, schizophrenia, and depression. This database contains fully annotated clinical metadata and gene expression patterns generated within 12 controlled studies across 6 different microarray platforms. Description A thorough collection of gene expression summaries are provided, inclusive of patient demographics, disease subclasses, regulated biological pathways, and functional classifications. Conclusion The combination of database content, structure, and query speed offers researchers an efficient tool for data mining of brain disease complete with information such as: cross-platform comparisons, biomarkers elucidation for target discovery, and lifestyle/demographic associations to brain diseases.

  1. Brede Tools and Federating Online Neuroinformatics Databases

    DEFF Research Database (Denmark)

    Nielsen, Finn Årup

    2014-01-01

    As open science neuroinformatics databases the Brede Database and Brede Wiki seek to make distribution and federation of their content as easy and transparent as possible. The databases rely on simple formats and allow other online tools to reuse their content. This paper describes the possible...... interconnections on different levels between the Brede tools and other databases....

  2. Library Instruction and Online Database Searching.

    Science.gov (United States)

    Mercado, Heidi

    1999-01-01

    Reviews changes in online database searching in academic libraries. Topics include librarians conducting all searches; the advent of end-user searching and the need for user instruction; compact disk technology; online public catalogs; the Internet; full text databases; electronic information literacy; user education and the remote library user;…

  3. Acquisition of Language Information from Online Databases

    Science.gov (United States)

    Sano, Hikomaro

    This report describes the methods to acquire language information from online databases, which are usually employed to retrieve technical information. Typical uses are shown to obtain equivalent foreign words, language usages, illustrative sentences and statistical linguistic data, by use of JOIS, DIALOG, SDC and BRS online information systems. In comparison with dictionaries and usage books, the online databases provide a vast file of language information, which is unabridged, continually updated and accessible through any words or their combinations. In addition, they give quantitative data such as frequencies in use of words and expressions.

  4. [Construction of a online database for functional dyspepsia].

    Science.gov (United States)

    Huang, Zaiwei; Chen, Liping; Xiao, Bing

    2015-06-01

    To establish a clinical database of functional dyspepsia for epidemiological researches and standardizing clinical diagnosis and treatment. The functional dyspepsia database was designed to incorporate the data from in-patients and out-patients with functional dyspepsia treated since July, 2013 and was constructed using Visual Studio. The patient data were collected using a customized case report form designed according to the Roman criteria III and the etiology, symptoms, and treatments of the patients. All the cases deemed ineligible were excluded. The database was displayed on a website and allowed online data entry, case searches and statistical analysis of the clinical parameters. The established online database for functional dyspepsia contained data of the general information, clinical symptoms, psychological status, living habits, dietary habits, medical history, examination results, clinical diagnosis, treatment methods and courses, outcomes and data statistics. The database was fully functional and provided complete and standardized data of functional dyspepsia for clinical studies.

  5. Online Polar Oceans Geophysical Databases

    Science.gov (United States)

    Goodwillie, A. M.; O'Hara, S.; Arko, R. A.; Carbotte, S. M.

    2006-12-01

    With funding from the Office of Polar Programs of the U.S. National Science Foundation, the Antarctic Multibeam Bathymetry Synthesis (AMBS, http://www.marine-geo.org/antarctic/) is an integrated web-accessible bathymetry and geophysical database for the Southern Ocean and Antarctica, serving data from the US research vessels Nathaniel B. Palmer and Laurence M. Gould, amongst others. Interdisciplinary polar data can be downloaded for free through Data Link (http://www.marine-geo.org/link/index.php) which enables keyword searches by data and instrument type, geographical bounds, scientist, expedition name and dates. The data visualisation tool GeoMapApp (http://www.marine-geo.org/geomapapp/) supports dynamic exploration of a multi-resolutional digital elevation model (DEM) of the global oceans, including the polar regions, allowing users to generate custom grids and maps and import their own data sets and grids. A specialised polar stereographic map projection incorporating multibeam swath bathymetry and the BEDMAP under-ice seaflooor topography is available for the Southern Ocean. To promote inter-operability, we are working with research partners including the Marine Metadata Interoperability (MMI) project and the National Geophysical Data Center to develop standardised metadata and best practices that comply with existing FGDC and ISO standards. For example, the global DEM is served freely as an OGC-compliant Web Map Service map layer and is available for viewing with Google Earth. We are working towards full indexing of the AMBS database holdings at the Antarctic Master Directory. geo.org/antarctic/

  6. On-Line Databases in Mexico.

    Science.gov (United States)

    Molina, Enzo

    1986-01-01

    Use of online bibliographic databases in Mexico is provided through Servicio de Consulta a Bancos de Informacion, a public service that provides information retrieval, document delivery, translation, technical support, and training services. Technical infrastructure is based on a public packet-switching network and institutional users may receive…

  7. An online database of nuclear electromagnetic moments

    Science.gov (United States)

    Mertzimekis, T. J.; Stamou, K.; Psaltis, A.

    2016-01-01

    Measurements of nuclear magnetic dipole and electric quadrupole moments are considered quite important for the understanding of nuclear structure both near and far from the valley of stability. The recent advent of radioactive beams has resulted in a plethora of new, continuously flowing, experimental data on nuclear structure - including nuclear moments - which hinders the information management. A new, dedicated, public and user friendly online database

  8. Configuration Database for BaBar On-line

    Energy Technology Data Exchange (ETDEWEB)

    Salnikov, Andrei

    2003-05-27

    The configuration database is one of the vital systems in the BaBar on-line system. It provides services for the different parts of the data acquisition system and control system, which require run-time parameters. The original design and implementation of the configuration database played a significant role in the successful BaBar operations since the beginning of experiment. Recent additions to the design of the configuration database provide better means for the management of data and add new tools to simplify main configuration tasks. We describe the design of the configuration database, its implementation with the Objectivity/DB object-oriented database, and our experience collected during the years of operation.

  9. The 2015 Nucleic Acids Research Database Issue and molecular biology database collection.

    Science.gov (United States)

    Galperin, Michael Y; Rigden, Daniel J; Fernández-Suárez, Xosé M

    2015-01-01

    The 2015 Nucleic Acids Research Database Issue contains 172 papers that include descriptions of 56 new molecular biology databases, and updates on 115 databases whose descriptions have been previously published in NAR or other journals. Following the classification that has been introduced last year in order to simplify navigation of the entire issue, these articles are divided into eight subject categories. This year's highlights include RNAcentral, an international community portal to various databases on noncoding RNA; ValidatorDB, a validation database for protein structures and their ligands; SASBDB, a primary repository for small-angle scattering data of various macromolecular complexes; MoonProt, a database of 'moonlighting' proteins, and two new databases of protein-protein and other macromolecular complexes, ComPPI and the Complex Portal. This issue also includes an unusually high number of cancer-related databases and other databases dedicated to genomic basics of disease and potential drugs and drug targets. The size of NAR online Molecular Biology Database Collection, http://www.oxfordjournals.org/nar/database/a/, remained approximately the same, following the addition of 74 new resources and removal of 77 obsolete web sites. The entire Database Issue is freely available online on the Nucleic Acids Research web site (http://nar.oxfordjournals.org/).

  10. Online genetic databases informing human genome epidemiology

    Directory of Open Access Journals (Sweden)

    Higgins Julian PT

    2007-07-01

    Full Text Available Abstract Background With the advent of high throughput genotyping technology and the information available via projects such as the human genome sequencing and the HapMap project, more and more data relevant to the study of genetics and disease risk will be produced. Systematic reviews and meta-analyses of human genome epidemiology studies rely on the ability to identify relevant studies and to obtain suitable data from these studies. A first port of call for most such reviews is a search of MEDLINE. We examined whether this could be usefully supplemented by identifying databases on the World Wide Web that contain genetic epidemiological information. Methods We conducted a systematic search for online databases containing genetic epidemiological information on gene prevalence or gene-disease association. In those containing information on genetic association studies, we examined what additional information could be obtained to supplement a MEDLINE literature search. Results We identified 111 databases containing prevalence data, 67 databases specific to a single gene and only 13 that contained information on gene-disease associations. Most of the latter 13 databases were linked to MEDLINE, although five contained information that may not be available from other sources. Conclusion There is no single resource of structured data from genetic association studies covering multiple diseases, and in relation to the number of studies being conducted there is very little information specific to gene-disease association studies currently available on the World Wide Web. Until comprehensive data repositories are created and utilized regularly, new data will remain largely inaccessible to many systematic review authors and meta-analysts.

  11. First experiments on a new online handwritten flowchart database

    Science.gov (United States)

    Awal, Ahmad-Montaser; Feng, Guihuan; Mouchère, Harold; Viard-Gaudin, Christian

    2011-01-01

    We propose in this paper a new online handwritten flowchart database and perform some first experiments to have a baseline benchmark on this dataset. The collected database consists of 419 flowcharts labeled at the stroke and symbol levels. In addition, an isolated database of graphical and text symbols was extracted from these collected flowcharts. Then, we tackle the problem of online handwritten flowchart recognition from two different points of view. Firstly, we consider that flowcharts are correctly segmented, and we propose different classifiers to perform two tasks, text/non-text separation and graphical symbol recognition. Tested with the extracted isolated test database, we achieve up to 90% and 98% in text/non-text separation and up to 93.5% in graphical symbols recognition. Secondly, we propose a global approach to perform flowchart segmentation and recognition. For this latter, we adopt a global learning schema and a recognition architecture that considers a simultaneous segmentation and recognition. Global architecture is trained and tested directly with flowcharts. Results show the interest of such global approach, but regarding the complexity of flowchart segmentation problem, there is still lot of space to improve the global learning and recognition methods.

  12. The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection.

    Science.gov (United States)

    Rigden, Daniel J; Fernández-Suárez, Xosé M; Galperin, Michael Y

    2016-01-04

    The 2016 Database Issue of Nucleic Acids Research starts with overviews of the resources provided by three major bioinformatics centers, the U.S. National Center for Biotechnology Information (NCBI), the European Bioinformatics Institute (EMBL-EBI) and Swiss Institute for Bioinformatics (SIB). Also included are descriptions of 62 new databases and updates on 95 databases that have been previously featured in NAR plus 17 previously described elsewhere. A number of papers in this issue deal with resources on nucleic acids, including various kinds of non-coding RNAs and their interactions, molecular dynamics simulations of nucleic acid structure, and two databases of super-enhancers. The protein database section features important updates on the EBI's Pfam, PDBe and PRIDE databases, as well as a variety of resources on pathways, metabolomics and metabolic modeling. This issue also includes updates on popular metagenomics resources, such as MG-RAST, EBI Metagenomics, and probeBASE, as well as a newly compiled Human Pan-Microbe Communities database. A significant fraction of the new and updated databases are dedicated to the genetic basis of disease, primarily cancer, and various aspects of drug research, including resources for patented drugs, their side effects, withdrawn drugs, and potential drug targets. A further six papers present updated databases of various antimicrobial and anticancer peptides. The entire Database Issue is freely available online on the Nucleic Acids Research website (http://nar.oxfordjournals.org/). The NAR online Molecular Biology Database Collection, http://www.oxfordjournals.org/nar/database/c/, has been updated with the addition of 88 new resources and removal of 23 obsolete websites, which brought the current listing to 1685 databases.

  13. DSSTOX NATIONAL TOXICOLOGY PROGRAM BIOASSAY ON-LINE DATABASE STRUCTURE-INDEX LOCATOR FILE: SDF FILE AND DOCUMENTATION

    Science.gov (United States)

    NTPBSI: National Toxicology Program Bioassay On-line Database Structure-Index Locator File. Database contains the results collected on approxiately 300 toxicity studies from shorter duration test and from genetic toxicity studies, both in vitro and in vivo tests.

  14. Online Information. Selected Databases at the New York State Library.

    Science.gov (United States)

    New York State Library, Albany. Database Services.

    This brochure describes the online information services at the New York State Library, which has online access to over 250 databases covering a broad range of subject areas, including current events, law, science, medicine, public affairs, grants, business, computer technology, education, social welfare, and humanities. Many of these databases are…

  15. GOVERNING GENETIC DATABASES: COLLECTION, STORAGE AND USE

    Science.gov (United States)

    Gibbons, Susan M.C.; Kaye, Jane

    2008-01-01

    This paper provides an introduction to a collection of five papers, published as a special symposium journal issue, under the title: “Governing Genetic Databases: Collection, Storage and Use”. It begins by setting the scene, to provide a backdrop and context for the papers. It describes the evolving scientific landscape around genetic databases and genomic research, particularly within the biomedical and criminal forensic investigation fields. It notes the lack of any clear, coherent or coordinated legal governance regime, either at the national or international level. It then identifies and reflects on key cross-cutting issues and themes that emerge from the five papers, in particular: terminology and definitions; consent; special concerns around population genetic databases (biobanks) and forensic databases; international harmonisation; data protection; data access; boundary-setting; governance; and issues around balancing individual interests against public good values. PMID:18841252

  16. Clinical decision support tools: analysis of online drug information databases

    OpenAIRE

    Seamon Matthew J; Polen Hyla H; Marsh Wallace A; Clauson Kevin A; Ortiz Blanca I

    2007-01-01

    Abstract Background Online drug information databases are used to assist in enhancing clinical decision support. However, the choice of which online database to consult, purchase or subscribe to is likely made based on subjective elements such as history of use, familiarity, or availability during professional training. The purpose of this study was to evaluate clinical decision support tools for drug information by systematically comparing the most commonly used online drug information datab...

  17. Tripal: a construction toolkit for online genome databases.

    Science.gov (United States)

    Ficklin, Stephen P; Sanderson, Lacey-Anne; Cheng, Chun-Huai; Staton, Margaret E; Lee, Taein; Cho, Il-Hyung; Jung, Sook; Bett, Kirstin E; Main, Doreen

    2011-01-01

    As the availability, affordability and magnitude of genomics and genetics research increases so does the need to provide online access to resulting data and analyses. Availability of a tailored online database is the desire for many investigators or research communities; however, managing the Information Technology infrastructure needed to create such a database can be an undesired distraction from primary research or potentially cost prohibitive. Tripal provides simplified site development by merging the power of Drupal, a popular web Content Management System with that of Chado, a community-derived database schema for storage of genomic, genetic and other related biological data. Tripal provides an interface that extends the content management features of Drupal to the data housed in Chado. Furthermore, Tripal provides a web-based Chado installer, genomic data loaders, web-based editing of data for organisms, genomic features, biological libraries, controlled vocabularies and stock collections. Also available are Tripal extensions that support loading and visualizations of NCBI BLAST, InterPro, Kyoto Encyclopedia of Genes and Genomes and Gene Ontology analyses, as well as an extension that provides integration of Tripal with GBrowse, a popular GMOD tool. An Application Programming Interface is available to allow creation of custom extensions by site developers, and the look-and-feel of the site is completely customizable through Drupal-based PHP template files. Addition of non-biological content and user-management is afforded through Drupal. Tripal is an open source and freely available software package found at http://tripal.sourceforge.net.

  18. The Database Dilemma: Online Search Strategies in Nursing.

    Science.gov (United States)

    Fried, Ava K.; And Others

    1989-01-01

    Describes a study that compared the coverage of the nursing profession, subject heading specificity, and ease of retrieval of the MEDLINE and Nursing & Allied Health (CINAHL) online databases. The strengths and weaknesses of each database are discussed and hints for searching on both databases are provided. (four references) (CLB)

  19. Documenting Collective Development in Online Settings

    Science.gov (United States)

    Dean, Chrystal; Silverman, Jason

    2015-01-01

    In this paper the authors explored the question of collective understanding in online mathematics education settings and presented a brief overview of traditional methods for documenting norms and collective mathematical practices. A method for documenting collective development was proposed that builds on existing methods and frameworks yet is…

  20. A European Drought Reference Database: Design and Online Implementation

    NARCIS (Netherlands)

    Stagge, J.H.; Tallaksen, L.M.; Kohn, I.; Stahl, K.; Loon, van A.

    2013-01-01

    This report presents the structure and status of the online European Drought Reference (EDR) database. This website provides detailed historical information regarding major historical European drought events. Each drought event is summarized using climatological drought indices, hydrological drought

  1. Clinical decision support tools: analysis of online drug information databases

    Directory of Open Access Journals (Sweden)

    Seamon Matthew J

    2007-03-01

    Full Text Available Abstract Background Online drug information databases are used to assist in enhancing clinical decision support. However, the choice of which online database to consult, purchase or subscribe to is likely made based on subjective elements such as history of use, familiarity, or availability during professional training. The purpose of this study was to evaluate clinical decision support tools for drug information by systematically comparing the most commonly used online drug information databases. Methods Five commercially available and two freely available online drug information databases were evaluated according to scope (presence or absence of answer, completeness (the comprehensiveness of the answers, and ease of use. Additionally, a composite score integrating all three criteria was utilized. Fifteen weighted categories comprised of 158 questions were used to conduct the analysis. Descriptive statistics and Chi-square were used to summarize the evaluation components and make comparisons between databases. Scheffe's multiple comparison procedure was used to determine statistically different scope and completeness scores. The composite score was subjected to sensitivity analysis to investigate the effect of the choice of percentages for scope and completeness. Results The rankings for the databases from highest to lowest, based on composite scores were Clinical Pharmacology, Micromedex, Lexi-Comp Online, Facts & Comparisons 4.0, Epocrates Online Premium, RxList.com, and Epocrates Online Free. Differences in scope produced three statistical groupings with Group 1 (best performers being: Clinical Pharmacology, Micromedex, Facts & Comparisons 4.0, Lexi-Comp Online, Group 2: Epocrates Premium and RxList.com and Group 3: Epocrates Free (p Conclusion Online drug information databases, which belong to clinical decision support, vary in their ability to answer questions across a range of categories.

  2. Six Online Periodical Databases: A Librarian's View.

    Science.gov (United States)

    Willems, Harry

    1999-01-01

    Compares the following World Wide Web-based periodical databases, focusing on their usefulness in K-12 school libraries: EBSCO, Electric Library, Facts on File, SIRS, Wilson, and UMI. Search interfaces, display options, help screens, printing, home access, copyright restrictions, database administration, and making a decision are discussed. A…

  3. Effective Online Group Discovery in Trajectory Databases

    DEFF Research Database (Denmark)

    Li, Xiaohui; Ceikute, Vaida; Jensen, Christian S.;

    2013-01-01

    GPS-enabled devices are pervasive nowadays. Finding movement patterns in trajectory data stream is gaining in importance. We propose a group discovery framework that aims to efficiently support the online discovery of moving objects that travel together. The framework adopts a sampling...

  4. Effective Online Group Discovery in Trajectory Databases

    DEFF Research Database (Denmark)

    Li, Xiaohui; Ceikute, Vaida; Jensen, Christian S.

    2013-01-01

    GPS-enabled devices are pervasive nowadays. Finding movement patterns in trajectory data stream is gaining in importance. We propose a group discovery framework that aims to efficiently support the online discovery of moving objects that travel together. The framework adopts a sampling-independen...

  5. Distributed data collection for a database of radiological image interpretations

    Science.gov (United States)

    Long, L. Rodney; Ostchega, Yechiam; Goh, Gin-Hua; Thoma, George R.

    1997-01-01

    The National Library of Medicine, in collaboration with the National Center for Health Statistics and the National Institute for Arthritis and Musculoskeletal and Skin Diseases, has built a system for collecting radiological interpretations for a large set of x-ray images acquired as part of the data gathered in the second National Health and Nutrition Examination Survey. This system is capable of delivering across the Internet 5- and 10-megabyte x-ray images to Sun workstations equipped with X Window based 2048 X 2560 image displays, for the purpose of having these images interpreted for the degree of presence of particular osteoarthritic conditions in the cervical and lumbar spines. The collected interpretations can then be stored in a database at the National Library of Medicine, under control of the Illustra DBMS. This system is a client/server database application which integrates (1) distributed server processing of client requests, (2) a customized image transmission method for faster Internet data delivery, (3) distributed client workstations with high resolution displays, image processing functions and an on-line digital atlas, and (4) relational database management of the collected data.

  6. Proteomics: Protein Identification Using Online Databases

    Science.gov (United States)

    Eurich, Chris; Fields, Peter A.; Rice, Elizabeth

    2012-01-01

    Proteomics is an emerging area of systems biology that allows simultaneous study of thousands of proteins expressed in cells, tissues, or whole organisms. We have developed this activity to enable high school or college students to explore proteomic databases using mass spectrometry data files generated from yeast proteins in a college laboratory…

  7. Proteomics: Protein Identification Using Online Databases

    Science.gov (United States)

    Eurich, Chris; Fields, Peter A.; Rice, Elizabeth

    2012-01-01

    Proteomics is an emerging area of systems biology that allows simultaneous study of thousands of proteins expressed in cells, tissues, or whole organisms. We have developed this activity to enable high school or college students to explore proteomic databases using mass spectrometry data files generated from yeast proteins in a college laboratory…

  8. Collection development issues in the online environment

    National Research Council Canada - National Science Library

    Su, Di

    2007-01-01

    ...Cover:-~~ -~~·· -~--~~. -~·-~. -~. -~--~~ -~~·· -~--~~. -~·-~ -~~·· -~--~~ -~~·-~--~~ ·.~ DiSu Editor Collection Development Issues in the Online Environment...

  9. An Online Potato Pedigree Database Resource

    NARCIS (Netherlands)

    Berloo, van R.; Hutten, R.C.B.; Eck, van H.J.; Visser, R.G.F.

    2007-01-01

    At the Laboratory of Plant Breeding of Wageningen University, a large amount of pedigree data on current and historic potato cultivars and progenitors has been collected over many years. The sources and reasons for collection of these data are discussed. To allow others to use this data set for

  10. [Online tutorial for searching a dental database].

    Science.gov (United States)

    Liem, S L

    2009-05-01

    With millions of resources available on the Internet, it is still difficult to search for appropriate and relevant information, even with the use of advanced search engines. With no systematic quality control of online resources, it is difficult to determine how reliable information is. The consortium Intute, which administers a databank of high quality information available via the Internet, which is intended to support scientific teaching and research, ensures that all information provided has been evaluated and investigated by its own team of specialists in various disciplines. A part of the website of Intute which is accessible free of charge is the Virtual Training Suite, by means of which one can improve one's competence in Internet searching and where a number of reliable and qualitatively superior sources for daily practice are available.

  11. The Hawaiian Algal Database: a laboratory LIMS and online resource for biodiversity data

    Directory of Open Access Journals (Sweden)

    Sauvage Thomas

    2009-09-01

    Full Text Available Abstract Background Organization and presentation of biodiversity data is greatly facilitated by databases that are specially designed to allow easy data entry and organized data display. Such databases also have the capacity to serve as Laboratory Information Management Systems (LIMS. The Hawaiian Algal Database was designed to showcase specimens collected from the Hawaiian Archipelago, enabling users around the world to compare their specimens with our photographs and DNA sequence data, and to provide lab personnel with an organizational tool for storing various biodiversity data types. Description We describe the Hawaiian Algal Database, a comprehensive and searchable database containing photographs and micrographs, geo-referenced collecting information, taxonomic checklists and standardized DNA sequence data. All data for individual samples are linked through unique accession numbers. Users can search online for sample information by accession number, numerous levels of taxonomy, or collection site. At the present time the database contains data representing over 2,000 samples of marine, freshwater and terrestrial algae from the Hawaiian Archipelago. These samples are primarily red algae, although other taxa are being added. Conclusion The Hawaiian Algal Database is a digital repository for Hawaiian algal samples and acts as a LIMS for the laboratory. Users can make use of the online search tool to view and download specimen photographs and micrographs, DNA sequences and relevant habitat data, including georeferenced collecting locations. It is publicly available at http://algae.manoa.hawaii.edu.

  12. The Hawaiian Algal Database: a laboratory LIMS and online resource for biodiversity data.

    Science.gov (United States)

    Wang, Norman; Sherwood, Alison R; Kurihara, Akira; Conklin, Kimberly Y; Sauvage, Thomas; Presting, Gernot G

    2009-09-04

    Organization and presentation of biodiversity data is greatly facilitated by databases that are specially designed to allow easy data entry and organized data display. Such databases also have the capacity to serve as Laboratory Information Management Systems (LIMS). The Hawaiian Algal Database was designed to showcase specimens collected from the Hawaiian Archipelago, enabling users around the world to compare their specimens with our photographs and DNA sequence data, and to provide lab personnel with an organizational tool for storing various biodiversity data types. We describe the Hawaiian Algal Database, a comprehensive and searchable database containing photographs and micrographs, geo-referenced collecting information, taxonomic checklists and standardized DNA sequence data. All data for individual samples are linked through unique accession numbers. Users can search online for sample information by accession number, numerous levels of taxonomy, or collection site. At the present time the database contains data representing over 2,000 samples of marine, freshwater and terrestrial algae from the Hawaiian Archipelago. These samples are primarily red algae, although other taxa are being added. The Hawaiian Algal Database is a digital repository for Hawaiian algal samples and acts as a LIMS for the laboratory. Users can make use of the online search tool to view and download specimen photographs and micrographs, DNA sequences and relevant habitat data, including georeferenced collecting locations. It is publicly available at http://algae.manoa.hawaii.edu.

  13. Online Geophysical Databases for the Southern Ocean

    Science.gov (United States)

    Goodwillie, A.; O'Hara, S.; Arko, R.; Carbotte, S.; Ryan, W.; Melkonian, A.; Ferrini, V.; Weissel, R.; Bonczkowski, J.

    2007-12-01

    With funding from the U.S. National Science Foundation Office of Polar Programs, the Antarctic Multibeam Bathymetry Synthesis (AMBS, http://www.marine-geo.org/antarctic/) is an integrated web-accessible bathymetry and geophysical database for the Southern Ocean and Antarctica, serving data from the US research vessels Nathaniel B. Palmer and Laurence M. Gould, amongst others. Interdisciplinary polar data can be downloaded for free through the Data Link web browser interface (http://www.marine-geo.org/link/) which enables keyword searches by data and instrument type, geographical bounds, scientist, expedition name and dates. The free, platform-independent data visualization tool GeoMapApp (http://www.geomapapp.org/) supports dynamic exploration of a wide range of data sets on a Global Multi-Resolution Topography (GMRT) synthesis, including the polar regions, allowing users to generate custom grids and maps and import their own data sets and grids. A specialised polar stereographic map projection incorporating multibeam swath bathymetry and the BEDMAP under-ice seafloor topography is available for the Southern Ocean. The GMRT global digital elevation model is served freely as a Web Map Service layer and is available for viewing with OGC-compliant clients including Google Earth (http://www.marine-geo.org/Data4GoogleEarth.html). To promote interoperability and data sharing, we are working with research partners including the Marine Metadata Interoperability (MMI) project and the National Geophysical Data Center to develop standardised metadata and best practices that comply with existing FGDC and ISO standards. We are also taking on the US Antarctic Data Coordination Center function, assisting NSF-funded investigators in documenting and archiving their data in accordance with the IPY Data Policy.

  14. Online Database Editor Design for Web Based Distance Education

    Directory of Open Access Journals (Sweden)

    Mustafa Ali Akça

    2015-10-01

    Full Text Available Web-Based Distance Education every day continues to increase its influence in all areas. Informatics, especially in software training is widely used in web-based distance education. However, based on coding in a course with topics of mutual teacher / student interaction, also known to increase the success of the individual is a fact. In this study, software engineering, computer engineering, computer teacher and information technology departments, such as computer programming course to be used in the online database to MSSQL editor is designed as an employee. In this study, students entering the system assigned to them can create tables in the database online, it can add data to the tables and SQL queries can be run. Students in all of these studies, despite all the distance education classroom environment facility engages in close communication facilities.

  15. BBGD: an online database for blueberry genomic data

    Directory of Open Access Journals (Sweden)

    Matthews Benjamin F

    2007-01-01

    Full Text Available Abstract Background Blueberry is a member of the Ericaceae family, which also includes closely related cranberry and more distantly related rhododendron, azalea, and mountain laurel. Blueberry is a major berry crop in the United States, and one that has great nutritional and economical value. Extreme low temperatures, however, reduce crop yield and cause major losses to US farmers. A better understanding of the genes and biochemical pathways that are up- or down-regulated during cold acclimation is needed to produce blueberry cultivars with enhanced cold hardiness. To that end, the blueberry genomics database (BBDG was developed. Along with the analysis tools and web-based query interfaces, the database serves both the broader Ericaceae research community and the blueberry research community specifically by making available ESTs and gene expression data in searchable formats and in elucidating the underlying mechanisms of cold acclimation and freeze tolerance in blueberry. Description BBGD is the world's first database for blueberry genomics. BBGD is both a sequence and gene expression database. It stores both EST and microarray data and allows scientists to correlate expression profiles with gene function. BBGD is a public online database. Presently, the main focus of the database is the identification of genes in blueberry that are significantly induced or suppressed after low temperature exposure. Conclusion By using the database, researchers have developed EST-based markers for mapping and have identified a number of "candidate" cold tolerance genes that are highly expressed in blueberry flower buds after exposure to low temperatures.

  16. BBGD: an online database for blueberry genomic data.

    Science.gov (United States)

    Alkharouf, Nadim W; Dhanaraj, Anik L; Naik, Dhananjay; Overall, Chris; Matthews, Benjamin F; Rowland, Lisa J

    2007-01-30

    Blueberry is a member of the Ericaceae family, which also includes closely related cranberry and more distantly related rhododendron, azalea, and mountain laurel. Blueberry is a major berry crop in the United States, and one that has great nutritional and economical value. Extreme low temperatures, however, reduce crop yield and cause major losses to US farmers. A better understanding of the genes and biochemical pathways that are up- or down-regulated during cold acclimation is needed to produce blueberry cultivars with enhanced cold hardiness. To that end, the blueberry genomics database (BBDG) was developed. Along with the analysis tools and web-based query interfaces, the database serves both the broader Ericaceae research community and the blueberry research community specifically by making available ESTs and gene expression data in searchable formats and in elucidating the underlying mechanisms of cold acclimation and freeze tolerance in blueberry. BBGD is the world's first database for blueberry genomics. BBGD is both a sequence and gene expression database. It stores both EST and microarray data and allows scientists to correlate expression profiles with gene function. BBGD is a public online database. Presently, the main focus of the database is the identification of genes in blueberry that are significantly induced or suppressed after low temperature exposure. By using the database, researchers have developed EST-based markers for mapping and have identified a number of "candidate" cold tolerance genes that are highly expressed in blueberry flower buds after exposure to low temperatures.

  17. The Golosiiv on-line plate archive database, management and maintenance

    Science.gov (United States)

    Pakuliak, L.; Sergeeva, T.

    2007-08-01

    We intend to create online version of the database of the MAO NASU plate archive as VO-compatible structures in accordance with principles, developed by the International Virtual Observatory Alliance in order to make them available for world astronomical community. The online version of the log-book database is constructed by means of MySQL+PHP. Data management system provides a user with user interface, gives a capability of detailed traditional form-filling radial search of plates, obtaining some auxiliary sampling, the listing of each collection and permits to browse the detail descriptions of collections. The administrative tool allows database administrator the data correction, enhancement with new data sets and control of the integrity and consistence of the database as a whole. The VO-compatible database is currently constructing under the demands and in the accordance with principles of international data archives and has to be strongly generalized in order to provide a possibility of data mining by means of standard interfaces and to be the best fitted to the demands of WFPDB Group for databases of the plate catalogues. On-going enhancements of database toward the WFPDB bring the problem of the verification of data to the forefront, as it demands the high degree of data reliability. The process of data verification is practically endless and inseparable from data management owing to a diversity of data errors nature, that means to a variety of ploys of their identification and fixing. The current status of MAO NASU glass archive forces the activity in both directions simultaneously: the enhancement of log-book database with new sets of observational data as well as generalized database creation and the cross-identification between them. The VO-compatible version of the database is supplying with digitized data of plates obtained with MicroTek ScanMaker 9800 XL TMA. The scanning procedure is not total but is conducted selectively in the frames of special

  18. A Consolidated Online Database of Galactic Planetary Nebulae

    CERN Document Server

    Miszalski, B; Ochsenbein, F; Parker, Q A

    2011-01-01

    Since the unifying Strasbourg-ESO Catalogue of Galactic Planetary Nebulae (SECGPN) a large number of new discoveries have been made thanks to improved surveys and discovery techniques. The increasingly heterogeneous published population of Galactic PNe, that we have determined totals < 2850 PNe, is becoming more difficult to study on the whole without a centralised repository. We introduce a consolidated and interactive online database with object classifications that reflect the latest multi-wavelength data and the most recent results. The extensible database, hosted by the Centre de Donnees astronomique de Strasbourg (CDS), will contain a wealth of observed data for large, well-defined samples of PNe including coordinates, multi-wavelength images, spectroscopy, line intensities, radial velocities and central star information. It is anticipated that the database will be publicly released early 2012.

  19. Presidential Libraries Museum Collection Management Database

    Data.gov (United States)

    National Archives and Records Administration — MCMD serves as a descriptive catalog for the Presidential Libraries museum collections, and also supports a full range of museum collections management processes...

  20. The new on-line Czech Food Composition Database.

    Science.gov (United States)

    Machackova, Marie; Holasova, Marie; Maskova, Eva

    2013-10-01

    The new on-line Czech Food Composition Database (FCDB) was launched on http://www.czfcdb.cz in December 2010 as a main freely available channel for dissemination of Czech food composition data. The application is based on a complied FCDB documented according to the EuroFIR standardised procedure for full value documentation and indexing of foods by the LanguaL™ Thesaurus. A content management system was implemented for administration of the website and performing data export (comma-separated values or EuroFIR XML transport package formats) by a compiler. Reference/s are provided for each published value with linking to available freely accessible on-line sources of data (e.g. full texts, EuroFIR Document Repository, on-line national FCDBs). LanguaL™ codes are displayed within each food record as searchable keywords of the database. A photo (or a photo gallery) is used as a visual descriptor of a food item. The application is searchable on foods, components, food groups, alphabet and a multi-field advanced search. Copyright © 2013 Elsevier Ltd. All rights reserved.

  1. The Hawaiian Freshwater Algal Database (HfwADB): a laboratory LIMS and online biodiversity resource.

    Science.gov (United States)

    Sherwood, Alison R; Wang, Norman; Carlile, Amy L; Neumann, Jessica M; Wolfgruber, Thomas K; Presting, Gernot G

    2012-10-25

    Biodiversity databases serve the important role of highlighting species-level diversity from defined geographical regions. Databases that are specially designed to accommodate the types of data gathered during regional surveys are valuable in allowing full data access and display to researchers not directly involved with the project, while serving as a Laboratory Information Management System (LIMS). The Hawaiian Freshwater Algal Database, or HfwADB, was modified from the Hawaiian Algal Database to showcase non-marine algal specimens collected from the Hawaiian Archipelago by accommodating the additional level of organization required for samples including multiple species. The Hawaiian Freshwater Algal Database is a comprehensive and searchable database containing photographs and micrographs of samples and collection sites, geo-referenced collecting information, taxonomic data and standardized DNA sequence data. All data for individual samples are linked through unique 10-digit accession numbers ("Isolate Accession"), the first five of which correspond to the collection site ("Environmental Accession"). Users can search online for sample information by accession number, various levels of taxonomy, habitat or collection site. HfwADB is hosted at the University of Hawaii, and was made publicly accessible in October 2011. At the present time the database houses data for over 2,825 samples of non-marine algae from 1,786 collection sites from the Hawaiian Archipelago. These samples include cyanobacteria, red and green algae and diatoms, as well as lesser representation from some other algal lineages. HfwADB is a digital repository that acts as a Laboratory Information Management System for Hawaiian non-marine algal data. Users can interact with the repository through the web to view relevant habitat data (including geo-referenced collection locations) and download images of collection sites, specimen photographs and micrographs, and DNA sequences. It is publicly

  2. The Hawaiian Freshwater Algal Database (HfwADB: a laboratory LIMS and online biodiversity resource

    Directory of Open Access Journals (Sweden)

    Sherwood Alison R

    2012-10-01

    Full Text Available Abstract Background Biodiversity databases serve the important role of highlighting species-level diversity from defined geographical regions. Databases that are specially designed to accommodate the types of data gathered during regional surveys are valuable in allowing full data access and display to researchers not directly involved with the project, while serving as a Laboratory Information Management System (LIMS. The Hawaiian Freshwater Algal Database, or HfwADB, was modified from the Hawaiian Algal Database to showcase non-marine algal specimens collected from the Hawaiian Archipelago by accommodating the additional level of organization required for samples including multiple species. Description The Hawaiian Freshwater Algal Database is a comprehensive and searchable database containing photographs and micrographs of samples and collection sites, geo-referenced collecting information, taxonomic data and standardized DNA sequence data. All data for individual samples are linked through unique 10-digit accession numbers (“Isolate Accession”, the first five of which correspond to the collection site (“Environmental Accession”. Users can search online for sample information by accession number, various levels of taxonomy, habitat or collection site. HfwADB is hosted at the University of Hawaii, and was made publicly accessible in October 2011. At the present time the database houses data for over 2,825 samples of non-marine algae from 1,786 collection sites from the Hawaiian Archipelago. These samples include cyanobacteria, red and green algae and diatoms, as well as lesser representation from some other algal lineages. Conclusions HfwADB is a digital repository that acts as a Laboratory Information Management System for Hawaiian non-marine algal data. Users can interact with the repository through the web to view relevant habitat data (including geo-referenced collection locations and download images of collection sites, specimen

  3. A new online database of nuclear electromagnetic moments

    Science.gov (United States)

    Mertzimekis, Theo J.

    2017-09-01

    Nuclear electromagnetic (EM) moments, i.e., the magnetic dipole and the electric quadrupole moments, provide important information of nuclear structure. As in other types of experimental data available to the community, measurements of nuclear EM moments have been organized systematically in compilations since the dawn of nuclear science. However, the wealth of recent moments measurements with radioactive beams, as well as earlier existing measurements, lack an online, easy-to-access, systematically organized presence to disseminate information to researchers. In addition, available printed compilations suffer a rather long life cycle, being left behind experimental measurements published in journals or elsewhere. A new, online database (http://magneticmoments.info">http://magneticmoments.info) focusing on nuclear EM moments has been recently developed to disseminate experimental data to the community. The database includes non-evaluated experimental data of nuclear EM moments, giving strong emphasis on frequent updates (life cycle is 3 months) and direct connection to the sources via DOI and NSR hyperlinks. It has been recently integrated in IAEA LiveChart [1], but can also be found as a standalone webapp [2]. A detailed review of the database features, as well as plans for further development and expansion in the near future is discussed.

  4. THE GB/3D Fossil Types Online Database

    Science.gov (United States)

    Howe, M. P.; McCormick, T.

    2012-12-01

    The ICZN and the International Code of Nomenclature for algae, fungi and plants require that every species or subspecies of organism (living & fossil), should have a type or reference specimen to define its characteristic features. These specimens are held in collections around the world and must be available for study. Over time, type specimens can deteriorate or become lost. The British Geological Survey, the National Museum of Wales, the Sedgwick Museum Cambridge and the Oxford Museum of Natural History are working together to create an online database of the type fossils they hold. The web portal provides data about each specimen, searchable on taxonomic, stratigraphic and spatial criteria. For each specimen it is possible to view and download high resolution photographs, and for many of them, 'anaglyph' stereo pairs and 3D scans are available. The portal also provides educational resources (OERs). The rise to prominence of the Web has transformed expectations in accessing information and the Web is now usually the first port of call. However, while many geological museums are providing web-searchable text catalogues, few have undertaken a large-scale program of providing images and 3D models. This project has tackled the issues of merging four distinct data holdings, and setting up workflows to image and scan large numbers of disparate fossils, ranging from small invertebrate macrofossils to large vertebrate skeletal elements. There are three advantages in providing such resources: (1) All users can exploit the collections more efficiently. End-users can view specimens remotely and assess their nature, preservation quality and completeness - in some cases this may be sufficient. It will reduce the need for institutions to send specimens (which are often fragile and always irreplaceable) to researchers by post, or for researchers to make possibly long, expensive and environmentally damaging journeys. (2) A public outreach and education dividend - the ability to

  5. Records for Electronic Databases in the Online Catalog at Middle Tennessee State University

    Science.gov (United States)

    Geckle, Beverly J.; Pozzebon, Mary Ellen; Williams, Jo

    2008-01-01

    This article recounts a project at the Middle Tennessee State University library to include records for electronic databases in the online catalog. Although electronic databases are accessible via the library's Databases A-Z list and related subject guides, cataloging these resources also provides access via the online catalog, allowing more of…

  6. A new on-line electrocardiographic records database and computer routines for data analysis.

    Science.gov (United States)

    Ledezma, Carlos A; Severeyn, Erika; Perpiñán, Gilberto; Altuve, Miguel; Wong, Sara

    2014-01-01

    Gathering experimental data to test computer methods developed during a research is a hard work. Nowadays, some databases have been stored online that can be freely downloaded, however there is not a wide range of databases yet and not all pathologies are covered. Researchers with low resources are in need of more data they can consult for free. To cope with this we present an on-line portal containing a compilation of ECG databases recorded over the last two decades for research purposes. The first version of this portal contains four databases of ECG records: ischemic cardiopathy (72 patients, 3-lead ECG each), ischemic preconditioning (20 patients, 3-lead ECG each), diabetes (51 patients, 8-lead ECG each) and metabolic syndrome (25 subjects, 12-lead ECG each). In addition, one computer program and three routines are provided in order to correctly read the signals, and two digital filters along with two ECG waves detectors are provided for further processing. This portal will be constantly growing, other ECG databases and signal processing software will be uploaded. With this project, we give the scientific community a resource to avoid hours of data collection and to develop free software.

  7. EXPANDING ACADEMIC VOCABULARY WITH AN INTERACTIVE ON-LINE DATABASE

    Directory of Open Access Journals (Sweden)

    Marlise Horst

    2005-05-01

    Full Text Available University students used a set of existing and purpose-built on-line tools for vocabulary learning in an experimental ESL course. The resources included concordance, dictionary, cloze-builder, hypertext, and a database with interactive self-quizzing feature (all freely available at www.lextutor.ca. The vocabulary targeted for learning consisted of (a Coxhead's (2000 Academic Word List, a list of items that occur frequently in university textbooks, and (b unfamiliar words students had met in academic texts and selected for entry into the class database. The suite of tools were designed to foster retention by engaging learners in deep processing, an aspect that is often described as missing in computer exercises for vocabulary learning. Database entries were examined to determine whether context sentences supported word meanings adequately and whether entered words reflected the unavailability of cognates in the various first languages of the participants. Pre- and post-treatment performance on tests of knowledge of words targeted for learning in the course were compared to establish learning gains. Regression analyses investigated connections between use of specific computer tools and gains.

  8. Organic materials database: An open-access online database for data mining

    Science.gov (United States)

    Geilhufe, R. Matthias; Balatsky, Alexander V.

    2017-01-01

    We present an organic materials database (OMDB) hosting thousands of Kohn-Sham electronic band structures, which is freely accessible online at http://omdb.diracmaterials.org. The OMDB focus lies on electronic structure, density of states and other properties for purely organic and organometallic compounds that are known to date. The electronic band structures are calculated using density functional theory for the crystal structures contained in the Crystallography Open Database. The OMDB web interface allows users to retrieve materials with specified target properties using non-trivial queries about their electronic structure. We illustrate the use of the OMDB and how it can become an organic part of search and prediction of novel functional materials via data mining techniques. As a specific example, we provide data mining results for metals and semiconductors, which are known to be rare in the class of organic materials. PMID:28182744

  9. Organic materials database: An open-access online database for data mining.

    Science.gov (United States)

    Borysov, Stanislav S; Geilhufe, R Matthias; Balatsky, Alexander V

    2017-01-01

    We present an organic materials database (OMDB) hosting thousands of Kohn-Sham electronic band structures, which is freely accessible online at http://omdb.diracmaterials.org. The OMDB focus lies on electronic structure, density of states and other properties for purely organic and organometallic compounds that are known to date. The electronic band structures are calculated using density functional theory for the crystal structures contained in the Crystallography Open Database. The OMDB web interface allows users to retrieve materials with specified target properties using non-trivial queries about their electronic structure. We illustrate the use of the OMDB and how it can become an organic part of search and prediction of novel functional materials via data mining techniques. As a specific example, we provide data mining results for metals and semiconductors, which are known to be rare in the class of organic materials.

  10. Utility of collecting metadata to manage a large scale conditions database in ATLAS

    CERN Document Server

    Gallas, EJ; The ATLAS collaboration; Borodin, M; Formica, A

    2014-01-01

    The ATLAS Conditions Database, based on the LCG Conditions Database infrastructure, contains a wide variety of information needed in online data taking and offline analysis. The total volume of ATLAS conditions data is in the multi-Terabyte range. Internally, the active data is divided into 65 separate schemas (each with hundreds of underlying tables) according to overall data taking type, detector subsystem, and whether the data is used offline or strictly online. While each schema has a common infrastructure, each schema's data is entirely independent of other schemas, except at the highest level, where sets of conditions from each subsystem are tagged globally for ATLAS event data reconstruction and reprocessing. The partitioned nature of the conditions infrastructure works well for most purposes, but metadata about each schema is problematic to collect in global tools from such a system because it is only accessible via LCG tools schema by schema. This makes it difficult to get an overview of all schemas,...

  11. Data collection procedures for the Software Engineering Laboratory (SEL) database

    Science.gov (United States)

    Heller, Gerard; Valett, Jon; Wild, Mary

    1992-01-01

    This document is a guidebook to collecting software engineering data on software development and maintenance efforts, as practiced in the Software Engineering Laboratory (SEL). It supersedes the document entitled Data Collection Procedures for the Rehosted SEL Database, number SEL-87-008 in the SEL series, which was published in October 1987. It presents procedures to be followed on software development and maintenance projects in the Flight Dynamics Division (FDD) of Goddard Space Flight Center (GSFC) for collecting data in support of SEL software engineering research activities. These procedures include detailed instructions for the completion and submission of SEL data collection forms.

  12. HIP2: An online database of human plasma proteins from healthy individuals

    Directory of Open Access Journals (Sweden)

    Shen Changyu

    2008-04-01

    Full Text Available Abstract Background With the introduction of increasingly powerful mass spectrometry (MS techniques for clinical research, several recent large-scale MS proteomics studies have sought to characterize the entire human plasma proteome with a general objective for identifying thousands of proteins leaked from tissues in the circulating blood. Understanding the basic constituents, diversity, and variability of the human plasma proteome is essential to the development of sensitive molecular diagnosis and treatment monitoring solutions for future biomedical applications. Biomedical researchers today, however, do not have an integrated online resource in which they can search for plasma proteins collected from different mass spectrometry platforms, experimental protocols, and search software for healthy individuals. The lack of such a resource for comparisons has made it difficult to interpret proteomics profile changes in patients' plasma and to design protein biomarker discovery experiments. Description To aid future protein biomarker studies of disease and health from human plasma, we developed an online database, HIP2 (Healthy Human Individual's Integrated Plasma Proteome. The current version contains 12,787 protein entries linked to 86,831 peptide entries identified using different MS platforms. Conclusion This web-based database will be useful to biomedical researchers involved in biomarker discovery research. This database has been developed to be the comprehensive collection of healthy human plasma proteins, and has protein data captured in a relational database schema built to contain mappings of supporting peptide evidence from several high-quality and high-throughput mass-spectrometry (MS experimental data sets. Users can search for plasma protein/peptide annotations, peptide/protein alignments, and experimental/sample conditions with options for filter-based retrieval to achieve greater analytical power for discovery and validation.

  13. The Study of Tax Collection on Online Games’ Virtual Properties

    Science.gov (United States)

    Zhaohui, Liu; Xiaomeng, Sun

    with the development and popularization of online games, virtual network world becomes an inseparable part of people's life, and the network virtual property also forms immediately. Our country's online game industry develops rapidly, and it involves a great amount of virtual property. Our country's tax law today has not established a sound tax collection system aiming at virtual property; academic circle does not pay enough attention to it, either; judicial practice calls for filling the gap in tax law field as soon as possible and taking virtual property into tax collection scope. This article mainly explores how to make tax collection on online games' virtual property more rational, legitimate and feasible; how to determine tax collection on virtual property: subject of tax payment, tax category, choosing of tax item, calculation on tax payable, and so on whereby this article proposes advice on perfecting processing problem of tax collection on virtual property.

  14. Genetic basis of congenital erythrocytosis: mutation update and online databases.

    Science.gov (United States)

    Bento, Celeste; Percy, Melanie J; Gardie, Betty; Maia, Tabita Magalhães; van Wijk, Richard; Perrotta, Silverio; Della Ragione, Fulvio; Almeida, Helena; Rossi, Cedric; Girodon, François; Aström, Maria; Neumann, Drorit; Schnittger, Susanne; Landin, Britta; Minkov, Milen; Randi, Maria Luigia; Richard, Stéphane; Casadevall, Nicole; Vainchenker, William; Rives, Susana; Hermouet, Sylvie; Ribeiro, M Leticia; McMullin, Mary Frances; Cario, Holger; Chauveau, Aurelie; Gimenez-Roqueplo, Anne-Paule; Bressac-de-Paillerets, Brigitte; Altindirek, Didem; Lorenzo, Felipe; Lambert, Frederic; Dan, Harlev; Gad-Lapiteau, Sophie; Catarina Oliveira, Ana; Rossi, Cédric; Fraga, Cristina; Taradin, Gennadiy; Martin-Nuñez, Guillermo; Vitória, Helena; Diaz Aguado, Herrera; Palmblad, Jan; Vidán, Julia; Relvas, Luis; Ribeiro, Maria Leticia; Luigi Larocca, Maria; Luigia Randi, Maria; Pedro Silveira, Maria; Percy, Melanie; Gross, Mor; Marques da Costa, Ricardo; Beshara, Soheir; Ben-Ami, Tal; Ugo, Valérie

    2014-01-01

    Congenital erythrocytosis (CE), or congenital polycythemia, represents a rare and heterogeneous clinical entity. It is caused by deregulated red blood cell production where erythrocyte overproduction results in elevated hemoglobin and hematocrit levels. Primary congenital familial erythrocytosis is associated with low erythropoietin (Epo) levels and results from mutations in the Epo receptor gene (EPOR). Secondary CE arises from conditions causing tissue hypoxia and results in increased Epo production. These include hemoglobin variants with increased affinity for oxygen (HBB, HBA mutations), decreased production of 2,3-bisphosphoglycerate due to BPGM mutations, or mutations in the genes involved in the hypoxia sensing pathway (VHL, EPAS1, and EGLN1). Depending on the affected gene, CE can be inherited either in an autosomal dominant or recessive mode, with sporadic cases arising de novo. Despite recent important discoveries in the molecular pathogenesis of CE, the molecular causes remain to be identified in about 70% of the patients. With the objective of collecting all the published and unpublished cases of CE the COST action MPN&MPNr-Euronet developed a comprehensive Internet-based database focusing on the registration of clinical history, hematological, biochemical, and molecular data (http://www.erythrocytosis.org/). In addition, unreported mutations are also curated in the corresponding Leiden Open Variation Database.

  15. PREFERENSI PEMUSTAKA DALAM MENYUSUN TUGAS AKHlR (SKRIPSl/ TESIS/DISERTASI MENGGUNAKAAN SUMBER INFORMASI DATABASE ONLINE

    Directory of Open Access Journals (Sweden)

    Uminurida Suciati

    2015-11-01

    While the use of internet is 3-5 hour a day, the use of online darabases as references in write rhe thesis mtd dissertation is 83.1 %. The research show that the users who access of the information sources using online databases in the library of the Faculty of Philosophy of Gadjah Mada University to writes the thesis mul dissertation is more than the users who looks for print reforences in the Library of the Faculty of Philosophy of Gadjah Mada University to writes the thesis and dissertation. The t«ers choose the online databases as a means of accessing i'![ormation because of low cost, the information is up dare, and complete, it can used to shore the in.fonnarion, and easy to use depend use prim collection in the library.

  16. Strategies for the sustainability of online open-access biodiversity databases

    OpenAIRE

    Costello, Mark J.; Appeltans, Ward; Bailly, Nicolas; Berendsohn, Walter G.; de Jong, Yde; Edwards, Martin; Froese, Rainer; Huettmann, Falk; Los, Wouter; Mees, Jan; Segers, Hendrik; Bisby, Frank A.

    2014-01-01

    Highlights: • Open-access online scholarly biodiversity databases are threatened by a lack of funding and institutional support. • Strategic approaches to aid sustainability are summarised. • Issues include database coverage, quality, uniqueness; clarity of Intellectual Property Rights, ownership and governance. • Long-term support from institutions and scientists is easier for high-quality, comprehensive, prestigious global databases. • Larger multi-partner governed databases ...

  17. Online database for mosquito (Diptera, Culicidae) occurrence records in French Guiana.

    Science.gov (United States)

    Talaga, Stanislas; Murienne, Jérôme; Dejean, Alain; Leroy, Céline

    2015-01-01

    A database providing information on mosquito specimens (Arthropoda: Diptera: Culicidae) collected in French Guiana is presented. Field collections were initiated in 2013 under the auspices of the CEnter for the study of Biodiversity in Amazonia (CEBA: http://www.labexceba.fr/en/). This study is part of an ongoing process aiming to understand the distribution of mosquitoes, including vector species, across French Guiana. Occurrences are recorded after each collecting trip in a database managed by the laboratory Evolution et Diversité Biologique (EDB), Toulouse, France. The dataset is updated monthly and is available online. Voucher specimens and their associated DNA are stored at the laboratory Ecologie des Forêts de Guyane (Ecofog), Kourou, French Guiana. The latest version of the dataset is accessible through EDB's Integrated Publication Toolkit at http://130.120.204.55:8080/ipt/resource.do?r=mosquitoes_of_french_guiana or through the Global Biodiversity Information Facility data portal at http://www.gbif.org/dataset/5a8aa2ad-261c-4f61-a98e-26dd752fe1c5 It can also be viewed through the Guyanensis platform at http://guyanensis.ups-tlse.fr.

  18. Review and Comparison of the Search Effectiveness and User Interface of Three Major Online Chemical Databases

    Science.gov (United States)

    Bharti, Neelam; Leonard, Michelle; Singh, Shailendra

    2016-01-01

    Online chemical databases are the largest source of chemical information and, therefore, the main resource for retrieving results from published journals, books, patents, conference abstracts, and other relevant sources. Various commercial, as well as free, chemical databases are available. SciFinder, Reaxys, and Web of Science are three major…

  19. Evaluation of an Online Instructional Database Accessed by QR Codes to Support Biochemistry Practical Laboratory Classes

    Science.gov (United States)

    Yip, Tor; Melling, Louise; Shaw, Kirsty J.

    2016-01-01

    An online instructional database containing information on commonly used pieces of laboratory equipment was created. In order to make the database highly accessible and to promote its use, QR codes were utilized. The instructional materials were available anytime and accessed using QR codes located on the equipment itself and within undergraduate…

  20. Review and Comparison of the Search Effectiveness and User Interface of Three Major Online Chemical Databases

    Science.gov (United States)

    Bharti, Neelam; Leonard, Michelle; Singh, Shailendra

    2016-01-01

    Online chemical databases are the largest source of chemical information and, therefore, the main resource for retrieving results from published journals, books, patents, conference abstracts, and other relevant sources. Various commercial, as well as free, chemical databases are available. SciFinder, Reaxys, and Web of Science are three major…

  1. Using online databases for landslide susceptibility assessment: an example from the Veneto Region (northeastern Italy

    Directory of Open Access Journals (Sweden)

    M. Floris

    2011-07-01

    Full Text Available In this paper, spatial data available in the Italian portals was used to evaluate the landslide susceptibility of the Euganean Hills Regional Park, located SW of Padua (northeastern Italy. Quality, applicability and possible analysis scales of the online data were investigated.

