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Sample records for newly planted rice

  1. Characteristics and land suitability of newly establish rice field in Lesung Batu Muda, Rawas Ulu, Musi Rawas, South Sumatera

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    R Sudaryanto

    2015-04-01

    Full Text Available Rice field has a strategic function because it is the main provider of food for the population of Indonesia. The data of the land use for the rice field in Indonesia showed that around 41% in Java Island. Agricultural technology at the level of industry experienced rapid progress, but the technology implementation at the level by farmer is relatively slow. Increased production of rice in Indonesia was reported of less than 1% per year. The research aimed to study the characteristics and land suitability of newly established rice field in Lesung Batu Muda, Rawas Ulu, Musi Rawas, South Sumatera. There were two soil land units that were tested included water availability, rooting medium, level of erosion, soil chemical properties and land preparation. The results of the study showed that newly established rice fields in Lesung Batu Muda, Rawas Ulu, Musi Rawas, South Sumatera could be used to open new rice fields by planting twice a year. In opening new rice fields, the application of organic matter and creation of terracing on sloping areas were needed.

  2. Prevalence of Rice Yellow Mottle Virus (RYMV) on Rice Plants ...

    African Journals Online (AJOL)

    Abstract. Incidence of Rice yellow mottle virus (RYMV) on rice plants (ofada) grown in two local government areas (LGAs) of Ogun State had been evaluated during a two year field survey. Six month old rice plants were observed for symptom expression and leaf samples collected for serological indexing. Of the 60 leaf ...

  3. Realistic Simulation of Rice Plant

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    Wei-long DING

    2011-09-01

    Full Text Available The existing research results of virtual modeling of rice plant, however, is far from perfect compared to that of other crops due to its complex structure and growth process. Techniques to visually simulate the architecture of rice plant and its growth process are presented based on the analysis of the morphological characteristics at different stages. Firstly, the simulations of geometrical shape, the bending status and the structural distortion of rice leaves are conducted. Then, by using an improved model for bending deformation, the curved patterns of panicle axis and various types of panicle branches are generated, and the spatial shape of rice panicle is therefore created. Parametric L-system is employed to generate its topological structures, and finite-state automaton is adopted to describe the development of geometrical structures. Finally, the computer visualization of three-dimensional morphologies of rice plant at both organ and individual levels is achieved. The experimental results showed that the proposed methods of modeling the three-dimensional shapes of organs and simulating the growth of rice plant are feasible and effective, and the generated three-dimensional images are realistic.

  4. Increasing rice plant growth by Trichoderma sp.

    Science.gov (United States)

    Doni, Febri; Isahak, Anizan; Zain, Che Radziah Che Mohd; Sulaiman, Norela; Fathurahman, F.; Zain, Wan Nur Syazana Wan Mohd.; Kadhimi, Ahsan A.; Alhasnawi, Arshad Naji; Anhar, Azwir; Yusoff, Wan Mohtar Wan

    2016-11-01

    Trichoderma sp. is a plant growth promoting fungi in many crops. Initial observation on the ability to enhance rice germination and vigor have been reported. In this study, the effectiveness of a local isolate Trichoderma asprellum SL2 to enhance rice seedling growth was assessed experimentally under greenhouse condition using a completely randomized design. Results showed that inoculation of rice plants with Trichoderma asprellum SL2 significantly increase rice plants height, root length, wet weight, leaf number and biomass compared to untreated rice plants (control). The result of this study can serve as a reference for further work on the application of beneficial microorganisms to enhance rice production.

  5. Characteristics of bread prepared from wheat flours blended with various kinds of newly developed rice flours.

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    Nakamura, S; Suzuki, K; Ohtsubo, K

    2009-04-01

    Characteristics of the bread prepared from wheat flour blended with the flour of various kinds of newly developed rice cultivars were investigated. Qualities of the bread made from wheat flour blended with rice flour have been reported to be inferior to those from 100% wheat flour bread. To improve its qualities, we searched for the new-characteristic rice flours among the various kinds of newly developed rice cultivars to blend with the wheat flour for the bread preparation. The most suitable new characteristic rices are combination of purple waxy rice, high-amylose rice, and sugary rice. Specific volume of the bread from the combination of wheat and these 3 kinds of rice flours showed higher specific volume (3.93) compared with the traditional wheat/rice bread (3.58). We adopted the novel method, continuous progressive compression test, to measure the physical properties of the dough and the bread in addition to the sensory evaluation. As a result of the selection of the most suitable rice cultivars and blending ratio with the wheat flour, we could develop the novel wheat/rice bread, of which loaf volume, physical properties, and tastes are acceptable and resistant to firming on even 4 d after the bread preparation. To increase the ratio of rice to wheat, we tried to add a part of rice as cooked rice grains. The specific volume and qualities of the bread were maintained well although the rice content of total flour increased from 30% to 40%.

  6. Creation of transgenic rice plants producing small interfering RNA of Rice tungro spherical virus.

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    Le, Dung Tien; Chu, Ha Duc; Sasaya, Takahide

    2015-01-01

    Rice tungro spherical virus (RTSV), also known as Rice waika virus, does not cause visible symptoms in infected rice plants. However, the virus plays a critical role in spreading Rice tungro bacilliform virus (RTBV), which is the major cause of severe symptoms of rice tungro disease. Recent studies showed that RNA interference (RNAi) can be used to develop virus-resistance transgenic rice plants. In this report, we presented simple procedures and protocols needed for the creation of transgenic rice plants capable of producing small interfering RNA specific against RTSV sequences. Notably, our study showed that 60 out of 64 individual hygromycin-resistant lines (putative transgenic lines) obtained through transformation carried transgenes designed for producing hairpin double-stranded RNA. Northern blot analyses revealed the presence of small interfering RNA of 21- to 24-mer in 46 out of 56 confirmed transgenic lines. Taken together, our study indicated that transgenic rice plants carrying an inverted repeat of 500-bp fragments encoding various proteins of RTSV can produce small interfering RNA from the hairpin RNA transcribed from that transgene. In light of recent studies with other viruses, it is possible that some of these transgenic rice lines might be resistant to RTSV.

  7. Newly Identified Wild Rice Accessions Conferring High Salt Tolerance Might Use a Tissue Tolerance Mechanism in Leaf

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    Prusty, Manas R.; Kim, Sung-Ryul; Vinarao, Ricky; Entila, Frederickson; Egdane, James; Diaz, Maria G. Q.; Jena, Kshirod K.

    2018-01-01

    + sequestration in leaf might be occurring independent of tonoplast-localized OsNHX1. The newly isolated wild rice accessions will be valuable materials for both rice improvement to salinity stress and the study of salt tolerance mechanism in plants. PMID:29740456

  8. Temporal changes of radiocesium in irrigated paddy fields and its accumulation in rice plants in Fukushima.

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    Yang, Baolu; Onda, Yuichi; Wakiyama, Yoshifumi; Yoshimura, Kazuya; Sekimoto, Hitoshi; Ha, Yiming

    2016-01-01

    About half of the total paddy field area, which is the dominant agricultural land in Fukushima Prefecture, was contaminated by radiocesium released by the Fukushima Daiichi Nuclear Power Plant accident. In this study, we investigated the temporal changes of radiocesium in soil, irrigation water, and rice plant in two adjacent rice paddies, with and without surface-soil-removal, in Fukushima Prefecture for over three years (2012-2014) after the nuclear accident. Our results showed that radiocesium migrated into 24-28 cm soil layers and that the activity concentration of radiocesium in paddy soils showed a significant reduction in 2014. The newly added radiocesium to paddies through irrigation water contributed only a maximum value of 0.15% and 0.75% of the total amount present in control and decontaminated paddies, respectively, throughout the study period. The radiocesium activity concentration in suspended sediment in irrigation water exponentially decreased, and the effective half-lives (Teff) for (137)Cs and (134)Cs were 1.3 and 0.9 years, respectively. Additionally, the average suspended sediment concentration in irrigation water increased between 2012 and 2014, suggesting that enhanced soil erosion had occurred in the surrounding environment. Radiocesium accumulation in rice plant also decreased with time in both paddies. However, the concentration ratio of radiocesium for rice plant in the decontaminated paddy increased compared with control paddy, despite approximately 96% of fallout radiocesium removed in paddy soil. Further analysis is required to clarify the reasons of high concentration ratio of radiocesium for rice plant in the decontaminated paddy. Copyright © 2015 Elsevier Ltd. All rights reserved.

  9. Uptake of C-14 tagged acetate by rice in a paddy soil-to-rice plant system

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    Ishii, Nobuyoshi; Tagami, Keiko; Uchida, Shigeo [Research Center for Radiation Protection, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage, Chiba 263-8555 (Japan)

    2014-07-01

    Geological disposal of Transuranic (TRU) waste is planned to avoid radiation exposure to the public. One of the dominant nuclides contributing to the dose from TRU waste is C-14, which is long-lived and has very poor sorption properties on natural geological media. Therefore, there are some concerns regarding possible migration of C-14 to the living environments. For the public health safety, it is necessary to clarify pathways of C-14 to human beings in the environment. Intake of C-14 from food source is one of important pathways. In the present study, we examined transfer of C-14 to various parts of rice plant in a paddy soil-to-rice plant system. Rice seedlings in Wagner pots (n=12) were grown for about two months from 7 May 2012 under natural light. The grown plants were moved to a closed chamber on 5 July 2012. The rice plants were grown without water supply from 5 July 2012, and then one liter of C-14 tagged acetate (1.85 MBq) was supplied to the rice plants in the spiked group (n=8) just once on 9 July 2012. For the rice plants in the control group (n=4), uncontaminated water was supplied. These rice plants were air-dried after a harvest on 23 August 2012 and divided into four parts: white rice, bran, rice husk, and the stem and leaf part. The activities of C-14 in the divided parts and air-dried soil samples were determined with a liquid scintillation counting system. Radiocarbon was detected even in the rice plants of the control group. However, the C-14 activity in the soil of the control group was less than the detection limit (1.0 Bq/g). The C-14 activities for the control group decreased in the order of rice husk, bran, white rice, and the stem and leaf part. The detection of C-14 in the control group may be caused by the release of C-14 tagged carbon dioxide from the spiked group. That is, C-14 tagged acetate was converted to carbon dioxide by microbial activity in the spiked group, and then some of the released carbon dioxide was assimilated into

  10. Rice is the seed of the monocot plants Oryza sativa (Asian rice) or ...

    African Journals Online (AJOL)

    BIOTECH

    2013-10-16

    Oct 16, 2013 ... of culture. The regenerated plantlets were transferred to pots for acclimatization. About 80% of plants were survived in the greenhouse condition. Key words: Somatic embryogenesis, immature zygotic embryos, Indica rice, plant regeneration. INTRODUCTION. Rice (Oryza sativa L.) is one of the most ...

  11. Transgenic rice plants expressing synthetic cry2AX1 gene exhibits resistance to rice leaffolder (Cnaphalocrosis medinalis).

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    Manikandan, R; Balakrishnan, N; Sudhakar, D; Udayasuriyan, V

    2016-06-01

    Bacillus thuringiensis is a major source of insecticidal genes imparting insect resistance in transgenic plants. Level of expression of transgenes in transgenic plants is important to achieve desirable level of resistance against target insects. In order to achieve desirable level of expression, rice chloroplast transit peptide sequence was fused with synthetic cry2AX1 gene to target its protein in chloroplasts. Sixteen PCR positive lines of rice were generated by Agrobacterium mediated transformation using immature embryos. Southern blot hybridization analysis of T 0 transgenic plants confirmed the integration of cry2AX1 gene in two to five locations of rice genome and ELISA demonstrated its expression. Concentration of Cry2AX1 in transgenic rice events ranged 5.0-120 ng/g of fresh leaf tissue. Insect bioassay of T 0 transgenic rice plants against neonate larvae of rice leaffolder showed larval mortality ranging between 20 and 80 % in comparison to control plant. Stable inheritance and expression of cry2AX1 gene was demonstrated in T 1 progenies through Southern and ELISA. In T 1 progenies, the highest concentration of Cry2AX1 and mortality of rice leaffolder larvae were recorded as 150 ng/g of fresh leaf tissue and 80 %, respectively. The Cry2AX1 expression even at a very low concentration (120-150 ng/g) in transgenic rice plants was found effective against rice leaffolder larvae.

  12. Do rice water weevils and rice stem borers compete when sharing a host plant?

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    Shi, Sheng-Wei; He, Yan; Ji, Xiang-Hua; Jiang, Ming-Xing; Cheng, Jia-An

    2008-07-01

    The rice water weevil (RWW) Lissorhoptrus oryzophilus Kuschel (Coleoptera: Curculionidae) is an invasive insect pest of rice Oryza sativa L. in China. Little is known about the interactions of this weevil with indigenous herbivores. In the present study, adult feeding and population density of the weevil, injury level of striped stem borer Chilo suppressalis (Walker) (Lepidoptera: Pyralidae) and pink stem borer Sesamia inferens (Walker) (Lepidoptera: Noctuidae) to rice, as well as growth status of their host plants were surveyed in a rice field located in Southeastern Zhejiang, China, in 2004 with the objective to discover interspecific interactions on the rice. At tillering stage, both adult feeding of the weevil and injury of the stem borers tended to occur on larger tillers (bearing 5 leaves) compared with small tillers (bearing 2~4 leaves), but the insects showed no evident competition with each other. At booting stage, the stem borers caused more withering/dead hearts and the weevil reached a higher density on the plants which had more productive tillers and larger root system; the number of weevils per tiller correlated negatively with the percentage of withering/dead hearts of plants in a hill. These observations indicate that interspecific interactions exist between the rice water weevil and the rice stem borers with negative relations occurring at booting or earlier developmental stages of rice.

  13. Do rice water weevils and rice stem borers compete when sharing a host plant?*

    Science.gov (United States)

    Shi, Sheng-wei; He, Yan; Ji, Xiang-hua; Jiang, Ming-xing; Cheng, Jia-an

    2008-01-01

    The rice water weevil (RWW) Lissorhoptrus oryzophilus Kuschel (Coleoptera: Curculionidae) is an invasive insect pest of rice Oryza sativa L. in China. Little is known about the interactions of this weevil with indigenous herbivores. In the present study, adult feeding and population density of the weevil, injury level of striped stem borer Chilo suppressalis (Walker) (Lepidoptera: Pyralidae) and pink stem borer Sesamia inferens (Walker) (Lepidoptera: Noctuidae) to rice, as well as growth status of their host plants were surveyed in a rice field located in Southeastern Zhejiang, China, in 2004 with the objective to discover interspecific interactions on the rice. At tillering stage, both adult feeding of the weevil and injury of the stem borers tended to occur on larger tillers (bearing 5 leaves) compared with small tillers (bearing 2~4 leaves), but the insects showed no evident competition with each other. At booting stage, the stem borers caused more withering/dead hearts and the weevil reached a higher density on the plants which had more productive tillers and larger root system; the number of weevils per tiller correlated negatively with the percentage of withering/dead hearts of plants in a hill. These observations indicate that interspecific interactions exist between the rice water weevil and the rice stem borers with negative relations occurring at booting or earlier developmental stages of rice. PMID:18600788

  14. Demethylation of methylmercury in growing rice plants: An evidence of self-detoxification

    International Nuclear Information System (INIS)

    Xu, Xiaohan; Zhao, Jiating; Li, Yunyun; Fan, Yuqin; Zhu, Nali; Gao, Yuxi; Li, Bai; Liu, Hanyu; Li, Yu-Feng

    2016-01-01

    Mercury (Hg) is a global pollutant that poses a serious threat to human and the environment. Rice was found as an important source for human exposure to Hg in some areas. In this study, the transportation and transformation of IHg and MeHg in rice plants exposed to IHg or MeHg were investigated. The IHg and MeHg concentrations in rice roots and shoots collected every five days were analyzed by HPLC-ICP-MS and SR-XANES. When exposed to MeHg, the percent of IHg in rice roots and shoots increased while MeHg decreased significantly, suggesting prominent demethylation of MeHg occurred. However no notable MeHg was found in both roots and shoots of rice plant when exposed to IHg. SR-XANES analysis further confirmed the demethylation of MeHg with rice. This study provides a new finding that demethylation of MeHg could occur in growing rice, which may be a self-defense process of rice plant. - Graphical abstract: Inorganic mercury in Rice (Oryza sativa L.) plants exposed to methylmercury was detected: An evidence of rice plant against methylmercury phytotoxicity. Display Omitted - Highlights: • Demethylation of MeHg in rice plant was found in rice root. • Hg in rice roots mainly present as MeHg-SR or RS-Hg-SR form. • MeHg-SR in roots can be gradually transformed to RS-Hg-SR with rice growth. - Demethylation of MeHg in growing rice.

  15. Overexpression of rice serotonin N-acetyltransferase 1 in transgenic rice plants confers resistance to cadmium and senescence and increases grain yield.

    Science.gov (United States)

    Lee, Kyungjin; Back, Kyoungwhan

    2017-04-01

    While ectopic overexpression of serotonin N-acetyltransferase (SNAT) in plants has been accomplished using animal SNAT genes, ectopic overexpression of plant SNAT genes in plants has not been investigated. Because the plant SNAT protein differs from that of animals in its subcellular localization and enzyme kinetics, its ectopic overexpression in plants would be expected to give outcomes distinct from those observed from overexpression of animal SNAT genes in transgenic plants. Consistent with our expectations, we found that transgenic rice plants overexpressing rice (Oryza sativa) SNAT1 (OsSNAT1) did not show enhanced seedling growth like that observed in ovine SNAT-overexpressing transgenic rice plants, although both types of plants exhibited increased melatonin levels. OsSNAT1-overexpressing rice plants did show significant resistance to cadmium and senescence stresses relative to wild-type controls. In contrast to tomato, melatonin synthesis in rice seedlings was not induced by selenium and OsSNAT1 transgenic rice plants did not show tolerance to selenium. T 2 homozygous OsSNAT1 transgenic rice plants exhibited increased grain yield due to increased panicle number per plant under paddy field conditions. These benefits conferred by ectopic overexpression of OsSNAT1 had not been observed in transgenic rice plants overexpressing ovine SNAT, suggesting that plant SNAT functions differently from animal SNAT in plants. © 2017 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  16. Field trial of GABA-fortified rice plants and oral administration of milled rice in spontaneously hypertensive rats.

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    Kowaka, Emi; Shimajiri, Yasuka; Kawakami, Kouhei; Tongu, Miki; Akama, Kazuhito

    2015-06-01

    Hypertension is one of the most critical risk factors accompanying cardiovascular diseases. γ-Aminobutyric acid (GABA) is a non-protein amino acid that functions as a major neurotransmitter in mammals and also as a blood-pressure lowering agent. We previously produced GABA-fortified rice lines of a popular Japonica rice cultivar 'Koshihikari' by genetic manipulation of GABA shunt-related genes. In the study reported here, we grew these same novel rice lines in a field trial and administered the milled rice orally to rats. The yield parameters of the transgenic rice plants were almost unchanged compared to those of untransformed cv. 'Koshihikari' plants, while the rice grains of the transgenic plants contained a high GABA content (3.5 g GABA/kg brown rice; 0.75-0.85 GABA g/kg milled rice) in a greenhouse trial. Oral administration of a diet containing 2.5% GABA-fortified rice, with a daily intake for 8 weeks, had an approximately 20 mmHg anti-hypertensive effect in spontaneous hypertensive rats but not in normotensive Wistar-Kyoto rats. These results suggest that GABA-fortified rice may be applicable as a staple food to control or prevent hypertension.

  17. Methyl jasmonate induced resistance in cheniere rice and soybean plants

    Science.gov (United States)

    Taplin, C.

    2017-12-01

    Methyl jasmonate (MJ) is a compound naturally occurring in certain plants that aids in plant defense. In this study, we examined the difference in herbivory of fall armyworm (FAW) on control plants (treated without MJ) and MJ-treated plants. Seeds of cheniere rice and soybean were soaked in MJ overnight and planted in the greenhouse, although the soybean never grew. Therefore, only the mature plant leaves of cheniere rice were fed to FAW and the difference in herbivory was looked at. Our results show there is no statistical difference in the herbivory of the cheniere rice plant leaves.

  18. Factors Affecting Planting Depth and Standing of Rice Seedling in Parachute Rice Transplanting

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    Astika, I. W.; Subrata, I. D. M.; Pramuhadi, G.

    2018-05-01

    Parachute rice transplanting is a simple and practical rice transplanting method. It can be done manually or mechanically, with various possible designs of machines or tools. This research aimed at quantitatively formulating related factors to the planting depth and standing of rice seedling. Parachute seedlings of rice were grown at several sizes of parachute soil bulb sizes. The trays were specially designed with a 3D printer having bulb sizes 7, 8, 9, 10 mm in square sides and 15 mm depth. At seedling ages of 8-12 days after sowing the seedling bulbs were drops into puddled soil. Soil hardness was set at 3 levels of hardness, measured in hardness index using golf ball test. Angle of dropping was set at 3 levels: 0°, 30°and 45° from the vertical axis. The height of droppings was set at 100 cm, 75 cm, and 50 cm. The relationship between bulb size, height of dropping, soil hardness, dropping angle and planting depth was formulated with ANN. Most of input variables did not significantly affect the planting depth, except that hard soil significantly differs from mild soil and soft soil. The dropping also resulted in various positions of the planted seedlings: vertical standing, sloped, and falling. However, at any position of the planted seedlings, the seedlings would recover themselves into normally vertical position. With this result, the design of planting machinery, as well as the manual planting operation, can be made easier.

  19. Soil micronutrients and its uptake by rice plant. Part of a coordinated programme on isotope-aided micronutrient studies in rice production with special reference to zinc deficiencies

    International Nuclear Information System (INIS)

    Kim, T.S.

    1980-02-01

    A series of field and greenhouse experiments with flooded rice was carried out on contrasting soil types of Korea to study the zinc status of soils, evaluate the chemical methods for extracting zinc from soils in terms of ability to identify zinc deficiency, perform 65 Zn-aided experiments including the residual effects of zinc fertilizers to evaluate the efficiency of zinc sources and methods of zinc application to rice, and associated studies on factors affecting zinc nutrition in rice such as effect of organic matter and chelates. The results show that i) 0.05 N HCl solution for extracting available zinc in soil was effective to separating the soils which require zinc fertilizer application. The proposed zinc value to identify is 2.4 ppm. Among rice soils surveyed, the red-yellow podsolic soil derived from basalt, the reddish-brown lateritic soil of calcareous material and newly reclaimed saline soils were shown to be below this limit; ii) 5 kg Zn/ha as zinc sulphate introduced the highest response in terms of % Zndff, total zinc yield in rice plant, and the fertilizer zinc use efficiency. Applying higher zinc amounts, in case of 20 kg Zn/ha, retarded nitrogen uptake by the plant and as a result the rice grain yield was decreased; iii) Significant yields increases due to the residual effects of zinc fertilizers were obtained on the second and third crops; iv) On the zinc-deficient calcareous soil the use of chelated zinc sources is recommended

  20. Transpiration rates of rice plants treated with Trichoderma spp.

    Science.gov (United States)

    Doni, Febri; Anizan, I.; Che Radziah C. M., Z.; Yusoff, Wan Mohtar Wan

    2014-09-01

    Trichoderma spp. are considered as successful plant growth promoting fungi and have positive role in habitat engineering. In this study, the potential for Trichoderma spp. to regulate transpiration process in rice plant was assessed experimentally under greenhouse condition using a completely randomized design. The study revealed that Trichoderma spp. have potential to enhance growth of rice plant through transpirational processes. The results of the study add to the advancement of the understanding as to the role of Trichoderma spp. in improving rice physiological process.

  1. Discovery of global genomic re-organization based on comparison of two newly sequenced rice mitochondrial genomes with cytoplasmic male sterility-related genes

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    Yamada Mari

    2010-03-01

    Full Text Available Abstract Background Plant mitochondrial genomes are known for their complexity, and there is abundant evidence demonstrating that this organelle is important for plant sexual reproduction. Cytoplasmic male sterility (CMS is a phenomenon caused by incompatibility between the nucleus and mitochondria that has been discovered in various plant species. As the exact sequence of steps leading to CMS has not yet been revealed, efforts should be made to elucidate the factors underlying the mechanism of this important trait for crop breeding. Results Two CMS mitochondrial genomes, LD-CMS, derived from Oryza sativa L. ssp. indica (434,735 bp, and CW-CMS, derived from Oryza rufipogon Griff. (559,045 bp, were newly sequenced in this study. Compared to the previously sequenced Nipponbare (Oryza sativa L. ssp. japonica mitochondrial genome, the presence of 54 out of 56 protein-encoding genes (including pseudo-genes, 22 tRNA genes (including pseudo-tRNAs, and three rRNA genes was conserved. Two other genes were not present in the CW-CMS mitochondrial genome, and one of them was present as part of the newly identified chimeric ORF, CW-orf307. At least 12 genomic recombination events were predicted between the LD-CMS mitochondrial genome and Nipponbare, and 15 between the CW-CMS genome and Nipponbare, and novel genetic structures were formed by these genomic rearrangements in the two CMS lines. At least one of the genomic rearrangements was completely unique to each CMS line and not present in 69 rice cultivars or 9 accessions of O. rufipogon. Conclusion Our results demonstrate novel mitochondrial genomic rearrangements that are unique in CMS cytoplasm, and one of the genes that is unique in the CW mitochondrial genome, CW-orf307, appeared to be the candidate most likely responsible for the CW-CMS event. Genomic rearrangements were dynamic in the CMS lines in comparison with those of rice cultivars, suggesting that 'death' and possible 'birth' processes of the

  2. [Hyperspectral remote sensing diagnosis models of rice plant nitrogen nutritional status].

    Science.gov (United States)

    Tan, Chang-Wei; Zhou, Qing-Bo; Qi, La; Zhuang, Heng-Yang

    2008-06-01

    The correlations of rice plant nitrogen content with raw hyperspectral reflectance, first derivative hyperspectral reflectance, and hyperspectral characteristic parameters were analyzed, and the hyperspectral remote sensing diagnosis models of rice plant nitrogen nutritional status with these remote sensing parameters as independent variables were constructed and validated. The results indicated that the nitrogen content in rice plant organs had a variation trend of stem plant nitrogen nutritional status, with the decisive coefficients (R2) being 0.7996 and 0.8606, respectively; while the model with vegetation index (SDr - SDb) / (SDr + SDb) as independent variable, i. e., y = 365.871 + 639.323 ((SDr - SDb) / (SDr + SDb)), was most fit rice plant nitrogen content, with R2 = 0.8755, RMSE = 0.2372 and relative error = 11.36%, being able to quantitatively diagnose the nitrogen nutritional status of rice.

  3. Haploid rice plants in mutation studies

    Energy Technology Data Exchange (ETDEWEB)

    Tanaka, S [Institute of Radiation Breeding, Ministry of Agriculture and Forestry, Ohmiya, Ibaraki-ken (Japan)

    1970-03-01

    Studies were made on chlorophyll-deficient sectors and diploid-like sectors in haploid rice plants exposed to chronic gamma irradiation, and on germinal mutations in diploid strains derived from the haploid plants. The induction and elimination of somatic mutations in haploid plants and the occurrence of drastic germinal mutations in diploid strains from haploid plants are discussed. (author)

  4. Heavy metal toxicity in rice and soybean plants cultivated in contaminated soil

    Directory of Open Access Journals (Sweden)

    Maria Lígia de Souza Silva

    2014-04-01

    Full Text Available Heavy metals can accumulate in soil and cause phytotoxicity in plants with some specific symptoms. The present study evaluated the specific symptoms on rice and soybeans plants caused by excess of heavy metals in soil. Rice and soybean were grown in pots containing soil with different levels of heavy metals. A completely randomized design was used, with four replications, using two crop species and seven sample soils with different contamination levels. Rice and soybean exhibited different responses to the high concentrations of heavy metals in the soil. Rice plants accumulated higher Cu, Mn, Pb and Zn concentrations and were more sensitive to high concentrations of these elements in the soil, absorbing them more easily compared to the soybean plants. However, high available Zn concentrations in the soil caused phytotoxicity symptoms in rice and soybean, mainly chlorosis and inhibited plant growth. Further, high Zn concentrations in the soil reduced the Fe concentration in the shoots of soybean and rice plants to levels considered deficient.

  5. Uptake and distributions of 90Sr and 137Cs in rice plants

    International Nuclear Information System (INIS)

    Tsukada, Hirofumi; Takeda, Akira; Hasegawa, Hidenao

    2008-01-01

    Polished rice is a staple food in Asian countries and ingestion of polished rice is one of the most important pathways of radionuclides into humans. Inedible parts of rice plants are returned to the soil as fertilizer and are used as an ingredient of feed for livestock. Strontium-90 and 137 Cs are important radionuclides for the assessment of radiation exposure to the public because of their high fission yield, long-half lives and transferability in the environment. The purpose of the present study is to obtain information on the distributions of 90 Sr and 137 Cs in rice plant components for better understanding of the fate of the radionuclides in an agricultural environment. Rice plants were cultivated in an experimental field and collected at harvest time. The concentrations of 90 Sr and 137 Cs in the soil were 5.6 and 4.4 Bq kg -1 , respectively. Rice plant samples were separated into polished rice, rice bran, hull, straw and root parts, and then the concentrations of 90 Sr and 137 Cs in the samples were determined. The concentrations of 90 Sr and 137 Cs in polished rice were 0.012 and 0.0048 Bq kg -1 dry weight, respectively. The concentrations of 90 Sr and 137 Cs varied by two and one orders of magnitudes in rice plant components, respectively. The edible component, polished rice, accounted for 32% of the total dry weight. In the entire rice plants, only 0.5% of the total 90 Sr and 10% of the total 137 Cs were found in polished rice. Contents of 90 Sr and 137 Cs in the above ground parts were 0.84 and 0.021 Bq m -2 , respectively. For each cropping, the percentages of 90 Sr and 137 Cs uptake from the upper soil layer to the aboveground biomass of rice plants were calculated as 0.094 and 0.0030% of their soil inventories, respectively. (author)

  6. Labelling of rice seedlings and rice plants with 32P

    International Nuclear Information System (INIS)

    Achmad Nasroh, K.

    1989-01-01

    Labelling of rice seedlings and rice plants with 32 P. Labelled rice seedlings can be used to tag insect pests that feed on. Radioactivity counting of 32 P in the endosperm and in the shoot of rice seeds that soaked for 72 hours in KH 2 32 PO 4 solution of 1 μCi/ml were 29,300 and 9,500 cpm respectively. When these labelled seedlings were grown in unlabelled medium the radioactivity in the shoot increased. It was due to the 32 P that was translocated to the shoot from the endosperm. The 32 P translocation reached maximum about one week after the seedling were grown in the unlabelled medium. Labelled seedlings could also be produced by growing 5, 10 and 15 days old seedlings hydroponically in Kimura B solution containing 32 P. Ten days after growing, the radioactivity concentration of the seedlings stem reached about 115,000; 85,000 and 170,000 cpm/mg dry weight for the 5, 10 and 15 days old seedlings respectively. For the implementation of this method, 20 ml labelled Kimura B was needed for labelling of one seedling. The seedlings should be prepared in tap water. During the growth the 32 P in the labelled seedlings was distributed throughout the plant, so that new leaves and tillers became also radioactive. (author). 5 refs

  7. Transgenic strategies to confer resistance against viruses in rice plants

    Directory of Open Access Journals (Sweden)

    Takahide eSasaya

    2014-01-01

    Full Text Available Rice (Oryza sativa L. is cultivated in more than 100 countries and supports nearly half of the world’s population. Developing efficient methods to control rice viruses is thus an urgent necessity because viruses cause serious losses in rice yield. Most rice viruses are transmitted by insect vectors, notably planthoppers and leafhoppers. Viruliferous insect vectors can disperse their viruses over relatively long distances, and eradication of the viruses is very difficult once they become widespread. Exploitation of natural genetic sources of resistance is one of the most effective approaches to protect crops from virus infection; however, only a few naturally occurring rice genes confer resistance against rice viruses. In an effort to improve control, many investigators are using genetic engineering of rice plants as a potential strategy to control viral diseases. Using viral genes to confer pathogen-derived resistance against crops is a well-established procedure, and the expression of various viral gene products has proved to be effective in preventing or reducing infection by various plant viruses since the 1990s. RNA-interference (RNAi, also known as RNA silencing, is one of the most efficient methods to confer resistance against plant viruses on their respective crops. In this article, we review the recent progress, mainly conducted by our research group, in transgenic strategies to confer resistance against tenuiviruses and reoviruses in rice plants. Our findings also illustrate that not all RNAi constructs against viral RNAs are equally effective in preventing virus infection and that it is important to identify the viral Achilles’ heel gene to target for RNAi attack when engineering plants.

  8. Translocations of 2,4-D-14C Herbicides In Weed And Rice Plant On Irrigated Rice Field System

    International Nuclear Information System (INIS)

    Chairul, Sofnie M.; Idawati; Mulyadi

    2000-01-01

    The investigation of translocation 2,4-D herbicides using 14 C as tracer on irradiated rice plant system. Condition of the soil was two kinds, that is normal soil and soil 30% up normal. The soil of rice field was spray with 1μCi of 2,4-D non labelled, one week after planting. A part of rice plant and weed was determined the radioactivity after 0, 2, 4, 8, and 10 weeks after spraying. The result showed that radioactivity maximum after zero week was in root and leaf of weeds, the second weeks in root of rice, the forth weeks in rice stick, and eighth weeks in leaf of rice. This result occur at normal condition soil of solid 30 % up normal soil. The residues of 2.4-D in rice was 4,24x10 -3 ppb at normal soil and 3.16x10 -3 ppb at solid 30% up normal soil. This result still lower than rate of WHO/FAO, that is 0,05 ppm

  9. Photochemical oxidants injury in rice plants. III. Effect of ozone on physiological activities in rice plants

    Energy Technology Data Exchange (ETDEWEB)

    Nakamura, H; Saka, H

    1978-01-01

    Experiments were made to determine the effect of photochemical oxidants on physiological activities of rice plants. Rice plants were fumigated with ozone at concentrations of 0.12-0.20 ppm for 2-3 hr to investigate acute injury and at 0.05 and 0.09 ppm for daily exposure from 3.0 leaf stage to assess the effect of ozone on growth. It was observed that malondialdehyde produced by disruption of the components of the membrane increased in the leaves exposed to ozone. Ozone reduced the RuBP-carboxylase activity in both young and old leaves 12-24 hr after fumigation. In the young leaves the activity of this enzyme recovered to some extent after 48 hr, but it did not show any recovery in the old leaves. On the other hand, ozone remarkably increased the peroxidase activity and slightly increased acid phosphatase in all leaves. Abnormally high ethylene evolution and oxygen uptake were detected in leaves soon after ozone fumigation. In general, high molecular protein and chlorophyll contents in the detached leaves decreased with incubation in dark, particularly in the old ones. These phenomena were more accelerated by ozone fumigation. Kinetin and benzimidazole showed significant effects on chlorophyll retention in ozone-exposed leaves. Reduction of plant growth and photosynthetic rate was recognized even in low concentration of ozone in daily exposure at 0.05 and 0.09 ppm. From these results it was postulated that ozone may cause the senescence of leaves in rice plants.

  10. Physiological studies on photochemical oxidant injury in rice plants. II. Effect of abscisic acid (ABA) on ozone injury and ethylene production in rice plants

    Energy Technology Data Exchange (ETDEWEB)

    Jeong, Y.H.; Nakamura, H.; Ota, Y.

    1981-12-01

    In order to determine the effect of ABA on ozone injury to rice plants, ethylene production, rate of chlorophyll retention and ozone-sensitivity of rice plants pretreated with ABA solution were investigated. The experiments were carried out in pots using rice plants at the 7-8 leaf stage. The results obtained are summarized as follows: ethylene production by the leaf blades exposed to ozone increased with the increase in the dosage of ozone; ethylene production was higher in cv. Nihonbare which was more sensitive to ozone than in cv. Tongil; pre-treatment with ABA solution one hour before ozone treatment reduced ethylene production by the leaf blades exposed to ozone; and the rate of chlorophyll retention decreased following injury, but increased remarkably by the pre-treatment with ABA solution. In conclusion, it could be demonstrated that ozone injury of rice plants can be reduced by the pre-treatment with ABA solution. 28 references, 5 figures, 1 table.

  11. Impact of Nitrogen, Phosphorus and Potassium on Brown Planthopper and Tolerance of Its Host Rice Plants

    Directory of Open Access Journals (Sweden)

    Md Mamunur Rashid

    2016-05-01

    Full Text Available The brown planthopper (BPH, Nilaparvata lugens (Stål, appeared as a devastating pest of rice in Asia. Experiments were conducted to study the effects of three nutrients, nitrogen (N, phosphorus (P and potassium (K, on BPH and its host rice plants. Biochemical constituents of BPH and rice plants with varying nutrient levels at different growth stages, and changes in relative water content (RWC of rice plants were determined in the laboratory. Feeding of BPH and the tolerance of rice plants to BPH with different nutrient levels were determined in the nethouse. Concentrations of N and P were found much higher in the BPH body than in its host rice plants, and this elemental mismatch is an inherent constraint on meeting nutritional requirements of BPH. Nitrogen was found as a more limiting element for BPH than other nutrients in rice plants. Application of N fertilizers to the rice plants increased the N concentrations both in rice plants and BPH while application of P and K fertilizers increased their concentrations in plant tissues only but not in BPH. Nitrogen application also increased the level of soluble proteins and decreased silicon content in rice plants, which resulted in increased feeding of BPH with sharp reduction of RWC in rice plants ultimately caused susceptible to the pest. P fertilization increased the concentration of P in rice plant tissues but not changed N, K, Si, free sugar and soluble protein contents, which indicated little importance of P to the feeding of BPH and tolerance of plant against BPH. K fertilization increased K content but reduced N, Si, free sugar and soluble protein contents in the plant tissues which resulted in the minimum reduction of RWC in rice plants after BPH feeding, thereby contributed to higher tolerance of rice plants to brown planthopper.

  12. Ambit determination method in estimating rice plant population density

    Directory of Open Access Journals (Sweden)

    Abu Bakar, B.,

    2017-11-01

    Full Text Available Rice plant population density is a key indicator in determining the crop setting and fertilizer application rate. It is therefore essential that the population density is monitored to ensure that a correct crop management decision is taken. The conventional method of determining plant population is by manually counting the total number of rice plant tillers in a 25 cm x 25 cm square frame. Sampling is done by randomly choosing several different locations within a plot to perform tiller counting. This sampling method is time consuming, labour intensive and costly. An alternative fast estimating method was developed to overcome this issue. The method relies on measuring the outer circumference or ambit of the contained rice plants in a 25 cm x 25 cm square frame to determine the number of tillers within that square frame. Data samples of rice variety MR219 were collected from rice plots in the Muda granary area, Sungai Limau Dalam, Kedah. The data were taken at 50 days and 70 days after seeding (DAS. A total of 100 data samples were collected for each sampling day. A good correlation was obtained for the variety of 50 DAS and 70 DAS. The model was then verified by taking 100 samples with the latching strap for 50 DAS and 70 DAS. As a result, this technique can be used as a fast, economical and practical alternative to manual tiller counting. The technique can potentially be used in the development of an electronic sensing system to estimate paddy plant population density.

  13. IMPACT OF ROW-PLANTING ADOPTION ON PRODUCTIVITY OF RICE FARMING IN NORTHERN GHANA

    Directory of Open Access Journals (Sweden)

    Emmanuel DONKOR

    2016-11-01

    Full Text Available This paper employed the endogenous switching regression and propensity score matching methods to analyse the impact of row-planting technology on rice productivity using 470 rice farms in Northern Ghana. The empirical findings showed that the adoption of row-planting technology exerted greater positive impact on rice yields of smallholder farmers. In addition, rice yields of adopters and non-adopters are driven by farm inputs, socioeconomic, institutional and technological factors. We suggest that achieving self-sufficiency in rice and rural economic transformation in sub-Saharan Africa requires promotion of agricultural technologies including row-planting. Different specific policy interventions are also required to promote rice yields for adopters and non-adopters.

  14. Ecological Fitness of Non-vector Planthopper Sogatella furcifera on Rice Plants Infected with Rice Black Streaked Dwarf Virus

    Directory of Open Access Journals (Sweden)

    Xiao-chan HE

    2012-12-01

    Full Text Available We evaluated the effects of rice black streak dwarf virus (RBSDV-infested rice plants on the ecological parameters and its relevant defensive and detoxification enzymes of white-backed planthopper (WBPH in laboratory for exploring the relationship between RBSDV and the non-vector planthopper. The results showed that nymph survival rate, female adult weight and fecundity, and egg hatchability of WBPH fed on RBSDV-infested rice plants did not markedly differ from those on healthy plants, whereas the female adult longevity and egg duration significantly shortened on diseased plants. Furthermore, significantly higher activities of defensive enzymes (dismutase, catalase and peroxidase and detoxification enzymes (acetylcholinesterase, carboxylesterase and glutathione S-transferase were found in WBPH adults fed on infected plants. Results implied that infestation by RBSDV increased the ecological fitness of non-vector planthopper population.

  15. Uptake and distribution of 137Cs, stable Cs and K in rice plants

    International Nuclear Information System (INIS)

    Tsukada, Hirofumi; Hasegawa, Hidenao

    2003-01-01

    The uptake and distributions of 137 Cs, stable Cs and K were determined for rice plant components, including polished rice, rice bran, hulls, leaves, stems, and roots. The distribution of 137 Cs in polished rice and rice bran was similar to that of stable Cs, while that of K was different. The concentration ratios of Cs/K in leaves increased in older leaf blade positions, which meant that the translocation rate of stable Cs, was slower than that of K. At harvest the dry weight of polished rice accounted for 34% of the entire rice plant, while the distributions of stable Cs in the polished rice and the non-edible parts were 7 and 93%, respectively. These findings suggest that the transfer and distribution of stable Cs in rice plants are different from those of K, and the behavior of stable Cs provides a useful analogue in predicting the fate of 137 Cs in an agricultural environment. (author)

  16. The Genetic Variability of Floral and Agronomic Characteristics of Newly-Bred Cytoplasmic Male Sterile Rice

    Directory of Open Access Journals (Sweden)

    Raafat El-Namaky

    2018-05-01

    Full Text Available Male sterility enabled commercialization of heterosis in rice but low seed set remains a constraint on hybrid dissemination. We evaluated 216 F6 maintainer lines for agronomic and floral characteristics in augmented design and selected 15 maintainer lines, which were testcrossed with IR58025A. Five backcrosses were conducted to transfer cytoplasmic male sterility (CMS to select maintainer lines. Newly-bred BC5:6 CMS lines were evaluated for outcrossing rates and agronomic characteristics. There were highly significant differences among 216 F6 maintainer lines for characteristics whose genotypic variance was higher than environmental variance. The phenotypic coefficient of variation was almost the same as the genotypic coefficient of variation, indicating that most phenotypic variation was due to genetics. There were highly significant differences among CMS lines for number of days to 50% flowering and maturity; stigma exertion; panicle exertion, length and weight; spikelet fertility; tillers per plant; plant height; grains per panicle; grain yield per plant; and 1000-grain weight, but not for pollen and panicle sterility during dry and wet seasons. Three CMS lines (CMS3, CMS12, and CMS14, exhibited high outcrossing rates (56.17%, 51.42% and 48.44%, respectively, which had a highly significant, positive correlation with stigma exertion (0.97, spikelet opening angle (0.82, and panicle exertion (0.95.

  17. A Web-Based Rice Plant Expert System Using Rule-Based Reasoning

    Directory of Open Access Journals (Sweden)

    Anton Setiawan Honggowibowo

    2009-12-01

    Full Text Available Rice plants can be attacked by various kinds of diseases which are possible to be determined from their symptoms. However, it is to recognize that to find out the exact type of disease, an agricultural expert’s opinion is needed, meanwhile the numbers of agricultural experts are limited and there are too many problems to be solved at the same time. This makes a system with a capability as an expert is required. This system must contain the knowledge of the diseases and symptom of rice plants as an agricultural expert has to have. This research designs a web-based expert system using rule-based reasoning. The rule are modified from the method of forward chaining inference and backward chaining in order to to help farmers in the rice plant disease diagnosis. The web-based rice plants disease diagnosis expert system has the advantages to access and use easily. With web-based features inside, it is expected that the farmer can accesse the expert system everywhere to overcome the problem to diagnose rice diseases.

  18. Rhizosphere of rice plants harbor bacteria with multiple plant growth ...

    African Journals Online (AJOL)

    Rhizosphere of rice plants harbor bacteria with multiple plant growth promoting features. ... 45 (39.46%) isolates were capable of producing siderophore, the range of production being 4.50 to 223.26 μg mg-1 protein. Analysis of molecular diversity was made by amplified ribosomal DNA restriction analysis (ARDRA) and ...

  19. Transgenic rice plants harboring an introduced potato proteinase inhibitor II gene are insect resistant.

    Science.gov (United States)

    Duan, X; Li, X; Xue, Q; Abo-el-Saad, M; Xu, D; Wu, R

    1996-04-01

    We introduced the potato proteinase inhibitor II (PINII) gene (pin2) into several Japonica rice varieties, and regenerated a large number of transgenic rice plants. Wound-inducible expression of the pin2 gene driven by its own promoter, together with the first intron of the rice actin 1 gene (act1), resulted in high-level accumulation of the PINII protein in the transgenic plants. The introduced pin2 gene was stably inherited in the second, third, and fourth generations, as shown by molecular analyses. Based on data from the molecular analyses, several homozygous transgenic lines were obtained. Bioassay for insect resistance with the fifth-generation transgenic rice plants showed that transgenic rice plants had increased resistance to a major rice insect pest, pink stem borer (Sesamia inferens). Thus, introduction of an insecticidal proteinase inhibitor gene into cereal plants can be used as a general strategy for control of insect pests.

  20. A rice chloroplast transit peptide sequence does not alter the cytoplasmic localization of sheep serotonin N-acetyltransferase expressed in transgenic rice plants.

    Science.gov (United States)

    Byeon, Yeong; Lee, Hyoung Yool; Lee, Kyungjin; Back, Kyoungwhan

    2014-09-01

    Ectopic overexpression of melatonin biosynthetic genes of animal origin has been used to generate melatonin-rich transgenic plants to examine the functional roles of melatonin in plants. However, the subcellular localization of these proteins expressed in the transgenic plants remains unknown. We studied the localization of sheep (Ovis aries) serotonin N-acetyltransferase (OaSNAT) and a translational fusion of a rice SNAT transit peptide to OaSNAT (TS:OaSNAT) in plants. Laser confocal microscopy analysis revealed that both OaSNAT and TS:OaSNAT proteins were localized to the cytoplasm even with the addition of the transit sequence to OaSNAT. Transgenic rice plants overexpressing the TS:OaSNAT fusion transgene exhibited high SNAT enzyme activity relative to untransformed wild-type plants, but lower activity than transgenic rice plants expressing the wild-type OaSNAT gene. Melatonin levels in both types of transgenic rice plant corresponded well with SNAT enzyme activity levels. The TS:OaSNAT transgenic lines exhibited increased seminal root growth relative to wild-type plants, but less than in the OaSNAT transgenic lines, confirming that melatonin promotes root growth. Seed-specific OaSNAT expression under the control of a rice prolamin promoter did not confer high levels of melatonin production in transgenic rice seeds compared with seeds from transgenic plants expressing OaSNAT under the control of the constitutive maize ubiquitin promoter. © 2014 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  1. Accumulation of total mercury and methylmercury in rice plants collected from different mining areas in China

    International Nuclear Information System (INIS)

    Meng, Mei; Li, Bing; Shao, Jun-juan; Wang, Thanh; He, Bin; Shi, Jian-bo; Ye, Zhi-hong; Jiang, Gui-bin

    2014-01-01

    A total of 155 rice plants were collected from ten mining areas in three provinces of China (Hunan, Guizhou and Guangdong), where most of mercury (Hg) mining takes place in China. During the harvest season, whole rice plants were sampled and divided into root, stalk and leaf, husk and seed (brown rice), together with soil from root zone. Although the degree of Hg contamination varied significantly among different mining areas, rice seed showed the highest ability for methylmercury (MeHg) accumulation. Both concentrations of total mercury (THg) and MeHg in rice plants were significantly correlated with Hg levels in soil, indicating soil is still an important source for both inorganic mercury (IHg) and MeHg in rice plants. The obvious discrepancy between the distribution patterns of THg and MeHg reflected different pathways of IHg and MeHg accumulation. Water soluble Hg may play more important role in MeHg accumulation in rice plants. -- Highlights: • Distribution patterns indicated different pathways of IHg and MeHg accumulation. • Soil is an important source for both THg and MeHg to rice plants. • Water soluble Hg may play more important role in MeHg accumulation in rice plants. -- The distribution patterns indicate different pathways of IHg and MeHg accumulation in rice plants

  2. Plant Pathology: A Life and Death Struggle in Rice Blast Disease.

    Science.gov (United States)

    Zhou, Jian-Min

    2016-09-26

    The fungal pathogen Magnaporthe oryzae causes severe disease symptoms and yield losses on rice plants. A new study shows that this fungus elicits disease lesions by co-opting a host protein and reveals how rice plants fight back. Copyright © 2016 Elsevier Ltd. All rights reserved.

  3. Evaluating the non-rice host plant species of Sesamia inferens (Lepidoptera: Noctuidae) as natural refuges: resistance management of Bt rice.

    Science.gov (United States)

    Liu, Zhuorong; Gao, Yulin; Luo, Ju; Lai, Fengxiang; Li, Yunhe; Fu, Qiang; Peng, Yufa

    2011-06-01

    Although rice (Oryza sativa L.) lines that express Bacillus thuringiensis (Bt) toxins have shown great potential for managing the major Lepidoptera pests of rice in southern China, including Sesamia inferens, their long-term use is dependent on managing resistance development to Bt toxins in pest populations. The maintenance of "natural" refuges, non-Bt expressing plants that are hosts for a target pest, has been proposed as a means to minimize the evolution of resistance to Bt toxins in transgenic plants. In the current study, field surveys and greenhouse experiments were conducted to identify host plants of S. inferens that could serve as "natural" refuges in rice growing areas of southern China. A field survey showed that 34 plant species in four families can be alternative host plants of S. inferens. Based on injury level under field conditions, rice (Oryza sativa L.); water oat (Zizania latifolia Griseb.); corn (Zea mays L.); tidalmarsh flatsedge (Cyperus serotinus Rottb.); and narrow-leaved cat-tail (Typha angustifolia Linn.) were identified as the primary host plant species of S. inferens. Greenhouse experiments further demonstrated that water oat, corn, and narrow-leaved cat-tail could support the survival and development of S. inferens. Interestingly, greenhouse experiments showed that S. inferens preferred to lay eggs on tidalmarsh flatsedge compared with the other three nonrice host species, although no pupae were found in the plants examined in field surveys. Few larvae were found to survive on tidalmarsh flatsedge in greenhouse bioassays, suggesting that tidalmarsh flatsedge could serve as a "dead-end" trap crop for S. inferens, but is not a candidate to serve as natural refuge to maintain susceptible S. inferens. Overall, these results suggest that water-oat, corn, and narrow-leaved cat-tail might serve as "natural refuge" for S. inferens in rice planting area of southern China when Bt rice varieties are planted.

  4. Mapping paddy rice planting area in rice-wetland coexistent areas through analysis of Landsat 8 OLI and MODIS images.

    Science.gov (United States)

    Zhou, Yuting; Xiao, Xiangming; Qin, Yuanwei; Dong, Jinwei; Zhang, Geli; Kou, Weili; Jin, Cui; Wang, Jie; Li, Xiangping

    2016-04-01

    Accurate and up-to-date information on the spatial distribution of paddy rice fields is necessary for the studies of trace gas emissions, water source management, and food security. The phenology-based paddy rice mapping algorithm, which identifies the unique flooding stage of paddy rice, has been widely used. However, identification and mapping of paddy rice in rice-wetland coexistent areas is still a challenging task. In this study, we found that the flooding/transplanting periods of paddy rice and natural wetlands were different. The natural wetlands flood earlier and have a shorter duration than paddy rice in the Panjin Plain, a temperate region in China. We used this asynchronous flooding stage to extract the paddy rice planting area from the rice-wetland coexistent area. MODIS Land Surface Temperature (LST) data was used to derive the temperature-defined plant growing season. Landsat 8 OLI imagery was used to detect the flooding signal and then paddy rice was extracted using the difference in flooding stages between paddy rice and natural wetlands. The resultant paddy rice map was evaluated with in-situ ground-truth data and Google Earth images. The estimated overall accuracy and Kappa coefficient were 95% and 0.90, respectively. The spatial pattern of OLI-derived paddy rice map agrees well with the paddy rice layer from the National Land Cover Dataset from 2010 (NLCD-2010). The differences between Rice Landsat and Rice NLCD are in the range of ±20% for most 1-km grid cell. The results of this study demonstrate the potential of the phenology-based paddy rice mapping algorithm, via integrating MODIS and Landsat 8 OLI images, to map paddy rice fields in complex landscapes of paddy rice and natural wetland in the temperate region.

  5. Methodology development for area determination of rice planted paddy using RADARSAT data

    International Nuclear Information System (INIS)

    Ishitsuka, N.; Saito, G.; Murakami, T.; Ogawa, S.; Okamoto, K.

    2003-01-01

    Every year, the agricultural statistics section of the Japanese government announces rice planting paddy area and rice yield per hectare (ha). At present, the rice planting paddy area is calculated based on field survey by human power. In future, the Japanese government should like to determine the rice transplanted paddy area using remote sensing. Already, some results have come out using satellite-borne optical sensors. However, Japan has a rainy-season at crop growing time, and therefore it is difficult, under such weather condition, to make accurate and consistent observation of paddy fields every year by optical means. On the other hand, Synthetic Aperture Radar (SAR) is capable of observing the earth's surface without influence of clouds. Making use of this all-weather imaging capability, we are currently developing a method to determine the rice planted paddy area using SAR data acquired by RADARSAT. Paddy fields are filled with water during rice-planting period. When the microwave is incident on the filled paddy fields, it is reflected away from the SAR antenna by the water surface acting like a mirror. This phenomenon is called 'specular reflection'. The microwave backscatter is therefore small from the surface covered with water. Thus, the radar cross section (RCS) is very small from rice paddies at a transplanting period due to the specular reflection, and it increases with the growth of rice plants because of volume scatter by stems and leaves, and also by multiple reflection between the water surface and rice plants. In our study, this characteristic is used to develop methods of estimating rice paddy area. Our study area is the Saga plain in the southeast Japan. First, We determine the threshold of image intensity to separate the land and water areas using the histogram and maps. Next, we develop techniques of classification, utilizing (1) RADARSAT and optical data, (2) two multi-temporal RADARSAT data, (3) RADARSAT and GIS data, and (4

  6. Fenton process-affected transformation of roxarsone in paddy rice soils: Effects on plant growth and arsenic accumulation in rice grain.

    Science.gov (United States)

    Qin, Junhao; Li, Huashou; Lin, Chuxia

    2016-08-01

    Batch and greenhouse experiments were conducted to examine the effects of Fenton process on transformation of roxarsone in soils and its resulting impacts on the growth of and As uptake by a rice plant cultivar. The results show that addition of Fenton reagent markedly accelerated the degradation of roxarsone and produced arsenite, which was otherwise absent in the soil without added Fenton reagent. Methylation of arsenate was also enhanced by Fenton process in the earlier part of the experiment due to abundant supply of arsenate from Roxarsone degradation. Overall, addition of Fenton reagent resulted in the predominant presence of arsenate in the soils. Fenton process significantly improved the growth of rice in the maturity stage of the first crop, The concentration of methylated As species in the rice plant tissues among the different growth stages was highly variable. Addition of Fenton reagent into the soils led to reduced uptake of soil-borne As by the rice plants and this had a significant effect on reducing the accumulation of As in rice grains. The findings have implications for understanding As biogeochemistry in paddy rice field receiving rainwater-borne H2O2 and for development of mitigation strategies to reduce accumulation of As in rice grains. Copyright © 2016 Elsevier Inc. All rights reserved.

  7. 15N dilution technique of assessing the contribution of nitrogen fixation to rice plant

    International Nuclear Information System (INIS)

    Ventura, Wilbur; Watanabe, Iwao

    1983-01-01

    An attempt to correlate the positive nitrogen balance in rice-soil system with the 15 N dilution in rice plants was made to see if isotope dilution can be used to assess the contribution of nitrogen fixation to the nitrogen nutrition of rice. 15 N ammonium sulfate and sucrose were added to the moist soil in pots to label biomass nitrogen fraction. The rice-soil system with higher nitrogen gain had lower 15 N content in the rice plants. When the surface of pots was covered with black cloths to suppress photodependent N 2 fixation, no significant nitrogen gain was observed. Significant gain was found in the rice-flooded soil system exposed to light, and the 15 N content of plants decreased in allowing the photodependent N 2 fixation by blue-green algae symbiosis. The contribution of plant nitrogen derived from photodependent N 2 fixation was estimated to be 20-30 % of the positive nitrogen gain in the system by the 15 N dilution technique using the rice-covered soil as reference system. (Mori, K.)

  8. Deciphering the factors associated with the colonization of rice plants by cyanobacteria.

    Science.gov (United States)

    Bidyarani, Ngangom; Prasanna, Radha; Chawla, Gautam; Babu, Santosh; Singh, Rajendra

    2015-04-01

    Cyanobacteria-rice plant interactions were analyzed using a hydroponics experiment. The activity of plant defense and pathogenesis-related enzymes, scanning electron microscopy, growth, nitrogen fixation (measured as ARA), and DNA fingerprinting assays proved useful in illustrating the nature of associations of cyanobacteria with rice plants. Microscopic analyses revealed the presence of short filaments and coiled masses of filaments of cyanobacteria near the epidermis and cortex of roots and shoot tissues. Among the six cyanobacterial strains employed, Calothrix sp. (RPC1), Anabaena laxa (RPAN8), and Anabaena azollae (C16) were the best performing strains, in terms of colonization in roots and stem. These strains also enhanced nitrogen fixation and stimulated the activity of plant defense/cell wall-degrading enzymes. A significantly high correlation was also recorded between the elicited plant enzymes, growth, and ARA. DNA fingerprinting using highly iterated palindromic sequences (HIP-TG) further helped in proving the establishment of inoculated organisms in the roots/shoots of rice plants. This study illustrated that the colonization of cyanobacteria in the plant tissues is facilitated by increased elicitation of plant enzymes, leading to improved plant growth, nutrient mobilization, and enhanced plant fitness. Such strains can be promising candidates for developing "cyanobacteria colonized-nitrogen-fixing rice plants" in the future. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  9. Antioxidant activity of rice plants sprayed with herbicides

    Directory of Open Access Journals (Sweden)

    Marcos André Nohatto

    2016-03-01

    Full Text Available Understanding the physiological defense behavior of plants subjected to herbicide application may help to identify products with higher or lower capacity to cause oxidative stress in crops. This study aimed at evaluating the effect of herbicides in the antioxidant activity of rice plants. The experimental design was completely randomized, with six replications. Treatments consisted of the herbicides bentazon (photosystem II inhibitor; 960 g ha-1, penoxsulam (acetolactate synthase inhibitor; 60 g ha-1, cyhalofop-butyl (acetyl coenzyme-A carboxylase inhibitor; 315 g ha-1 and a control. After the herbicides application, samples of rice shoots were collected at 12, 24, 48 and 96 hours after application (HAA. The components evaluated were hydrogen peroxide (H2O2, lipid peroxidation and activity of the antioxidant enzymes superoxide dismutase (SOD and catalase (CAT. Bentazon (up to 24 HAA and penoxsulam (48 and 96 HAA reduced the CAT activity. Moreover, these herbicides increased the levels of H2O2, lipid peroxidation and SOD activity, indicating a condition of oxidative stress in rice plants. The cyhalofop-butyl herbicide did not alter the antioxidant activity, showing that it causes less stress to the crop.

  10. Rice straw addition as sawdust substitution in oyster mushroom (Pleurotus ostreatus) planted media

    Science.gov (United States)

    Utami, Christine Pamardining; Susilawati, Puspita Ratna

    2017-08-01

    Oyster mushroom is favorite by the people because of the high nutrients. The oyster mushroom cultivation usually using sawdust. The availability of sawdust become difficult to find. It makes difficulties of mushroom cultivation. Rice straw as an agricultural waste can be used as planted media of oyster mushroom because they contain much nutrition needed to the mushroom growth. The aims of this research were to analysis the influence of rice straw addition in a baglog as planted media and to analysis the concentration of rice straw addition which can substitute sawdust in planted media of oyster mushroom. This research used 4 treatment of sawdust and rice straw ratio K = 75 % : 0 %, P1 = 60 % : 15 %, P2 = 40 % : 35 %, P3 = 15 % : 60 %. The same material composition of all baglog was bran 20%, chalk 5%, and water 70%. The parameters used in this research were wet weight, dry weight, moisture content and number of the mushroom fruit body. Data analysis was used ANOVA test with 1 factorial. The results of this research based on statistical analysis showed that there was no influence of rice straw addition in a planted media on the oyster mushroomgrowth. 15% : 60% was the concentrationof rice straw additionwhich can substitute the sawdust in planted media of oyster mushroom.