    After a brief overview on the WebGIS portals around the world, their contents and tools for natural risk analyses, a susceptibility analysis of the study area was carried out using a simple probabilistic approach that compared landslide distribution and influencing factors. The input factors used in the analysis depended on available data and included landslides, morphometric data (elevation, slope, curvature, profile and plan Curvature and non-morphometric data (land use, distance to roads and distance to rivers. Great attention was paid to the pre-processing step, in particular the re-classification of continuous data that was performed following objective, geologic and geomorphologic criteria.

    The results of the study show that the simple probabilistic approach used for the susceptibility evaluation showed quite good accuracy and precision (repeatability. However, heuristic, statistical or deterministic methods could be applied to the online data to improve the prediction.

    The data available online for the Italian territory allows susceptibility assessment at medium and large scales. Morphometric factors, such as elevation and slope angle, are important because they implicitly include information that is not available, such as lithologic and structural data. The main drawback of the Italian online databases is the lack of information on the frequency of landslides; thus, a complete hazard analysis is not possible.

    Despite the good results achieved to date, collection and sharing of data on natural risks must be improved in Italy and around the world. The creation of spatial data infrastructure and more WebGIS portals is desirable.

  2. Using online databases for landslide susceptibility assessment: an example from the Veneto Region (northeastern Italy)

    Science.gov (United States)

    Floris, M.; Iafelice, M.; Squarzoni, C.; Zorzi, L.; de Agostini, A.; Genevois, R.

    2011-07-01

    In this paper, spatial data available in the Italian portals was used to evaluate the landslide susceptibility of the Euganean Hills Regional Park, located SW of Padua (northeastern Italy). Quality, applicability and possible analysis scales of the online data were investigated. After a brief overview on the WebGIS portals around the world, their contents and tools for natural risk analyses, a susceptibility analysis of the study area was carried out using a simple probabilistic approach that compared landslide distribution and influencing factors. The input factors used in the analysis depended on available data and included landslides, morphometric data (elevation, slope, curvature, profile and plan Curvature) and non-morphometric data (land use, distance to roads and distance to rivers). Great attention was paid to the pre-processing step, in particular the re-classification of continuous data that was performed following objective, geologic and geomorphologic criteria. The results of the study show that the simple probabilistic approach used for the susceptibility evaluation showed quite good accuracy and precision (repeatability). However, heuristic, statistical or deterministic methods could be applied to the online data to improve the prediction. The data available online for the Italian territory allows susceptibility assessment at medium and large scales. Morphometric factors, such as elevation and slope angle, are important because they implicitly include information that is not available, such as lithologic and structural data. The main drawback of the Italian online databases is the lack of information on the frequency of landslides; thus, a complete hazard analysis is not possible. Despite the good results achieved to date, collection and sharing of data on natural risks must be improved in Italy and around the world. The creation of spatial data infrastructure and more WebGIS portals is desirable.

  3. Bridging Women Rights Networks: Analyzing Interconnected Online Collective Actions

    OpenAIRE

    Serpil T. Yuce; Nitin Agarwal; Wigand, Rolf T.; Merlyna Lim; Rebecca S. Robinson

    2014-01-01

    In recent mass protests such as the Arab Spring and Occupy movements, protesters used social media to spread awareness, coordinate, and mobilize support. Social media-assisted collective action has attracted much attention from journalists, political observers, and researchers of various disciplines. In this article, the authors study transnational online collective action through the lens of inter-network cooperation. The authors analyze interaction and support between the women's rights net...

  4. Ability of online drug databases to assist in clinical decision-making with infectious disease therapies

    OpenAIRE

    Jebrock Jennifer; Clauson Kevin A; Zapantis Antonia; Polen Hyla H; Paris Mark

    2008-01-01

    Abstract Background Infectious disease (ID) is a dynamic field with new guidelines being adopted at a rapid rate. Clinical decision support tools (CDSTs) have proven beneficial in selecting treatment options to improve outcomes. However, there is a dearth of information on the abilities of CDSTs, such as drug information databases. This study evaluated online drug information databases when answering infectious disease-specific queries. Methods Eight subscription drug information databases: A...

  5. HPD: an online integrated human pathway database enabling systems biology studies.

    Science.gov (United States)

    Chowbina, Sudhir R; Wu, Xiaogang; Zhang, Fan; Li, Peter M; Pandey, Ragini; Kasamsetty, Harini N; Chen, Jake Y

    2009-10-08

    Pathway-oriented experimental and computational studies have led to a significant accumulation of biological knowledge concerning three major types of biological pathway events: molecular signaling events, gene regulation events, and metabolic reaction events. A pathway consists of a series of molecular pathway events that link molecular entities such as proteins, genes, and metabolites. There are approximately 300 biological pathway resources as of April 2009 according to the Pathguide database; however, these pathway databases generally have poor coverage or poor quality, and are difficult to integrate, due to syntactic-level and semantic-level data incompatibilities. We developed the Human Pathway Database (HPD) by integrating heterogeneous human pathway data that are either curated at the NCI Pathway Interaction Database (PID), Reactome, BioCarta, KEGG or indexed from the Protein Lounge Web sites. Integration of pathway data at syntactic, semantic, and schematic levels was based on a unified pathway data model and data warehousing-based integration techniques. HPD provides a comprehensive online view that connects human proteins, genes, RNA transcripts, enzymes, signaling events, metabolic reaction events, and gene regulatory events. At the time of this writing HPD includes 999 human pathways and more than 59,341 human molecular entities. The HPD software provides both a user-friendly Web interface for online use and a robust relational database backend for advanced pathway querying. This pathway tool enables users to 1) search for human pathways from different resources by simply entering genes/proteins involved in pathways or words appearing in pathway names, 2) analyze pathway-protein association, 3) study pathway-pathway similarity, and 4) build integrated pathway networks. We demonstrated the usage and characteristics of the new HPD through three breast cancer case studies. HPD http://bio.informatics.iupui.edu/HPD is a new resource for searching, managing

  6. Field Validation of Food Service Listings: A Comparison of Commercial and Online Geographic Information System Databases

    Science.gov (United States)

    Seliske, Laura; Pickett, William; Bates, Rebecca; Janssen, Ian

    2012-01-01

    Many studies examining the food retail environment rely on geographic information system (GIS) databases for location information. The purpose of this study was to validate information provided by two GIS databases, comparing the positional accuracy of food service places within a 1 km circular buffer surrounding 34 schools in Ontario, Canada. A commercial database (InfoCanada) and an online database (Yellow Pages) provided the addresses of food service places. Actual locations were measured using a global positioning system (GPS) device. The InfoCanada and Yellow Pages GIS databases provided the locations for 973 and 675 food service places, respectively. Overall, 749 (77.1%) and 595 (88.2%) of these were located in the field. The online database had a higher proportion of food service places found in the field. The GIS locations of 25% of the food service places were located within approximately 15 m of their actual location, 50% were within 25 m, and 75% were within 50 m. This validation study provided a detailed assessment of errors in the measurement of the location of food service places in the two databases. The location information was more accurate for the online database, however, when matching criteria were more conservative, there were no observed differences in error between the databases. PMID:23066385

  7. Field validation of food service listings: a comparison of commercial and online geographic information system databases.

    Science.gov (United States)

    Seliske, Laura; Pickett, William; Bates, Rebecca; Janssen, Ian

    2012-08-01

    Many studies examining the food retail environment rely on geographic information system (GIS) databases for location information. The purpose of this study was to validate information provided by two GIS databases, comparing the positional accuracy of food service places within a 1 km circular buffer surrounding 34 schools in Ontario, Canada. A commercial database (InfoCanada) and an online database (Yellow Pages) provided the addresses of food service places. Actual locations were measured using a global positioning system (GPS) device. The InfoCanada and Yellow Pages GIS databases provided the locations for 973 and 675 food service places, respectively. Overall, 749 (77.1%) and 595 (88.2%) of these were located in the field. The online database had a higher proportion of food service places found in the field. The GIS locations of 25% of the food service places were located within approximately 15 m of their actual location, 50% were within 25 m, and 75% were within 50 m. This validation study provided a detailed assessment of errors in the measurement of the location of food service places in the two databases. The location information was more accurate for the online database, however, when matching criteria were more conservative, there were no observed differences in error between the databases.

  8. A Simple Generative Model of Collective Online Behaviour

    CERN Document Server

    Gleeson, James P; Onnela, Jukka-Pekka; Porter, Mason A; Reed-Tsochas, Felix

    2013-01-01

    Human activities---from voter mobilization to political protests---increasingly take place in online environments, providing novel opportunities for relating individual behaviours to population-level outcomes. The recent availability of data sets that capture the behaviour of individuals participating in online social systems has driven the emerging field of computational social science, as large-scale empirical data sets enable the development of detailed computational models of individual and collective behaviour. Given the inherent limitations of observational data, it is crucial to investigate the extent to which models of collective dynamics can distinguish between different individual-level mechanisms. Here we introduce a simple generative model for the collective behaviour of millions of social networking site users who are deciding between different software applications. Our model incorporates two distinct components: one is associated with recent decisions of users, and the other reflects the cumula...

  9. 76 FR 62096 - Revision of Information Collection: OPM Online Form 1417

    Science.gov (United States)

    2011-10-06

    ... MANAGEMENT Revision of Information Collection: OPM Online Form 1417 AGENCY: Office of Personnel Management... an information collection. OPM Online Form 1417, the Combined Federal Campaign (CFC) Information... contact information. The proposed revisions remove data that is collected from other sources...

  10. A student's guide to searching the literature using online databases

    CERN Document Server

    Miller, Casey W; Messina, Troy C

    2010-01-01

    A method is described to empower students to efficiently perform general and literature searches using online resources. The method was tested on undergraduate and graduate students with varying backgrounds with scientific literature. Students involved in this study showed marked improvement in their awareness of how and where to find accurate scientific information.

  11. Volcanic hazard in Mexico: a comprehensive on-line database for risk mitigation

    Science.gov (United States)

    Manea, Marina; Constantin Manea, Vlad; Capra, Lucia; Bonasia, Rosanna

    2013-04-01

    Researchers are currently working on several key aspects of the Mexican volcanoes, such as remote sensing, field data of old and recent volcaniclastic deposits, structural framework, monitoring (rainfall data and visual observation of lahars), and laboratory experiment (analogue models and numerical simulations - fall3D, titan2D). Each investigation is focused on specific processes, but it is fundamental to visualize the global status of the volcano in order to understand its behavior and to mitigate future hazards. The Mexican Volcanoes @nline represents a novel initiative aimed to collect, on a systematic basis, the complete set of data obtained so far on the volcanoes, and to continuously update the database with new data. All the information is compiled from published works and updated frequently. Maps, such as the geological map of the Mexican volcanos and the associated hazard zonation, as well as point data, such as stratigraphic sections, sedimentology and diagrams of rainfall intensities, are presented in Google Earth format in order to be easily accessed by the scientific community and the general public. An important section of this online database is the presentation of numerical simulations results for ash dispersion associated with the principal Mexican active volcanoes. Daily prediction of ash flow dispersion (based on real-time data from CENAPRED and the Mexican Meteorological Service), as well as large-scale high-resolution subduction simulations performed on HORUS (the Computational Geodynamics Laboratory's supercomputer) represent a central part of the Mexican Volcanos @nline database. The Mexican Volcanoes @nline database is maintained by the Computational Geodynamics Laboratory and it is based entirely on Open Source software. The website can be visited at: http://www.geociencias.unam.mx/mexican_volcanoes.

  12. VentDB: A Global Online Synthesis Database of Seafloor Hydrothermal Spring Geochemistry

    Science.gov (United States)

    Mottl, M. J.; Lehnert, K. A.; Johansson, A. K.; Hsu, L.

    2011-12-01

    Chemical data for seafloor hydrothermal springs are fundamental to the study of mid-ocean ridge and seafloor processes, ocean water chemistry, and global geochemical cycles, as well as vent ecosystems and the sub-seafloor biosphere. So far, these data have been accessible only in the scientific literature or in online data catalogs where they are widely dispersed in individual data tables, and are often insufficiently documented for re-use. We have developed VentDB as an online data system for geochemical data for hydrothermal springs that will facilitate access and analysis of these data. VentDB uses the concept and architecture of the popular PetDB database for seafloor igneous and metamorphic rock geochemistry (www.petdb.org) to provide easy and fast access to a global synthesis of seafloor hydrothermal spring geochemical data. The VentDB database contains concentrations of major and trace species, dissolved gases, and radiogenic and isotopic ratios for hydrothermal vents on the seafloor. Further chemical or physical properties of hydrothermal springs can be included in the future if desired. The database comprises both the calculated hydrothermal end-member solution compositions as estimated by extrapolation of the concentrations of individual chemical species to a Mg concentration of zero, and the raw data for hydrothermal solution samples as collected, where available. Data quality is documented by including information for the raw analytical data about the analytical method, precision, and reference material measurements, and quality control parameters for end-member compositions including the lowest Mg measured in any sample, the number of samples and correlation coefficient of the linear regression, and the charge balance for the extrapolated zero-Mg composition. The database also includes information about the sampled locations (geospatial coordinates, vent or vent field names, names of other physiographic features), temperature, flow and vent type

  13. OCDB: a database collecting genes, miRNAs and drugs for obsessive-compulsive disorder.

    Science.gov (United States)

    Privitera, Anna P; Distefano, Rosario; Wefer, Hugo A; Ferro, Alfredo; Pulvirenti, Alfredo; Giugno, Rosalba

    2015-01-01

    Obsessive-compulsive disorder (OCD) is a psychiatric condition characterized by intrusive and unwilling thoughts (obsessions) giving rise to anxiety. The patients feel obliged to perform a behavior (compulsions) induced by the obsessions. The World Health Organization ranks OCD as one of the 10 most disabling medical conditions. In the class of Anxiety Disorders, OCD is a pathology that shows an hereditary component. Consequently, an online resource collecting and integrating scientific discoveries and genetic evidence about OCD would be helpful to improve the current knowledge on this disorder. We have developed a manually curated database, OCD Database (OCDB), collecting the relations between candidate genes in OCD, microRNAs (miRNAs) involved in the pathophysiology of OCD and drugs used in its treatments. We have screened articles from PubMed and MEDLINE. For each gene, the bibliographic references with a brief description of the gene and the experimental conditions are shown. The database also lists the polymorphisms within genes and its chromosomal regions. OCDB data is enriched with both validated and predicted miRNA-target and drug-target information. The transcription factors regulations, which are also included, are taken from David and TransmiR. Moreover, a scoring function ranks the relevance of data in the OCDB context. The database is also integrated with the main online resources (PubMed, Entrez-gene, HGNC, dbSNP, DrugBank, miRBase, PubChem, Kegg, Disease-ontology and ChEBI). The web interface has been developed using phpMyAdmin and Bootstrap software. This allows (i) to browse data by category and (ii) to navigate in the database by searching genes, miRNAs, drugs, SNPs, regions, drug targets and articles. The data can be exported in textual format as well as the whole database in.sql or tabular format. OCDB is an essential resource to support genome-wide analysis, genetic and pharmacological studies. It also facilitates the evaluation of genetic data

  14. Ability of online drug databases to assist in clinical decision-making with infectious disease therapies

    Directory of Open Access Journals (Sweden)

    Jebrock Jennifer

    2008-11-01

    Full Text Available Abstract Background Infectious disease (ID is a dynamic field with new guidelines being adopted at a rapid rate. Clinical decision support tools (CDSTs have proven beneficial in selecting treatment options to improve outcomes. However, there is a dearth of information on the abilities of CDSTs, such as drug information databases. This study evaluated online drug information databases when answering infectious disease-specific queries. Methods Eight subscription drug information databases: American Hospital Formulary Service Drug Information (AHFS, Clinical Pharmacology (CP, Epocrates Online Premium (EOP, Facts & Comparisons 4.0 Online (FC, Lexi-Comp (LC, Lexi-Comp with AHFS (LC-AHFS, Micromedex (MM, and PEPID PDC (PPDC and six freely accessible: DailyMed (DM, DIOne (DIO, Epocrates Online Free (EOF, Internet Drug Index (IDI, Johns Hopkins ABX Guide (JHAG, and Medscape Drug Reference (MDR were evaluated for their scope (presence of an answer and completeness (on a 3-point scale in answering 147 infectious disease-specific questions. Questions were divided among five classifications: antibacterial, antiviral, antifungal, antiparasitic, and vaccination/immunization. Classifications were further divided into categories (e.g., dosage, administration, emerging resistance, synergy, and spectrum of activity. Databases were ranked based on scope and completeness scores. ANOVA and Chi-square were used to determine differences between individual databases and between subscription and free databases. Results Scope scores revealed three discrete tiers of database performance: Tier 1 (82-77%, Tier 2 (73-65% and Tier 3 (56-41% which were significantly different from each other (p Conclusion Drug information databases used in ID practice as CDSTs can be valuable resources. MM, MDR, LC-AHFS, AHFS, and CP were shown to be superior in their scope and completeness of information, and MM, AHFS, and MDR provided no erroneous answers. There is room for improvement in

  15. Keterpakaian Database Online: Studi Kasus Layanan E-Journal 2007-2010 di Perpustakaan UGM

    Directory of Open Access Journals (Sweden)

    Maryono Maryono

    2016-09-01

    Full Text Available The usage statistics of online databases need to be studiedfrom various aspects, all ofwhich are usefulfor optimizing the use of the e-journal. This case study examines the eiournal service statistics 2007-2010, as well as its usage growth through the use of booking service of ejournal article at Gadjah Mada University Library. Ebsco is an online database of the most needed, followed by Proquest, JSTOR, Springer and ScienceDirect. Also found that most users ordering ejournal prefer to come straight away, although it's provided messaging and e-mail services.

  16. Keterpakaian Database Online: Studi Kasus Layanan E-journal 2007-2010 di Perpustakaan UGM

    OpenAIRE

    Maryono, Maryono

    2013-01-01

    The usage statistics of online databases need to be studiedfrom various aspects, all ofwhich are usefulfor optimizing the use of the e-journal. This case study examines the eiournal service statistics 2007-2010, as well as its usage growth through the use of booking service of ejournal article at Gadjah Mada University Library. Ebsco is an online database of the most needed, followed by Proquest, JSTOR, Springer and ScienceDirect. Also found that most users ordering ejournal prefer to come st...

  17. The nested assembly of collective attention in online social systems

    CERN Document Server

    Borge-Holthoefer, Javier; Gracia-Lázaro, Carlos; Moreno, Yamir

    2015-01-01

    Online social networks have changed the way in which we communicate. These networks are characterized by a competitive information flow and a dynamic topology, where the success of a given topic or meme depends on many factors, most of which are unknown. Likely, given the many sources of information to which a typical individual is exposed, the economy of attention rules the system dynamics. Here we show, using microblogging data, that competition is minimized through consensus and that collective attention and successful topical assembly are characterized by a nested structure of the bipartite network made up by users and memes. Our results indicate that social phenomena could emerge as a result of a topological transition that minimizes modularity while maximizing the nestedness of the system, and that online social networks are comparable to an ecosystem, where generalists and specialists share resources.

  18. The GUDMAP database – an online resource for genitourinary research

    Science.gov (United States)

    Harding, Simon D.; Armit, Chris; Armstrong, Jane; Brennan, Jane; Cheng, Ying; Haggarty, Bernard; Houghton, Derek; Lloyd-MacGilp, Sue; Pi, Xingjun; Roochun, Yogmatee; Sharghi, Mehran; Tindal, Christopher; McMahon, Andrew P.; Gottesman, Brian; Little, Melissa H.; Georgas, Kylie; Aronow, Bruce J.; Potter, S. Steven; Brunskill, Eric W.; Southard-Smith, E. Michelle; Mendelsohn, Cathy; Baldock, Richard A.; Davies, Jamie A.; Davidson, Duncan

    2011-01-01

    The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is an international consortium working to generate gene expression data and transgenic mice. GUDMAP includes data from large-scale in situ hybridisation screens (wholemount and section) and microarray gene expression data of microdissected, laser-captured and FACS-sorted components of the developing mouse genitourinary (GU) system. These expression data are annotated using a high-resolution anatomy ontology specific to the developing murine GU system. GUDMAP data are freely accessible at www.gudmap.org via easy-to-use interfaces. This curated, high-resolution dataset serves as a powerful resource for biologists, clinicians and bioinformaticians interested in the developing urogenital system. This paper gives examples of how the data have been used to address problems in developmental biology and provides a primer for those wishing to use the database in their own research. PMID:21652655

  19. The GUDMAP database--an online resource for genitourinary research.

    Science.gov (United States)

    Harding, Simon D; Armit, Chris; Armstrong, Jane; Brennan, Jane; Cheng, Ying; Haggarty, Bernard; Houghton, Derek; Lloyd-MacGilp, Sue; Pi, Xingjun; Roochun, Yogmatee; Sharghi, Mehran; Tindal, Christopher; McMahon, Andrew P; Gottesman, Brian; Little, Melissa H; Georgas, Kylie; Aronow, Bruce J; Potter, S Steven; Brunskill, Eric W; Southard-Smith, E Michelle; Mendelsohn, Cathy; Baldock, Richard A; Davies, Jamie A; Davidson, Duncan

    2011-07-01

    The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is an international consortium working to generate gene expression data and transgenic mice. GUDMAP includes data from large-scale in situ hybridisation screens (wholemount and section) and microarray gene expression data of microdissected, laser-captured and FACS-sorted components of the developing mouse genitourinary (GU) system. These expression data are annotated using a high-resolution anatomy ontology specific to the developing murine GU system. GUDMAP data are freely accessible at www.gudmap.org via easy-to-use interfaces. This curated, high-resolution dataset serves as a powerful resource for biologists, clinicians and bioinformaticians interested in the developing urogenital system. This paper gives examples of how the data have been used to address problems in developmental biology and provides a primer for those wishing to use the database in their own research.

  20. XML Storage for Magnetotelluric Transfer Functions: Towards a Comprehensive Online Reference Database

    Science.gov (United States)

    Kelbert, A.; Blum, C.

    2015-12-01

    Magnetotelluric Transfer Functions (MT TFs) represent most of the information about Earth electrical conductivity found in the raw electromagnetic data, providing inputs for further inversion and interpretation. To be useful for scientific interpretation, they must also contain carefully recorded metadata. Making these data available in a discoverable and citable fashion would provide the most benefit to the scientific community, but such a development requires that the metadata is not only present in the file but is also searchable. The most commonly used MT TF format to date, the historical Society of Exploration Geophysicists Electromagnetic Data Interchange Standard 1987 (EDI), no longer supports some of the needs of modern magnetotellurics, most notably accurate error bars recording. Moreover, the inherent heterogeneity of EDI's and other historic MT TF formats has mostly kept the community away from healthy data sharing practices. Recently, the MT team at Oregon State University in collaboration with IRIS Data Management Center developed a new, XML-based format for MT transfer functions, and an online system for long-term storage, discovery and sharing of MT TF data worldwide (IRIS SPUD; www.iris.edu/spud/emtf). The system provides a query page where all of the MT transfer functions collected within the USArray MT experiment and other field campaigns can be searched for and downloaded; an automatic on-the-fly conversion to the historic EDI format is also included. To facilitate conversion to the new, more comprehensive and sustainable, XML format for MT TFs, and to streamline inclusion of historic data into the online database, we developed a set of open source format conversion tools, which can be used for rotation of MT TFs as well as a general XML EDI converter (https://seiscode.iris.washington.edu/projects/emtf-fcu). Here, we report on the newly established collaboration between the USGS Geomagnetism Program and the Oregon State University to gather and

  1. Development and Validation of Search Filters to Identify Articles on Family Medicine in Online Medical Databases

    NARCIS (Netherlands)

    Pols, D.H.; Bramer, W.M.; Bindels, P.J.; Laar, F.A. van de; Bohnen, A.M.

    2015-01-01

    Physicians and researchers in the field of family medicine often need to find relevant articles in online medical databases for a variety of reasons. Because a search filter may help improve the efficiency and quality of such searches, we aimed to develop and validate search filters to identify

  2. Development and validation of search filters to identify articles on family medicine in online medical databases

    NARCIS (Netherlands)

    D.H.J. Pols (David); W.M. Bramer (Wichor); P.J.E. Bindels (Patrick J.E.); F.A. van de Laar (Floris A.); A.M. Bohnen

    2015-01-01

    textabstractPhysicians and researchers in the field of family medicine often need to find relevant articles in online medical databases for a variety of reasons. Because a search filter may help improve the efficiency and quality of such searches, we aimed to develop and validate search filters to

  3. Development and Validation of Search Filters to Identify Articles on Family Medicine in Online Medical Databases

    NARCIS (Netherlands)

    Pols, D.H.; Bramer, W.M.; Bindels, P.J.; Laar, F.A. van de; Bohnen, A.M.

    2015-01-01

    Physicians and researchers in the field of family medicine often need to find relevant articles in online medical databases for a variety of reasons. Because a search filter may help improve the efficiency and quality of such searches, we aimed to develop and validate search filters to identify rese

  4. Development and validation of search filters to identify articles on family medicine in online medical databases

    NARCIS (Netherlands)

    D.H.J. Pols (David); W.M. Bramer (Wichor M); P.J.E. Bindels (Patrick J.E.); F.A. van de Laar (Floris A.); A.M. Bohnen

    2015-01-01

    textabstractPhysicians and researchers in the field of family medicine often need to find relevant articles in online medical databases for a variety of reasons. Because a search filter may help improve the efficiency and quality of such searches, we aimed to develop and validate search filters to i

  5. On Using On-Line Data-Bases for Help in Technical Translating.

    Science.gov (United States)

    Brace, Gerald

    1981-01-01

    Illustrates with two examples the use of online databases for help in translating technical words that cannot be readily found in the literature or in dictionaries. Description of search methods shows how computerized documentation can provide pinpoint access to a vast body of literature. (MES)

  6. Searching Harvard Business Review Online. . . Lessons in Searching a Full Text Database.

    Science.gov (United States)

    Tenopir, Carol

    1985-01-01

    This article examines the Harvard Business Review Online (HBRO) database (bibliographic description fields, abstracts, extracted information, full text, subject descriptors) and reports on 31 sample HBRO searches conducted in Bibliographic Retrieval Services to test differences between searching full text and searching bibliographic record. Sample…

  7. Searching Harvard Business Review Online. . . Lessons in Searching a Full Text Database.

    Science.gov (United States)

    Tenopir, Carol

    1985-01-01

    This article examines the Harvard Business Review Online (HBRO) database (bibliographic description fields, abstracts, extracted information, full text, subject descriptors) and reports on 31 sample HBRO searches conducted in Bibliographic Retrieval Services to test differences between searching full text and searching bibliographic record. Sample…

  8. MAGA, a new database of gas natural emissions: a collaborative web environment for collecting data.

    Science.gov (United States)

    Cardellini, Carlo; Chiodini, Giovanni; Frigeri, Alessandro; Bagnato, Emanuela; Frondini, Francesco; Aiuppa, Alessandro

    2014-05-01

    The data on volcanic and non-volcanic gas emissions available online are, as today, are incomplete and most importantly, fragmentary. Hence, there is need for common frameworks to aggregate available data, in order to characterize and quantify the phenomena at various scales. A new and detailed web database (MAGA: MApping GAs emissions) has been developed, and recently improved, to collect data on carbon degassing form volcanic and non-volcanic environments. MAGA database allows researchers to insert data interactively and dynamically into a spatially referred relational database management system, as well as to extract data. MAGA kicked-off with the database set up and with the ingestion in to the database of the data from: i) a literature survey on publications on volcanic gas fluxes including data on active craters degassing, diffuse soil degassing and fumaroles both from dormant closed-conduit volcanoes (e.g., Vulcano, Phlegrean Fields, Santorini, Nysiros, Teide, etc.) and open-vent volcanoes (e.g., Etna, Stromboli, etc.) in the Mediterranean area and Azores, and ii) the revision and update of Googas database on non-volcanic emission of the Italian territory (Chiodini et al., 2008), in the framework of the Deep Earth Carbon Degassing (DECADE) research initiative of the Deep Carbon Observatory (DCO). For each geo-located gas emission site, the database holds images and description of the site and of the emission type (e.g., diffuse emission, plume, fumarole, etc.), gas chemical-isotopic composition (when available), gas temperature and gases fluxes magnitude. Gas sampling, analysis and flux measurement methods are also reported together with references and contacts to researchers expert of each site. In this phase data can be accessed on the network from a web interface, and data-driven web service, where software clients can request data directly from the database, are planned to be implemented shortly. This way Geographical Information Systems (GIS) and

  9. The folliculin mutation database: an online database of mutations associated with Birt-Hogg-Dubé syndrome.

    Science.gov (United States)

    Wei, Ming-Hui; Blake, Patrick W; Shevchenko, Julia; Toro, Jorge R

    2009-09-01

    The folliculin gene (FLCN), also known as BHD, is the only known susceptibility gene for Birt-Hogg-Dubé syndrome. BHDS is the autosomal dominant predisposition to the development of follicular hamartomas, lung cysts, spontaneous pneumothorax, and/or kidney neoplasms. To date, 53 unique germline mutations have been reported. FLCN mutation detection rate is 88%. FLCN encodes a predicted 579-amino acid protein, designated folliculin that is highly conserved between humans and homologs in mice, Drosophila, and C. elegans. We developed the first online database detailing all FLCN variants identified in our laboratory and reported in the literature. The FLCN database applies, and assists researchers in applying HGVS nomenclature guidelines. To date, the FCLN database includes 84 variants: 53 unique germline mutations and 31 SNPs. The majority of FLCN germline mutations are predicted to produce a truncated folliculin, resulting in loss of function. The FLCN mutations consist of: 45% (24/53) deletions, 32% (17/53) substitutions (10 putative-splice site, 5 nonsense, and 2 missense), 15% (8/53) duplications, 6% (3/53) insertion/deletions and 2% (1/53) insertions. The database strives to systematically unify current knowledge of FLCN variants and will be useful to geneticists and genetic counselors while also providing a rapid and systematic resource for investigators.

  10. Collective emotions online and their influence on community life

    CERN Document Server

    Chmiel, Anna; Thelwall, Mike; Paltoglou, Georgios; Buckley, Kevan; Kappas, Arvid; Hołyst, Janusz A

    2011-01-01

    E-communities, social groups interacting online, have recently become an object of interdisciplinary research. As with face-to-face meetings, Internet exchanges may not only include factual information but also emotional information - how participants feel about the subject discussed or other group members. Emotions are known to be important in affecting interaction partners in offline communication in many ways. Could emotions in Internet exchanges affect others and systematically influence quantitative and qualitative aspects of the trajectory of e-communities? The development of automatic sentiment analysis has made large scale emotion detection and analysis possible using text messages collected from the web. It is not clear if emotions in e-communities primarily derive from individual group members' personalities or if they result from intra-group interactions, and whether they influence group activities. We show the collective character of affective phenomena on a large scale as observed in 4 million po...

  11. An online database for informing ecological network models: http://kelpforest.ucsc.edu

    Science.gov (United States)

    Beas-Luna, Rodrigo; Tinker, M. Tim; Novak, Mark; Carr, Mark H.; Black, August; Caselle, Jennifer E.; Hoban, Michael; Malone, Dan; Iles, Alison C.

    2014-01-01

    Ecological network models and analyses are recognized as valuable tools for understanding the dynamics and resiliency of ecosystems, and for informing ecosystem-based approaches to management. However, few databases exist that can provide the life history, demographic and species interaction information necessary to parameterize ecological network models. Faced with the difficulty of synthesizing the information required to construct models for kelp forest ecosystems along the West Coast of North America, we developed an online database (http://kelpforest.ucsc.edu/) to facilitate the collation and dissemination of such information. Many of the database's attributes are novel yet the structure is applicable and adaptable to other ecosystem modeling efforts. Information for each taxonomic unit includes stage-specific life history, demography, and body-size allometries. Species interactions include trophic, competitive, facilitative, and parasitic forms. Each data entry is temporally and spatially explicit. The online data entry interface allows researchers anywhere to contribute and access information. Quality control is facilitated by attributing each entry to unique contributor identities and source citations. The database has proven useful as an archive of species and ecosystem-specific information in the development of several ecological network models, for informing management actions, and for education purposes (e.g., undergraduate and graduate training). To facilitate adaptation of the database by other researches for other ecosystems, the code and technical details on how to customize this database and apply it to other ecosystems are freely available and located at the following link (https://github.com/kelpforest-cameo/data​baseui).

  12. New free Danish online (Q)SAR predictions database with >600,000 substances

    DEFF Research Database (Denmark)

    Wedebye, Eva Bay; Dybdahl, Marianne; Reffstrup, Trine Klein

    by regulators and industry. A lot of progress in (Q)SAR model development, application and documentation has been made since the publication in 2005. A new and completely rebuild online (Q)SAR predictions database was therefore published in November 2015 at http://qsar.food.dtu.dk. The number of chemicals...... in the database has been expanded from 185,000 to >600,000. As far as possible all organic single constituent substances that were pre-registered under REACH have been included in the new structure set. The new Danish (Q)SAR Database includes estimates from more than 200 (Q)SARs covering a wide range of hazardous......-scale screenings. The online interface to the database allows for advanced combination of searches as well as sorting functions on chemical similarity. Negotiations are underway with the OECD to integrate the new database with the OECD (Q)SAR Application Toolbox. The database was developed by the DTU National Food...

  13. An online database for informing ecological network models: http://kelpforest.ucsc.edu.

    Science.gov (United States)

    Beas-Luna, Rodrigo; Novak, Mark; Carr, Mark H; Tinker, Martin T; Black, August; Caselle, Jennifer E; Hoban, Michael; Malone, Dan; Iles, Alison

    2014-01-01

    Ecological network models and analyses are recognized as valuable tools for understanding the dynamics and resiliency of ecosystems, and for informing ecosystem-based approaches to management. However, few databases exist that can provide the life history, demographic and species interaction information necessary to parameterize ecological network models. Faced with the difficulty of synthesizing the information required to construct models for kelp forest ecosystems along the West Coast of North America, we developed an online database (http://kelpforest.ucsc.edu/) to facilitate the collation and dissemination of such information. Many of the database's attributes are novel yet the structure is applicable and adaptable to other ecosystem modeling efforts. Information for each taxonomic unit includes stage-specific life history, demography, and body-size allometries. Species interactions include trophic, competitive, facilitative, and parasitic forms. Each data entry is temporally and spatially explicit. The online data entry interface allows researchers anywhere to contribute and access information. Quality control is facilitated by attributing each entry to unique contributor identities and source citations. The database has proven useful as an archive of species and ecosystem-specific information in the development of several ecological network models, for informing management actions, and for education purposes (e.g., undergraduate and graduate training). To facilitate adaptation of the database by other researches for other ecosystems, the code and technical details on how to customize this database and apply it to other ecosystems are freely available and located at the following link (https://github.com/kelpforest-cameo/databaseui).

  14. Brain Tumor Database, a free relational database for collection and analysis of brain tumor patient information.

    Science.gov (United States)

    Bergamino, Maurizio; Hamilton, David J; Castelletti, Lara; Barletta, Laura; Castellan, Lucio

    2015-03-01

    In this study, we describe the development and utilization of a relational database designed to manage the clinical and radiological data of patients with brain tumors. The Brain Tumor Database was implemented using MySQL v.5.0, while the graphical user interface was created using PHP and HTML, thus making it easily accessible through a web browser. This web-based approach allows for multiple institutions to potentially access the database. The BT Database can record brain tumor patient information (e.g. clinical features, anatomical attributes, and radiological characteristics) and be used for clinical and research purposes. Analytic tools to automatically generate statistics and different plots are provided. The BT Database is a free and powerful user-friendly tool with a wide range of possible clinical and research applications in neurology and neurosurgery. The BT Database graphical user interface source code and manual are freely available at http://tumorsdatabase.altervista.org.

  15. 75 FR 74738 - Proposed Collection; Comment Request; Online Skills Training for PCPs on Substance Abuse

    Science.gov (United States)

    2010-12-01

    ... HUMAN SERVICES National Institutes of Health Proposed Collection; Comment Request; Online Skills... currently valid OMB control number. Proposed Collection: Title: Online Skills Training for PCPs on Substance... research will evaluate the effectiveness of the Online Skills Training for PCPs on Substance Abuse, via...

  16. Performance of online drug information databases as clinical decision support tools in infectious disease medication management.

    Science.gov (United States)

    Polen, Hyla H; Zapantis, Antonia; Clauson, Kevin A; Clauson, Kevin Alan; Jebrock, Jennifer; Paris, Mark

    2008-11-06

    Infectious disease (ID) medication management is complex and clinical decision support tools (CDSTs) can provide valuable assistance. This study evaluated scope and completeness of ID drug information found in online databases by evaluating their ability to answer 147 question/answer pairs. Scope scores produced highest rankings (%) for: Micromedex (82.3), Lexi-Comp/American Hospital Formulary Service (81.0), and Medscape Drug Reference (81.0); lowest includes: Epocrates Online Premium (47.0), Johns Hopkins ABX Guide (45.6), and PEPID PDC (40.8).

  17. Sustainable Transport Data Collection and Application: China Urban Transport Database

    OpenAIRE

    Tian Jiang; Zhongyi Wu; Yu Song; Xianglong Liu; Haode Liu; Haozhi Zhang

    2013-01-01

    Transport policy making process of national and local governments should be supported by a comprehensive database to ensure a sustainable and healthy development of urban transport. China Urban Transport Database (CUTD) has been built to play such a role. This paper is to make an introduction of CUTD framework including user management, data warehouse, and application modules. Considering the urban transport development features of Chinese cities, sustainable urban transport development indic...

  18. INVESTIGATING THE COLLECTIVE ONLINE purchase PHENOMENON: FACTORS AFFECTING THE SHOPPING INTENSITY

    OpenAIRE

    Everton Roberto Comin; Rafael Teixeira; Juliana Durayski; Natália Gomes da Silva; Julio Vieira

    2014-01-01

    The collective online shopping is a recent phenomenon in Brazil whose objective is to sell products and services for a minimum number of consumers. This study aims to investigate whether the intensity of collective online shopping is influenced by the aspects consumer interest in online collective shopping, impulse buying and insecurity. The data collection was based on a questionnaire with closed questions with multiple choices and a 5-point Likert scale.The final sample is compo...

  19. Pembangunan Model Database Akreditasi Online bagi Peningkatan Kerja Assesor untuk Sekolah Menengah Kejuruan

    Directory of Open Access Journals (Sweden)

    Inayatulloh Inayatulloh

    2013-12-01

    Full Text Available The research aims to facilitate the implementation of the assessment of vocational school accreditation and to improve efficiency in accreditation assessment by developing a model of online information system and its database design. The assessment of vocational school accreditation covers eight aspects: content standards, process standards, competency standards, standards of educators and educational technicians, facility and infrastructure standards, management standards, financial standards and assessment standards. All activities aim to socialize the web-based information system model. It is a descriptive research method which creates a systematic and accurate description by seeking factual information on relevant agencies to detail and identifying issues or obtaining state of justification and assessments used in carrying out their duties. The result achieved is a model of information system database online accreditation for vocational high school to support the work of assessor.

  20. Good control practices underlined by an on-line fuzzy control database

    Directory of Open Access Journals (Sweden)

    Alonso, M. V.

    1994-04-01

    Full Text Available In the olive oil trade, control systems that automate extraction processes, cutting production costs and increasing processing capacity without losing quality, are always desirable. The database structure of an on-line fuzzy control of centrifugation systems and the algorithms used to attain the best control conditions are analysed. Good control practices are suggested to obtain virgin olive oil of prime quality.

    In the olive oil trade, control systems that automate extraction processes, cutting production costs and increasing processing capacity without losing quality, are always desirable. The database structure of an on-line fuzzy control of centrifugation systems and the algorithms used to attain the best control conditions are analysed. Good control practices are suggested to obtain virgin olive oil of prime quality.

  1. Movie collection - TogoTV | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ata entries 1169 entries - About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Movie collection - TogoTV | LSDB Archive ...

  2. 77 FR 39269 - Submission for OMB Review, Comment Request, Proposed Collection: IMLS Museum Web Database...

    Science.gov (United States)

    2012-07-02

    ... purpose of the information collection is to develop a national database of museums for use by museums... Web Database: MuseumsCount.gov AGENCY: Institute of Museum and Library Services, National Foundation... establish a comprehensive, reliable database about the size, distribution and scope of the museum sector...

  3. Emulating the Level-1 Electromagnetic Trigger Response Using an Offline Database. Procedure for Populating This Database from the Online Information.

    CERN Document Server

    Becheva, Emilia

    2010-01-01

    The Level-1 Trigger plays a major role in the CMS experiment allowing to reduce the raw event rate at the Large Hadron Collider. Its decision is based on information from the electromagnetic and hadronic calorimeters as well as the muon detectors. The electronics of the electromagnetic calorimeter generate and deliver basic quantities called "Trigger Primitives" which correspond to local energy deposits created by electromagnetic showers. In order to ensure the correct generation of the trigger primitives by the electronics, a special software (emulator) has been implemented. It is able to reproduce the ECAL trigger functionalities at the bit level using the same inputs and identical output format. It is configured in exactly the same way as the hardware. The configuration of the electromagnetic hardware trigger requires 5 million parameters stored into an Online Master Data Storage database (OMDS). This poster will present the procedure used to transfer the parameters from the OMDS to the Offline datab...

  4. Auditing an Online Self-reported Interventional Radiology Adverse Event Database for Compliance and Accuracy.

    Science.gov (United States)

    Burch, Ezra A; Shyn, Paul B; Chick, Jeffrey F; Chauhan, Nikunj R

    2017-04-01

    The purpose of this study was to determine whether auditing an online self-reported interventional radiology quality assurance database improves compliance with record entry or improves the accuracy of adverse event (AE) reporting and grading. Physicians were trained in using the database before the study began. An audit of all database entries for the first 3 months, or the first quarter, was performed, at which point physicians were informed of the audit process; entries for the subsequent 3 months, or the second quarter, were again audited. Results between quarters were compared. Compliance with record entry improved from the first to second quarter, but reminders were necessary to ensure 100% compliance with record entry. Knowledge of the audit process did not significantly improve self-reporting of AE or accuracy of AE grading. However, auditing significantly changed the final AE reporting rates and grades. Copyright © 2016 American College of Radiology. Published by Elsevier Inc. All rights reserved.

  5. Post-Caesarean Section Surgical Site Infection Surveillance Using an Online Database and Mobile Phone Technology.

    Science.gov (United States)

    Castillo, Eliana; McIsaac, Corrine; MacDougall, Bhreagh; Wilson, Douglas; Kohr, Rosemary

    2017-08-01

    Obstetric surgical site infections (SSIs) are common and expensive to the health care system but remain under reported given shorter postoperative hospital stays and suboptimal post-discharge surveillance systems. SSIs, for the purpose of this paper, are defined according to the Center for Disease Control and Prevention (1999) as infection incurring within 30 days of the operative procedure (in this case, Caesarean section [CS]). Demonstrate the feasibility of real-life use of a patient driven SSIs post-discharge surveillance system consisting of an online database and mobile phone technology (surgical mobile app - how2trak) among women undergoing CS in a Canadian urban centre. Estimate the rate of SSIs and associated predisposing factors. Prospective cohort of consecutive women delivering by CS at one urban Canadian hospital. Using surgical mobile app-how2trak-predetermined demographics, comorbidities, procedure characteristics, and self-reported symptoms and signs of infection were collected and linked to patients' incision self-portraits (photos) on postpartum days 3, 7, 10, and 30. A total of 105 patients were enrolled over a 5-month period. Mean age was 31 years, 13% were diabetic, and most were at low risk of surgical complications. Forty-six percent of surgeries were emergency CSs, and 104/105 received antibiotic prophylaxis. Forty-five percent of patients (47/105) submitted at least one photo, and among those, one surgical site infection was detected by photo appearance and self-reported symptoms by postpartum day 10. The majority of patients whom uploaded photos did so multiple times and 43% of them submitted photos up to day 30. Patients with either a diagnosis of diabetes or self-reported Asian ethnicity were less likely to submit photos. Post-discharge surveillance for CS-related SSIs using surgical mobile app how2trak is feasible and deserves further study in the post-discharge setting. Copyright © 2017. Published by Elsevier Inc.

  6. An online database for informing ecological network models: http://kelpforest.ucsc.edu.

    Directory of Open Access Journals (Sweden)

    Rodrigo Beas-Luna

    Full Text Available Ecological network models and analyses are recognized as valuable tools for understanding the dynamics and resiliency of ecosystems, and for informing ecosystem-based approaches to management. However, few databases exist that can provide the life history, demographic and species interaction information necessary to parameterize ecological network models. Faced with the difficulty of synthesizing the information required to construct models for kelp forest ecosystems along the West Coast of North America, we developed an online database (http://kelpforest.ucsc.edu/ to facilitate the collation and dissemination of such information. Many of the database's attributes are novel yet the structure is applicable and adaptable to other ecosystem modeling efforts. Information for each taxonomic unit includes stage-specific life history, demography, and body-size allometries. Species interactions include trophic, competitive, facilitative, and parasitic forms. Each data entry is temporally and spatially explicit. The online data entry interface allows researchers anywhere to contribute and access information. Quality control is facilitated by attributing each entry to unique contributor identities and source citations. The database has proven useful as an archive of species and ecosystem-specific information in the development of several ecological network models, for informing management actions, and for education purposes (e.g., undergraduate and graduate training. To facilitate adaptation of the database by other researches for other ecosystems, the code and technical details on how to customize this database and apply it to other ecosystems are freely available and located at the following link (https://github.com/kelpforest-cameo/databaseui.

  7. An online spatial database of Australian Indigenous Biocultural Knowledge for contemporary natural and cultural resource management.

    Science.gov (United States)

    Pert, Petina L; Ens, Emilie J; Locke, John; Clarke, Philip A; Packer, Joanne M; Turpin, Gerry

    2015-11-15

    With growing international calls for the enhanced involvement of Indigenous peoples and their biocultural knowledge in managing conservation and the sustainable use of physical environment, it is timely to review the available literature and develop cross-cultural approaches to the management of biocultural resources. Online spatial databases are becoming common tools for educating land managers about Indigenous Biocultural Knowledge (IBK), specifically to raise a broad awareness of issues, identify knowledge gaps and opportunities, and to promote collaboration. Here we describe a novel approach to the application of internet and spatial analysis tools that provide an overview of publically available documented Australian IBK (AIBK) and outline the processes used to develop the online resource. By funding an AIBK working group, the Australian Centre for Ecological Analysis and Synthesis (ACEAS) provided a unique opportunity to bring together cross-cultural, cross-disciplinary and trans-organizational contributors who developed these resources. Without such an intentionally collaborative process, this unique tool would not have been developed. The tool developed through this process is derived from a spatial and temporal literature review, case studies and a compilation of methods, as well as other relevant AIBK papers. The online resource illustrates the depth and breadth of documented IBK and identifies opportunities for further work, partnerships and investment for the benefit of not only Indigenous Australians, but all Australians. The database currently includes links to over 1500 publically available IBK documents, of which 568 are geo-referenced and were mapped. It is anticipated that as awareness of the online resource grows, more documents will be provided through the website to build the database. It is envisaged that this will become a well-used tool, integral to future natural and cultural resource management and maintenance.

  8. Collective emotions online and their influence on community life.

    Directory of Open Access Journals (Sweden)

    Anna Chmiel

    Full Text Available BACKGROUND: E-communities, social groups interacting online, have recently become an object of interdisciplinary research. As with face-to-face meetings, Internet exchanges may not only include factual information but also emotional information--how participants feel about the subject discussed or other group members. Emotions in turn are known to be important in affecting interaction partners in offline communication in many ways. Could emotions in Internet exchanges affect others and systematically influence quantitative and qualitative aspects of the trajectory of e-communities? The development of automatic sentiment analysis has made large scale emotion detection and analysis possible using text messages collected from the web. However, it is not clear if emotions in e-communities primarily derive from individual group members' personalities or if they result from intra-group interactions, and whether they influence group activities. METHODOLOGY/PRINCIPAL FINDINGS: Here, for the first time, we show the collective character of affective phenomena on a large scale as observed in four million posts downloaded from Blogs, Digg and BBC forums. To test whether the emotions of a community member may influence the emotions of others, posts were grouped into clusters of messages with similar emotional valences. The frequency of long clusters was much higher than it would be if emotions occurred at random. Distributions for cluster lengths can be explained by preferential processes because conditional probabilities for consecutive messages grow as a power law with cluster length. For BBC forum threads, average discussion lengths were higher for larger values of absolute average emotional valence in the first ten comments and the average amount of emotion in messages fell during discussions. CONCLUSIONS/SIGNIFICANCE: Overall, our results prove that collective emotional states can be created and modulated via Internet communication and that emotional

  9. Hazardous Waste Clean-Up Information (CLU-IN) On-line Characterization and Remediation Databases Fact Sheet

    Science.gov (United States)

    This fact sheet provides an overview of the 10 on-line characterization and remediation databases available on the Hazardous Waste Clean-Up Information (CLU-IN) website sponsored by the U.S. Environmental Protection Agency.

  10. 76 FR 27384 - Agency Information Collection Activity (Veteran Suicide Prevention Online Quantitative Surveys...

    Science.gov (United States)

    2011-05-11

    ... better understand Veterans and their families' awareness of VA's suicide prevention and mental health... AFFAIRS Agency Information Collection Activity (Veteran Suicide Prevention Online Quantitative Surveys.... Veterans Online Survey, VA Form 10-0513. b. Veterans Family Online Survey, VA Form 10-0513a. c....

  11. Horse Racing at the Library: How One Library System Increased the Usage of Some of Its Online Databases

    Science.gov (United States)

    Kurhan, Scott H.; Griffing, Elizabeth A.

    2011-01-01

    Reference services in public libraries are changing dramatically. The Internet, online databases, and shrinking budgets are all making it necessary for non-traditional reference staff to become familiar with online reference tools. Recognizing the need for cross-training, Chesapeake Public Library (CPL) developed a program called the Database…

  12. Horse Racing at the Library: How One Library System Increased the Usage of Some of Its Online Databases

    Science.gov (United States)

    Kurhan, Scott H.; Griffing, Elizabeth A.

    2011-01-01

    Reference services in public libraries are changing dramatically. The Internet, online databases, and shrinking budgets are all making it necessary for non-traditional reference staff to become familiar with online reference tools. Recognizing the need for cross-training, Chesapeake Public Library (CPL) developed a program called the Database…

  13. HITRANonline: An online interface and the flexible representation of spectroscopic data in the HITRAN database

    Science.gov (United States)

    Hill, Christian; Gordon, Iouli E.; Kochanov, Roman V.; Barrett, Lorenzo; Wilzewski, Jonas S.; Rothman, Laurence S.

    2016-07-01

    We describe a new, online interface to the HITRAN database that overcomes the many limitations of the existing, 160-character fixed-width, text based format (the ".par" files mostly distributed through an FTP site until now). The interface, called HITRANonline, accesses a relational database [JQSRT 2013:130, 57-61] in which the spectroscopic data are stored in a flexible, extensible and structured format. This allows an arbitrary number of different parameters for each transition to be stored so that HITRAN can represent, for example, non-Voigt line shape profiles as well as parameters representing broadening by species other than "air" and "self". The online interface provides many ways of visualizing data as part of querying the database and allows users to create and save their own output formats to suit their own needs. A bibliography file produced with each data file provides citations and notes to the original data sources to make it easier for users to credit data providers. Once registered with the HITRANonline service, users also have (private) access to thier own search history which summarizes and can repeat queries.

  14. A charismatic new species of green lacewing discovered in Malaysia (Neuroptera, Chrysopidae: the confluence of citizen scientist, online image database and cybertaxonomy

    Directory of Open Access Journals (Sweden)

    Shaun Winterton

    2012-08-01

    Full Text Available An unusual new species of green lacewing (Neuroptera: Chrysopidae: Semachrysa jade sp. n. is described from Selangor (Malaysia as a joint discovery by citizen scientist and professional taxonomists. The incidental nature of this discovery is underscored by the fact that the species was initially photographed and then released, with images subsequently posted to an online image database. It was not until the images in the database were randomly examined by the professional taxonomists that it was determined that the species was in fact new. A subsequent specimen was collected at the same locality and is described herein along with another specimen identified from nearby Sabah.

  15. A charismatic new species of green lacewing discovered in Malaysia (Neuroptera, Chrysopidae): the confluence of citizen scientist, online image database and cybertaxonomy.

    Science.gov (United States)

    Winterton, Shaun L; Guek, Hock Ping; Brooks, Stephen J

    2012-01-01

    An unusual new species of green lacewing (Neuroptera: Chrysopidae: Semachrysa jadesp. n.) is described from Selangor (Malaysia) as a joint discovery by citizen scientist and professional taxonomists. The incidental nature of this discovery is underscored by the fact that the species was initially photographed and then released, with images subsequently posted to an online image database. It was not until the images in the database were randomly examined by the professional taxonomists that it was determined that the species was in fact new. A subsequent specimen was collected at the same locality and is described herein along with another specimen identified from nearby Sabah.

  16. The Use of Online Methodologies in Data Collection for Gambling and Gaming Addictions

    Science.gov (United States)

    Griffiths, Mark D.

    2010-01-01

    The paper outlines the advantages, disadvantages, and other implications of using the Internet to collect data from gaming addicts. Drawing from experience of numerous addiction studies carried out online by the author, and by reviewing the methodological literature examining online data collection among both gambling addicts and video game…

  17. 75 FR 44265 - Proposed Collection; Comment Request; Online Skills Training for PCPs on Substance Abuse

    Science.gov (United States)

    2010-07-28

    ... Training for PCPs on Substance Abuse SUMMARY: Under the provisions of Section 3506(c)(2)A of the Paperwork... Collection: Title: Online Skills Training for PCPs on Substance Abuse. Type of Information Collection Request... Online Skills Training for PCPs on Substance Abuse, via the Web site SBIRTTraining.com , to...

  18. LBVS: an online platform for ligand-based virtual screening using publicly accessible databases.

    Science.gov (United States)

    Zheng, Minghao; Liu, Zhihong; Yan, Xin; Ding, Qianzhi; Gu, Qiong; Xu, Jun

    2014-11-01

    Abundant data on compound bioactivity and publicly accessible chemical databases increase opportunities for ligand-based drug discovery. In order to make full use of the data, an online platform for ligand-based virtual screening (LBVS) using publicly accessible databases has been developed. LBVS adopts Bayesian learning approach to create virtual screening models because of its noise tolerance, speed, and efficiency in extracting knowledge from data. LBVS currently includes data derived from BindingDB and ChEMBL. Three validation approaches have been employed to evaluate the virtual screening models created from LBVS. The tenfold cross validation results of twenty different LBVS models demonstrate that LBVS achieves an average AUC value of 0.86. Our internal and external testing results indicate that LBVS is predictive for lead identifications. LBVS can be publicly accessed at http://rcdd.sysu.edu.cn/lbvs.

  19. Clustering, concurrency control, crash recovery, garbage collection, and security in object-oriented database management systems

    OpenAIRE

    1991-01-01

    This paper presents considerations about several topics that have a direct influence on data reliability and performance in object oriented database management systems. These topics are: physical storage management (clustering), concurrency control, crash recovery, garbage collection, and database security. Each topic is illustrated by its application to the Tactical Database as designed for the Low Cost Combat Direction System Naval Postgraduate School, Department of Computer Science, Cod...

  20. EuDBase: An online resource for automated EST analysis pipeline (ESTFrontier) and database for red seaweed Eucheuma denticulatum.