  11. Characteristics of nitrogen fixation of mixed diazotrophs associated with rice plant

    International Nuclear Information System (INIS)

    Ling Fan; Wang Zhengfang; Wang Yaodong; Song Wei

    1997-01-01

    Characteristics of N 2 fixation of diazotrophs associated with rice plant in paddy soils in Nanjing was studied by 15 N tracing technique. The results showed that amount of N fixed by rice plant was 1.03 kg/666.7 m 2 and the rate of fixed N was 6.7%. The maximum N fixed was occurred during jointing-complete heading stage. The daily average amount of N fixed reached to 24.31 mg/m 2 ·day. The fixed N of jointing-complete heading stage was 40.9% of that whole rice growth stage. The amount of fixed N during jointing-maturing stage was over 70% of whole rice growth stage. The economic benefits for fertilizer saving was 13.3 kg/666.7 m 2 of ammonium sulphate. The yield of rice grain was increased by 4.14% after inoculation with the mixed diazotrophs

  12. Tocopherol-deficient rice plants display increased sensitivity to photooxidative stress.

    Science.gov (United States)

    Chen, Defu; Chen, Haiwei; Zhang, Luhua; Shi, Xiaoli; Chen, Xiwen

    2014-06-01

    Tocopherols are lipophilic antioxidants that are synthesized exclusively in photosynthetic organisms. Despite extensive in vivo characterization of tocopherol functions in plants, their functions in the monocot model plant, rice, remain to be determined. In this study, transgenic rice plants constitutively silenced for homogentisate phytyltransferase (HPT) and tocopherol cyclase (TC) activity were generated. Silencing of HPT and TC resulted in up to a 98 % reduction in foliar tocopherol content relative to the control plants, which was also confirmed by transcript level analysis. When grown under normal conditions, HPT and TC transgenics showed no distinctive phenotype relative to the control plants, except a slight reduction in plant height and a slight decrease in the first leaf length. However, when exposed to high light at low temperatures, HPT and TC transgenics had a significantly higher leaf yellowing index than the control plants. The tocopherol-deficient plants decreased their total individual chlorophyll levels, their chlorophyll a/b ratio, and the maximum photochemical efficiency of photosystem II, whereas increased lipid peroxidation levels relative to the control plants. Tocopherol deficiency had no effect on ascorbate biosynthesis, but induced glutathione, antheraxanthin, and particularly zeaxanthin biosynthesis for compensation under stressful conditions. However, despite these compensation mechanisms, HPT and TC transgenics still exhibited altered phenotypes under high light at low temperatures. Therefore, it is suggested that tocopherols cannot be replaced and play an indispensable role in photoprotection in rice.

  13. Phloem-exudate proteome analysis of response to insect brown plant-hopper in rice.

    Science.gov (United States)

    Du, Ba; Wei, Zhe; Wang, Zhanqi; Wang, Xiaoxiao; Peng, Xinxin; Du, Bo; Chen, Rongzhi; Zhu, Lili; He, Guangcun

    2015-07-01

    Brown plant-hopper (Nilaparvata lugens Stål, BPH), one of the most devastating agricultural insect pests of rice throughout Asia, ingests nutrients from rice sieve tubes and causes a dramatic yield loss. Planting resistant variety is an efficient and economical way to control this pest. Understanding the mechanisms of host resistance is extremely valuable for molecular design of resistant rice variety. Here, we used an iTRAQ-based quantitative proteomics approach to perform analysis of protein expression profiles in the phloem exudates of BPH-resistant and susceptible rice plants following BPH infestation. A total of 238 proteins were identified, most of which were previously described to be present in the phloem of rice and other plants. The expression of genes for selected proteins was confirmed using a laser capture micro-dissection method and RT-PCR. The mRNAs for three proteins, RGAP, TCTP, and TRXH, were further analyzed by using in situ mRNA hybridization and localized in the phloem cells. Our results showed that BPH feeding induced significant changes in the abundance of proteins in phloem sap of rice involved in multiple pathways, including defense signal transduction, redox regulation, and carbohydrate and protein metabolism, as well as cell structural proteins. The results presented provide new insights into rice resistance mechanisms and should facilitate the breeding of novel elite BPH-resistant rice varieties. Copyright © 2015 Elsevier GmbH. All rights reserved.

  14. Pre-feasibility study for an electric power plant based on rice straw. [Mali

    Energy Technology Data Exchange (ETDEWEB)

    Fock, F. [Ea Energy Analysis, Copenhagen (Denmark); Nygaard, I. [Technical Univ. of Denmark. DTU Management Engineering, UNEP Risoe Centre on Energy, Climate and Sustainable Development, Roskilde (Denmark); Maiga, A.; Kone, B.; Kamissoko, F.; Coulibaly, N.; Ouattara, O.

    2012-11-15

    The main objective is to make a first evaluation regarding if it's technically possible, economically viable, sustainable and recommendable to build a rice straw/hulls fired power plant in Niono in Mali. Based on the available resource of rice straw and the possibilities for connecting to the grid it has been chosen to analyse a 5 MW power plant in the project. For technical reasons the rice straw should be the main fuel, but rice hulls can be used for co-firing. Up to around 20% of the fuel in the plant can be rice hulls instead of rice straw. A number of different biomass power production technologies have been evaluated in the project. This includes: 1) Grate fired boiler. 2) Bubbling fluidised bed. 3) Circulating fluidised bed. 4) Dust fired boiler. 5) Gasification. 6) Stirling engine. 7) Organic Rankine Cycle. Grate firing is the most relevant technology in this case, due to the fuel, the size of the power plant, the demand for electricity only and not heat, the demand for a robust and well proven technology. For a grate fired plant a calculation of the thermodynamic process of the power plant has been carried out in order to determine the electrical efficiency of the plant. The case consists of a 5 MW grate fired power plant with steam turbines and air cooled condenser resulting in an efficiency of 24.6% at full load (20% as yearly average). Investment costs and costs for O and M have been assumed based on experience from Danish power plants but adjusted for local conditions in Mali. The costs for collecting and transporting the rice straw and for the ash disposal have been specifically estimated in this project. The average cost of capital has been estimated based on assumptions on equity, international loans and local loans/bank finance. Based on the investment, the cost of O and M, fuel, ash disposal and the financial assumptions, a cash flow analysis is made in order to calculate the power price resulting in a Net Present Value (NPV) of the

  15. Information system of rice planting calendar based on ten-day (Dasarian) rainfall prediction

    International Nuclear Information System (INIS)

    Susandi, Armi; Tamamadin, Mamad; Djamal, Erizal; Las, Irsal

    2015-01-01

    This paper describes information system of rice planting calendar to help farmers in determining the time for rice planting. The information includes rainfall prediction in ten days (dasarian) scale overlaid to map of rice field to produce map of rice planting in village level. The rainfall prediction was produced by stochastic modeling using Fast Fourier Transform (FFT) and Non-Linier Least Squares methods to fit the curve of function to the rainfall data. In this research, the Fourier series has been modified become non-linear function to follow the recent characteristics of rainfall that is non stationary. The results have been also validated in 4 steps, including R-Square, RMSE, R-Skill, and comparison with field data. The development of information system (cyber extension) provides information such as rainfall prediction, prediction of the planting time, and interactive space for farmers to respond to the information submitted. Interfaces for interactive response will be critical to the improvement of prediction accuracy of information, both rainfall and planting time. The method used to get this information system includes mapping on rice planting prediction, converting the format file, developing database system, developing website, and posting website. Because of this map was overlaid with the Google map, the map files must be converted to the .kml file format

  16. Information system of rice planting calendar based on ten-day (Dasarian) rainfall prediction

    Energy Technology Data Exchange (ETDEWEB)

    Susandi, Armi, E-mail: armi@meteo.itb.ac.id [Department of Meteorology, Institut Teknologi Bandung, Labtek XI Building floor 1, Jalan Ganesa 10 Bandung 40132 (Indonesia); Tamamadin, Mamad, E-mail: mamadtama@meteo.itb.ac.id [Laboratory of Applied Meteorology, Institut Teknologi Bandung Ged. Labtek XI lt. 1, Jalan Ganesa 10 Bandung 40132 (Indonesia); Djamal, Erizal, E-mail: erizal-jamal@yahoo.com [Center for Agricultural Technology Transfer Management, Ministry of Agriculture Jl. Salak No. 22 Bogor (Indonesia); Las, Irsal, E-mail: irsallas@yahoo.com [Indonesian Agroclimate and Hydrology Research Institute, Ministry of Agriculture Jl. Tentara Pelajar 1a Bogor 16111 (Indonesia)

    2015-09-30

    This paper describes information system of rice planting calendar to help farmers in determining the time for rice planting. The information includes rainfall prediction in ten days (dasarian) scale overlaid to map of rice field to produce map of rice planting in village level. The rainfall prediction was produced by stochastic modeling using Fast Fourier Transform (FFT) and Non-Linier Least Squares methods to fit the curve of function to the rainfall data. In this research, the Fourier series has been modified become non-linear function to follow the recent characteristics of rainfall that is non stationary. The results have been also validated in 4 steps, including R-Square, RMSE, R-Skill, and comparison with field data. The development of information system (cyber extension) provides information such as rainfall prediction, prediction of the planting time, and interactive space for farmers to respond to the information submitted. Interfaces for interactive response will be critical to the improvement of prediction accuracy of information, both rainfall and planting time. The method used to get this information system includes mapping on rice planting prediction, converting the format file, developing database system, developing website, and posting website. Because of this map was overlaid with the Google map, the map files must be converted to the .kml file format.

  17. Impact Of Different Time Planting In Soybeans And Neem Seed Extract Application To Insect Population On Rice Field

    Directory of Open Access Journals (Sweden)

    Tamrin Abdullah

    2015-08-01

    Full Text Available Abstract The purpose of research is to study impact of different time planting of soybean and neem seed extract application to pest insect population on rice field. The research was used Random Block Design in three treatment of insecticides application i.e neem seed extract together with rice planting neem seed extract on soybean 17 days after rice planting synthetic insecticides on 17 days after rice planting Delthametrin on soybean and Chlorpirifos on rice respectively. Research was conducted in rice fields with irrigation channels. The land area is 0.8 hectares with extensive experiments each rice terraces approximately 900 m2 with separate by rice terraces for every treatment. Each treatment consisted of three groups and using nine rice terraces. Samples of the rice plant population is 25 plants per sample unit. The results was showed treatment by neem seed extract with different time planting of soybeans able to reduce number of pest insects populations such as N. virescens 80.38 N. lugens 67.17 S. incertulas 66.5 and L. oratorius 93.46 when compared to treatment with synthetic insecticides Delthamethrin and Chlorpyrifos.

  18. /sup 15/N dilution technique of assessing the contribution of nitrogen fixation to rice plant

    Energy Technology Data Exchange (ETDEWEB)

    Ventura, W; Watanabe, Iwao [International Rice Research Inst., College, Laguna (Phillippines)

    1983-06-01

    An attempt to correlate the positive nitrogen balance in rice-soil system with the /sup 15/N dilution in rice plants was made to see if isotope dilution can be used to assess the contribution of nitrogen fixation to the nitrogen nutrition of rice. /sup 15/N ammonium sulfate and sucrose were added to the moist soil in pots to label biomass nitrogen fraction. The rice-soil system with higher nitrogen gain had lower /sup 15/N content in the rice plants. When the surface of pots was covered with black cloths to suppress photodependent N/sub 2/ fixation, no significant nitrogen gain was observed. Significant gain was found in the rice-flooded soil system exposed to light, and the /sup 15/N content of plants decreased in allowing the photodependent N/sub 2/ fixation by blue-green algae symbiosis. The contribution of plant nitrogen derived from photodependent N/sub 2/ fixation was estimated to be 20-30 % of the positive nitrogen gain in the system by the /sup 15/N dilution technique using the rice-covered soil as reference system.

  19. Drought resistant rice mutants, characteristics and discussions on possibilities for planting them in some Arab Countries which import rice

    International Nuclear Information System (INIS)

    Abo-Hegazi, A.M.T.

    1994-01-01

    A number of drought resistant mutants of rice were produced from ordinary rice varieties being planted in several parts of Egypt through utilization of gamma rays as a mutagen. The mutants have water requirements less than one half of that of their mother varieties. According to official data, authorities in Egypt insure about 18000 M 3 of irrigation water for every hectare (10000 M 2 ) of rice and about 6700 M 3 , 6900 M 3 for every hectare of corn and ground nuts, respectively. Peanuts and corn are summer crops like the drought resistant rice mutants. The mentioned mutants can produce good yield under water requirements very near to that of corn and peanuts. The wide gap in agricultural food stuffs for the Arab Countries (more than 20000 million US $ annually) includes rice imports usually exceeds 700 million US $ per year> Rice imports of Arab Countries such as Saudi Arabia, Yemen, Syria, Libya and the Sudan, reached 180, 47, 21, 16 and 14 million US $ in 1988 as an example. Such countries could make use of the drought resistant rice mutants for plantation on water requirements very near to those of usual summer crops such as corn and peanuts which is significantly less than one half of water requirements of their mother varieties. Some characteristics of such mutants as well as discussions on possibilities for planting them in some of the nominated Arab Countries are presented. However, arrangements for ensuring the minimum water requirements during the growing period irrespective to rain which in many cases did not accord the growing period of the mutants should be taken if such countries wants to make use of the drought resistant rice mutants. The author believe that most if not all requirements of rice of such countries could locally be ensured through planting of the above mentioned rice mutants. In this case, maximizing the efficiency of utilizing the limited water resources of such countries could also be counted as another cause for presenting this

  20. A preliminary study on the uptake of radioiodine by rice plants from soil

    International Nuclear Information System (INIS)

    Uchida, Shigeo; Muramatsu, Yasuyuki; Sumiya, Misako; Ohmomo, Yoichiro; Yamaguchi, Shuho.

    1989-01-01

    In an atmospheric discharge of radioiodines, direct deposition of the nuclides onto leaf surface must be the most significant pathway from the environment to man. However, 129 I reaches man through several pathways because of its long half life of 1.6 x 10 7 years. Root uptake of 129 I is one of the most important pathways of this nuclide. In Japan, rice is thought to be the most critical crop on the pathway. In this paper, uptake of radioiodine from irrigation water by rice plant was investigated. Rice plants, Oryza sativa cv. Nihonbare, were grown under flooded condition in Wagner pots containing soil collected in Tokai-mura. Iodine-131 was added as a tracer into the surface water in the pots at three different growing stages, heading, dough-ripe and yellow-ripe stages, respectively, and the plants were cultivated until the harvest time in a plant growth chamber. At the harvest time, concentration of 131 I in each organ of rice plant was measured with a NaI scintillation counter. The profile of 131 I in the soil was also investigated. The results obtained are as follows; (1) Activities of 131 I in leaf blade and sheath of lower part were generally higher than those of upper part. Compared to the 131 I activity of the flag leaf, the ratios of the activity in rachis-branch, hull and brown rice were 1.0-0.5, 0.1 and 1-5 x 10 -3 , respectively. These may suggest that iodine taken up by the roots scarcely re-translocated into rice. (2) Ratio of 131 I in brown rice and hull was about 1 : 4. (3) Activity ratio ('concentration of 131 I in brown rice'/'average concentration of that in the soil' during 6 days uptake experiment.) was 4-5 x 10 -4 . (author)

  1. Impact Of Different Time Planting In Soybeans And Neem Seed Extract Application To Insect Population On Rice Field

    OpenAIRE

    Tamrin Abdullah; Ahdin Gassa; Sri Nur Aminah Ngatimin; Nurariaty Agus And Abdul Fattah

    2015-01-01

    Abstract The purpose of research is to study impact of different time planting of soybean and neem seed extract application to pest insect population on rice field. The research was used Random Block Design in three treatment of insecticides application i.e neem seed extract together with rice planting neem seed extract on soybean 17 days after rice planting synthetic insecticides on 17 days after rice planting Delthametrin on soybean and Chlorpirifos on rice respectively. Research was conduc...

  2. Impact Of Different Time Planting In Soybeans And Neem Seed Extract Application To Insect Population On Rice Field

    OpenAIRE

    Abdullah, Tamrin; Gassa, Ahdin; Ngatimin, Sri Nur Aminah; Agus, Nurariaty; Fattah, Abdul

    2015-01-01

    The purpose of research is to study impact of different time planting of soybean and neem seed extract application to pest insect population on rice field. The research was used Random Block Design in three treatment of insecticides application i.e: neem seed extract together with rice planting, neem seed extract on soybean 17 days after rice planting, synthetic insecticides on 17 days after rice planting (Delthametrin on soybean and Chlorpirifos on rice), respectively. Research was conducted...

  3. Radiation use efficiency of rice under different planting methods and environmental conditions

    International Nuclear Information System (INIS)

    Apakupakul, R.

    1995-01-01

    Radiation use efficiency is an important parameter which has often been used in many crop growth models to estimate total biomass and yield. Studies of the relationships between above-ground biomass and accumulative absorbed photosynthetically active radiation (PARa, MJ/square m) of rice were examined both on-farms and on-station in Phatthalung. Planting methods were wet-sown and transplanted rice for Suphanburi 90 in the 1993 dry season and Chieng in the 1993-94 wet season. Solar radiation of the two growing seasons were calculated from climatic data. The objectives of this experiment were (1) to know the pattern of relationship between above-ground biomass and accumulative absorbed PAR of rice cultivars grown in South Thailand, (2) to compare the radiation use efficiency of rice cultivars under different planting methods and (3) to obtain the primary data for rice growth modelling in the southern climate. Results presented that only the duration of first growing period up to stem elongation in both cultivars, above-ground biomass and leaf area index were higher in wet-sown than in transplanted rice. Relationship between above-ground biomass accumulation through growing period and accumulative absorbed PAR was in positive linear regression with R*[2)0.85. Erect leaf of Suphanburi 90 had a radiation use efficiency (RUE, g/MJ) higher than non-erect leaf of Chieng. A problem of weed infestation in wet-sown rice in both cultivars had an effect on the RUE which were highly significant lower than transplanted rice. The Rue of wet-sown and transplanted rice were 2.77 and 3.20 g/MJ, respectively for Suphanburi 90, 2.13 and 2.67 g/MJ for Chieng. These results suggest that when dealing with radiation use efficiency in the rice growth modelling the differences of cultivars and planting methods should be taken into consideration

  4. Effects of Chemical Applications to Metal Polluted Soils on Cadmium Uptake by Rice Plant

    Directory of Open Access Journals (Sweden)

    Yoo J. H.

    2013-04-01

    Full Text Available Pot experiment using metal polluted soils was conducted to investigate the effects of lime, iron and sulfur on changes in Cd availability and uptake by rice plant. Drainage and irrigation of water were performed to develop redox changes like field cultivation. Iron chloride and sodium sulfate solutions were applied to the pots in the middle of growth period of rice plant. Reactive metal pool in heavily polluted soils was slightly decreased after treatments with lime, iron chloride, sodium sulfate and combination of these chemicals. However, cadmium uptake by rice plant was significantly different across the treatments and the extent of Cd pollution. For highly polluted soils, more Cd reduction was observed in iron chloride treatments. Cd content in polished rice for iron chloride and (iron chloride+organic matter treatments was only 16-23% and 25-37% compared to control and liming, respectively. Treatment of (iron chloride+sulfate rather increased Cd content in rice. For moderately polluted soils, Cd reduction rate was the order of (OM+iron chloride > iron chloride > lime. Other treatments including sulfate rather increased Cd content in rice maximum 3 times than control. It was proposed to determine the optimum application rate of iron for minimizing hazardous effect on rice plant.

  5. Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice

    OpenAIRE

    Yang, Wanneng; Guo, Zilong; Huang, Chenglong; Duan, Lingfeng; Chen, Guoxing; Jiang, Ni; Fang, Wei; Feng, Hui; Xie, Weibo; Lian, Xingming; Wang, Gongwei; Luo, Qingming; Zhang, Qifa; Liu, Qian; Xiong, Lizhong

    2014-01-01

    Even as the study of plant genomics rapidly develops through the use of high-throughput sequencing techniques, traditional plant phenotyping lags far behind. Here we develop a high-throughput rice phenotyping facility (HRPF) to monitor 13 traditional agronomic traits and 2 newly defined traits during the rice growth period. Using genome-wide association studies (GWAS) of the 15 traits, we identify 141 associated loci, 25 of which contain known genes such as the Green Revolution semi-dwarf gen...

  6. Gravimorphism in rice and barley: promotion of leaf elongation by vertical inversion in agravitropically growing plants.

    Science.gov (United States)

    Abe, K; Takahashi, H; Suge, H

    1998-12-01

    We have compared shoot responses of agravitropic rice and barley plants to vertical inversion with those of normal ones. When rice plants were vertically inverted, the main stems of a japonica type of rice, cv. Kamenoo, showed negative gravitropism at nodes 2-15 of both elongated and non-elongated internodes. However, shoots of lazy line of rice, lazy-Kamenoo, bent gravitropically at nodes 11-15 only elongated internodes but not at nodes 2-10 of non-elongated ones. Thus, shoots of Kamenoo responded gravitropically at all stages of growth, whereas shoots of lazy-Kamenoo did not show gravitropic response before heading. In Kamenoo plants, lengths of both leaf-sheath and leaf-blade were shortened by vertical inversion, but those of the vertically inverted plants of lazy-Kamenoo were significantly longer than the plants in an upright position. When agravitropic and normal plants of barley were vertically inverted, the same results as in rice were obtained; elongation of both leaf-sheath and leaf-blade was inhibited in normal barley plants, Chikurin-Ibaragi No. 1, but significantly stimulated in agravitropic plants of serpentina barley. These results suggest that vertical inversion of rice and barley plants enhances the elongation growth of leaves in the absence of tropistic response.

  7. Three Newly Naturalized Plants in Taiwan

    Directory of Open Access Journals (Sweden)

    Ming-Jer Jung

    2009-11-01

    Full Text Available Three newly naturalized plants are reported in this paper. Hypochaeris microcephala (Sch. Bip. Cabrera var. albiflora (Kuntze Cabrera (Asteraceae is naturalized in urban areas of northern Taiwan. Indigofera pseudo-tinctoria Matsum. (Leguminosae is naturalized in low elevations of northern and southern Taiwan and in middle elevations of central Taiwan. Lamium purpureum L. (Laminaceae has become naturalized locally in middle elevations of central Taiwan. Descriptions, illustrations and color photos of these plants are provided.

  8. Modeling the leaf angle dynamics in rice plant.

    Directory of Open Access Journals (Sweden)

    Yonghui Zhang

    Full Text Available The leaf angle between stem and sheath (SSA is an important rice morphological trait. The objective of this study was to develop and validate a dynamic SSA model under different nitrogen (N rates for selected rice cultivars. The time-course data of SSA were collected in three years, and a dynamic SSA model was developed for different main stem leaf ranks under different N rates for two selected rice cultivars. SSA increased with tiller age. The SSA of the same leaf rank increased with increase in N rate. The maximum SSA increased with leaf rank from the first to the third leaf, then decreased from the third to the final leaf. The relationship between the maximum SSA and leaf rank on main stem could be described with a linear piecewise function. The change of SSA with thermal time (TT was described by a logistic equation. A variety parameter (the maximum SSA of the 3rd leaf on main stem and a nitrogen factor were introduced to quantify the effect of cultivar and N rate on SSA. The model was validated against data collected from both pot and field experiments. The relative root mean square error (RRMSE was 11.56% and 14.05%, respectively. The resulting models could be used for virtual rice plant modeling and plant-type design.

  9. A dynamic compartment model for evaluating transfer of radionuclide into rice-plant after acute release

    International Nuclear Information System (INIS)

    Keum, D.K.; Lee, H.S.; Choi, H.J.; Kang, H.S.; Lee, C.W.

    2004-01-01

    In this paper a dynamic compartment model is presented to estimate the transfer of radionuclides deposited on rice-fields after an accidental release. The present model includes a surface water compartment and a direct shoot-base absorption from the surface water to the rice plant to account for the flooded condition of rice-fields, which are major features discriminating the present model from the existing model. In order to test the validity of model, a number of simulated Cs-137 deposition experiments were performed while growing rice-plant in a green house. For the experiments the radionuclide was indirectly treated in the root zone soil before transplanting and on the surface water without a direct contamination of rice-plant after transplanting. In the first year of deposition the shoot-base absorption was a predominant process for the transfer of radionuclide into rice when the radionuclide was treated on the surface water, and from the second year, the root-uptake was dominant. The model calculation predicted reasonably well the first year experimental result showing the importance of shoot base absorption as well as the concentration of rice-body and grain measured from respective rice-plant grown consecutively on the contaminated soils for years. (author)

  10. Forecasting of cadmium in rice plants by air pollution

    Energy Technology Data Exchange (ETDEWEB)

    Tatekawa, H; Kanno, T; Saito, S; Tachiya, H

    1973-10-01

    Air pollution by cadmium, zinc, lead and copper dusts from the Aizu Refinery was investigated by measuring air quality and by checking the cadmium content in rice plants in relation to the time of absorption of Cd from the air. The are was measured at 13 locations involving various directions and distances; samples were taken at the end of every month and analyzed by spectrophotometry. During the rice culture period of 4 mo, the northwestern and eastern sampling locations at a distance of 1.5 km each had heavy settling particles, ranging between 5 and 9 kg/sq km. The ratios of heavy Cd, 1; Cu, 2.1; Z, 125; and lead, 15.5. To the east, the ratios were Cd, 1; Cu, 2.1; Z, 130; and Pb, 12.1. There was a close correlation between the Cd and Cd content in approximately 20% between planting of seedlings and the first ear formation; 8% during the early stage of ear formation; and 72% during the ripening stage. Pollution from the refinery should be controlled particularly during the 45 days of maturity of rice plants.

  11. Effects of soil's properties on transfer of 137Cs to rice plants through plant uptake after soil deposition

    International Nuclear Information System (INIS)

    Keum, Dong-Kwon; Lee, Hansoo; Kang, Hee-Seok; Jun, In; Choi, Yong-Ho; Lee, Chang-Woo

    2007-01-01

    This paper presents a dynamic compartment model to appraise the concentration of 137 Cs in agricultural plants as a result of a soil deposition. The present model used the Absalom model as a module to account for the effects of a soil's properties (pH, soil clay content, organic matter content, and exchangeable potassium) on a plant uptake, and the leaching and fixation process of 137 Cs in a soil. The model was tested by comparing the model predictions of the 137 Cs aggregated transfer factors for rice plants with those obtained as results of simulated 137 Cs soil deposition experiments with seventeen paddy soils of different properties, all of which were performed before a transplanting of the rice. Predicted 137 Cs TF a values of the rice plants were found to be comparable with those observed. (author)

  12. Enhanced disease resistance and drought tolerance in transgenic rice plants overexpressing protein elicitors from Magnaporthe oryzae.

    Science.gov (United States)

    Wang, Zhenzhen; Han, Qiang; Zi, Qian; Lv, Shun; Qiu, Dewen; Zeng, Hongmei

    2017-01-01

    Exogenous application of the protein elicitors MoHrip1 and MoHrip2, which were isolated from the pathogenic fungus Magnaporthe oryzae (M. oryzae), was previously shown to induce a hypersensitive response in tobacco and to enhance resistance to rice blast. In this work, we successfully transformed rice with the mohrip1 and mohrip2 genes separately. The MoHrip1 and MoHrip2 transgenic rice plants displayed higher resistance to rice blast and stronger tolerance to drought stress than wild-type (WT) rice and the vector-control pCXUN rice. The expression of salicylic acid (SA)- and abscisic acid (ABA)-related genes was also increased, suggesting that these two elicitors may trigger SA signaling to protect the rice from damage during pathogen infection and regulate the ABA content to increase drought tolerance in transgenic rice. Trypan blue staining indicated that expressing MoHrip1 and MoHrip2 in rice plants inhibited hyphal growth of the rice blast fungus. Relative water content (RWC), water usage efficiency (WUE) and water loss rate (WLR) were measured to confirm the high capacity for water retention in transgenic rice. The MoHrip1 and MoHrip2 transgenic rice also exhibited enhanced agronomic traits such as increased plant height and tiller number.

  13. Low Temperature Storage of Southern Rice Black-Streaked Dwarf Virus-Infected Rice Plants Cannot Sustain Virus Transmission by the Vector.

    Science.gov (United States)

    Liu, Danfeng; Li, Pei; Han, Yongqiang; Lei, Wenbin; Hou, Maolin

    2016-02-01

    Southern rice black-streaked dwarf virus (SRBSDV) is a novel virus transmitted by white-backed planthopper Sogatella furcifera (Hováth) (Hemiptera: Delphacidae). Due to low virus transmission efficiency by the planthopper, researchers are frequently confronted with shortage of viruliferous vectors or infected rice plants, especially in winter and the following spring. To find new ways to maintain virus-infected materials, viral rice plants were stored at -80°C for 45 or 140 d and evaluated as virus sources in virus transmission by the vector. SRBSDV virions were not degraded during storage at -80°C as indicated by reverse transcription-polymerase chain reaction and reverse transcription real-time PCR detection. The planthopper nymphs fed on the infected thawed plants for 48 h survived at about 40% and showed positive detection of SRBSDV, but they lost the virus after feeding for another 20 d (the circulative transmission period) on noninfected plants. Transmission electron microscope images indicated broken capsid of virions in infected thawed leaves in contrast to integrity capsid of virions in infected fresh leaves. These results show that low temperature storage of SRBSDV-infected rice plants cannot sustain virus transmission by white-backed planthopper. © The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  14. Antimicrobial Activity of Plant Extracts from Aloe Vera, Citrus Hystrix, Sabah Snake Grass and Zingiber Officinale against Pyricularia Oryzae that causes Rice Blast Disease in Paddy Plants

    Science.gov (United States)

    Uda, M. N. A.; Harzana Shaari, N.; Shamiera. Said, N.; Hulwani Ibrahim, Nur; Akhir, Maisara A. M.; Khairul Rabani Hashim, Mohd; Salimi, M. N.; Nuradibah, M. A.; Hashim, Uda; Gopinath, Subash C. B.

    2018-03-01

    Rice blast disease, caused by the fungus known as Pyricularia oryzae, has become an important and serious disease of rice worldwide. Around 50% of production may be lost in a field moderately affected by infection and each year the fungus destroys rice, which is enough to feed an estimated 60 million people. Therefore, use of herbal plants offer an alternative for the management of plant diseases. Herbal plant like Aloe vera, Citrus hystrix, Sabah snake grass and Zingiber officinale extracts can be used for controlling disease of rice blast. In this study, these four herbal plants were used for evaluating antimicrobial activity against rice plant fungus Pyricularia oryzae, which causes rice blast disease.