    Science.gov (United States)

    Hussein, Zeti Azura Mohamed; Loke, Kok Keong; Abidin, Rabiatul Adawiah Zainal; Othman, Roohaida

    2011-01-01

    Functional genomics has proven to be an efficient tool in identifying genes involved in various biological functions. However the availability of commercially important seaweed Eucheuma denticulatum functional resources is still limited. EuDBase is the first seaweed online repository that provides integrated access to ESTs of Eucheuma denticulatum generated from samples collected from Kudat and Semporna in Sabah, Malaysia. The database stored 10,031 ESTs that are clustered and assembled into 2,275 unique transcripts (UT) and 955 singletons. Raw data were automatically processed using ESTFrontier, an in-house automated EST analysis pipeline. Data was collected in MySQL database. Web interface is implemented using PHP and it allows browsing and querying EuDBase through search engine. Data is searchable via BLAST hit, domain search, Gene Ontology or KEGG Pathway. A user-friendly interface allows the identification of sequences either using a simple text query or similarity search. The development of EuDBase is initiated to store, manage and analyze the E. denticulatum ESTs and to provide accumulative digital resources for the use of global scientific community. EuDBase is freely available from http://www.inbiosis.ukm.my/eudbase/.

  1. The Magnetics Information Consortium (MagIC) Online Database: Uploading, Searching and Visualizing Paleomagnetic and Rock Magnetic Data

    Science.gov (United States)

    Minnett, R.; Koppers, A.; Tauxe, L.; Constable, C.; Pisarevsky, S. A.; Jackson, M.; Solheid, P.; Banerjee, S.; Johnson, C.

    2006-12-01

    remain available for download by the public (in both text and Excel format). Finally, the contents of these template files are automatically parsed into the online relational database, making the data available for online searches in the paleomagnetic and rock magnetic search nodes. The MagIC database contains all data transferred from the IAGA paleomagnetic poles database (GPMDB), the lava flow paleosecular variation database (PSVRL), lake sediment database (SECVR) and the PINT database. Additionally, a substantial number of data compiled under the Time Averaged Field Investigations project is now included plus a significant fraction of the data collected at SIO and the IRM. Ongoing additions of legacy data include over 40 papers from studies on the Hawaiian Islands and Mexico, data compilations from archeomagnetic studies and updates to the lake sediment dataset.

  2. SciELO, Scientific Electronic Library Online, a Database of Open Access Journals

    Science.gov (United States)

    Meneghini, Rogerio

    2013-01-01

    This essay discusses SciELO, a scientific journal database operating in 14 countries. It covers over 1000 journals providing open access to full text and table sets of scientometrics data. In Brazil it is responsible for a collection of nearly 300 journals, selected along 15 years as the best Brazilian periodicals in natural and social sciences.…

  3. Using relational databases to collect and store discrete-event simulation results

    DEFF Research Database (Denmark)

    Poderys, Justas; Soler, José

    2016-01-01

    , export the results to a data carrier file and then process the results stored in a file using the data processing software. In this work, we propose to save the simulation results directly from a simulation tool to a computer database. We implemented a link between the discrete-even simulation tool...... and the database and performed performance evaluation of 3 different open-source database systems. We show, that with a right choice of a database system, simulation results can be collected and exported up to 2.67 times faster, and use 1.78 times less disk space when compared to using simulation software built...

  4. Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases.

    Science.gov (United States)

    Sanderson, Lacey-Anne; Ficklin, Stephen P; Cheng, Chun-Huai; Jung, Sook; Feltus, Frank A; Bett, Kirstin E; Main, Dorrie

    2013-01-01

    Tripal is an open-source freely available toolkit for construction of online genomic and genetic databases. It aims to facilitate development of community-driven biological websites by integrating the GMOD Chado database schema with Drupal, a popular website creation and content management software. Tripal provides a suite of tools for interaction with a Chado database and display of content therein. The tools are designed to be generic to support the various ways in which data may be stored in Chado. Previous releases of Tripal have supported organisms, genomic libraries, biological stocks, stock collections and genomic features, their alignments and annotations. Also, Tripal and its extension modules provided loaders for commonly used file formats such as FASTA, GFF, OBO, GAF, BLAST XML, KEGG heir files and InterProScan XML. Default generic templates were provided for common views of biological data, which could be customized using an open Application Programming Interface to change the way data are displayed. Here, we report additional tools and functionality that are part of release v1.1 of Tripal. These include (i) a new bulk loader that allows a site curator to import data stored in a custom tab delimited format; (ii) full support of every Chado table for Drupal Views (a powerful tool allowing site developers to construct novel displays and search pages); (iii) new modules including 'Feature Map', 'Genetic', 'Publication', 'Project', 'Contact' and the 'Natural Diversity' modules. Tutorials, mailing lists, download and set-up instructions, extension modules and other documentation can be found at the Tripal website located at http://tripal.info. DATABASE URL: http://tripal.info/.

  5. INVESTIGATING THE COLLECTIVE ONLINE purchase PHENOMENON: FACTORS AFFECTING THE SHOPPING INTENSITY

    Directory of Open Access Journals (Sweden)

    Everton Roberto Comin

    2014-04-01

    Full Text Available The collective online shopping is a recent phenomenon in Brazil whose objective is to sell products and services for a minimum number of consumers. This study aims to investigate whether the intensity of collective online shopping is influenced by the aspects consumer interest in online collective shopping, impulse buying and insecurity. The data collection was based on a questionnaire with closed questions with multiple choices and a 5-point Likert scale.The final sample is composed of 143 respondents. Data was analyzed through the following statistic techniques: exploratory data analysis, exploratory factor analysis, reliability analysis, and logistic regression. The results suggest that people more interest in collective shopping are more likely to make collective shopping. People who feel greater insecurity in navigating the website is less likely to make collective shopping. It was observed that there is no a positive relationship between impulse shopping and collective purchasing. Some limitations include the number of constructs and sample characteristics.

  6. The Littorina sequence database (LSD)--an online resource for genomic data.

    Science.gov (United States)

    Canbäck, Björn; André, Carl; Galindo, Juan; Johannesson, Kerstin; Johansson, Tomas; Panova, Marina; Tunlid, Anders; Butlin, Roger

    2012-01-01

    We present an interactive, searchable expressed sequence tag database for the periwinkle snail Littorina saxatilis, an upcoming model species in evolutionary biology. The database is the result of a hybrid assembly between Sanger and 454 sequences, 1290 and 147,491 sequences respectively. Normalized and non-normalized cDNA was obtained from different ecotypes of L. saxatilis collected in the UK and Sweden. The Littorina sequence database (LSD) contains 26,537 different contigs, of which 2453 showed similarity with annotated proteins in UniProt. Querying the LSD permits the selection of the taxonomic origin of blast hits for each contig, and the search can be restricted to particular taxonomic groups. The database allows access to UniProt annotations, blast output, protein family domains (PFAM) and Gene Ontology. The database will allow users to search for genetic markers and identifying candidate genes or genes for expression analyses. It is open for additional deposition of sequence information for L. saxatilis and other species of the genus Littorina. The LSD is available at http://mbio-serv2.mbioekol.lu.se/Littorina/.

  7. Collective Information Literacy in Massively Multiplayer Online Games

    Science.gov (United States)

    Martin, Crystle; Steinkuehler, Constance

    2010-01-01

    This article explores the forms of information literacy that arise in commercial entertainment games like "World of Warcraft." Using examples culled from eight months of online ethnographic data, the authors detail the forms of information literacy that arise as a regular part of in-game social interaction, emphasizing (ironically) the…

  8. The ability of older adults to use customized online medical databases to improve their health-related knowledge.

    Science.gov (United States)

    Freund, Ophir; Reychav, Iris; McHaney, Roger; Goland, Ella; Azuri, Joseph

    2017-06-01

    Patient compliance with medical advice and recommended treatment depends on perception of health condition, medical knowledge, attitude, and self-efficacy. This study investigated how use of customized online medical databases, intended to improve knowledge in a variety of relevant medical topics, influenced senior adults' perceptions. Seventy-nine older adults in residence homes completed a computerized, tablet-based questionnaire, with medical scenarios and related questions. Following an intervention, control group participants answered questions without online help while an experimental group received internet links that directed them to customized, online medical databases. Medical knowledge and test scores among the experimental group significantly improved from pre- to post-intervention (pdatabases. The study demonstrated how such databases help solve health-related questions among older adult population members, and that older patients appear willing to consider technology usage in information acquisition. Copyright © 2017 Elsevier B.V. All rights reserved.

  9. The First Letter in Individual: An Alternative to Collective Online Discussion

    Science.gov (United States)

    Flores, Juan F.

    2006-01-01

    The online IPJ (Interactive Portfolio Journal), open to the individual student and the teacher but not to the whole class, allows online discussion to draw from both public and private voices, and productively uses the traditional focus on collective critical exchange in tandem with private reflection. (Contains 2 figures and 1 note.)

  10. Development and Validation of Search Filters to Identify Articles on Family Medicine in Online Medical Databases.

    Science.gov (United States)

    Pols, David H J; Bramer, Wichor M; Bindels, Patrick J E; van de Laar, Floris A; Bohnen, Arthur M

    2015-01-01

    Physicians and researchers in the field of family medicine often need to find relevant articles in online medical databases for a variety of reasons. Because a search filter may help improve the efficiency and quality of such searches, we aimed to develop and validate search filters to identify research studies of relevance to family medicine. Using a new and objective method for search filter development, we developed and validated 2 search filters for family medicine. The sensitive filter had a sensitivity of 96.8% and a specificity of 74.9%. The specific filter had a specificity of 97.4% and a sensitivity of 90.3%. Our new filters should aid literature searches in the family medicine field. The sensitive filter may help researchers conducting systematic reviews, whereas the specific filter may help family physicians find answers to clinical questions at the point of care when time is limited.

  11. Considerations and benefits of implementing an online database tool for business continuity.

    Science.gov (United States)

    Mackinnon, Susanne; Pinette, Jennifer

    2016-01-01

    In today's challenging climate of ongoing fiscal restraints, limited resources and complex organisational structures there is an acute need to investigate opportunities to facilitate enhanced delivery of business continuity programmes while maintaining or increasing acceptable levels of service delivery. In 2013, Health Emergency Management British Columbia (HEMBC), responsible for emergency management and business continuity activities across British Columbia's health sector, transitioned its business continuity programme from a manual to automated process with the development of a customised online database, known as the Health Emergency Management Assessment Tool (HEMAT). Key benefits to date include a more efficient business continuity input process, immediate situational awareness for use in emergency response and/or advanced planning and streamlined analyses for generation of reports.

  12. 78 FR 60303 - Agency Information Collection Activities: Online Survey of Web Services Employers; New...

    Science.gov (United States)

    2013-10-01

    ... of Web Services Employers; New Information Collection ACTION: 30-Day Notice. SUMMARY: The Department... collection. (2) Title of the Form/Collection: Online Survey of Web Services Employers. (3) Agency form number... USCIS obtains data on the E-Verify Program Web Services. Gaining an understanding of the Web...

  13. People's Collection Wales: Online Access to the Heritage of Wales from Museums, Archives and Libraries

    Science.gov (United States)

    Tedd, Lucy A.

    2011-01-01

    Purpose: The People's Collection Wales aims to collect, interpret, distribute and discuss Wales' cultural heritage in an online environment. Individual users or local history societies are able to create their own digital collections, contribute relevant content, as well as access digital resources from heritage institutions. This paper aims to…

  14. Databases

    Data.gov (United States)

    National Aeronautics and Space Administration — The databases of computational and experimental data from the first Aeroelastic Prediction Workshop are located here. The databases file names tell their contents by...

  15. Collective Value Creation and Empowerment in an Online Brand Community: A Netnographic Study on LEGO Builders

    Directory of Open Access Journals (Sweden)

    Pekka Tuominen

    2012-06-01

    Full Text Available Online communities are becoming “places” of belonging, information, and emotional support that people cannot do without. These social groups have a real existence for their participants, and thus have consequential effects on many aspects of behaviour. This article examines collective value creation and empowerment in an online brand community. It presents the main features of an online brand community, the process of value co-creation, and motivators for participating in online brand communities. These key factors jointly characterize collective value creation and empowerment. This netnographic study focuses on an online brand community called BrickBuilders, which is a meeting place for LEGO builders in Finland. BrickBuilders’ members feel a sense of belonging, they share similar motivations, and they create value together.

  16. The development of a new database of gas emissions: MAGA, a collaborative web environment for collecting data

    Science.gov (United States)

    Cardellini, C.; Chiodini, G.; Frigeri, A.; Bagnato, E.; Aiuppa, A.; McCormick, B.

    2013-12-01

    The data on volcanic and non-volcanic gas emissions available online are, as today, incomplete and most importantly, fragmentary. Hence, there is need for common frameworks to aggregate available data, in order to characterize and quantify the phenomena at various spatial and temporal scales. Building on the Googas experience we are now extending its capability, particularly on the user side, by developing a new web environment for collecting and publishing data. We have started to create a new and detailed web database (MAGA: MApping GAs emissions) for the deep carbon degassing in the Mediterranean area. This project is part of the Deep Earth Carbon Degassing (DECADE) research initiative, lunched in 2012 by the Deep Carbon Observatory (DCO) to improve the global budget of endogenous carbon from volcanoes. MAGA database is planned to complement and integrate the work in progress within DECADE in developing CARD (Carbon Degassing) database. MAGA database will allow researchers to insert data interactively and dynamically into a spatially referred relational database management system, as well as to extract data. MAGA kicked-off with the database set up and a complete literature survey on publications on volcanic gas fluxes, by including data on active craters degassing, diffuse soil degassing and fumaroles both from dormant closed-conduit volcanoes (e.g., Vulcano, Phlegrean Fields, Santorini, Nysiros, Teide, etc.) and open-vent volcanoes (e.g., Etna, Stromboli, etc.) in the Mediterranean area and Azores. For each geo-located gas emission site, the database holds images and description of the site and of the emission type (e.g., diffuse emission, plume, fumarole, etc.), gas chemical-isotopic composition (when available), gas temperature and gases fluxes magnitude. Gas sampling, analysis and flux measurement methods are also reported together with references and contacts to researchers expert of the site. Data can be accessed on the network from a web interface or as

  17. Plant Collections Online: Using Digital Herbaria in Biology Teaching

    Science.gov (United States)

    Flannery, Maura C.

    2013-01-01

    Herbaria are collections of preserved plants specimens, some of which date back to the 16th century. They are essential to botanical research, especially in systematics. They can also be important historical documents. The collections of Lewis and Clark, Carolus Linnaeus, and Charles Darwin, to name a few, are primary sources for the study of…

  18. Uploading, Searching and Visualizing of Paleomagnetic and Rock Magnetic Data in the Online MagIC Database

    Science.gov (United States)

    Minnett, R.; Koppers, A.; Tauxe, L.; Constable, C.; Donadini, F.

    2007-12-01

    The Magnetics Information Consortium (MagIC) is commissioned to implement and maintain an online portal to a relational database populated by both rock and paleomagnetic data. The goal of MagIC is to archive all available measurements and derived properties from paleomagnetic studies of directions and intensities, and for rock magnetic experiments (hysteresis, remanence, susceptibility, anisotropy). MagIC is hosted under EarthRef.org at http://earthref.org/MAGIC/ and will soon implement two search nodes, one for paleomagnetism and one for rock magnetism. Currently the PMAG node is operational. Both nodes provide query building based on location, reference, methods applied, material type and geological age, as well as a visual map interface to browse and select locations. Users can also browse the database by data type or by data compilation to view all contributions associated with well known earlier collections like PINT, GMPDB or PSVRL. The query result set is displayed in a digestible tabular format allowing the user to descend from locations to sites, samples, specimens and measurements. At each stage, the result set can be saved and, where appropriate, can be visualized by plotting global location maps, equal area, XY, age, and depth plots, or typical Zijderveld, hysteresis, magnetization and remanence diagrams. User contributions to the MagIC database are critical to achieving a useful research tool. We have developed a standard data and metadata template (version 2.3) that can be used to format and upload all data at the time of publication in Earth Science journals. Software tools are provided to facilitate population of these templates within Microsoft Excel. These tools allow for the import/export of text files and provide advanced functionality to manage and edit the data, and to perform various internal checks to maintain data integrity and prepare for uploading. The MagIC Contribution Wizard at http://earthref.org/MAGIC/upload.htm executes the upload

  19. TOWARD COLLECTIVE INTELLIGENCE OF ONLINE COMMUNITIES: A PRIMITIVE CONCEPTUAL MODEL

    Institute of Scientific and Technical Information of China (English)

    Shuangling LUO; Haoxiang XIA; Taketoshi YOSHIDA; Zhongtuo WANG

    2009-01-01

    Inspired by the ideas of Swarm Intelligence and the "global brain", a concept of "community intelligence" is suggested in the present paper, reflecting that some "intelligent" features may emerge in a Web-mediated online community from interactions and knowledge-transmissions between the community members. This possible research field of community intelligence is then examined under the backgrounds of "community" and "intelligence" researches. Furthermore, a conceptual model of community intelligence is developed from two views. From the structural view, the community intelligent system is modeled as a knowledge supernetwork that is comprised of triple interwoven networks of the media network, the human network, and the knowledge network. Furthermore, based on a dyad of knowledge in two forms of "knowing" and "knoware", the dynamic view describes the basic mechanics of the formation and evolution of "community intelligence". A few relevant research issues are shortly discussed on the basis of the proposed conceptual model.

  20. Online collective action dynamics of the crowd in social media

    CERN Document Server

    Agarwal, Nitin; Wigand, Rolf T

    2014-01-01

    This book explores and explains collective action in the new generation of Information and Communication Technologies (ICT) enabled by Web 2.0, also referred to as social media, and its capacity to help critical decision and policy making.

  1. Databases

    Directory of Open Access Journals (Sweden)

    Nick Ryan

    2004-01-01

    Full Text Available Databases are deeply embedded in archaeology, underpinning and supporting many aspects of the subject. However, as well as providing a means for storing, retrieving and modifying data, databases themselves must be a result of a detailed analysis and design process. This article looks at this process, and shows how the characteristics of data models affect the process of database design and implementation. The impact of the Internet on the development of databases is examined, and the article concludes with a discussion of a range of issues associated with the recording and management of archaeological data.

  2. A discussion on different techniques for GIS data collecting, precision, accuracy and quality of database

    OpenAIRE

    2004-01-01

    Nowadays, is a common sense the importance of geotechnologies in urban planning, transportation engineering and other different areas of knowledge. The Geographic Information System (GIS) is one of the geotechnologies that has been used increasingly. The collection of information and creation of a database are the most expensive, complex and important task in a GIS project. The collection of information results from the direct and indirect measurement of the real world. The reason for c...

  3. Online Databases for Taxonomy and Identification of Pathogenic Fungi and Proposal for a Cloud-Based Dynamic Data Network Platform.

    Science.gov (United States)

    Prakash, Peralam Yegneswaran; Irinyi, Laszlo; Halliday, Catriona; Chen, Sharon; Robert, Vincent; Meyer, Wieland

    2017-04-01

    The increase in public online databases dedicated to fungal identification is noteworthy. This can be attributed to improved access to molecular approaches to characterize fungi, as well as to delineate species within specific fungal groups in the last 2 decades, leading to an ever-increasing complexity of taxonomic assortments and nomenclatural reassignments. Thus, well-curated fungal databases with substantial accurate sequence data play a pivotal role for further research and diagnostics in the field of mycology. This minireview aims to provide an overview of currently available online databases for the taxonomy and identification of human and animal-pathogenic fungi and calls for the establishment of a cloud-based dynamic data network platform. Copyright © 2017 American Society for Microbiology.

  4. iPPI-DB: an online database of modulators of protein-protein interactions.

    Science.gov (United States)

    Labbé, Céline M; Kuenemann, Mélaine A; Zarzycka, Barbara; Vriend, Gert; Nicolaes, Gerry A F; Lagorce, David; Miteva, Maria A; Villoutreix, Bruno O; Sperandio, Olivier

    2016-01-01

    In order to boost the identification of low-molecular-weight drugs on protein-protein interactions (PPI), it is essential to properly collect and annotate experimental data about successful examples. This provides the scientific community with the necessary information to derive trends about privileged physicochemical properties and chemotypes that maximize the likelihood of promoting a given chemical probe to the most advanced stages of development. To this end we have developed iPPI-DB (freely accessible at http://www.ippidb.cdithem.fr), a database that contains the structure, some physicochemical characteristics, the pharmacological data and the profile of the PPI targets of several hundreds modulators of protein-protein interactions. iPPI-DB is accessible through a web application and can be queried according to two general approaches: using physicochemical/pharmacological criteria; or by chemical similarity to a user-defined structure input. In both cases the results are displayed as a sortable and exportable datasheet with links to external databases such as Uniprot, PubMed. Furthermore each compound in the table has a link to an individual ID card that contains its physicochemical and pharmacological profile derived from iPPI-DB data. This includes information about its binding data, ligand and lipophilic efficiencies, location in the PPI chemical space, and importantly similarity with known drugs, and links to external databases like PubChem, and ChEMBL.

  5. Factors of collective psychological empowerment of active users in the online health community med.over.net

    Directory of Open Access Journals (Sweden)

    Petrovčič Andraž

    2014-06-01

    Full Text Available Objective: This paper investigates the collective psychological empowerment of users of online health communities, which has been often overlooked in literature. Drawing on the theories of empowerment in the context of community psychology, it explores the factors - that are also an important characteristic of online health communities - that are associated with the collective psychological empowerment of online health community users.

  6. Participatory Learning through Behavioral and Cognitive Engagements in an Online Collective Information Searching Activity

    Science.gov (United States)

    Lin, Chia-Ching; Tsai, Chin-Chung

    2012-01-01

    This study aimed to investigate the relationships between college students' behavioral and cognitive engagements while performing an online collective information searching (CIS) activity. The activity aimed to assist the students in utilizing a social bookmarking application to exploit the Internet in a collective manner. A group of 101 college…

  7. Accessing and using chemical databases

    DEFF Research Database (Denmark)

    Nikolov, Nikolai Georgiev; Pavlov, Todor; Niemelä, Jay Russell

    2013-01-01

    Computer-based representation of chemicals makes it possible to organize data in chemical databases-collections of chemical structures and associated properties. Databases are widely used wherever efficient processing of chemical information is needed, including search, storage, retrieval......, and dissemination. Structure and functionality of chemical databases are considered. The typical kinds of information found in a chemical database are considered-identification, structural, and associated data. Functionality of chemical databases is presented, with examples of search and access types. More details...... are included about the OASIS database and platform and the Danish (Q)SAR Database online. Various types of chemical database resources are discussed, together with a list of examples....

  8. VizieR Online Data Catalog: ISO Astrophysical Spectroscopic Database (Jourdain de Muizon, 2005)

    Science.gov (United States)

    Jourdain de Muizon, Marie

    2005-10-01

    This database will eventually contain all the published infrared lines observed by ISO, the Infrared Space Observatory. At this stage only a few percent of the total content is included but it is increasing steadily. Thus what is presented at this stage is a beta-version of the final product. ISO - the Infrared Space Observatory - was operational during about 28 months, between November 1995 and May 1998, until its cooling fluid (liquid helium) burnt out (Kessler et al. 1996A&A...315L..27K). It was the first far-infrared satellite equipped with two medium and high resolution spectrometers, SWS (Short Wavelength Spectrometer, 2.38-45.2{mu}m, de Graauw et al. 1996A&A...315L..49D) and LWS (Long Wavelength Spectrometer, 43-197{mu}m, Clegg et al. 1996A&A...315L..38C). Both spectrometers could be operated in grating or Fabry-Perot mode. In addition, the two other ISO instruments also provided spectroscopic data: ISOCAM (the ISO Camera, Cesarsky et al. 1996A&A...315L..32C) had a CVF (Circular Variable Filter) mode in 3 bands covering the range 2.3-17.3{mu}m, and ISOPHOT (The Imaging Photo-Polarimeter, Lemke et al. 1996A&A...315L..64L) had a dual grating spectrometer (PHOT-S) with resolving power of order 90 in two bands (2.5-4.9{mu}m and 5.8-11.6{mu}m). Detailed information about ISO and its four ISO instruments can be found in "The ISO Handbook" available on-line at http://www.iso.vilspa.esa.es/ The novelty, the richness and the unicity of the ISO spectroscopic data is what motivated us in compiling this data in a systematic and homogeneous way in order to make it available to the whole astronomical community. No other past, current or foreseen space project will overwrite this data, hence the importance of this compilation. In addition, queries on the database content will be a useful tool for the preparation of follow-up observations with other space, airborne or ground-based observatories such as Herschel, SOFIA, ALMA, VLT and more. In this early version, the database

  9. Development of a New Branded UK Food Composition Database for an Online Dietary Assessment Tool.

    Science.gov (United States)

    Carter, Michelle C; Hancock, Neil; Albar, Salwa A; Brown, Helen; Greenwood, Darren C; Hardie, Laura J; Frost, Gary S; Wark, Petra A; Cade, Janet E

    2016-08-05

    The current UK food composition tables are limited, containing ~3300 mostly generic food and drink items. To reflect the wide range of food products available to British consumers and to potentially improve accuracy of dietary assessment, a large UK specific electronic food composition database (FCDB) has been developed. A mapping exercise has been conducted that matched micronutrient data from generic food codes to "Back of Pack" data from branded food products using a semi-automated process. After cleaning and processing, version 1.0 of the new FCDB contains 40,274 generic and branded items with associated 120 macronutrient and micronutrient data and 5669 items with portion images. Over 50% of food and drink items were individually mapped to within 10% agreement with the generic food item for energy. Several quality checking procedures were applied after mapping including; identifying foods above and below the expected range for a particular nutrient within that food group and cross-checking the mapping of items such as concentrated and raw/dried products. The new electronic FCDB has substantially increased the size of the current, publically available, UK food tables. The FCDB has been incorporated into myfood24, a new fully automated online dietary assessment tool and, a smartphone application for weight loss.

  10. Data-based online nonlinear extremum-seeker for wavefront sensorless adaptive optics OCT (Conference Presentation)

    Science.gov (United States)

    Jian, Yifan; Verstraete, Hans R. G. W.; Heisler, Morgan; Ju, Myeong Jin; Wahl, Daniel J.; Bliek, Laurens; Kalkman, Jeroen; Bonora, Stefano; Verhaegen, Michel; Sarunic, Marinko V.

    2017-02-01

    Adaptive optics has been successfully applied to cellular resolution imaging of the retina, enabling visualization of the characteristic mosaic patterns of the outer retina. Wavefront sensorless adaptive optics (WSAO) is a novel technique that facilitates high resolution ophthalmic imaging; it replaces the Hartmann-Shack Wavefront Sensor with an image-driven optimization algorithm and mitigates some the challenges encountered with sensor-based designs. However, WSAO generally requires longer time to perform aberrations correction than the conventional closed-loop adaptive optics. When used for in vivo retinal imaging applications, motion artifacts during the WSAO optimization process will affect the quality of the aberration correction. A faster converging optimization scheme needs to be developed to account for rapid temporal variation of the wavefront and continuously apply corrections. In this project, we investigate the Databased Online Nonlinear Extremum-seeker (DONE), a novel non-linear multivariate optimization algorithm in combination with in vivo human WSAO OCT imaging. We also report both hardware and software updates of our compact lens based WSAO 1060nm swept source OCT human retinal imaging system, including real time retinal layer segmentation and tracking (ILM and RPE), hysteresis correction for the multi-actuator adaptive lens, precise synchronization control for the 200kHz laser source, and a zoom lens unit for rapid switching of the field of view. Cross sectional images of the retinal layers and en face images of the cone photoreceptor mosaic acquired in vivo from research volunteers before and after WSAO optimization are presented.

  11. Development of a New Branded UK Food Composition Database for an Online Dietary Assessment Tool

    Science.gov (United States)

    Carter, Michelle C.; Hancock, Neil; Albar, Salwa A.; Brown, Helen; Greenwood, Darren C.; Hardie, Laura J.; Frost, Gary S.; Wark, Petra A.; Cade, Janet E.

    2016-01-01

    The current UK food composition tables are limited, containing ~3300 mostly generic food and drink items. To reflect the wide range of food products available to British consumers and to potentially improve accuracy of dietary assessment, a large UK specific electronic food composition database (FCDB) has been developed. A mapping exercise has been conducted that matched micronutrient data from generic food codes to “Back of Pack” data from branded food products using a semi-automated process. After cleaning and processing, version 1.0 of the new FCDB contains 40,274 generic and branded items with associated 120 macronutrient and micronutrient data and 5669 items with portion images. Over 50% of food and drink items were individually mapped to within 10% agreement with the generic food item for energy. Several quality checking procedures were applied after mapping including; identifying foods above and below the expected range for a particular nutrient within that food group and cross-checking the mapping of items such as concentrated and raw/dried products. The new electronic FCDB has substantially increased the size of the current, publically available, UK food tables. The FCDB has been incorporated into myfood24, a new fully automated online dietary assessment tool and, a smartphone application for weight loss. PMID:27527214

  12. T4SP Database 2.0: An Improved Database for Type IV Secretion Systems in Bacterial Genomes with New Online Analysis Tools

    Directory of Open Access Journals (Sweden)

    Na Han

    2016-01-01

    Full Text Available Type IV secretion system (T4SS can mediate the passage of macromolecules across cellular membranes and is essential for virulent and genetic material exchange among bacterial species. The Type IV Secretion Project 2.0 (T4SP 2.0 database is an improved and extended version of the platform released in 2013 aimed at assisting with the detection of Type IV secretion systems (T4SS in bacterial genomes. This advanced version provides users with web server tools for detecting the existence and variations of T4SS genes online. The new interface for the genome browser provides a user-friendly access to the most complete and accurate resource of T4SS gene information (e.g., gene number, name, type, position, sequence, related articles, and quick links to other webs. Currently, this online database includes T4SS information of 5239 bacterial strains. Conclusions. T4SS is one of the most versatile secretion systems necessary for the virulence and survival of bacteria and the secretion of protein and/or DNA substrates from a donor to a recipient cell. This database on virB/D genes of the T4SS system will help scientists worldwide to improve their knowledge on secretion systems and also identify potential pathogenic mechanisms of various microbial species.

  13. T4SP Database 2.0: An Improved Database for Type IV Secretion Systems in Bacterial Genomes with New Online Analysis Tools

    Science.gov (United States)

    Han, Na; Yu, Weiwen; Qiang, Yujun

    2016-01-01

    Type IV secretion system (T4SS) can mediate the passage of macromolecules across cellular membranes and is essential for virulent and genetic material exchange among bacterial species. The Type IV Secretion Project 2.0 (T4SP 2.0) database is an improved and extended version of the platform released in 2013 aimed at assisting with the detection of Type IV secretion systems (T4SS) in bacterial genomes. This advanced version provides users with web server tools for detecting the existence and variations of T4SS genes online. The new interface for the genome browser provides a user-friendly access to the most complete and accurate resource of T4SS gene information (e.g., gene number, name, type, position, sequence, related articles, and quick links to other webs). Currently, this online database includes T4SS information of 5239 bacterial strains. Conclusions. T4SS is one of the most versatile secretion systems necessary for the virulence and survival of bacteria and the secretion of protein and/or DNA substrates from a donor to a recipient cell. This database on virB/D genes of the T4SS system will help scientists worldwide to improve their knowledge on secretion systems and also identify potential pathogenic mechanisms of various microbial species.

  14. Update on Eus Diagnostics, Infection Trials and Online Slide Collection

    DEFF Research Database (Denmark)

    Boutrup, Torsten Snogdal; Fry, Christian

    2012-01-01

    reisolated from a rainbow trout, with clinically disease, resulted in no mortality in 10 three spotted guramis, with only one fish showing a slight reddening. We have performed intra muscular injection trials in rainbow trout at temperatures at 10, 15, 18 and 22 degrees Celsius respectively. Here we have...... that Oomycal growth in rainbow trout don’t support a normal pathogenic potential of the organism, but an attenuated strain with lower virulence. Following the above described trials we have collected material for histology, Oomycete reisolation and PCR. From this material, pictures will be uploaded to the EURL...

  15. The FH mutation database: an online database of fumarate hydratase mutations involved in the MCUL (HLRCC tumor syndrome and congenital fumarase deficiency

    Directory of Open Access Journals (Sweden)

    Tomlinson Ian PM

    2008-03-01

    Full Text Available Abstract Background Fumarate hydratase (HGNC approved gene symbol – FH, also known as fumarase, is an enzyme of the tricarboxylic acid (TCA cycle, involved in fundamental cellular energy production. First described by Zinn et al in 1986, deficiency of FH results in early onset, severe encephalopathy. In 2002, the Multiple Leiomyoma Consortium identified heterozygous germline mutations of FH in patients with multiple cutaneous and uterine leiomyomas, (MCUL: OMIM 150800. In some families renal cell cancer also forms a component of the complex and as such has been described as hereditary leiomyomatosis and renal cell cancer (HLRCC: OMIM 605839. The identification of FH as a tumor suppressor was an unexpected finding and following the identification of subunits of succinate dehydrogenase in 2000 and 2001, was only the second description of the involvement of an enzyme of intermediary metabolism in tumorigenesis. Description The FH mutation database is a part of the TCA cycle gene mutation database (formerly the succinate dehydrogenase gene mutation database and is based on the Leiden Open (source Variation Database (LOVD system. The variants included in the database were derived from the published literature and annotated to conform to current mutation nomenclature. The FH database applies HGVS nomenclature guidelines, and will assist researchers in applying these guidelines when directly submitting new sequence variants online. Since the first molecular characterization of an FH mutation by Bourgeron et al in 1994, a series of reports of both FH deficiency patients and patients with MCUL/HLRRC have described 107 variants, of which 93 are thought to be pathogenic. The most common type of mutation is missense (57%, followed by frameshifts & nonsense (27%, and diverse deletions, insertions and duplications. Here we introduce an online database detailing all reported FH sequence variants. Conclusion The FH mutation database strives to systematically

  16. A fusion algorithm for joins based on collections in Odra (Object Database for Rapid Application development)

    CERN Document Server

    Satish, Laika

    2011-01-01

    In this paper we present the functionality of a currently under development database programming methodology called ODRA (Object Database for Rapid Application development) which works fully on the object oriented principles. The database programming language is called SBQL (Stack based query language). We discuss some concepts in ODRA for e.g. the working of ODRA, how ODRA runtime environment operates, the interoperability of ODRA with .net and java .A view of ODRA's working with web services and xml. Currently the stages under development in ODRA are query optimization. So we present the prior work that is done in ODRA related to Query optimization and we also present a new fusion algorithm of how ODRA can deal with joins based on collections like set, lists, and arrays for query optimization.

  17. SCOOP: A Measurement and Database of Student Online Search Behavior and Performance

    Science.gov (United States)

    Zhou, Mingming

    2015-01-01

    The ability to access and process massive amounts of online information is required in many learning situations. In order to develop a better understanding of student online search process especially in academic contexts, an online tool (SCOOP) is developed for tracking mouse behavior on the web to build a more extensive account of student web…

  18. Application of Large-Scale Database-Based Online Modeling to Plant State Long-Term Estimation

    Science.gov (United States)

    Ogawa, Masatoshi; Ogai, Harutoshi

    Recently, attention has been drawn to the local modeling techniques of a new idea called “Just-In-Time (JIT) modeling”. To apply “JIT modeling” to a large amount of database online, “Large-scale database-based Online Modeling (LOM)” has been proposed. LOM is a technique that makes the retrieval of neighboring data more efficient by using both “stepwise selection” and quantization. In order to predict the long-term state of the plant without using future data of manipulated variables, an Extended Sequential Prediction method of LOM (ESP-LOM) has been proposed. In this paper, the LOM and the ESP-LOM are introduced.

  19. The IMPEx Protocol - building bridges between scientific databases and online tools

    Science.gov (United States)

    Al-Ubaidi, T.; Khodachenko, M. L.; Kallio, E. J.; Génot, V.; Modolo, R.; Hess, S.; Schmidt, W.; Scherf, M.; Topf, F.; Alexeev, I. I.; Gangloff, M.; Budnik, E.; Bouchemit, M.; Renard, B.; Bourrel, N.; Penou, E.; André, N.; Belenkaya, E. S.

    2014-04-01

    The FP7-SPACE project IMPEx (http://impex-fp7.oeaw.ac.at) was established as a result of scientific collaboration between research teams from Austria, Finland, France, and Russia, working on the integration of a set of data mining, analysis and modeling tools in the field of space plasma and planetary physics. The primary goal of the project is to bridge the gap between spacecraft measurements and up-to-date computational models of planetary environments, enabling their joint operation for a better understanding of related physical phenomena. The IMPEx Protocol constitutes one of the cornerstones of the integration effort. While the IMPEx Data Model assures that the information exchanged can be 'understood' and hence processed by every participating tool or database system, the protocol provides the means to leverage specific functionalities of the respective host system in conjunction with the data provided. Examples thereof would be services for calculating field lines and particle trajectories, on-the-fly modeling runs with specific parameters and so forth. Additionally there are also utility methods available that allow to e.g. access specific data files or support search interfaces by providing ranked lists of stored modeling runs for a given set of (upstream) parameters. The presentation offers an overview of the IMPEx protocol and addresses the motivation for some of the (technical)design decisions taken during the development process. Further the resulting SOAP based web service interface is discussed and individual services and their applications are addressed specifically. Last but not least the first available implementations of the protocol are presented and a brief overview of tools already leveraging the IMPEx protocol is provided. The presentation closes with an outlook on possible future applications as well as extensions of the IMPEx protocol, including information on how to get started when implementing the IMPEx protocol, in order to join the

  20. 77 FR 21618 - 60-Day Notice of Proposed Information Collection: Civilian Response Corps Database In-Processing...

    Science.gov (United States)

    2012-04-10

    ... Notice of Proposed Information Collection: Civilian Response Corps Database In-Processing Electronic Form... described below. The purpose of this notice is to allow 60 days for public comment in the Federal Register... of 1995. Title of Information Collection: Civilian Response Corps Database In-Processing...

  1. Multilevel participation within on-line collections of local memories as a practice of cultural citizenship

    NARCIS (Netherlands)

    Kreek, de Mike

    2011-01-01

    Collecting local memories on-line is a growing practice with participatory elements on different levels. Three levels of participation – micro, meso and macro – are introduced by describing an exemplary case: the Memory of East in Amsterdam. These levels of this particular case can be grounded in th

  2. Collecting annotations for induced musical emotion via online game with a purpose emotify

    NARCIS (Netherlands)

    Aljanaki, Anna|info:eu-repo/dai/nl/34570956X; Wiering, Frans|info:eu-repo/dai/nl/141928034; Veltkamp, Remco|info:eu-repo/dai/nl/084742984

    2014-01-01

    One of the major reasons why music is so enjoyable is its emotional impact. Indexing and searching by emotion would greatly increase the usability of online music collections. However, there is no consensus on the question which model of emotion would fit this task best. Such a model should be easy

  3. Collecting annotations for induced musical emotion via online game with a purpose emotify

    NARCIS (Netherlands)

    Aljanaki, Anna; Wiering, Frans; Veltkamp, Remco

    2014-01-01

    One of the major reasons why music is so enjoyable is its emotional impact. Indexing and searching by emotion would greatly increase the usability of online music collections. However, there is no consensus on the question which model of emotion would fit this task best. Such a model should be easy

  4. 76 FR 7874 - Notice of Proposed Information Collection for Public Comment on the Online Innovation Submission...

    Science.gov (United States)

    2011-02-11

    ... URBAN DEVELOPMENT Notice of Proposed Information Collection for Public Comment on the Online Innovation Submission Form for the Innovation of the Day Project AGENCY: Office of Policy Development and Research, HUD..., Office of Policy Development and Research, Department of Housing and Urban Development, 451 7th Street...

  5. 76 FR 34122 - 30-Day Notice of Proposed Information Collection: NEA/PI Online Performance Reporting System (PRS)

    Science.gov (United States)

    2011-06-10

    ... Notice of Proposed Information Collection: NEA/PI Online Performance Reporting System (PRS) ACTION... Collection: NEA/PI Online Performance Reporting System (PRS). OMB Control Number: 1405-0183. Type of Request... and standardized manner. The MEPI Performance Reporting System (PRS) enables enhanced monitoring...

  6. ePORT, NASA's Computer Database Program for System Safety Risk Management Oversight (Electronic Project Online Risk Tool)

    Science.gov (United States)

    Johnson, Paul W.

    2008-01-01

    ePORT (electronic Project Online Risk Tool) provides a systematic approach to using an electronic database program to manage a program/project risk management processes. This presentation will briefly cover the standard risk management procedures, then thoroughly cover NASA's Risk Management tool called ePORT. This electronic Project Online Risk Tool (ePORT) is a web-based risk management program that provides a common framework to capture and manage risks, independent of a programs/projects size and budget. It is used to thoroughly cover the risk management paradigm providing standardized evaluation criterion for common management reporting, ePORT improves Product Line, Center and Corporate Management insight, simplifies program/project manager reporting, and maintains an archive of data for historical reference.

  7. Using Dialindex for the Identification of Online Databases Relevant to Urban and Regional Planning.

    Science.gov (United States)

    Byler, Anne Meyer; Ravenhall, Mary

    1988-01-01

    Reports on a study designed to ascertain the occurrence of 10 terms from the field of urban planning in 55 databases available on the DIALOG system by searching the terms in the Dialindex file. Total postings and postings in 10 top ranking databases for each term are shown. (eight references) (MES)

  8. Using Web Database Tools To Facilitate the Construction of Knowledge in Online Courses.

    Science.gov (United States)

    McNeil, Sara G.; Robin, Bernard R.

    This paper presents an overview of database tools that dynamically generate World Wide Web materials and focuses on the use of these tools to support research activities, as well as teaching and learning. Database applications have been used in classrooms to support learning activities for over a decade, but, although business and e-commerce have…

  9. Developing an Online Database of National and Sub-National Clean Energy Policies

    Energy Technology Data Exchange (ETDEWEB)

    Haynes, R.; Cross, S.; Heinemann, A.; Booth, S.

    2014-06-01

    The Database of State Incentives for Renewables and Efficiency (DSIRE) was established in 1995 to provide summaries of energy efficiency and renewable energy policies offered by the federal and state governments. This primer provides an overview of the major policy, research, and technical topics to be considered when creating a similar clean energy policy database and website.

  10. 77 FR 47690 - 30-Day Notice of Proposed Information Collection: Civilian Response Corps Database In-Processing...

    Science.gov (United States)

    2012-08-09

    ... Notice of Proposed Information Collection: Civilian Response Corps Database In-Processing Electronic Form... to OMB of proposed collection of information. SUMMARY: The Department of State has submitted the following information collection request to the Office of Management and Budget (OMB) for approval...

  11. A geographically-diverse collection of 418 human gut microbiome pathway genome databases

    KAUST Repository

    Hahn, Aria S.

    2017-04-11

    Advances in high-throughput sequencing are reshaping how we perceive microbial communities inhabiting the human body, with implications for therapeutic interventions. Several large-scale datasets derived from hundreds of human microbiome samples sourced from multiple studies are now publicly available. However, idiosyncratic data processing methods between studies introduce systematic differences that confound comparative analyses. To overcome these challenges, we developed GutCyc, a compendium of environmental pathway genome databases (ePGDBs) constructed from 418 assembled human microbiome datasets using MetaPathways, enabling reproducible functional metagenomic annotation. We also generated metabolic network reconstructions for each metagenome using the Pathway Tools software, empowering researchers and clinicians interested in visualizing and interpreting metabolic pathways encoded by the human gut microbiome. For the first time, GutCyc provides consistent annotations and metabolic pathway predictions, making possible comparative community analyses between health and disease states in inflammatory bowel disease, Crohn’s disease, and type 2 diabetes. GutCyc data products are searchable online, or may be downloaded and explored locally using MetaPathways and Pathway Tools.

  12. ViralORFeome: an integrated database to generate a versatile collection of viral ORFs.

    Science.gov (United States)

    Pellet, J; Tafforeau, L; Lucas-Hourani, M; Navratil, V; Meyniel, L; Achaz, G; Guironnet-Paquet, A; Aublin-Gex, A; Caignard, G; Cassonnet, P; Chaboud, A; Chantier, T; Deloire, A; Demeret, C; Le Breton, M; Neveu, G; Jacotot, L; Vaglio, P; Delmotte, S; Gautier, C; Combet, C; Deleage, G; Favre, M; Tangy, F; Jacob, Y; Andre, P; Lotteau, V; Rabourdin-Combe, C; Vidalain, P O

    2010-01-01

    Large collections of protein-encoding open reading frames (ORFs) established in a versatile recombination-based cloning system have been instrumental to study protein functions in high-throughput assays. Such 'ORFeome' resources have been developed for several organisms but in virology, plasmid collections covering a significant fraction of the virosphere are still needed. In this perspective, we present ViralORFeome 1.0 (http://www.viralorfeome.com), an open-access database and management system that provides an integrated set of bioinformatic tools to clone viral ORFs in the Gateway(R) system. ViralORFeome provides a convenient interface to navigate through virus genome sequences, to design ORF-specific cloning primers, to validate the sequence of generated constructs and to browse established collections of virus ORFs. Most importantly, ViralORFeome has been designed to manage all possible variants or mutants of a given ORF so that the cloning procedure can be applied to any emerging virus strain. A subset of plasmid constructs generated with ViralORFeome platform has been tested with success for heterologous protein expression in different expression systems at proteome scale. ViralORFeome should provide our community with a framework to establish a large collection of virus ORF clones, an instrumental resource to determine functions, activities and binding partners of viral proteins.

  13. A database for on-line event analysis on a distributed memory machine

    CERN Document Server

    Argante, E; Van der Stok, P D V; Willers, Ian Malcolm

    1995-01-01

    Parallel in-memory databases can enhance the structuring and parallelization of programs used in High Energy Physics (HEP). Efficient database access routines are used as communication primitives which hide the communication topology in contrast to the more explicit communications like PVM or MPI. A parallel in-memory database, called SPIDER, has been implemented on a 32 node Meiko CS-2 distributed memory machine. The spider primitives generate a lower overhead than the one generated by PVM or PMI. The event reconstruction program, CPREAD of the CPLEAR experiment, has been used as a test case. Performance measurerate generated by CPLEAR.

  14. In-database processing of a large collection of remote sensing data: applications and implementation

    Science.gov (United States)

    Kikhtenko, Vladimir; Mamash, Elena; Chubarov, Dmitri; Voronina, Polina

    2016-04-01

    Large archives of remote sensing data are now available to scientists, yet the need to work with individual satellite scenes or product files constrains studies that span a wide temporal range or spatial extent. The resources (storage capacity, computing power and network bandwidth) required for such studies are often beyond the capabilities of individual geoscientists. This problem has been tackled before in remote sensing research and inspired several information systems. Some of them such as NASA Giovanni [1] and Google Earth Engine have already proved their utility for science. Analysis tasks involving large volumes of numerical data are not unique to Earth Sciences. Recent advances in data science are enabled by the development of in-database processing engines that bring processing closer to storage, use declarative query languages to facilitate parallel scalability and provide high-level abstraction of the whole dataset. We build on the idea of bridging the gap between file archives containing remote sensing data and databases by integrating files into relational database as foreign data sources and performing analytical processing inside the database engine. Thereby higher level query language can efficiently address problems of arbitrary size: from accessing the data associated with a specific pixel or a grid cell to complex aggregation over spatial or temporal extents over a large number of individual data files. This approach was implemented using PostgreSQL for a Siberian regional archive of satellite data products holding hundreds of terabytes of measurements from multiple sensors and missions taken over a decade-long span. While preserving the original storage layout and therefore compatibility with existing applications the in-database processing engine provides a toolkit for provisioning remote sensing data in scientific workflows and applications. The use of SQL - a widely used higher level declarative query language - simplifies interoperability

  15. MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level.

    Science.gov (United States)

    Chiapello, Hélène; Gendrault, Annie; Caron, Christophe; Blum, Jérome; Petit, Marie-Agnès; El Karoui, Meriem

    2008-11-27

    The recent availability of complete sequences for numerous closely related bacterial genomes opens up new challenges in comparative genomics. Several methods have been developed to align complete genomes at the nucleotide level but their use and the biological interpretation of results are not straightforward. It is therefore necessary to develop new resources to access, analyze, and visualize genome comparisons. Here we present recent developments on MOSAIC, a generalist comparative bacterial genome database. This database provides the bacteriologist community with easy access to comparisons of complete bacterial genomes at the intra-species level. The strategy we developed for comparison allows us to define two types of regions in bacterial genomes: backbone segments (i.e., regions conserved in all compared strains) and variable segments (i.e., regions that are either specific to or variable in one of the aligned genomes). Definition of these segments at the nucleotide level allows precise comparative and evolutionary analyses of both coding and non-coding regions of bacterial genomes. Such work is easily performed using the MOSAIC Web interface, which allows browsing and graphical visualization of genome comparisons. The MOSAIC database now includes 493 pairwise comparisons and 35 multiple maximal comparisons representing 78 bacterial species. Genome conserved regions (backbones) and variable segments are presented in various formats for further analysis. A graphical interface allows visualization of aligned genomes and functional annotations. The MOSAIC database is available online at http://genome.jouy.inra.fr/mosaic.

  16. Expanded national database collection and data coverage in the FINDbase worldwide database for clinically relevant genomic variation allele frequencies.

    Science.gov (United States)

    Viennas, Emmanouil; Komianou, Angeliki; Mizzi, Clint; Stojiljkovic, Maja; Mitropoulou, Christina; Muilu, Juha; Vihinen, Mauno; Grypioti, Panagiota; Papadaki, Styliani; Pavlidis, Cristiana; Zukic, Branka; Katsila, Theodora; van der Spek, Peter J; Pavlovic, Sonja; Tzimas, Giannis; Patrinos, George P

    2017-01-04

    FINDbase (http://www.findbase.org) is a comprehensive data repository that records the prevalence of clinically relevant genomic variants in various populations worldwide, such as pathogenic variants leading mostly to monogenic disorders and pharmacogenomics biomarkers. The database also records the incidence of rare genetic diseases in various populations, all in well-distinct data modules. Here, we report extensive data content updates in all data modules, with direct implications to clinical pharmacogenomics. Also, we report significant new developments in FINDbase, namely (i) the release of a new version of the ETHNOS software that catalyzes development curation of national/ethnic genetic databases, (ii) the migration of all FINDbase data content into 90 distinct national/ethnic mutation databases, all built around Microsoft's PivotViewer (http://www.getpivot.com) software (iii) new data visualization tools and (iv) the interrelation of FINDbase with DruGeVar database with direct implications in clinical pharmacogenomics. The abovementioned updates further enhance the impact of FINDbase, as a key resource for Genomic Medicine applications.

  17. VizieR Online Data Catalog: Database of circumstellar OH masers (Engels+, 2015)

    Science.gov (United States)

    Engels, D.; Bunzel, F.

    2015-08-01

    We present a new database of circumstellar OH masers at 1612, 1665, and 1667MHz in the Milky Way galaxy in tabular form. The database (version 2.4) contains 13655 observations and 2341 different stars detected in at least one transition and includes published data until end of 2014. Interferometric follow-up observations and monitor programs are stored in two auxiliary tables. (3 data files).

  18. The "Prometeo" study: online collection of clinical data and outcome of Italian patients with acute nonvariceal upper gastrointestinal bleeding.

    Science.gov (United States)

    Del Piano, Mario; Bianco, Maria Antonia; Cipolletta, Livio; Zambelli, Alessandro; Chilovi, Fausto; Di Matteo, Giovanni; Pagliarulo, Michela; Ballarè, Marco; Rotondano, Gianluca

    2013-04-01

    To implement an online, prospective collection of clinical data and outcome of patients with acute nonvariceal upper gastrointestinal bleeding (UGIB) in Italy ("Prometeo" study). Epidemiology, clinical features, and outcomes of nonvariceal UGIB are mainly known by retrospective studies and are probably changing. Data were collected by 13 Gastrointestinal Units in Italy from June 2006 to June 2007 (phase 1) and from December 2008 to December 2009 (phase 2): an interim analysis of data was performed between the 2 phases to optimize the online database. All the patients consecutively admitted for acute nonvariceal UGIB were enrolled. Demographic and clinical data were collected, a diagnostic endoscopy performed, with endoscopic hemostasis if indicated. One thousand four hundred thirteen patients (M=932, mean age±SD=66.5±15.8; F=481, mean age±SD=74.2±14.6) were enrolled. Comorbidities were present in 83%. 52.4% were treated with acetyl salicylic acid or other nonsteroidal anti-inflammatory drugs (NSAIDs): only 13.9% had an effective gastroprotection. Previous episodes of UGIB were present in 13.3%. Transfusion were needed in 43.9%. Shock was present in 9.3%. Endoscopic diagnosis was made in 93.2%: peptic lesions were the main cause of bleeding (duodenal ulcer 36.2%, gastric ulcer 29.6%, gastric/duodenal erosions 10.9%). At endoscopy, Helicobacter pylori was searched in 37.2%, and found positive in 51.3% of tested cases. Early rebleeding was observed in 5.4%: surgery was required in 14.3% of them. Bleeding-related death occurred in 4.0%: at multivariate analysis, the risk of death was correlated with female sex [odds ratio (OR=2.19, P=0.0089)], presence of neoplasia (OR=2.70, P=0.0057) or multiple comorbidities (OR=5.04, P=0.0280), shock at admission (OR=4.55, P=0.0001), and early rebleeding (OR=1.47, P=0.004). Prometeo database has provided an up-to-date picture of acute nonvariceal UGIB in Italy: patients are elderly, predominantly males, and with important

  19. Greater Than The Sum of Its Parts:Building Up A Co-operative Database of Pearl River Delta Collection

    Institute of Scientific and Technical Information of China (English)

    PaulW.T.Poon; Ph.D.,F.L.A

    1994-01-01

    This paper starts with a brief description of what a database is followed by a short history of the development of the database system and its use; it also notes the proliferation of various kinds of databases in the 1990s. It then goes on to outline the background of establishing a Pearl River Delta Collection at the City University of Hong Kong and the Hong Kong Lingnan College. One of the tasks in this project is to build up a database of Pearl River Delta-related materials available in all the UPGC(University and Polytechnic Grant Committee)libraries in Hong Kong. The database design and structure are described, and the problems associated with data collection, source data, and updating together with their solutions are explained.

  20. A study of the effects of students’ cognitive styles on their learning behaviors of online database search strategies

    Institute of Scientific and Technical Information of China (English)

    Ying; FENG; Liren; GAN; Deyi; QIAO

    2012-01-01

    Purpose:Based on a quasi-experimental design,this study sought to investigate the effects of two different cognitive styles,field independence and field dependence,on students’learning behaviors of online database search strategies.Design/methodology/approach:An experiment was carried out among senior students in a Chinese university.Findings:The field independent(FI)subjects performed better in terms of their search strategy scores.When comparing how many people in each cognitive style group learned the targeted search strategies,more field dependent(FD)subjects were successors,whereas the FI subjects were more inclined to learn from their past experience.When analyzing the reasons for the subjects’selection of search strategies,we found that the FI subjects demonstrated more rational thinking behaviors than the FD subjects.Research limitations:Only 28 students participated in the study,which was a relatively small sample size.A larger sample will give more information and therefore more precise results.Practical implications:This research can provide some suggestions to the information system designers on how the system interface can be better designed to suit the cognitive styles of different users.Originality/value:So far,few studies have been published about the effects of users’cognitive styles on their learning behaviors of online database search strategies.

  1. The Vivax Surveyor: Online mapping database for Plasmodium vivax clinical trials

    Directory of Open Access Journals (Sweden)

    R.J. Commons

    2017-08-01

    Conclusions: Over the last 20 years there has been a substantial increase in clinical research on the treatment of P. vivax, which has generated a greater awareness of the global extent of chloroquine resistance. The WWARN open access, online interactive map provides up to date information of areas where drug resistant P. vivax is emerging.