  15. Plant root transcriptome profiling reveals a strain-dependent response during Azospirillum-rice cooperation

    Directory of Open Access Journals (Sweden)

    Benoît eDrogue

    2014-11-01

    Full Text Available Cooperation involving Plant Growth-Promoting Rhizobacteria results in improvements of plant growth and health. While pathogenic and symbiotic interactions are known to induce transcriptional changes for genes related to plant defence and development, little is known about the impact of phytostimulating rhizobacteria on plant gene expression. This study aims at identifying genes significantly regulated in rice roots upon Azospirillum inoculation, considering possible favored interaction between a strain and its original host cultivar. Genome-wide analyses of Oryza sativa japonica cultivars Cigalon and Nipponbare were performed, by using microarrays, seven days post inoculation with A. lipoferum 4B (isolated from Cigalon or Azospirillum sp. B510 (isolated from Nipponbare and compared to the respective non-inoculated condition. A total of 7,384 genes were significantly regulated, which represent about 16 % of total rice genes. A set of 34 genes is regulated by both Azospirillum strains in both cultivars, including a gene orthologous to PR10 of Brachypodium, and these could represent plant markers of Azospirillum-rice interactions. The results highlight a strain-dependent response of rice, with 83 % of the differentially expressed genes being classified as combination-specific. Whatever the combination, most of the differentially expressed genes are involved in primary metabolism, transport, regulation of transcription and protein fate. When considering genes involved in response to stress and plant defence, it appears that strain B510, a strain displaying endophytic properties, leads to the repression of a wider set of genes than strain 4B. Individual genotypic variations could be the most important driving force of rice roots gene expression upon Azospirillum inoculation. Strain-dependent transcriptional changes observed for genes related to auxin and ethylene signalling highlight the complexity of hormone signalling networks in the Azospirillum-rice

  16. Untapped Endophytic Colonization and Plant Growth-Promoting Potential of the Genus Novosphingobium to Optimize Rice Cultivation

    OpenAIRE

    Rangjaroen, Chakrapong; Sungthong, Rungroch; Rerkasem, Benjavan; Teaumroong, Neung; Noisangiam, Rujirek; Lumyong, Saisamorn

    2017-01-01

    With the aim of searching for potent diazotrophic bacteria that are free of public health concerns and optimize rice cultivation, the endophytic colonization and plant growth-promoting activities of some endophytic diazotrophic bacteria isolated from rice were evaluated. Among these bacteria, the emerging diazotrophic strains of the genus Novosphingobium effectively associated with rice plant interiors and consequently promoted the growth of rice, even with the lack of a nitrogen source. Thes...

  17. Prediction of tritium behavior in rice plant after a short-term exposure of HTO

    International Nuclear Information System (INIS)

    Yook, Dae Sik; Lee, Kun Jai; Choi, Heui Joo; Lee, Chang Min

    2001-01-01

    In many Asian countries including Korea, rice is a very important food crop. Its grain is consumed by humans and its straw is used to feed animals. Because four CANDU reactors are in operation in Korea, relatively large amounts of tritium are released into the environment and the dose by these tritium in the rice plant must be estimated. Since 1997, KAERI (Korea Atomic Energy Research Institute) has carried out experimental studies to obtain domestic data on various parameters related to the direct tritium contamination of plant. But the analysis of the tritium behavior in the rice plant has been insufficient. In this study, the behavior of the tritium in the rice plant is predicted and compared with the measurement performed at KAERI. Using the conceptual model of the soil-plant-atmosphere tritiated water transport system which was suggested by Charles E. Murphy, transient tritium concentrations in soil and leaves were predicted. If the effect of tritium concentration in the soil is taken into account, the tritium concentration in leaves can be described by a double exponential model, however if the tritium concentration in the soil is disregarded, the tritium concentration in leaves can be described by a single exponential term like other relevant models e.g. UFOTRI or STAR-H3 model. The results can be used to predict the tritium concentration in the rice plant near the plant site and to estimate the ingestion dose after the release of tritium to the environment

  18. Translocation of radiocesium from stems and leaves of plants and the effect on radiocesium concentrations in newly emerged plant tissues

    International Nuclear Information System (INIS)

    Tagami, Keiko; Uchida, Shigeo; Ishii, Nobuyoshi; Kagiya, Shigeo

    2012-01-01

    An accident occurred at the Fukushima Dai-ichi Nuclear Power Plant in March 2011 at which time large amounts of radionuclides were released into the atmosphere and the sea. In early May 2011, it was found that newly emerged tea (Camellia sinensis) leaves contained radiocesium, both 134 Cs and 137 Cs in some areas more than 300 km away from the Fukushima plant. To understand the mechanisms of radiocesium transfer to newly emerged tissues (shoots, leaves and fruits) of other plants in the future, radiocesium concentrations in newly emerged leaves of 14 plant species collected from the sampling areas in and near National Institute of Radiological Sciences in Chiba, Japan. The studied plant types were: (1) herbaceous plants, (2) woody plants with no old leaves at the time of the March accident, and (3) woody plants with old leaves out before the accident. About 40–50 d after the start of the accident, newly emerged leaves from woody plant with old leaves tended to show higher values than other woody or herbaceous plants. Concentrations of radiocesium in newly emerged tissues of trees decreased with time, but they did not decrease to the level of herbaceous plants. The type of the plant and presence of old leaves at the time of the heavy deposition period affected the radiocesium concentrations in newly emerged tissues.

  19. [Effects of azadirachtin on rice plant volatiles induced by Nilaparvata lugens].

    Science.gov (United States)

    Lu, Hai-Yan; Liu, Fang; Zhu, Shu-De; Zhang, Qing

    2010-01-01

    With the method of solid phase microextraction (SPME), a total of twenty-five volatiles were collected from rice plants induced by Nilaparvata lugens, and after applying azadirachtin fourteen of them were qualitatively identified by gas chromatography coupled by mass spectrometry (GC-MS), mainly of nine kinds of sesquiterpenes. Comparing with healthy rice plants, the plants attacked by N. lugens had more kinds of volatiles, including limonene, linalool, methyl salicylate, unknown 6, unknown 7, zingiberene, nerolidol, and hexadecane. Applying azadirachtin did not result in the production of new kind volatiles, but affected the relative concentrations of the volatiles induced by N. lugens. The proportions of limonene, linalool, methyl salicylate, unknown 6, zingiberene, and hexadecane changed obviously with the concentration of applied azadirachtin, while those of methyl salicylate, unknown 6, unknown 7, zingiberene, and nerolidol changed significantly with the days after azadirachtin application. Azadirachtin concentration, rice variety, and N. lugens density had significant interactions on the relative concentrations of all test N. lugens-induced volatiles.

  20. Studies on the physiological changes in the rice plants infected with Xanthomonas campestris pv. oryzae, (3)

    International Nuclear Information System (INIS)

    Watanabe, Minoru; Samejima, Shin-ichi; Hosokawa, Daijiro

    1980-01-01

    Accumulation of 14 C-photosynthetic assimilates in rice leaves infected with Xanthomonas campestris pv. oryzae was studied by using autoradiography for the purpose of elucidating the movement of nutrients from healthy tissues to the infected parts. When rice plants were exposed to 14 CO 2 immediately after inoculation, 14 C-photosynthetic assimilates did not accumulate in and around the inoculated spots of leaves until the lesions became visible, i.e., approximately 7 days after inoculation. When the leaves were exposed to 14 CO 2 before visible lesions appeared, 2 and 5 days after inoculation, the assimilates did not accumulate in the inoculated areas, but apparently accumulated in the lesions 24 hr later on from the exposure of leaves with visible lesions. In the newly formed lesions, accumulation site corresponded to the yellow streak parts of lesions along leaf veins. In the large and old lesions, assimilates hardly any accumulated in the center of lesions, grayish-white in color, but accumulated in the border parts of lesions adjacent to healthy tissues which are developing and yellow streak in symptoms. (author)

  1. Evaluating Leaf and Canopy Reflectance of Stressed Rice Plants to Monitor Arsenic Contamination

    Directory of Open Access Journals (Sweden)

    Varaprasad Bandaru

    2016-06-01

    Full Text Available Arsenic contamination is a serious problem in rice cultivated soils of many developing countries. Hence, it is critical to monitor and control arsenic uptake in rice plants to avoid adverse effects on human health. This study evaluated the feasibility of using reflectance spectroscopy to monitor arsenic in rice plants. Four arsenic levels were induced in hydroponically grown rice plants with application of 0, 5, 10 and 20 µmol·L−1 sodium arsenate. Reflectance spectra of upper fully expanded leaves were acquired over visible and infrared (NIR wavelengths. Additionally, canopy reflectance for the four arsenic levels was simulated using SAIL (Scattering by Arbitrarily Inclined Leaves model for various soil moisture conditions and leaf area indices (LAI. Further, sensitivity of various vegetative indices (VIs to arsenic levels was assessed. Results suggest that plants accumulate high arsenic amounts causing plant stress and changes in reflectance characteristics. All leaf spectra based VIs related strongly with arsenic with coefficient of determination (r2 greater than 0.6 while at canopy scale, background reflectance and LAI confounded with spectral signals of arsenic affecting the VIs’ performance. Among studied VIs, combined index, transformed chlorophyll absorption reflectance index (TCARI/optimized soil adjusted vegetation index (OSAVI exhibited higher sensitivity to arsenic levels and better resistance to soil backgrounds and LAI followed by red edge based VIs (modified chlorophyll absorption reflectance index (MCARI and TCARI suggesting that these VIs could prove to be valuable aids for monitoring arsenic in rice fields.

  2. Rice microstructure

    Science.gov (United States)

    An understanding of plant structure is desirable to obtain a clear idea of the overall impact of a crop. A mature rice plant consists of leafy components (left in the field post-harvest) and paddy rice (collected). The rice plant is supported by a hollow stem (culm) with leaf sheaths attached to nod...

  3. Good manufacturing practices production of a purification-free oral cholera vaccine expressed in transgenic rice plants.

    Science.gov (United States)

    Kashima, Koji; Yuki, Yoshikazu; Mejima, Mio; Kurokawa, Shiho; Suzuki, Yuji; Minakawa, Satomi; Takeyama, Natsumi; Fukuyama, Yoshiko; Azegami, Tatsuhiko; Tanimoto, Takeshi; Kuroda, Masaharu; Tamura, Minoru; Gomi, Yasuyuki; Kiyono, Hiroshi

    2016-03-01

    The first Good Manufacturing Practices production of a purification-free rice-based oral cholera vaccine (MucoRice-CTB) from transgenic plants in a closed cultivation system yielded a product meeting regulatory requirements. Despite our knowledge of their advantages, plant-based vaccines remain unavailable for human use in both developing and industrialized countries. A leading, practical obstacle to their widespread use is producing plant-based vaccines that meet governmental regulatory requirements. Here, we report the first production according to current Good Manufacturing Practices of a rice-based vaccine, the cholera vaccine MucoRice-CTB, at an academic institution. To this end, we established specifications and methods for the master seed bank (MSB) of MucoRice-CTB, which was previously generated as a selection-marker-free line, evaluated its propagation, and given that the stored seeds must be renewed periodically. The production of MucoRice-CTB incorporated a closed hydroponic system for cultivating the transgenic plants, to minimize variations in expression and quality during vaccine manufacture. This type of molecular farming factory can be operated year-round, generating three harvests annually, and is cost- and production-effective. Rice was polished to a ratio of 95 % and then powdered to produce the MucoRice-CTB drug substance, and the identity, potency, and safety of the MucoRice-CTB product met pre-established release requirements. The formulation of MucoRice-CTB made by fine-powdering of drug substance and packaged in an aluminum pouch is being evaluated in a physician-initiated phase I study.

  4. Deposition velocity of gaseous organic iodine from the atmosphere to rice plants

    International Nuclear Information System (INIS)

    Muramatsu, Yasuyuki; Shigeo-Uchida; Sumiya, Misako; Ohmomo, Yoichiro

    1996-01-01

    To obtain parameter values for the assessment of 129 I transfer from the atmosphere to rice, deposition of CH 3 I to rice plants has been studied. The mass normalized deposition velocity (V D ) of CH 3 I for rough (unhulled) rice was 0.00048 cm 3 g -1 s -1 , which is about 1/300 of that of I 2 . Translocation of iodine, deposited as CH 3 I on leaves and stems, to rice grain was negligibly small. Distribution of iodine between hull and inner part of the grain was found to depend also on the chemical forms of atmospheric iodine to be deposited. The ratio of the iodine distribution in a grain exposed to CH 3 I was as follows: rough rice: brown rice (hulled rice):polished rice = 1.0:0.49:0.38. The distribution ratio in polished grains for CH 3 I exposed rice was about 20 times higher than that for I 2 . 22 refs., 1 fig., 6 tabs

  5. Southern rice black-streaked dwarf virus: a white-backed planthopper transmitted fijivirus threadening rice production in Asia

    Directory of Open Access Journals (Sweden)

    Guohui eZhou

    2013-09-01

    Full Text Available Southern rice black-streaked dwarf virus (SRBSDV, a nonenveloped icosahedral virus with a genome of 10 double-stranded RNA segments, is a novel species in the genus Fijivirus (family Reoviridae first recognized in 2008. Rice plants infected with this virus exhibit symptoms similar to those caused by Rice black-streaked dwarf virus. Since 2009, the virus has rapidly spread and caused serious rice losses in East and Southeast Asia. Significant progress has been made in recent years in understanding this disease, especially about the functions of the viral genes, rice–virus–insect interactions, and epidemiology and control measures. The virus can be efficiently transmitted by the white-backed planthopper (WBPH, Sogatella furcifera in a persistent circulative propagative manner but cannot be transmitted by the brown planthopper (Nilaparvata lugens and small brown planthopper (Laodelphax striatellus. Rice, maize, Chinese sorghum (Coix lacryma-jobi and other grass weeds can be infected via WBPH. However, only rice plays a major role in the virus infection cycle because of the vector's preference. In Southeast Asia, WBPH is a long-distance migratory rice pest. The disease cycle can be described as follows: SRBSDV and its WBPH vector overwinter in warm tropical or sub-tropical areas; viruliferous WBPH adults carry the virus from south to north via long-distance migration in early spring, transmit the virus to rice seedlings in the newly colonized areas, and lay eggs on the infected seedlings; the next generation of WBPHs propagate on infected seedlings, become viruliferous, disperse, and cause new disease outbreaks. Several molecular and serological methods have been developed to detect SRBSDV in plant tissues and individual insects. Control measures based on protection from WBPH, including seedbed coverage, chemical seed treatments, and chemical spraying of seedlings, have proven effective in China.

  6. Physiological studies on photochemical oxidant injury in rice plants. III. Relationship between abscisic acid (ABA) and water metabolism in water-stressed rice plants

    Energy Technology Data Exchange (ETDEWEB)

    Jeong, Y.H.; Ota, Y.

    1981-12-01

    Several experiments were carried out to determine the effects of exogenously applied ABA on water metabolism, and to clarify the endogenous ABA relationships in ozone-sensitivity under different soil water content in rice plants. The rice plants were cultivated in soil with 60, 80, and 100% of maximum water holding capacity and under submerged condition. The results of the experiments were as follows: ozone injury was reduced with increasing ABA content of which production was increased under water stress conditions. Under water stressed conditions, the rate of water loss was decreased with increasing concentration of ABA applied exogenously. It may be assumed that the ozone-sensitivity is closely related to the stomatal closure caused by the increased ABA content due to water stress. 5 references, 4 tables.

  7. Reduction of Cadmium Uptake of Rice Plants Using Soil Amendments in High Cadmium Contaminated Soil: A Pot Experiment

    Directory of Open Access Journals (Sweden)

    Dian Siswanto

    2013-05-01

    Full Text Available The aims of this study were to investigate the effect of agricultural residues on reducing cadmium uptake in rice plants. The rice plants growing on no cadmium/free cadmium soils (N, Cd soils (Cds, and Cd soils each amended with 1% w/w of coir pith (CP, coir pith modified with sodium hydroxide (CPm and corncob (CC under high cadmium contaminated soil with an average 145 mg Cd kg-1 soil were investigated. The results showed that the cumulative transpiration of rice grown in various treatments under high cadmium contaminated soil followed the order: Cds > CPm ≥ CP ≥ CC. These transpirations directly influenced cadmium accumulation in shoots and husks of rice plants. The CC and CP seemed to work to reduce the cadmium uptake by rice plants indicated by accumulated cadmium in the husk that were 2.47 and 7.38 mg Cd kg-1 dry weight, respectively. Overall, transpiration tended to drive cadmium accumulation in plants for rice grown in high cadmium contaminated soil. The more that plants uptake cadmium, the lower cadmium that remains in the soil.

  8. Constitutive expression of CaPLA1 conferred enhanced growth and grain yield in transgenic rice plants.

    Science.gov (United States)

    Park, Ki Youl; Kim, Eun Yu; Seo, Young Sam; Kim, Woo Taek

    2016-03-01

    Phospholipids are not only important components of cell membranes, but participate in diverse processes in higher plants. In this study, we generated Capsicum annuum phospholipiase A1 (CaPLA1) overexpressing transgenic rice (Oryza sativa L.) plants under the control of the maize ubiquitin promoter. The T4 CaPLA1-overexpressing rice plants (Ubi:CaPLA1) had a higher root:shoot mass ratio than the wild-type plants in the vegetative stage. Leaf epidermal cells from transgenic plants had more cells than wild-type plants. Genes that code for cyclin and lipid metabolic enzymes were up-regulated in the transgenic lines. When grown under typical paddy field conditions, the transgenic plants produced more tillers, longer panicles and more branches per panicle than the wild-type plants, all of which resulted in greater grain yield. Microarray analysis suggests that gene expressions that are related with cell proliferation, lipid metabolism, and redox state were widely altered in CaPLA1-overexpressing transgenic rice plants. Ubi:CaPLA1 plants had a reduced membrane peroxidation state, as determined by malondialdehyde and conjugated diene levels and higher peroxidase activity than wild-type rice plants. Furthermore, three isoprenoid synthetic genes encoding terpenoid synthase, hydroxysteroid dehydrogenase and 3-hydroxy-3-methyl-glutaryl-CoA reductase were up-regulated in CaPLA1-overexpressing plants. We suggest that constitutive expression of CaPLA1 conferred increased grain yield with enhanced growth in transgenic rice plants by alteration of gene activities related with cell proliferation, lipid metabolism, membrane peroxidation state and isoprenoid biosynthesis.

  9. Transfer of technetium in the soil-rice plant system

    International Nuclear Information System (INIS)

    Yanagisawa, K.; Muramatsu, Y.

    1995-01-01

    In order to assess the behavior of Tc in flooded soil-plant systems, laboratory experiments have been done using 95m Tc as a tracer. Two common soil types in Japan, Andosol and Gray lowland soils, were used. Soil-plant transfer factors of Tc in rice grain were very low, i.e. 5 x 10 -5 for Andosol and 6 x 10 -4 for Gray lowland soil. It was found that the Tc concentrations in rice plants were influenced by those in soil solutions. Concentrations of 95m Tc in both soil solutions decreased rapidly in the early period of cultivation. It was observed that redox-potential (Eh) also decreased markedly following flooding. A relationship was found between the decrease of the 95m Tc concentrations in soil solutions and the drop of Eh in the soils. The Tc (VII) added to soil was transformed to insoluble Tc (IV) under the reduced conditions existing in flooded soil. (author). 10 refs., 2 figs., 4 tabs

  10. Cyanobacteria-mediated phenylpropanoids and phytohormones in rice (Oryza sativa) enhance plant growth and stress tolerance.

    Science.gov (United States)

    Singh, Dhananjaya P; Prabha, Ratna; Yandigeri, Mahesh S; Arora, Dilip K

    2011-11-01

    Phenylpropanoids, flavonoids and plant growth regulators in rice (Oryza sativa) variety (UPR 1823) inoculated with different cyanobacterial strains namely Anabaena oryzae, Anabaena doliolum, Phormidium fragile, Calothrix geitonos, Hapalosiphon intricatus, Aulosira fertilissima, Tolypothrix tenuis, Oscillatoria acuta and Plectonema boryanum were quantified using HPLC in pot conditions after 15 and 30 days. Qualitative analysis of the induced compounds using reverse phase HPLC and further confirmation with LC-MS/MS showed consistent accumulation of phenolic acids (gallic, gentisic, caffeic, chlorogenic and ferulic acids), flavonoids (rutin and quercetin) and phytohormones (indole acetic acid and indole butyric acid) in rice leaves. Plant growth promotion (shoot, root length and biomass) was positively correlated with total protein and chlorophyll content of leaves. Enzyme activity of peroxidase and phenylalanine ammonia lyase and total phenolic content was fairly high in rice leaves inoculated with O. acuta and P. boryanum after 30 days. Differential systemic accumulation of phenylpropanoids in plant leaves led us to conclude that cyanobacterial inoculation correlates positively with plant growth promotion and stress tolerance in rice. Furthermore, the study helped in deciphering possible mechanisms underlying plant growth promotion and stress tolerance in rice following cyanobacterial inoculation and indicated the less explored avenue of cyanobacterial colonization in stress tolerance against abiotic stress.

  11. RiceAtlas, a spatial database of global rice calendars and production.

    Science.gov (United States)

    Laborte, Alice G; Gutierrez, Mary Anne; Balanza, Jane Girly; Saito, Kazuki; Zwart, Sander J; Boschetti, Mirco; Murty, M V R; Villano, Lorena; Aunario, Jorrel Khalil; Reinke, Russell; Koo, Jawoo; Hijmans, Robert J; Nelson, Andrew

    2017-05-30

    Knowing where, when, and how much rice is planted and harvested is crucial information for understanding the effects of policy, trade, and global and technological change on food security. We developed RiceAtlas, a spatial database on the seasonal distribution of the world's rice production. It consists of data on rice planting and harvesting dates by growing season and estimates of monthly production for all rice-producing countries. Sources used for planting and harvesting dates include global and regional databases, national publications, online reports, and expert knowledge. Monthly production data were estimated based on annual or seasonal production statistics, and planting and harvesting dates. RiceAtlas has 2,725 spatial units. Compared with available global crop calendars, RiceAtlas is nearly ten times more spatially detailed and has nearly seven times more spatial units, with at least two seasons of calendar data, making RiceAtlas the most comprehensive and detailed spatial database on rice calendar and production.

  12. Biochar amendment reduced methylmercury accumulation in rice plants

    Energy Technology Data Exchange (ETDEWEB)

    Shu, Rui; Wang, Yongjie [School of Environment, Nanjing University, State Key Laboratory of Pollution Control and Resource Reuse, Nanjing, Jiangsu Province, People’s Republic of China (China); Zhong, Huan, E-mail: zhonghuan@nju.edu.cn [School of Environment, Nanjing University, State Key Laboratory of Pollution Control and Resource Reuse, Nanjing, Jiangsu Province, People’s Republic of China (China); Environmental and Life Sciences Program (EnLS), Trent University, Peterborough, Ontario (Canada)

    2016-08-05

    Highlights: • Biochar amendment could evidently reduce methylmercury (MeHg) levels in rice grain. • Biochar could enhance microbial production of MeHg, probably by providing sulfate. • Biochar could immobilize MeHg in soil, and reduce MeHg availability to rice plants. • Biochar amendment increased grain biomass, leading to biodilution of MeHg in grain. - Abstract: There is growing concern about methylmercury (MeHg) accumulation in rice grains and thus enhanced dietary exposure to MeHg in Asian countries. Here, we explored the possibility of reducing grain MeHg levels by biochar amendment, and the underlying mechanisms. Pot (i.e., rice cultivation in biochar amended soils) and batch experiments (i.e., incubation of amended soils under laboratory conditions) were carried out, to investigate MeHg dynamics (i.e., MeHg production, partitioning and phytoavailability in paddy soils, and MeHg uptake by rice) under biochar amendment (1–4% of soil mass). We demonstrate for the first time that biochar amendment could evidently reduce grain MeHg levels (49–92%). The declines could be attributed to the combined effects of: (1) increased soil MeHg concentrations, probably explained by the release of sulfate from biochar and thus enhanced microbial production of MeHg (e.g., by sulfate-reducing bacteria), (2) MeHg immobilization in soils, facilitated by the large surface areas and high organosulfur content of biochar, and (3) biodilution of MeHg in rice grains, due to the increased grain biomass under biochar amendment (35–79%). These observations together with mechanistic explanations improve understanding of MeHg dynamics in soil-rice systems, and support the possibility of reducing MeHg phytoaccumulation under biochar amendment.

  13. Biochar amendment reduced methylmercury accumulation in rice plants

    International Nuclear Information System (INIS)

    Shu, Rui; Wang, Yongjie; Zhong, Huan

    2016-01-01

    Highlights: • Biochar amendment could evidently reduce methylmercury (MeHg) levels in rice grain. • Biochar could enhance microbial production of MeHg, probably by providing sulfate. • Biochar could immobilize MeHg in soil, and reduce MeHg availability to rice plants. • Biochar amendment increased grain biomass, leading to biodilution of MeHg in grain. - Abstract: There is growing concern about methylmercury (MeHg) accumulation in rice grains and thus enhanced dietary exposure to MeHg in Asian countries. Here, we explored the possibility of reducing grain MeHg levels by biochar amendment, and the underlying mechanisms. Pot (i.e., rice cultivation in biochar amended soils) and batch experiments (i.e., incubation of amended soils under laboratory conditions) were carried out, to investigate MeHg dynamics (i.e., MeHg production, partitioning and phytoavailability in paddy soils, and MeHg uptake by rice) under biochar amendment (1–4% of soil mass). We demonstrate for the first time that biochar amendment could evidently reduce grain MeHg levels (49–92%). The declines could be attributed to the combined effects of: (1) increased soil MeHg concentrations, probably explained by the release of sulfate from biochar and thus enhanced microbial production of MeHg (e.g., by sulfate-reducing bacteria), (2) MeHg immobilization in soils, facilitated by the large surface areas and high organosulfur content of biochar, and (3) biodilution of MeHg in rice grains, due to the increased grain biomass under biochar amendment (35–79%). These observations together with mechanistic explanations improve understanding of MeHg dynamics in soil-rice systems, and support the possibility of reducing MeHg phytoaccumulation under biochar amendment.

  14. Sago-Type Palms Were an Important Plant Food Prior to Rice in Southern Subtropical China

    Science.gov (United States)

    Yang, Xiaoyan; Barton, Huw J.; Wan, Zhiwei; Li, Quan; Ma, Zhikun; Li, Mingqi; Zhang, Dan; Wei, Jun

    2013-01-01

    Poor preservation of plant macroremains in the acid soils of southern subtropical China has hampered understanding of prehistoric diets in the region and of the spread of domesticated rice southwards from the Yangtze River region. According to records in ancient books and archaeological discoveries from historical sites, it is presumed that roots and tubers were the staple plant foods in this region before rice agriculture was widely practiced. But no direct evidences provided to test the hypothesis. Here we present evidence from starch and phytolith analyses of samples obtained during systematic excavations at the site of Xincun on the southern coast of China, demonstrating that during 3,350–2,470 aBC humans exploited sago palms, bananas, freshwater roots and tubers, fern roots, acorns, Job's-tears as well as wild rice. A dominance of starches and phytoliths from palms suggest that the sago-type palms were an important plant food prior to the rice in south subtropical China. We also believe that because of their reliance on a wide range of starch-rich plant foods, the transition towards labour intensive rice agriculture was a slow process. PMID:23667584

  15. Conversion of the fungicide, ziram in rice plants

    International Nuclear Information System (INIS)

    Kumarasamy, R.; Raghu, K.

    1976-01-01

    Zinc dimethyldithiocarbamate (ziram) is a toliar fungicide used for the control of the blast disease of rice caused by Pyricularia oryzae, and is also used for the control of the plant diseases in crops like groundnut, cotton, etc. Since there is lack of data on the conversion products of this fungicide. This investigation was carried out. The results of the author's recent studies with 35 S-labelled ziram in rice seedlings were reported. The 35 S-Labelled ziram (specific activity 1.5 m Ci/m mole) was sprayed on the rice seedlings of 25 days old. At different intervals of time, the seedlings were removed, washed thoroughly, cut into pieces, and extracted with 80% ethanol. By the method described in ''K. Raghu et al., Origin and fate of chemical residents in food, agriculture and fisheries, I.A.E.A., Vienna, 1975, pp. 137-148,'' the segments corresponding to the standards of dimethyl dithio carbamate-alanine (DDCA), DDC-glucoside (DDCG), thiazolidine-2-thione-4-carbamic acid (TTCA), unidentified divolent fungicide (X), and ziram were cut out and the radioactivity was counted in cocktail D scintillation fluid using an LS-100 Beckmann liquid scintillation counter. It is indeed interesting to note that ziram is converted in plant tissues into dimethyldithiocarbamate derivatives like DDCG, DDCA, TTCA and X within 24 hr after spraying. The amounts of these derivatives varied in the course of sampling up to 8 days after spraying. Further studies are needed as to the quantitative nature of these products, but the present report clearly demonstrates the formation of these conversion products in the rice leaves treated with ziram. (Kobatake, H.)

  16. Using SPOT-5 images in rice farming for detecting BPH (Brown Plant Hopper)

    International Nuclear Information System (INIS)

    Ghobadifar, F; Wayayok, A; Shattri, M; Shafri, H

    2014-01-01

    Infestation of rice plant-hopper such as Brown Plant Hopper (BPH) (Nilaparvata lugens) is one of the most notable risk in rice yield in tropical areas especially in Asia. In order to use visible and infrared images to detect stress in rice production caused by BPH infestation, several remote sensing techniques have been developed. Initial recognition of pest infestation by means of remote sensing will spreads, for precision farming practice. To address this issue, detection of sheath blight in rice farming was examined by using SPOT-5 images. Specific image indices such as Normalized decrease food production costs, limit environmental hazards, and enhance natural pest control before the problem Normalized Difference Vegetation Index (NDVI), Standard difference indices (SDI) and Ratio Vegetation Index (RVI) were used for analyses using ENVI 4.8 and SPSS software. Results showed that all the indices to recognize infected plants are significant at α = 0.01. Examination of the association between the disease indices indicated that band 3 (near infrared) and band 4 (mid infrared) have a relatively high correlation. The selected indices declared better association for detecting healthy plants from diseased ones. Consequently, these sorts of indices especially NDVI could be valued as indicators for developing techniques for detecting the sheath blight of rice by using remote sensing. This infers that they are useful for crop disease detection but the spectral resolution is probably not sufficient to distinguish plants with light infections (low severity level). Using the index as an indicator can clarify the threshold for zoning the outbreaks. Quick assessment information is very useful in precision farming to practice site specific management such as pesticide application

  17. Using SPOT-5 images in rice farming for detecting BPH (Brown Plant Hopper)

    Science.gov (United States)

    Ghobadifar, F.; Wayayok, A.; Shattri, M.; Shafri, H.