  2. Development of an online library of patient-reported outcome measures in gastroenterology: the GI-PRO database.

    Science.gov (United States)

    Khanna, Puja; Agarwal, Nikhil; Khanna, Dinesh; Hays, Ron D; Chang, Lin; Bolus, Roger; Melmed, Gil; Whitman, Cynthia B; Kaplan, Robert M; Ogawa, Rikke; Snyder, Bradley; Spiegel, Brennan Mr

    2014-02-01

    Because gastrointestinal (GI) illnesses can cause physical, emotional, and social distress, patient-reported outcomes (PROs) are used to guide clinical decision making, conduct research, and seek drug approval. It is important to develop a mechanism for identifying, categorizing, and evaluating the over 100 GI PROs that exist. Here we describe a new, National Institutes of Health (NIH)-supported, online PRO clearinghouse-the GI-PRO database. Using a protocol developed by the NIH Patient-Reported Outcome Measurement Information System (PROMIS(®)), we performed a systematic review to identify English-language GI PROs. We abstracted PRO items and developed an online searchable item database. We categorized symptoms into content "bins" to evaluate a framework for GI symptom reporting. Finally, we assigned a score for the methodological quality of each PRO represented in the published literature (0-20 range; higher indicates better). We reviewed 15,697 titles (κ>0.6 for title and abstract selection), from which we identified 126 PROs. Review of the PROs revealed eight GI symptom "bins": (i) abdominal pain, (ii) bloat/gas, (iii) diarrhea, (iv) constipation, (v) bowel incontinence/soilage, (vi) heartburn/reflux, (vii) swallowing, and (viii) nausea/vomiting. In addition to these symptoms, the PROs covered four psychosocial domains: (i) behaviors, (ii) cognitions, (iii) emotions, and (iv) psychosocial impact. The quality scores were generally low (mean 8.88 ± 4.19; 0 (min)-20 (max). In addition, 51% did not include patient input in developing the PRO, and 41% provided no information on score interpretation. GI PROs cover a wide range of biopsychosocial symptoms. Although plentiful, GI PROs are limited by low methodological quality. Our online PRO library (www.researchcore.org/gipro/) can help in selecting PROs for clinical and research purposes.

  3. Collecting Family Health History using an Online Social Network: a Nationwide Survey among Potential Users

    Science.gov (United States)

    Welch, Brandon M.; O’Connell, Nathaniel S.; Qanungo, Suparna; Halbert-Hughes, Chanita; Schiffman, Joshua D.

    2015-01-01

    Family health history (FHx) is one of the most important risk factors for disease. Unfortunately, collection and use of FHx is under-utilized in the clinical setting. Efforts to improve collection of FHx have had minimal impact. A novel approach to collect FHx using social networking capabilities is being explored. We conducted a nationwide survey of 5,258 respondents to 1- assess the interest in using an online social network for FHx, 2- identify if such a tool would have clinical utility, and 3- identify notable trends and potential concerns. We found survey respondents to be very supportive of the proposed approach and interesting trends related to age, education, and race were identified. Results from this survey will be used to guide future research and development of a proposed FHx social network application. PMID:26958272

  4. Using online databases for landslide susceptibility assessment: an example from the Veneto Region (northeastern Italy)

    OpenAIRE

    2011-01-01

    In this paper, spatial data available in the Italian portals was used to evaluate the landslide susceptibility of the Euganean Hills Regional Park, located SW of Padua (northeastern Italy). Quality, applicability and possible analysis scales of the online data were investigated.

    After a brief overview on the WebGIS portals around the world, their contents and tools for natural risk analyses, a susceptibility analysis of the study area was carried out using a simple probab...

  5. VizieR Online Data Catalog: POLLUX database of synthetic stellar spectra (Palacios+ 2010-2015)

    Science.gov (United States)

    Palacios, A.; Gebran, M.; Josselin, E.; Martins, F.; Plez, B.; Belmas, M.; Lebre, A.

    2010-04-01

    A description of the data (high resolution synthetic spectra and spectral energy distributions) in the POLLUX database is presented in the form of an ascii table providing parameters that can be queried (Teff, logg, code, metallicity) and giving the filename and URL where a fits file can be retrieved. (1 data file).

  6. A collective theory of happiness: words related to the word "happiness" in Swedish online newspapers.

    Science.gov (United States)

    Garcia, Danilo; Sikström, Sverker

    2013-06-01

    It may be suggested that the representation of happiness in online media is collective in nature because it is a picture of happiness communicated by relatively few individuals to the masses. The present study is based on articles published in Swedish daily online newspapers in 2010; the data corpus comprises 1.5 million words. We investigated which words were most (un)common in articles containing the word "happiness" as compared with articles not containing this word. The results show that words related to people (by use of all relevant pronouns: you/me and us/them); important others (e.g., grandmother, mother); the Swedish royal wedding (e.g., Prince Daniel, Princess Victoria); and the FIFA World Cup (e.g., Zlatan, Argentina, Drogba) were highly recurrent in articles containing the word happiness. In contrast, words related to objects, such as money (e.g., millions, billions), bestselling gadgets (e.g., iPad, iPhone), and companies (e.g., Google, Windows), were predictive of contexts not recurrent with the word happiness. The results presented here are in accordance with findings in the happiness literature showing that relationships, not material things, are what make people happy. We suggest that our findings mirror a collective theory of happiness, that is, a shared picture or agreement, among members of a community, concerning what makes people happy. The fact that this representation is made public on such a large scale makes it collective in nature.

  7. Online integrated solution to collect data, generate information and manage events in the human biomonitoring field.

    Science.gov (United States)

    Reis, M Fátima; Tedim, João; Aguiar, Pedro; Miguel, J Pereira; Casteleyn, Ludwine; Joas, Reinhard; Van Tongelen, Birgit

    2007-05-01

    In the ambit of Work Package 1 of the ESBIO Project, an online integrated solution to collect data, to generate information, and to manage mainly information-sharing events related with human biomonitoring within Europe has been designed and is being implemented. The present paper summarises the methodological approaches used by the authors as proposers, general promoters and disseminators of this strategic concept, as well as the first outcomes and future actions to be taken, in the short and longer term, to face present and future challenges to make this innovative solution happen.

  8. Crystallography Open Database (COD): an open-access collection of crystal structures and platform for world-wide collaboration.

    Science.gov (United States)

    Gražulis, Saulius; Daškevič, Adriana; Merkys, Andrius; Chateigner, Daniel; Lutterotti, Luca; Quirós, Miguel; Serebryanaya, Nadezhda R; Moeck, Peter; Downs, Robert T; Le Bail, Armel

    2012-01-01

    Using an open-access distribution model, the Crystallography Open Database (COD, http://www.crystallography.net) collects all known 'small molecule / small to medium sized unit cell' crystal structures and makes them available freely on the Internet. As of today, the COD has aggregated ~150,000 structures, offering basic search capabilities and the possibility to download the whole database, or parts thereof using a variety of standard open communication protocols. A newly developed website provides capabilities for all registered users to deposit published and so far unpublished structures as personal communications or pre-publication depositions. Such a setup enables extension of the COD database by many users simultaneously. This increases the possibilities for growth of the COD database, and is the first step towards establishing a world wide Internet-based collaborative platform dedicated to the collection and curation of structural knowledge.

  9. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

    Science.gov (United States)

    Caspi, Ron; Billington, Richard; Ferrer, Luciana; Foerster, Hartmut; Fulcher, Carol A; Keseler, Ingrid M; Kothari, Anamika; Krummenacker, Markus; Latendresse, Mario; Mueller, Lukas A; Ong, Quang; Paley, Suzanne; Subhraveti, Pallavi; Weaver, Daniel S; Karp, Peter D

    2016-01-01

    The MetaCyc database (MetaCyc.org) is a freely accessible comprehensive database describing metabolic pathways and enzymes from all domains of life. The majority of MetaCyc pathways are small-molecule metabolic pathways that have been experimentally determined. MetaCyc contains more than 2400 pathways derived from >46,000 publications, and is the largest curated collection of metabolic pathways. BioCyc (BioCyc.org) is a collection of 5700 organism-specific Pathway/Genome Databases (PGDBs), each containing the full genome and predicted metabolic network of one organism, including metabolites, enzymes, reactions, metabolic pathways, predicted operons, transport systems, and pathway-hole fillers. The BioCyc website offers a variety of tools for querying and analyzing PGDBs, including Omics Viewers and tools for comparative analysis. This article provides an update of new developments in MetaCyc and BioCyc during the last two years, including addition of Gibbs free energy values for compounds and reactions; redesign of the primary gene/protein page; addition of a tool for creating diagrams containing multiple linked pathways; several new search capabilities, including searching for genes based on sequence patterns, searching for databases based on an organism's phenotypes, and a cross-organism search; and a metabolite identifier translation service.

  10. ScriptingRT: A Software Library for Collecting Response Latencies in Online Studies of Cognition.

    Directory of Open Access Journals (Sweden)

    Thomas W Schubert

    Full Text Available ScriptingRT is a new open source tool to collect response latencies in online studies of human cognition. ScriptingRT studies run as Flash applets in enabled browsers. ScriptingRT provides the building blocks of response latency studies, which are then combined with generic Apache Flex programming. Six studies evaluate the performance of ScriptingRT empirically. Studies 1-3 use specialized hardware to measure variance of response time measurement and stimulus presentation timing. Studies 4-6 implement a Stroop paradigm and run it both online and in the laboratory, comparing ScriptingRT to other response latency software. Altogether, the studies show that Flash programs developed in ScriptingRT show a small lag and an increased variance in response latencies. However, this did not significantly influence measured effects: The Stroop effect was reliably replicated in all studies, and the found effects did not depend on the software used. We conclude that ScriptingRT can be used to test response latency effects online.

  11. Development of an online database of typical food portion sizes in Irish population groups.

    Science.gov (United States)

    Lyons, Jacqueline; Walton, Janette; Flynn, Albert

    2013-01-01

    The Irish Food Portion Sizes Database (available at www.iuna.net) describes typical portion weights for an extensive range of foods and beverages for Irish children, adolescents and adults. The present paper describes the methodologies used to develop the database and some key characteristics of the portion weight data contained therein. The data are derived from three large, cross-sectional food consumption surveys carried out in Ireland over the last decade: the National Children's Food Survey (2003-2004), National Teens' Food Survey (2005-2006) and National Adult Nutrition Survey (2008-2010). Median, 25th and 75th percentile portion weights are described for a total of 545 items across the three survey groups, split by age group or sex as appropriate. The typical (median) portion weights reported for adolescents and adults are similar for many foods, while those reported for children are notably smaller. Adolescent and adult males generally consume larger portions than their female counterparts, though similar portion weights may be consumed where foods are packaged in unit amounts (for example, pots of yoghurt). The inclusion of energy under-reporters makes little difference to the estimation of typical portion weights in adults. The data have wide-ranging applications in dietary assessment and food labelling, and will serve as a useful reference against which to compare future portion size data from the Irish population. The present paper provides a useful context for researchers and others wishing to use the Irish Food Portion Sizes Database, and may guide researchers in other countries in establishing similar databases of their own.

  12. Traditional Medicine Collection Tracking System (TM-CTS): a database for ethnobotanically driven drug-discovery programs.

    Science.gov (United States)

    Harris, Eric S J; Erickson, Sean D; Tolopko, Andrew N; Cao, Shugeng; Craycroft, Jane A; Scholten, Robert; Fu, Yanling; Wang, Wenquan; Liu, Yong; Zhao, Zhongzhen; Clardy, Jon; Shamu, Caroline E; Eisenberg, David M

    2011-05-17

    Ethnobotanically driven drug-discovery programs include data related to many aspects of the preparation of botanical medicines, from initial plant collection to chemical extraction and fractionation. The Traditional Medicine Collection Tracking System (TM-CTS) was created to organize and store data of this type for an international collaborative project involving the systematic evaluation of commonly used Traditional Chinese Medicinal plants. The system was developed using domain-driven design techniques, and is implemented using Java, Hibernate, PostgreSQL, Business Intelligence and Reporting Tools (BIRT), and Apache Tomcat. The TM-CTS relational database schema contains over 70 data types, comprising over 500 data fields. The system incorporates a number of unique features that are useful in the context of ethnobotanical projects such as support for information about botanical collection, method of processing, quality tests for plants with existing pharmacopoeia standards, chemical extraction and fractionation, and historical uses of the plants. The database also accommodates data provided in multiple languages and integration with a database system built to support high throughput screening based drug discovery efforts. It is accessed via a web-based application that provides extensive, multi-format reporting capabilities. This new database system was designed to support a project evaluating the bioactivity of Chinese medicinal plants. The software used to create the database is open source, freely available, and could potentially be applied to other ethnobotanically driven natural product collection and drug-discovery programs. Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.

  13. Traditional Medicine Collection Tracking System (TM-CTS): A Database for Ethnobotanically-Driven Drug-Discovery Programs

    Science.gov (United States)

    Harris, Eric S. J.; Erickson, Sean D.; Tolopko, Andrew N.; Cao, Shugeng; Craycroft, Jane A.; Scholten, Robert; Fu, Yanling; Wang, Wenquan; Liu, Yong; Zhao, Zhongzhen; Clardy, Jon; Shamu, Caroline E.; Eisenberg, David M.

    2011-01-01

    Aim of the study. Ethnobotanically-driven drug-discovery programs include data related to many aspects of the preparation of botanical medicines, from initial plant collection to chemical extraction and fractionation. The Traditional Medicine-Collection Tracking System (TM-CTS) was created to organize and store data of this type for an international collaborative project involving the systematic evaluation of commonly used Traditional Chinese Medicinal plants. Materials and Methods. The system was developed using domain-driven design techniques, and is implemented using Java, Hibernate, PostgreSQL, Business Intelligence and Reporting Tools (BIRT), and Apache Tomcat. Results. The TM-CTS relational database schema contains over 70 data types, comprising over 500 data fields. The system incorporates a number of unique features that are useful in the context of ethnobotanical projects such as support for information about botanical collection, method of processing, quality tests for plants with existing pharmacopoeia standards, chemical extraction and fractionation, and historical uses of the plants. The database also accommodates data provided in multiple languages and integration with a database system built to support high throughput screening based drug discovery efforts. It is accessed via a web-based application that provides extensive, multi-format reporting capabilities. Conclusions. This new database system was designed to support a project evaluating the bioactivity of Chinese medicinal plants. The software used to create the database is open source, freely available, and could potentially be applied to other ethnobotanically-driven natural product collection and drug-discovery programs. PMID:21420479

  14. Method of Online Analytical Processing on Nucleotide Sequences Database%核酸序列数据库上的联机分析处理方法

    Institute of Scientific and Technical Information of China (English)

    王敞; 陈增强; 袁著祉

    2003-01-01

    This paper proposes a new method of Online Analytical Processing on EMBL Nucleotide SequencesDatabase. This scheme is used to automatically restore flat file data into relational database, which is then convertedinto OLAP's data marts. Both the quality and speed of analysis will be greatly improved based on the data marts. Webelieve that this method is a powerful and flexible tool and can be seen as successful application of data mining inmolecule Biology.

  15. SpiroESTdb: a transcriptome database and online tool for sparganum expressed sequences tags

    Directory of Open Access Journals (Sweden)

    Kim Dae-Won

    2012-03-01

    Full Text Available Abstract Background Sparganum (plerocercoid of Spirometra erinacei is a parasite that possesses the remarkable ability to survive by successfully modifying its physiology and morphology to suit various hosts and can be found in various tissues, even the nervous system. However, surprisingly little is known about the molecular function of genes that are expressed during the course of the parasite life cycle. To begin to decipher the molecular processes underlying gene function, we constructed a database of expressed sequence tags (ESTs generated from sparganum. Findings SpiroESTdb is a web-based information resource that is built upon the annotation and curation of 5,655 ESTs data. SpiroESTdb provides an integrated platform for expressed sequence data, expression dynamics, functional genes, genetic markers including single nucleotide polymorphisms and tandem repeats, gene ontology and KEGG pathway information. Moreover, SpiroESTdb supports easy access to gene pages, such as (i curation and query forms, (ii in silico expression profiling and (iii BLAST search tools. Comprehensive descriptions of the sparganum content of all sequenced data are available, including summary reports. The contents of SpiroESTdb can be viewed and downloaded from the web (http://pathod.cdc.go.kr/spiroestdb. Conclusions This integrative web-based database of sequence data, functional annotations and expression profiling data will serve as a useful tool to help understand and expand the characterization of parasitic infections. It can also be used to identify potential industrial drug targets and vaccine candidate genes.

  16. PVOL: The Planetary Virtual Observatory & Laboratory. An online database of the Outer Planets images.

    Science.gov (United States)

    Morgado, A.; Sánchez-Lavega, A.; Rojas, J. F.; Hueso, R.

    2005-08-01

    The collaboration between amateurs astronomers and the professional community has been fruitful on many areas of astronomy. The development of the Internet has allowed a better than ever capability of sharing information worldwide and access to other observers data. For many years now the International Jupiter Watch (IJW) Atmospheric discipline has coordinated observational efforts for long-term studies of the atmosphere of Jupiter. The International Outer Planets Watch (IOPW) has extended its labours to the four Outer Planets. Here we present the Planetary Virtual Observatory & Laboratory (PVOL), a website database where we integer IJW and IOPW images. At PVOL observers can submit their data and professionals can search for images under a wide variety of useful criteria such as date and time, filters used, observer, or central meridian longitude. PVOL is aimed to grow as an organized easy to use database of amateur images of the Outer Planets. The PVOL web address is located at http://www.pvol.ehu.es/ and coexists with the traditional IOPW site: http://www.ehu.es/iopw/ Acknowledgements: This work has been funded by Spanish MCYT PNAYA2003-03216, fondos FEDER and Grupos UPV 15946/2004. R. Hueso acknowledges a post-doc fellowship from Gobierno Vasco.

  17. Ingnet On-line: The 1988-2002 Ingv Seismic Waveforms Database

    Science.gov (United States)

    di Stefano, R.; Amato, A.; Mele, F.; Kissling, E.

    The increasing need for global information exchange is strongly influencing data us- age and sharing in public research. Seismological sciences also greatly benefit from this change in data exchange policy. In Eurasia several national seismic networks have been continuously active since the first part of the last century and numerous seismo- logical services exist for the past few decades. Hence, a large number of analog and digital waveforms have been recorded, though the data from different services, with a few exceptions, remain unmerged. In the Italian peninsula (western Mediterranean region) the INGV National Seismic Network recorded more than 80.000 earthquakes during the last 20 years, 68.000 of which have waveforms in digital format (with more than 250.000 recordings). We present first results of a joint project between INGV and ETH, to obtain a high-resolution seismic velocity model for the Italian peninsula and surrounding regions. In a first step all available waveforms have been extracted and re-organized in a new database that will be soon open to the international scien- tific community through an easy-to-access internet front-end. Waveforms have been converted from an internal INGV format to the widely known and used SAC format completing the headers with all information necessary for a wide range of seismologi- cal investigations. We present here the structure of this database and its characteristics, and the conditions for accessibility through the INGV web site.

  18. Canis mtDNA HV1 database: a web-based tool for collecting and surveying Canis mtDNA HV1 haplotype in public database.

    Science.gov (United States)

    Thai, Quan Ke; Chung, Dung Anh; Tran, Hoang-Dung

    2017-06-26

    Canine and wolf mitochondrial DNA haplotypes, which can be used for forensic or phylogenetic analyses, have been defined in various schemes depending on the region analyzed. In recent studies, the 582 bp fragment of the HV1 region is most commonly used. 317 different canine HV1 haplotypes have been reported in the rapidly growing public database GenBank. These reported haplotypes contain several inconsistencies in their haplotype information. To overcome this issue, we have developed a Canis mtDNA HV1 database. This database collects data on the HV1 582 bp region in dog mitochondrial DNA from the GenBank to screen and correct the inconsistencies. It also supports users in detection of new novel mutation profiles and assignment of new haplotypes. The Canis mtDNA HV1 database (CHD) contains 5567 nucleotide entries originating from 15 subspecies in the species Canis lupus. Of these entries, 3646 were haplotypes and grouped into 804 distinct sequences. 319 sequences were recognized as previously assigned haplotypes, while the remaining 485 sequences had new mutation profiles and were marked as new haplotype candidates awaiting further analysis for haplotype assignment. Of the 3646 nucleotide entries, only 414 were annotated with correct haplotype information, while 3232 had insufficient or lacked haplotype information and were corrected or modified before storing in the CHD. The CHD can be accessed at http://chd.vnbiology.com . It provides sequences, haplotype information, and a web-based tool for mtDNA HV1 haplotyping. The CHD is updated monthly and supplies all data for download. The Canis mtDNA HV1 database contains information about canine mitochondrial DNA HV1 sequences with reconciled annotation. It serves as a tool for detection of inconsistencies in GenBank and helps identifying new HV1 haplotypes. Thus, it supports the scientific community in naming new HV1 haplotypes and to reconcile existing annotation of HV1 582 bp sequences.

  19. STAR Online Framework: from Metadata Collection to Event Analysis and System Control

    Science.gov (United States)

    Arkhipkin, D.; Lauret, J.

    2015-05-01

    In preparation for the new era of RHIC running (RHIC-II upgrades and possibly, the eRHIC era), the STAR experiment is expanding its modular Message Interface and Reliable Architecture framework (MIRA). MIRA allowed STAR to integrate meta-data collection, monitoring, and online QA components in a very agile and efficient manner using a messaging infrastructure approach. In this paper, we briefly summarize our past achievements, provide an overview of the recent development activities focused on messaging patterns and describe our experience with the complex event processor (CEP) recently integrated into the MIRA framework. CEP was used in the recent RHIC Run 14, which provided practical use cases. Finally, we present our requirements and expectations for the planned expansion of our systems, which will allow our framework to acquire features typically associated with Detector Control Systems. Special attention is given to aspects related to latency, scalability and interoperability within heterogeneous set of services, various data and meta-data acquisition components coexisting in STAR online domain.

  20. Online versus offline: The Web as a medium for response time data collection.

    Science.gov (United States)

    Chetverikov, Andrey; Upravitelev, Philipp

    2016-09-01

    The Internet provides a convenient environment for data collection in psychology. Modern Web programming languages, such as JavaScript or Flash (ActionScript), facilitate complex experiments without the necessity of experimenter presence. Yet there is always a question of how much noise is added due to the differences between the setups used by participants and whether it is compensated for by increased ecological validity and larger sample sizes. This is especially a problem for experiments that measure response times (RTs), because they are more sensitive (and hence more susceptible to noise) than, for example, choices per se. We used a simple visual search task with different set sizes to compare laboratory performance with Web performance. The results suggest that although the locations (means) of RT distributions are different, other distribution parameters are not. Furthermore, the effect of experiment setting does not depend on set size, suggesting that task difficulty is not important in the choice of a data collection method. We also collected an additional online sample to investigate the effects of hardware and software diversity on the accuracy of RT data. We found that the high diversity of browsers, operating systems, and CPU performance may have a detrimental effect, though it can partly be compensated for by increased sample sizes and trial numbers. In sum, the findings show that Web-based experiments are an acceptable source of RT data, comparable to a common keyboard-based setup in the laboratory.

  1. SurvExpress: an online biomarker validation tool and database for cancer gene expression data using survival analysis.

    Directory of Open Access Journals (Sweden)

    Raul Aguirre-Gamboa

    Full Text Available Validation of multi-gene biomarkers for clinical outcomes is one of the most important issues for cancer prognosis. An important source of information for virtual validation is the high number of available cancer datasets. Nevertheless, assessing the prognostic performance of a gene expression signature along datasets is a difficult task for Biologists and Physicians and also time-consuming for Statisticians and Bioinformaticians. Therefore, to facilitate performance comparisons and validations of survival biomarkers for cancer outcomes, we developed SurvExpress, a cancer-wide gene expression database with clinical outcomes and a web-based tool that provides survival analysis and risk assessment of cancer datasets. The main input of SurvExpress is only the biomarker gene list. We generated a cancer database collecting more than 20,000 samples and 130 datasets with censored clinical information covering tumors over 20 tissues. We implemented a web interface to perform biomarker validation and comparisons in this database, where a multivariate survival analysis can be accomplished in about one minute. We show the utility and simplicity of SurvExpress in two biomarker applications for breast and lung cancer. Compared to other tools, SurvExpress is the largest, most versatile, and quickest free tool available. SurvExpress web can be accessed in http://bioinformatica.mty.itesm.mx/SurvExpress (a tutorial is included. The website was implemented in JSP, JavaScript, MySQL, and R.

  2. The Comparative RNA Web (CRW Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

    Directory of Open Access Journals (Sweden)

    Müller Kirsten M

    2002-01-01

    Full Text Available Abstract Background Comparative analysis of RNA sequences is the basis for the detailed and accurate predictions of RNA structure and the determination of phylogenetic relationships for organisms that span the entire phylogenetic tree. Underlying these accomplishments are very large, well-organized, and processed collections of RNA sequences. This data, starting with the sequences organized into a database management system and aligned to reveal their higher-order structure, and patterns of conservation and variation for organisms that span the phylogenetic tree, has been collected and analyzed. This type of information can be fundamental for and have an influence on the study of phylogenetic relationships, RNA structure, and the melding of these two fields. Results We have prepared a large web site that disseminates our comparative sequence and structure models and data. The four major types of comparative information and systems available for the three ribosomal RNAs (5S, 16S, and 23S rRNA, transfer RNA (tRNA, and two of the catalytic intron RNAs (group I and group II are: (1 Current Comparative Structure Models; (2 Nucleotide Frequency and Conservation Information; (3 Sequence and Structure Data; and (4 Data Access Systems. Conclusions This online RNA sequence and structure information, the result of extensive analysis, interpretation, data collection, and computer program and web development, is accessible at our Comparative RNA Web (CRW Site http://www.rna.icmb.utexas.edu. In the future, more data and information will be added to these existing categories, new categories will be developed, and additional RNAs will be studied and presented at the CRW Site.

  3. OGEE v2: an update of the online gene essentiality database with special focus on differentially essential genes in human cancer cell lines

    Science.gov (United States)

    Chen, Wei-Hua; Lu, Guanting; Chen, Xiao; Zhao, Xing-Ming; Bork, Peer

    2017-01-01

    OGEE is an Online GEne Essentiality database. To enhance our understanding of the essentiality of genes, in OGEE we collected experimentally tested essential and non-essential genes, as well as associated gene properties known to contribute to gene essentiality. We focus on large-scale experiments, and complement our data with text-mining results. We organized tested genes into data sets according to their sources, and tagged those with variable essentiality statuses across data sets as conditionally essential genes, intending to highlight the complex interplay between gene functions and environments/experimental perturbations. Developments since the last public release include increased numbers of species and gene essentiality data sets, inclusion of non-coding essential sequences and genes with intermediate essentiality statuses. In addition, we included 16 essentiality data sets from cancer cell lines, corresponding to 9 human cancers; with OGEE, users can easily explore the shared and differentially essential genes within and between cancer types. These genes, especially those derived from cell lines that are similar to tumor samples, could reveal the oncogenic drivers, paralogous gene expression pattern and chromosomal structure of the corresponding cancer types, and can be further screened to identify targets for cancer therapy and/or new drug development. OGEE is freely available at http://ogee.medgenius.info. PMID:27799467

  4. OGEE v2: an update of the online gene essentiality database with special focus on differentially essential genes in human cancer cell lines.

    Science.gov (United States)

    Chen, Wei-Hua; Lu, Guanting; Chen, Xiao; Zhao, Xing-Ming; Bork, Peer

    2017-01-04

    OGEE is an Online GEne Essentiality database. To enhance our understanding of the essentiality of genes, in OGEE we collected experimentally tested essential and non-essential genes, as well as associated gene properties known to contribute to gene essentiality. We focus on large-scale experiments, and complement our data with text-mining results. We organized tested genes into data sets according to their sources, and tagged those with variable essentiality statuses across data sets as conditionally essential genes, intending to highlight the complex interplay between gene functions and environments/experimental perturbations. Developments since the last public release include increased numbers of species and gene essentiality data sets, inclusion of non-coding essential sequences and genes with intermediate essentiality statuses. In addition, we included 16 essentiality data sets from cancer cell lines, corresponding to 9 human cancers; with OGEE, users can easily explore the shared and differentially essential genes within and between cancer types. These genes, especially those derived from cell lines that are similar to tumor samples, could reveal the oncogenic drivers, paralogous gene expression pattern and chromosomal structure of the corresponding cancer types, and can be further screened to identify targets for cancer therapy and/or new drug development. OGEE is freely available at http://ogee.medgenius.info.

  5. A fusion algorithm for joins based on collections in Odra-Object Database for Rapid Application development

    Directory of Open Access Journals (Sweden)

    Laika Satish

    2011-07-01

    Full Text Available In this paper we present the functionality of a currently under development database programming methodology called ODRA (Object Database for Rapid Application development which works fully on the object oriented principles. The database programming language is called SBQL (Stack based query language. We discuss some concepts in ODRA for e.g. the working of ODRA, how ODRA runtime environment operates, the interoperability of ODRA with .net and java .A view of ODRA's working with web services and xml. Currently the stages under development in ODRA are query optimization. So we present the prior work that is done in ODRA related to Query optimization and we also present a new fusion algorithm of how ODRA can deal with joins based on collections like set, lists, and arrays for query optimization.

  6. Simulation and database society in Japanese role-playing game fandoms: Reading boys' love dōjinshi online

    Directory of Open Access Journals (Sweden)

    Lucy Hannah Glasspool

    2013-03-01

    Full Text Available Japanese video games have been characterized as typifying contemporary postmodernity in the form of simulacra, both as a media form and in terms of their extensive localization for international markets, which creates user fantasies of Japaneseness that are not linked to an authentic or original Japan. These simulations are reappropriated by fans to create new content, in this case boys' love dōjinshi, which are in turn disseminated and consumed in an English-speaking online context. Fantasy role-playing video games, which often privilege heteronormativity and binary gender norms in their goals, narratives, and aesthetics, are among the most popular texts reimagined in this way. This study considers the concepts of simulation and database societies through an examination of the ways in which artificial contours of Japaneseness are constructed in the role-playing game series Final Fantasy VII's boys' love dōjinshi fandoms, how far these fan texts develop possibilities for the deconstruction of heteronormativity, and how transnational digitized consumption methods facilitate the intersection of these phenomena.

  7. A personal digital assistant application (MobilDent) for dental fieldwork data collection, information management and database handling.

    Science.gov (United States)

    Forsell, M; Häggström, M; Johansson, O; Sjögren, P

    2008-11-08

    To develop a personal digital assistant (PDA) application for oral health assessment fieldwork, including back-office and database systems (MobilDent). System design, construction and implementation of PDA, back-office and database systems. System requirements for MobilDent were collected, analysed and translated into system functions. User interfaces were implemented and system architecture was outlined. MobilDent was based on a platform with. NET (Microsoft) components, using an SQL Server 2005 (Microsoft) for data storage with Windows Mobile (Microsoft) operating system. The PDA devices were Dell Axim. System functions and user interfaces were specified for MobilDent. User interfaces for PDA, back-office and database systems were based on. NET programming. The PDA user interface was based on Windows suitable to a PDA display, whereas the back-office interface was designed for a normal-sized computer screen. A synchronisation module (MS Active Sync, Microsoft) was used to enable download of field data from PDA to the database. MobilDent is a feasible application for oral health assessment fieldwork, and the oral health assessment database may prove a valuable source for care planning, educational and research purposes. Further development of the MobilDent system will include wireless connectivity with download-on-demand technology.

  8. Palaeontological collections at the Geological Museum, University of Copenhagen: from Cabinet of Curiosities to databases

    NARCIS (Netherlands)

    Harper, D.A.T.

    2004-01-01

    Geological collections were established in the University of Copenhagen during the early 1700s with the presentation of fossil, mineral and rock collections by Count A.G. Moltke, mainly assembled by Ole Worm (1588-1654) in his Museum Wormianum. Currently the palaeontological collections in the

  9. Palaeontological collections at the Geological Museum, University of Copenhagen: from Cabinet of Curiosities to databases

    NARCIS (Netherlands)

    Harper, D.A.T.

    2004-01-01

    Geological collections were established in the University of Copenhagen during the early 1700s with the presentation of fossil, mineral and rock collections by Count A.G. Moltke, mainly assembled by Ole Worm (1588-1654) in his Museum Wormianum. Currently the palaeontological collections in the Geolo

  10. Illegal captive lemurs in Madagascar: Comparing the use of online and in-person data collection methods.

    Science.gov (United States)

    Reuter, Kim E; Schaefer, Melissa S

    2016-02-29

    Although it is illegal to capture, sell, and trade lemurs, the live capture of lemurs in Madagascar is ongoing and may have impacted over 28,000 lemurs between 2010 and 2013. Only one study has examined this trade and did so using in-person interviews in northern Madagascar. The current study sought to expand this existing dataset and examine the comparability of online surveys to more traditional on-location data collection methods. In this study, we collected data through a web-based survey resulting in 302 sightings of 685 captive lemurs. We also collected data from 171 hotel and 43 restaurant websites and social media profiles. Survey submissions included sightings of 30 species from 10 genera, nearly twice as many species as identified via the in-person interviews. Lemur catta, Varecia variegata, and Eulemur fulvus were the most common species sighted in captivity. Captive lemurs were reported in 19 of Madagascar's 22 administrative regions and most were seen in urban areas near their habitat ranges. This represents a wider geographic distribution of captive lemurs than previously found through in-person interviews. The online survey results were broadly similar to those of the in-person surveys though greater in species and geographic diversity demonstrating advantages to the use of online surveys. The online research methods were low in cost (USD $100) compared to on-location data collection (USD $12,000). Identified disadvantages included sample bias; most of the respondents to the online survey were researchers and many captive sightings were near study sites. The results illustrate the benefits of incorporating a social science approach using online surveys as a complement to traditional fieldwork. Am. J. Primatol. © 2016 Wiley Periodicals, Inc.

  11. Definition of key parameters for constructing an online reference micrographs collection of processed animal particles in feed

    Directory of Open Access Journals (Sweden)

    Belinchon Crespo, C.

    2012-01-01

    Full Text Available The European Union Reference Laboratory for the detection of animal proteins in feedingstuffs (EURL-AP has developed an online micrographs collection supporting its network activities within the European Union for the detection of prohibited animal by-products in feed. So far, the only official method for detecting these by-products is light microscopy, which is highly dependent on the skills of a microscopist because it relies on particle recognition. In order to help the microscopist network to achieve high proficiency levels, it was necessary to create an online reference tool based on micrographs and accessible via an Intranet platform. Members of the National Reference Laboratories for animal proteins in feedingstuffs (NRL-AP and the International Association for Feedingstuff Analysis – Section Feedingstuff Microscopy (IAG have access to this micrographs collection. This paper describes how the online collection was created and what conditions had to be taken into account in creating such a tool. It also describes how information are periodically updated and managed within the context of the large amount of information included in each micrograph. The need for a robust back-office system as the foundation for all the research activities in this project is also covered, and the evaluation of the use of the online collection is discussed.

  12. 76 FR 16850 - 60-Day Notice of Proposed Information Collection: Agency Form DS-4127, NEA/PI Online Performance...

    Science.gov (United States)

    2011-03-25

    ... System (PRS), OMB Control Number 1405-0183. ACTION: Notice of request for public comments. SUMMARY: The... of 1995. Title of Information Collection: NEA/PI Online Performance Reporting System (PRS). OMB... in a consistent and standardized manner. The MEPI Performance Reporting System (PRS) enables...

  13. A sapphire tube atomizer for on-line atomization and in situ collection of bismuthine for atomic absorption spectrometry

    OpenAIRE

    Musil, S. (Stanislav); Dědina, J. (Jiří)

    2013-01-01

    Sapphire was tested as a new material for volatile species atomizers and bismuthine was chosen as a convenient model for volatile species. Its performance was compared with a quartz atomizer in both modes of operation - on-line atomization versus in situ collection.

  14. Association between volume and momentum of online searches and real-world collective unrest

    Science.gov (United States)

    Qi, Hong; Manrique, Pedro; Johnson, Daniela; Restrepo, Elvira; Johnson, Neil F.

    A fundamental idea from physics is that macroscopic transitions can occur as a result of an escalation in the correlated activity of a many-body system's constituent particles. Here we apply this idea in an interdisciplinary setting, whereby the particles are individuals, their correlated activity involves online search activity surrounding the topics of social unrest, and the macroscopic phenomenon being measured are real-world protests. Our empirical study covers countries in Latin America during 2011-2014 using datasets assembled from multiple sources by subject matter experts. We find specifically that the volume and momentum of searches on Google Trends surrounding mass protest language, can detect - and may even pre-empt - the macroscopic on-street activity. Not only can this simple open-source solution prove an invaluable aid for monitoring civil order, our study serves to strengthen the increasing literature in the physics community aimed at understanding the collective dynamics of interacting populations of living objects across the life sciences.

  15. Development of a Smartphone App for a Genetics Website: The Amyotrophic Lateral Sclerosis Online Genetics Database (ALSoD).

    Science.gov (United States)

    Abel, Olubunmi; Shatunov, Aleksey; Jones, Ashley R; Andersen, Peter M; Powell, John F; Al-Chalabi, Ammar

    2013-09-04

    The ALS Online Genetics Database (ALSoD) website holds mutation, geographical, and phenotype data on genes implicated in amyotrophic lateral sclerosis (ALS) and links to bioinformatics resources, publications, and tools for analysis. On average, there are 300 unique visits per day, suggesting a high demand from the research community. To enable wider access, we developed a mobile-friendly version of the website and a smartphone app. We sought to compare data traffic before and after implementation of a mobile version of the website to assess utility. We identified the most frequently viewed pages using Google Analytics and our in-house analytic monitoring. For these, we optimized the content layout of the screen, reduced image sizes, and summarized available information. We used the Microsoft .NET framework mobile detection property (HttpRequest.IsMobileDevice in the Request.Browser object in conjunction with HttpRequest.UserAgent), which returns a true value if the browser is a recognized mobile device. For app development, we used the Eclipse integrated development environment with Android plug-ins. We wrapped the mobile website version with the WebView object in Android. Simulators were downloaded to test and debug the applications. The website automatically detects access from a mobile phone and redirects pages to fit the smaller screen. Because the amount of data stored on ALSoD is very large, the available information for display using smartphone access is deliberately restricted to improve usability. Visits to the website increased from 2231 to 2820, yielding a 26% increase from the pre-mobile to post-mobile period and an increase from 103 to 340 visits (230%) using mobile devices (including tablets). The smartphone app is currently available on BlackBerry and Android devices and will be available shortly on iOS as well. Further development of the ALSoD website has allowed access through smartphones and tablets, either through the website or directly through

  16. Development of database on the distribution coefficient. 1. Collection of the distribution coefficient data

    Energy Technology Data Exchange (ETDEWEB)

    Takebe, Shinichi; Abe, Masayoshi [Japan Atomic Energy Research Inst., Tokai, Ibaraki (Japan). Tokai Research Establishment

    2001-03-01

    The distribution coefficient is very important parameter for environmental impact assessment on the disposal of radioactive waste arising from research institutes. The literature survey in the country was mainly carried out for the purpose of selecting the reasonable distribution coefficient value on the utilization of this value in the safety evaluation. This report was arranged much informations on the distribution coefficient for inputting to the database for each literature, and was summarized as a literature information data on the distribution coefficient. (author)

  17. Gratifications, collective self-esteem, online emotional openness, and traitlike communication apprehension as predictors of Facebook uses.

    Science.gov (United States)

    Zhang, Yin; Tang, Leo Shing-Tung; Leung, Louis

    2011-12-01

    This study explores whether and how gratifications and psychological traits impact people's Facebook use. First, a factor analysis of an online survey (N= 437) outlined a unique set of gratifications obtained from the use of Facebook. Six aspects of gratifications (i.e., social surveillance, entertainment, recognition, emotional support, network extension, and maintenance) were identified. Results from regression analyses showed that psychological traits (i.e., collective self-esteem, online emotional openness, and traitlike communication apprehension) were strong predictors of most Facebook gratifications. Additionally, gratifications and, to a lesser extent, psychological traits significantly predicted Facebook usage, both in perceived importance and different indicators in the level of Facebook use.

  18. EVALUASI PEMANFAATAN JURNAL DALAM DATABASE "EBSCO BIOMEDICAL REFERENCE COLLECTION" DI UNIT PERPUSTAKAAN DAN INFORMATIKA KEDOKTERAN (UPIK FAKULTAS KEDOKTERAN UGM YOGYAKARTA

    Directory of Open Access Journals (Sweden)

    Eka Wardhani S.

    2015-12-01

    Full Text Available Evaluasi terhadap pemanfaatan koleksi sangat diperlukan untuk mengetahui seberapa besar koleksi tersebut diakses dan dimanfaatkan oleh pengguna. Ebsco Biomedical Reference Collection (Ebsco BRC merupakan salah satu database jurnal yang berparadigma akses. Evaluasi pemanfaatan jurnal dalam database Ebsco BRC merupakan penelitian tentang pemanfaatan koleksi perpustakaan yang dilakukan di UPIK (Unit Perpustakaan dan Informatika Kedokteran Fakultas Kedokteran Universitas Gadjah Mada Yogyakarta. Penelitian ini bertujuan untuk mengetahui tingkat keterpakaian dan pemanfaatan jumal oleh sivitas akademika di FK UGM. Evaluasi dilakukan dengan metode deskriptif dengan pendekatan data kuantitatif dan kualitatif. . Instrumen yang digunakan dalam evaluasi adalah kuesioner dan usage statistics report. Hasil Penelitian ini menunjukkan bahwa tingkat keterpakaian jurnal berdasarkan judul yang ada tinggi (97,96%, akan tetapi tingkat pengaksesannya belum dilakukan secara maksimal. Rata-rata pengaksesan jurnal setiap harinya 25%. Dari data usage statistics report dapat diketahui sebanyak 12 judul jumal yang diakses lebih dari 1000 kali yang dinyatakan sebagai jumal yang paling sering diakses oleh pengguna. Saran peneliti berdasarkan hasil penelitian yang diperoleh adalah bahwa kegiatan melanggan koleksi database Ebsco dapat terus dilakukan , akan tetapi UPIK harus berusaha meningkatkan sosialisasi koleksi, aksesibilitas, fasilitas, dan bimbingan bagi pengguna dalam melakukan penelusuran dalam database tersebut agar dapat dimanfaatkan secara maksimal. Kata Kunci: Evaluasi Koleksi, Ebsco

  19. On-line database of voltammetric data of immobilized particles for identifying pigments and minerals in archaeometry, conservation and restoration (ELCHER database)

    Energy Technology Data Exchange (ETDEWEB)

    Doménech-Carbó, Antonio, E-mail: antonio.domenech@uv.es [Departament de Química Analítica, Universitat de València, Dr. Moliner, 50, 46100, Burjassot, València (Spain); Doménech-Carbó, María Teresa, E-mail: tdomenec@crbc.upv.es [Institut de Restauració del Patrimoni, Universitat Politècnica de València, Camí de Vera 14, 46022, València (Spain); Valle-Algarra, Francisco Manuel; Gimeno-Adelantado, José Vicente [Departament de Química Analítica, Universitat de València, Dr. Moliner, 50, 46100, Burjassot, València (Spain); Osete-Cortina, Laura [Institut de Restauració del Patrimoni, Universitat Politècnica de València, Camí de Vera 14, 46022, València (Spain); Bosch-Reig, Francisco [Departament de Química Analítica, Universitat de València, Dr. Moliner, 50, 46100, Burjassot, València (Spain)

    2016-07-13

    A web-based database of voltammograms is presented for characterizing artists' pigments and corrosion products of ceramic, stone and metal objects by means of the voltammetry of immobilized particles methodology. Description of the website and the database is provided. Voltammograms are, in most cases, accompanied by scanning electron microphotographs, X-ray spectra, infrared spectra acquired in attenuated total reflectance Fourier transform infrared spectroscopy mode (ATR-FTIR) and diffuse reflectance spectra in the UV–Vis-region. For illustrating the usefulness of the database two case studies involving identification of pigments and a case study describing deterioration of an archaeological metallic object are presented. - Highlights: • A web-based database of voltammograms is presented. • The voltammetry of immobilized particles is used. • Artist's pigments and corrosion products of ceramic, stone and metal objects are included. • Examples of application on works of art are discussed.

  20. Using online database for landslide susceptibility assessment with an example from the Veneto Region (north-eastern Italy).

    Science.gov (United States)

    Floris, Mario; Squarzoni, Cristina; Zorzi, Luca; D'Alpaos, Andrea; Iafelice, Maria

    2010-05-01

    particular, the Trento and Bolzano Provinces Geobrowsers (http://www.provincia.bz.it; http://www.territorio.provincia.tn.it) provide a large availability of data respect to the other regional and interregional WebGIS, which generally allow only the download of topographic data. Recently, the Italian Institute for Environmental Protection and Research, ISPRA (Istituto Superiore per la Protezione e la ricerca Ambientale), makes available and free usable the Italian Inventory of Landslides (IFFI Project). The inventory contains information derived from the census of all the instability phenomena in Italy, offering a base-cognitive instrument for the landslide hazard evaluation. For the landslide hazard assessment it is essential to evaluate the real effectiveness of the available data. Hence, we test the effectiveness of the web databases to evaluate the landslides susceptibility in the Euganean Hill Regional Park (185.5 km2), located at SE of Padua (Veneto Region, Italy). We used data available from three online spatial databases: Veneto Region Cartographic Portal (http://www.regione.veneto.it), for vector terrain data at 1:5000 scale; the IFFI archive (http://www.sinanet.apat.it), for information concerning landslides; and the National Cartographic Portal of the Italian Ministry of Environment (http://www.pcn.minambiente.it), for the multi-temporal orthophotos. The landslide susceptibility was evaluated using a simple probabilistic analysis considering the relationships between landslides and DEM-derived factors, such as slope, curvature and aspect. For the validation of the analysis, we made a spatial test by subdividing the study area in two sectors: training area and test area. The obtained results show that the actual no-completeness of online available spatial databases related to the Veneto Region allows only regional and medium scale (>1:25,000) susceptibility analysis. Data about lithology, land use, groundwater and others relevant factors are absent. In addition, the

  1. The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification.

    Science.gov (United States)

    Reddy, T B K; Thomas, Alex D; Stamatis, Dimitri; Bertsch, Jon; Isbandi, Michelle; Jansson, Jakob; Mallajosyula, Jyothi; Pagani, Ioanna; Lobos, Elizabeth A; Kyrpides, Nikos C

    2015-01-01

    The Genomes OnLine Database (GOLD; http://www.genomesonline.org) is a comprehensive online resource to catalog and monitor genetic studies worldwide. GOLD provides up-to-date status on complete and ongoing sequencing projects along with a broad array of curated metadata. Here we report version 5 (v.5) of the database. The newly designed database schema and web user interface supports several new features including the implementation of a four level (meta)genome project classification system and a simplified intuitive web interface to access reports and launch search tools. The database currently hosts information for about 19,200 studies, 56,000 Biosamples, 56,000 sequencing projects and 39,400 analysis projects. More than just a catalog of worldwide genome projects, GOLD is a manually curated, quality-controlled metadata warehouse. The problems encountered in integrating disparate and varying quality data into GOLD are briefly highlighted. GOLD fully supports and follows the Genomic Standards Consortium (GSC) Minimum Information standards.

  2. The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification

    Science.gov (United States)

    Reddy, T.B.K.; Thomas, Alex D.; Stamatis, Dimitri; Bertsch, Jon; Isbandi, Michelle; Jansson, Jakob; Mallajosyula, Jyothi; Pagani, Ioanna; Lobos, Elizabeth A.; Kyrpides, Nikos C.

    2015-01-01

    The Genomes OnLine Database (GOLD; http://www.genomesonline.org) is a comprehensive online resource to catalog and monitor genetic studies worldwide. GOLD provides up-to-date status on complete and ongoing sequencing projects along with a broad array of curated metadata. Here we report version 5 (v.5) of the database. The newly designed database schema and web user interface supports several new features including the implementation of a four level (meta)genome project classification system and a simplified intuitive web interface to access reports and launch search tools. The database currently hosts information for about 19 200 studies, 56 000 Biosamples, 56 000 sequencing projects and 39 400 analysis projects. More than just a catalog of worldwide genome projects, GOLD is a manually curated, quality-controlled metadata warehouse. The problems encountered in integrating disparate and varying quality data into GOLD are briefly highlighted. GOLD fully supports and follows the Genomic Standards Consortium (GSC) Minimum Information standards. PMID:25348402

  3. The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification

    Energy Technology Data Exchange (ETDEWEB)

    Reddy, Tatiparthi B. K. [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Thomas, Alex D. [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Stamatis, Dimitri [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Bertsch, Jon [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Isbandi, Michelle [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Jansson, Jakob [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Mallajosyula, Jyothi [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Pagani, Ioanna [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Lobos, Elizabeth A. [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Kyrpides, Nikos C. [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia)

    2014-10-27

    The Genomes OnLine Database (GOLD; http://www.genomesonline.org) is a comprehensive online resource to catalog and monitor genetic studies worldwide. GOLD provides up-to-date status on complete and ongoing sequencing projects along with a broad array of curated metadata. Within this paper, we report version 5 (v.5) of the database. The newly designed database schema and web user interface supports several new features including the implementation of a four level (meta)genome project classification system and a simplified intuitive web interface to access reports and launch search tools. The database currently hosts information for about 19 200 studies, 56 000 Biosamples, 56 000 sequencing projects and 39 400 analysis projects. More than just a catalog of worldwide genome projects, GOLD is a manually curated, quality-controlled metadata warehouse. The problems encountered in integrating disparate and varying quality data into GOLD are briefly highlighted. Lastly, GOLD fully supports and follows the Genomic Standards Consortium (GSC) Minimum Information standards.

  4. Gifted Education Database (GED: Information Management and Online Teacher Recommendation System / Üstün Yetenekliler Eğitimi Veri Bankası: Bilgi Yönetimi ve Online Öğretmen Değerlendirme Sistemi

    Directory of Open Access Journals (Sweden)

    Yewon Suh

    2016-12-01

    Full Text Available The purpose of the study is to explore the content and significance of the Gifted Education Database (GED, a Korean information service system for gifted education. The GED functions as: 1 an information management system and 2 a teacher recommendation system. The information management system collects and provides data in terms of statistics on institutions, teachers, and students, teaching and learning materials, and notifications. The teacher recommendation system helps teachers to recommend students through an on-line system. It also assists in the student selection process by providing users a step-by-step interface specifically designed for each stage. Overall, as a comprehensive collective information system in gifted education, the GED supports policy making on providing appropriate educational experiences for the outstanding individuals, particularly those with disadvantaged socio-cultural background by providing reliable data at the national level. At the user level, it increases data accessibility and provides customized services for people concerned with gifted education. As a result, the GED connects information and people and is a driving force for national growth. Key Words: gifted education, database for gifted, Korean Information System Öz Bu çalışmanın amacı Kore’de üstün yetenekliler eğitimi bilgi servisi olan Üstün Yetenekliler Veri Tabanını (GED açıklayarak önemini ortaya koymaktır. GED’in iki işlevi vardır; 1 bilgi yönetim sistemi ve 2 öğretmen öneri sistemi. Bilgi yönetim sistemi olarak kurumlar, öğretmenler, öğrenciler, öğrenme ve öğretme materyalleri hakkında bilgiler ve duyurular toplanarak istatistikler halinde sunulur. Öğ- retmen öneri sistemi, online bir sistemle öğ- retmenlerin öğrencileri aday göstermelerine yardımcı olur. Ayrıca sistem, öğrenci seçme sürecinde kullanıcılara her aşama için özel olarak tasarlanmış bir ara-yüz ile adım adım yard

  5. 基于MySQL数据库的在线选课系统%Online Course System Based on MySQL Database

    Institute of Scientific and Technical Information of China (English)

    贺蕴彬

    2014-01-01

    文章探讨了基于MySQL数据库的在线选课系统的设计。通过分析基于MySQL数据库的在线选课系统的实际需求,阐述了系统的设计思想。在探讨选课系统总体设计的基础上,对数据库的设计原则进行了深入分析,指出了规范数据库、规范命名的原则,对数据库设计的重要考虑因素做了概括。对基本的数据表的构成进行了列举。最后,通过实例展示了选课系统中对数据库操作。%This article explores the online course system based on MySQL database design. By analyzing the MySQL database based on the actual needs of the online course system, describes the design concept of the system. Articles explore the elective sys-tem design, based on the principles of database design conducted in-depth analysis, pointing out the specification database, stan-dardized naming principle, an important consideration in the design of the database to do a summary. Article constitute the basic data tables were enumerated. Finally, the article shows by example elective system for database operations.

  6. California dragonfly and damselfly (Odonata) database: temporal and spatial distribution of species records collected over the past century.

    Science.gov (United States)

    Ball-Damerow, Joan E; Oboyski, Peter T; Resh, Vincent H

    2015-01-01

    The recently completed Odonata database for California consists of specimen records from the major entomology collections of the state, large Odonata collections outside of the state, previous literature, historical and recent field surveys, and from enthusiast group observations. The database includes 32,025 total records and 19,000 unique records for 106 species of dragonflies and damselflies, with records spanning 1879-2013. Records have been geographically referenced using the point-radius method to assign coordinates and an uncertainty radius to specimen locations. In addition to describing techniques used in data acquisition, georeferencing, and quality control, we present assessments of the temporal, spatial, and taxonomic distribution of records. We use this information to identify biases in the data, and to determine changes in species prevalence, latitudinal ranges, and elevation ranges when comparing records before 1976 and after 1979. The average latitude of where records occurred increased by 78 km over these time periods. While average elevation did not change significantly, the average minimum elevation across species declined by 108 m. Odonata distribution may be generally shifting northwards as temperature warms and to lower minimum elevations in response to increased summer water availability in low-elevation agricultural regions. The unexpected decline in elevation may also be partially the result of bias in recent collections towards centers of human population, which tend to occur at lower elevations. This study emphasizes the need to address temporal, spatial, and taxonomic biases in museum and observational records in order to produce reliable conclusions from such data.

  7. GERMINATE. A Generic Database for Integrating Genotypic and Phenotypic Information for Plant Genetic Resource Collections

    NARCIS (Netherlands)

    Lee, J.M.; Davenport, G.F.; Marshall, D.; Ellis, T.H.; Ambrose, M.J.; Dicks, J.; Hintum, van T.J.L.; Flavell, A.J.

    2005-01-01

    The extensive germplasm resource collections that are now available for major crop plants and their wild relatives will increasingly provide valuable biological and bioinformatics resources for plant physiologists and geneticists to dissect the molecular basis of key traits and to develop highly

  8. Archival policies and collections database for the Woods Hole Science Center's marine sediment samples

    Science.gov (United States)

    Buczkowski, Brian J.; Kelsey, Sarah A.

    2007-01-01

    The Woods Hole Science Center of the U.S. Geological Survey (USGS) has been an active member of the Woods Hole research community, Woods Hole, Massachusetts, for over 40 years. In that time there have been many projects that involved the collection of sediment samples conducted by USGS scientists and technicians for the research and study of seabed environments and processes. These samples were collected at sea or near shore and then brought back to the Woods Hole Science Center (WHSC) for analysis. While at the center, samples are stored in ambient temperature, refrigerated and freezing conditions ranging from +2º Celsius to -18º Celsius, depending on the best mode of preparation for the study being conducted or the duration of storage planned for the samples. Recently, storage methods and available storage space have become a major concern at the WHSC. The core and sediment archive program described herein has been initiated to set standards for the management, methods, and duration of sample storage. A need has arisen to maintain organizational consistency and define storage protocol. This handbook serves as a reference and guide to all parties interested in using and accessing the WHSC's sample archive and also defines all the steps necessary to construct and maintain an organized collection of geological samples. It answers many questions as to the way in which the archive functions.

  9. The SDH mutation database: an online resource for succinate dehydrogenase sequence variants involved in pheochromocytoma, paraganglioma and mitochondrial complex II deficiency

    Directory of Open Access Journals (Sweden)

    Devilee Peter

    2005-11-01

    Full Text Available Abstract Background The SDHA, SDHB, SDHC and SDHD genes encode the subunits of succinate dehydrogenase (succinate: ubiquinone oxidoreductase, a component of both the Krebs cycle and the mitochondrial respiratory chain. SDHA, a flavoprotein and SDHB, an iron-sulfur protein together constitute the catalytic domain, while SDHC and SDHD encode membrane anchors that allow the complex to participate in the respiratory chain as complex II. Germline mutations of SDHD and SDHB are a major cause of the hereditary forms of the tumors paraganglioma and pheochromocytoma. The largest subunit, SDHA, is mutated in patients with Leigh syndrome and late-onset optic atrophy, but has not as yet been identified as a factor in hereditary cancer. Description The SDH mutation database is based on the recently described Leiden Open (source Variation Database (LOVD system. The variants currently described in the database were extracted from the published literature and in some cases annotated to conform to current mutation nomenclature. Researchers can also directly submit new sequence variants online. Since the identification of SDHD, SDHC, and SDHB as classic tumor suppressor genes in 2000 and 2001, studies from research groups around the world have identified a total of 120 variants. Here we introduce all reported paraganglioma and pheochromocytoma related sequence variations in these genes, in addition to all reported mutations of SDHA. The database is now accessible online. Conclusion The SDH mutation database offers a valuable tool and resource for clinicians involved in the treatment of patients with paraganglioma-pheochromocytoma, clinical geneticists needing an overview of current knowledge, and geneticists and other researchers needing a solid foundation for further exploration of both these tumor syndromes and SDHA-related phenotypes.

  10. Collection of scribe databases compiled in response to the Deepwater Horizon oil spill incident in the Gulf of Mexico from 04/23/2010 to 11/08/2011 (NODC Accession 0086261)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Scribe Database Collection includes 14 databases containing data from the Deepwater Horizon (DWH) Oil Spill Event Response Phase. These databases are the work of...

  11. E-SovTox: An online database of the main publicly-available sources of toxicity data concerning REACH-relevant chemicals published in the Russian language.

    Science.gov (United States)

    Sihtmäe, Mariliis; Blinova, Irina; Aruoja, Villem; Dubourguier, Henri-Charles; Legrand, Nicolas; Kahru, Anne

    2010-08-01

    A new open-access online database, E-SovTox, is presented. E-SovTox provides toxicological data for substances relevant to the EU Registration, Evaluation, Authorisation and Restriction of Chemicals (REACH) system, from publicly-available Russian language data sources. The database contains information selected mainly from scientific journals published during the Soviet Union era. The main information source for this database - the journal, Gigiena Truda i Professional'nye Zabolevania [Industrial Hygiene and Occupational Diseases], published between 1957 and 1992 - features acute, but also chronic, toxicity data for numerous industrial chemicals, e.g. for rats, mice, guinea-pigs and rabbits. The main goal of the abovementioned toxicity studies was to derive the maximum allowable concentration limits for industrial chemicals in the occupational health settings of the former Soviet Union. Thus, articles featured in the database include mostly data on LD50 values, skin and eye irritation, skin sensitisation and cumulative properties. Currently, the E-SovTox database contains toxicity data selected from more than 500 papers covering more than 600 chemicals. The user is provided with the main toxicity information, as well as abstracts of these papers in Russian and in English (given as provided in the original publication). The search engine allows cross-searching of the database by the name or CAS number of the compound, and the author of the paper. The E-SovTox database can be used as a decision-support tool by researchers and regulators for the hazard assessment of chemical substances.

  12. Prisons and Correctional Facilities, Located during MicroData field address collection 2004-2006. Kept in Spillman database for retrieval., Published in 2004, Vilas County Government.

    Data.gov (United States)

    NSGIC Local Govt | GIS Inventory — Prisons and Correctional Facilities dataset current as of 2004. Located during MicroData field address collection 2004-2006. Kept in Spillman database for retrieval..

  13. Online data collection with special populations over the World Wide Web.

    Science.gov (United States)

    Marcell, M M; Falls, A L

    2001-10-01

    The quick ascendance of the World Wide Web as the dominant vehicle for internet communication has recently made experimentation in a multimedia environment feasible on the Internet. Although web sites containing online psychology demonstrations and experiments for non-handicapped individuals have appeared in recent years (especially in the areas of cognitive and social psychology), there appear to have been few attempts to conduct online experimentation with special populations. We recently completed two online pilot studies of families with Down syndrome or Williams syndrome members: a) A survey that asks (via Likert rating scales, adjective checklists, multiple-choice style questions, and text-entry boxes) about family background, computer use, and temperament of the special needs family member; and b) An experiment (completed by an individual with special needs) that includes auditory and visual digit span tasks and a memory-for-orientation task in which responses are entered via mouse clicks. Recruiting began with e-mail announcements to representative Down syndrome and Williams syndrome discussion groups, listserves, and bulletin boards, and submission of the project's URL (http://www.cofc.edu/~marcellm/testaw.htm) and key indexing terms to selected search engines. This paper reviews technical aspects of developing the online programmes as well as the strengths and weaknesses of online vs. traditional laboratory-based research in relation to issues such as experimental control, delivery of instructions, experimenter bias, participant recruitment, sample heterogeneity, generalization, attrition, privacy, financial costs, data integrity, and ethics. We conclude by offering our thoughts on two ways of implementing online experimentation with special populations: a) Using a remote parent 'helper' as a proxy to work with the target individual; and b) Collaborating with professional colleagues in Web-based projects conducted in traditional laboratory settings.

  14. California dragonfly and damselfly (Odonata database: temporal and spatial distribution of species records collected over the past century

    Directory of Open Access Journals (Sweden)

    Joan E. Ball-Damerow

    2015-02-01

    Full Text Available The recently completed Odonata database for California consists of specimen records from the major entomology collections of the state, large Odonata collections outside of the state, previous literature, historical and recent field surveys, and from enthusiast group observations. The database includes 32,025 total records and 19,000 unique records for 106 species of dragonflies and damselflies, with records spanning 1879–2013. Records have been geographically referenced using the point-radius method to assign coordinates and an uncertainty radius to specimen locations. In addition to describing techniques used in data acquisition, georeferencing, and quality control, we present assessments of the temporal, spatial, and taxonomic distribution of records. We use this information to identify biases in the data, and to determine changes in species prevalence, latitudinal ranges, and elevation ranges when comparing records before 1976 and after 1979. The average latitude of where records occurred increased by 78 km over these time periods. While average elevation did not change significantly, the average minimum elevation across species declined by 108 m. Odonata distribution may be generally shifting northwards as temperature warms and to lower minimum elevations in response to increased summer water availability in low-elevation agricultural regions. The unexpected decline in elevation may also be partially the result of bias in recent collections towards centers of human population, which tend to occur at lower elevations. This study emphasizes the need to address temporal, spatial, and taxonomic biases in museum and observational records in order to produce reliable conclusions from such data.

  15. A Collection of Economic and Social Data from Glitch, a Massively Multiplayer Online Game

    Science.gov (United States)

    2013-03-05

    and R. J. Moore, “The life and death of online gaming communities: a look at guilds in world of warcraft ,” in CHI ’07: Proceedings of the SIGCHI...world of warcraft ,” in Proceedings of the 2006 20th anniversary conference on Computer supported cooperative work, Banff, Alberta, Canada, 2006, pp

  16. Setting-up a European Cross-Provider Data Collection on Open Online Courses

    NARCIS (Netherlands)

    Kalz, Marco; Kreijns, Karel; Walhout, Jaap; Castaño-Munoz, Jonatan; Espasa, Anna; Tovar, Edmundo

    2015-01-01

    While MOOCS have emerged as a new form of open online education around the world, research is still lagging behind to come up with a sound theoretical basis that can cover the impact of socio- economic background variables, ICT competences, prior experiences and lifelong learning profile, variance i

  17. eBooked! integrating free online book sites into your library collection

    CERN Document Server

    Bandy, H

    2013-01-01

    A comprehensive look at today's online book sites, such as Google Books and HathiTrust, that gives you the necessary knowledge, skills, and resources to get up to speed on these amazing digital resources and use them effectively in the library setting.

  18. A Study to Examine Differences Between In Person and Online Survey Data Collection Methodologies.

    Directory of Open Access Journals (Sweden)

    ROBERT CASE,

    2009-01-01

    Full Text Available The purpose of this study was to examine differences between the results of an in person or face-to-face direct spending survey and a post-event online direct spending survey. Participants in a large annual marathon held in the Mid-Atlantic Region of the United States were used as subjects for the study. The research methodology selected for this study included an in person survey instrument administered to out-of-town marathon participants prior to the start of the event during the race number and race timing chip pick-up period. The same survey instrument was administered online four days after the conclusion of the marathon to the same group of out-of-town marathon participants who did not previously respond to the in person survey. Analysis of data and results revealed that average direct spending for the online respondents was consistently and significantly higher than spending for the in person respondents on direct spending questions. Spending on lodging for both groups showed no significant differences. It was recommended that the use of online survey methods be considered when conducting direct spending studies for participant oriented sporting events when adequate e-mail addresses are available and the potential respondents have a certain level of computer literacy.

  19. Exposing USGS sample collections for broader discovery and access: collaboration between ScienceBase, IEDA:SESAR, and Paleobiology Database

    Science.gov (United States)

    Hsu, L.; Bristol, S.; Lehnert, K. A.; Arko, R. A.; Peters, S. E.; Uhen, M. D.; Song, L.

    2014-12-01

    The U.S. Geological Survey (USGS) is an exemplar of the need for improved cyberinfrastructure for its vast holdings of invaluable physical geoscience data. Millions of discrete paleobiological and geological specimens lie in USGS warehouses and at the Smithsonian Institution. These specimens serve as the basis for many geologic maps and geochemical databases, and are a potential treasure trove of new scientific knowledge. The extent of this treasure is virtually unknown and inaccessible outside a small group of paleogeoscientists and geochemists. A team from the USGS, the Integrated Earth Data Applications (IEDA) facility, and the Paleobiology Database (PBDB) are working to expose information on paleontological and geochemical specimens for discovery by scientists and citizens. This project uses existing infrastructure of the System for Earth Sample Registration (SESAR) and PBDB, which already contains much of the fundamental data schemas that are necessary to accommodate USGS records. The project is also developing a new Linked Data interface for the USGS National Geochemical Database (NGDB). The International Geo Sample Number (IGSN) is the identifier that links samples between all systems. For paleontological specimens, SESAR and PBDB will be the primary repositories for USGS records, with a data syncing process to archive records within the USGS ScienceBase system. The process began with mapping the metadata fields necessary for USGS collections to the existing SESAR and PBDB data structures, while aligning them with the Observations & Measurements and Darwin Core standards. New functionality needed in SESAR included links to a USGS locality registry, fossil classifications, a spatial qualifier attribution for samples with sensitive locations, and acknowledgement of data and metadata licensing. The team is developing a harvesting mechanism to periodically transfer USGS records from within PBDB and SESAR to ScienceBase. For the NGDB, the samples are being

  20. Variations in data collection methods between national databases affect study results: a comparison of the nationwide inpatient sample and national surgical quality improvement program databases for lumbar spine fusion procedures.

    Science.gov (United States)

    Bohl, Daniel D; Russo, Glenn S; Basques, Bryce A; Golinvaux, Nicholas S; Fu, Michael C; Long, William D; Grauer, Jonathan N

    2014-12-03

    There has been an increasing use of national databases to conduct orthopaedic research. Questions regarding the validity and consistency of these studies have not been fully addressed. The purpose of this study was to test for similarity in reported measures between two national databases commonly used for orthopaedic research. A retrospective cohort study of patients undergoing lumbar spinal fusion procedures during 2009 to 2011 was performed in two national databases: the Nationwide Inpatient Sample and the National Surgical Quality Improvement Program. Demographic characteristics, comorbidities, and inpatient adverse events were directly compared between databases. The total numbers of patients included were 144,098 from the Nationwide Inpatient Sample and 8434 from the National Surgical Quality Improvement Program. There were only small differences in demographic characteristics between the two databases. There were large differences between databases in the rates at which specific comorbidities were documented. Non-morbid obesity was documented at rates of 9.33% in the Nationwide Inpatient Sample and 36.93% in the National Surgical Quality Improvement Program (relative risk, 0.25; p databases in the rates at which specific inpatient adverse events were documented. Sepsis was documented at rates of 0.38% in the Nationwide Inpatient Sample and 0.81% in the National Surgical Quality Improvement Program (relative risk, 0.47; p database studies become more prevalent in orthopaedic surgery, authors, reviewers, and readers should view these studies with caution. This study shows that two commonly used databases can identify demographically similar patients undergoing a common orthopaedic procedure; however, the databases document markedly different rates of comorbidities and inpatient adverse events. The differences are likely the result of the very different mechanisms through which the databases collect their comorbidity and adverse event data. Findings highlight

  1. Freshwater Biological Traits Database (Final Report)

    Science.gov (United States)

    EPA announced the release of the final report, Freshwater Biological Traits Database. This report discusses the development of a database of freshwater biological traits. The database combines several existing traits databases into an online format. The database is also...

  2. Comparing Safari Tech Books Online and Books24x7 E-Book Collections: A Case Study from the University of British Columbia Library

    Science.gov (United States)

    Barsky, Eugene; Schattman, Lisa; Greenwood, Aleteia

    2009-01-01

    Most academic libraries are seeking to provide electronic access to the very dynamic and changing field of technology related material. "Safari Tech Books Online" and "Books24x7" are the major e-book collections in this area. We compared the "Safari Tech Books Online" and "Books24x7" e-book packages as to their usefulness for the University of…

  3. Ethical and legal issues involved in the pro-active collection of personal information with the aim of reducing online disclosure

    CSIR Research Space (South Africa)

    Botha, J

    2016-09-01

    Full Text Available aims to highlight some of the major ethical and legal issues when pro-actively collecting personal information, through a South African case study, to assist in reducing the amounts of personal information being disclosed online....

  4. Trust into Collective Privacy? The Role of Subjective Theories for Self-Disclosure in Online Communication

    Directory of Open Access Journals (Sweden)

    Ricarda Moll

    2014-12-01

    Full Text Available In order to build and maintain social capital in their Online Social Networks, users need to disclose personal information, a behavior that at the same time leads to a lower level of privacy. In this conceptual paper, we offer a new theoretical perspective on the question of why people might regulate their privacy boundaries inadequately when communicating in Online Social Networks. We argue that people have developed a subjective theory about online privacy putting them into a processing mode of default trust. In this trusting mode people would (a discount the risk of a self-disclosure directly; and (b infer the risk from invalid cues which would then reinforce their trusting mode. As a consequence people might be more willing to self-disclose information than their actual privacy preferences would otherwise indicate. We exemplify the biasing potential of a trusting mode for memory and metacognitive accuracy and discuss the role of a default trust mode for the development of social capital.

  5. New Directions for Academic Video Game Collections: Strategies for Acquiring, Supporting, and Managing Online Materials

    Science.gov (United States)

    Robson, Diane; Durkee, Patrick

    2012-01-01

    The work of collection development in academic video game collections is at a crucial point of transformation--gaming librarians are ready to expand beyond console games collected in disc and cartridge format to the world of Internet games. At the same time, forms and genres of video games such as serious and independent games are increasingly…

  6. DMTB: the magnetotactic bacteria database

    Science.gov (United States)

    Pan, Y.; Lin, W.

    2012-12-01

    Magnetotactic bacteria (MTB) are of interest in biogeomagnetism, rock magnetism, microbiology, biomineralization, and advanced magnetic materials because of their ability to synthesize highly ordered intracellular nano-sized magnetic minerals, magnetite or greigite. Great strides for MTB studies have been made in the past few decades. More than 600 articles concerning MTB have been published. These rapidly growing data are stimulating cross disciplinary studies in such field as biogeomagnetism. We have compiled the first online database for MTB, i.e., Database of Magnestotactic Bacteria (DMTB, http://database.biomnsl.com). It contains useful information of 16S rRNA gene sequences, oligonucleotides, and magnetic properties of MTB, and corresponding ecological metadata of sampling sites. The 16S rRNA gene sequences are collected from the GenBank database, while all other data are collected from the scientific literature. Rock magnetic properties for both uncultivated and cultivated MTB species are also included. In the DMTB database, data are accessible through four main interfaces: Site Sort, Phylo Sort, Oligonucleotides, and Magnetic Properties. References in each entry serve as links to specific pages within public databases. The online comprehensive DMTB will provide a very useful data resource for researchers from various disciplines, e.g., microbiology, rock magnetism and paleomagnetism, biogeomagnetism, magnetic material sciences and others.

  7. Using online, crowdsourcing platforms for data collection in personality disorder research: The example of Amazon's Mechanical Turk.

    Science.gov (United States)

    Miller, Joshua D; Crowe, Michael; Weiss, Brandon; Maples-Keller, Jessica L; Lynam, Donald R

    2017-01-01

    The use of crowdsourcing platforms such as Amazon's Mechanical Turk (MTurk) for data collection in the behavioral sciences has increased substantially in the past several years due in large part to (a) the ability to recruit large samples, (b) the inexpensiveness of data collection, (c) the speed of data collection, and (d) evidence that the data collected are, for the most part, of equal or better quality to that collected in undergraduate research pools. In this review, we first evaluate the strengths and potential limitations of this approach to data collection. Second, we examine how MTurk has been used to date in personality disorder (PD) research and compare the characteristics of such research to PD research conducted in other settings. Third, we compare PD trait data from the Section III trait model of the DSM-5 collected via MTurk to data collected using undergraduate and clinical samples with regard to internal consistency, mean-level differences, and factor structure. Overall, we conclude that platforms such as MTurk have much to offer PD researchers, especially for certain kinds of research (e.g., where large samples are required and there is a need for iterative sampling). Whether MTurk itself remains the predominant model of such platforms is unclear, however, and will largely depend on decisions related to cost effectiveness and the development of alternatives that offer even greater flexibility. (PsycINFO Database Record

  8. BADERI: an online database to coordinate handsearching activities of controlled clinical trials for their potential inclusion in systematic reviews.

    Science.gov (United States)

    Pardo-Hernandez, Hector; Urrútia, Gerard; Barajas-Nava, Leticia A; Buitrago-Garcia, Diana; Garzón, Julieth Vanessa; Martínez-Zapata, María José; Bonfill, Xavier

    2017-06-13

    Systematic reviews provide the best evidence on the effect of health care interventions. They rely on comprehensive access to the available scientific literature. Electronic search strategies alone may not suffice, requiring the implementation of a handsearching approach. We have developed a database to provide an Internet-based platform from which handsearching activities can be coordinated, including a procedure to streamline the submission of these references into CENTRAL, the Cochrane Collaboration Central Register of Controlled Trials. We developed a database and a descriptive analysis. Through brainstorming and discussion among stakeholders involved in handsearching projects, we designed a database that met identified needs that had to be addressed in order to ensure the viability of handsearching activities. Three handsearching teams pilot tested the proposed database. Once the final version of the database was approved, we proceeded to train the staff involved in handsearching. The proposed database is called BADERI (Database of Iberoamerican Clinical Trials and Journals, by its initials in Spanish). BADERI was officially launched in October 2015, and it can be accessed at www.baderi.com/login.php free of cost. BADERI has an administration subsection, from which the roles of users are managed; a references subsection, where information associated to identified controlled clinical trials (CCTs) can be entered; a reports subsection, from which reports can be generated to track and analyse the results of handsearching activities; and a built-in free text search engine. BADERI allows all references to be exported in ProCite files that can be directly uploaded into CENTRAL. To date, 6284 references to CCTs have been uploaded to BADERI and sent to CENTRAL. The identified CCTs were published in a total of 420 journals related to 46 medical specialties. The year of publication ranged between 1957 and 2016. BADERI allows the efficient management of handsearching

  9. The Danish Prostate Cancer Database

    DEFF Research Database (Denmark)

    Nguyen-Nielsen, Mary; Høyer, Søren; Friis, Søren

    2016-01-01

    AIM OF DATABASE: The Danish Prostate Cancer Database (DAPROCAdata) is a nationwide clinical cancer database that has prospectively collected data on patients with incident prostate cancer in Denmark since February 2010. The overall aim of the DAPROCAdata is to improve the quality of prostate cancer...... care in Denmark by systematically collecting key clinical variables for the purposes of health care monitoring, quality improvement, and research. STUDY POPULATION: All Danish patients with histologically verified prostate cancer are included in the DAPROCAdata. MAIN VARIABLES: The DAPROCAdata...... registers clinical data and selected characteristics for patients with prostate cancer at diagnosis. Data are collected from the linkage of nationwide health registries and supplemented with online registration of key clinical variables by treating physicians at urological and oncological departments. Main...

  10. Looking Tasks Online: Utilizing Webcams to Collect Video Data from Home

    Directory of Open Access Journals (Sweden)

    Kilian Semmelmann

    2017-09-01

    Full Text Available Online experimentation is emerging as a new methodology within classical data acquisition in psychology. It allows for easy, fast, broad, and cheap data conduction from the comfort of people’s homes. To add another method to the array of available tools, here we used recent developments in web technology to investigate the technical feasibility of online HyperText Markup Language-5/JavaScript-based video data recording. We employed a preferential looking task with children between 4 and 24 months. Parents and their children participated from home through a three-stage process: First, interested adults registered and took pictures through a webcam-based photo application. In the second step, we edited the pictures and integrated them into the design. Lastly, participants returned to the website and the video data acquisition took place through their webcam. In sum, we were able to create and employ the video recording application with participants as young as 4 months old. Quality-wise, no participant had to be removed due to the framerate or quality of videos and only 7% of data was excluded due to behavioral factors (lack of concentration. Results-wise, interrater reliability of rated looking side (left/right showed a high agreement between raters, Fleiss’ Kappa, κ = 0.97, which can be translated to sufficient data quality for further analyses. With regard to on-/off-screen attention attribution, we found that children lost interest after about 10 s after trial onset using a static image presentation or 60 s total experimental time. Taken together, we were able to show that online video data recording is possible and viable for developmental psychology and beyond.

  11. 75 FR 15401 - Information Collection; Online Registration for FSA-sponsored Events and Conferences

    Science.gov (United States)

    2010-03-29

    .... The information is used to collect payment from the respondents and make hotel reservations and other... burden including the validity of the methodology and assumptions used; (3) Enhance the quality, utility..., mechanical, or other technological collection techniques or other forms of information technology. All...

  12. 78 FR 16649 - Information Collection; Online Registration for FSA-sponsored Events and Conferences

    Science.gov (United States)

    2013-03-18

    ... to collect payment from the respondents and make hotel reservations and other special arrangements as... validity of the methodology and assumptions used; (3) Enhance the quality, utility, and clarity of the... technological collection techniques or other forms of information technology. All responses to this notice...

  13. 78 FR 15959 - Proposed Collection; 60-day Comment Request: Early Career Reviewer Program Online Application...

    Science.gov (United States)

    2013-03-13

    ... HUMAN SERVICES National Institutes of Health Proposed Collection; 60-day Comment Request: Early Career... appropriate automated, electronic, mechanical, or other technological collection techniques or other forms of... address to: CSRearlyCareerReviewer@mail.nih.gov . Formal requests for additional plans and...

  14. The Chloroplast Function Database II: a comprehensive collection of homozygous mutants and their phenotypic/genotypic traits for nuclear-encoded chloroplast proteins.

    Science.gov (United States)

    Myouga, Fumiyoshi; Akiyama, Kenji; Tomonaga, Yumi; Kato, Aya; Sato, Yuka; Kobayashi, Megumi; Nagata, Noriko; Sakurai, Tetsuya; Shinozaki, Kazuo

    2013-02-01

    The Chloroplast Function Database has so far offered phenotype information on mutants of the nuclear-encoded chloroplast proteins in Arabidopsis that pertains to >200 phenotypic data sets that were obtained from 1,722 transposon- or T-DNA-tagged lines. Here, we present the development of the second version of the database, which is named the Chloroplast Function Database II and was redesigned to increase the number of mutant characters and new user-friendly tools for data mining and integration. The upgraded database offers information on genome-wide mutant screens for any visible phenotype against 2,495 tagged lines to create a comprehensive homozygous mutant collection. The collection consists of 147 lines with seedling phenotypes and 185 lines for which we could not obtain homozygotes, as well as 1,740 homozygotes with wild-type phenotypes. Besides providing basic information about primer lists that were used for the PCR genotyping of T-DNA-tagged lines and explanations about the preparation of homozygous mutants and phenotype screening, the database includes access to a link between the gene locus and existing publicly available databases. This gives users access to a combined pool of data, enabling them to gain valuable insights into biological processes. In addition, high-resolution images of plastid morphologies of mutants with seedling-specific chloroplast defects as observed with transmission electron microscopy (TEM) are available in the current database. This database is used to compare the phenotypes of visually identifiable mutants with their plastid ultrastructures and to evaluate their potential significance from characteristic patterns of plastid morphology in vivo. Thus, the Chloroplast Function Database II is a useful and comprehensive information resource that can help researchers to connect individual Arabidopsis genes to plastid functions on the basis of phenotype analysis of our tagged mutant collection. It can be freely accessed at http://rarge.psc.riken.jp/chloroplast/.

  15. Complementary Value of Databases for Discovery of Scholarly Literature: A User Survey of Online Searching for Publications in Art History

    Science.gov (United States)

    Nemeth, Erik

    2010-01-01

    Discovery of academic literature through Web search engines challenges the traditional role of specialized research databases. Creation of literature outside academic presses and peer-reviewed publications expands the content for scholarly research within a particular field. The resulting body of literature raises the question of whether scholars…

  16. Assessment of the Effectiveness of Extracorporeal Shock Wave Therapy (ESWT) For Soft Tissue Injuries (ASSERT): An Online Database Protocol

    OpenAIRE

    Maffulli, G; Hemmings, Steph; Maffulli, Nicola

    2014-01-01

    Background Soft tissue injuries and tendinopathies account for large numbers of chronic musculoskeletal disorders. Extracorporeal shockwave therapy (ESWT) is popular, and effective in the management of chronic tendon conditions in the elbow, shoulder, and pain at and around the heel. Methods/Design Ethical approval was granted from the South East London Research Ethics Committee to implement a database for the Assessment of Effectiveness of Extracorporeal Shock Wave Therapy for Soft Tis...

  17. Can an online clinical data management service help in improving data collection and data quality in a developing country setting?

    Directory of Open Access Journals (Sweden)

    Wildeman Maarten A

    2011-08-01

    Full Text Available Background Data collection by Electronic Medical Record (EMR systems have been proven to be helpful in data collection for scientific research and in improving healthcare. For a multi-centre trial in Indonesia and the Netherlands a web based system was selected to enable all participating centres to easily access data. This study assesses whether the introduction of a Clinical Trial Data Management service (CTDMS composed of electronic Case Report Forms (eCRF can result in effective data collection and treatment monitoring. Methods Data items entered were checked for inconsistencies automatically when submitted online. The data were divided into primary and secondary data items. We analysed both the total number of errors and the change in error rate, for both Primary and Secondary items, over the first five month of the trial. Results In the first five months 51 patients were entered. The Primary data error rate was 1.6%, whilst that for Secondary data was 2.7% against acceptable error rates for analysis of 1% and 2.5% respectively. Conclusion The presented analysis shows that after five months since the introduction of the CTDMS the Primary and Secondary data error rates reflect acceptable levels of data quality. Furthermore, these error rates were decreasing over time. The digital nature of the CTDMS, as well as the online availability of that data, gives fast and easy insight in adherence to treatment protocols. As such, the CTDMS can serve as a tool to train and educate medical doctors and can improve treatment protocols.

  18. Can an online clinical data management service help in improving data collection and data quality in a developing country setting?

    Science.gov (United States)

    2011-01-01

    Background Data collection by Electronic Medical Record (EMR) systems have been proven to be helpful in data collection for scientific research and in improving healthcare. For a multi-centre trial in Indonesia and the Netherlands a web based system was selected to enable all participating centres to easily access data. This study assesses whether the introduction of a Clinical Trial Data Management service (CTDMS) composed of electronic Case Report Forms (eCRF) can result in effective data collection and treatment monitoring. Methods Data items entered were checked for inconsistencies automatically when submitted online. The data were divided into primary and secondary data items. We analysed both the total number of errors and the change in error rate, for both Primary and Secondary items, over the first five month of the trial. Results In the first five months 51 patients were entered. The Primary data error rate was 1.6%, whilst that for Secondary data was 2.7% against acceptable error rates for analysis of 1% and 2.5% respectively. Conclusion The presented analysis shows that after five months since the introduction of the CTDMS the Primary and Secondary data error rates reflect acceptable levels of data quality. Furthermore, these error rates were decreasing over time. The digital nature of the CTDMS, as well as the online availability of that data, gives fast and easy insight in adherence to treatment protocols. As such, the CTDMS can serve as a tool to train and educate medical doctors and can improve treatment protocols. PMID:21824421

  19. A new aerosol collector for on-line analysis of particulate organic matter: the Aerosol Collection Module (ACM)

    Science.gov (United States)

    Hohaus, T.; Trimborn, D.; Kiendler-Scharr, A.; Gensch, I.; Laumer, W.; Kammer, B.; Andres, S.; Boudries, H.; Smith, K. A.; Worsnop, D. R.; Jayne, J. T.

    2010-03-01

    In many environments organic matter significantly contributes to the composition of atmospheric aerosol particles influencing its properties. Detailed chemical characterization of ambient aerosols is critical in order to understand the formation process, composition, and properties of aerosols in the atmosphere. However, current analytical methods are far from full speciation of organic aerosols and often require long sampling times. Offline methods are also subjected to artifacts during aerosol collection and storage. In the present work a new technique for quasi-online compound specific measurements of organic aerosol particles was developed. The Aerosol Collection Module (ACM) is designed to sample, collect and transfer gasified atmospheric aerosol particles. The system focuses particles into a beam which is directed to a cooled sampling surface. The sampling takes places in a high vacuum environment where the gas phase from the sample volume is removed. After collection the particle sample is evaporated from the collection surface through heating and transferred to a detector. For laboratory characterization the ACM was interfaced with a Gas Chromatograph Mass Spectrometer system (GC-MS). The particle collection efficiency, gas phase transfer efficiency, and linearity of the ACM-GC-MS were determined using laboratory generated octadecane aerosols. The ACM-GC-MS is linear over the investigated mass range of 10 to 100 ng and a recovery rate of 100% was found for octadecane particles. The ACM-GC-MS was applied to investigate secondary organic aerosol (SOA) formed from β-pinene oxidation. Nopinone, myrtanal, myrtenol, 1-hydroxynopinone, 3-oxonopinone, 3,7-dihydroxynopinone, and bicyclo[3,1,1]hept-3-ene-2-one were found as products in the SOA. The ACM results are compared to quartz filter samples taken in parallel to the ACM measurements. First measurements of ambient atmospheric aerosols are presented.

  20. A new aerosol collector for on-line analysis of particulate organic matter: the Aerosol Collection Module (ACM

    Directory of Open Access Journals (Sweden)

    T. Hohaus

    2010-03-01

    Full Text Available In many environments organic matter significantly contributes to the composition of atmospheric aerosol particles influencing its properties. Detailed chemical characterization of ambient aerosols is critical in order to understand the formation process, composition, and properties of aerosols in the atmosphere. However, current analytical methods are far from full speciation of organic aerosols and often require long sampling times. Offline methods are also subjected to artifacts during aerosol collection and storage.

    In the present work a new technique for quasi-online compound specific measurements of organic aerosol particles was developed. The Aerosol Collection Module (ACM is designed to sample, collect and transfer gasified atmospheric aerosol particles. The system focuses particles into a beam which is directed to a cooled sampling surface. The sampling takes places in a high vacuum environment where the gas phase from the sample volume is removed. After collection the particle sample is evaporated from the collection surface through heating and transferred to a detector.

    For laboratory characterization the ACM was interfaced with a Gas Chromatograph Mass Spectrometer system (GC-MS. The particle collection efficiency, gas phase transfer efficiency, and linearity of the ACM-GC-MS were determined using laboratory generated octadecane aerosols. The ACM-GC-MS is linear over the investigated mass range of 10 to 100 ng and a recovery rate of 100% was found for octadecane particles.

    The ACM-GC-MS was applied to investigate secondary organic aerosol (SOA formed from β-pinene oxidation. Nopinone, myrtanal, myrtenol, 1-hydroxynopinone, 3-oxonopinone, 3,7-dihydroxynopinone, and bicyclo[3,1,1]hept-3-ene-2-one were found as products in the SOA. The ACM results are compared to quartz filter samples taken in parallel to the ACM measurements. First measurements of ambient atmospheric aerosols are presented.

  1. Transition due to preferential cluster growth of collective emotions in online communities

    Science.gov (United States)

    Chmiel, Anna; Hołyst, Janusz A.

    2013-02-01

    We consider a preferential cluster growth in a stochastic model describing the dynamics of a binary Markov chain with an additional long-range memory. The model is driven by data describing emotional patterns observed in online community discussions with binary states corresponding to emotional valences. Numerical simulations and approximate analytical calculations show that the pattern of frequencies depends on a preference exponent related to the memory strength in our model. For low values of this exponent in the majority of simulated discussion threads both emotions are observed with similar frequencies. When the exponent increases an ordered phase emerges in the majority of threads, i.e., only one emotion is represented from a certain moment. Similar changes are observed with increase of a single-step Markov memory value. The transition becomes discontinuous in the thermodynamical limit when discussions are infinitely long and even an infinitely small preference exponent leads to ordered behavior in each discussion thread. Numerical simulations are in a good agreement with the approximated analytical formula. The model resembles a dynamical phase transition observed in other Markov models with a long memory where persistent dynamics follows from a transition to a superdiffusion phase. The ordered patterns predicted by our model have been found in the Blog06 dataset although their number is limited by fluctuations and sentiment classification errors.

  2. Design of cohort studies in chronic diseases using routinely collected databases when a prescription is used as surrogate outcome

    Directory of Open Access Journals (Sweden)

    Egger Peter

    2011-04-01

    Full Text Available Abstract Background There has been little research on design of studies based on routinely collected data when the clinical endpoint of interest is not recorded, but can be inferred from a prescription. This often happens when exploring the effect of a drug on chronic diseases. Using the LifeLink claims database in studying the possible anti-inflammatory effects of statins in rheumatoid arthritis (RA, oral steroids (OS were treated as surrogate of inflammatory flare-ups. We compared two cohort study designs, the first using time to event outcomes and the second using quantitative amount of the surrogate. Methods RA patients were extracted from the LifeLink database. In the first study, patients were split into two sub-cohorts based on whether they were using OS within a specified time window of the RA index date (first record of RA. Using Cox models we evaluated the association between time-varying exposure to statins and (i initiation of OS therapy in the non-users of OS at RA index date and (ii cessation of OS therapy in the users of OS at RA index date. In the second study, we matched new statin users to non users on age and sex. Zero inflated negative binomial models were used to contrast the number of days' prescriptions of OS in the year following date of statin initiation for the two exposure groups. Results In the unmatched study, the statin exposure hazard ratio (HR of initiating OS in the 31451 non-users of OS at RA index date was 0.96(95% CI 0.9,1.1 and the statin exposure HR of cessation of OS therapy in the 6026 users of OS therapy at RA index date was 0.95 (0.87,1.05. In the matched cohort of 6288 RA patients the statin exposure rate ratio for duration on OS therapy was 0.88(0.76,1.02. There was digit preference for outcomes in multiples of 7 and 30 days. Conclusions The 'time to event' study design was preferable because it better exploits information on all available patients and provides a degree of robustness toward confounding

  3. The MAO NASU Plate Archive Database. Current Status and Perspectives

    Science.gov (United States)

    Pakuliak, L. K.; Sergeeva, T. P.

    2006-04-01

    The preliminary online version of the database of the MAO NASU plate archive is constructed on the basis of the relational database management system MySQL and permits an easy supplement of database with new collections of astronegatives, provides a high flexibility in constructing SQL-queries for data search optimization, PHP Basic Authorization protected access to administrative interface and wide range of search parameters. The current status of the database will be reported and the brief description of the search engine and means of the database integrity support will be given. Methods and means of the data verification and tasks for the further development will be discussed.

  4. Challenges Building Online GIS Services to Support Global Biodiversity Mapping and Analysis: Lessons from the Mountain and Plains Database and Informatics project

    Directory of Open Access Journals (Sweden)

    Robert P Guralnick

    2005-01-01

    Full Text Available We argue that distributed mapping and analysis of biodiversity information becoming available on global distributed networks is a lynchpin activity linking together research and development challenges in biodiversity informatics. Online mapping is a core activity because it allows users to visually explore the spatial context of biodiversity information and quickly assemble the datasets needed to ask and answer biodiversity research and management questions. We make the case that a free, online global biodiversity mapping tool utilizing distributed species occurrence records is now within reach and discuss how such a system can be built using existing technology. We also discuss additional challenges and solutions given experiences building a regional distributed GIS tool called MaPSTeDI (Mountain and Plains Spatio-Temporal Database and Informatics Initiative. We focus on solutions to three challenges in particular: Returning result queries in a reasonable amount of time given network limitations; Accessing multiple data sources using different transmission mechanisms; Scaling from a solution for a handful of data providers to hundreds or thousands of providers. We close by discussing the future challenges and potential solutions for integrating analysis tools into distributed mapping applications.

  5. Using a participatory evaluation design to create an online data collection and monitoring system for New Mexico's Community Health Councils.

    Science.gov (United States)

    Andrews, M L; Sánchez, V; Carrillo, C; Allen-Ananins, B; Cruz, Y B

    2014-02-01

    We present the collaborative development of a web-based data collection and monitoring plan for thirty-two county councils within New Mexico's health council system. The monitoring plan, a key component in our multiyear participatory statewide evaluation process, was co-developed with the end users: representatives of the health councils. Guided by the Institute of Medicine's Community, Health Improvement Process framework, we first developed a logic model that delineated processes and intermediate systems-level outcomes in council development, planning, and community action. Through the online system, health councils reported data on intermediate outcomes, including policy changes and funds leveraged. The system captured data that were common across the health council system, yet was also flexible so that councils could report their unique accomplishments at the county level. A main benefit of the online system was that it provided the ability to assess intermediate, outcomes across the health council system. Developing the system was not without challenges, including creating processes to ensure participation across a large rural state; creating shared understanding of intermediate outcomes and indicators; and overcoming technological issues. Even through the challenges, however, the benefits of committing to using participatory processes far outweighed the challenges. Copyright © 2013 Elsevier Ltd. All rights reserved.

  6. Black Lives Matter in Wikipedia: Collaboration and Collective Memory around Online Social Movements

    CERN Document Server

    Twyman, Marlon; Shaw, Aaron

    2016-01-01

    Social movements use social computing systems to complement offline mobilizations, but prior literature has focused almost exclusively on movement actors' use of social media. In this paper, we analyze participation and attention to topics connected with the Black Lives Matter movement in the English language version of Wikipedia between 2014 and 2016. Our results point to the use of Wikipedia to (1) intensively document and connect historical and contemporary events, (2) collaboratively migrate activity to support coverage of new events, and (3) dynamically re-appraise pre-existing knowledge in the aftermath of new events. These findings reveal patterns of behavior that complement theories of collective memory and collective action and help explain how social computing systems can encode and retrieve knowledge about social movements as they unfold.

  7. Can Human-Like Bots Control Collective Mood: Agent-Based Simulations of Online Chats

    CERN Document Server

    Tadic, Bosiljka

    2013-01-01

    Using agent-based modeling approach, in this paper, we study self-organized dynamics of interacting agents in the presence of chat Bots. Different Bots with tunable ``human-like'' attributes, which exchange emotional messages with agents, are considered, and collective emotional behavior of agents is quantitatively analysed. In particular, using detrended fractal analysis we determine persistent fluctuations and temporal correlations in time series of agent's activity and statistics of avalanches carrying emotional messages of agents when Bots favoring positive/negative affects are active. We determine the impact of Bots and identify parameters that can modulate it. Our analysis suggests that, by these measures, the emotional Bots induce collective emotion among interacting agents by suitably altering the fractal characteristics of the underlying stochastic process.Positive-emotion Bots are slightly more effective than the negative ones. Moreover, the Bots which are periodically alternating between positive a...

  8. A collective intelligence approach for building student's trustworthiness profile in online learning

    OpenAIRE

    Miguel, Jorge; Caballé Llobet, Santiago; Xhafa Xhafa, Fatos; Prieto, Josep; Barolli, Leonard

    2014-01-01

    (c) 2014 IEEE. Personal use of this material is permitted. Permission from IEEE must be obtained for all other users, including reprinting/republishing this material for advertising or promotional purposes, creating new collective works for resale or redistribution to servers or lists, or reuse of any copyrighted components of this work in other works. Information and communication technologies have been widely adopted in most of educational institutions to support e-Learning through diffe...

  9. Water and carbon stable isotope records from natural archives: a new database and interactive online platform for data browsing, visualizing and downloading

    Science.gov (United States)

    Bolliet, Timothé; Brockmann, Patrick; Masson-Delmotte, Valérie; Bassinot, Franck; Daux, Valérie; Genty, Dominique; Landais, Amaelle; Lavrieux, Marlène; Michel, Elisabeth; Ortega, Pablo; Risi, Camille; Roche, Didier M.; Vimeux, Françoise; Waelbroeck, Claire

    2016-08-01

    Past climate is an important benchmark to assess the ability of climate models to simulate key processes and feedbacks. Numerous proxy records exist for stable isotopes of water and/or carbon, which are also implemented inside the components of a growing number of Earth system model. Model-data comparisons can help to constrain the uncertainties associated with transfer functions. This motivates the need of producing a comprehensive compilation of different proxy sources. We have put together a global database of proxy records of oxygen (δ18O), hydrogen (δD) and carbon (δ13C) stable isotopes from different archives: ocean and lake sediments, corals, ice cores, speleothems and tree-ring cellulose. Source records were obtained from the georeferenced open access PANGAEA and NOAA libraries, complemented by additional data obtained from a literature survey. About 3000 source records were screened for chronological information and temporal resolution of proxy records. Altogether, this database consists of hundreds of dated δ18O, δ13C and δD records in a standardized simple text format, complemented with a metadata Excel catalog. A quality control flag was implemented to describe age markers and inform on chronological uncertainty. This compilation effort highlights the need to homogenize and structure the format of datasets and chronological information as well as enhance the distribution of published datasets that are currently highly fragmented and scattered. We also provide an online portal based on the records included in this database with an intuitive and interactive platform (http://climateproxiesfinder.ipsl.fr/), allowing one to easily select, visualize and download subsets of the homogeneously formatted records that constitute this database, following a choice of search criteria, and to upload new datasets. In the last part, we illustrate the type of application allowed by our database by comparing several key periods highly investigated by the

  10. Reading the Mind in the Eyes or reading between the lines? Theory of Mind predicts collective intelligence equally well online and face-to-face.

    Directory of Open Access Journals (Sweden)

    David Engel

    Full Text Available Recent research with face-to-face groups found that a measure of general group effectiveness (called "collective intelligence" predicted a group's performance on a wide range of different tasks. The same research also found that collective intelligence was correlated with the individual group members' ability to reason about the mental states of others (an ability called "Theory of Mind" or "ToM". Since ToM was measured in this work by a test that requires participants to "read" the mental states of others from looking at their eyes (the "Reading the Mind in the Eyes" test, it is uncertain whether the same results would emerge in online groups where these visual cues are not available. Here we find that: (1 a collective intelligence factor characterizes group performance approximately as well for online groups as for face-to-face groups; and (2 surprisingly, the ToM measure is equally predictive of collective intelligence in both face-to-face and online groups, even though the online groups communicate only via text and never see each other at all. This provides strong evidence that ToM abilities are just as important to group performance in online environments with limited nonverbal cues as they are face-to-face. It also suggests that the Reading the Mind in the Eyes test measures a deeper, domain-independent aspect of social reasoning, not merely the ability to recognize facial expressions of mental states.

  11. Can human-like Bots control collective mood: agent-based simulations of online chats

    Science.gov (United States)

    Tadić, Bosiljka; Šuvakov, Milovan

    2013-10-01

    Using an agent-based modeling approach, in this paper, we study self-organized dynamics of interacting agents in the presence of chat Bots. Different Bots with tunable ‘human-like’ attributes, which exchange emotional messages with agents, are considered, and the collective emotional behavior of agents is quantitatively analyzed. In particular, using detrended fractal analysis we determine persistent fluctuations and temporal correlations in time series of agent activity and statistics of avalanches carrying emotional messages of agents when Bots favoring positive/negative affects are active. We determine the impact of Bots and identify parameters that can modulate that impact. Our analysis suggests that, by these measures, the emotional Bots induce collective emotion among interacting agents by suitably altering the fractal characteristics of the underlying stochastic process. Positive emotion Bots are slightly more effective than negative emotion Bots. Moreover, Bots which periodically alternate between positive and negative emotion can enhance fluctuations in the system, leading to avalanches of agent messages that are reminiscent of self-organized critical states.

  12. Modeling of The hERG K+ Channel Blockage Using Online Chemical Database and Modeling Environment (OCHEM).

    Science.gov (United States)

    Li, Xiao; Zhang, Yuan; Li, Huanhuan; Zhao, Yong

    2017-08-30

    Human ether-a-go-go related gene (hERG) K+ channel plays an important role in cardiac action potential. Blockage of hERG channel may result in long QT syndrome (LQTS), even cause sudden cardiac death. Many drugs have been withdrawn from the market because of the serious hERG-related cardiotoxicity. Therefore, it is quite essential to estimate the chemical blockage of hERG in the early stage of drug discovery. In this study, a diverse set of 3721 compounds with hERG inhibition data was assembled from literature. Then, we make full use of the Online Chemical Modeling Environment (OCHEM), which supplies rich machine learning methods and descriptor sets, to build a series of classification models for hERG blockage. We also generated two consensus models based on the top-performing individual models. The consensus models performed much better than the individual models both on 5-fold cross validation and external validation. Especially, consensus model II yielded the prediction accuracy of 89.5 % and MCC of 0.670 on external validation. This result indicated that the predictive power of consensus model II should be stronger than most of the previously reported models. The 17 top-performing individual models and the consensus models and the data sets used for model development are available at https://ochem.eu/article/103592. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  13. The Structural Transformation of the Public Sphere on the Internet: Focused on New Media Literacy and Collectivity of Online Communities

    Science.gov (United States)

    Shin, Jiwon

    2013-01-01

    Through the case of one online disputant, Minerva, this study intended to see the possibilities of online communities as the public sphere. Minerva's postings and comments were analyzed using discourse analysis and ground theory. It was found that the online community did act as the public sphere at that time, such as setting agenda and developing…

  14. Rainfall Erosivity Database on the European Scale (REDES): A product of a high temporal resolution rainfall data collection in Europe

    Science.gov (United States)

    Panagos, Panos; Ballabio, Cristiano; Borrelli, Pasquale; Meusburger, Katrin; Alewell, Christine

    2016-04-01

    The erosive force of rainfall is expressed as rainfall erosivity. Rainfall erosivity considers the rainfall amount and intensity, and is most commonly expressed as the R-factor in the (R)USLE model. The R-factor is calculated from a series of single storm events by multiplying the total storm kinetic energy with the measured maximum 30-minutes rainfall intensity. This estimation requests high temporal resolution (e.g. 30 minutes) rainfall data for sufficiently long time periods (i.e. 20 years) which are not readily available at European scale. The European Commission's Joint Research Centre(JRC) in collaboration with national/regional meteorological services and Environmental Institutions made an extensive data collection of high resolution rainfall data in the 28 Member States of the European Union plus Switzerland in order to estimate rainfall erosivity in Europe. This resulted in the Rainfall Erosivity Database on the European Scale (REDES) which included 1,541 rainfall stations in 2014 and has been updated with 134 additional stations in 2015. The interpolation of those point R-factor values with a Gaussian Process Regression (GPR) model has resulted in the first Rainfall Erosivity map of Europe (Science of the Total Environment, 511, 801-815). The intra-annual variability of rainfall erosivity is crucial for modelling soil erosion on a monthly and seasonal basis. The monthly feature of rainfall erosivity has been added in 2015 as an advancement of REDES and the respective mean annual R-factor map. Almost 19,000 monthly R-factor values of REDES contributed to the seasonal and monthly assessments of rainfall erosivity in Europe. According to the first results, more than 50% of the total rainfall erosivity in Europe takes place in the period from June to September. The spatial patterns of rainfall erosivity have significant differences between Northern and Southern Europe as summer is the most erosive period in Central and Northern Europe and autumn in the

  15. Scaling up health knowledge at European level requires sharing integrated data: an approach for collection of database specification.

    Science.gov (United States)

    Menditto, Enrica; Bolufer De Gea, Angela; Cahir, Caitriona; Marengoni, Alessandra; Riegler, Salvatore; Fico, Giuseppe; Costa, Elisio; Monaco, Alessandro; Pecorelli, Sergio; Pani, Luca; Prados-Torres, Alexandra

    2016-01-01

    Computerized health care databases have been widely described as an excellent opportunity for research. The availability of "big data" has brought about a wave of innovation in projects when conducting health services research. Most of the available secondary data sources are restricted to the geographical scope of a given country and present heterogeneous structure and content. Under the umbrella of the European Innovation Partnership on Active and Healthy Ageing, collaborative work conducted by the partners of the group on "adherence to prescription and medical plans" identified the use of observational and large-population databases to monitor medication-taking behavior in the elderly. This article describes the methodology used to gather the information from available databases among the Adherence Action Group partners with the aim of improving data sharing on a European level. A total of six databases belonging to three different European countries (Spain, Republic of Ireland, and Italy) were included in the analysis. Preliminary results suggest that there are some similarities. However, these results should be applied in different contexts and European countries, supporting the idea that large European studies should be designed in order to get the most of already available databases.

  16. Scaling up health knowledge at European level requires sharing integrated data: an approach for collection of database specification

    Directory of Open Access Journals (Sweden)

    Menditto E

    2016-06-01

    Full Text Available Enrica Menditto,1 Angela Bolufer De Gea,2 Caitriona Cahir,3,4 Alessandra Marengoni,5 Salvatore Riegler,1 Giuseppe Fico,6 Elisio Costa,7 Alessandro Monaco,8 Sergio Pecorelli,5 Luca Pani,8 Alexandra Prados-Torres9 1School of Pharmacy, CIRFF/Center of Pharmacoeconomics, University of Naples Federico II, Naples, Italy; 2Directorate-General for Health and Food Safety, European Commission, Brussels, Belgium; 3Division of Population Health Sciences, Royal College of Surgeons in Ireland, 4Department of Pharmacology and Therapeutics, St James’s Hospital, Dublin, Ireland; 5Department of Clinical and Experimental Science, University of Brescia, Brescia; 6Life Supporting Technologies, Photonics Technology and Bioengineering Department, School of Telecomunications Engineering, Polytechnic University of Madrid, Madrid, Spain; 7Faculty of Pharmacy, University of Porto, Porto, Portugal; 8Italian Medicines Agency – AIFA, Rome, Italy; 9EpiChron Research Group on Chronic Diseases, Aragón Health Sciences Institute (IACS, IIS Aragón REDISSEC ISCIII, Miguel Servet University Hospital, University of Zaragoza, Zaragoza, Spain Abstract: Computerized health care databases have been widely described as an excellent opportunity for research. The availability of “big data” has brought about a wave of innovation in projects when conducting health services research. Most of the available secondary data sources are restricted to the geographical scope of a given country and present heterogeneous structure and content. Under the umbrella of the European Innovation Partnership on Active and Healthy Ageing, collaborative work conducted by the partners of the group on “adherence to prescription and medical plans” identified the use of observational and large-population databases to monitor medication-taking behavior in the elderly. This article describes the methodology used to gather the information from available databases among the Adherence Action Group partners

  17. Online focus groups as a tool to collect data in hard-to-include populations : examples from paediatric oncology

    NARCIS (Netherlands)

    Tates, Kiek; Zwaanswijk, Marieke; Otten, Roel; van Dulmen, Sandra; Hoogerbrugge, Peter M.; Kamps, Willem A.; Bensing, Jozien M.

    2009-01-01

    Background: The purpose of this article is to describe and evaluate the methodology of online focus group discussions within the setting of paediatric oncology. Methods: Qualitative study consisting of separate moderated asynchronous online discussion groups with 7 paediatric cancer patients (aged 8

  18. Generic HTML Form Processor: A versatile PHP script to save web-collected data into a MySQL database.

    Science.gov (United States)

    Göritz, Anja S; Birnbaum, Michael H

    2005-11-01

    The customizable PHP script Generic HTML Form Processor is intended to assist researchers and students in quickly setting up surveys and experiments that can be administered via the Web. This script relieves researchers from the burdens of writing new CGI scripts and building databases for each Web study. Generic HTML Form Processor processes any syntactically correct HTML forminput and saves it into a dynamically created open-source database. We describe five modes for usage of the script that allow increasing functionality but require increasing levels of knowledge of PHP and Web servers: The first two modes require no previous knowledge, and the fifth requires PHP programming expertise. Use of Generic HTML Form Processor is free for academic purposes, and its Web address is www.goeritz.net/brmic.

  19. The history of the USDA Nematode Collection and its database: valuable resources for taxonomic research and identification

    Science.gov (United States)

    The United States Department of Agriculture Nematode Collection continues to serve as one of the largest and most comprehensive nematode repositories in the world. Nematology research in the United States began in the late 1800’s, and for many years the collections of the USDA nematologists remained...

  20. Databases and data mining

    Science.gov (United States)

    Over the course of the past decade, the breadth of information that is made available through online resources for plant biology has increased astronomically, as have the interconnectedness among databases, online tools, and methods of data acquisition and analysis. For maize researchers, the numbe...

  1. The collection and database of Birds of Angola hosted at IICT (Instituto de Investigação Científica Tropical), Lisboa, Portugal.

    Science.gov (United States)

    Monteiro, Miguel; Reino, Luís; Beja, Pedro; Mills, Michael Stuart Lyne; Bastos-Silveira, Cristiane; Ramos, Manuela; Rodrigues, Diana; Neves, Isabel Queirós; Consciência, Susana; Figueira, Rui

    2014-01-01

    The bird collection of the Instituto de Investigação Cientítica Tropical (Lisbon, Portugal) holds 5598 preserved specimens (skins), mainly from Angola, Mozambique, Guinea-Bissau, São Tomé and Principe, and Cape Verde. The subset collection from Angola includes 1560 specimens, which were taxonomically revised and georeferenced for the publication of this data paper. The collection contains a total of 522 taxa, including 161 species and 361 subspecies. Two species are classified by the IUCN Red List as Endangered - the wattled crane (Grus carunculata) and the Gabela bush-shrike (Laniarius amboimensis) - and two are classified as vulnerable - African penguin (Spheniscus demersus) and the white-headed vulture (Trigonoceps occipitalis). The temporal span of the database ranges between 1943 and 1979, but 32% are from years 1958-1959, and 25% from years 1968-1969. The spatial coverage of the collection is uneven, with 2/3 of the records representing only four of the eighteen provinces of the country, namely Huíla, Moxico, Namibe and Cuanza Sul. It adds, however, valuable information for the Huíla area of the Angolan Scarp, which is probably a biodiversity hotspot of global conservation priority. Furthermore, this georeferenced database adds invaluable bird information to the GBIF network, for one of the countries with highest but less known biodiversity in Africa.