    2014-06-01

    Infestation of rice plant-hopper such as Brown Plant Hopper (BPH) (Nilaparvata lugens) is one of the most notable risk in rice yield in tropical areas especially in Asia. In order to use visible and infrared images to detect stress in rice production caused by BPH infestation, several remote sensing techniques have been developed. Initial recognition of pest infestation by means of remote sensing will spreads, for precision farming practice. To address this issue, detection of sheath blight in rice farming was examined by using SPOT-5 images. Specific image indices such as Normalized decrease food production costs, limit environmental hazards, and enhance natural pest control before the problem Normalized Difference Vegetation Index (NDVI), Standard difference indices (SDI) and Ratio Vegetation Index (RVI) were used for analyses using ENVI 4.8 and SPSS software. Results showed that all the indices to recognize infected plants are significant at α = 0.01. Examination of the association between the disease indices indicated that band 3 (near infrared) and band 4 (mid infrared) have a relatively high correlation. The selected indices declared better association for detecting healthy plants from diseased ones. Consequently, these sorts of indices especially NDVI could be valued as indicators for developing techniques for detecting the sheath blight of rice by using remote sensing. This infers that they are useful for crop disease detection but the spectral resolution is probably not sufficient to distinguish plants with light infections (low severity level). Using the index as an indicator can clarify the threshold for zoning the outbreaks. Quick assessment information is very useful in precision farming to practice site specific management such as pesticide application.

  18. Expression of Acidothermus cellulolyticus thermostable cellulases in tobacco and rice plants

    Directory of Open Access Journals (Sweden)

    Xiran Jiang

    2017-01-01

    Full Text Available The production of cellulases in plants is an economical method for the conversion of lignocellulosic biomass into fuels. Herein we report the expressions of two thermostable Acidothermus cellulolyticus cellulases, endo-1,4-β-D-glucanase (E1 and exoglucanase (Gux1, in tobacco and rice. To evaluate the expression of these recombinant cellulases, we expressed the full-length E1, the catalytic domains of E1 (E1cd and Gux1 (Gux1cd, as well as an E1–Gux1cd fusion enzyme in various subcellular compartments. In the case of tobacco, transgenic plants that expressed apoplast-localized E1 showed the highest level of activity, about three times higher than those that expressed the cytosolic E1. In the case of rice, the level of cellulase-specific activity in the transgenic plants ranged from 11 to 20 nmol 4-methylumbelliferone min−1 mg−1 total soluble protein. The recombinant cellulases exhibited good thermostability below 70 °C. Furthermore, transgenic rice leaves that were stored at room temperature for a month lost about 20% of the initial cellulase activity. Taken together, the results suggested that heterologous expression of thermostable cellulases in plants may be a viable option for biomass conversion.

  19. Whole-plant mineral partitioning during the reproductive development of rice (Oryza sativa L.)

    Energy Technology Data Exchange (ETDEWEB)

    Sperotto, R.A.; Vasconcelos, M.W.; Grusak, M.A.; Fett, J.

    2017-07-01

    Minimal information exists on whole-plant dynamics of mineral flow. Understanding these phenomena in a model plant such as rice could help in the development of nutritionally enhanced cultivars. A whole-plant mineral accumulation study was performed in rice (cv. Kitaake), using sequential harvests during reproductive development panicle exertion, grain filling, and full maturity stages in order to characterize mineral accumulation in roots, non-flag leaves, flag leaves, stems/sheaths, and panicles. Partition quotient analysis showed that Fe, Zn, Cu and Ni are preferentially accumulated in roots; Mn and Mg are accumulated in leaves; Mo, Ca, and S in roots and leaves; and K in roots, leaves and stems/sheaths. Correlation analysis indicated that changes in the concentrations of mineral pairs Fe-Mn, K-S, Fe-Ni, Cu-Mg, Mn-Ni, S-Mo, Mn-Ca, and Mn-Mg throughout the reproductive development of rice were positively correlated in all four of the above ground organs evaluated, with Fe-Mn and K-S being positively correlated also in roots, which suggest that root-to-shoot transfer is not driven simply by concentrations in roots. These analyses will serve as a starting point for a more detailed examination of mineral transport and accumulation in rice plants.

  20. Non-destructive neutron activation analysis studies on a withering disease of lowland rice occurring near an iodine plant

    International Nuclear Information System (INIS)

    Fukuzaki, N.; Moriyama, N.

    1985-01-01

    The withering disease of lowland rice that seems to be an injury caused by excess iodine was recognized in the paddy fields near an iodine isolation plant. To investigate the cause of this disease, a pot experiment of lowland rice was performed and iodine contents of soils and rice plants were determined by non-destructive neutron activation analysis. The soils of the disease-produced paddy fields were remarkably polluted with iodine, its content in roots of diseased rice plants was higher than the reported limiting values for the disease. (author)

  1. Understanding the molecular basis of plant growth promotional effect of Pseudomonas fluorescens on rice through protein profiling.

    Science.gov (United States)

    Kandasamy, Saveetha; Loganathan, Karthiba; Muthuraj, Raveendran; Duraisamy, Saravanakumar; Seetharaman, Suresh; Thiruvengadam, Raguchander; Ponnusamy, Balasubramanian; Ramasamy, Samiyappan

    2009-12-24

    Plant Growth Promoting Rhizobacteria (PGPR), Pseudomonas fluorescens strain KH-1 was found to exhibit plant growth promotional activity in rice under both in-vitro and in-vivo conditions. But the mechanism underlying such promotional activity of P. fluorescens is not yet understood clearly. In this study, efforts were made to elucidate the molecular responses of rice plants to P. fluorescens treatment through protein profiling. Two-dimensional polyacrylamide gel electrophoresis strategy was adopted to identify the PGPR responsive proteins and the differentially expressed proteins were analyzed by mass spectrometry. Priming of P. fluorescens, 23 different proteins found to be differentially expressed in rice leaf sheaths and MS analysis revealed the differential expression of some important proteins namely putative p23 co-chaperone, Thioredoxin h- rice, Ribulose-bisphosphate carboxylase large chain precursor, Nucleotide diPhosphate kinase, Proteosome sub unit protein and putative glutathione S-transferase protein. Functional analyses of the differential proteins were reported to be directly or indirectly involved in growth promotion in plants. Thus, this study confirms the primary role of PGPR strain KH-1 in rice plant growth promotion.

  2. Use of CRISPR/Cas Genome Editing Technology for Targeted Mutagenesis in Rice.

    Science.gov (United States)

    Xu, Rongfang; Wei, Pengcheng; Yang, Jianbo

    2017-01-01

    Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/CRISPR-associated protein (Cas) system is a newly emerging mutagenesis (gene-editing) tool in genetic engineering. Among the agriculturally important crops, several genes have been successfully mutated by the system, and some agronomic important traits have been rapidly generated, which indicates the potential applications in both scientific research and plant breeding. In this chapter, we describe a standard gene-editing procedure to effectively target rice genes and to make specific rice mutants using the CRISPR/Cas9 system mediated by Agrobacterium transformation.

  3. Genetics and Improvement of Bacterial Blight Resistance of Hybrid Rice in China

    Institute of Scientific and Technical Information of China (English)

    ZHANG Qi

    2009-01-01

    Since 1980s, rice breeding for resistance to bacterial blight has been rapidly progressing in China. The gene Xa4 was mainly used in three-line indica hybrid and two-line hybrid rice. The disease has been 'quiet' for 20 years in China, yet in recent years it has gradually emerged and been prevalent in fields planted with newly released rice varieties in the Changjiang River valley. Under the circumstances, scientists inevitably raised several questions: what causes the resurgence and what should we do next? And/or is resistance breeding still one of the main objectives in rice improvement? Which approach do we take on resistance breeding so that the resistance will be more durable, and the resistance gene will be used more efficiently? A combined strategy involving traditional method, molecular marker-assisted selection, and transgenic technology should bring a new era to the bacterial blight resistance hybrid rice breeding program. This review also briefly discusses and deliberates on issues related to the broadening of bacterial blight resistance, and suitable utilization of resistance genes, alternate planting of available resistance genes; and understands the virulent populations of the bacterial pathogen in China even in Asia.

  4. Assessment of total soil and plant trace elements in rice-based production systems in NE Italy

    Science.gov (United States)

    Bini, Claudio; Nadimi-Goki, Mandana; Kato, Yoichi; Vianello, Gilmo; Vittori, Livia; Wahsha, Mohammad; Spiandorello, Massimo

    2014-05-01

    Macro- and micronutrients concentrations, and PTEs contents in soils and plants (rice) from the rice district in the Venetian territory (NE Italy) have been determined by ICP-MS spectrometry, with the following aims: - to determine the background levels of macro- and microelements in the study area; - to assess possible contamination of soils and plants; - to calculate the Translocation Factor (TF) of metals from soil to plant, and the possible hazard for human health. Four rice plots with different rotation systems were investigated from seedling time to harvesting; sampling of soils (0-30cm) and plants was carried out 4 times during growing season (three replicates). Rice plants were separated into roots, stems, leaves and grains, and then oven-dried. Chemical and physical analyses were carried out at the Soil Science Lab of the University of Bologna and Venice, respectively. The results obtained point to a land with moderate soil contamination by trace elements (namely Li, Sn, Tl, Sr, Ti, Fe). Heavy metal (Sb, As, Be, Cd, Co, Cr, Ni, Pb, Cu, V, Zn ) concentrations in soils are below the threshold indicated by the Italian legislation (DM 152/2006). Cd, Sn, and Ti contents in soils are positively correlated with soil pH, while As, Fe, Li, Ti, Tl and Zn are negatively correlated with organic matter content. With the exception of Strontium, soil metal contents are always correlated between variable couples. HMs in plants vary according to the sampling season, texture and moisture, and soil pH. Most non-essential trace elements are accumulated in rice roots and, only in cases of essential micronutrients, in leaves. Therefore, rice can be assumed as an accumulator plant of As, Pb, Cr, Ba, and Ti, whereas it is as an indicator plant for Cu, Fe, Ni, Mn and Zn. The results of multiple linear regression analysis showed that soil pH has a larger effect on Ba, Cr, Cu, Fe, Mn, Ni, Ti and Zn concentrations in grain than other soil parameters. The average translocation of

  5. Mechanism study of sulfur fertilization mediating copper translocation and biotransformation in rice (Oryza sativa L.) plants.

    Science.gov (United States)

    Sun, Lijuan; Yang, Jianjun; Fang, Huaxiang; Xu, Chen; Peng, Cheng; Huang, Haomin; Lu, Lingli; Duan, Dechao; Zhang, Xiangzhi; Shi, Jiyan

    2017-07-01

    Metabolism of sulfur (S) is suggested to be an important factor for the homeostasis and detoxification of Cu in plants. We investigated the effects of S fertilizers (S 0 , Na 2 SO 4 ) on Cu translocation and biotransformation in rice plants by using multiple synchrotron-based techniques. Fertilization of S increased the biomass and yield of rice plants, as well as the translocation factor of Cu from root to shoot and shoot to grain, resulting in enhanced Cu in grain. Sulfur K-edge X-ray near edge structure (XANES) analysis showed that fertilization of S increased the concentration of glutathione in different rice tissues, especially in rice stem and leaf. Copper K-edge XANES results indicated that a much higher proportion of Cu (I) species existed in rice grain than husk and leaf, which was further confirmed by soft X-ray scanning transmission microscopy results. Sulfur increased the proportion of Cu (I) species in rice grain, husk and leaf, suggesting the inducing of Cu (II) reduction in rice tissues by S fertilization. These results suggested that fertilization of S in paddy soils increased the accumulation of Cu in rice grain, possibly due to the reduction of Cu (II) to Cu (I) by enhancing glutathione synthesis and increasing the translocation of Cu from shoot to grain. Copyright © 2017 Elsevier Ltd. All rights reserved.

  6. The deposition of radioiodine onto rice plant from atmosphere

    International Nuclear Information System (INIS)

    Uchida, Shigeo; Muramatsu, Yasuyuki; Yoshida, Satoshi; Sumiya, Misako; Ohmomo, Yoichiro.

    1994-01-01

    Radiation dose estimations are usually made with the aid of assessment models in which model parameters such as the transfer factors of radionuclides from one environmental compartment to another are involved. In simple models the parameters are often described as the concentration ratio of a radionuclide between two compartments, when the system is under equilibrium condition. In this paper, the authors introduce the values of the parameters of radioiodine obtained by tracer experiments. Laboratory experiments on the transfer parameters of radionuclides from the atmosphere to rice plant were carried out in the atmosphere-to-crops system (deposition pathway). It is known that the typical chemical species of gaseous iodine in the atmosphere are elemental iodine (I 2 ) and methyliodide (CH 3 I). The deposition characteristics of both chemical species of gaseous iodine to rice grains were obtained. Mass normalized deposition velocity (V D ) and grain number normalized deposition velocity (V S ) of gaseous elemental iodine (I 2 ) and also methyliodide (CH 3 I) on unhulled rice were measured. Both V D and V S of methyliodide were about one percent of those of elemental iodine. Distribution pattern of methyliodide between unhulled rice and brown rice was significantly lower than that of elemental one. For wet deposition, we investigated the retention of radioiodines (iodide [I - ] and iodate [IO 3 - ] on rice grains and their translocation from the surface of the grains to brown rice. Though the ears were dipped into the solution containing 125 I - or 125 IO 3 - more than 15 min., both iodine species in the solutions were hardly taken up to the rice grains. The transfer rates of iodide and iodate, which are defined as 'the amount of the iodine in brown rice' divided by 'the amount of iodide in unhulled rice' were about 0.015 and 0.04, respectively. The rates were not changed with time after the radioiodine application. (author)

  7. Soil-to-plant transfer factors of trace and major elements in rice plant (Oryza Sativa) at Kalpakkam

    International Nuclear Information System (INIS)

    Sreedevi, K.R.; Rajaram, S.; Thulasi Brindha, J.; Venkataraman, S.; Hegde, A.G.

    2011-01-01

    The objective of this study was to evaluate the distribution of trace and major elements in rice plant (Oryza Sativa) which is the staple diet of the public at Kalpakkam. The transfer factor from soil to various parts of plant was also studied. Trace and major elements such as Fe, Mn, Zn, Co, Cu, Ni, Cr, Cd, Pb , Sr, K, Ca and Mg were selected based on their role in nutrition and also to study the behaviour of their radioactive counterparts. Among the trace elements Fe concentration was observed to be maximum in soil, the mean value of which was 18394 mg/kg dry wt. Cadmium concentration was observed to be minimum with the mean value of 2 mg/kg dry wt. The maximum and minimum concentration observed in the rice grain were due to Zn and Cd and the values were found to be 9 and 0.044 mg/kg dry wt, respectively. In the stem and leaves part the maximum and minimum concentration was due to Fe and Cd and the values were found to be 26.8 and 0.12 mg/kg dry wt. Similarly in the root part Fe and Cd concentrations were found to be maximum and minimum, respectively. Among the different parts of the rice plant, trace elements concentration in root was maximum and in stem and leaves major elements concentration was maximum. Transfer factor from soil to plant parts was computed. In general, the transfer factor was maximum in root, followed by stem and leaves and grain for trace elements. The transfer factor computed for whole rice plant was maximum for Zn and minimum for Sr which is a significant observation from radiological point of view. (author)

  8. Understanding the molecular basis of plant growth promotional effect of Pseudomonas fluorescens on rice through protein profiling

    Directory of Open Access Journals (Sweden)

    Thiruvengadam Raguchander

    2009-12-01

    Full Text Available Abstract Background Plant Growth Promoting Rhizobacteria (PGPR, Pseudomonas fluorescens strain KH-1 was found to exhibit plant growth promotional activity in rice under both in-vitro and in-vivo conditions. But the mechanism underlying such promotional activity of P. fluorescens is not yet understood clearly. In this study, efforts were made to elucidate the molecular responses of rice plants to P. fluorescens treatment through protein profiling. Two-dimensional polyacrylamide gel electrophoresis strategy was adopted to identify the PGPR responsive proteins and the differentially expressed proteins were analyzed by mass spectrometry. Results Priming of P. fluorescens, 23 different proteins found to be differentially expressed in rice leaf sheaths and MS analysis revealed the differential expression of some important proteins namely putative p23 co-chaperone, Thioredoxin h- rice, Ribulose-bisphosphate carboxylase large chain precursor, Nucleotide diPhosphate kinase, Proteosome sub unit protein and putative glutathione S-transferase protein. Conclusion Functional analyses of the differential proteins were reported to be directly or indirectly involved in growth promotion in plants. Thus, this study confirms the primary role of PGPR strain KH-1 in rice plant growth promotion.

  9. Rivina humilis L. (Phytolaccaceae, a Newly Naturalized Plant in Taiwan

    Directory of Open Access Journals (Sweden)

    Yen-Hsueh Tseng

    2008-12-01

    Full Text Available A newly naturalized plant, Rivina humilis L., was found recently in the central part of Taiwan. This plant represents a new record of this genus and species for Taiwan. This Neotropical plant, native to the southern USA, Mexico, the Caribbean islands, and Central and South America, is described and illustrated in this report.

  10. Effects of Different Planting Times of Different Rice Cultivars on Control of the Striped Stem Borer (Chilo suppressalis (Lepidoptera: Pyralidae

    Directory of Open Access Journals (Sweden)

    T. Oskou

    2016-06-01

    Full Text Available Introduction: Rice (Oryza sativa L. is one of the world’s most important staple food crops. In Asia, it is the main item of the diet of 3.5 billion people. Rice stem borers are common insect pests in many rice growing countries. Striped stem borer (Chilo suppressalis Walker, belonging to Lepidoptera and family of Pyralidae is the most important rice pest in the Northern Iran. Stem borer larva damages rice stem and disturbs nutrient translocation from root to leaf. As the result, tillers in vegetative stage died, which is called dead heart. When larva infests generative stage, it causes empty panicle, which is called white head. Integrated pest management (IPM practices for controlling the stem borers in Iran have not been fully implemented because of limited control technologies which are available. Farmers often rely on heavily insecticide application, although many insecticide applications are not effective. Therefore, many physical and cultural practices have been suggested, including adjustment of planting time to escape the plant from heavy pest. Materials and Methods: The study was conducted in deputy of rice research institute in Amol, Mazandaran, Iran, during 2011-2012. The experiment was arranged in split plot design with planting time as main plot and cultivar as subplot and was replicated three times. Three planting times tested were the first planting time i.e. 15 days before farmers’ planting time, the second planting time (simultaneously with farmers’ planting time, and the third planting time (15days after farmers’ planting time. Six rice cultivars tested, representing three types of rice cultivar, Tarom and Kohsar (early maturity cultivars, Shirodi and Fajr (medium maturity cultivars, Neda and Nemat (late maturity cultivar. Rice seedlings were transplanted at 25 cm planting distance in a 3 m x 9 m plot size. Weeding and fertilization were done as recommended. No insecticide was applied. Dead hearts and white heads were

  11. Engineered Dwarf Male-Sterile Rice: A Promising Genetic Tool for Facilitating Recurrent Selection in Rice.

    Science.gov (United States)

    Ansari, Afsana; Wang, Chunlian; Wang, Jian; Wang, Fujun; Liu, Piqing; Gao, Ying; Tang, Yongchao; Zhao, Kaijun

    2017-01-01

    Rice is a crop feeding half of the world's population. With the continuous raise of yield potential via genetic improvement, rice breeding has entered an era where multiple genes conferring complex traits must be efficiently manipulated to increase rice yield further. Recurrent selection is a sound strategy for manipulating multiple genes and it has been successfully performed in allogamous crops. However, the difficulties in emasculation and hand pollination had obstructed efficient use of recurrent selection in autogamous rice. Here, we report development of the dwarf male-sterile rice that can facilitate recurrent selection in rice breeding. We adopted RNAi technology to synergistically regulate rice plant height and male fertility to create the dwarf male-sterile rice. The RNAi construct pTCK-EGGE, targeting the OsGA20ox2 and OsEAT1 genes, was constructed and used to transform rice via Agrobacterium -mediated transformation. The transgenic T0 plants showing largely reduced plant height and complete male-sterile phenotypes were designated as the dwarf male-sterile plants. Progenies of the dwarf male-sterile plants were obtained by pollinating them with pollens from the wild-type. In the T1 and T2 populations, half of the plants were still dwarf male-sterile; the other half displayed normal plant height and male fertility which were designated as tall and male-fertile plants. The tall and male-fertile plants are transgene-free and can be self-pollinated to generate new varieties. Since emasculation and hand pollination for dwarf male-sterile rice plants is no longer needed, the dwarf male-sterile rice can be used to perform recurrent selection in rice. A dwarf male-sterile rice-based recurrent selection model has been proposed.

  12. The balance of distribution and conversion of pentachlorophenal 14C in rice plants and soil

    International Nuclear Information System (INIS)

    Weiss, U.; Scheunert, I.; Korte, F.

    1981-01-01

    Rice plants were cultivated in a climatic chamber in vessels with 7-8 kg soil which was contaminated with 14 C pentachlorophenol. The soil was flooded with water during the growth period. The test was carried out until the rice plants were ripe. All parts of the system (atmosphere, straw and ears, roots and stubble, infiltration water, soil and washing water from the roots) were then investigated for their 14 C content. It could be seen that pentachlorophenol does not belong to the so-called 'persistant' environmental chemicals. After a period of vegetation, only about 1% of the initial substance is found in the plant/soil system. Besides the volatility of the initial substance and/or decomposition products into the atmosphere, a stepwise reductive dechlorination takes place in the soil and plants and finally the residues are bonded in a specific form to soil and plants. Residues can occur in the rice grains after soil treatment of rice cultures which also are largely bonded and cannot be chemically characterized. Its toxicological significance has not been thoroughly investigated. The question of the long-term consequences of the bonded residues still needs extensive research despite the favourable conclusion that can be drawn from this study on environmental behaviour of pentachlorophenol. (orig.) [de

  13. Paddy-field contamination with 134Cs and 137Cs due to Fukushima Dai-ichi Nuclear Power Plant accident and soil-to-rice transfer coefficients

    International Nuclear Information System (INIS)

    Endo, Satoru; Kajimoto, Tsuyoshi; Shizuma, Kiyoshi

    2013-01-01

    The transfer coefficient (TF) from soil to rice plants of 134 Cs and 137 Cs in the form of radioactive deposition from the Fukushima Dai-ichi Nuclear Power Plant (FDNPP) accident in March 2011 was investigated in three rice paddy fields in Minami-Soma City. Rice crops were planted in the following May and harvested at the end of September. Soil cores of 30-cm depth were sampled from rice-planted paddy fields to measure 134 Cs and 137 Cs radioactivity at 5-cm intervals. 134 Cs and 137 Cs radioactivity was also measured in rice ears (rice with chaff), straws and roots. The rice ears were subdivided into chaff, brown rice, polished rice and rice bran, and the 134 Cs and 137 Cs radioactivity concentration of each plant part was measured to calculate the respective TF from the soil. The TF of roots was highest at 0.48 ± 0.10 in the field where the 40 K concentration in the soil core was relatively low, in comparison with TF values of 0.31 and 0.38 in other fields. Similar trends could be found for the TF of whole rice plants, excluding roots. The TF of rice ears was relatively low at 0.019–0.026. The TF of chaff, rice bran, brown rice and polished rice was estimated to be 0.049, 0.10–0.16, 0.013–0.017 and 0.005–0.013, respectively. - Highlights: ► We investigated the transfer coefficient of 134 Cs and 137 Cs from soil to rice plants in Minami-Soma City due to the Fukushima accident in 2011. ► The rice ears, straws, roots, chaff, brown rice, polished rice, rice bran and soil samples have been measured by Ge-detector. ► Transfer coefficient of chaff, rice bran, brown rice, and polished rice is estimated as 0.049, ranging from 0.10 to 0.16, 0.013 to 0.017, and 0.005 to 0.013, respectively.

  14. Recent advances in the dissection of drought-stress regulatory networks and strategies for development of drought-tolerant transgenic rice plants.

    Science.gov (United States)

    Todaka, Daisuke; Shinozaki, Kazuo; Yamaguchi-Shinozaki, Kazuko

    2015-01-01

    Advances have been made in the development of drought-tolerant transgenic plants, including cereals. Rice, one of the most important cereals, is considered to be a critical target for improving drought tolerance, as present-day rice cultivation requires large quantities of water and as drought-tolerant rice plants should be able to grow in small amounts of water. Numerous transgenic rice plants showing enhanced drought tolerance have been developed to date. Such genetically engineered plants have generally been developed using genes encoding proteins that control drought regulatory networks. These proteins include transcription factors, protein kinases, receptor-like kinases, enzymes related to osmoprotectant or plant hormone synthesis, and other regulatory or functional proteins. Of the drought-tolerant transgenic rice plants described in this review, approximately one-third show decreased plant height under non-stressed conditions or in response to abscisic acid treatment. In cereal crops, plant height is a very important agronomic trait directly affecting yield, although the improvement of lodging resistance should also be taken into consideration. Understanding the regulatory mechanisms of plant growth reduction under drought stress conditions holds promise for developing transgenic plants that produce high yields under drought stress conditions. Plant growth rates are reduced more rapidly than photosynthetic activity under drought conditions, implying that plants actively reduce growth in response to drought stress. In this review, we summarize studies on molecular regulatory networks involved in response to drought stress. In a separate section, we highlight progress in the development of transgenic drought-tolerant rice plants, with special attention paid to field trial investigations.

  15. Studies on the copper-poisoned soils. Part 2. Actual condition of the copper-poison in the soils and the rice plants

    Energy Technology Data Exchange (ETDEWEB)

    Koshiba, N.; Sano, Y.

    1968-01-01

    Copper contents of soils and rice plants in paddylands were correlated with growth. The results were as follows: available copper content in paddies was 181.8 ppm where the rice plants grew poorly, and was more than 4 times the value of the soil where rice plants grew favorably. The difference growth was obviously caused by available copper. The copper content of the rice plants showing poor growth was the same as those which grew well. Plants were poisoned by available copper of more than 100 ppm. The available copper contents were increased by drying processes of the paddyland soils distributed in the copper-poisoned area. 8 references, 6 tables.

  16. Identification of Morphological Character and Esterase Isozyme Pattern in Second-Generation Black Rice Plant Irradiated to Gamma Rays

    Science.gov (United States)

    Hartanti, R. S.; Putri, T. A. N.; Zulfa, F.; Sutarno; Suranto

    2017-04-01

    Black rice is one of the functional foods due to its high anthocyanin content. Black rice grain was irradiated by gamma rays with a dose of 200 Gy and 300 Gy. The main purpose of this irradiation is to induce mutation to the black rice plant in order to achieve the improved organism. This study was undertaken to elucidate the morphological character and esterase isozyme pattern of black rice plant after irradiated by gamma rays. There were morphological differences on leaves, stems and grains between irradiated and non irradiated black rice plant. Gamma radiation dose of 200 Gy showed the significant influence of the length of the stem, number of internodes, and length of leaves. The radiation dose of 300 Gy showed the significant influence of the decrease value of diameter of 3rd internodes, number of branches and width of leaves. Flowering time is getting faster as increasing radiation dose. At the age of 74 days after planting there are 9.15% plants of 200 Gy radiation dose that have flowered faster than normal plants. This value increased into 11.45% at the dose of radiation 300 Gy. There were differences in the esterase banding pattern between radiation dose of 200 Gy and 300 Gy than the control plants, indicated that randomly mutation has occurred.

  17. Marker-assisted backcrossing: a useful method for rice improvement.

    Science.gov (United States)

    Hasan, Muhammad Mahmudul; Rafii, Mohd Y; Ismail, Mohd R; Mahmood, Maziah; Rahim, Harun A; Alam, Md Amirul; Ashkani, Sadegh; Malek, Md Abdul; Latif, Mohammad Abdul

    2015-03-04

    The world's population is increasing very rapidly, reducing the cultivable land of rice, decreasing table water, emerging new diseases and pests, and the climate changes are major issues that must be addressed to researchers to develop sustainable crop varieties with resistance to biotic and abiotic stresses. However, recent scientific discoveries and advances particularly in genetics, genomics and crop physiology have opened up new opportunities to reduce the impact of these stresses which would have been difficult if not impossible as recently as the turn of the century. Marker assisted backcrossing (MABC) is one of the most promising approaches is the use of molecular markers to identify and select genes controlling resistance to those factors. Regarding this, MABC can contribute to develop resistant or high-yielding or quality rice varieties by incorporating a gene of interest into an elite variety which is already well adapted by the farmers. MABC is newly developed efficient tool by which using large population sizes (400 or more plants) for the backcross F 1 generations, it is possible to recover the recurrent parent genotype using only two or three backcrosses. So far, many high yielding, biotic and abiotic stresses tolerance, quality and fragrance rice varieties have been developed in rice growing countries through MABC within the shortest timeframe. Nowadays, MABC is being used widely in plant breeding programmes to develop new variety/lines especially in rice. This paper reviews recent literature on some examples of variety/ line development using MABC strategy.

  18. Physiological studies on photochemical oxidant injury in rice plants. IV. Effect of nitrogen application on endogenous abscisic acid (ABA) production and ozone injury of rice plants

    Energy Technology Data Exchange (ETDEWEB)

    Jeong, Y.H.; Ota, Y.

    1981-12-01

    In order to determine the effects of nitrogen application on ABA content of rice plants and their ozone-sensitivity, ABA production and ozone injuries were observed under different levels of nitrogen application with two Japonica and two Japonica X Indica type varieties. In all varieties, endogenous ABA content decreased with the increasing level of nitrogen applied, although total nitrogen content increased with the increasing level of nitrogen applied. Ozone injury was found with increasing level of nitrogen applied and to change depending on the varieties. Ozone injury was found to be more serious with increasing nitrogen content in Jinheung and Nongback, however it was less pronounced in Tongil and Milyang No. 23. Endogenous ABA content and ozone-sensitivity were related to the nitrogen content in the rice plants.