  2. The collection and database of Birds of Angola hosted at IICT (Instituto de Investigação Científica Tropical, Lisboa, Portugal

    Directory of Open Access Journals (Sweden)

    Miguel Monteiro

    2014-03-01

    Full Text Available The bird collection of the Instituto de Investigação Cientítica Tropical (Lisbon, Portugal holds 5598 preserved specimens (skins, mainly from Angola, Mozambique, Guinea-Bissau, São Tomé and Principe, and Cape Verde. The subset collection from Angola includes 1560 specimens, which were taxonomically revised and georeferenced for the publication of this data paper. The collection contains a total of 522 taxa, including 161 species and 361 subspecies. Two species are classified by the IUCN Red List as Endangered - the wattled crane (Grus carunculata and the Gabela bush-shrike (Laniarius amboimensis - and two are classified as vulnerable - African penguin (Spheniscus demersus and the white-headed vulture (Trigonoceps occipitalis. The temporal span of the database ranges between 1943 and 1979, but 32% are from years 1958–1959, and 25% from years 1968–1969. The spatial coverage of the collection is uneven, with 2/3 of the records representing only four of the eighteen provinces of the country, namely Huíla, Moxico, Namibe and Cuanza Sul. It adds, however, valuable information for the Huíla area of the Angolan Scarp, which is probably a biodiversity hotspot of global conservation priority. Furthermore, this georeferenced database adds invaluable bird information to the GBIF network, for one of the countries with highest but less known biodiversity in Africa.

  3. Analytical results, database management and quality assurance for analysis of soil and groundwater samples collected by cone penetrometer from the F and H Area seepage basins

    Energy Technology Data Exchange (ETDEWEB)

    Boltz, D.R.; Johnson, W.H.; Serkiz, S.M.

    1994-10-01

    The Quantification of Soil Source Terms and Determination of the Geochemistry Controlling Distribution Coefficients (K{sub d} values) of Contaminants at the F- and H-Area Seepage Basins (FHSB) study was designed to generate site-specific contaminant transport factors for contaminated groundwater downgradient of the Basins. The experimental approach employed in this study was to collect soil and its associated porewater from contaminated areas downgradient of the FHSB. Samples were collected over a wide range of geochemical conditions (e.g., pH, conductivity, and contaminant concentration) and were used to describe the partitioning of contaminants between the aqueous phase and soil surfaces at the site. The partitioning behavior may be used to develop site-specific transport factors. This report summarizes the analytical procedures and results for both soil and porewater samples collected as part of this study and the database management of these data.

  4. Socio-economic database online

    Directory of Open Access Journals (Sweden)

    T Tamisier

    2006-01-01

    Full Text Available The SEDO project develops a flexible and reusable platform combining fast access, user freedom, and coherence of the results for presenting socio-economic data. Its first aim is to deliver on the Net the results of longitudinal surveys about the life in Luxemburg. Several search methods are available: hierarchical browsing, engine query, and top down navigation with minimal clicks for quick access to the main trends. Without the use of statistical tools nor expertise in the domain the user can perform advanced statistical calculations. Last, a modular architecture guarantees the portability of the application.

  5. Specialist Bibliographic Databases

    OpenAIRE

    Gasparyan, Armen Yuri; Yessirkepov, Marlen; Voronov, Alexander A.; Trukhachev, Vladimir I.; Kostyukova, Elena I.; Gerasimov, Alexey N.; Kitas, George D.

    2016-01-01

    Specialist bibliographic databases offer essential online tools for researchers and authors who work on specific subjects and perform comprehensive and systematic syntheses of evidence. This article presents examples of the established specialist databases, which may be of interest to those engaged in multidisciplinary science communication. Access to most specialist databases is through subscription schemes and membership in professional associations. Several aggregators of information and d...

  6. Using an International p53 Mutation Database as a Foundation for an Online Laboratory in an Upper Level Undergraduate Biology Class

    Science.gov (United States)

    Melloy, Patricia G.

    2015-01-01

    A two-part laboratory exercise was developed to enhance classroom instruction on the significance of p53 mutations in cancer development. Students were asked to mine key information from an international database of p53 genetic changes related to cancer, the IARC TP53 database. Using this database, students designed several data mining activities…

  7. Biological Databases

    Directory of Open Access Journals (Sweden)

    Kaviena Baskaran

    2013-12-01

    Full Text Available Biology has entered a new era in distributing information based on database and this collection of database become primary in publishing information. This data publishing is done through Internet Gopher where information resources easy and affordable offered by powerful research tools. The more important thing now is the development of high quality and professionally operated electronic data publishing sites. To enhance the service and appropriate editorial and policies for electronic data publishing has been established and editors of article shoulder the responsibility.

  8. DOE's Public Database for Green Building Case Studies: Preprint

    Energy Technology Data Exchange (ETDEWEB)

    Torcellini, P. A.; Crawley, D. B.

    2003-11-01

    To help capture valuable information on''green building'' case studies, the U.S. Department of Energy has created an online database for collecting, standardizing, and disseminating information about high-performance, green projects. Type of information collected includes green features, design processes, energy performance, and comparison to other high-performance, green buildings.

  9. Modeling individual and collective opinion in online social networks: drivers of choice behavior and effects of marketing interventions

    NARCIS (Netherlands)

    Koster, S.E.; Langley, D.J.

    2013-01-01

    We investigate factors influencing choice behavior in online social networks. We use twitter data from a Dutch television talent show. In study one, we implement a nested conditional logit model with latent classes. We find heterogeneous effects. For two latent classes, cognitive factors most strong

  10. FRED, a Front End for Databases.

    Science.gov (United States)

    Crystal, Maurice I.; Jakobson, Gabriel E.

    1982-01-01

    FRED (a Front End for Databases) was conceived to alleviate data access difficulties posed by the heterogeneous nature of online databases. A hardware/software layer interposed between users and databases, it consists of three subsystems: user-interface, database-interface, and knowledge base. Architectural alternatives for this database machine…

  11. Unraveling the personalization paradox: The effect of information collection and trust-building strategies on online advertisement effectiveness

    OpenAIRE

    Aguirre, E.; Mahr, D; Grewal, D.; de Ruyter, K.; Wetzels, M.

    2015-01-01

    Retailers gather data about customers' online behavior to develop personalized service offers. Greater personalization typically increases service relevance and customer adoption, but paradoxically, it also may increase customers' sense of vulnerability and lower adoption rates. To demonstrate this contradiction, an exploratory field study on Facebook and secondary data about a personalized advertising campaign indicate sharp drops in click-through rates when customers realize their personal ...

  12. Are Bibliographic Management Software Search Interfaces Reliable?: A Comparison between Search Results Obtained Using Database Interfaces and the EndNote Online Search Function

    Science.gov (United States)

    Fitzgibbons, Megan; Meert, Deborah

    2010-01-01

    The use of bibliographic management software and its internal search interfaces is now pervasive among researchers. This study compares the results between searches conducted in academic databases' search interfaces versus the EndNote search interface. The results show mixed search reliability, depending on the database and type of search…

  13. Are Bibliographic Management Software Search Interfaces Reliable?: A Comparison between Search Results Obtained Using Database Interfaces and the EndNote Online Search Function

    Science.gov (United States)

    Fitzgibbons, Megan; Meert, Deborah

    2010-01-01

    The use of bibliographic management software and its internal search interfaces is now pervasive among researchers. This study compares the results between searches conducted in academic databases' search interfaces versus the EndNote search interface. The results show mixed search reliability, depending on the database and type of search…

  14. 77 FR 74826 - Notice of Intent To Seek OMB Approval To Collect Information: On-Line Architectural Barriers Act...

    Science.gov (United States)

    2012-12-18

    ... TRANSPORTATION BARRIERS COMPLIANCE BOARD Notice of Intent To Seek OMB Approval To Collect Information: On- Line... new information collection. As required by the Paperwork Reduction Act of 1995, we are providing... an information collection request package to OMB and request approval for three years. DATES:...

  15. Time-critical database condition data handling in the CMS experiment during the first data taking period

    CERN Document Server

    Di Guida, Salvatore

    2011-01-01

    Automatic, synchronous and of course reliable population of the condition databases is critical for the correct operation of the online selection as well as of the offline reconstruction and analysis of data. In this complex infrastructure, monitoring and fast detection of errors is a very challenging task. To recover the system and to put it in a safe state requires spotting a faulty situation within strict time constraints. We will describe here the system put in place in the CMS experiment to automate the processes that populate centrally the Condition Databases and make condition data promptly available both online for the high-level trigger and offline for reconstruction. The data are automatically collected using centralized jobs or are ``dropped'' by the users in dedicate services (offline and online drop-box), which synchronize them and take care of writing them into the online database. Then they are automatically streamed to the offline database, and thus are immediately acce...

  16. Collection development past and future

    CERN Document Server

    Pastine, Maureen

    2013-01-01

    With the prolific changes in the electronic environment, do you sometimes feel overwhelmed by the multiplying of electronic information resources, the different methods of access, and their combined impact on collection development? If so, Collection Development is the book to help you get a handle on what's out there! In no time at all, you'll be able to select and integrate electronic resources into collection development programs at even the most traditional of libraries! In the process, you will learn alternative approaches for dealing with electronic databases, on-line access, and fiscal

  17. User Types in Online Applications

    Directory of Open Access Journals (Sweden)

    Ion IVAN

    2011-08-01

    Full Text Available Online applications are presented in the context of information society. Online applications characteristics are analyzed. Quality characteristics are presented in relation to online applications users. Types of users for AVIO application are presented. Use cases for AVIO application are identified. The limitations of AVIO application are defined. Types of users in online applications are identified. The threedimensional matrix of access to the online application resources is built. The user type-oriented database is structured. Access management of the fields related to the database tables is analyzed. The classification of online applications users is done.

  18. Cloud Databases: A Paradigm Shift in Databases

    Directory of Open Access Journals (Sweden)

    Indu Arora

    2012-07-01

    Full Text Available Relational databases ruled the Information Technology (IT industry for almost 40 years. But last few years have seen sea changes in the way IT is being used and viewed. Stand alone applications have been replaced with web-based applications, dedicated servers with multiple distributed servers and dedicated storage with network storage. Cloud computing has become a reality due to its lesser cost, scalability and pay-as-you-go model. It is one of the biggest changes in IT after the rise of World Wide Web. Cloud databases such as Big Table, Sherpa and SimpleDB are becoming popular. They address the limitations of existing relational databases related to scalability, ease of use and dynamic provisioning. Cloud databases are mainly used for data-intensive applications such as data warehousing, data mining and business intelligence. These applications are read-intensive, scalable and elastic in nature. Transactional data management applications such as banking, airline reservation, online e-commerce and supply chain management applications are write-intensive. Databases supporting such applications require ACID (Atomicity, Consistency, Isolation and Durability properties, but these databases are difficult to deploy in the cloud. The goal of this paper is to review the state of the art in the cloud databases and various architectures. It further assesses the challenges to develop cloud databases that meet the user requirements and discusses popularly used Cloud databases.

  19. Internet Based Open Access Crystallographic Databases

    Science.gov (United States)

    Upreti, Girish; Seipel, Bjoern; Harvey, Morgan; Garrick, Will; Moeck, Peter

    2006-05-01

    Two freely accessible crystallographic databases are discussed: the Crystallographic Open Database (COD, http://crystallography.net) which contains over 37,000 crystal structures, and the Nano-Crystallography Database (NCD, http://nanocrystallography.research.pdx.edu) which we recently started to support image-based nanocrystallography and (nano) materials science education. Both databases collect crystallographic relevant information in a standardized format; the Crystallographic Information File (CIF). CIF is the standard file format adopted by the International Union of Crystallography (http://iucr.org) for the archiving and distribution of crystallographic information. A subset of the COD, the Predicted Crystallographic Online Database, allows for 3D structural displays of structural polyhedra and wireframes of approximately 2,600 entries. Since electron microscopist are interested in simple, yet technologically important materials, the crystallographic information for those materials will be included in our database. At our NCD site, entries in the COD and the NCD can be visualized in three dimensions (3D) along with (2D) lattice fringe fingerprints plots. The latter supports the identification of unknown nanocrystal phases from high-resolution transmission electron microscopy (HRTEM) images. Morphological crystal information from the database ``Bestimmungstabellen f"ur Kristalle/ ???????????? ??????????,'' (A.K. Boldyrew and W.W. Doliwo-Dobrowolsky, Zentrales Wissenschaftlichers Institute der Geologie und Sch"urfung, Leningrad/ Moscow, 1937/1939) will also be included in the NCD to support image-based nanocrystallography in 3D.

  20. Using an international p53 mutation database as a foundation for an online laboratory in an upper level undergraduate biology class.

    Science.gov (United States)

    Melloy, Patricia G

    2015-01-01

    A two-part laboratory exercise was developed to enhance classroom instruction on the significance of p53 mutations in cancer development. Students were asked to mine key information from an international database of p53 genetic changes related to cancer, the IARC TP53 database. Using this database, students designed several data mining activities to look at the changes in the p53 gene from a number of perspectives, including potential cancer-causing agents leading to particular changes and the prevalence of certain p53 variations in certain cancers. In addition, students gained a global perspective on cancer prevalence in different parts of the world. Students learned how to use the database in the first part of the exercise, and then used that knowledge to search particular cancers and cancer-causing agents of their choosing in the second part of the exercise. Students also connected the information gathered from the p53 exercise to a previous laboratory exercise looking at risk factors for cancer development. The goal of the experience was to increase student knowledge of the link between p53 genetic variation and cancer. Students also were able to walk a similar path through the website as a cancer researcher using the database to enhance bench work-based experiments with complementary large-scale database p53 variation information.

  1. It's not all about the music: Online fan communities and collecting Hard Rock Café pins

    Directory of Open Access Journals (Sweden)

    Lincoln Geraghty

    2014-06-01

    Full Text Available Previous studies of music fan culture have largely centered on the diverse range of subcultures devoted to particular genres, groups, and stars. Where studies have moved beyond the actual music and examined the fashion, concerts, and collecting ephemera such as vinyl records and posters, they have tended to remain closely allied to notions of subcultural distinction, emphasizing hierarchies of taste. This paper shifts the focus in music fan studies beyond the appreciation of the music and discusses the popular fan practice of collecting souvenir pins produced and sold by the Hard Rock Café (HRC within a framework of fan tourism. Traveling to and collecting unique pins from locations across the globe creates a fan dialogue that centers on tourism and the collecting practices associated with souvenir consumption. Collectors engage in practices such as blogging, travel writing, and administration that become important indicators of their particular expression of fandom: pin collecting. Membership requires both time and money; recording visits around the world and collecting unique pins from every café builds fans' cultural capital. This indicates an internationalization of popular fandom, with the Internet acting as a connective virtual space between local and national, personal and public physical space. The study of HRC pin collecting and its fan community suggests that HRC enthusiasts are not so because they enjoy rock music or follow any particular artist but due to the physical ephemera that they collect and the places and spaces they visit.

  2. 78 FR 25697 - Notice of Intent To Seek OMB Approval To Collect Information: On-Line Architectural Barriers Act...

    Science.gov (United States)

    2013-05-02

    ... TRANSPORTATION BARRIERS COMPLIANCE BOARD Notice of Intent To Seek OMB Approval To Collect Information: On- Line...) of a new information collection. As required by the Paperwork Reduction Act of 1995, Public Law 104-13, we are providing opportunity for public comment on this action. This proposed...

  3. Conserveermiddelen on-line

    NARCIS (Netherlands)

    Top, J.L.; Ketelaars, N.J.J.P.; Hulzebos, J.L.

    2004-01-01

    Antimicrobials Online is een Engelstalige database die wetenschappelijke informatie over natuurlijke conserveermiddelen via internet beschikbaar stelt aan de levensmiddelenindustrie. Het project is uitgevoerd door Wageningen UR-Agrotechnology & Food Innovations. Er volgt uitbreiding met traditio

  4. Conserveermiddelen on-line

    NARCIS (Netherlands)

    Top, J.L.; Ketelaars, N.J.J.P.; Hulzebos, J.L.

    2004-01-01

    Antimicrobials Online is een Engelstalige database die wetenschappelijke informatie over natuurlijke conserveermiddelen via internet beschikbaar stelt aan de levensmiddelenindustrie. Het project is uitgevoerd door Wageningen UR-Agrotechnology & Food Innovations. Er volgt uitbreiding met

  5. Scopus database: a review.

    Science.gov (United States)

    Burnham, Judy F

    2006-03-08

    The Scopus database provides access to STM journal articles and the references included in those articles, allowing the searcher to search both forward and backward in time. The database can be used for collection development as well as for research. This review provides information on the key points of the database and compares it to Web of Science. Neither database is inclusive, but complements each other. If a library can only afford one, choice must be based in institutional needs.

  6. The Danish Anaesthesia Database

    DEFF Research Database (Denmark)

    Antonsen, Kristian; Rosenstock, Charlotte Vallentin; Lundstrøm, Lars Hyldborg

    2016-01-01

    AIM OF DATABASE: The aim of the Danish Anaesthesia Database (DAD) is the nationwide collection of data on all patients undergoing anesthesia. Collected data are used for quality assurance, quality development, and serve as a basis for research projects. STUDY POPULATION: The DAD was founded in 2004...

  7. Accelerated clinical discovery using self-reported patient data collected online and a patient-matching algorithm.

    Science.gov (United States)

    Wicks, Paul; Vaughan, Timothy E; Massagli, Michael P; Heywood, James

    2011-05-01

    Patients with serious diseases may experiment with drugs that have not received regulatory approval. Online patient communities structured around quantitative outcome data have the potential to provide an observational environment to monitor such drug usage and its consequences. Here we describe an analysis of data reported on the website PatientsLikeMe by patients with amyotrophic lateral sclerosis (ALS) who experimented with lithium carbonate treatment. To reduce potential bias owing to lack of randomization, we developed an algorithm to match 149 treated patients to multiple controls (447 total) based on the progression of their disease course. At 12 months after treatment, we found no effect of lithium on disease progression. Although observational studies using unblinded data are not a substitute for double-blind randomized control trials, this study reached the same conclusion as subsequent randomized trials, suggesting that data reported by patients over the internet may be useful for accelerating clinical discovery and evaluating the effectiveness of drugs already in use.

  8. A new expectation for post-secondary librarians: Faculty status, collective agreements, and the online evidence of teaching

    DEFF Research Database (Denmark)

    Prange, Laurie

    The majority of librarians at Canadian post-secondary institutions have recently attained faculty status. However, the collective agreements of the faculty associations do not always explicitly state that librarian members participate in all three traditional faculty activities: teaching, scholar...

  9. The Online Mineral Library at the University of Minnesota

    Science.gov (United States)

    Feinberg, J. M.; Burdette, E.; Clayton, M.

    2012-12-01

    The University of Minnesota maintains a world-class mineral collection comprising over 7000 specimens, many of which are museum quality. Prof. Newton H. Winchell started the collection in the 1850s shortly after the founding of the University itself. Many of the specimens come from pioneering mineralogists such as Winchell, George F. Kunz, and Tibor Zoltai. A small fraction of the most eye-catching samples are on public display within the Department of Earth Sciences, but until recently the vast majority of the collection was housed in locked metal cabinets, which meant that the collection received very little use by students and researchers. To improve the visibility and accessibility of our mineral collection we created an elegant, database-driven website (http://mineral.esci.umn.edu/). This dynamic website is one of the more extensive of its kind and allows the collection to be used as a tool for teaching and research. The searchable, online database contains high-resolution photographs of the University's mineral collection and provides access to the complete collection. Administrators can link numerous specimens to create online "collections" that emphasize particular themes, e.g., economic mineralogy, common mineral donors, or common geographic origin. The online database has already been interwoven into courses for Earth Science majors and non-majors. Researchers are able to explore the library for mineral standards for instrument calibration or more involved experimental research. Further, the online library allows graduate students and faculty to "check out" certain mineral specimens for research, which for the first time allows us to accurately track the use of the collection. The electronic framework for the Online Mineral Library was constructed using the Drupal open source content management system. Undergraduate interns are in the process of systematically photographing each of the mineral specimens for inclusion in the Online Library. Additionally

  10. APROXIMACIÓN DE LA MUSEOLOGÍA AL ENTORNO WEB. EXHIBICIÓN ONLINE DE LA COLECCIÓN DEL MNBA / Museological approach to web space. Online Exhibition of the MNBA´s Collection

    Directory of Open Access Journals (Sweden)

    Alejandra Gabriela Panozzo Zenere

    2015-12-01

    Full Text Available La presencia en Internet del Museo Nacional de Bellas Artes de Argentina no escapa a las innovaciones tecnológicas-comunicativas que transformaron en las últimas décadas la museología en general. En consecuencia, esta institución adoptó distintas especificidades dentro del entorno virtual para poder exponer su patrimonio artístico.En este trabajo, se intentará repasar de forma preliminar y exploratoria algunas construcciones que se evidencian dentro del diseño del sitio web y las prestaciones que permite el proyecto de Google, para luego, introducirnos en la función de exhibición online de sus obras de arte como imágenes pixeles.El rasgo que presenta este tipo de patrimonio nos acerca a una manera específica de exhibición de sus colecciones en el entorno virtual. El Consejo Internacional de Museos (ICOM considera que los museos deben velar para que sus exposiciones físicas y virtuales presenten información fehaciente, conforme a las misiones, políticas y finalidades declaradas por cada institución. Por tanto, el recorrido de este trabajo plantea como objetivo analizar las implicancias y de qué manera el MNBA expone su patrimonio de manera virtual a partir de su portal www.mnba.gob.ar y desde la experiencia Google art project.  AbstractThe online presence of the Argentine National Fine Arts Museum (MNBA cannot be conceived without considering the technological and communicative innovations that have transformed museum studies over the last decades. This institution has, therefore, adopted a number of specific virtual tools to display its art heritage.This work aims to revise in a preliminary and exploratory way some constructions within website design and the tools offered by Google Art Project, in order to then focus on the online display of works of art as series of pixels.The most distinctive features of this type of heritage lead us to a specific way of exhibiting art collections in the virtual space. The International

  11. Online Sources of Competitive Intelligence.

    Science.gov (United States)

    Wagers, Robert

    1986-01-01

    Presents an approach to using online sources of information for competitor intelligence (i.e., monitoring industry and tracking activities of competitors); identifies principal sources; and suggests some ways of making use of online databases. Types and sources of information and sources and database charts are appended. Eight references are…

  12. The Danish Prostate Cancer Database

    Directory of Open Access Journals (Sweden)

    Nguyen-Nielsen M

    2016-10-01

    Full Text Available Mary Nguyen-Nielsen,1,2 Søren Høyer,3 Søren Friis,4 Steinbjørn Hansen,5 Klaus Brasso,6 Erik Breth Jakobsen,7 Mette Moe,8 Heidi Larsson,9 Mette Søgaard,9 Anne Nakano,9,10 Michael Borre1 1Department of Urology, Aarhus University Hospital, Aarhus, 2Diet, Genes and Environment, Danish Cancer Society Research Center, Copenhagen, 3Department of Pathology, Aarhus University Hospital, Aarhus, 4Danish Cancer Society Research Centre, Danish Cancer Society, Copenhagen, 5Department of Oncology, Odense University Hospital, Odense, 6Copenhagen Prostate Cancer Center and Department of Urology, Rigshospitalet, University of Copenhagen, Copenhagen, 7Department of Urology, Næstved Hospital, Næstved, 8Department of Oncology, Aalborg University Hospital, Aalborg, 9Department of Clinical Epidemiology, Aarhus University Hospital, 10Competence Centre for Health Quality and Informatics (KCKS-Vest, Aarhus, Denmark Aim of database: The Danish Prostate Cancer Database (DAPROCAdata is a nationwide clinical cancer database that has prospectively collected data on patients with incident prostate cancer in Denmark since February 2010. The overall aim of the DAPROCAdata is to improve the quality of prostate cancer care in Denmark by systematically collecting key clinical variables for the purposes of health care monitoring, quality improvement, and research. Study population: All Danish patients with histologically verified prostate cancer are included in the DAPROCAdata. Main variables: The DAPROCAdata registers clinical data and selected characteristics for patients with prostate cancer at diagnosis. Data are collected from the linkage of nationwide health registries and supplemented with online registration of key clinical variables by treating physicians at urological and oncological departments. Main variables include Gleason scores, cancer staging, prostate-specific antigen values, and therapeutic measures (active surveillance, surgery, radiotherapy, endocrine

  13. PIGD: a database for intronless genes in the Poaceae.

    Science.gov (United States)

    Yan, Hanwei; Jiang, Cuiping; Li, Xiaoyu; Sheng, Lei; Dong, Qing; Peng, Xiaojian; Li, Qian; Zhao, Yang; Jiang, Haiyang; Cheng, Beijiu

    2014-10-01

    Intronless genes are a feature of prokaryotes; however, they are widespread and unequally distributed among eukaryotes and represent an important resource to study the evolution of gene architecture. Although many databases on exons and introns exist, there is currently no cohesive database that collects intronless genes in plants into a single database. In this study, we present the Poaceae Intronless Genes Database (PIGD), a user-friendly web interface to explore information on intronless genes from different plants. Five Poaceae species, Sorghum bicolor, Zea mays, Setaria italica, Panicum virgatum and Brachypodium distachyon, are included in the current release of PIGD. Gene annotations and sequence data were collected and integrated from different databases. The primary focus of this study was to provide gene descriptions and gene product records. In addition, functional annotations, subcellular localization prediction and taxonomic distribution are reported. PIGD allows users to readily browse, search and download data. BLAST and comparative analyses are also provided through this online database, which is available at http://pigd.ahau.edu.cn/. PIGD provides a solid platform for the collection, integration and analysis of intronless genes in the Poaceae. As such, this database will be useful for subsequent bio-computational analysis in comparative genomics and evolutionary studies.

  14. A new aerosol collector for quasi on-line analysis of particulate organic matter: the Aerosol Collection Module (ACM) and first applications with a GC/MS-FID

    Science.gov (United States)

    Hohaus, T.; Trimborn, D.; Kiendler-Scharr, A.; Gensch, I.; Laumer, W.; Kammer, B.; Andres, S.; Boudries, H.; Smith, K. A.; Worsnop, D. R.; Jayne, J. T.

    2010-10-01

    In many environments organic matter significantly contributes to the composition of atmospheric aerosol particles influencing its properties. Detailed chemical characterization of ambient aerosols is critical in order to understand the formation process, composition, and properties of aerosols and facilitates source identification and relative contributions from different types of sources to ambient aerosols in the atmosphere. However, current analytical methods are far from full speciation of organic aerosols and often require sampling times of up to one week. Offline methods are also subjected to artifacts during aerosol collection and storage. In the present work a new technique for quasi on-line compound specific measurements of organic aerosol particles was developed. The Aerosol Collection Module (ACM) focuses particles into a beam which is directed to a cooled sampling surface. The sampling takes place in a high vacuum environment where the gas phase from the sample volume is removed. After collection is completed volatile and semi-volatile compounds are evaporated from the collection surface through heating and transferred to a detector. For laboratory characterization the ACM was interfaced with a Gas Chromatograph Mass Spectrometer, Flame Ionization Detector system (GC/MS-FID), abbreviated as ACM GC-MS. The particle collection efficiency, gas phase transfer efficiency, and linearity of the ACM GC-MS were determined using laboratory generated octadecane aerosols. The ACM GC-MS is linear over the investigated mass range of 10 to 100 ng and a recovery rate of 100% was found for octadecane particles. The ACM GC-MS was applied to investigate secondary organic aerosol (SOA) formed from β-pinene oxidation. Nopinone, myrtanal, myrtenol, 1-hydroxynopinone, 3-oxonopinone, 3,7-dihydroxynopinone, and bicyclo[3,1,1]hept-3-ene-2-one were found as products in the SOA. The ACM GC-MS results are compared to quartz filter samples taken in parallel to the ACM GC

  15. Assessment of the structural and functional impact of in-frame mutations of the DMD gene, using the tools included in the eDystrophin online database

    Directory of Open Access Journals (Sweden)

    Nicolas Aurélie

    2012-07-01

    Full Text Available Abstract Background Dystrophin is a large essential protein of skeletal and heart muscle. It is a filamentous scaffolding protein with numerous binding domains. Mutations in the DMD gene, which encodes dystrophin, mostly result in the deletion of one or several exons and cause Duchenne (DMD and Becker (BMD muscular dystrophies. The most common DMD mutations are frameshift mutations resulting in an absence of dystrophin from tissues. In-frame DMD mutations are less frequent and result in a protein with partial wild-type dystrophin function. The aim of this study was to highlight structural and functional modifications of dystrophin caused by in-frame mutations. Methods and results We developed a dedicated database for dystrophin, the eDystrophin database. It contains 209 different non frame-shifting mutations found in 945 patients from a French cohort and previous studies. Bioinformatics tools provide models of the three-dimensional structure of the protein at deletion sites, making it possible to determine whether the mutated protein retains the typical filamentous structure of dystrophin. An analysis of the structure of mutated dystrophin molecules showed that hybrid repeats were reconstituted at the deletion site in some cases. These hybrid repeats harbored the typical triple coiled-coil structure of native repeats, which may be correlated with better function in muscle cells. Conclusion This new database focuses on the dystrophin protein and its modification due to in-frame deletions in BMD patients. The observation of hybrid repeat reconstitution in some cases provides insight into phenotype-genotype correlations in dystrophin diseases and possible strategies for gene therapy. The eDystrophin database is freely available: http://edystrophin.genouest.org/.

  16. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein–DNA interactions

    Science.gov (United States)

    Hume, Maxwell A.; Barrera, Luis A.; Gisselbrecht, Stephen S.; Bulyk, Martha L.

    2015-01-01

    The Universal PBM Resource for Oligonucleotide Binding Evaluation (UniPROBE) serves as a convenient source of information on published data generated using universal protein-binding microarray (PBM) technology, which provides in vitro data about the relative DNA-binding preferences of transcription factors for all possible sequence variants of a length k (‘k-mers’). The database displays important information about the proteins and displays their DNA-binding specificity data in terms of k-mers, position weight matrices and graphical sequence logos. This update to the database documents the growth of UniPROBE since the last update 4 years ago, and introduces a variety of new features and tools, including a new streamlined pipeline that facilitates data deposition by universal PBM data generators in the research community, a tool that generates putative nonbinding (i.e. negative control) DNA sequences for one or more proteins and novel motifs obtained by analyzing the PBM data using the BEEML-PBM algorithm for motif inference. The UniPROBE database is available at http://uniprobe.org. PMID:25378322

  17. Online Monitoring of Induction Motors

    Energy Technology Data Exchange (ETDEWEB)

    McJunkin, Timothy R. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Agarwal, Vivek [Idaho National Lab. (INL), Idaho Falls, ID (United States); Lybeck, Nancy Jean [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2016-01-01

    The online monitoring of active components project, under the Advanced Instrumentation, Information, and Control Technologies Pathway of the Light Water Reactor Sustainability Program, researched diagnostic and prognostic models for alternating current induction motors (IM). Idaho National Laboratory (INL) worked with the Electric Power Research Institute (EPRI) to augment and revise the fault signatures previously implemented in the Asset Fault Signature Database of EPRI’s Fleet Wide Prognostic and Health Management (FW PHM) Suite software. Induction Motor diagnostic models were researched using the experimental data collected by Idaho State University. Prognostic models were explored in the set of literature and through a limited experiment with 40HP to seek the Remaining Useful Life Database of the FW PHM Suite.

  18. FINDbase: a relational database recording frequencies of genetic defects leading to inherited disorders worldwide.

    Science.gov (United States)

    van Baal, Sjozef; Kaimakis, Polynikis; Phommarinh, Manyphong; Koumbi, Daphne; Cuppens, Harry; Riccardino, Francesca; Macek, Milan; Scriver, Charles R; Patrinos, George P

    2007-01-01

    Frequency of INherited Disorders database (FINDbase) (http://www.findbase.org) is a relational database, derived from the ETHNOS software, recording frequencies of causative mutations leading to inherited disorders worldwide. Database records include the population and ethnic group, the disorder name and the related gene, accompanied by links to any corresponding locus-specific mutation database, to the respective Online Mendelian Inheritance in Man entries and the mutation together with its frequency in that population. The initial information is derived from the published literature, locus-specific databases and genetic disease consortia. FINDbase offers a user-friendly query interface, providing instant access to the list and frequencies of the different mutations. Query outputs can be either in a table or graphical format, accompanied by reference(s) on the data source. Registered users from three different groups, namely administrator, national coordinator and curator, are responsible for database curation and/or data entry/correction online via a password-protected interface. Databaseaccess is free of charge and there are no registration requirements for data querying. FINDbase provides a simple, web-based system for population-based mutation data collection and retrieval and can serve not only as a valuable online tool for molecular genetic testing of inherited disorders but also as a non-profit model for sustainable database funding, in the form of a 'database-journal'.

  19. Mathematical Notation in Bibliographic Databases.

    Science.gov (United States)

    Pasterczyk, Catherine E.

    1990-01-01

    Discusses ways in which using mathematical symbols to search online bibliographic databases in scientific and technical areas can improve search results. The representations used for Greek letters, relations, binary operators, arrows, and miscellaneous special symbols in the MathSci, Inspec, Compendex, and Chemical Abstracts databases are…

  20. The Danish Cardiac Rehabilitation Database

    Directory of Open Access Journals (Sweden)

    Zwisler AD

    2016-10-01

    The Regional Research Unit, Region Zealand, Roskilde, 19Department of Medicine, Cardiovascular Research Unit, Regional Hospital Herning, Herning, Denmark Aim of database: The Danish Cardiac Rehabilitation Database (DHRD aims to improve the quality of cardiac rehabilitation (CR to the benefit of patients with coronary heart disease (CHD.Study population: Hospitalized patients with CHD with stenosis on coronary angiography treated with percutaneous coronary intervention, coronary artery bypass grafting, or medication alone. Reporting is mandatory for all hospitals in Denmark delivering CR. The database was initially implemented in 2013 and was fully running from August 14, 2015, thus comprising data at a patient level from the latter date onward.Main variables: Patient-level data are registered by clinicians at the time of entry to CR directly into an online system with simultaneous linkage to other central patient registers. Follow-up data are entered after 6 months. The main variables collected are related to key outcome and performance indicators of CR: referral and adherence, lifestyle, patient-related outcome measures, risk factor control, and medication. Program-level online data are collected every third year.Descriptive data: Based on administrative data, approximately 14,000 patients with CHD are hospitalized at 35 hospitals annually, with 75% receiving one or more outpatient rehabilitation services by 2015. The database has not yet been running for a full year, which explains the use of approximations.Conclusion: The DHRD is an online, national quality improvement database on CR, aimed at patients with CHD. Mandatory registration of data at both patient level as well as program level is done on the database. DHRD aims to systematically monitor the quality of CR over time, in order to improve the quality of CR throughout Denmark to benefit patients. Keywords: secondary prevention, coronary heart disease, cardiovascular prevention, clinical quality registry

  1. Analysis of Characteristics and Data Collection Sources of Featured Literature Databases in Higher Schools in Yunnan%云南高校地方特色数据库的文献资源特色及其收集来源分析

    Institute of Scientific and Technical Information of China (English)

    张燕; 冯留燕; 黄芩; 胡笳; 王华平; 朱波伊; 何尔纯; 韦焘

    2013-01-01

    Objective To explore the characteristics and data collection sources of featured literature databases in universities/colleges in Yunnan in order to provide evidence for building featured literature databases. Methods Key information about three types of featured literature databases was retrieved online, which included those being constructed jointly by some universities or colleges in Yunnan, owned by universities or colleges in Yunnan, and already in use in China Academic Library and Information System ( CALIS) , respectively. Comparison was performed among these featured literature databases in regard to data characteristics and collection sources. Results Among all the featured databases being constructed, 58.8% were based on literature on local resources, 17.6% on disciplines and specialties, and 11.8% on library literature. In-use featured databases in Yunnan were mainly based on local resources and disciplines, and the data were collected within their own organizations or through multi-sources. The featured databases in CALIS were of local resources, disciplines, and people, while their data were collected mainly within their own organizations, through other organizations and multi-sources. Conclusion Yunnan featured databases are of unique characteristics, but more should be done to define Yunnan style data, while it is necessary to collect data from a wider range of sources.%目的:探讨云南高校特色数据库的文献资源特色及其收集来源,为建设特色库提供线索.方法网上收集云南部分高校在建的特色库、在用的特色库以及全国CALIS特色库的文献资源及其收集来源,并进行对比.结果云南高校在建的特色库基于地域资源者占58.8%,基于学科专业者占17.6%,而基于馆藏书刊资料者占11.8%;该省高校在用特色库的主题是基于地域资源和学科资源,资源收集来源主要是本单位和多渠道;而全国CALIS特色库的主题是地域资源、

  2. Mining novel starch-converting Glycoside Hydrolase 70 enzymes from the Nestlé Culture Collection genome database: The Lactobacillus reuteri NCC 2613 GtfB.

    Science.gov (United States)

    Gangoiti, Joana; van Leeuwen, Sander S; Meng, Xiangfeng; Duboux, Stéphane; Vafiadi, Christina; Pijning, Tjaard; Dijkhuizen, Lubbert

    2017-08-30

    The Glycoside hydrolase (GH) family 70 originally was established for glucansucrases of lactic acid bacteria (LAB) converting sucrose into α-glucan polymers. In recent years we have identified 3 subfamilies of GH70 enzymes (designated GtfB, GtfC and GtfD) as 4,6-α-glucanotransferases, cleaving (α1 → 4)-linkages in maltodextrins/starch and synthesizing new (α1 → 6)-linkages. In this work, 106 putative GtfBs were identified in the Nestlé Culture Collection genome database with ~2700 genomes, and the L. reuteri NCC 2613 one was selected for further characterization based on variations in its conserved motifs. Using amylose the L. reuteri NCC 2613 GtfB synthesizes a low-molecular-mass reuteran-like polymer consisting of linear (α1 → 4) sequences interspersed with (α1 → 6) linkages, and (α1 → 4,6) branching points. This product specificity is novel within the GtfB subfamily, mostly comprising 4,6-α-glucanotransferases synthesizing consecutive (α1 → 6)-linkages. Instead, its activity resembles that of the GtfD 4,6-α-glucanotransferases identified in non-LAB strains. This study demonstrates the potential of large-scale genome sequence data for the discovery of enzymes of interest for the food industry. The L. reuteri NCC 2613 GtfB is a valuable addition to the starch-converting GH70 enzyme toolbox. It represents a new evolutionary intermediate between families GH13 and GH70, and provides further insights into the structure-function relationships of the GtfB subfamily enzymes.

  3. Beyond Performance Data: Improving Student Help Seeking by Collecting and Displaying Influential Data in an Online Middle-School Science Curriculum

    Science.gov (United States)

    Daley, Samantha G.; Hillaire, Garron; Sutherland, LeeAnn M.

    2016-01-01

    Technology makes possible abundant new opportunities to capture and display data in online learning environments. We describe here an example of using these opportunities to improve students' use of the rich supports available in online learning environments. We describe an example of a blended learning experience that uses an online inquiry-based…

  4. An Algorithm to Self-Extract Secondary Keywords and Their Combinations Based on Abstracts Collected using Primary Keywords from Online Digital Libraries

    CERN Document Server

    Meghanathan, Natarajan; Isokpehi, Raphael; Cohly, Hari; 10.5121/ijcsit.2010.2307

    2010-01-01

    The high-level contribution of this paper is the development and implementation of an algorithm to selfextract secondary keywords and their combinations (combo words) based on abstracts collected using standard primary keywords for research areas from reputed online digital libraries like IEEE Explore, PubMed Central and etc. Given a collection of N abstracts, we arbitrarily select M abstracts (M<< N; M/N as low as 0.15) and parse each of the M abstracts, word by word. Upon the first-time appearance of a word, we query the user for classifying the word into an Accept-List or non-Accept-List. The effectiveness of the training approach is evaluated by measuring the percentage of words for which the user is queried for classification when the algorithm parses through the words of each of the M abstracts. We observed that as M grows larger, the percentage of words for which the user is queried for classification reduces drastically. After the list of acceptable words is built by parsing the M abstracts, we ...

  5. Rat Genome Database (RGD)

    Data.gov (United States)

    U.S. Department of Health & Human Services — The Rat Genome Database (RGD) is a collaborative effort between leading research institutions involved in rat genetic and genomic research to collect, consolidate,...

  6. 1988 Spitak Earthquake Database

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The 1988 Spitak Earthquake database is an extensive collection of geophysical and geological data, maps, charts, images and descriptive text pertaining to the...

  7. A new aerosol collector for quasi on-line analysis of particulate organic matter: the Aerosol Collection Module (ACM and first applications with a GC/MS-FID

    Directory of Open Access Journals (Sweden)

    T. Hohaus

    2010-10-01

    Full Text Available In many environments organic matter significantly contributes to the composition of atmospheric aerosol particles influencing its properties. Detailed chemical characterization of ambient aerosols is critical in order to understand the formation process, composition, and properties of aerosols and facilitates source identification and relative contributions from different types of sources to ambient aerosols in the atmosphere. However, current analytical methods are far from full speciation of organic aerosols and often require sampling times of up to one week. Offline methods are also subjected to artifacts during aerosol collection and storage.

    In the present work a new technique for quasi on-line compound specific measurements of organic aerosol particles was developed. The Aerosol Collection Module (ACM focuses particles into a beam which is directed to a cooled sampling surface. The sampling takes place in a high vacuum environment where the gas phase from the sample volume is removed. After collection is completed volatile and semi-volatile compounds are evaporated from the collection surface through heating and transferred to a detector.

    For laboratory characterization the ACM was interfaced with a Gas Chromatograph Mass Spectrometer, Flame Ionization Detector system (GC/MS-FID, abbreviated as ACM GC-MS. The particle collection efficiency, gas phase transfer efficiency, and linearity of the ACM GC-MS were determined using laboratory generated octadecane aerosols. The ACM GC-MS is linear over the investigated mass range of 10 to 100 ng and a recovery rate of 100% was found for octadecane particles.

    The ACM GC-MS was applied to investigate secondary organic aerosol (SOA formed from β-pinene oxidation. Nopinone, myrtanal, myrtenol, 1-hydroxynopinone, 3-oxonopinone, 3,7-dihydroxynopinone, and bicyclo[3,1,1]hept-3-ene-2-one were found as products in the SOA. The ACM GC-MS results are compared to quartz filter

  8. Comparison of best versus worst clinical outcomes for adult spinal deformity surgery: a retrospective review of a prospectively collected, multicenter database with 2-year follow-up.

    Science.gov (United States)

    Smith, Justin S; Shaffrey, Christopher I; Lafage, Virginie; Schwab, Frank; Scheer, Justin K; Protopsaltis, Themistocles; Klineberg, Eric; Gupta, Munish; Hostin, Richard; Fu, Kai-Ming G; Mundis, Gregory M; Kim, Han Jo; Deviren, Vedat; Soroceanu, Alex; Hart, Robert A; Burton, Douglas C; Bess, Shay; Ames, Christopher P

    2015-09-01

    Although recent studies suggest that average clinical outcomes are improved following surgery for selected adult spinal deformity (ASD) patients, these outcomes span a broad range. Few studies have specifically addressed factors that may predict favorable clinical outcomes. The objective of this study was to compare patients with ASD with best versus worst clinical outcomes following surgical treatment to identify distinguishing factors that may prove useful for patient counseling and optimization of clinical outcomes. This is a retrospective review of a prospectively collected, multicenter, database of consecutively enrolled patients with ASD who were treated operatively. Inclusion criteria were age > 18 years and ASD. For patients with a minimum of 2-year follow-up, those with best versus worst outcomes were compared separately based on Scoliosis Research Society-22 (SRS-22) and Oswestry Disability Index (ODI) scores. Only patients with a baseline SRS-22 ≤ 3.5 or ODI ≥ 30 were included to minimize ceiling/floor effects. Best and worst outcomes were defined for SRS-22 (≥ 4.5 and ≤ 2.5, respectively) and ODI (≤ 15 and ≥ 50, respectively). Of 257 patients who met the inclusion criteria, 227 (88%) had complete baseline and 2-year follow-up SRS-22 and ODI outcomes scores and radiographic imaging and were analyzed in the present study. Of these 227 patients, 187 had baseline SRS-22 scores ≤ 3.5, and 162 had baseline ODI scores ≥ 30. Forthe SRS-22, best and worst outcomes criteria were met at follow-up for 25 and 27 patients, respectively. For the ODI, best and worst outcomes criteria were met at follow-up for 43 and 51 patients, respectively. With respect to the SRS-22, compared with best outcome patients, those with worst outcomes had higher baseline SRS-22 scores (p best-fit multivariate model for SRS-22 included baseline SRS-22 (p = 0.033), baseline depression (p = 0.012), and complications (p = 0.030). With respect to the ODI, compared with best

  9. Danish Gynecological Cancer Database

    DEFF Research Database (Denmark)

    Sørensen, Sarah Mejer; Bjørn, Signe Frahm; Jochumsen, Kirsten Marie

    2016-01-01

    AIM OF DATABASE: The Danish Gynecological Cancer Database (DGCD) is a nationwide clinical cancer database and its aim is to monitor the treatment quality of Danish gynecological cancer patients, and to generate data for scientific purposes. DGCD also records detailed data on the diagnostic measures...... is the registration of oncological treatment data, which is incomplete for a large number of patients. CONCLUSION: The very complete collection of available data from more registries form one of the unique strengths of DGCD compared to many other clinical databases, and provides unique possibilities for validation...

  10. KADoNiS-p: The Astrophysical p-Process Database

    Energy Technology Data Exchange (ETDEWEB)

    Szücs, T., E-mail: szucs.tamas@atomki.mta.hu [Institute for Nuclear Research (MTA Atomki), Debrecen-H-4001, PO Box 51 (Hungary); Dillmann, I. [GSI Helmholtzzentrum für Schwerionenforschung GmbH, Darmstadt (Germany); II. Physikalisches Institut, Justus-Liebig-Universität, Giessen (Germany); Plag, R. [GSI Helmholtzzentrum für Schwerionenforschung GmbH, Darmstadt (Germany); Institut für Angewandte Physik, Goethe-Universität, Frankfurt am Main (Germany); Fülöp, Zs. [Institute for Nuclear Research (MTA Atomki), Debrecen-H-4001, PO Box 51 (Hungary)

    2014-06-15

    The KADoNiS-p project is an online database for cross sections relevant to the p-process. All existing experimental data was collected and reviewed. With this contribution a user-friendly database using the KADoNiS (Karlsruhe Astrophysical Database of Nucleosynthesis in Stars) framework is launched, including all available experimental data from (p,γ), (p,n), (p,α), (α,γ), (α,n) and (α,p) reactions in or close to the respective Gamow window with cut-off date of August 2012 ( (http://www.kadonis.org/pprocess))

  11. KADoNiS-$p$: The astrophysical $p$-process database

    CERN Document Server

    Szücs, T; Plag, R; Fülöp, Zs

    2015-01-01

    The KADoNiS-$p$ project is an online database for cross sections relevant to the $p$-process. All existing experimental data was collected and reviewed. With this contribution a user-friendly database using the KADoNiS (Karlsruhe Astrophysical Database of Nucleosynthesis in Stars) framework is launched, including all available experimental data from (p,$\\gamma$), (p,n), (p,$\\alpha$), ($\\alpha$,$\\gamma$), ($\\alpha$,n) and ($\\alpha$,p) reactions in or close to the respective Gamow window with cut-off date of August 2012 (www.kadonis.org/pprocess).

  12. Jay's Collectibles

    Science.gov (United States)

    Cappel, James J.; Gillman, Jason R., Jr.

    2011-01-01

    There is growing interest in collectibles of many types, as indicated by the popularity of television programs such as the History Channel's "Pawn Stars" and "American Pickers" and the Public Broadcasting Service's "Antiques Road Show." The availability of online auction sites such as eBay has enabled many people to collect items of interest as a…

  13. The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes

    Science.gov (United States)

    Galperin, Michael Y.; Fernández-Suárez, Xosé M.; Rigden, Daniel J.

    2017-01-01

    This year's Database Issue of Nucleic Acids Research contains 152 papers that include descriptions of 54 new databases and update papers on 98 databases, of which 16 have not been previously featured in NAR. As always, these databases cover a broad range of molecular biology subjects, including genome structure, gene expression and its regulation, proteins, protein domains, and protein–protein interactions. Following the recent trend, an increasing number of new and established databases deal with the issues of human health, from cancer-causing mutations to drugs and drug targets. In accordance with this trend, three recently compiled databases that have been selected by NAR reviewers and editors as ‘breakthrough’ contributions, denovo-db, the Monarch Initiative, and Open Targets, cover human de novo gene variants, disease-related phenotypes in model organisms, and a bioinformatics platform for therapeutic target identification and validation, respectively. We expect these databases to attract the attention of numerous researchers working in various areas of genetics and genomics. Looking back at the past 12 years, we present here the ‘golden set’ of databases that have consistently served as authoritative, comprehensive, and convenient data resources widely used by the entire community and offer some lessons on what makes a successful database. The Database Issue is freely available online at the https://academic.oup.com/nar web site. An updated version of the NAR Molecular Biology Database Collection is available at http://www.oxfordjournals.org/nar/database/a/. PMID:28053160

  14. Relational databases

    CERN Document Server

    Bell, D A

    1986-01-01

    Relational Databases explores the major advances in relational databases and provides a balanced analysis of the state of the art in relational databases. Topics covered include capture and analysis of data placement requirements; distributed relational database systems; data dependency manipulation in database schemata; and relational database support for computer graphics and computer aided design. This book is divided into three sections and begins with an overview of the theory and practice of distributed systems, using the example of INGRES from Relational Technology as illustration. The

  15. PADB : Published Association Database

    Directory of Open Access Journals (Sweden)

    Lee Jin-Sung

    2007-09-01

    Full Text Available Abstract Background Although molecular pathway information and the International HapMap Project data can help biomedical researchers to investigate the aetiology of complex diseases more effectively, such information is missing or insufficient in current genetic association databases. In addition, only a few of the environmental risk factors are included as gene-environment interactions, and the risk measures of associations are not indexed in any association databases. Description We have developed a published association database (PADB; http://www.medclue.com/padb that includes both the genetic associations and the environmental risk factors available in PubMed database. Each genetic risk factor is linked to a molecular pathway database and the HapMap database through human gene symbols identified in the abstracts. And the risk measures such as odds ratios or hazard ratios are extracted automatically from the abstracts when available. Thus, users can review the association data sorted by the risk measures, and genetic associations can be grouped by human genes or molecular pathways. The search results can also be saved to tab-delimited text files for further sorting or analysis. Currently, PADB indexes more than 1,500,000 PubMed abstracts that include 3442 human genes, 461 molecular pathways and about 190,000 risk measures ranging from 0.00001 to 4878.9. Conclusion PADB is a unique online database of published associations that will serve as a novel and powerful resource for reviewing and interpreting huge association data of complex human diseases.

  16. Hazard Analysis Database Report

    CERN Document Server

    Grams, W H

    2000-01-01

    The Hazard Analysis Database was developed in conjunction with the hazard analysis activities conducted in accordance with DOE-STD-3009-94, Preparation Guide for U S . Department of Energy Nonreactor Nuclear Facility Safety Analysis Reports, for HNF-SD-WM-SAR-067, Tank Farms Final Safety Analysis Report (FSAR). The FSAR is part of the approved Authorization Basis (AB) for the River Protection Project (RPP). This document describes, identifies, and defines the contents and structure of the Tank Farms FSAR Hazard Analysis Database and documents the configuration control changes made to the database. The Hazard Analysis Database contains the collection of information generated during the initial hazard evaluations and the subsequent hazard and accident analysis activities. The Hazard Analysis Database supports the preparation of Chapters 3 ,4 , and 5 of the Tank Farms FSAR and the Unreviewed Safety Question (USQ) process and consists of two major, interrelated data sets: (1) Hazard Analysis Database: Data from t...

  17. Biofuel Database

    Science.gov (United States)

    Biofuel Database (Web, free access)   This database brings together structural, biological, and thermodynamic data for enzymes that are either in current use or are being considered for use in the production of biofuels.

  18. Onzekere databases

    NARCIS (Netherlands)

    van Keulen, Maurice

    Een recente ontwikkeling in het databaseonderzoek betret zogenaamde 'onzekere databases'. Dit artikel beschrijft wat onzekere databases zijn, hoe ze gebruikt kunnen worden en welke toepassingen met name voordeel zouden kunnen hebben van deze technologie.

  19. Community Database

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This excel spreadsheet is the result of merging at the port level of several of the in-house fisheries databases in combination with other demographic databases such...

  20. Database Administrator

    Science.gov (United States)

    Moore, Pam

    2010-01-01

    The Internet and electronic commerce (e-commerce) generate lots of data. Data must be stored, organized, and managed. Database administrators, or DBAs, work with database software to find ways to do this. They identify user needs, set up computer databases, and test systems. They ensure that systems perform as they should and add people to the…

  1. Database Administrator

    Science.gov (United States)

    Moore, Pam

    2010-01-01

    The Internet and electronic commerce (e-commerce) generate lots of data. Data must be stored, organized, and managed. Database administrators, or DBAs, work with database software to find ways to do this. They identify user needs, set up computer databases, and test systems. They ensure that systems perform as they should and add people to the…

  2. Enhancing User Experience through Emotional Interaction: Determining Users' Interests in Online Art Collections Using AMARA (Affective Museum of Art Resource Agent)

    Science.gov (United States)

    Park, S. Joon

    2013-01-01

    The need for emotional interaction has already influenced various disciplines and industries, and online museums represent a domain where providing emotional interactions could have a significant impact. Today, online museums lack the appropriate affective and hedonic values necessary to engage art enthusiasts on an emotional level. To address…

  3. Enhancing User Experience through Emotional Interaction: Determining Users' Interests in Online Art Collections Using AMARA (Affective Museum of Art Resource Agent)

    Science.gov (United States)

    Park, S. Joon

    2013-01-01

    The need for emotional interaction has already influenced various disciplines and industries, and online museums represent a domain where providing emotional interactions could have a significant impact. Today, online museums lack the appropriate affective and hedonic values necessary to engage art enthusiasts on an emotional level. To address…

  4. Flybrain neuron database: a comprehensive database system of the Drosophila brain neurons.

    Science.gov (United States)

    Shinomiya, Kazunori; Matsuda, Keiji; Oishi, Takao; Otsuna, Hideo; Ito, Kei

    2011-04-01

    The long history of neuroscience has accumulated information about numerous types of neurons in the brain of various organisms. Because such neurons have been reported in diverse publications without controlled format, it is not easy to keep track of all the known neurons in a particular nervous system. To address this issue we constructed an online database called Flybrain Neuron Database (Flybrain NDB), which serves as a platform to collect and provide information about all the types of neurons published so far in the brain of Drosophila melanogaster. Projection patterns of the identified neurons in diverse areas of the brain were recorded in a unified format, with text-based descriptions as well as images and movies wherever possible. In some cases projection sites and the distribution of the post- and presynaptic sites were determined with greater detail than described in the original publication. Information about the labeling patterns of various antibodies and expression driver strains to visualize identified neurons are provided as a separate sub-database. We also implemented a novel visualization tool with which users can interactively examine three-dimensional reconstruction of the confocal serial section images with desired viewing angles and cross sections. Comprehensive collection and versatile search function of the anatomical information reported in diverse publications make it possible to analyze possible connectivity between different brain regions. We analyzed the preferential connectivity among optic lobe layers and the plausible olfactory sensory map in the lateral horn to show the usefulness of such a database.

  5. Rapid Response Tools and Datasets for Post-fire Erosion Modeling: An Online Database to Support Post-fire Erosion Modeling

    Science.gov (United States)

    Miller, M. E.; Russel, A. M.; Billmire, M.; Endsley, K.; Elliot, W. E.; Robichaud, P. R.; MacDonald, L. H.; Renschler, C. S.

    2013-12-01

    Once the danger posed by an active wildfire has passed, land managers must rapidly assess risks posed by post-fire runoff and erosion due to fire-induced changes in soil properties and the loss of surface cover. Post-fire assessments and proposals to mitigate risks to downstream areas due to flooding, erosion, and sedimentation are typically undertaken by interdisciplinary Burned Area Emergency Response (BAER) teams. One of the first and most important priorities of a BAER team is the development of a burn severity map that reflects the fire-induced changes in both vegetative cover and soils. Currently these maps are known as BARC (Burned Area Reflectance Classification) maps and they are generated from multi-spectral remote sensing data. BAER teams also have access to many erosion modeling tools and datasets, but process-based, spatially explicit models are currently under-utilized relative to simpler, lumped models because they are more difficult to set up and they require the preparation of spatially-explicit data layers such as digital elevation models (DEM), soils, and land cover. We are working to make spatially-explicit modeling easier by preparing large-scale spatial data sets that can be rapidly combined with burn severity maps and then used to quickly run more accurate, process-based models for spatially explicit predictions of post-fire erosion and runoff. A prototype database consisting of 30-m DEM, soil, land cover, and Monitoring Trends in Burn Severity (MTBS) maps for Colorado has been created for use in GeoWEPP (Geo-spatial interface for the Water Erosion Prediction Project) with Disturbed WEPP parameters developed for post-fire conditions. Additional soil data layers have been gathered to support a spatial empirical debris flow model that also utilizes BARC maps. Future plans include developing the dataset to support other models commonly used by BAER teams. The importance of preparing spatial data ahead of time can be illustrated with two

  6. SOME ASPECTS REGARDING THE INTERNATIONAL DATABASES NOWADAYS

    Directory of Open Access Journals (Sweden)

    Emilian M. DOBRESCU

    2015-01-01

    Full Text Available A national database (NDB or an international one (abbreviated IDB, also named often as “data bank”, represents a method of storing some information and data on an external device (a storage device, with the possibility of an easy extension or an easy way to quickly find these information. Therefore, through IDB we don`t only understand a bibliometric or bibliographic index, which is a collection of references, that normally represents the “soft”, but also the respective IDB “hard”, which is the support and the storage technology. Usually, a database – a very comprehensive notion in the computer’s science – is a bibliographic index, compiled with specific purpose, objectives and means. In reality, the national and international databases are operated through management systems, usually electronic and informational, based on advanced manipulation technologies in the virtual space. On line encyclopedias can also be considered and are important international database (IDB. WorldCat, for example, is a world catalogue, that included the identification data for the books within circa 71.000 libraries in 112 countries, data classified through Online Computer Library Center (OCLC, with the participation of the libraries in the respective countries, especially of those that are national library.

  7. Database Description - DMPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us DMPD Database Description General information of database Database name DMPD Alternative nam...e Dynamic Macrophage Pathway CSML Database DOI 10.18908/lsdba.nbdc00558-000 Creator Creator Name: Masao Naga...ty of Tokyo 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639 Tel: +81-3-5449-5615 FAX: +83-3-5449-5442 E-mail: Database...606 Taxonomy Name: Mammalia Taxonomy ID: 40674 Database description DMPD collects... pathway models of transcriptional regulation and signal transduction in CSML format for dymamic simulation base

  8. Danish Gynecological Cancer Database

    DEFF Research Database (Denmark)

    Sørensen, Sarah Mejer; Bjørn, Signe Frahm; Jochumsen, Kirsten Marie;

    2016-01-01

    AIM OF DATABASE: The Danish Gynecological Cancer Database (DGCD) is a nationwide clinical cancer database and its aim is to monitor the treatment quality of Danish gynecological cancer patients, and to generate data for scientific purposes. DGCD also records detailed data on the diagnostic measures...... for gynecological cancer. STUDY POPULATION: DGCD was initiated January 1, 2005, and includes all patients treated at Danish hospitals for cancer of the ovaries, peritoneum, fallopian tubes, cervix, vulva, vagina, and uterus, including rare histological types. MAIN VARIABLES: DGCD data are organized within separate...... Danish personal identification number (CPR number). DESCRIPTIVE DATA: Data from DGCD and registers are available online in the Statistical Analysis Software portal. The DGCD forms cover almost all possible clinical variables used to describe gynecological cancer courses. The only limitation...

  9. Specialist Bibliographic Databases.

    Science.gov (United States)

    Gasparyan, Armen Yuri; Yessirkepov, Marlen; Voronov, Alexander A; Trukhachev, Vladimir I; Kostyukova, Elena I; Gerasimov, Alexey N; Kitas, George D

    2016-05-01

    Specialist bibliographic databases offer essential online tools for researchers and authors who work on specific subjects and perform comprehensive and systematic syntheses of evidence. This article presents examples of the established specialist databases, which may be of interest to those engaged in multidisciplinary science communication. Access to most specialist databases is through subscription schemes and membership in professional associations. Several aggregators of information and database vendors, such as EBSCOhost and ProQuest, facilitate advanced searches supported by specialist keyword thesauri. Searches of items through specialist databases are complementary to those through multidisciplinary research platforms, such as PubMed, Web of Science, and Google Scholar. Familiarizing with the functional characteristics of biomedical and nonbiomedical bibliographic search tools is mandatory for researchers, authors, editors, and publishers. The database users are offered updates of the indexed journal lists, abstracts, author profiles, and links to other metadata. Editors and publishers may find particularly useful source selection criteria and apply for coverage of their peer-reviewed journals and grey literature sources. These criteria are aimed at accepting relevant sources with established editorial policies and quality controls.

  10. The World Bacterial Biogeography and Biodiversity through Databases: A Case Study of NCBI Nucleotide Database and GBIF Database

    OpenAIRE

    Okba Selama; Phillip James; Farida Nateche; Wellington, Elizabeth M. H.; Hocine Hacène

    2013-01-01

    Databases are an essential tool and resource within the field of bioinformatics. The primary aim of this study was to generate an overview of global bacterial biodiversity and biogeography using available data from the two largest public online databases, NCBI Nucleotide and GBIF. The secondary aim was to highlight the contribution each geographic area has to each database. The basis for data analysis of this study was the metadata provided by both databases, mainly, the taxonomy and the geog...

  11. The Astrobiology Habitable Environments Database (AHED)

    Science.gov (United States)

    Lafuente, B.; Stone, N.; Downs, R. T.; Blake, D. F.; Bristow, T.; Fonda, M.; Pires, A.

    2015-12-01

    The Astrobiology Habitable Environments Database (AHED) is a central, high quality, long-term searchable repository for archiving and collaborative sharing of astrobiologically relevant data, including, morphological, textural and contextural images, chemical, biochemical, isotopic, sequencing, and mineralogical information. The aim of AHED is to foster long-term innovative research by supporting integration and analysis of diverse datasets in order to: 1) help understand and interpret planetary geology; 2) identify and characterize habitable environments and pre-biotic/biotic processes; 3) interpret returned data from present and past missions; 4) provide a citable database of NASA-funded published and unpublished data (after an agreed-upon embargo period). AHED uses the online open-source software "The Open Data Repository's Data Publisher" (ODR - http://www.opendatarepository.org) [1], which provides a user-friendly interface that research teams or individual scientists can use to design, populate and manage their own database according to the characteristics of their data and the need to share data with collaborators or the broader scientific community. This platform can be also used as a laboratory notebook. The database will have the capability to import and export in a variety of standard formats. Advanced graphics will be implemented including 3D graphing, multi-axis graphs, error bars, and similar scientific data functions together with advanced online tools for data analysis (e. g. the statistical package, R). A permissions system will be put in place so that as data are being actively collected and interpreted, they will remain proprietary. A citation system will allow research data to be used and appropriately referenced by other researchers after the data are made public. This project is supported by the Science-Enabling Research Activity (SERA) and NASA NNX11AP82A, Mars Science Laboratory Investigations. [1] Nate et al. (2015) AGU, submitted.

  12. The Danish Fetal Medicine database

    DEFF Research Database (Denmark)

    Ekelund, Charlotte; Kopp, Tine Iskov; Tabor, Ann

    2016-01-01

    trimester ultrasound scan performed at all public hospitals in Denmark are registered in the database. Main variables/descriptive data: Data on maternal characteristics, ultrasonic, and biochemical variables are continuously sent from the fetal medicine units’Astraia databases to the central database via...... analyses are sent to the database. Conclusion: It has been possible to establish a fetal medicine database, which monitors first-trimester screening for chromosomal abnormalities and second-trimester screening for major fetal malformations with the input from already collected data. The database...

  13. The LHCb configuration database

    CERN Document Server

    Abadie, L; Van Herwijnen, Eric; Jacobsson, R; Jost, B; Neufeld, N

    2005-01-01

    The aim of the LHCb configuration database is to store information about all the controllable devices of the detector. The experiment's control system (that uses PVSS ) will configure, start up and monitor the detector from the information in the configuration database. The database will contain devices with their properties, connectivity and hierarchy. The ability to store and rapidly retrieve huge amounts of data, and the navigability between devices are important requirements. We have collected use cases to ensure the completeness of the design. Using the entity relationship modelling technique we describe the use cases as classes with attributes and links. We designed the schema for the tables using relational diagrams. This methodology has been applied to the TFC (switches) and DAQ system. Other parts of the detector will follow later. The database has been implemented using Oracle to benefit from central CERN database support. The project also foresees the creation of tools to populate, maintain, and co...

  14. Online Support Service Quality, Online Learning Acceptance, and Student Satisfaction

    Science.gov (United States)

    Lee, Jung-Wan

    2010-01-01

    This paper examines potential differences between Korean and American students in terms of their perception levels regarding online education support service quality, online learning acceptance, and satisfaction. Eight hundred and seventy-two samples, which were collected from students in online classes in the United States and Korea, were…

  15. Online Support Service Quality, Online Learning Acceptance, and Student Satisfaction

    Science.gov (United States)

    Lee, Jung-Wan

    2010-01-01

    This paper examines potential differences between Korean and American students in terms of their perception levels regarding online education support service quality, online learning acceptance, and satisfaction. Eight hundred and seventy-two samples, which were collected from students in online classes in the United States and Korea, were…

  16. LactMed: New NLM Database on Drugs and Lactation

    Science.gov (United States)

    ... NIH LactMed: New NLM Database on Drugs and Lactation Past Issues / Summer 2006 Table of Contents For ... free online database with information on drugs and lactation, is one of the newest additions to the ...

  17. Content Evaluation of Textual CD-ROM and Web Databases. Database Searching Series.

    Science.gov (United States)

    Jacso, Peter

    This book provides guidelines for evaluating a variety of database types, including abstracting and indexing, directory, full-text, and page-image databases available in online and/or CD-ROM formats. The book discusses the purpose and techniques of comparing and evaluating the most important characteristics of textual databases, such as their…

  18. Exploring Natural Products from the Biodiversity of Pakistan for Computational Drug Discovery Studies: Collection, Optimization, Design and Development of A Chemical Database (ChemDP).

    Science.gov (United States)

    Mirza, Shaher Bano; Bokhari, Habib; Fatmi, Muhammad Qaiser

    2015-01-01

    Pakistan possesses a rich and vast source of natural products (NPs). Some of these secondary metabolites have been identified as potent therapeutic agents. However, the medicinal usage of most of these compounds has not yet been fully explored. The discoveries for new scaffolds of NPs as inhibitors of certain enzymes or receptors using advanced computational drug discovery approaches are also limited due to the unavailability of accurate 3D structures of NPs. An organized database incorporating all relevant information, therefore, can facilitate to explore the medicinal importance of the metabolites from Pakistani Biodiversity. The Chemical Database of Pakistan (ChemDP; release 01) is a fully-referenced, evolving, web-based, virtual database which has been designed and developed to introduce natural products (NPs) and their derivatives from the biodiversity of Pakistan to Global scientific communities. The prime aim is to provide quality structures of compounds with relevant information for computer-aided drug discovery studies. For this purpose, over 1000 NPs have been identified from more than 400 published articles, for which 2D and 3D molecular structures have been generated with a special focus on their stereochemistry, where applicable. The PM7 semiempirical quantum chemistry method has been used to energy optimize the 3D structure of NPs. The 2D and 3D structures can be downloaded as .sdf, .mol, .sybyl, .mol2, and .pdb files - readable formats by many chemoinformatics/bioinformatics software packages. Each entry in ChemDP contains over 100 data fields representing various molecular, biological, physico-chemical and pharmacological properties, which have been properly documented in the database for end users. These pieces of information have been either manually extracted from the literatures or computationally calculated using various computational tools. Cross referencing to a major data repository i.e. ChemSpider has been made available for overlapping

  19. Right Here Right Now: Developing an understanding of responses to smoking policy developments using online data collection in near to real time

    Directory of Open Access Journals (Sweden)

    Gillian Fergie

    2015-10-01

    Full Text Available Background: Health policymakers require timely evidence to inform decision-making, however, rapid social change often outpaces the capacity of traditional approaches to research to produce meaningful insights. The pervasion of mobile technologies and internet access offers opportunities for capturing context specific and near real-time data on people’s perceptions, behaviours and everyday experiences that could usefully inform decision-making. The Right Here Right Now pilot study was established to provide insights into public responses to, and lived experiences of, contemporary social and health issues. From May to October 2015, a cohort of 180 adults living in Glasgow were asked weekly questions. These questions were developed with decision-makers working in health and social policy or in response to topical newsworthy public health issues that arose. The questions were delivered through an online system and allowed participants to answer directly by website, SMS or post. Aim: An issue that was of high public health policy interest and debate during this period was the need for further tobacco and nicotine control. The aim of this study was to explore the potential of using an online data collection system with a cohort of Glasgow residents to provide rapid insights into public opinion on such policy developments. Method: Three smoking/vaping related questions were sent out to Right Here Right Now participants over the course of the study. The questions were in four parts, first a multiple choice question and then three qualitative follow-up questions based on participants’ responses to part one. The questions were developed with stakeholders working in health advocacy and policy development. They focused on: perceptions of the pervasion of e-cigarettes; legislation on smoking in cars carrying children; and reflections on ten years of the ‘smoking ban’ in enclosed public places. Results: The response rate ranged from 45% to 55% (65

  20. Georeferencing of museum collections: A review of problems and automated tools, and the methodology developed by the Mountain and Plains Spatio-Temporal Database-Informatics Initiative (Mapstedi)

    OpenAIRE

    Murphy, Paul C.; Guralnick, Robert P.; Glaubitz, Robert; Neufeld, David; Ryan, J. Allen

    2004-01-01

    The vast majority of locality descriptions associated with biological specimens housed in natural history museums lack the geographic coordinates required for computer-based geographic analyses. Assigning such coordinates to existing specimen records is a process called retrospective georeferencing. The georeferencing of biological collections makes those collections more valuable by allowing them to be used in spatially explicit biodiversity analyses. Here we review some of the most common p...

  1. Database Manager

    Science.gov (United States)

    Martin, Andrew

    2010-01-01

    It is normal practice today for organizations to store large quantities of records of related information as computer-based files or databases. Purposeful information is retrieved by performing queries on the data sets. The purpose of DATABASE MANAGER is to communicate to students the method by which the computer performs these queries. This…

  2. Searching Chemical Abstracts Online in Undergraduate Chemistry.

    Science.gov (United States)

    Krumpolc, Miroslav; And Others

    1987-01-01

    Discusses the advantages of conducting online computer searches of "Chemical Abstracts." Introduces the logical sequences involved in searching an online database. Explains Boolean logic, proximity operators, truncation, searchable fields, and command language, as they relate to the use of online searches in undergraduate chemistry…

  3. The Chandra Bibliography Database

    Science.gov (United States)

    Rots, A. H.; Winkelman, S. L.; Paltani, S.; Blecksmith, S. E.; Bright, J. D.

    2004-07-01

    Early in the mission, the Chandra Data Archive started the development of a bibliography database, tracking publications in refereed journals and on-line conference proceedings that are based on Chandra observations, allowing our users to link directly to articles in the ADS from our archive, and to link to the relevant data in the archive from the ADS entries. Subsequently, we have been working closely with the ADS and other data centers, in the context of the ADEC-ITWG, on standardizing the literature-data linking. We have also extended our bibliography database to include all Chandra-related articles and we are also keeping track of the number of citations of each paper. Obviously, in addition to providing valuable services to our users, this database allows us to extract a wide variety of statistical information. The project comprises five components: the bibliography database-proper, a maintenance database, an interactive maintenance tool, a user browsing interface, and a web services component for exchanging information with the ADS. All of these elements are nearly mission-independent and we intend make the package as a whole available for use by other data centers. The capabilities thus provided represent support for an essential component of the Virtual Observatory.

  4. Database Migration for Command and Control

    Science.gov (United States)

    2002-11-01

    resulting in an estimated workload increase of 26 man-years, which includes the impacts to users worldwide. 2 MY for SPOC 24+ MY for Users...The unit-level TBMCS is not online with common TBMCS databases, MIDB and AODB, but instead copies the databases for their use. PACAF is developing...SERVICES Operating System Services (Unix, NT) and Windowing (X, Motif, NT)K ER N EL MCG&I Alerts OnLine Help Correlation Office Automation Logistics

  5. AMYPdb: A database dedicated to amyloid precursor proteins

    Directory of Open Access Journals (Sweden)

    Delamarche Christian

    2008-06-01

    Full Text Available Abstract Background Misfolding and aggregation of proteins into ordered fibrillar structures is associated with a number of severe pathologies, including Alzheimer's disease, prion diseases, and type II diabetes. The rapid accumulation of knowledge about the sequences and structures of these proteins allows using of in silico methods to investigate the molecular mechanisms of their abnormal conformational changes and assembly. However, such an approach requires the collection of accurate data, which are inconveniently dispersed among several generalist databases. Results We therefore created a free online knowledge database (AMYPdb dedicated to amyloid precursor proteins and we have performed large scale sequence analysis of the included data. Currently, AMYPdb integrates data on 31 families, including 1,705 proteins from nearly 600 organisms. It displays links to more than 2,300 bibliographic references and 1,200 3D-structures. A Wiki system is available to insert data into the database, providing a sharing and collaboration environment. We generated and analyzed 3,621 amino acid sequence patterns, reporting highly specific patterns for each amyloid family, along with patterns likely to be involved in protein misfolding and aggregation. Conclusion AMYPdb is a comprehensive online database aiming at the centralization of bioinformatic data regarding all amyloid proteins and their precursors. Our sequence pattern discovery and analysis approach unveiled protein regions of significant interest. AMYPdb is freely accessible 1.

  6. CEBS: a comprehensive annotated database of toxicological data

    Science.gov (United States)

    Lea, Isabel A.; Gong, Hui; Paleja, Anand; Rashid, Asif; Fostel, Jennifer

    2017-01-01

    The Chemical Effects in Biological Systems database (CEBS) is a comprehensive and unique toxicology resource that compiles individual and summary animal data from the National Toxicology Program (NTP) testing program and other depositors into a single electronic repository. CEBS has undergone significant updates in recent years and currently contains over 11 000 test articles (exposure agents) and over 8000 studies including all available NTP carcinogenicity, short-term toxicity and genetic toxicity studies. Study data provided to CEBS are manually curated, accessioned and subject to quality assurance review prior to release to ensure high quality. The CEBS database has two main components: data collection and data delivery. To accommodate the breadth of data produced by NTP, the CEBS data collection component is an integrated relational design that allows the flexibility to capture any type of electronic data (to date). The data delivery component of the database comprises a series of dedicated user interface tables containing pre-processed data that support each component of the user interface. The user interface has been updated to include a series of nine Guided Search tools that allow access to NTP summary and conclusion data and larger non-NTP datasets. The CEBS database can be accessed online at http://www.niehs.nih.gov/research/resources/databases/cebs/. PMID:27899660

  7. Health and Environmental Research Online (HERO) database

    Data.gov (United States)

    U.S. Environmental Protection Agency — HERO contains the key studies EPA uses to develop environmental risk assessments for the public. EPA uses risk assessments to characterize the nature and magnitude...

  8. Genome databases

    Energy Technology Data Exchange (ETDEWEB)

    Courteau, J.

    1991-10-11

    Since the Genome Project began several years ago, a plethora of databases have been developed or are in the works. They range from the massive Genome Data Base at Johns Hopkins University, the central repository of all gene mapping information, to small databases focusing on single chromosomes or organisms. Some are publicly available, others are essentially private electronic lab notebooks. Still others limit access to a consortium of researchers working on, say, a single human chromosome. An increasing number incorporate sophisticated search and analytical software, while others operate as little more than data lists. In consultation with numerous experts in the field, a list has been compiled of some key genome-related databases. The list was not limited to map and sequence databases but also included the tools investigators use to interpret and elucidate genetic data, such as protein sequence and protein structure databases. Because a major goal of the Genome Project is to map and sequence the genomes of several experimental animals, including E. coli, yeast, fruit fly, nematode, and mouse, the available databases for those organisms are listed as well. The author also includes several databases that are still under development - including some ambitious efforts that go beyond data compilation to create what are being called electronic research communities, enabling many users, rather than just one or a few curators, to add or edit the data and tag it as raw or confirmed.

  9. František Nábělek's Iter Turcico-Persicum 1909-1910 - database and digitized herbarium collection.

    Science.gov (United States)

    Kempa, Matúš; Edmondson, John; Lack, Hans Walter; Smatanová, Janka; Marhold, Karol

    2016-01-01

    The Czech botanist František Nábělek (1884-1965) explored the Middle East in 1909-1910, visiting what are now Israel, Palestine, Jordan, Syria, Lebanon, Iraq, Bahrain, Iran and Turkey. He described four new genera, 78 species, 69 varieties and 38 forms of vascular plants, most of these in his work Iter Turcico-Persicum (1923-1929). The main herbarium collection of Iter Turcico-Persicum comprises 4163 collection numbers (some with duplicates), altogether 6465 specimens. It is currently deposited in the herbarium SAV. In addition, some fragments and duplicates are found in B, E, W and WU. The whole collection at SAV was recently digitized and both images and metadata are available via web portal www.nabelek.sav.sk, and through JSTOR Global Plants and the Biological Collection Access Service. Most localities were georeferenced and the web portal provides a mapping facility. Annotation of specimens is available via the AnnoSys facility. For each specimen a CETAF stable identifier is provided enabling the correct reference to the image and metadata.

  10. František Nábělek’s Iter Turcico-Persicum 1909–1910 – database and digitized herbarium collection

    Directory of Open Access Journals (Sweden)

    Matúš Kempa

    2016-12-01

    Full Text Available The Czech botanist František Nábělek (1884−1965 explored the Middle East in 1909-1910, visiting what are now Israel, Palestine, Jordan, Syria, Lebanon, Iraq, Bahrain, Iran and Turkey. He described four new genera, 78 species, 69 varieties and 38 forms of vascular plants, most of these in his work Iter Turcico-Persicum (1923−1929. The main herbarium collection of Iter Turcico-Persicum comprises 4163 collection numbers (some with duplicates, altogether 6465 specimens. It is currently deposited in the herbarium SAV. In addition, some fragments and duplicates are found in B, E, W and WU. The whole collection at SAV was recently digitized and both images and metadata are available via web portal www.nabelek.sav.sk, and through JSTOR Global Plants and the Biological Collection Access Service. Most localities were georeferenced and the web portal provides a mapping facility. Annotation of specimens is available via the AnnoSys facility. For each specimen a CETAF stable identifier is provided enabling the correct reference to the image and metadata.

  11. František Nábělek’s Iter Turcico-Persicum 1909–1910 – database and digitized herbarium collection

    Science.gov (United States)

    Kempa, Matúš; Edmondson, John; Lack, Hans Walter; Smatanová, Janka; Marhold, Karol

    2016-01-01

    Abstract The Czech botanist František Nábělek (1884−1965) explored the Middle East in 1909-1910, visiting what are now Israel, Palestine, Jordan, Syria, Lebanon, Iraq, Bahrain, Iran and Turkey. He described four new genera, 78 species, 69 varieties and 38 forms of vascular plants, most of these in his work Iter Turcico-Persicum (1923−1929). The main herbarium collection of Iter Turcico-Persicum comprises 4163 collection numbers (some with duplicates), altogether 6465 specimens. It is currently deposited in the herbarium SAV. In addition, some fragments and duplicates are found in B, E, W and WU. The whole collection at SAV was recently digitized and both images and metadata are available via web portal www.nabelek.sav.sk, and through JSTOR Global Plants and the Biological Collection Access Service. Most localities were georeferenced and the web portal provides a mapping facility. Annotation of specimens is available via the AnnoSys facility. For each specimen a CETAF stable identifier is provided enabling the correct reference to the image and metadata. PMID:28127245

  12. Database Replication

    CERN Document Server

    Kemme, Bettina

    2010-01-01

    Database replication is widely used for fault-tolerance, scalability and performance. The failure of one database replica does not stop the system from working as available replicas can take over the tasks of the failed replica. Scalability can be achieved by distributing the load across all replicas, and adding new replicas should the load increase. Finally, database replication can provide fast local access, even if clients are geographically distributed clients, if data copies are located close to clients. Despite its advantages, replication is not a straightforward technique to apply, and

  13. Probabilistic Databases

    CERN Document Server

    Suciu, Dan; Koch, Christop

    2011-01-01

    Probabilistic databases are databases where the value of some attributes or the presence of some records are uncertain and known only with some probability. Applications in many areas such as information extraction, RFID and scientific data management, data cleaning, data integration, and financial risk assessment produce large volumes of uncertain data, which are best modeled and processed by a probabilistic database. This book presents the state of the art in representation formalisms and query processing techniques for probabilistic data. It starts by discussing the basic principles for rep

  14. Dealer Database

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The dealer reporting databases contain the primary data reported by federally permitted seafood dealers in the northeast. Electronic reporting was implemented May 1,...

  15. RDD Databases

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This database was established to oversee documents issued in support of fishery research activities including experimental fishing permits (EFP), letters of...

  16. DrugCentral: online drug compendium.

    Science.gov (United States)

    Ursu, Oleg; Holmes, Jayme; Knockel, Jeffrey; Bologa, Cristian G; Yang, Jeremy J; Mathias, Stephen L; Nelson, Stuart J; Oprea, Tudor I

    2017-01-04

    DrugCentral (http://drugcentral.org) is an open-access online drug compendium. DrugCentral integrates structure, bioactivity, regulatory, pharmacologic actions and indications for active pharmaceutical ingredients approved by FDA and other regulatory agencies. Monitoring of regulatory agencies for new drugs approvals ensures the resource is up-to-date. DrugCentral integrates content for active ingredients with pharmaceutical formulations, indexing drugs and drug label annotations, complementing similar resources available online. Its complementarity with other online resources is facilitated by cross referencing to external resources. At the molecular level, DrugCentral bridges drug-target interactions with pharmacological action and indications. The integration with FDA drug labels enables text mining applications for drug adverse events and clinical trial information. Chemical structure overlap between DrugCentral and five online drug resources, and the overlap between DrugCentral FDA-approved drugs and their presence in four different chemical collections, are discussed. DrugCentral can be accessed via the web application or downloaded in relational database format. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

  17. Danish Urogynaecological Database

    DEFF Research Database (Denmark)

    Hansen, Ulla Darling; Gradel, Kim Oren; Larsen, Michael Due

    2016-01-01

    The Danish Urogynaecological Database is established in order to ensure high quality of treatment for patients undergoing urogynecological surgery. The database contains details of all women in Denmark undergoing incontinence surgery or pelvic organ prolapse surgery amounting to ~5,200 procedures...... per year. The variables are collected along the course of treatment of the patient from the referral to a postoperative control. Main variables are prior obstetrical and gynecological history, symptoms, symptom-related quality of life, objective urogynecological findings, type of operation......, complications if relevant, implants used if relevant, 3-6-month postoperative recording of symptoms, if any. A set of clinical quality indicators is being maintained by the steering committee for the database and is published in an annual report which also contains extensive descriptive statistics. The database...

  18. National database

    DEFF Research Database (Denmark)

    Kristensen, Helen Grundtvig; Stjernø, Henrik

    1995-01-01

    Artikel om national database for sygeplejeforskning oprettet på Dansk Institut for Sundheds- og Sygeplejeforskning. Det er målet med databasen at samle viden om forsknings- og udviklingsaktiviteter inden for sygeplejen.......Artikel om national database for sygeplejeforskning oprettet på Dansk Institut for Sundheds- og Sygeplejeforskning. Det er målet med databasen at samle viden om forsknings- og udviklingsaktiviteter inden for sygeplejen....

  19. Data collection and assessment of commonly consumed foods and recipes in six geo-political zones in Nigeria: important for the development of a National Food Composition Database and Dietary Assessment.

    Science.gov (United States)

    Ene-Obong, Henrietta N; Sanusi, Rasaki A; Udenta, Elizabeth A; Williams, Ima O; Anigo, Kola M; Chibuzo, Elizabeth C; Aliyu, Hassan M; Ekpe, Onot O; Davidson, Gloria I

    2013-10-01

    A cross-sectional study was undertaken to collect and assess commonly consumed foods/recipes from the six geopolitical zones in Nigeria for the production of food composition database (FCDB) for dietary assessment. Communities used were selected using a multi-stage sampling plan. Focus group discussions, interviews, recipe documentation, food preparations and literature reviews were employed. Qualitative methods were used to analyse and present data. SWOT (strengths, weaknesses, opportunities, and threats) analysis was used to evaluate the project. A total of 322 recipes were collected out of which 110 were soups. Food consumption patterns across the geographical zones were found to be changing. Variations in recipes and methods of preparation of similar foods were observed. Factors to be considered in the development of a country-specific FCDB were identified. There were challenges with the use of values reported in literature for Nigerian foods. The study justifies the need for a country-specific FCDB that will include traditional recipes.

  20. New tools and improvements in the Exoplanet Transit Database

    Directory of Open Access Journals (Sweden)

    Pejcha O.

    2011-02-01

    Full Text Available Comprehensive collection of the available light curves, prediction possibilities and the online model fitting procedure, that are available via Exoplanet Transit Database became very popular in the community. In this paper we summarized the changes, that we made in the ETD during last year (including the Kepler candidates into the prediction section, modeling of an unknown planet in the model-fit section and some other small improvements. All this new tools cannot be found in the main ETD paper.

  1. Desinging and Implementing an Online Bookstore Website

    OpenAIRE

    Li, Cha

    2011-01-01

    The aim of this thesis is to design and implement a web application as an online bookstore system, which consists of website interface and database. The system includes two website applications: customer application and administrator application. The stock manager is one type of administrator. The online bookstore system provides the online administrative processes, as well as the completed customer online shopping used shopping cart. It should include several basic functions, such as regi...

  2. Harmonization of Databases

    DEFF Research Database (Denmark)

    Charlifue, Susan; Tate, Denise; Biering-Sorensen, Fin

    2016-01-01

    The objectives of this article are to (1) provide an overview of existing spinal cord injury (SCI) clinical research databases-their purposes, characteristics, and accessibility to users; and (2) present a vision for future collaborations required for cross-cutting research in SCI. This vision...... strengths and weaknesses. Efforts to provide a uniform approach to data collection are also reviewed. The databases reviewed offer different approaches to capture important clinical information on SCI. They vary on size, purpose, data points, inclusion of standard outcomes, and technical requirements. Each...... highlights the need for validated and relevant data for longitudinal clinical trials and observational and epidemiologic SCI-related studies. Three existing SCI clinical research databases/registries are reviewed and summarized with regard to current formats, collection methods, and uses, including major...

  3. Online Gaming

    Directory of Open Access Journals (Sweden)

    Kevin Curran

    2005-01-01

    Full Text Available Computer gaming is a medium by which we can entertain ourselves, a medium that has expanded to the online worldwide market as part as globalization. The growth of online gaming has close ties with the use of broadband, as a good online gaming experience requires a broadband connection. Through online gaming, people can play and communicate with each other freely in almost any country, at any given time. This paper examines the phenomenon of online gaming.

  4. WMC Database Evaluation. Case Study Report

    Energy Technology Data Exchange (ETDEWEB)

    Palounek, Andrea P. T [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2015-10-29

    The WMC Database is ultimately envisioned to hold a collection of experimental data, design information, and information from computational models. This project was a first attempt at using the Database to access experimental data and extract information from it. This evaluation shows that the Database concept is sound and robust, and that the Database, once fully populated, should remain eminently usable for future researchers.

  5. First Look: VU/TEXT Databases.

    Science.gov (United States)

    Willmann, Donna

    1985-01-01

    Profiles of online services provided by VU/TEXT, which maintains market access to electronic newspaper databases, highlights scope (newspapers, business information, wire services and nonnewspaper regional information, encyclopedia); search techniques; strengths; and upcoming enhancements. Descriptions of 17 databases and sample searches are…

  6. Database on wind characteristics

    Energy Technology Data Exchange (ETDEWEB)

    Hansen, K.S. [The Technical Univ. of Denmark (Denmark); Courtney, M.S. [Risoe National Lab., (Denmark)

    1999-08-01

    The organisations that participated in the project consists of five research organisations: MIUU (Sweden), ECN (The Netherlands), CRES (Greece), DTU (Denmark), Risoe (Denmark) and one wind turbine manufacturer: Vestas Wind System A/S (Denmark). The overall goal was to build a database consisting of a large number of wind speed time series and create tools for efficiently searching through the data to select interesting data. The project resulted in a database located at DTU, Denmark with online access through the Internet. The database contains more than 50.000 hours of measured wind speed measurements. A wide range of wind climates and terrain types are represented with significant amounts of time series. Data have been chosen selectively with a deliberate over-representation of high wind and complex terrain cases. This makes the database ideal for wind turbine design needs but completely unsuitable for resource studies. Diversity has also been an important aim and this is realised with data from a large range of terrain types; everything from offshore to mountain, from Norway to Greece. (EHS)

  7. The Danish Sarcoma Database

    Directory of Open Access Journals (Sweden)

    Jorgensen PH

    2016-10-01

    complications, and recurrence within 5 years follow-up. The database is also a valuable research tool to study the impact of technical and medical interventions on prognosis of sarcoma patients. Keywords: sarcoma, skeletal and ekstraskeletal, population-based database, online database, quality indicators

  8. Comparison of Various Databases for Estimation of Dietary Polyphenol Intake in the Population of Polish Adults.

    Science.gov (United States)

    Witkowska, Anna M; Zujko, Małgorzata E; Waśkiewicz, Anna; Terlikowska, Katarzyna M; Piotrowski, Walerian

    2015-11-11

    The primary aim of the study was to estimate the consumption of polyphenols in a population of 6661 subjects aged between 20 and 74 years representing a cross-section of the Polish society, and the second objective was to compare the intakes of flavonoids calculated on the basis of the two commonly used databases. Daily food consumption data were collected in 2003-2005 using a single 24-hour dietary recall. Intake of total polyphenols was estimated using an online Phenol-Explorer database, and flavonoid intake was determined using following data sources: the United States Department of Agriculture (USDA) database combined of flavonoid and isoflavone databases, and the Phenol-Explorer database. Total polyphenol intake, which was calculated with the Phenol-Explorer database, was 989 mg/day with the major contributions of phenolic acids 556 mg/day and flavonoids 403.5 mg/day. The flavonoid intake calculated on the basis of the USDA databases was 525 mg/day. This study found that tea is the primary source of polyphenols and flavonoids for the studied population, including mainly flavanols, while coffee is the most important contributor of phenolic acids, mostly hydroxycinnamic acids. Our study also demonstrated that flavonoid intakes estimated according to various databases may substantially differ. Further work should be undertaken to expand polyphenol databases to better reflect their food contents.

  9. Comparison of Various Databases for Estimation of Dietary Polyphenol Intake in the Population of Polish Adults

    Directory of Open Access Journals (Sweden)

    Anna M. Witkowska

    2015-11-01

    Full Text Available The primary aim of the study was to estimate the consumption of polyphenols in a population of 6661 subjects aged between 20 and 74 years representing a cross-section of the Polish society, and the second objective was to compare the intakes of flavonoids calculated on the basis of the two commonly used databases. Daily food consumption data were collected in 2003–2005 using a single 24-hour dietary recall. Intake of total polyphenols was estimated using an online Phenol-Explorer database, and flavonoid intake was determined using following data sources: the United States Department of Agriculture (USDA database combined of flavonoid and isoflavone databases, and the Phenol-Explorer database. Total polyphenol intake, which was calculated with the Phenol-Explorer database, was 989 mg/day with the major contributions of phenolic acids 556 mg/day and flavonoids 403.5 mg/day. The flavonoid intake calculated on the basis of the USDA databases was 525 mg/day. This study found that tea is the primary source of polyphenols and flavonoids for the studied population, including mainly flavanols, while coffee is the most important contributor of phenolic acids, mostly hydroxycinnamic acids. Our study also demonstrated that flavonoid intakes estimated according to various databases may substantially differ. Further work should be undertaken to expand polyphenol databases to better reflect their food contents.

  10. Navigating through the Jungle of Allergens: Features and Applications of Allergen Databases.

    Science.gov (United States)

    Radauer, Christian

    2017-01-01

    The increasing number of available data on allergenic proteins demanded the establishment of structured, freely accessible allergen databases. In this review article, features and applications of 6 of the most widely used allergen databases are discussed. The WHO/IUIS Allergen Nomenclature Database is the official resource of allergen designations. Allergome is the most comprehensive collection of data on allergens and allergen sources. AllergenOnline is aimed at providing a peer-reviewed database of allergen sequences for prediction of allergenicity of proteins, such as those planned to be inserted into genetically modified crops. The Structural Database of Allergenic Proteins (SDAP) provides a database of allergen sequences, structures, and epitopes linked to bioinformatics tools for sequence analysis and comparison. The Immune Epitope Database (IEDB) is the largest repository of T-cell, B-cell, and major histocompatibility complex protein epitopes including epitopes of allergens. AllFam classifies allergens into families of evolutionarily related proteins using definitions from the Pfam protein family database. These databases contain mostly overlapping data, but also show differences in terms of their targeted users, the criteria for including allergens, data shown for each allergen, and the availability of bioinformatics tools. © 2017 S. Karger AG, Basel.

  11. Characteristics of Resources Represented in the OCLC CORC Database.

    Science.gov (United States)

    Connell, Tschera Harkness; Prabha, Chandra

    2002-01-01

    Examines the characteristics of Web resources in Online Computer Library Center's (OCLC) Cooperative Online Resource Catalog (CORC) in terms of subject matter, source of content, publication patterns, and units of information chosen for representation in the database. Suggests that the ability to successfully use a database depends on…

  12. The Danish (Q)SAR Database Update Project

    DEFF Research Database (Denmark)

    Nikolov, Nikolai Georgiev; Dybdahl, Marianne; Abildgaard Rosenberg, Sine

    2013-01-01

    , carcinogenicity and others), each of them available for 185,000 organic substances. The database has been available online since 2005 (http://qsar.food.dtu.dk). A major update project for the Danish (Q)SAR database is under way, with a new online release planned in the beginning of 2015. The updated version...

  13. Hatch: Moving towards seamless database protocols for ecological data

    Science.gov (United States)

    Fremier, A. K.; Blair, C.; Smith, S.; Weigel, D.; Newsom, M. A.

    2013-12-01

    Data collection and ecological processes do not occur at similar scales. Monitoring our environment, therefore, requires research approaches that integrate data across spatial and temporal scales. Despite the enormous amount of data being collected annually, many government agencies are only now beginning to build coordinated data management systems. With efficient data flows and coded analysis tools, researchers will be better prepared to quickly answer key ecological questions across datasets. In this project, we designed an online platform for seamless data management, called Hatch. Our aim is to improve database protocols and data access to allow timely analysis of existing data, across time and space. Hatch is being developed for ecological monitoring of stream ecosystems in the Methow River basin in Washington State; however, the platform is general enough for managing multiple forms of database types. Hatch currently applies both a schema and schema-less database structure to link data collection events. It applies data standards developed and accepted across the Columbia River Basin. Initial data capture is driven by data needs for a mechanism-based model of ecosystem processes (namely periphyton production). Input data files, both past and current flows, are validated and stored along with metadata. Data search tools are being designed in accordance with data sharing agreements with appropriate security. The goal of Hatch is to defragment the analysis workspace by integrating data capture, search and analysis. Hatch helps researchers capture, search and analyze data in an online, flexible platform while conforming to project a specific schema. With less fragmented database protocols, scientists will be better prepared to efficiently answer scientific questions at relevant ecological scales.

  14. Inorganic Crystal Structure Database (ICSD)

    Science.gov (United States)

    SRD 84 FIZ/NIST Inorganic Crystal Structure Database (ICSD) (PC database for purchase)   The Inorganic Crystal Structure Database (ICSD) is produced cooperatively by the Fachinformationszentrum Karlsruhe(FIZ) and the National Institute of Standards and Technology (NIST). The ICSD is a comprehensive collection of crystal structure data of inorganic compounds containing more than 140,000 entries and covering the literature from 1915 to the present.

  15. Plant and animal communities along the Swedish Baltic Sea coast - the building of a database of quantitative data collected by SCUBA divers, its use and some GIS applications in the Graesoe area

    Energy Technology Data Exchange (ETDEWEB)

    Sandman, Antonia; Kautsky, Hans [Stockholm Univ. (Sweden). Dept. of Systems Ecology

    2004-06-01

    The aim of the project was to compile a single database with quantitative data collected by SCUBA divers from the whole Swedish Baltic Sea coast. Data of plant and animal biomass, together with position, depth and type of substrate from 19 areas along the Swedish coast from the county of Blekinge to Kalix in the Bothnian Bay were compiled in a single database. In all, the database contains 2,170 records (samples) from 179 different stations where in total 161 plant and 145 animal species have been found. The data were then illustrated by the geographical distribution of plant and animal biomass and by constructing a model to estimate future changes of the plant and animal communities in the Graesoe area in the Aaland Sea applying GIS-techniques. To illustrate the opportunities of the database the change of the composition of benthic plant and animal biomass with salinity was calculated. The proportion of marine species increased with increasing salinity and the benthic biomass was at its highest in the southern Baltic proper. Quantitative data from Grepen and the Graesoe-Singoe area were used to calculate present biomass in the Graesoe area. A scenario of the change in biomass distribution and total biomass caused by shore displacement was created using data from Raaneaa and Kalix in the Bothnian Bay. To map the biomass distribution the material was divided into different depth intervals. The change of biomass with time was calculated as a function of salinity change and reduction of the available area, caused by shore displacement. The total biomass for all plants and animals in the investigated area was 50,500 tonnes at present. In 2,000 years the total biomass will be 25,000 tonnes and in 4,000 years 3,600 tonnes due to shore displacement causing a decrease in both salinity and available substrate.To make an estimate of the species distribution and a rough estimate of their biomass in an unknown geographic area, the type of substrate, the depth and the wave

  16. Plant and animal communities along the Swedish Baltic Sea coast - the building of a database of quantitative data collected by SCUBA divers, its use and some GIS applications in the Graesoe area

    Energy Technology Data Exchange (ETDEWEB)

    Sandman, Antonia; Kautsky, Hans [Stockholm Univ. (Sweden). Dept. of Systems Ecology

    2005-03-01

    The aim of the project was to compile a single database with quantitative data collected by SCUBA divers from the whole Swedish Baltic Sea coast. Data of plant and animal biomass, together with position, depth and type of substrate from 19 areas along the Swedish coast from the county of Blekinge to Kalix in the Bothnian Bay were compiled in a single database. In all, the database contains 2,170 records (samples) from 179 different stations where in total 161 plant and 145 animal species have been found. The data were then illustrated by the geographical distribution of plant and animal biomass and by constructing a model to estimate future changes of the plant and animal communities in the Graesoe area in the Aaland Sea applying GIS-techniques. To illustrate the opportunities of the database the change of the composition of benthic plant and animal biomass with salinity was calculated. The proportion of marine species increased with increasing salinity and the benthic biomass was at its highest in the southern Baltic proper. Quantitative data from Grepen and the Graesoe-Singoe area were used to calculate present biomass in the Graesoe area. A scenario of the change in biomass distribution and total biomass caused by shore displacement was created using data from Raaneaa and Kalix in the Bothnian Bay. To map the biomass distribution the material was divided into different depth intervals. The change of biomass with time was calculated as a function of salinity change and reduction of the available area, caused by shore displacement. The total biomass for all plants and animals in the investigated area was 50,500 tonnes at present. In 2,000 years the total biomass will be 25,000 tonnes and in 4,000 years 3,600 tonnes due to shore displacement causing a decrease in both salinity and available substrate.To make an estimate of the species distribution and a rough estimate of their biomass in an unknown geographic area, the type of substrate, the depth and the wave

  17. The Danish Testicular Cancer database

    DEFF Research Database (Denmark)

    Daugaard, Gedske; Kier, Maria Gry Gundgaard; Bandak, Mikkel

    2016-01-01

    AIM: The nationwide Danish Testicular Cancer database consists of a retrospective research database (DaTeCa database) and a prospective clinical database (Danish Multidisciplinary Cancer Group [DMCG] DaTeCa database). The aim is to improve the quality of care for patients with testicular cancer (TC......) in Denmark, that is, by identifying risk factors for relapse, toxicity related to treatment, and focusing on late effects. STUDY POPULATION: All Danish male patients with a histologically verified germ cell cancer diagnosis in the Danish Pathology Registry are included in the DaTeCa databases. Data...... survivors alive on October 2014 were invited to fill in this questionnaire including 160 validated questions. Collection of questionnaires is still ongoing. A biobank including blood/sputum samples for future genetic analyses has been established. Both samples related to DaTeCa and DMCG DaTeCa database...

  18. RICD: A rice indica cDNA database resource for rice functional genomics

    Directory of Open Access Journals (Sweden)

    Zhang Qifa

    2008-11-01

    Full Text Available Abstract Background The Oryza sativa L. indica subspecies is the most widely cultivated rice. During the last few years, we have collected over 20,000 putative full-length cDNAs and over 40,000 ESTs isolated from various cDNA libraries of two indica varieties Guangluai 4 and Minghui 63. A database of the rice indica cDNAs was therefore built to provide a comprehensive web data source for searching and retrieving the indica cDNA clones. Results Rice Indica cDNA Database (RICD is an online MySQL-PHP driven database with a user-friendly web interface. It allows investigators to query the cDNA clones by keyword, genome position, nucleotide or protein sequence, and putative function. It also provides a series of information, including sequences, protein domain annotations, similarity search results, SNPs and InDels information, and hyperlinks to gene annotation in both The Rice Annotation Project Database (RAP-DB and The TIGR Rice Genome Annotation Resource, expression atlas in RiceGE and variation report in Gramene of each cDNA. Conclusion The online rice indica cDNA database provides cDNA resource with comprehensive information to researchers for functional analysis of indica subspecies and for comparative genomics. The RICD database is available through our website http://www.ncgr.ac.cn/ricd.

  19. RNA STRAND: The RNA Secondary Structure and Statistical Analysis Database

    Directory of Open Access Journals (Sweden)

    Andronescu Mirela

    2008-08-01

    Full Text Available Abstract Background The ability to access, search and analyse secondary structures of a large set of known RNA molecules is very important for deriving improved RNA energy models, for evaluating computational predictions of RNA secondary structures and for a better understanding of RNA folding. Currently there is no database that can easily provide these capabilities for almost all RNA molecules with known secondary structures. Results In this paper we describe RNA STRAND – the RNA secondary STRucture and statistical ANalysis Database, a curated database containing known secondary structures of any type and organism. Our new database provides a wide collection of known RNA secondary structures drawn from public databases, searchable and downloadable in a common format. Comprehensive statistical information on the secondary structures in our database is provided using the RNA Secondary Structure Analyser, a new tool we have developed to analyse RNA secondary structures. The information thus obtained is valuable for understanding to which extent and with which probability certain structural motifs can appear. We outline several ways in which the data provided in RNA STRAND can facilitate research on RNA structure, including the improvement of RNA energy models and evaluation of secondary structure prediction programs. In order to keep up-to-date with new RNA secondary structure experiments, we offer the necessary tools to add solved RNA secondary structures to our database and invite researchers to contribute to RNA STRAND. Conclusion RNA STRAND is a carefully assembled database of trusted RNA secondary structures, with easy on-line tools for searching, analyzing and downloading user selected entries, and is publicly available at http://www.rnasoft.ca/strand.

  20. Public chemical compound databases.

    Science.gov (United States)

    Williams, Anthony J

    2008-05-01

    The internet has rapidly become the first port of call for all information searches. The increasing array of chemistry-related resources that are now available provides chemists with a direct path to the information that was previously accessed via library services and was limited by commercial and costly resources. The diversity of the information that can be accessed online is expanding at a dramatic rate, and the support for publicly available resources offers significant opportunities in terms of the benefits to science and society. While the data online do not generally meet the quality standards of manually curated sources, there are efforts underway to gather scientists together and 'crowdsource' an improvement in the quality of the available data. This review discusses the types of public compound databases that are available online and provides a series of examples. Focus is also given to the benefits and disruptions associated with the increased availability of such data and the integration of technologies to data mine this information.

  1. The UCSC Genome Browser Database

    DEFF Research Database (Denmark)

    Karolchik, D; Kuhn, R M; Baertsch, R

    2008-01-01

    The University of California, Santa Cruz, Genome Browser Database (GBD) provides integrated sequence and annotation data for a large collection of vertebrate and model organism genomes. Seventeen new assemblies have been added to the database in the past year, for a total coverage of 19 vertebrat...

  2. 100 Years of Glacier Photographs: Available Online at the National Snow and Ice Data Center

    Science.gov (United States)

    Ballagh, L. M.; Wolfe, J.; Wang, I.; Casey, A.; Fetterer, F.

    2004-12-01

    Historic glacier photographs can be used to study fluctuations in glacier extent over time in response to climate change. Researchers can also use the photographs to approximate changes in glacier terminus location and mass balance. The "Glacier Photograph Collection" at the National Snow and Ice Data Center (NSIDC) contains approximately 5,000 photographs, including both aerial and terrestrial images. NSIDC received funding from the NOAA Climate Database Modernization Program (CDMP) to digitize a portion of the photographs and make an Online Glacier Photograph Database available. The CDMP's primary objective is to preserve climate data and facilitate access to the data. Although digitizing images is expensive, long-term data preservation is a major benefit. When historic photographs are stored on film, images can easily be scratched or damaged. Scanning the images and having them online makes browsing images easier for users. At present, there are 1,313 glacier photographs available online. Additional photos and metadata are being added. The Online Glacier Photograph Database will date from 1883 to 1995, totaling nearly 3,000 photographs available as high resolution TIFF images and lower resolution reference images and thumbnails by the end of 2004. Maintaining accurate metadata records for each photograph is very important. The database is searchable by various fields, including photographer name, photograph date, glacier name, glacier coordinates, state/province, and keyword.

  3. E3 Portfolio Review Database

    Data.gov (United States)

    US Agency for International Development — The E3 Portfolio Review Database houses operational and performance data for all activities that the Bureau funds and/or manages. Activity-level data is collected by...

  4. Consolidated Human Activities Database (CHAD)

    Data.gov (United States)

    U.S. Environmental Protection Agency — The Consolidated Human Activity Database (CHAD) contains data obtained from human activity studies that were collected at city, state, and national levels. CHAD is...

  5. InterAction Database (IADB)

    Science.gov (United States)

    The InterAction Database includes demographic and prescription information for more than 500,000 patients in the northern and middle Netherlands and has been integrated with other systems to enhance data collection and analysis.

  6. Online reklama

    OpenAIRE

    Švarc, Ondřej

    2016-01-01

    This thesis is thematically focused on online advertising. The paper describes the history of online advertising and its advantages and disadvantages compared to other media types. There are mentioned standards of online advertising on the Czech Internet and ways to optimize the different types for better performance. Next we go over the characteristics of selected tools for assessing the success and management of online campaigns. We also compare the advertising possibilities ...

  7. MetaBase—the wiki-database of biological databases

    Science.gov (United States)

    Bolser, Dan M.; Chibon, Pierre-Yves; Palopoli, Nicolas; Gong, Sungsam; Jacob, Daniel; Angel, Victoria Dominguez Del; Swan, Dan; Bassi, Sebastian; González, Virginia; Suravajhala, Prashanth; Hwang, Seungwoo; Romano, Paolo; Edwards, Rob; Bishop, Bryan; Eargle, John; Shtatland, Timur; Provart, Nicholas J.; Clements, Dave; Renfro, Daniel P.; Bhak, Daeui; Bhak, Jong

    2012-01-01

    Biology is generating more data than ever. As a result, there is an ever increasing number of publicly available databases that analyse, integrate and summarize the available data, providing an invaluable resource for the biological community. As this trend continues, there is a pressing need to organize, catalogue and rate these resources, so that the information they contain can be most effectively exploited. MetaBase (MB) (http://MetaDatabase.Org) is a community-curated database containing more than 2000 commonly used biological databases. Each entry is structured using templates and can carry various user comments and annotations. Entries can be searched, listed, browsed or queried. The database was created using the same MediaWiki technology that powers Wikipedia, allowing users to contribute on many different levels. The initial release of MB was derived from the content of the 2007 Nucleic Acids Research (NAR) Database Issue. Since then, approximately 100 databases have been manually collected from the literature, and users have added information for over 240 databases. MB is synchronized annually with the static Molecular Biology Database Collection provided by NAR. To date, there have been 19 significant contributors to the project; each one is listed as an author here to highlight the community aspect of the project. PMID:22139927

  8. A Comparison of Online Search Skills among Public Medical Science Students of Bandar Abbas and Rafsanjan Universities in 2008- 2009

    Directory of Open Access Journals (Sweden)

    Mahboobeh Mahmoodi maybonde

    2012-03-01

    Full Text Available This study aimed to review and compare online search skills and determine the factors affecting familiarity with these skills among the medical students studying at two State Universities (Bandar Abbas and Rafsanjan.The sample consisted of 545 students and data was collected by using questionnaires. The gathered data was analyzed using descriptive statistics and SPSS software. Using 7 online search skills and factors affecting familiarity with these skills, attempt was made to identify the most influential factors and also assess the students' familiarity with these skills utilizing specialized questions. Moreover, the findings of the research indicated that the overall assessment of students at Bandar Abbas was higher than that of Rafsanjan. However, there was no statistically significant difference between the two groups regarding specialized questions about online search skills. Factors such as English proficiency, the students' ideas about their ability in information retrieval, interest in medical digital library and obtaining new information using databases, their previous experience, whether the students agree with offering a course in online search skills, seeking others help familiarity with databases and interest in presenting articles in congresses. All had a significant effect on familiarity and identification of online search skills. Furthermore, gender, stage of study (basic sciences, pathophysiology or clinical, English proficiency, previous experience, and familiarity with databases had a significant effect on the effectiveness of online search skills.

  9. Database Vs Data Warehouse

    Directory of Open Access Journals (Sweden)

    2007-01-01

    Full Text Available Data warehouse technology includes a set of concepts and methods that offer the users useful information for decision making. The necessity to build a data warehouse arises from the necessity to improve the quality of information in the organization. The date proceeding from different sources, having a variety of forms - both structured and unstructured, are filtered according to business rules and are integrated in a single large data collection. Using informatics solutions, managers have understood that data stored in operational systems - including databases, are an informational gold mine that must be exploited. Data warehouses have been developed to answer the increasing demands for complex analysis, which could not be properly achieved with operational databases. The present paper emphasizes some of the criteria that information application developers can use in order to choose between a database solution or a data warehouse one.

  10. Towards Sensor Database Systems

    DEFF Research Database (Denmark)

    Bonnet, Philippe; Gehrke, Johannes; Seshadri, Praveen

    2001-01-01

    Sensor networks are being widely deployed for measurement, detection and surveillance applications. In these new applications, users issue long-running queries over a combination of stored data and sensor data. Most existing applications rely on a centralized system for collecting sensor data....... These systems lack flexibility because data is extracted in a predefined way; also, they do not scale to a large number of devices because large volumes of raw data are transferred regardless of the queries that are submitted. In our new concept of sensor database system, queries dictate which data is extracted...... from the sensors. In this paper, we define the concept of sensor databases mixing stored data represented as relations and sensor data represented as time series. Each long-running query formulated over a sensor database defines a persistent view, which is maintained during a given time interval. We...