  19. Radiotracer experiments on the desorption of iodine from paddy soil with and without rice plants

    International Nuclear Information System (INIS)

    Muramatsu, Yasuyuki; Uchida, Shigeo; Yoshida, Satoshi

    1991-01-01

    In order to assess the behavior of radioiodine in rice fields, we have performed laboratory experiments, using 125 I tracer, on the desorption phenomena of iodine from soil during rice cultivation. Most of the 125 I added to the soil was adsorbed by the soil solid phase at the beginning of the experiment. However, the iodine started to desorb into the soil solution with the growth of rice plants. The highest desorption rate of iodine was found around the flowering period, i.e. nearly 30% of the 125 I was desorbed from Ando soil into the soil solution. In contrast to this, no particular increase in the iodine desorption was observed from the uncultivated flooded soil. It was suggested that rice plants had some influence upon iodine desorption from soil and the desorption also depended on the soil types. (author)

  20. Stimulation effects of γ-irradiation combined with colchicine on callus formation and green plant regeneration in rice anther culture

    International Nuclear Information System (INIS)

    Jin Wei; Chen Qiufang; Wang Cailian; Lu Yimei

    1999-09-01

    The ability of callus formation and green plant regeneration was very different for various rice types and varieties in rice anther culture. It was quite effective that rice anthers were irradiated with 10-40 Gy of γ-rays after 30 d incubation on induction medium and calli were treated on differentiation medium contained 10-75 mg/L of colchicine for increase of callus formation and green plant regeneration. Among these treatments, 10 Gy of γ-rats was the best for callus formation, and 20 Gy of γ-rays or 30 mg/L of colchicine was the most favourable for green plant regeneration. The simulation effect of 20 Gy of γ-irradiation combined with 30 mg/L of colchicine on green plant regeneration was much better than that of their separate use in rice anther culture

  1. Studies on Plant Population and Stand Establishment Techniques for Increasing Productivity of Rice in Dera Ismail Khan, Pakistan

    Directory of Open Access Journals (Sweden)

    Mohammad Safdar BALOCH

    2007-06-01

    Full Text Available Rice production in Pakistan is constraint by many factors pertaining to prevalent planting techniques. A research on the feasibility of new planting techniques (direct seeding on flat, transplanting on flat, direct seeding on ridges, transplanting on ridges and parachute planting in transplanted and direct wet-seeded rice was undertaken at Dera Ismail Khan region of Pakistan's North West Frontier Province during 2002 and 2003. Among the planting techniques, the best performance for the yield formation and economic evaluation was noted for transplanting on flat during both years. Chinese parachute planting technology also showed very promising results in most of the parameters. Direct seeding on ridges could not excel transplanting on flat and parachute planting during both cropping seasons. The findings concluded the feasibility of parachute planting technology along with traditional rice transplanting on flat over all other planting techniques being practiced in the area.

  2. Improved stress tolerance and productivity in transgenic rice plants constitutively expressing the Oryza sativa glutathione synthetase OsGS under paddy field conditions.

    Science.gov (United States)

    Park, Seong-Im; Kim, Young-Saeng; Kim, Jin-Ju; Mok, Ji-Eun; Kim, Yul-Ho; Park, Hyang-Mi; Kim, Il-Sup; Yoon, Ho-Sung

    2017-08-01

    Reactive oxygen species, which increase under various environmental stresses, have deleterious effects on plants. An important antioxidant, glutathione, is used to detoxify reactive oxygen species in plant cells and is mainly produced by two enzymes: gamma-glutamylcysteine synthetase (γ-ECS) and glutathione synthetase (GS). To evaluate the functional roles of the glutathione synthetase gene (OsGS) in rice, we generated four independent transgenic rice plants (TG1-TG4) that overexpressed OsGS under the control of the constitutively expressed OsCc1 promoter. When grown under natural paddy field conditions, the TG rice plants exhibited greater growth development, higher chlorophyll content, and higher GSH/GSSH ratios than control wild-type (WT) rice plants. Subsequently, the TG rice plants enhanced redox homeostasis by preventing hydroperoxide-mediated membrane damage, which improved their adaptation to environmental stresses. As a result, TG rice plants improved rice grain yield and total biomass following increases in panicle number and number of spikelets per panicle, despite differences in climate during the cultivation periods of 2014 and 2015. Overall, our results indicate that OsGS overexpression improved redox homeostasis by enhancing the glutathione pool, which resulted in greater tolerance to environmental stresses in the paddy fields. Copyright © 2017. Published by Elsevier GmbH.

  3. Use of rice seedlings to estimate uptake of radiocesium from soil to plants in Fukushima Prefecture

    International Nuclear Information System (INIS)

    Fujimura, Shigeto; Suzuki, Yasukazu; Ohno, Takeshi

    2013-01-01

    The uptake of radiocesium to plants from the soil is affected by many environmental factors, and it is difficult to determine the contribution of uptake among these factors. In addition, these environmental factors should be investigated independently for each field. The aim of this study was to develop a practical and simple method for the estimate of uptake of radiocesium from soil to plants. Rice seedlings were used to estimate the root uptake of radiocesium from seven different soils. To confirm that the seedlings were the effective indicator, the concentration of "1"3"7Cs in the seedlings was compared with that in brown rice and sunflower. The seedlings were cultivated for a week from germination in a phytotron and the concentrations of "1"3"7Cs in the seedlings above ground were determined. To obtain brown rice and sunflower, rice and sunflower were cultivated either in a pot (1/5000 a Wagner pot, 4000 cm"3) placed in a glasshouse or in a paddy field in Fukushima prefecture for two to four months. The concentration of "1"3"7Cs in the rice seedlings ranged from 150 to 1900 Bq kg"-"1, and that in brown rice and sunflower ranged from 2 to 880 Bq kg"-"1 and from 580 to 3900 Bq kg"-"1, respectively. The Spearman's rank correlation coefficient between the measured concentration of "1"3"7Cs in rice seedlings and the measured concentration of "1"3"7Cs in brown rice and sunflower was 1.0 (p < 0.001 and p = 0.09, respectively). This suggests that the use of rice seedlings in this experiment over a period of two weeks provides an effective indicator for the uptake of "1"3"7Cs from soil to plants over a longer period of time. (author)

  4. Use of rice seedlings to estimate uptake of radiocesium from soil to plants in Fukushima Prefecture

    International Nuclear Information System (INIS)

    Fujimura, Shigeto; Suzuki, Yasukazu; Ohno, Takeshi

    2012-01-01

    The uptake of radiocesium to plants from the soil is affected by many environmental factors, and it is difficult to determine the contribution of uptake among these factors. In addition, these environmental factors should be investigated independently for each field. The aim of this study was to develop a practical and simple method for the estimate of uptake of radiocesium from soil to plants. Rice seedlings were used to estimate the root uptake of radiocesium from seven different soils. To confirm that the seedlings were the effective indicator, the concentration of 137 Cs in the seedlings was compared with that in brown rice and sunflower. The seedlings were cultivated for a week from germination in a phytotron and the concentrations of 137 Cs in the seedlings above ground were determined. To obtain brown rice and sunflower, rice and sunflower were cultivated either in a pot (1/5000 a Wagner pot, 4000 cm 3 ) placed in a glasshouse or in a paddy field in Fukushima prefecture for two to four months. The concentration of 137 Cs in the rice seedlings ranged from 150 to 1900 Bq kg -1 , and that in brown rice and sunflower ranged from 2 to 880 Bq kg -1 and from 580 to 3900 Bq kg -1 , respectively. The Spearman's rank correlation coefficient between the measured concentration of 137 Cs in rice seedlings and the measured concentration of 137 Cs in brown rice and sunflower was 1.0 (p < 0.001 and p = 0.09, respectively). This suggests that the use of rice seedlings in this experiment over a period of two weeks provides an effective indicator for the uptake of 137 Cs from soil to plants over a longer period of time. (author)

  5. Mapping paddy rice planting area in wheat-rice double-cropped areas through integration of Landsat-8 OLI, MODIS, and PALSAR images.

    Science.gov (United States)

    Wang, Jie; Xiao, Xiangming; Qin, Yuanwei; Dong, Jinwei; Zhang, Geli; Kou, Weili; Jin, Cui; Zhou, Yuting; Zhang, Yao

    2015-05-12

    As farmland systems vary over space and time (season and year), accurate and updated maps of paddy rice are needed for studies of food security and environmental problems. We selected a wheat-rice double-cropped area from fragmented landscapes along the rural-urban complex (Jiangsu Province, China) and explored the potential utility of integrating time series optical images (Landsat-8, MODIS) and radar images (PALSAR) in mapping paddy rice planting areas. We first identified several main types of non-cropland land cover and then identified paddy rice fields by selecting pixels that were inundated only during paddy rice flooding periods. These key temporal windows were determined based on MODIS Land Surface Temperature and vegetation indices. The resultant paddy rice map was evaluated using regions of interest (ROIs) drawn from multiple high-resolution images, Google Earth, and in-situ cropland photos. The estimated overall accuracy and Kappa coefficient were 89.8% and 0.79, respectively. In comparison with the National Land Cover Data (China) from 2010, the resultant map better detected changes in the paddy rice fields and revealed more details about their distribution. These results demonstrate the efficacy of using images from multiple sources to generate paddy rice maps for two-crop rotation systems.

  6. Residues and accumulation of molinate in rice crops and aquatic weeds in the MUDA rice agroecosystem

    International Nuclear Information System (INIS)

    Nashriyah Mat; Sabri Junoh; Nuriati Nurdin; Ramli Ishak

    2002-01-01

    Plant and soil residue levels and its accumulation in rice crops and rice aquatic weed plants were studied. Molinate residue levels in rice, weeds and soil were not significantly different between the recycled and the non-recycled area, even though they were higher in the non-recycled area. In the rice plant, the residue level at 10 DAT (days after treatment) was significantly higher than 30 DAT in the recycled area. In rice aquatic weed plants, the residue level was significantly higher at 10 DAT as compared to 30 DAT in the non-recycled area. Molinate residue levels in soil at 10 DAT and 30 DAT were similar. Molinate accumulated (ratio of molinate concentration in plant over soil) more in the rice crop as compared to rice aquatic weeds at 10 DAT, in both the recycled and the non-recycled areas. (Author)

  7. Development of Selectable Marker-Free Transgenic Rice Plants with Enhanced Seed Tocopherol Content through FLP/FRT-Mediated Spontaneous Auto-Excision.

    Science.gov (United States)

    Woo, Hee-Jong; Qin, Yang; Park, Soo-Yun; Park, Soon Ki; Cho, Yong-Gu; Shin, Kong-Sik; Lim, Myung-Ho; Cho, Hyun-Suk

    2015-01-01

    Development of marker-free transgenic plants is a technical alternative for avoiding concerns about the safety of selectable marker genes used in genetically modified (GM) crops. Here, we describe the construction of a spontaneous self-excision binary vector using an oxidative stress-inducible modified FLP/FRT system and its successful application to produce marker-free transgenic rice plants with enhanced seed tocopherol content. To generate selectable marker-free transgenic rice plants, we constructed a binary vector using the hpt selectable marker gene and the rice codon-optimized FLP (mFLP) gene under the control of an oxidative stress-inducible promoter between two FRT sites, along with multiple cloning sites for convenient cloning of genes of interest. Using this pCMF binary vector with the NtTC gene, marker-free T1 transgenic rice plants expressing NtTC were produced by Agrobacterium-mediated stable transformation using hygromycin as a selective agent, followed by segregation of selectable marker genes. Furthermore, α-, γ-, and total tocopherol levels were significantly increased in seeds of the marker-free transgenic TC line compared with those of wild-type plants. Thus, this spontaneous auto-excision system, incorporating an oxidative stress-inducible mFLP/FRT system to eliminate the selectable marker gene, can be easily adopted and used to efficiently generate marker-free transgenic rice plants. Moreover, nutritional enhancement of rice seeds through elevation of tocopherol content coupled with this marker-free strategy may improve human health and public acceptance of GM rice.

  8. Comparison of Rice Direct Seeding Methods (Mechanical and Manual with Transplanting Method

    Directory of Open Access Journals (Sweden)

    A Eyvani

    2014-04-01

    Full Text Available The main method of rice planting in Iran is transplanting. Due to poor mechanization of rice production, this method is laborious and costly. The other method is direct seeding in wet lands which is performed in the one third of rice cultivation area of the world. The most important problem in this method is high labor requirement of weed control. In order to compare the different rice planting methods (direct drilling, transplanting, and seed broadcasting a manually operated rice direct seeder (drum seeder was designed and fabricated. The research was conducted using a randomized complete block design with three treatments and three replications. Required draft force, field efficiency, effective field capacity, yield, and yield components were measured and the treatments were compared economically. Results showed that there were significant differences among the treatments from the view point of rice yield at the confidence level of 95% i.e. the transplanting method had the maximum yield. A higher rice yield was obtained from the direct seeder compared to the manual broadcasting method but, the difference between these two methods for crop yield was not significant even at the confidence level of the 95%. The coefficient of variation of seed distribution with direct seeding was more than 20%. The labor and time requirements per hectare reduced to 7 and 20 times, respectively when comparing the newly designed direct seeder with the transplanting method. The direct seeding method had the highest benefit to cost ratio in spite of its lower yield. Therefore, this method could be recommended in the rice growing regions.

  9. ACC deaminase and IAA producing growth promoting bacteria from the rhizosphere soil of tropical rice plants.

    Science.gov (United States)

    Bal, Himadri Bhusan; Das, Subhasis; Dangar, Tushar K; Adhya, Tapan K

    2013-12-01

    Beneficial plant-associated bacteria play a key role in supporting and/or promoting plant growth and health. Plant growth promoting bacteria present in the rhizosphere of crop plants can directly affect plant metabolism or modulate phytohormone production or degradation. We isolated 355 bacteria from the rhizosphere of rice plants grown in the farmers' fields in the coastal rice field soil from five different locations of the Ganjam district of Odisha, India. Six bacteria producing both ACC deaminase (ranging from 603.94 to 1350.02 nmol α-ketobutyrate mg(-1)  h(-1) ) and indole acetic acid (IAA; ranging from 10.54 to 37.65 μM ml(-1) ) in pure cultures were further identified using polyphasic taxonomy including BIOLOG((R)) , FAME analysis and the 16S rRNA gene sequencing. Phylogenetic analyses of the isolates resulted into five major clusters to include members of the genera Bacillus, Microbacterium, Methylophaga, Agromyces, and Paenibacillus. Seed inoculation of rice (cv. Naveen) by the six individual PGPR isolates had a considerable impact on different growth parameters including root elongation that was positively correlated with ACC deaminase activity and IAA production. The cultures also had other plant growth attributes including ammonia production and at least two isolates produced siderophores. Study indicates that presence of diverse rhizobacteria with effective growth-promoting traits, in the rice rhizosphere, may be exploited for a sustainable crop management under field conditions. © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  10. The role of phosphorus sources in the growth of lowland rice plant

    International Nuclear Information System (INIS)

    Sisworo, Widjang Herry

    1975-01-01

    The role of phosphorus sources in the growth of lowland rice plant was studied using P 32 -labelled superphosphate. The experiment was carried out in the glass house. Three high yielding rice varieties used in the experiment were PB 5, IR 22 and Pelita I/1. Results obtained from the experiment showed that, during early growth, seedlings in the nursery did not require any phosphorus from outside. The phosphorus needed was apparently supplied by the seeds themselves. After 10 days seedlings started using phosphorus from outside the plants. Phosphorus in the plants derived from fertilizer reached 5-12% at 16 days old and 25-40% at transplanting time depending on the varieties. Higher response to phosphorus application in the nursery was given by Pelita I/1, the phosphorus in the plants derived from fertilizer was 40% at transplanting time. The phosphorus requirement was mostly supplied by the application of phosphorus fertilizer till 20 days after transplanting but after 40 days soil-phosphorus became the main source for the plants. (author)

  11. Plant growth enhancing effects by a siderophore-producing endophytic streptomycete isolated from a Thai jasmine rice plant (Oryza sativa L. cv. KDML105).

    Science.gov (United States)

    Rungin, Siriwan; Indananda, Chantra; Suttiviriya, Pavinee; Kruasuwan, Worarat; Jaemsaeng, Ratchaniwan; Thamchaipenet, Arinthip

    2012-10-01

    An endophytic Streptomyces sp. GMKU 3100 isolated from roots of a Thai jasmine rice plant (Oryza sativa L. cv. KDML105) showed the highest siderophore production on CAS agar while phosphate solubilization and IAA production were not detected. A mutant of Streptomyces sp. GMKU 3100 deficient in just one of the plant growth promoting traits, siderophore production, was generated by inactivation of a desD-like gene encoding a key enzyme controlling the final step of siderophore biosynthesis. Pot culture experiments revealed that rice and mungbean plants inoculated with the wild type gave the best enhancement of plant growth and significantly increased root and shoot biomass and lengths compared with untreated controls and siderophore-deficient mutant treatments. Application of the wild type in the presence or absence of ferric citrate significantly promoted plant growth of both plants. The siderophore-deficient mutant clearly showed the effect of this important trait involved in plant-microbe interaction in enhancement of growth in rice and mungbean plants supplied with sequestered iron. Our results highlight the value of a substantial understanding of the relationship of the plant growth promoting properties of endophytic actinomycetes to the plants. Endophytic actinomycetes, therefore, can be applied as potentially safe and environmentally friendly biofertilizers in agriculture.

  12. A technique system for the measurement, reconstruction and character extraction of rice plant architecture.

    Directory of Open Access Journals (Sweden)

    Xumeng Li

    Full Text Available This study developed a technique system for the measurement, reconstruction, and trait extraction of rice canopy architectures, which have challenged functional-structural plant modeling for decades and have become the foundation of the design of ideo-plant architectures. The system uses the location-separation-measurement method (LSMM for the collection of data on the canopy architecture and the analytic geometry method for the reconstruction and visualization of the three-dimensional (3D digital architecture of the rice plant. It also uses the virtual clipping method for extracting the key traits of the canopy architecture such as the leaf area, inclination, and azimuth distribution in spatial coordinates. To establish the technique system, we developed (i simple tools to measure the spatial position of the stem axis and azimuth of the leaf midrib and to capture images of tillers and leaves; (ii computer software programs for extracting data on stem diameter, leaf nodes, and leaf midrib curves from the tiller images and data on leaf length, width, and shape from the leaf images; (iii a database of digital architectures that stores the measured data and facilitates the reconstruction of the 3D visual architecture and the extraction of architectural traits; and (iv computation algorithms for virtual clipping to stratify the rice canopy, to extend the stratified surface from the horizontal plane to a general curved surface (including a cylindrical surface, and to implement in silico. Each component of the technique system was quantitatively validated and visually compared to images, and the sensitivity of the virtual clipping algorithms was analyzed. This technique is inexpensive and accurate and provides high throughput for the measurement, reconstruction, and trait extraction of rice canopy architectures. The technique provides a more practical method of data collection to serve functional-structural plant models of rice and for the

  13. Investigation of gold nanoparticles uptake and their tissue level distribution in rice plants by laser ablation-inductively coupled-mass spectrometry

    International Nuclear Information System (INIS)

    Koelmel, Jeremy; Leland, Thomas; Wang, Huanhua; Amarasiriwardena, Dulasiri; Xing, Baoshan

    2013-01-01

    The tissue level uptake and spatial distribution of gold nanoparticles (AuNPs) in rice (Oryza sativa L.) roots and shoots under hydroponic conditions was investigated using laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS). Rice plants were hydroponically exposed to positively, neutrally, and negatively charged AuNPs [AuNP1(+), AuNP2(0), AuNP3(−)] with a core diameter of 2 nm. Plants were exposed to AuNPs having 1.6 mg Au/L for 5 days or 0.14 mg Au/L for 3 months to elucidate how the surface charges of the nanoparticles affects their uptake into living plant tissues. The results demonstrate that terminal functional groups greatly affected the AuNP uptake into plant tissues. Au concentration determined by LA-ICP-MS in 5 day treated rice roots followed this order: AuNP1(+) > AuNP2(0) > AuNP3(−) but this order was reversed for rice shoots, indicating preferential translocation of AuNP3(−). Bioimages revealed distributions of mesophyll and vascular AuNP dependent on organ or AuNP concentration. Highlights: ► LA-ICP-MS technique was effectively used to quantify engineered AuNP in rice plant. ► Uptake and translocation of AuNPs are evident in rice roots and shoots. ► Organ level distribution of AuNPs is affected by their surface charges. ► Bioimaging of AuNP distribution in rice tissues by LA-ICP-MS was demonstrated. -- The tissue level uptake and spatial distribution of engineered gold nanoparticles (AuNP) by rice plants was demonstrated by LA-ICP-MS bioimaging

  14. Serobactins-mediated iron acquisition systems optimize competitive fitness of Herbaspirillum seropedicae inside rice plants.

    Science.gov (United States)

    Rosconi, Federico; Trovero, María F; de Souza, Emanuel M; Fabiano, Elena

    2016-09-01

    Herbaspirillum seropedicae Z67 is a diazotrophic endophyte able to colonize the interior of many economically relevant crops such as rice, wheat, corn and sorghum. Under iron-deficient conditions, this organism secretes serobactins, a suite of lipopetide siderophores. The role of siderophores in the interaction between endophytes and their plant hosts are not well understood. In this work, we aimed to determine the importance of serobactins-mediated iron acquisition systems in the interaction of H. seropedicae with rice plants. First we provide evidence, by using a combination of genome analysis, proteomic and genetic studies, that the Hsero_2345 gene encodes a TonB-dependent receptor involved in iron-serobactin complex internalization when iron bioavailability is low. Our results show that survival of the Hsero_2345 mutant inside rice plants was not significantly different from that of the wild-type strain. However, when plants were co-inoculated at equal ratios with the wild-type strain and with a double mutant defective in serobactins synthesis and internalization, recovery of mutant was significantly impaired after 8 days post-inoculation. These results demonstrate that serobactins-mediated iron acquisition contributes to competitive fitness of H. seropedicae inside host plants. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

  15. Transgenic rice plants expressing a Bacillus subtilis protoporphyrinogen oxidase gene are resistant to diphenyl ether herbicide oxyfluorfen.

    Science.gov (United States)

    Lee, H J; Lee, S B; Chung, J S; Han, S U; Han, O; Guh, J O; Jeon, J S; An, G; Back, K

    2000-06-01

    Protoporphyrinogen oxidase (Protox), the penultimate step enzyme of the branch point for the biosynthetic pathway of Chl and hemes, is the target site of action of diphenyl ether (DPE) herbicides. However, Bacillus subtilis Protox is known to be resistant to the herbicides. In order to develop the herbicide-resistant plants, the transgenic rice plants were generated via expression of B. subtilis Protox gene under ubiquitin promoter targeted to the cytoplasm or to the plastid using Agrobacterium-mediated gene transformation. The integration and expression of the transgene were investigated at T0 generation by DNA and RNA blots. Most transgenic rice plants revealed one copy transgene insertion into the rice genome, but some with 3 copies. The expression levels of B. subtilis Protox mRNA appeared to correlate with the copy number. Furthermore, the plastidal transgenic lines exhibited much higher expression of the Protox mRNA than the cytoplasmic transgenic lines. The transgenic plants expressing the B. subtilis Protox gene at T0 generation were found to be resistant to oxyfluorfen when judged by cellular damage with respect to cellular leakage, Chl loss, and lipid peroxidation. The transgenic rice plants targeted to the plastid exhibited higher resistance to the herbicide than the transgenic plants targeted to the cytoplasm. In addition, possible resistance mechanisms in the transgenic plants to DPE herbicides are discussed.

  16. Effect of increased plant density and fertilizer dose on the yield of rice variety IR-6

    International Nuclear Information System (INIS)

    Amin, M.; Khan, M.A.; Khan, E.A.; Ramazan, M.

    2004-01-01

    An experiment to evaluate the effect of increased plant density and fertilizer dose on yield of rice variety IR-6 was conducted at the farm of Faculty of Agriculture, Gomal University Dera Ismail Khan. Increase plant density significantly increase number of panicles per square meter, sterility and straw yield while increased fertilizer dose of NPK increase plant height, sterility, normal kernels, and 1000 grain weight. Interaction of increased plant density and fertilizer dose was found to be non significant except sterility percentage and straw yield. However efforts are required for increasing yield per unit area of rice. (author)

  17. Regulation of reactive oxygen and nitrogen species by salicylic acid in rice plants under salinity stress conditions

    Science.gov (United States)

    Mun, Bong-Gyu; Khan, Abdul Latif; Waqas, Muhammad; Kim, Hyun-Ho; Shahzad, Raheem; Imran, Muhammad

    2018-01-01

    This study investigated the regulatory role of exogenous salicylic acid (SA) in rice and its effects on toxic reactive oxygen and nitrogen species during short-term salinity stress. SA application (0.5 and 1.0 mM) during salinity-induced stress (100 mM NaCl) resulted in significantly longer shoot length and higher chlorophyll and biomass accumulation than with salinity stress alone. NaCl-induced reactive oxygen species production led to increased levels of lipid peroxidation in rice plants, which were significantly reduced following SA application. A similar finding was observed for superoxide dismutase; however, catalase (CAT) and ascorbate peroxidase (APX) were significantly reduced in rice plants treated with SA and NaCl alone and in combination. The relative mRNA expression of OsCATA and OsAPX1 was lower in rice plants during SA stress. Regarding nitrogenous species, S-nitrosothiol (SNO) was significantly reduced initially (one day after treatment [DAT]) but then increased in plants subjected to single or combined stress conditions. Genes related to SNO biosynthesis, S-nitrosoglutathione reductase (GSNOR1), NO synthase-like activity (NOA), and nitrite reductase (NIR) were also assessed. The mRNA expression of GSNOR1 was increased relative to that of the control, whereas OsNOA was expressed at higher levels in plants treated with SA and NaCl alone relative to the control. The mRNA expression of OsNR was decreased in plants subjected to single or combination treatment, except at 2 DAT, compared to the control. In conclusion, the current findings suggest that SA can regulate the generation of NaCl-induced oxygen and nitrogen reactive species in rice plants. PMID:29558477

  18. Silicon treatment to rice (oryza sativa l. cv 'gopumbyeo') plants during different growth periods and its effects on growth and grain yield

    International Nuclear Information System (INIS)

    Kim, Y.H.; Waqas, M.; Kamran, M.

    2012-01-01

    Silicon (Si) has been considered a beneficial element for plant growth. We have assessed the effects of Si application on rice (Oryza sativa L.) growth and its grain yield at field level. For this, we performed two experiments. In experiment 1, we applied Si of three different concentrations (liquid Si-10, 25 and 36%) to the seedbed of rice before transplantation into paddy field. The results of this experiment showed that Si application to rice seedbeds did not affected the rice plant height and shoot fresh weight but its application significantly increased the pushing resistance of rice plants from 12.2-16.7% as compared with water applied control plants. The lodging index of Si treated rice plants significantly decreased (13.7% on LS-25) as compared with control. Similarly, Si treated plants had significantly higher yield. Upon Si treatment (LS-36), the grain yield per 10 acre and panicles per plant were 15.1% and 6. 3% higher than the water treated control plants respectively. The best concentration (LS-36%) revealed in the first experiment was foliar applied at 10 days before heading stage, initial tilling stage and panicle initiation stage to the rice leaves and we observed that shoot biomass was not significantly different between control and Si treated plants. However, significantly higher pushing resistance (10.5%-13.8%) and plant height (12.2%-16.7%) were observed while lower lodging index (7.6-7.8%) was recorded for Si treated plants as compared to control plants. Similarly, Si application increased the number of panicles per plant as well as the grain yield per 10 acre as compared to control. In conclusion, the Si application can significantly regulate plant growth and yield if applied at proper time with feasible concentration. (author)

  19. Transgene Flow from Glufosinate-Resistant Rice to Improved and Weedy Rice in China

    Directory of Open Access Journals (Sweden)

    Yong-liang LU

    2014-09-01

    Full Text Available The development of transgenic rice with novel traits in China can increase rice productivity, but transgene flow to improved or weedy rice has become a major concern. We aimed to evaluate the potential maximum frequencies of transgene flow from glufosinate-resistant rice to improved rice cultivars and weedy rice. Treatments were arranged in randomized complete blocks with three replicates. Experiments were conducted between 2009 and 2010 at the Center for Environmental Safety Supervision and Inspection for Genetically Modified Plants, China National Rice Research Institute, Hangzhou, China. Glufosinate-resistant japonica rice 99-1 was the pollen donor. The pollen recipients were two inbred japonica rice (Chunjiang 016 and Xiushui 09, two inbred indica rice (Zhongzu 14 and Zhongzao 22, two indica hybrid rice (Zhongzheyou 1 and Guodao 1, and one weedy indica rice (Taizhou weedy rice. The offspring of recipients were planted in the field and sprayed with a commercial dose of glufosinate. Leaf tissues of survivors were analyzed by polymerase chain reaction to detect the presence of the transgene. The frequency of gene flow ranged from 0 to 0.488%. In 2009, the order of gene flow frequency was as follows: weedy rice > Chunjiang 016 > Xiushui 09 and Zhongzu 14 > Guodao 1, Zhongzheyou 1 and Zhongzao 22. Gene flow frequencies were generally higher in 2009 than in 2010, but did not differ significantly among rice materials. Gene flow frequency was the highest in weedy rice followed by the inbred japonica rice. The risk of gene flow differed significantly between years and year-to-year variance could mask risk differences among pollen recipients. Gene flow was generally lesser in taller pollen recipients than in shorter ones, but plant height only accounted for about 30% of variation in gene flow. When flowering synchrony was maximized, as in this study, low frequencies of gene flow occurred from herbicide-resistant japonica rice to other cultivars and

  20. Plant Growth Promotion and Suppression of Bacterial Leaf Blight in Rice by Inoculated Bacteria.

    Directory of Open Access Journals (Sweden)

    Sumera Yasmin

    Full Text Available The present study was conducted to evaluate the potential of rice rhizosphere associated antagonistic bacteria for growth promotion and disease suppression of bacterial leaf blight (BLB. A total of 811 rhizospheric bacteria were isolated and screened against 3 prevalent strains of BLB pathogen Xanthomonas oryzae pv. oryzae (Xoo of which five antagonistic bacteria, i.e., Pseudomonas spp. E227, E233, Rh323, Serratia sp. Rh269 and Bacillus sp. Rh219 showed antagonistic potential (zone of inhibition 1-19 mm. Production of siderophores was found to be the common biocontrol determinant and all the strains solubilized inorganic phosphate (82-116 μg mL-1 and produced indole acetic acid (0.48-1.85 mg L-1 in vitro. All antagonistic bacteria were non-pathogenic to rice, and their co-inoculation significantly improved plant health in terms of reduced diseased leaf area (80%, improved shoot length (31%, root length (41% and plant dry weight (60% as compared to infected control plants. Furthermore, under pathogen pressure, bacterial inoculation resulted in increased activity of defense related enzymes including phenylalanine ammonia-lyase and polyphenol oxidase, along with 86% increase in peroxidase and 53% increase in catalase enzyme activities in plants inoculated with Pseudomonas sp. Rh323 as well as co-inoculated plants. Bacterial strains showed good colonization potential in the rice rhizosphere up to 21 days after seed inoculation. Application of bacterial consortia in the field resulted in an increase of 31% in grain yield and 10% in straw yield over non-inoculated plots. Although, yield increase was statistically non-significant but was accomplished with overall saving of 20% chemical fertilizers. The study showed that Pseudomonas sp. Rh323 can be used to develop dual-purpose inoculum which can serve not only to suppress BLB but also to promote plant growth in rice.