  11. Creation, Visualization and 3D Printing of Online Collections of Three Timensional Educative Models with Low-Cost Technologies. Practical Case of Canarian Marine Fossil Heritage

    Directory of Open Access Journals (Sweden)

    Jose Luis SAORIN PÉREZ

    2016-12-01

    Full Text Available In many educational settings, the use of tangible objects is used to enhance learning (models, replicas of art works, fossils.... When knowledge is disseminated through virtual environments, sometimes, the value of these tangible objects is lost. The new low-cost technologies allow solving this problem, enabling teachers to include in their virtual classroom the access and manipulation of threedimensional objects. This article describes the process of creation and dissemination of a three-dimensional, interactive educational content for learning in a virtual environment. As a practical study, we have worked on the Canary marine fossil heritage. The fossils are used as tangible material in paleontology teaching, however they are not available for work outside the classroom. For this work, it has been digitized in 3D a selection of 18 fossils. 3D files obtained are available to students in an online environment, allowing download, multi-touch display and interaction on mobile devices. In addition, if the student prefers, they can print them using a 3D printer. Finally, there has been an experience with 70 university students who, after accessing to the online files, responded to a questionnaire to assess the made materials.

  12. Legume and Lotus japonicus Databases

    DEFF Research Database (Denmark)

    Hirakawa, Hideki; Mun, Terry; Sato, Shusei

    2014-01-01

    Since the genome sequence of Lotus japonicus, a model plant of family Fabaceae, was determined in 2008 (Sato et al. 2008), the genomes of other members of the Fabaceae family, soybean (Glycine max) (Schmutz et al. 2010) and Medicago truncatula (Young et al. 2011), have been sequenced. In this sec....... In this section, we introduce representative, publicly accessible online resources related to plant materials, integrated databases containing legume genome information, and databases for genome sequence and derived marker information of legume species including L. japonicus...

  13. Mapping randomized controlled trials of treatments for eczema - The GREAT database (The Global Resource of Eczema Trials: a collection of key data on randomized controlled trials of treatments for eczema from 2000 to 2010

    Directory of Open Access Journals (Sweden)

    Williams Hywel C

    2011-05-01

    trial, the database gives the citation for the published report and also provides enough information to enable a user to decide whether the trial is worth further scrutiny. Conclusions The Global Resource of Eczema Trials has been created to facilitate knowledge mobilization into healthcare and to reduce wastage of research time through unnecessary duplication. The collective time saved by research groups around the world can now be used to make strides in optimising the treatment of eczema, in order to further benefit people with eczema. The database can be accessed free of charge at http://www.greatdatabase.org.uk

  14. The AMMA database

    Science.gov (United States)

    Boichard, Jean-Luc; Brissebrat, Guillaume; Cloche, Sophie; Eymard, Laurence; Fleury, Laurence; Mastrorillo, Laurence; Moulaye, Oumarou; Ramage, Karim

    2010-05-01

    The AMMA project includes aircraft, ground-based and ocean measurements, an intensive use of satellite data and diverse modelling studies. Therefore, the AMMA database aims at storing a great amount and a large variety of data, and at providing the data as rapidly and safely as possible to the AMMA research community. In order to stimulate the exchange of information and collaboration between researchers from different disciplines or using different tools, the database provides a detailed description of the products and uses standardized formats. The AMMA database contains: - AMMA field campaigns datasets; - historical data in West Africa from 1850 (operational networks and previous scientific programs); - satellite products from past and future satellites, (re-)mapped on a regular latitude/longitude grid and stored in NetCDF format (CF Convention); - model outputs from atmosphere or ocean operational (re-)analysis and forecasts, and from research simulations. The outputs are processed as the satellite products are. Before accessing the data, any user has to sign the AMMA data and publication policy. This chart only covers the use of data in the framework of scientific objectives and categorically excludes the redistribution of data to third parties and the usage for commercial applications. Some collaboration between data producers and users, and the mention of the AMMA project in any publication is also required. The AMMA database and the associated on-line tools have been fully developed and are managed by two teams in France (IPSL Database Centre, Paris and OMP, Toulouse). Users can access data of both data centres using an unique web portal. This website is composed of different modules : - Registration: forms to register, read and sign the data use chart when an user visits for the first time - Data access interface: friendly tool allowing to build a data extraction request by selecting various criteria like location, time, parameters... The request can

  15. Difference to Inference: teaching logical and statistical reasoning through on-line interactivity.

    Science.gov (United States)

    Malloy, T E

    2001-05-01

    Difference to Inference is an on-line JAVA program that simulates theory testing and falsification through research design and data collection in a game format. The program, based on cognitive and epistemological principles, is designed to support learning of the thinking skills underlying deductive and inductive logic and statistical reasoning. Difference to Inference has database connectivity so that game scores can be counted as part of course grades.

  16. Consumer Behaviour in Online Shopping

    OpenAIRE

    Hasslinger, Anders; Hodzic, Selma; Opazo, Claudio

    2008-01-01

    The Internet has developed into a new distribution channel and online transactions are rapidly increasing. This has created a need to understand how the consumer perceives online purchases. The purpose of this dissertation was to examine if there are any particular factors that influence the online consumer. Primary data was collected through a survey that was conducted on students at the University of Kristianstad. Price, Trust and Convenience were identified as important factors. Price was ...

  17. Providing researchers with online access to NHLBI biospecimen collections: The results of the first six years of the NHLBI BioLINCC program.

    Science.gov (United States)

    Giffen, Carol A; Wagner, Elizabeth L; Adams, John T; Hitchcock, Denise M; Welniak, Lisbeth A; Brennan, Sean P; Carroll, Leslie E

    2017-01-01

    The National Heart, Lung, and Blood Institute (NHLBI), within the United States' National Institutes of Health (NIH), established the Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) in 2008 to develop the infrastructure needed to link the contents of the NHLBI Biorepository and the NHLBI Data Repository, and to promote the utilization of these scientific resources by the broader research community. Program utilization metrics were developed to measure the impact of BioLINCC on Biorepository access by researchers, including visibility, program efficiency, user characteristics, scientific impact, and research types. Input data elements were defined and are continually populated as requests move through the process of initiation through fulfillment and publication. This paper reviews the elements of the tracking metrics which were developed for BioLINCC and reports the results for the first six on-line years of the program.

  18. HeinOnline: An Online Archive of Law Journals.

    Science.gov (United States)

    Marisa, Richard J.

    Law is grounded in the past, in the decisions and reasoning of generations of lawyers, judges, juries, and professors. Ready access to this history is vital to solid legal research, and yet, until 2000, much of it was buried in vast collections of aging paper journals. HeinOnline is a new online archive of law journals. Development of HeinOnline…

  19. The Danish Testicular Cancer database

    Directory of Open Access Journals (Sweden)

    Daugaard G

    2016-10-01

    Full Text Available Gedske Daugaard,1 Maria Gry Gundgaard Kier,1 Mikkel Bandak,1 Mette Saksø Mortensen,1 Heidi Larsson,2 Mette Søgaard,2 Birgitte Groenkaer Toft,3 Birte Engvad,4 Mads Agerbæk,5 Niels Vilstrup Holm,6 Jakob Lauritsen1 1Department of Oncology 5073, Copenhagen University Hospital, Rigshospitalet, Copenhagen, 2Department of Clinical Epidemiology, Aarhus University Hospital, Aarhus, 3Department of Pathology, Copenhagen University Hospital, Rigshospitalet, Copenhagen, 4Department of Pathology, Odense University Hospital, Odense, 5Department of Oncology, Aarhus University Hospital, Aarhus, 6Department of Oncology, Odense University Hospital, Odense, Denmark Aim: The nationwide Danish Testicular Cancer database consists of a retrospective research database (DaTeCa database and a prospective clinical database (Danish Multidisciplinary Cancer Group [DMCG] DaTeCa database. The aim is to improve the quality of care for patients with testicular cancer (TC in Denmark, that is, by identifying risk factors for relapse, toxicity related to treatment, and focusing on late effects. Study population: All Danish male patients with a histologically verified germ cell cancer diagnosis in the Danish Pathology Registry are included in the DaTeCa databases. Data collection has been performed from 1984 to 2007 and from 2013 onward, respectively. Main variables and descriptive data: The retrospective DaTeCa database contains detailed information with more than 300 variables related to histology, stage, treatment, relapses, pathology, tumor markers, kidney function, lung function, etc. A questionnaire related to late effects has been conducted, which includes questions regarding social relationships, life situation, general health status, family background, diseases, symptoms, use of medication, marital status, psychosocial issues, fertility, and sexuality. TC survivors alive on October 2014 were invited to fill in this questionnaire including 160 validated questions

  20. BriX: a database of protein building blocks for structural analysis, modeling and design.

    Science.gov (United States)

    Vanhee, Peter; Verschueren, Erik; Baeten, Lies; Stricher, Francois; Serrano, Luis; Rousseau, Frederic; Schymkowitz, Joost

    2011-01-01

    High-resolution structures of proteins remain the most valuable source for understanding their function in the cell and provide leads for drug design. Since the availability of sufficient protein structures to tackle complex problems such as modeling backbone moves or docking remains a problem, alternative approaches using small, recurrent protein fragments have been employed. Here we present two databases that provide a vast resource for implementing such fragment-based strategies. The BriX database contains fragments from over 7000 non-homologous proteins from the Astral collection, segmented in lengths from 4 to 14 residues and clustered according to structural similarity, summing up to a content of 2 million fragments per length. To overcome the lack of loops classified in BriX, we constructed the Loop BriX database of non-regular structure elements, clustered according to end-to-end distance between the regular residues flanking the loop. Both databases are available online (http://brix.crg.es) and can be accessed through a user-friendly web-interface. For high-throughput queries a web-based API is provided, as well as full database downloads. In addition, two exciting applications are provided as online services: (i) user-submitted structures can be covered on the fly with BriX classes, representing putative structural variation throughout the protein and (ii) gaps or low-confidence regions in these structures can be bridged with matching fragments.

  1. Physical and biological data collected off the Florida coast in the North Atlantic Ocean and the Gulf of Mexico as part of the Harmful Algal Bloom Historical Database from February 5, 1954 to December 30, 1998 (NODC Accession 0000585)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — In the later part of 1999, a relational Microsoft Access database was created to accommodate a wide range of data on the phytoplankton Karenia brevis. This database,...

  2. Shuttle Case Study Collection Website Development

    Science.gov (United States)

    Ransom, Khadijah S.; Johnson, Grace K.

    2012-01-01

    As a continuation from summer 2012, the Shuttle Case Study Collection has been developed using lessons learned documented by NASA engineers, analysts, and contractors. Decades of information related to processing and launching the Space Shuttle is gathered into a single database to provide educators with an alternative means to teach real-world engineering processes. The goal is to provide additional engineering materials that enhance critical thinking, decision making, and problem solving skills. During this second phase of the project, the Shuttle Case Study Collection website was developed. Extensive HTML coding to link downloadable documents, videos, and images was required, as was training to learn NASA's Content Management System (CMS) for website design. As the final stage of the collection development, the website is designed to allow for distribution of information to the public as well as for case study report submissions from other educators online.

  3. Online Advertising

    OpenAIRE

    Goldfarb, Avi; Tucker, Catherine Elizabeth

    2011-01-01

    This chapter explores what makes online advertising different from traditional advertising channels. We argue that online advertising differs from traditional advertising channels in two important ways: measurability and targetability. Measurability is higher because the digital nature of online advertising means that responses to ads can be tracked relatively easily. Targetability is higher because data can be automatically tracked at an individual level, and it is relatively easy to show di...

  4. Converting Student Support Services to Online Delivery.

    Science.gov (United States)

    Brigham, David E.

    2001-01-01

    Uses a systems framework to analyze the creation of student support services for distance education at Regents College: electronic advising, electronic peer network, online course database, online bookstore, virtual library, and alumni services website. Addresses the issues involved in converting distance education programs from print-based and…

  5. Seniors' Online Communities: A Quantitative Content Analysis

    Science.gov (United States)

    Nimrod, Galit

    2010-01-01

    Purpose: To examine the contents and characteristics of seniors' online communities and to explore their potential benefits to older adults. Design and Methods: Quantitative content analysis of a full year's data from 14 leading online communities using a novel computerized system. The overall database included 686,283 messages. Results: There was…

  6. Migration from Print to Online Use.

    Science.gov (United States)

    Trubkin, Leone

    1980-01-01

    Examines the economic effects on information-producing companies of user migration from print to online information services. Three reasons are cited for the transition to online: (1) inflation, (2) new technology, and (3) database enhancement. Cost graphs and responses to questionnaires supplement the discussion. (SW)

  7. VitisExpDB: A database resource for grape functional genomics

    Directory of Open Access Journals (Sweden)

    Walker M Andrew

    2008-02-01

    Full Text Available Abstract Background The family Vitaceae consists of many different grape species that grow in a range of climatic conditions. In the past few years, several studies have generated functional genomic information on different Vitis species and cultivars, including the European grape vine, Vitis vinifera. Our goal is to develop a comprehensive web data source for Vitaceae. Description VitisExpDB is an online MySQL-PHP driven relational database that houses annotated EST and gene expression data for V. vinifera and non-vinifera grape species and varieties. Currently, the database stores ~320,000 EST sequences derived from 8 species/hybrids, their annotation (BLAST top match details and Gene Ontology based structured vocabulary. Putative homologs for each EST in other species and varieties along with information on their percent nucleotide identities, phylogenetic relationship and common primers can be retrieved. The database also includes information on probe sequence and annotation features of the high density 60-mer gene expression chip consisting of ~20,000 non-redundant set of ESTs. Finally, the database includes 14 processed global microarray expression profile sets. Data from 12 of these expression profile sets have been mapped onto metabolic pathways. A user-friendly web interface with multiple search indices and extensively hyperlinked result features that permit efficient data retrieval has been developed. Several online bioinformatics tools that interact with the database along with other sequence analysis tools have been added. In addition, users can submit their ESTs to the database. Conclusion The developed database provides genomic resource to grape community for functional analysis of genes in the collection and for the grape genome annotation and gene function identification. The VitisExpDB database is available through our website http://cropdisease.ars.usda.gov/vitis_at/main-page.htm.

  8. The National Landslide Database and GIS for Great Britain: construction, development, data acquisition, application and communication

    Science.gov (United States)

    Pennington, Catherine; Dashwood, Claire; Freeborough, Katy

    2014-05-01

    The National Landslide Database has been developed by the British Geological Survey (BGS) and is the focus for national geohazard research for landslides in Great Britain. The history and structure of the geospatial database and associated Geographical Information System (GIS) are explained, along with the future developments of the database and its applications. The database is the most extensive source of information on landslides in Great Britain with over 16,500 records of landslide events, each documented as fully as possible. Data are gathered through a range of procedures, including: incorporation of other databases; automated trawling of current and historical scientific literature and media reports; new field- and desk-based mapping technologies with digital data capture, and crowd-sourcing information through social media and other online resources. This information is invaluable for the investigation, prevention and mitigation of areas of unstable ground in accordance with Government planning policy guidelines. The national landslide susceptibility map (GeoSure) and a national landslide domain map currently under development rely heavily on the information contained within the landslide database. Assessing susceptibility to landsliding requires knowledge of the distribution of failures and an understanding of causative factors and their spatial distribution, whilst understanding the frequency and types of landsliding present is integral to modelling how rainfall will influence the stability of a region. Communication of landslide data through the Natural Hazard Partnership (NHP) contributes to national hazard mitigation and disaster risk reduction with respect to weather and climate. Daily reports of landslide potential are published by BGS through the NHP and data collected for the National Landslide Database is used widely for the creation of these assessments. The National Landslide Database is freely available via an online GIS and is used by a

  9. SeaBuoySoft – an On-line Automated Windows based Ocean Wave height Data Acquisition and Analysis System for Coastal Field’s Data Collection

    Directory of Open Access Journals (Sweden)

    P.H.Tarudkar

    2014-12-01

    Full Text Available Measurement of various hydraulic parameters such as wave heights for the research and the practical purpose in the coastal fields is one of the critical and challenging but equally important criteria in the field of ocean engineering for the design and the development of hydraulic structures such as construction of sea walls, break waters, oil jetties, fisheries harbors, all other structures, and the ships maneuvering, embankments, berthing on jetties. This paper elucidates the development of “SeaBuoySoft online software system for coastal field‟s wave height data collection” for the coastal application work. The system could be installed along with the associated hardware such as a Digital Waverider Receiver unit and a Waverider Buoy at the shore. The ocean wave height data, transmitted by wave rider buoy installed in the shallow/offshore waters of sea is received by the digital waverider receiver unit and it is interfaced to the SeaBuoySoft software. The design and development of the software system has been worked out in-house at Central Water and Power Research Station, Pune, India. The software has been developed as a Windows based standalone version and is unique of its kind for the reception of real time ocean wave height data, it takes care of its local storage of wave height data for its further analysis work as and when required. The system acquires real time ocean wave height data round the clock requiring no operator intervention during data acquisition process on site.

  10. MOX - TDB : Nuclear Thermodynamic DataBase

    OpenAIRE

    Cheynet, Bertrand

    2006-01-01

    37 pages; A thermodynamic database collecting critical assessments made for nuclear applications has been built since 2003 for the MOX fuel. MOX-TDB is a thermodynamic database for in-vessel applications coontaining : Ba-Fe-La-O-Pu-Ru-Sr-U-Zr + Ar-H. This database covers the entire field from metal to oxide domains.

  11. NCI Visuals Online

    Science.gov (United States)

    NCI Visuals Online contains images from the collections of the National Cancer Institute's Office of Communications and Public Liaison, including general biomedical and science-related images, cancer-specific scientific and patient care-related images, and portraits of directors and staff of the National Cancer Institute.

  12. Evaluation of Online Searches.

    Science.gov (United States)

    Blood, Richard W.

    Based on an analysis of online search evaluation forms collected from all types of U.S. libraries, and a pilot test of a draft evaluation form in selected federal research libraries, this report presents the work of the American Library Association's (ALA's) Machine-Assisted Reference Section (MARS) Committee on Measurement and Evaluation. The…

  13. African Journals Online (AJOL)

    African Journals Online (AJOL)

    African Journals OnLine (AJOL) is the world's largest and pre-eminent collection of ... this, so that African-origin research output is available to Africans and to the rest of the world. ... International Journal of Biological and Chemical Sciences.

  14. Shortcuts to Finding Short Stories: Searching Fiction Online.

    Science.gov (United States)

    Pack, Thomas, Jr.

    1992-01-01

    Discusses the publication of short stories and problems of electronic access to them through online databases. Magazines that publish short stories and are indexed in databases are discussed, electronic access to university publications is described, online citations and abstracts are explained, and the future of fiction is considered. (four…

  15. CMD: a Cotton Microsatellite Database resource for Gossypium genomics

    Directory of Open Access Journals (Sweden)

    Liu Shaolin

    2006-05-01

    Full Text Available Abstract Background The Cotton Microsatellite Database (CMD http://www.cottonssr.org is a curated and integrated web-based relational database providing centralized access to publicly available cotton microsatellites, an invaluable resource for basic and applied research in cotton breeding. Description At present CMD contains publication, sequence, primer, mapping and homology data for nine major cotton microsatellite projects, collectively representing 5,484 microsatellites. In addition, CMD displays data for three of the microsatellite projects that have been screened against a panel of core germplasm. The standardized panel consists of 12 diverse genotypes including genetic standards, mapping parents, BAC donors, subgenome representatives, unique breeding lines, exotic introgression sources, and contemporary Upland cottons with significant acreage. A suite of online microsatellite data mining tools are accessible at CMD. These include an SSR server which identifies microsatellites, primers, open reading frames, and GC-content of uploaded sequences; BLAST and FASTA servers providing sequence similarity searches against the existing cotton SSR sequences and primers, a CAP3 server to assemble EST sequences into longer transcripts prior to mining for SSRs, and CMap, a viewer for comparing cotton SSR maps. Conclusion The collection of publicly available cotton SSR markers in a centralized, readily accessible and curated web-enabled database provides a more efficient utilization of microsatellite resources and will help accelerate basic and applied research in molecular breeding and genetic mapping in Gossypium spp.

  16. Development of a database to record orofacial manifestations in patients with rare diseases: a status report from the ROMSE (recording of orofacial manifestations in people with rare diseases) database.

    Science.gov (United States)

    Hanisch, M; Hanisch, L; Benz, K; Kleinheinz, J; Jackowski, J

    2017-02-23

    The aim of this working group was to establish a ROMSE (recording of orofacial manifestations in people with rare diseases) database to provide clinicians, patients, and their families with better information about these diseases. In 2011, we began to search the databases Orphanet, OMIM(®) (Online Mendelian Inheritance in Man(®)), and PubMed, for rare diseases with orofacial symptoms, and since 2013, the collected information has been incorporated into a web-based, freely accessible database. To date, 471 rare diseases with orofacial signs have been listed on ROMSE, and 10 main categories with 99 subcategories of signs such as different types of dental anomalies, changes in the oral mucosa, dysgnathia, and orofacial clefts, have been defined. The database provides a platform for general clinicians, orthodontists, and oral and maxillofacial surgeons to work on the best treatments.

  17. Go Online, while on Vacation!

    Science.gov (United States)

    Martin, Ron

    1989-01-01

    Describes MICROsearch, a self-contained system developed at the ERIC Clearinghouse on Information Resources for searching selected portions of the ERIC database on a microcomputer, and recommends that library media specialists use the program to teach basic online searching skills to teachers who are planning to take summer courses. (BBM)

  18. Genomic Database Searching.

    Science.gov (United States)

    Hutchins, James R A

    2017-01-01

    The availability of reference genome sequences for virtually all species under active research has revolutionized biology. Analyses of genomic variations in many organisms have provided insights into phenotypic traits, evolution and disease, and are transforming medicine. All genomic data from publicly funded projects are freely available in Internet-based databases, for download or searching via genome browsers such as Ensembl, Vega, NCBI's Map Viewer, and the UCSC Genome Browser. These online tools generate interactive graphical outputs of relevant chromosomal regions, showing genes, transcripts, and other genomic landmarks, and epigenetic features mapped by projects such as ENCODE.This chapter provides a broad overview of the major genomic databases and browsers, and describes various approaches and the latest resources for searching them. Methods are provided for identifying genomic locus and sequence information using gene names or codes, identifiers for DNA and RNA molecules and proteins; also from karyotype bands, chromosomal coordinates, sequences, motifs, and matrix-based patterns. Approaches are also described for batch retrieval of genomic information, performing more complex queries, and analyzing larger sets of experimental data, for example from next-generation sequencing projects.

  19. 基于数据库技术的古代中医治疗数据采集方法的研究%Research of Approach to Collecting Ancient TCM Treatment Data Based on Database Technology

    Institute of Scientific and Technical Information of China (English)

    李丹; 孙忠人; 姜德友; 范越; 闫朝升

    2012-01-01

    Objective: To explore an effective solution to the problem of standardization collection and information management for ancient TCM treatment data, and search for the feasible way of ancient TCM treatment data resources construction. Methods: Based on the conclusion of usual way to research ancient TCM treatment law and defects of existing data collection process, a kind of ancient TCM treatment data collection approach was put forward. Finally, based on database technology and visualization technology, the approach was applied to research works of ancient TCM treatment law. Practical results showed that the approach was scientific and effective. Results: This approach realized the collection , storage and management of ancient TCM treatment data. Conclusion: This approach can provide the systematic and standardization data sources for data analysis and data mining and the methodology basis for research on ancient TCM treatment data resources construction.%目的:探求古代中医治疗数据的规范化收集与信息化管理的有效方法,探寻古代中医治疗数据资源建设的可行途径.方法:在总结古代中医治疗规律研究的一般思路和现有数据采集过程的缺陷基础上,提出一种古代中医治疗数据采集方法.以特定的古代中医治疗规律研究工作为案例,利用数据库技术和可视化技术,验证该方法的科学性和有效性.结果:本方法实现了古代中医治疗数据的采集、存储和管理.结论:本方法能够为数据分析和数据挖掘提供系统、规范的原始数据源,并为古代中医治疗数据资源建设研究提供有效途径.

  20. S2RSLDB: a comprehensive manually curated, internet-accessible database of the sigma-2 receptor selective ligands.

    Science.gov (United States)

    Nastasi, Giovanni; Miceli, Carla; Pittalà, Valeria; Modica, Maria N; Prezzavento, Orazio; Romeo, Giuseppe; Rescifina, Antonio; Marrazzo, Agostino; Amata, Emanuele

    2017-01-01

    Sigma (σ) receptors are accepted as a particular receptor class consisting of two subtypes: sigma-1 (σ1) and sigma-2 (σ2). The two receptor subtypes have specific drug actions, pharmacological profiles and molecular characteristics. The σ2 receptor is overexpressed in several tumor cell lines, and its ligands are currently under investigation for their role in tumor diagnosis and treatment. The σ2 receptor structure has not been disclosed, and researchers rely on σ2 receptor radioligand binding assay to understand the receptor's pharmacological behavior and design new lead compounds. Here we present the sigma-2 Receptor Selective Ligands Database (S2RSLDB) a manually curated database of the σ2 receptor selective ligands containing more than 650 compounds. The database is built with chemical structure information, radioligand binding affinity data, computed physicochemical properties, and experimental radioligand binding procedures. The S2RSLDB is freely available online without account login and having a powerful search engine the user may build complex queries, sort tabulated results, generate color coded 2D and 3D graphs and download the data for additional screening. The collection here reported is extremely useful for the development of new ligands endowed of σ2 receptor affinity, selectivity, and appropriate physicochemical properties. The database will be updated yearly and in the near future, an online submission form will be available to help with keeping the database widely spread in the research community and continually updated. The database is available at http://www.researchdsf.unict.it/S2RSLDB.

  1. LHCb: Handling online information in the LHCb experiment

    CERN Multimedia

    Barandela Pazos, M D C

    2009-01-01

    The LHCb experiment is a complex particle physics detector, large amount of information is needed for its run time configuration, control and monitoring. All these data are stored in the three main logical databases of the online system: configuration database, archiving database and conditions database. The configuration database contains information needed by the online hardware and software components, like for example the electronics boards, high voltage and low voltage power supplies and trigger algorithms, to be configured, according to the partitioning mode (which components are needed) and running mode(which data are being produced: physics, cosmic, test, etc.). The archiving database contains all data read from hardware used for the monitoring and debugging of the experiment, like for example temperature readings. The third online database, the conditions database, contains a subset of the monitoring data, read from hardware, that are needed for physics processing and also some configuration data...

  2. A new database for time-series monitoring data: the NitroEurope approach

    Directory of Open Access Journals (Sweden)

    Owen SM

    2011-11-01

    Full Text Available The NitroEurope Integrated Project (2006-2011 aimed to gain a better understanding of the nitrogen cycle and its impacts on the European greenhouse gas balance. Over sixty project partners collected large volumes of data from sites all over Europe. There are currently more than 15 forest sites in 11 countries, including beech, oak, spruce and mixed forests. The collected data are at different temporal resolutions, from one-off measurements to 30-minute time-series data. Around 500 variables (plus attributes are measured, including soil and plant data, details of cultivation management for natural and manipulated sites, long-term datasets of flux and concentrations of greenhouse gas and pollutants and their precursors, and micrometeorology data. The NitroEurope research community therefore needed a database to provide easy upload and extraction of data for analysis, interpretation and modelling. A bespoke database with a web-based graphical user interface (GUI in a user-friendly and attractive online environment was produced by the NitroEurope (NitroEurope 2011 database development team. The software provides a flexible interface between Microsoft Excel workbooks and an Oracle database. The database “Form Manager” enables construction of database forms which reflect the project’s Excel data workbook templates. The software locates data according to Excel worksheet and cell references. The database “Uploader” extracts the specified data from completed Excel templates and uploads data directly to the Oracle relational database tables through the web front-end. Data are run through a series of automatic checks on upload which can be verified using an online graphing tool. Data are then validated and made available to the NitroEurope community for downloading. The database “Reporting” tools enable data from different sites and activities to be brought together and datasets can be previewed and graphed before they are downloaded. The

  3. The Danish Smoking Cessation Database

    DEFF Research Database (Denmark)

    Rasmussen, Mette; Tønnesen, Hanne

    2016-01-01

    , place or person working with a preventive aim. There are no age limits for registering a smoker in the database. Data collection: The SCDB contains prospectively collected baseline and outcome data on SC clinics, interventions, and individual smokers. Baseline data include socio-economic, demographic......Background: The Danish Smoking Cessation Database (SCDB) was established in 2001 as the first national healthcare register within the field of health promotion. Aim of the database: The aim of the SCDB is to document and evaluate smoking cessation (SC) interventions to assess and improve...... their quality. The database was also designed to function as a basis for register-based research projects. Study population The population includes smokers in Denmark who have been receiving a face-to-face SC intervention offered by an SC clinic affiliated with the SCDB. SC clinics can be any organisation...

  4. The Danish Fetal Medicine Database

    DEFF Research Database (Denmark)

    Ekelund, Charlotte K; Petersen, Olav Bjørn; Jørgensen, Finn S

    2015-01-01

    OBJECTIVE: To describe the establishment and organization of the Danish Fetal Medicine Database and to report national results of first-trimester combined screening for trisomy 21 in the 5-year period 2008-2012. DESIGN: National register study using prospectively collected first-trimester screening...... data from the Danish Fetal Medicine Database. POPULATION: Pregnant women in Denmark undergoing first-trimester screening for trisomy 21. METHODS: Data on maternal characteristics, biochemical and ultrasonic markers are continuously sent electronically from local fetal medicine databases (Astraia Gmbh......%. The national screen-positive rate increased from 3.6% in 2008 to 4.7% in 2012. The national detection rate of trisomy 21 was reported to be between 82 and 90% in the 5-year period. CONCLUSION: A national fetal medicine database has been successfully established in Denmark. Results from the database have shown...

  5. Competitive Intelligence: Finding the Clues Online.

    Science.gov (United States)

    Combs, Richard; Moorhead, John

    1990-01-01

    Defines and discusses competitive intelligence for business decision making and suggests the use of online databases to start looking for relevant information. The best databases to use are described, designing the search strategy is explained, reviewing and editing results are discussed, and the presentation of results is considered. (LRW)

  6. Open Source Vulnerability Database Project

    Directory of Open Access Journals (Sweden)

    Jake Kouns

    2008-06-01

    Full Text Available This article introduces the Open Source Vulnerability Database (OSVDB project which manages a global collection of computer security vulnerabilities, available for free use by the information security community. This collection contains information on known security weaknesses in operating systems, software products, protocols, hardware devices, and other infrastructure elements of information technology. The OSVDB project is intended to be the centralized global open source vulnerability collection on the Internet.

  7. PipeOnline 2.0: automated EST processing and functional data sorting.

    Science.gov (United States)

    Ayoubi, Patricia; Jin, Xiaojing; Leite, Saul; Liu, Xianghui; Martajaja, Jeson; Abduraham, Abdurashid; Wan, Qiaolan; Yan, Wei; Misawa, Eduardo; Prade, Rolf A

    2002-11-01

    Expressed sequence tags (ESTs) are generated and deposited in the public domain, as redundant, unannotated, single-pass reactions, with virtually no biological content. PipeOnline automatically analyses and transforms large collections of raw DNA-sequence data from chromatograms or FASTA files by calling the quality of bases, screening and removing vector sequences, assembling and rewriting consensus sequences of redundant input files into a unigene EST data set and finally through translation, amino acid sequence similarity searches, annotation of public databases and functional data. PipeOnline generates an annotated database, retaining the processed unigene sequence, clone/file history, alignments with similar sequences, and proposed functional classification, if available. Functional annotation is automatic and based on a novel method that relies on homology of amino acid sequence multiplicity within GenBank records. Records are examined through a function ordered browser or keyword queries with automated export of results. PipeOnline offers customization for individual projects (MyPipeOnline), automated updating and alert service. PipeOnline is available at http://stress-genomics.org.

  8. PipeOnline 2.0: automated EST processing and functional data sorting

    Science.gov (United States)

    Ayoubi, Patricia; Jin, Xiaojing; Leite, Saul; Liu, Xianghui; Martajaja, Jeson; Abduraham, Abdurashid; Wan, Qiaolan; Yan, Wei; Misawa, Eduardo; Prade, Rolf A.

    2002-01-01

    Expressed sequence tags (ESTs) are generated and deposited in the public domain, as redundant, un-annotated, single-pass reactions, with virtually no biological content. PipeOnline automatically analyses and transforms large collections of raw DNA-sequence data from chromatograms or FASTA files by calling the quality of bases, screening and removing vector sequences, assembling and rewriting consensus sequences of redundant input files into a unigene EST data set and finally through translation, amino acid sequence similarity searches, annotation of public databases and functional data. PipeOnline generates an annota ted database, retaining the processed unigene sequence, clone/file history, alignments with similar sequences, and proposed functional classification, if available. Functional annotation is automatic and based on a novel method that relies on homology of amino acid sequence multiplicity within GenBank records. Records are examined through a function ordered browser or keyword queries with automated export of results. PipeOnline offers customization for individual projects (MyPipeOnline), automated updating and alert service. PipeOnline is available at http://stress-genomics.org. PMID:12409467

  9. Medical Care Cost Recovery National Database (MCCR NDB)

    Data.gov (United States)

    Department of Veterans Affairs — The Medical Care Cost Recovery National Database (MCCR NDB) provides a repository of summary Medical Care Collections Fund (MCCF) billing and collection information...

  10. Tutoring Executives Online

    DEFF Research Database (Denmark)

    Bignoux, Stephane; Sund, Kristian J.

    2016-01-01

    Studies of learning and student satisfaction in the context of online university programs have largely neglected programs catering specifically to business executives. Such executives have typically been away from higher education for a number of years, and have collected substantial practical...... that in addition to some of the tutor behaviors already discussed in the literature, executive students look specifically for practical industry knowledge and experience in tutors, when judging how effective a tutor is. This has implications for both the recruitment and training of online executive MBA tutors....

  11. Biological Databases for Human Research

    Institute of Scientific and Technical Information of China (English)

    Dong Zou; Lina Ma; Jun Yu; Zhang Zhang

    2015-01-01

    The completion of the Human Genome Project lays a foundation for systematically studying the human genome from evolutionary history to precision medicine against diseases. With the explosive growth of biological data, there is an increasing number of biological databases that have been developed in aid of human-related research. Here we present a collection of human-related biological databases and provide a mini-review by classifying them into different categories according to their data types. As human-related databases continue to grow not only in count but also in volume, challenges are ahead in big data storage, processing, exchange and curation.

  12. Biological Databases for Human Research

    Science.gov (United States)

    Zou, Dong; Ma, Lina; Yu, Jun; Zhang, Zhang

    2015-01-01

    The completion of the Human Genome Project lays a foundation for systematically studying the human genome from evolutionary history to precision medicine against diseases. With the explosive growth of biological data, there is an increasing number of biological databases that have been developed in aid of human-related research. Here we present a collection of human-related biological databases and provide a mini-review by classifying them into different categories according to their data types. As human-related databases continue to grow not only in count but also in volume, challenges are ahead in big data storage, processing, exchange and curation. PMID:25712261

  13. AFSC/ABL:Coded-wire tag (CWT) database for NOAA Fisheries, Alaska

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Information on CWT salmonids throughout the Pacific region is available in an on-line coastwide database, the Regional Mark Information System (RMIS). This database...

  14. Online cognition: factors facilitating reliable online neuropsychological test results.

    Science.gov (United States)

    Feenstra, Heleen E M; Vermeulen, Ivar E; Murre, Jaap M J; Schagen, Sanne B

    2017-01-01

    Online neuropsychological test batteries could allow for large-scale cognitive data collection in clinical studies. However, the few online neuropsychological test batteries that are currently available often still require supervision or lack proper psychometric evaluation. In this paper, we have outlined prerequisites for proper development and use of online neuropsychological tests, with the focus on reliable measurement of cognitive function in an unmonitored setting. First, we identified several technical, contextual, and psychological factors that should be taken into account in order to facilitate reliable test results of online tests in the unmonitored setting. Second, we outlined a methodology of quality assurance needed in order to obtain reliable cognitive data in the long run. Based on factors that distinguish the online unmonitored test setting from the traditional face-to-face setting, we provide a set of basic requirements and suggestions for optimal development and use of unmonitored online neuropsychological tests, including suggestions on acquiring reliability, validity, and norm scores. When properly addressing factors that could hamper reliable test results during development and use, online neuropsychological tests could aid large-scale data collection for clinical studies in the future. Investment in both proper development of online neuropsychological test platforms and the performance of accompanying psychometric studies is currently required.

  15. Asbestos Exposure Assessment Database

    Science.gov (United States)

    Arcot, Divya K.

    2010-01-01

    Exposure to particular hazardous materials in a work environment is dangerous to the employees who work directly with or around the materials as well as those who come in contact with them indirectly. In order to maintain a national standard for safe working environments and protect worker health, the Occupational Safety and Health Administration (OSHA) has set forth numerous precautionary regulations. NASA has been proactive in adhering to these regulations by implementing standards which are often stricter than regulation limits and administering frequent health risk assessments. The primary objective of this project is to create the infrastructure for an Asbestos Exposure Assessment Database specific to NASA Johnson Space Center (JSC) which will compile all of the exposure assessment data into a well-organized, navigable format. The data includes Sample Types, Samples Durations, Crafts of those from whom samples were collected, Job Performance Requirements (JPR) numbers, Phased Contrast Microscopy (PCM) and Transmission Electron Microscopy (TEM) results and qualifiers, Personal Protective Equipment (PPE), and names of industrial hygienists who performed the monitoring. This database will allow NASA to provide OSHA with specific information demonstrating that JSC s work procedures are protective enough to minimize the risk of future disease from the exposures. The data has been collected by the NASA contractors Computer Sciences Corporation (CSC) and Wyle Laboratories. The personal exposure samples were collected from devices worn by laborers working at JSC and by building occupants located in asbestos-containing buildings.

  16. Geothermal resource areas database for monitoring the progress of development in the United States

    Energy Technology Data Exchange (ETDEWEB)

    Lawrence, J.D.; Lepman, S.R.; Leung, K.; Phillips, S.L.

    1981-01-01

    The Geothermal Resource Areas Database (GRAD) and associated data system provide broad coverage of information on the development of geothermal resources in the United States. The system is designed to serve the information requirements of the National Progress Monitoring System. GRAD covers development from the initial exploratory phase through plant construction and operation. Emphasis is on actual facts or events rather than projections and scenarios. The selection and organization of data are based on a model of geothermal development. Subjects in GRAD include: names and addresses, leases, area descriptions, geothermal wells, power plants, direct use facilities, and environmental and regulatory aspects of development. Data collected in the various subject areas are critically evaluated, and then entered into an on-line interactive computer system. The system is publically available for retrieval and use. The background of the project, conceptual development, software development, and data collection are described here. Appendices describe the structure of the database in detail.

  17. Tutoring Executives Online

    DEFF Research Database (Denmark)

    Bignoux, Stephane; Sund, Kristian J.

    2016-01-01

    Studies of learning and student satisfaction in the context of online university programs have largely neglected programs catering specifically to business executives. Such executives have typically been away from higher education for a number of years, and have collected substantial practical...... experience in the subject matters they are taught. Their expectations in terms of both content and delivery may therefore be different from non-executive students. We explore perceptions of the quality of tutoring in the context of an online executive MBA program through participant interviews. We find...... that in addition to some of the tutor behaviors already discussed in the literature, executive students look specifically for practical industry knowledge and experience in tutors, when judging how effective a tutor is. This has implications for both the recruitment and training of online executive MBA tutors....

  18. Database development and management

    CERN Document Server

    Chao, Lee

    2006-01-01

    Introduction to Database Systems Functions of a DatabaseDatabase Management SystemDatabase ComponentsDatabase Development ProcessConceptual Design and Data Modeling Introduction to Database Design Process Understanding Business ProcessEntity-Relationship Data Model Representing Business Process with Entity-RelationshipModelTable Structure and NormalizationIntroduction to TablesTable NormalizationTransforming Data Models to Relational Databases .DBMS Selection Transforming Data Models to Relational DatabasesEnforcing ConstraintsCreating Database for Business ProcessPhysical Design and Database

  19. Social Capital Database

    DEFF Research Database (Denmark)

    Paldam, Martin; Svendsen, Gert Tinggaard

    2005-01-01

      This report has two purposes: The first purpose is to present our 4-page question­naire, which measures social capital. It is close to the main definitions of social capital and contains the most successful measures from the literature. Also it is easy to apply as discussed. The second purpose ...... is to present the social capital database we have collected for 21 countries using the question­naire. We do this by comparing the level of social capital in the countries covered. That is, the report compares the marginals from the 21 surveys....

  20. Social Capital Database

    DEFF Research Database (Denmark)

    Paldam, Martin; Svendsen, Gert Tinggaard

    2005-01-01

      This report has two purposes: The first purpose is to present our 4-page question­naire, which measures social capital. It is close to the main definitions of social capital and contains the most successful measures from the literature. Also it is easy to apply as discussed. The second purpose ...... is to present the social capital database we have collected for 21 countries using the question­naire. We do this by comparing the level of social capital in the countries covered. That is, the report compares the marginals from the 21 surveys....

  1. Online Tracking

    Science.gov (United States)

    ... Making Money Privacy, Identity & Online Security Blog Video & Media Scam Alerts ... Feed Facebook YouTube Twitter The Federal Trade Commission (FTC) is the nation’s consumer protection agency. ...

  2. Q-bank phytoplasma database

    DEFF Research Database (Denmark)

    Contaldo, Nicoletta; Bertaccini, Assunta; Nicolaisen, Mogens

    2014-01-01

    The setting of the Q-Bank database free available on line for quarantine phytoplasma and also for general phytoplasma identification is described. The tool was developed in the frame of the EU-FP7 project Qbol and is linked with a new project Q-collect in order to made widely available the identi......The setting of the Q-Bank database free available on line for quarantine phytoplasma and also for general phytoplasma identification is described. The tool was developed in the frame of the EU-FP7 project Qbol and is linked with a new project Q-collect in order to made widely available...

  3. Online dictionaries

    DEFF Research Database (Denmark)

    Tarp, Sven

    2012-01-01

    This article initially provides a panoramic overview and a preliminary typologization of present and future online dictionaries based upon their application of the available technologies and suggests that the future of lexicography will be the development of highly sophisticated tools which may......, need, consultation, and data. The article then proceeds to the discussion of some advanced information science techniques that may contribute to the desired individualization. Upon this basis, it finally discusses the interaction between online dictionaries and external sources like the Internet...

  4. Online marketing

    OpenAIRE

    Zrůst, Daniel

    2013-01-01

    The aim of this thesis is to evaluate pay per click marketing as suitable marketing tool for promotion and distribution of a given product. The paper describes basic vocabulary related to PPC advertising, common metrics, tools used by online marketers, and logic of running PPC campaigns. The paper also tries to quantify impact of Internet on economies. The second part applies the theory to analysis of consumers' conversion path while searching online in common search engines where PPC marketi...

  5. The GraVent DDT database

    Science.gov (United States)

    Boeck, Lorenz R.; Katzy, Peter; Hasslberger, Josef; Kink, Andreas; Sattelmayer, Thomas

    2016-09-01

    An open-access online platform containing data from experiments on deflagration-to-detonation transition conducted at the Institute of Thermodynamics, Technical University of Munich, has been developed and is accessible at http://www.td.mw.tum.de/ddt. The database provides researchers working on explosion dynamics with data for theoretical analyses and for the validation of numerical simulations.

  6. Adaptive indexing in modern database kernels

    NARCIS (Netherlands)

    Idreos, S.; Manegold, S.; Graefe, G.

    2012-01-01

    Physical design represents one of the hardest problems for database management systems. Without proper tuning, systems cannot achieve good performance. Offline indexing creates indexes a priori assuming good workload knowledge and idle time. More recently, online indexing monitors the workload trend

  7. Multi-Database Searching in Forensic Psychology.

    Science.gov (United States)

    Piotrowski, Chris; Perdue, Robert W.

    Traditional library skills have been augmented since the introduction of online computerized database services. Because of the complexity of the field, forensic psychology can benefit enormously from the application of comprehensive bibliographic search strategies. The study reported here demonstrated the bibliographic results obtained when a…

  8. Classics Online.

    Science.gov (United States)

    Clayman, Dee L.

    1995-01-01

    Appraises several databases devoted to classical literature. Thesaurus Linguae Graecae (TLG) contains the entire extant corpus of ancient Greek literature, including works on lexicography and historiography, extending into the 15th century. Other works awaiting completion are the Database of Classical Bibliography and a CD-ROM pictorial dictionary…

  9. A unique database for gathering data from a mobile app and medical prescription software: a useful data source to collect and analyse patient-reported outcomes of depression and anxiety symptoms.

    Science.gov (United States)

    Watanabe, Yoshinori; Hirano, Yoko; Asami, Yuko; Okada, Maki; Fujita, Kazuya

    2017-11-01

    A unique database named 'AN-SAPO' was developed by Iwato Corp. and Japan Brain Corp. in collaboration with the psychiatric clinics run by Himorogi Group in Japan. The AN-SAPO database includes patients' depression/anxiety score data from a mobile app named AN-SAPO and medical records from medical prescription software named 'ORCA'. On the mobile app, depression/anxiety severity can be evaluated by answering 20 brief questions and the scores are transferred to the AN-SAPO database together with the patients' medical records on ORCA. Currently, this database is used at the Himorogi Group's psychiatric clinics and has over 2000 patients' records accumulated since November 2013. Since the database covers patients' demographic data, prescribed drugs, and the efficacy and safety information, it could be a useful supporting tool for decision-making in clinical practice. We expect it to be utilised in wider areas of medical fields and for future pharmacovigilance and pharmacoepidemiological studies.

  10. Application of cadastre database system in collective land tenure%地籍数据库系统在集体土地使用权中的应用

    Institute of Scientific and Technical Information of China (English)

    朱会保

    2015-01-01

    对廊坊市城镇地籍数据库管理系统的组成和数据交换格式进行了介绍,分析了地籍数据导入数据库前的注意事项,并对城镇地籍数据库的更新升级工作进行了归纳总结,有助于地籍数据库建设工作的有效、规范进行。%The paper introduces Langfang urban cadastre database management system composition and database exchange format,analyzes mat-ters needing attention in introducing cadastre database,and summarizes urban cadastre database renovation,which will be some help for effective-ly building cadastre database.

  11. The Karlsruhe Astrophysical Database of Nucleosynthesis in Stars Project - Status and Prospects

    CERN Document Server

    Dillmann, Iris; Fülöp, Zsolt; Plag, Ralf; Käppeler, Franz; Rauscher, Thomas

    2014-01-01

    The KADoNiS (Karlsruhe Astrophysical Database of Nucleosynthesis in Stars) project is an astrophysical online database for cross sections relevant for nucleosynthesis in the $s$ process and the $\\gamma$ process. The $s$-process database (www.kadonis.org) was started in 2005 and is presently facing its 4th update (KADoNiS v1.0). The $\\gamma$-process database (KADoNiS-p, www.kadonis.org/pprocess) was recently revised and re-launched in March 2013. Both databases are compilations for experimental cross sections with relevance to heavy ion nucleosynthesis. For the $s$ process recommended Maxwellian averaged cross sections for $kT$= 5-100~keV are given for more than 360 isotopes between $^{1}$H and $^{210}$Bi. For the $\\gamma$-process database all available experimental data from $(p,\\gamma), (p,n), (p,\\alpha), (\\alpha,\\gamma), (\\alpha,n)$, and $(\\alpha,p)$ reactions between $^{70}$Ge and $^{209}$Bi in or close to the respective Gamow window were collected and can be compared to theoretical predictions. The aim of...

  12. Databases and Search Services North of the Border.

    Science.gov (United States)

    Janke, Richard V.

    This paper presents an overview of the major Canadian online systems, which account for approximately 5% of information vendors and databases worldwide. Also described is DATAPAC, Canada's national telecommunications network, and DATAPAC's X.75 interface with TELENET, TYMNET, UNINET, and France's TRANSPAC. The online systems described include: (1)…

  13. Methow and Columbia Rivers studies: summary of data collection, comparison of database structure and habitat protocols, and impact of additional PIT tag interrogation systems to survival estimates, 2008-2012

    Science.gov (United States)

    Martens, Kyle D.; Tibbits, Wesley T.; Watson, Grace A.; Newsom, Michael A.; Connolly, Patrick J.

    2014-01-01

    designed to show some initial analysis and to disseminate summary information that could potentially be used in ongoing modeling efforts by USGS, Reclamation, and University of Idaho. The second chapter documents the database of fish and habitat data collected by USGS from 2004 through 2012 and compares USGS habitat protocols to the Columbia Habitat Monitoring Program (CHaMP) protocol. The third chapter is a survival analysis of fish moving through Passive Integrated Transponder (PIT) tag interrogation systems in the Methow and Columbia Rivers. It examines the effects of adding PIT tags and/or PIT tag interrogation systems on survival estimates of juvenile steelhead and Chinook salmon.

  14. Glacier Photograph Collection

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Glacier Photograph Collection is a database of photographs of glaciers from around the world, some dating back to the mid-1850's, that provide an historical...

  15. A High Energy Nuclear Database Proposal

    CERN Document Server

    Brown, D A; Brown, David A.; Vogt, Ramona

    2005-01-01

    We propose to develop a high-energy heavy-ion experimental database and make it accessible to the scientific community through an on-line interace. This database will be searchable and cross-indexed with relevant publications, including published detector descriptions. Since this database will be a community resource, it requires the high-energy nuclear physics community's financial and manpower support. This database should eventually contain all published data from the Bevalac, AGS and SPS to RHIC and LHC energies, proton-proton to nucleus-nucleus collisions as well as other relevant systems and all measured observables. Such a database would have tremendous scientific payoff as it makes systematic studies easier and allows simpler benchmarking of theoretical models to a broad range of old and new experiments. Furthermore, there is a growing need for compilations of high-energy nuclear data for applications including stockpile stewardship, technology development for intertial confinement fusion and target a...

  16. Proposal for a High Energy Nuclear Database

    CERN Document Server

    Vogt, D A B R

    2005-01-01

    We propose to develop a high-energy heavy-ion experimental database and make it accessible to the scientific community through an on-line interface. This database will be searchable and cross-indexed with relevant publications, including published detector descriptions. Since this database will be a community resource, it requires the high-energy nuclear physics community's financial and manpower support. This database should eventually contain all published data from Bevalac, AGS and SPS to RHIC and LHC energies, proton-proton to nucleus-nucleus collisions as well as other relevant systems, and all measured observables. Such a database would have tremendous scientific payoff as it makes systematic studies easier and allows simpler benchmarking of theoretical models to a broad range of old and new experiments. Furthermore, there is a growing need for compilations of high-energy nuclear data for applications including stockpile stewardship, technology development for inertial confinement fusion and target and ...

  17. 77 FR 5023 - Agency Information Collection Activities: Proposed Collection; Comment Request

    Science.gov (United States)

    2012-02-01

    ... collection project: ``Medical Office Survey on Patient Safety Culture Comparative Database.'' In accordance... Project Medical Office Survey on Patient Safety Culture Comparative Database The Agency for Healthcare... Patient Safety Culture (Medical Office SOPS) Comparative Database. The Medical Office SOPS...

  18. Databases and their application

    NARCIS (Netherlands)

    E.C. Grimm; R.H.W Bradshaw; S. Brewer; S. Flantua; T. Giesecke; A.M. Lézine; H. Takahara; J.W.,Jr Williams

    2013-01-01

    During the past 20 years, several pollen database cooperatives have been established. These databases are now constituent databases of the Neotoma Paleoecology Database, a public domain, multiproxy, relational database designed for Quaternary-Pliocene fossil data and modern surface samples. The poll

  19. EuPathDB: the eukaryotic pathogen genomics database resource

    Science.gov (United States)

    Aurrecoechea, Cristina; Barreto, Ana; Basenko, Evelina Y.; Brestelli, John; Brunk, Brian P.; Cade, Shon; Crouch, Kathryn; Doherty, Ryan; Falke, Dave; Fischer, Steve; Gajria, Bindu; Harb, Omar S.; Heiges, Mark; Hertz-Fowler, Christiane; Hu, Sufen; Iodice, John; Kissinger, Jessica C.; Lawrence, Cris; Li, Wei; Pinney, Deborah F.; Pulman, Jane A.; Roos, David S.; Shanmugasundram, Achchuthan; Silva-Franco, Fatima; Steinbiss, Sascha; Stoeckert, Christian J.; Spruill, Drew; Wang, Haiming; Warrenfeltz, Susanne; Zheng, Jie

    2017-01-01

    The Eukaryotic Pathogen Genomics Database Resource (EuPathDB, http://eupathdb.org) is a collection of databases covering 170+ eukaryotic pathogens (protists & fungi), along with relevant free-living and non-pathogenic species, and select pathogen hosts. To facilitate the discovery of meaningful biological relationships, the databases couple preconfigured searches with visualization and analysis tools for comprehensive data mining via intuitive graphical interfaces and APIs. All data are analyzed with the same workflows, including creation of gene orthology profiles, so data are easily compared across data sets, data types and organisms. EuPathDB is updated with numerous new analysis tools, features, data sets and data types. New tools include GO, metabolic pathway and word enrichment analyses plus an online workspace for analysis of personal, non-public, large-scale data. Expanded data content is mostly genomic and functional genomic data while new data types include protein microarray, metabolic pathways, compounds, quantitative proteomics, copy number variation, and polysomal transcriptomics. New features include consistent categorization of searches, data sets and genome browser tracks; redesigned gene pages; effective integration of alternative transcripts; and a EuPathDB Galaxy instance for private analyses of a user's data. Forthcoming upgrades include user workspaces for private integration of data with existing EuPathDB data and improved integration and presentation of host–pathogen interactions. PMID:27903906

  20. EuPathDB: the eukaryotic pathogen genomics database resource.

    Science.gov (United States)

    Aurrecoechea, Cristina; Barreto, Ana; Basenko, Evelina Y; Brestelli, John; Brunk, Brian P; Cade, Shon; Crouch, Kathryn; Doherty, Ryan; Falke, Dave; Fischer, Steve; Gajria, Bindu; Harb, Omar S; Heiges, Mark; Hertz-Fowler, Christiane; Hu, Sufen; Iodice, John; Kissinger, Jessica C; Lawrence, Cris; Li, Wei; Pinney, Deborah F; Pulman, Jane A; Roos, David S; Shanmugasundram, Achchuthan; Silva-Franco, Fatima; Steinbiss, Sascha; Stoeckert, Christian J; Spruill, Drew; Wang, Haiming; Warrenfeltz, Susanne; Zheng, Jie

    2017-01-04

    The Eukaryotic Pathogen Genomics Database Resource (EuPathDB, http://eupathdb.org) is a collection of databases covering 170+ eukaryotic pathogens (protists & fungi), along with relevant free-living and non-pathogenic species, and select pathogen hosts. To facilitate the discovery of meaningful biological relationships, the databases couple preconfigured searches with visualization and analysis tools for comprehensive data mining via intuitive graphical interfaces and APIs. All data are analyzed with the same workflows, including creation of gene orthology profiles, so data are easily compared across data sets, data types and organisms. EuPathDB is updated with numerous new analysis tools, features, data sets and data types. New tools include GO, metabolic pathway and word enrichment analyses plus an online workspace for analysis of personal, non-public, large-scale data. Expanded data content is mostly genomic and functional genomic data while new data types include protein microarray, metabolic pathways, compounds, quantitative proteomics, copy number variation, and polysomal transcriptomics. New features include consistent categorization of searches, data sets and genome browser tracks; redesigned gene pages; effective integration of alternative transcripts; and a EuPathDB Galaxy instance for private analyses of a user's data. Forthcoming upgrades include user workspaces for private integration of data with existing EuPathDB data and improved integration and presentation of host-pathogen interactions.