  1. Development of Selectable Marker-Free Transgenic Rice Plants with Enhanced Seed Tocopherol Content through FLP/FRT-Mediated Spontaneous Auto-Excision.

    Directory of Open Access Journals (Sweden)

    Hee-Jong Woo

    Full Text Available Development of marker-free transgenic plants is a technical alternative for avoiding concerns about the safety of selectable marker genes used in genetically modified (GM crops. Here, we describe the construction of a spontaneous self-excision binary vector using an oxidative stress-inducible modified FLP/FRT system and its successful application to produce marker-free transgenic rice plants with enhanced seed tocopherol content. To generate selectable marker-free transgenic rice plants, we constructed a binary vector using the hpt selectable marker gene and the rice codon-optimized FLP (mFLP gene under the control of an oxidative stress-inducible promoter between two FRT sites, along with multiple cloning sites for convenient cloning of genes of interest. Using this pCMF binary vector with the NtTC gene, marker-free T1 transgenic rice plants expressing NtTC were produced by Agrobacterium-mediated stable transformation using hygromycin as a selective agent, followed by segregation of selectable marker genes. Furthermore, α-, γ-, and total tocopherol levels were significantly increased in seeds of the marker-free transgenic TC line compared with those of wild-type plants. Thus, this spontaneous auto-excision system, incorporating an oxidative stress-inducible mFLP/FRT system to eliminate the selectable marker gene, can be easily adopted and used to efficiently generate marker-free transgenic rice plants. Moreover, nutritional enhancement of rice seeds through elevation of tocopherol content coupled with this marker-free strategy may improve human health and public acceptance of GM rice.

  2. Comparative Proteomic Analysis of Susceptible and Resistant Rice Plants during Early Infestation by Small Brown Planthopper

    Directory of Open Access Journals (Sweden)

    Yan Dong

    2017-10-01

    Full Text Available The small brown planthopper (Laodelphax striatellus Fallén, Homoptera, Delphacidae-SBPH is one of the major destructive pests of rice (Oryza sativa L.. Understanding on how rice responds to SBPH infestation will contribute to developing strategies for SBPH control. However, the response of rice plant to SBPH is poorly understood. In this study, two contrasting rice genotypes, Pf9279-4 (SBPH-resistant and 02428 (SBPH-susceptible, were used for comparative analysis of protein profiles in the leaf sheath of rice plants in responses to SBPH infestation. One hundred and thirty-two protein spots that were differentially expressed between the resistant and susceptible rice lines were identified with significant intensity differences (≥2-fold, P < 0.05 at 0, 6, and 12 h after SBPH infestation. Protein expression profile analysis in the leaf sheath of SBPH-resistant and SBPH-susceptible rice lines after SBPH infestation showed that proteins induced by SBPH feeding were involved mainly in stress response, photosynthesis, protein metabolic process, carbohydrate metabolic process, energy metabolism, cell wall-related proteins, amino acid metabolism and transcriptional regulation. Gene expression analysis of 24 differentially expressed proteins (DEPs showed that more than 50% DEPs were positively correlated with their mRNA levels. Analysis of some physiological indexes mainly involved in the removal of oxygen reactive species showed that the levels of superoxide dismutase (SOD and glutathione (GSH were considerably higher in Pf9279-4 than 02428 during SBPH infestation. The catalase (CAT activity and hydroxyl radical inhibition were lower in Pf9279-4 than 02428. Analysis of enzyme activities indicates that Pf9279-4 rice plants defend against SBPH through the activation of the pathway of the salicylic acid (SA-dependent systemic acquired resistance. In conclusion, this study provides some insights into the molecular networks involved on cellular and

  3. Transmission Biology of Rice Stripe Mosaic Virus by an Efficient Insect Vector Recilia dorsalis (Hemiptera: Cicadellidae

    Directory of Open Access Journals (Sweden)

    Xin Yang

    2017-12-01

    Full Text Available Rice stripe mosaic virus (RSMV is a newly discovered species of cytorhabdovirus infecting rice plants that is transmitted by the leafhopper Recilia dorsalis. In this study, the transmission characteristics of RSMV by R. dorsalis were investigated. Under suitable growth conditions for R. dorsalis, the RSMV acquisition rate reached 71.9% in the second-generation population raised on RSMV-infected rice plants. The minimum acquisition and inoculation access periods of R. dorsalis were 3 and 30 min, respectively. The minimum and maximum latent transmission periods of RSMV in R. dorsalis were 6 and 18 d, respectively, and some R. dorsalis intermittently transmitted RSMV at 2–6 d intervals. Our findings revealed that the virus can replicate in the leafhopper body, but is likely not transovarially transmitted to offspring. These transmission characteristics will help guide the formulation of RSMV prevention and control strategies.

  4. Enhanced degradation of chlorpyrifos in rice (Oryza sativa L.) by five strains of endophytic bacteria and their plant growth promotional ability.

    Science.gov (United States)

    Feng, Fayun; Ge, Jing; Li, Yisong; He, Shuang; Zhong, Jianfeng; Liu, Xianjing; Yu, Xiangyang

    2017-10-01

    Endophytic bacteria reside in plant tissues, such as roots, stems, leaves and seeds. Most of them can stimulate plant growth or alleviate phytotoxicity of pollutants. There are handful species with dual functions stimulating plant growth and degrading pollutants have been reported. Five endophytic bacteria were isolated from chlorpyrifos (CP) treated rice plants and identified as Pseudomonas aeruginosa strain RRA, Bacillus megaterium strain RRB, Sphingobacterium siyangensis strain RSA, Stenotrophomonas pavanii strain RSB and Curtobacterium plantarum strain RSC according to morphological characteristics, physiological and biochemical tests, and 16S rDNA phylogeny. All of them possessed some plant growth promotional traits, including indole acetic acid and siderophore production, secretion of phosphate solubilization and 1-aminocyclopropane-1-carboxylate deaminase. The bacteria were marked with the green fluorescent protein (gfp) gene and successfully colonized into rice plants. All isolates were able to degrade CP in vitro and in vivo. The five isolates degraded more than 90% of CP in 24 h when the initial concentration was lower than 5 mg/L. CP degradation was significantly enhanced in the infested rice plants and rice grains. The final CP residual was reduced up to 80% in the infested rice grains compared to the controls. The results indicate that these isolates are promising bio-inoculants for the removal or detoxification of CP residues in rice plants and grains. Copyright © 2017 Elsevier Ltd. All rights reserved.

  5. Growth and Productivity of Response of Hybrid Rice to Application of Animal Manures, Plant Residues and Phosphorus

    Directory of Open Access Journals (Sweden)

    Dr. Amanullah

    2016-10-01

    Full Text Available The objective of this research was to evaluate the impact of organic sources (animal manures vs. plant residues at the rate of 10 t ha-1 each on the productivity profitability of small land rice (Oryza sativa L. grower under different levels of phosphorus (0, 30, 60 and 90 kg P ha-1 fertilization. Two separate field experiments were conducted. In experiment (1, impact of three animal manures sources (cattle, sheep & poultry manures and P levels was studied along with one control plot (no animal manure and P applied as check was investigated. In experiment (2, three plant residues sources (peach leaves, garlic residues & wheat straw and P levels was studied along with one control plot (no plant residues and P applied as check. Both the experiments were carried out on small land farmer field at District Swabi, Khyber Pakhtunkhwa Province (Northwest Pakistan during summer 2015. The results revealed that in both experiments the control plot had significantly (p≤0.05 less productivity than the average of all treated plots with organic sources and P level. The increase in P levels in both experiments (animal manure vs. plant residues had resulted in higher rice productivity (90 = 60 > 30 > 0 kg P ha-1. In the experiment under animal manures, application of poultry manure increased rice productivity as compared with sheep and cattle manures (poultry > sheep > cattle manures. In the experiment under plant residues, application of peach leaves or garlic resides had higher rice productivity over wheat straw (peach leaves = garlic residues > wheat straw. On the average, the rice grown under animal manures produced about 20% higher grain yield than the rice grown under crop residues. We concluded from this study that application of 90 kg P ha-1 along with combined application of animal manures especially poultry manure could increase rice productivity. We conclude from this study that application of 90 kg P ha-1 along with combined application of animal

  6. Growth responses of NaCl stressed rice (Oryza sativa L.) plants ...

    African Journals Online (AJOL)

    GREGORY

    2010-09-27

    Sep 27, 2010 ... Growth responses of NaCl stressed rice (Oryza sativa. L.) plants ... 2008), which is a real threat to human's food security. Existed situation may ..... content and composition of essential oil and minerals in black cumin. (Nigella ...

  7. Understanding rice plant resistance to the Brown Planthopper (Nilaparvata lugens): a proteomic approach.

    Science.gov (United States)

    Wei, Zhe; Hu, Wei; Lin, Qishan; Cheng, Xiaoyan; Tong, Mengjie; Zhu, Lili; Chen, Rongzhi; He, Guangcun

    2009-05-01

    Engineering and breeding resistant plant varieties are the most effective and environmentally friendly ways to control agricultural pests and improve crop performance. However, the mechanism of plant resistance to pests is poorly understood. Here we used a quantitative mass-spectrometry-based proteomic approach for comparative analysis of expression profiles of proteins in rice leaf sheaths in responses to infestation by the brown planthopper (Nilaparvata lugens Stål, BPH), which is a serious rice crop pest. Proteins involved in multiple pathways showed significant changes in expression in response to BPH feeding, including jasmonic acid synthesis proteins, oxidative stress response proteins, beta-glucanases, protein; kinases, clathrin protein, glycine cleavage system protein, photosynthesis proteins and aquaporins. The corresponding genes of eight important proteins were further analyzed by quantitative RT-PCR. Proteomic and transcript responses that were related to wounding, oxidative and pathogen stress overlapped considerably between BPH-resistant (carrying the resistance gene BPH15) and susceptible rice lines. In contrast, proteins and genes related to callose metabolism remained unchanged and glycine cleavage system protein was up-regulated in the BPH-resistant lines, indicating that they have an efficient and specific defense mechanism. Our results provide new information about the interaction between rice and the BPH.

  8. Chloroplast overexpression of rice caffeic acid O-methyltransferase increases melatonin production in chloroplasts via the 5-methoxytryptamine pathway in transgenic rice plants.

    Science.gov (United States)

    Choi, Geun-Hee; Lee, Hyoung Yool; Back, Kyoungwhan

    2017-08-01

    Recent analyses of the enzymatic features of various melatonin biosynthetic genes from bacteria, animals, and plants have led to the hypothesis that melatonin could be synthesized via the 5-methoxytryptamine (5-MT) pathway. 5-MT is known to be synthesized in vitro from serotonin by the enzymatic action of O-methyltransferases, including N-acetylserotonin methyltransferase (ASMT) and caffeic acid O-methyltransferase (COMT), leading to melatonin synthesis by the subsequent enzymatic reaction with serotonin N-acetyltransferase (SNAT). Here, we show that 5-MT was produced and served as a precursor for melatonin synthesis in plants. When rice seedlings were challenged with senescence treatment, 5-MT levels and melatonin production were increased in transgenic rice seedlings overexpressing the rice COMT in chloroplasts, while no such increases were observed in wild-type or transgenic seedlings overexpressing the rice COMT in the cytosol, suggesting a 5-MT transport limitation from the cytosol to chloroplasts. In contrast, cadmium treatment led to results different from those in senescence. The enhanced melatonin production was not observed in the chloroplast COMT lines relative over the cytosol COMT lines although 5-MT levels were equally induced in all genotypes upon cadmium treatment. The transgenic seedlings with enhanced melatonin in their chloroplasts exhibited improved seedling growth vs the wild type under continuous light conditions. This is the first report describing enhanced melatonin production in chloroplasts via the 5-MT pathway with the ectopic overexpression of COMT in chloroplasts in plants. © 2017 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  9. Bio-protective microbial agents from rhizosphere eco-systems trigger plant defense responses provide protection against sheath blight disease in rice (Oryza sativa L.).

    Science.gov (United States)

    Singh, Udai B; Malviya, Deepti; Wasiullah; Singh, Shailendra; Pradhan, Jatindra K; Singh, Bhanu P; Roy, Manish; Imram, Mohd; Pathak, Neelam; Baisyal, B M; Rai, Jai P; Sarma, B K; Singh, Rajiv K; Sharma, P K; Kaur, Saman Deep; Manna, M C; Sharma, Sushil K; Sharma, Arun K

    2016-11-01

    Sheath blight of rice (Oryza sativa L.) caused by Rhizoctonia solani is a major disease and attempts are being made to develop microbe based technologies for biocontrol of this pathogen. However, the mechanisms of biocontrol are not fully understood and still require indepth study in the backdrop of emerging concepts in biological systems. The present investigation was aimed at deciphering the mechanisms of biocontrol of sheath blight of rice employing Pseudomonas fluorescens and Trichoderma harzianum as model agents for biocontrol. Initially 25, 5 and 5 strains of P. fluorescens, T. viride and T. harzianum, respectively, were screened for their biocontrol potential. Out of which, six strains with higher value of percent inhibition of fungal mycelium in dual plate assay were selected. The role of P. fluorescens, T. viride and T. harzianum were investigated in induction and bioaccumulation of natural antioxidants, defence-related biomolecules and other changes in plant which lead not only to growth promotion but also protection from pathogenic stress conditions in rice. The two most promising strains, P. fluorescens PF-08 and T. harzianum UBSTH-501 selected on the basis of in planta evaluation, when applied individually or in combination, significantly enhanced the accumulation of defence-related biomolecules, enzymes and exhibited biocontrol potential against R. solani. A modified/newly developed delivery system was applied for the first time in the experiments involving inoculation of plants with both bioagents, viz. P. fluorescens PF-08 and T. harzianum UBSTH-501. Results suggested that application of P. fluorescens PF-08 and T. harzianum UBSTH-501 alone or in combination, not only helps in control of the disease but also increases plant growth along with reduction in application of toxic chemical pesticides. Copyright © 2016 Elsevier GmbH. All rights reserved.

  10. Transfer of gaseous iodine from atmosphere to rough rice, brown rice and polished rice

    International Nuclear Information System (INIS)

    Sumiya, Misako; Uchida, Shigeo; Muramatsu, Yasuyuki; Ohmomo, Yoichiro; Yamaguchi, Shuho; Obata, Hitoshi.

    1987-01-01

    Experiments were carried out in order to obtain information required for establishing transfer coefficients of gaseous iodine (I 2 ) to rough rice, brown rice and polished rice. The gaseous iodine deposited on young rice plants before the heading period was scarcely found in the rough rice harvested at the full ripe stage. The biological half life of iodine in hull, however, was much slower than that in leaves of 14 days. The translocation of iodine from leaves and stalks to rough rice was not clearly recognized. Therefore, it was deduced that iodine found in brown rice mainly should originate from that deposited on the hull. The distribution ratios of iodine between rough rice and brown rice, and between brown rice and polished rice were 100:4 and 100:30 on 100 grains basis, respectively. If average normalized deposition velocity (V d(m) ) or derived deposition velocity (V s ) are given, the transfer coefficients of gaseous iodine to rough rice (TF r ), brown rice (TF b ) and polished rice (TF p ) could be calculated. (author)

  11. Open-pit coal-mining effects on rice paddy soil composition and metal bioavailability to Oryza sativa L. plants in Cam Pha, northeastern Vietnam.

    Science.gov (United States)

    Martinez, Raul E; Marquez, J Eduardo; Hòa, Hoàng Thị Bích; Gieré, Reto

    2013-11-01

    This study quantified Cd, Pb, and Cu content, and the soil-plant transfer factors of these elements in rice paddies within Cam Pha, Quang Ninh province, northeastern Vietnam. The rice paddies are located at a distance of 2 km from the large Coc Sau open-pit coal mine. Electron microprobe analysis combined with backscattered electron imaging and energy-dispersive spectroscopy revealed a relatively high proportion of carbon particles rimmed by an iron sulfide mineral (probably pyrite) in the quartz-clay matrix of rice paddy soils at 20-30 cm depth. Bulk chemical analysis of these soils revealed the presence of Cd, Cu, and Pb at concentrations of 0.146±0.004, 23.3±0.1, and 23.5±0.1 mg/kg which exceeded calculated background concentrations of 0.006±0.004, 1.9±0.5, and 2.4±1.5 mg/kg respectively at one of the sites. Metals and metalloids in Cam Pha rice paddy soils, including As, Cd, Cr, Cu, Hg, Mn, Ni, Pb, and Zn, were found in concentrations ranging from 0.2±0.1 to 140±3 mg/kg, which were in close agreement with toxic metal contents in mine tailings and Coc Sau coal samples, suggesting mining operations as a major cause of paddy soil contamination. Native and model Oryza sativa L. rice plants were grown in the laboratory in a growth medium to which up to 1.5 mg/kg of paddy soil from Cam Pha was added to investigate the effects on plant growth. A decrease in growth by up to 60% with respect to a control sample was found for model plants, whereas a decrease of only 10% was observed for native (Nep cai hoa vang variety) rice plants. This result suggests an adaptation of native Cam Pha rice plants to toxic metals in the agricultural lands. The Cd, Cu, and Pb contents of the native rice plants from Cam Pha paddies exceeded permitted levels in foods. Cadmium and Pb were highest in the rice plant roots with concentrations of 0.84±0.02 and 7.7±0.3 mg/kg, suggesting an intake of these metals into the rice plant as shown, for example, by Cd and Pb concentrations of 0

  12. Root morphology, hydraulic conductivity and plant water relations of high-yielding rice grown under aerobic conditions.

    Science.gov (United States)

    Kato, Yoichiro; Okami, Midori

    2011-09-01

    Increasing physical water scarcity is a major constraint for irrigated rice (Oryza sativa) production. 'Aerobic rice culture' aims to maximize yield per unit water input by growing plants in aerobic soil without flooding or puddling. The objective was to determine (a) the effect of water management on root morphology and hydraulic conductance, and (b) their roles in plant-water relationships and stomatal conductance in aerobic culture. Root system development, stomatal conductance (g(s)) and leaf water potential (Ψ(leaf)) were monitored in a high-yielding rice cultivar ('Takanari') under flooded and aerobic conditions at two soil moisture levels [nearly saturated (> -10 kPa) and mildly dry (> -30 kPa)] over 2 years. In an ancillary pot experiment, whole-plant hydraulic conductivity (soil-leaf hydraulic conductance; K(pa)) was measured under flooded and aerobic conditions. Adventitious root emergence and lateral root proliferation were restricted even under nearly saturated conditions, resulting in a 72-85 % reduction in total root length under aerobic culture conditions. Because of their reduced rooting size, plants grown under aerobic conditions tended to have lower K(pa) than plants grown under flooded conditions. Ψ(leaf) was always significantly lower in aerobic culture than in flooded culture, while g(s) was unchanged when the soil moisture was at around field capacity. g(s) was inevitably reduced when the soil water potential at 20-cm depth reached -20 kPa. Unstable performance of rice in water-saving cultivations is often associated with reduction in Ψ(leaf). Ψ(leaf) may reduce even if K(pa) is not significantly changed, but the lower Ψ(leaf) would certainly occur in case K(pa) reduces as a result of lower water-uptake capacity under aerobic conditions. Rice performance in aerobic culture might be improved through genetic manipulation that promotes lateral root branching and rhizogenesis as well as deep rooting.

  13. Knocking down mitochondrial iron transporter (MIT) reprograms primary and secondary metabolism in rice plants.

    Science.gov (United States)

    Vigani, Gianpiero; Bashir, Khurram; Ishimaru, Yasuhiro; Lehmann, Martin; Casiraghi, Fabio Marco; Nakanishi, Hiromi; Seki, Motoaki; Geigenberger, Peter; Zocchi, Graziano; Nishizawa, Naoko K

    2016-03-01

    Iron (Fe) is an essential micronutrient for plant growth and development, and its reduced bioavailability strongly impairs mitochondrial functionality. In this work, the metabolic adjustment in the rice (Oryza sativa) mitochondrial Fe transporter knockdown mutant (mit-2) was analysed. Biochemical characterization of purified mitochondria from rice roots showed alteration in the respiratory chain of mit-2 compared with wild-type (WT) plants. In particular, proteins belonging to the type II alternative NAD(P)H dehydrogenases accumulated strongly in mit-2 plants, indicating that alternative pathways were activated to keep the respiratory chain working. Additionally, large-scale changes in the transcriptome and metabolome were observed in mit-2 rice plants. In particular, a strong alteration (up-/down-regulation) in the expression of genes encoding enzymes of both primary and secondary metabolism was found in mutant plants. This was reflected by changes in the metabolic profiles in both roots and shoots of mit-2 plants. Significant alterations in the levels of amino acids belonging to the aspartic acid-related pathways (aspartic acid, lysine, and threonine in roots, and aspartic acid and ornithine in shoots) were found that are strictly connected to the Krebs cycle. Furthermore, some metabolites (e.g. pyruvic acid, fumaric acid, ornithine, and oligosaccharides of the raffinose family) accumulated only in the shoot of mit-2 plants, indicating possible hypoxic responses. These findings suggest that the induction of local Fe deficiency in the mitochondrial compartment of mit-2 plants differentially affects the transcript as well as the metabolic profiles in root and shoot tissues. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.

  14. Influence of irradiated chitosan on rice plants growing in hydroponic medium contaminated with salt and heavy metals

    International Nuclear Information System (INIS)

    Lam, N.D.; Diep, T.B.; Kume, Tamikazu

    2000-01-01

    Effect of chitosan and radiation-degraded chitosan on rice seedlings of a Vietnam's original variety was investigated. Potential of irradiated chitosan in plant tolerance for several stress factors (salt, zinc, and vanadium) also was studied as well. Chitosan represented in hydroponic medium clearly inhibited the growth of rice seedlings at concentrations arranging from 50 ppm. Radiation processing of chitosan with dose higher than 100 kGy reduced toxicity of chitosan and the efficacy was of dose proportion. Rice plant of 203 origin was almost normally grown in hydroponic solution containing chitosan that has been irradiated with dose of 150 and 200 kGy. Irradiated chitosan increased plant resistance to environmental stress caused by vanadium (V); thereby the seedlings could be recovered completely, even gained in biomass. This effect was not appeared when applied chitosan to rice in media contaminated by zinc (Zn) and salt (NaCl). The selectness of irradiated chitosan on various stress factors partly clarified the assistant action of chitosan in the vanadium intoxication because chelating with metal ions could not be evaluated as main mechanism. (author)

  15. Assessment of water sources to plant growth in rice based cropping systems by stable water isotopes

    Science.gov (United States)

    Mahindawansha, Amani; Kraft, Philipp; Racela, Heathcliff; Breuer, Lutz

    2016-04-01

    Rice is one of the most water-consuming crops in the world. Understanding water source utilization of rice will help us to improve water use efficiency (WUE) in paddy management. The objectives of our study are to evaluate the isotopic compositions of surface ponded water, soil water, irrigation water, groundwater, rain water and plant water and based on stable water isotope signatures to evaluate the contributions of various water sources to plant growth (wet rice, aerobic rice and maize) together with investigating the contribution of water from different soil horizons for plant growth in different maturity periods during wet and dry seasons. Finally we will compare the water balances and crop yields in both crops during both seasons and calculate the water use efficiencies. This will help to identify the most efficient water management systems in rice based cropping ecosystems using stable water isotopes. Soil samples are collected from 9 different depths at up to 60 cm in vegetative, reproductive and matured periods of plant growth together with stem samples. Soil and plant samples are extracted by cryogenic vacuum extraction. Root samples are collected up to 60 cm depth from 10 cm intercepts leading calculation of root length density and dry weight. Groundwater, surface water, rain water and irrigation water are sampled weekly. All water samples are analyzed for hydrogen and oxygen isotope ratios (d18O and dD) using Los Gatos Research DLT100. Rainfall records, ground water level, surface water level fluctuations and the amount of water irrigated in each field will be measured during the sampling period. The direct inference approach which is based on comparing isotopic compositions (dD and d18O) between plant stem water and soil water will be used to determine water sources taken up by plant. Multiple-source mass balance assessment can provide the estimated range of potential contributions of water from each soil depth to root water uptake of a crop. These

  16. Characteristics of siRNAs derived from Southern rice black-streaked dwarf virus in infected rice and their potential role in host gene regulation.

    Science.gov (United States)

    Xu, Donglin; Zhou, Guohui

    2017-02-10

    Virus-derived siRNAs (vsiRNAs)-mediated RNA silencing plays important roles in interaction between plant viruses and their hosts. Southern rice black-streaked dwarf virus (SRBSDV) is a newly emerged devastating rice reovirus with ten dsRNA genomic segments. The characteristics of SRBSDV-derived siRNAs and their biological implications in SRBSDV-rice interaction remain unexplored. VsiRNAs profiling from SRBSDV-infected rice samples was done via small RNA deep sequencing. The putative rice targets of abundantly expressed vsiRNAs were bioinformatically predicted and subjected to functional annotation. Differential expression analysis of rice targets and RNA silencing components between infected and healthy samples was done using RT-qPCR. The vsiRNA was barely detectable at 14 days post infection (dpi) but abundantly present along with elevated expression level of the viral genome at 28 dpi. From the 28-dpi sample, 70,878 reads of 18 ~ 30-nt vsiRNAs were recognized (which mostly were 21-nt and 22-nt), covering 75 ~ 91% of the length of the ten genomic segments respectively. 86% of the vsiRNAs had a rice genes, including several types of host resistance or pathogenesis related genes encoding F-box/LRR proteins, receptor-like protein kinases, universal stress proteins, tobamovirus multiplication proteins, and RNA silencing components OsDCL2a and OsAGO17 respectively, some of which showed down regulation in infected plants in RT-qPCR. GO and KEGG classification showed that a majority of the predicted targets were related to cell parts and cellular processes and involved in carbohydrate metabolism, translation, and signal transduction. The silencing component genes OsDCL2a, OsDCL2b, OsDCL4, and OsAGO18 were down regulated, while OsAGO1d, OsAGO2, OsRDR1 and OsRDR6 were up regulated, significantly, upon SRBSDV infection. SRBSDV can regulate the expression of rice RNA silencing pathway components and the virus might compromise host defense and influence host

  17. Mitigating arsenic contamination in rice plants with an aquatic fern, Marsilea minuta.

    Science.gov (United States)

    Hassi, Ummehani; Hossain, Md Tawhid; Huq, S M Imamul

    2017-10-10

    Dangers of arsenic contamination are well known in human civilization. The threat increases when arsenic is accumulated in food and livestock through irrigated crops or animal food. Hence, it is important to mitigate the effects of arsenic as much as possible. This paper discusses a process for reducing the level of arsenic in different parts of rice plants with an aquatic fern, Marsilea minuta L. A pot experiment was done to study the possibility of using Marsilea minuta as a phytoremediator of arsenic. Rice and Marsilea minuta were allowed to grow together in soils. As a control, Marsilea minuta was also cultured alone in the presence and absence of arsenic (applied at 1 mg/L as irrigation water). We did not find any significant change in the growth of rice due to the association of Marsilea minuta, though it showed a reduction of approximately 58.64% arsenic accumulation in the roots of rice grown with the association of fern compared to that grown without fern. We measured a bioaccumulation factor (BF) of > 5.34, indicating that Marsilea minuta could be a good phytoremediator of arsenic in rice fields.

  18. The Polycistronic miR166k-166h Positively Regulates Rice Immunity via Post-transcriptional Control of EIN2

    Directory of Open Access Journals (Sweden)

    Raquel Salvador-Guirao

    2018-03-01

    Full Text Available MicroRNAs (miRNAs are small RNAs acting as regulators of gene expression at the post-transcriptional level. In plants, most miRNAs are generated from independent transcriptional units, and only a few polycistronic miRNAs have been described. miR166 is a conserved miRNA in plants targeting the HD-ZIP III transcription factor genes. Here, we show that a polycistronic miRNA comprising two miR166 family members, miR166k and miR166h, functions as a positive regulator of rice immunity. Rice plants with activated MIR166k-166h expression showed enhanced resistance to infection by the fungal pathogens Magnaporthe oryzae and Fusarium fujikuroi, the causal agents of the rice blast and bakanae disease, respectively. Disease resistance in rice plants with activated MIR166k-166h expression was associated with a stronger expression of defense responses during pathogen infection. Stronger induction of MIR166k-166h expression occurred in resistant but not susceptible rice cultivars. Notably, the ethylene-insensitive 2 (EIN2 gene was identified as a novel target gene for miR166k. The regulatory role of the miR166h-166k polycistron on the newly identified target gene results from the activity of the miR166k-5p specie generated from the miR166k-166h precursor. Collectively, our findings support a role for miR166k-5p in rice immunity by controlling EIN2 expression. Because rice blast is one of the most destructive diseases of cultivated rice worldwide, unraveling miR166k-166h-mediated mechanisms underlying blast resistance could ultimately help in designing appropriate strategies for rice protection.

  19. Ethnobotanical investigation of 'wild' food plants used by rice farmers in Kalasin, Northeast Thailand

    NARCIS (Netherlands)

    Cruz Garcia, G.S.; Price, L.L.

    2011-01-01

    Background Wild food plants are a critical component in the subsistence system of rice farmers in Northeast Thailand. One of the important characteristics of wild plant foods among farming households is that the main collection locations are increasingly from anthropogenic ecosystems such as

  20. Ethnobotanical investigation of 'wild' food plants used by rice farmers in Kalasin, Northeast Thailand

    Directory of Open Access Journals (Sweden)

    Cruz-Garcia Gisella S

    2011-11-01

    Full Text Available Abstract Background Wild food plants are a critical component in the subsistence system of rice farmers in Northeast Thailand. One of the important characteristics of wild plant foods among farming households is that the main collection locations are increasingly from anthropogenic ecosystems such as agricultural areas rather than pristine ecosystems. This paper provides selected results from a study of wild food conducted in several villages in Northeast Thailand. A complete botanical inventory of wild food plants from these communities and surrounding areas is provided including their diversity of growth forms, the different anthropogenic locations were these species grow and the multiplicity of uses they have. Methods Data was collected using focus groups and key informant interviews with women locally recognized as knowledgeable about contemporarily gathered plants. Plant species were identified by local taxonomists. Results A total of 87 wild food plants, belonging to 47 families were reported, mainly trees, herbs (terrestrial and aquatic and climbers. Rice fields constitute the most important growth location where 70% of the plants are found, followed by secondary woody areas and home gardens. The majority of species (80% can be found in multiple growth locations, which is partly explained by villagers moving selected species from one place to another and engaging in different degrees of management. Wild food plants have multiple edible parts varying from reproductive structures to vegetative organs. More than two thirds of species are reported as having diverse additional uses and more than half of them are also regarded as medicine. Conclusions This study shows the remarkable importance of anthropogenic areas in providing wild food plants. This is reflected in the great diversity of species found, contributing to the food and nutritional security of rice farmers in Northeast Thailand.

  1. Rice Blast Control and Polyvarietal Planting in the Philippines: A Study in Genotype by Environment Biogeography

    Directory of Open Access Journals (Sweden)

    Daniel J. Falvo

    2001-06-01

    Full Text Available Current approaches to biogeography are based on organismic biology. Certain biogeographical phenomena, however, cannot be fully understood using organismic approaches to biogeography. I employed an approach based on molecular biology and biochemistry that I call genotype by environment biogeography in order to provide a more complete understanding of why the dispersal of rice blast disease is less efficient in fields planted with mixtures of rice varieties. In a case study of an upland ricefield in the Philippines, I found that planting varietal mixtures results in a form of effective blast control that I call intrafield gene deployment. I suggest that intrafield gene deployment be used to design more effective methods of blast control in intensive rice agriculture.

  2. EFFECT OF ALUMINUM ON PLANT GROWTH, PHOSPORUS AND CALCIUM UPTAKE OF TROPICAL RICE (Oryza sativa, MAIZE (Zea mays, AND SOYBEAN (Glycine max

    Directory of Open Access Journals (Sweden)

    D. Nursyamsi

    2018-01-01

    Full Text Available Aluminum toxicity is the most limiting factor to plant growth on acid soils. Structural and functional damages in the root system by Al decrease nutrient uptake and lead to reduce plant growth and mineral deficiency in shoot. Greenhouse experiment was conducted to study the effect of Al on plant growth, and P and Ca uptake of rice, maize, and soybean. The plants were grown in hydroponic solution added with 0, 5, 10, and 30 ppm Al, at pH 4.0. The results showed that relative growth of shoots and roots of upland rice, lowland rice, maize, and soybean decreased with an increase of Al level. However, sometimes the low Al level (5 ppm stimulated shoot and root growth of some varieties in these species. According to total AlRG30 values, which is Al concentration in solution when relative growth decreased to 50%, Al tolerance of species was in order of barley < maize < soybean < lowland rice < upland rice. For maize, Al tolerance was in the order of Arjuna < Kalingga < P 3540 < SA 5 < SA 4 < PM 95 A < SA 3 < Antasena; for soybean was Wilis < INPS < Galunggung < Kerinci < Kitamusume; for lowland rice was RD 23 < Kapuas < Cisadane < KDML 105 < IR 66 < RD 13, and for upland rice was Dodokan < JAC165 < Cirata < Orizyca sabana 6 < Danau Tempe < Laut Tawar. Based on the rank of Al tolerance, rice was the useful crop to be planted in acid soils. Antasena (maize, Kitamusume ( soybean , RD 13 (lowland rice, and Laut Tawar (upland rice were also recommended for acid soils. P and Ca concentration in shoots and roots commonly decreased with an increase of Al level. However, the low Al level stimulated absorption of P and Ca concentrations in shoots and roots.

  3. Arabidopsis thaliana: A model host plant to study plant-pathogen interaction using rice false smut isolates of Ustilaginoidea virens

    Directory of Open Access Journals (Sweden)

    Mebeaselassie eAndargie

    2016-02-01

    Full Text Available Rice false smut fungus which is a biotrophic fungal pathogen causes an important rice disease and bring a severe damage where rice is cultivated. We established a new fungal-plant pathosystem where Ustilaginoidea virens was able to interact compatibly with the model plant Arabidopsis thaliana. Disease symptoms were apparent on the leaves of the plants after 6 days of post inoculation in the form of chlorosis. Cytological studies showed that U. virens caused a heavy infestation inside the cells of the chlorotic tissues. Development and colonization of aerial mycelia in association with floral organ, particularly on anther and stigma of the flowers after 3 weeks of post inoculation was evident which finally caused infection on the developing seeds and pod tissues. The fungus adopts a uniquely biotrophic infection strategy in roots and spreads without causing a loss of host cell viability. We have also demonstrated that U. virens isolates infect Arabidopsis and the plant subsequently activates different defense response mechanisms which are witnessed by the expression of pathogenesis-related genes, PR-1, PR-2, PR-5, PDF1.1 and PDF1.2. The established A. thaliana–U. virens pathosystem will now permit various follow-up molecular genetics and gene expression experiments to be performed to identify the defense signals and responses that restrict fungal hyphae colonization in planta and also provide initial evidence for tissue-adapted fungal infection strategies.

  4. Field response of aboveground non-target arthropod community to transgenic Bt-Cry1Ab rice plant residues in postharvest seasons.

    Science.gov (United States)

    Bai, Yao-Yu; Yan, Rui-Hong; Ye, Gong-Yin; Huang, Fangneng; Wangila, David S; Wang, Jin-Jun; Cheng, Jia-An

    2012-10-01

    Risk assessments of ecological effects of transgenic rice expressing lepidoptera-Cry proteins from Bacillus thuringiensis (Bt) on non-target arthropods have primarily focused on rice plants during cropping season, whereas few studies have investigated the effects in postharvest periods. Harvested rice fallow fields provide a critical over-wintering habitat for arthropods in the Chinese rice ecosystems, particularly in the southern region of the country. During 2006-08, two independent field trials were conducted in Chongqing, China to investigate the effects of transgenic Cry1Ab rice residues on non-target arthropod communities. In each trial, pitfall traps were used to sample arthropods in field plots planted with one non-Bt variety and two Bt rice lines expressing the Cry1Ab protein. Aboveground arthropods in the trial plots during the postharvest season were abundant, while community densities varied significantly between the two trials. A total of 52,386 individual insects and spiders, representing 93 families, was captured in the two trials. Predominant arthropods sampled were detritivores, which accounted for 91.9% of the total captures. Other arthropods sampled included predators (4.2%), herbivores (3.2%), and parasitoids (0.7%). In general, there were no significant differences among non-Bt and Bt rice plots in all arthropod community-specific parameters for both trials, suggesting no adverse impact of the Bt rice plant residues on the aboveground non-target arthropod communities during the postharvest season. The results of this study provide additional evidence that Bt rice is safe to non-target arthropod communities in the Chinese rice ecosystems.

  5. Determination of plant species for the phytoremediation of carbofuran residue in rice field soils

    Directory of Open Access Journals (Sweden)

    Alissara Reungsang

    2005-09-01

    Full Text Available This study searched for plant species suitable for accumulating carbofuran residue in rice field soil. Three groups of plant, i.e. grass crops, upland crops, and vegetable crops, were grown in 8 inches diameter plastic pots filled with soil containing 5 mg/kg carbofuran. Parts of plants (stems and leaves, roots, fruits were harvested at day 120 and analyzed for carbofuran residue using HPLC. The results indicated that Helianthus annuus L. (sunflower was the most suitable species for phytoremediation of carbofuran residue in rice field soil because it highly accumulated carbofuran up to 93.4 μg/kg dry weight in its stems and leaves. In addition, H. annuus L. (sunflower could tolerate carbofuran since it showed similar physical appearance (circumference and height to control not receiving carbofuran.

  6. Changes of organic acid exudation and rhizosphere pH in rice plants under chromium stress

    International Nuclear Information System (INIS)

    Zeng Fanrong; Chen Song; Miao Ying; Wu Feibo; Zhang Guoping

    2008-01-01

    The effect of chromium (Cr) stress on the changes of rhizosphere pH, organic acid exudation, and Cr accumulation in plants was studied using two rice genotypes differing in grain Cr accumulation. The results showed that rhizosphere pH increased with increasing level of Cr in the culture solution and with an extended time of Cr exposure. Among the six organic acids examined in this experiment, oxalic and malic acid contents were relatively higher, and had a significant positive correlation with the rhizosphere pH, indicating that they play an important role in changing rhizosphere pH. The Cr content in roots was significantly higher than that in stems and leaves. Cr accumulation in plants was significantly and positively correlated with rhizosphere pH, and the exudation of oxalic, malic and citric acids, suggesting that an increase in rhizosphere pH, and exudation of oxalic, malic and citric acid enhances Cr accumulation in rice plants. - Rhizosphere pH and organic acid exudation of rice roots are markedly affected by chromium level in culture solution

  7. Virus-mediated chemical changes in rice plants impact the relationship between non-vector planthopper Nilaparvata lugens Stål and its egg parasitoid Anagrus nilaparvatae Pang et Wang.

    Science.gov (United States)

    He, Xiaochan; Xu, Hongxing; Gao, Guanchun; Zhou, Xiaojun; Zheng, Xusong; Sun, Yujian; Yang, Yajun; Tian, Junce; Lu, Zhongxian

    2014-01-01

    In order to clarify the impacts of southern rice black-streaked dwarf virus (SRBSDV) infection on rice plants, rice planthoppers and natural enemies, differences in nutrients and volatile secondary metabolites between infected and healthy rice plants were examined. Furthermore, the impacts of virus-mediated changes in plants on the population growth of non-vector brown planthopper (BPH), Nilaparvata lugens, and the selectivity and parasitic capability of planthopper egg parasitoid Anagrus nilaparvatae were studied. The results showed that rice plants had no significant changes in amino acid and soluble sugar contents after SRBSDV infection, and SRBSDV-infected plants had no significant effect on population growth of non-vector BPH. A. nilaparvatae preferred BPH eggs both in infected and healthy rice plants, and tended to parasitize eggs on infected plants, but it had no significant preference for infected plants or healthy plants. GC-MS analysis showed that tridecylic aldehyde occurred only in rice plants infected with SRBSDV, whereas octanal, undecane, methyl salicylate and hexadecane occurred only in healthy rice plants. However, in tests of behavioral responses to these five volatile substances using a Y-tube olfactometer, A. nilaparvatae did not show obvious selectivity between single volatile substances at different concentrations and liquid paraffin in the control group. The parasitic capability of A. nilaparvatae did not differ between SRBSDV-infected plants and healthy plant seedlings. The results suggested that SRBSDV-infected plants have no significant impacts on the non-vector planthopper and its egg parasitoid, A. nilaparvatae.

  8. Virus-mediated chemical changes in rice plants impact the relationship between non-vector planthopper Nilaparvata lugens Stål and its egg parasitoid Anagrus nilaparvatae Pang et Wang.

    Directory of Open Access Journals (Sweden)

    Xiaochan He

    Full Text Available In order to clarify the impacts of southern rice black-streaked dwarf virus (SRBSDV infection on rice plants, rice planthoppers and natural enemies, differences in nutrients and volatile secondary metabolites between infected and healthy rice plants were examined. Furthermore, the impacts of virus-mediated changes in plants on the population growth of non-vector brown planthopper (BPH, Nilaparvata lugens, and the selectivity and parasitic capability of planthopper egg parasitoid Anagrus nilaparvatae were studied. The results showed that rice plants had no significant changes in amino acid and soluble sugar contents after SRBSDV infection, and SRBSDV-infected plants had no significant effect on population growth of non-vector BPH. A. nilaparvatae preferred BPH eggs both in infected and healthy rice plants, and tended to parasitize eggs on infected plants, but it had no significant preference for infected plants or healthy plants. GC-MS analysis showed that tridecylic aldehyde occurred only in rice plants infected with SRBSDV, whereas octanal, undecane, methyl salicylate and hexadecane occurred only in healthy rice plants. However, in tests of behavioral responses to these five volatile substances using a Y-tube olfactometer, A. nilaparvatae did not show obvious selectivity between single volatile substances at different concentrations and liquid paraffin in the control group. The parasitic capability of A. nilaparvatae did not differ between SRBSDV-infected plants and healthy plant seedlings. The results suggested that SRBSDV-infected plants have no significant impacts on the non-vector planthopper and its egg parasitoid, A. nilaparvatae.

  9. Leaf temperature and transpiration of rice plants in relation to short-wave radiation and wind speed

    International Nuclear Information System (INIS)

    Ito, D.; Haseba, T.

    1984-01-01

    Leaf temperature and transpiration amount of rice plants were measured in a steady environment in a laboratory and in field situations. The plants set in Wagner pots were used. Experiments were carried out at the tillering and booting stages, and on the date of maturity. Measured leaf temperatures and transpiration rates were analyzed in connection with incident short-wave radiation on a leaf and wind speed measured simultaneously.Instantaneous supplying and turning-off of steady artificial light caused cyclic changes in leaf temperature and transpiration. Leaf temperature dropped in feeble illumination compared with the steady temperature in the preceeding dark.On the date of maturity, a rice plant leaf was warmer than the air, even in feeble light. Then, the leaf-air temperature difference and transpiration rate showed approximately linear increases with short-wave radiation intensity. On the same date, an increase in wind speed produced a decrease in leaf-air temperature difference, i.e., leaf temperature dropped, and an increase in transpiration rate. The rates of both changes in leaf temperature and transpiration rate were fairly large in a range of wind speed below about 1m/s.For rice plants growing favorably from the tillering stage through the booting stage, the leaves were considerably cooler than the air, even in an intense light and/or solar radiation. The leaf temperature showed the lowest value at short-wave radiations between 0.15 and 0.20ly/min, at above which the leaf temperature rised with an increase in short-wave radiation until it approached the air temperature. Transpiration rate of rice plants increased rapidly with an increase in short-wave radiation ranging below 0.2 or 0.3ly/min, at above which the increase in transpiration rate slowed.The relationships between leaf temperature and/or transpiration rate and wind speed and/or incident short-wave radiation (solar radiation) which were obtained experimentally, supported the relationships

  10. Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice

    Science.gov (United States)

    Yang, Wanneng; Guo, Zilong; Huang, Chenglong; Duan, Lingfeng; Chen, Guoxing; Jiang, Ni; Fang, Wei; Feng, Hui; Xie, Weibo; Lian, Xingming; Wang, Gongwei; Luo, Qingming; Zhang, Qifa; Liu, Qian; Xiong, Lizhong

    2014-01-01

    Even as the study of plant genomics rapidly develops through the use of high-throughput sequencing techniques, traditional plant phenotyping lags far behind. Here we develop a high-throughput rice phenotyping facility (HRPF) to monitor 13 traditional agronomic traits and 2 newly defined traits during the rice growth period. Using genome-wide association studies (GWAS) of the 15 traits, we identify 141 associated loci, 25 of which contain known genes such as the Green Revolution semi-dwarf gene, SD1. Based on a performance evaluation of the HRPF and GWAS results, we demonstrate that high-throughput phenotyping has the potential to replace traditional phenotyping techniques and can provide valuable gene identification information. The combination of the multifunctional phenotyping tools HRPF and GWAS provides deep insights into the genetic architecture of important traits. PMID:25295980

  11. Water culture of the rice containing Cs-137

    International Nuclear Information System (INIS)

    Choi, Yong Ho; Keum, Dong Kwon; Lim, Kwang Muk; Jun, In; Park, Doo Won

    2008-10-01

    Pot experiments were carried out in a greenhouse in order to produce Cs-137-containing rice seeds as a source material for use in manufacturing reference rice samples of a high Cs-137 activity. Two kinds of soil were used and two pots were prepared for each kind of soil. Rice plants were water-cultured in the pots and Cs-137 was applied to the surface water to induce a Cs-137 contamination of rice seeds via a plant uptake of Cs-137. Mature rice plants were harvested and Cs-137-containing rice seeds were obtained after some treatment of the harvested plants. These produced rice seeds are going to be provided for the KRISS so as to be used in manufacturing reference rice samples for Cs-137

  12. Transgenic rice seed expressing flavonoid biosynthetic genes accumulate glycosylated and/or acylated flavonoids in protein bodies

    Science.gov (United States)

    Ogo, Yuko; Mori, Tetsuya; Nakabayashi, Ryo; Saito, Kazuki; Takaiwa, Fumio

    2016-01-01

    Plant-specialized (or secondary) metabolites represent an important source of high-value chemicals. In order to generate a new production platform for these metabolites, an attempt was made to produce flavonoids in rice seeds. Metabolome analysis of these transgenic rice seeds using liquid chromatography-photodiode array-quadrupole time-of-flight mass spectrometry was performed. A total of 4392 peaks were detected in both transgenic and non-transgenic rice, 20–40% of which were only detected in transgenic rice. Among these, 82 flavonoids, including 37 flavonols, 11 isoflavones, and 34 flavones, were chemically assigned. Most of the flavonols and isoflavones were O-glycosylated, while many flavones were O-glycosylated and/or C-glycosylated. Several flavonoids were acylated with malonyl, feruloyl, acetyl, and coumaroyl groups. These glycosylated/acylated flavonoids are thought to have been biosynthesized by endogenous rice enzymes using newly synthesized flavonoids whose biosynthesis was catalysed by exogenous enzymes. The subcellular localization of the flavonoids differed depending on the class of aglycone and the glycosylation/acylation pattern. Therefore, flavonoids with the intended aglycones were efficiently produced in rice seeds via the exogenous enzymes introduced, while the flavonoids were variously glycosylated/acylated by endogenous enzymes. The results suggest that rice seeds are useful not only as a production platform for plant-specialized metabolites such as flavonoids but also as a tool for expanding the diversity of flavonoid structures, providing novel, physiologically active substances. PMID:26438413

  13. Gene expression analysis in rice plants after external radiation exposure in Iitate village

    Energy Technology Data Exchange (ETDEWEB)

    Hayashi, G.; Fukumoto, M. [Institute of Development, Aging and Cancer, Tohoku University (Japan); Imanaka, T. [Research Reactor Institute, Kyoto University (Japan); Shibato, J. [Department of Anatomy I, School of Medicine, Showa University (Japan); Kubo, A. [Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies (Japan); Kikuchi, S. [Plant Genome Research Unit, Agrogenomics Research Center, National Institute of Agrobiological Sciences (Japan); Rakwal, R. [Organization for Educational Initiatives, University of Tsukuba (Japan)

    2014-07-01

    Rice plants exposed to radiation respond to the stress by activating self-defense mechanisms. A well-established molecular approach to measure stress is by cataloging global gene expression profiles. Here, we examined the effect of radiation exposure in a cereal crop model plant - rice (Oryza sativa L.) cultivar Nipponbare - in the village of Iitate of Fukushima prefecture. Iitate village is a highly radio-contaminated site due to the Fukushima Daiichi nuclear power plant accident following the Great East Japan Earthquake. The experimental approach comprised of five steps. First, healthy rice seedlings were grown in the greenhouse facility at National Institute for Environmental Sciences. Post-germination at 30 deg. C similarly germinated seeds were placed in neat rows in seedling pots having commercial soil (JA Zen-Noh, Japan; http//www.zennoh.or.jp/) with recommended NPK (nitrogen, phosphorus, and potash) doses at a controlled (25 deg. C, 70% relative humidity and natural light condition) greenhouse. Second, the seedlings were transported from a controlled greenhouse in Tsukuba to Iitate Farm (ITF) and placed, with no direct contact with soil, in a low-level gamma field where the rate of Cs-137 was 700 kBq/m{sup 2}. Third, exposure periods were set at 6, 12, 24, 48, and 72 h after arrival at ITF, and rice leaves at the 3. position (from the base) from 6 to 10 seedlings were sampled in dry ice. As control, rice leaves were sampled at the start in Tsukuba and immediately at arrival upon ITF; to know the radiation levels during growth and transport of the rice to ITF, accumulated radiation dose was calculated using a MYDOSE mini electronic pocket dosimeter (model PDM-222-52, ALOKA, Japan). A sample set was also taken at 72 h from healthy rice seedlings in the greenhouse at Tsukuba. All samples were stored at -80 deg. C. Accumulated total dose for exposed rice seedlings at 72 h was 200 mSv. Fourth, gene expression analysis was initiated by grinding the leaves to a

  14. Response of rice to inoculation with plant growth promoting rhizobacteria in control lab environment and field experiment

    International Nuclear Information System (INIS)

    Ahmed, B.

    2014-01-01

    The present study was conducted to evaluate the effects of bacterial inoculation on different growth parameters of rice variety JP-5. Three bacterial strains (Azospirillum brasilense R1, Azospirillum lipoferum RSWT1 and Pseudomonas Ky1) were used to inoculate rice varietyJP-5 at control lab environment and field. Plant growth promotion was observed in all inoculated treatments over non-inoculated, which was evident from increase in root area, root length, number of tillers, straw and grain yields and total weight of plant. Azospirillum brasilense R1 was more effective in plant growth promotion than other strains and showed 19% increase in the straw weight and 39.5% increase in grain weight. Inoculation with Azospirillum lipoferum RSWT1 and Pseudomonas Ky1 increased grain weight by 18.5% and 13.8% respectively. The study revealed that beneficial strains of PGPR can be used as biofertilizer for rice. (author)

  15. Arbuscular mycorrhizal symbiosis ameliorates the optimum quantum yield of photosystem II and reduces non-photochemical quenching in rice plants subjected to salt stress.

    Science.gov (United States)

    Porcel, Rosa; Redondo-Gómez, Susana; Mateos-Naranjo, Enrique; Aroca, Ricardo; Garcia, Rosalva; Ruiz-Lozano, Juan Manuel

    2015-08-01

    Rice is the most important food crop in the world and is a primary source of food for more than half of the world population. However, salinity is considered the most common abiotic stress reducing its productivity. Soil salinity inhibits photosynthetic processes, which can induce an over-reduction of the reaction centres in photosystem II (PSII), damaging the photosynthetic machinery. The arbuscular mycorrhizal (AM) symbiosis may improve host plant tolerance to salinity, but it is not clear how the AM symbiosis affects the plant photosynthetic capacity, particularly the efficiency of PSII. This study aimed at determining the influence of the AM symbiosis on the performance of PSII in rice plants subjected to salinity. Photosynthetic activity, plant gas-exchange parameters, accumulation of photosynthetic pigments and rubisco activity and gene expression were also measured in order to analyse comprehensively the response of the photosynthetic processes to AM symbiosis and salinity. Results showed that the AM symbiosis enhanced the actual quantum yield of PSII photochemistry and reduced the quantum yield of non-photochemical quenching in rice plants subjected to salinity. AM rice plants maintained higher net photosynthetic rate, stomatal conductance and transpiration rate than nonAM plants. Thus, we propose that AM rice plants had a higher photochemical efficiency for CO2 fixation and solar energy utilization and this increases plant salt tolerance by preventing the injury to the photosystems reaction centres and by allowing a better utilization of light energy in photochemical processes. All these processes translated into higher photosynthetic and rubisco activities in AM rice plants and improved plant biomass production under salinity. Copyright © 2015 Elsevier GmbH. All rights reserved.

  16. The humic acids from vermicompost protect rice (Oryza sativa L.) plants against a posterior hidric stress

    International Nuclear Information System (INIS)

    Guridi-Izquierdo, Fernando; Martínez-Balmori, Dariellys; Rosquete-Bassó, Mayelín; Calderín-García, Andrés; Louro-Berbara, Ricardo L.

    2017-01-01

    The humic acids (HA) from two different vermicompost were extracted, isolated, purified and partially characterized, to evaluate their possible protection in rice (Oryza sativa L.) plants against an hydric stress. Differences in elemental composition, as the coagulation threshold value and E4/E6 relation in their UV-Vis spectra were found. Two concentrations (40 and 60 mg L-1) of both HA were included in the nutritive solutions for rice plants in controlled conditions. It was verified that the previous treatment with the HA during six days stimulated the root biomass production. Later the HA were excluded and was an hydric deficit induced by adding polietilenglicol (PEG-6000) in the initially treated plants and in a group of those used as control. After 96 hours of this final condition the net radical biomass, the photosynthetic pigments content and the root membrane permeability were evaluated. In the plants previously treated with HA (at the concentration 60 mg HA L-1), the root membrane permeability, the net radical biomass production and the “a” chlorophyll content had no differences when compared with those without stress. It was concluded that the previous treatment with the HA protected the rice plants against a posterior hydric stress that was induced. (author)

  17. Isolation and characterization of plant growth promoting endophytic diazotrophic bacteria from Korean rice cultivars.

    Science.gov (United States)

    Ji, Sang Hye; Gururani, Mayank Anand; Chun, Se-Chul

    2014-01-20

    We have isolated 576 endophytic bacteria from the leaves, stems, and roots of 10 rice cultivars and identified 12 of them as diazotrophic bacteria using a specific primer set of nif gene. Through 16S rDNA sequence analysis, nifH genes were confirmed in the two species of Penibacillus, three species of Microbacterium, three Bacillus species, and four species of Klebsiella. Rice seeds treated with these plant growth-promoting bacteria (PGPB) showed improved plant growth, increased height and dry weight and antagonistic effects against fungal pathogens. In addition, auxin and siderophore producing ability, and phosphate solubilizing activity were studied for the possible mechanisms of plant growth promotion. Among 12 isolates tested, 10 strains have shown higher auxin producing activity, 6 isolates were confirmed as strains with high siderophore producing activity while 4 isolates turned out to have high phosphate-solubilizing activity. These results strongly suggest that the endophytic diazotrophic bacteria characterized in this study could be successfully used to promote plant growth and inducing fungal resistance in plants. Copyright © 2013 Elsevier GmbH. All rights reserved.

  18. RiceAtlas, a spatial database of global rice calendars and production

    NARCIS (Netherlands)

    Laborte, Alice G.; Gutierrez, Mary Anne; Balanza, Jane Girly; Saito, Kazuki; Zwart, Sander; Boschetti, Mirco; Murty, M. V.R.; Villano, Lorena; Aunario, Jorrel Khalil; Reinke, Russell; Koo, Jawoo; Hijmans, Robert J.; Nelson, Andrew

    2017-01-01

    Knowing where, when, and how much rice is planted and harvested is crucial information for understanding the effects of policy, trade, and global and technological change on food security. We developed RiceAtlas, a spatial database on the seasonal distribution of the world's rice production. It

  19. Ethanol production from rice on radioactively contaminated field toward sustainable rice farming

    International Nuclear Information System (INIS)

    Yokoyama, Shinya; Izumi, Bintaro; Oki, Kazuo

    2011-01-01

    Radioactive species such as 137 Cs were discharged from Fukushima Daiichi Nuclear Power Plant which was severely damaged by the enormous earthquake and tsunami. Cropland has been radioactively contaminated by 137 Cs etc. and it seems impossible to plant rice due to the non-suitability for food. According to the reports, 137 Cs transferred into the rice from soil is less than 1% on the average. Therefore, it is expected that the concentration of 137 Cs in bioethanol will be well below the tentative restriction value even if bioethanol could be produced from the rice. It is proposed that the rice field should be filled with water to avoid the flow of runoff contaminated by radioactive cesium compounds because they are insoluble in aqueous phase and that bioethanol should be produced from the rice in order to maintain the multifunction of rice field and to continue the agriculture. If rice farming is halted and neglected, agricultural function of rice field as well as local community will be permanently destroyed. (author)

  20. Biocontrol and plant growth promoting activities of a Streptomyces corchorusii strain UCR3-16 and preparation of powder formulation for application as biofertilizer agents for rice plant.

    Science.gov (United States)

    Tamreihao, K; Ningthoujam, Debananda S; Nimaichand, Salam; Singh, Elangbam Shanta; Reena, Pascal; Singh, Salam Herojeet; Nongthomba, Upendra

    2016-11-01

    Streptomyces corchorusii strain UCR3-16, obtained from rice rhizospheric soils showed antifungal activities against 6 major rice fungal pathogens by diffusible and volatile compounds production. The strain was found positive for production of fungal cell wall degrading enzymes such as chitinase, β-1,3-glucanase, β-1,4-glucanase, lipase and protease. The strain was also positive for plant growth promoting traits. It produced up to 30.5μg/ml of IAA and solubilized a significant amount of inorganic phosphate (up to 102μg/ml). It also produced 69% siderophore units. The strain also produced ammonia and gave positive result for ACC deaminase activity. Highest vigor index of inoculated seedlings was observed when rice seeds were treated with cell suspension of UCR3-16 corresponding to 4.5×10(8)cfu/ml. Bioinoculant-treated seeds also showed similar results under pathogen challenged conditions. In pot trial experiments, UCR3-16-treated rice plants showed significantly increased growth and grain yield production. Powder formulation of the strain was developed using talcum and corn starch as carriers and the shelf-lives were monitored. Talcum formulation showed higher cell-count than corn starch even after 6 months of storage, and optimum condition for storage of the powder formulation were found to be at 4°C. Pot trial experiments using talcum powder formulation also showed significant positive effects on growth of rice plants. Field trial using talcum powder formulation also exhibited significant enhancement in shoot length and weight of shoot and root, and total grain yield and weight of grains in rice plants. Talcum formulation also significantly reduced the sheath blight disease in rice leaves. Copyright © 2016. Published by Elsevier GmbH.

  1. Metaproteomic identification of diazotrophic methanotrophs and their localization in root tissues of field-grown rice plants.

    Science.gov (United States)

    Bao, Zhihua; Okubo, Takashi; Kubota, Kengo; Kasahara, Yasuhiro; Tsurumaru, Hirohito; Anda, Mizue; Ikeda, Seishi; Minamisawa, Kiwamu

    2014-08-01

    In a previous study by our group, CH4 oxidation and N2 fixation were simultaneously activated in the roots of wild-type rice plants in a paddy field with no N input; both processes are likely controlled by a rice gene for microbial symbiosis. The present study examined which microorganisms in rice roots were responsible for CH4 oxidation and N2 fixation under the field conditions. Metaproteomic analysis of root-associated bacteria from field-grown rice (Oryza sativa Nipponbare) revealed that nitrogenase complex-containing nitrogenase reductase (NifH) and the alpha subunit (NifD) and beta subunit (NifK) of dinitrogenase were mainly derived from type II methanotrophic bacteria of the family Methylocystaceae, including Methylosinus spp. Minor nitrogenase proteins such as Methylocella, Bradyrhizobium, Rhodopseudomonas, and Anaeromyxobacter were also detected. Methane monooxygenase proteins (PmoCBA and MmoXYZCBG) were detected in the same bacterial group of the Methylocystaceae. Because these results indicated that Methylocystaceae members mediate both CH4 oxidation and N2 fixation, we examined their localization in rice tissues by using catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH). The methanotrophs were localized around the epidermal cells and vascular cylinder in the root tissues of the field-grown rice plants. Our metaproteomics and CARD-FISH results suggest that CH4 oxidation and N2 fixation are performed mainly by type II methanotrophs of the Methylocystaceae, including Methylosinus spp., inhabiting the vascular bundles and epidermal cells of rice roots. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

  2. PDH45 overexpressing transgenic tobacco and rice plants provide salinity stress tolerance via less sodium accumulation.

    Science.gov (United States)

    Nath, Manoj; Garg, Bharti; Sahoo, Ranjan Kumar; Tuteja, Narendra

    2015-01-01

    Salinity stress negatively affects the crop productivity worldwide, including that of rice. Coping with these losses is a major concern for all countries. The pea DNA helicase, PDH45 is a unique member of helicase family involved in the salinity stress tolerance. However, the exact mechanism of the PDH45 in salinity stress tolerance is yet to be established. Therefore, the present study was conducted to investigate the mechanism of PDH45-mediated salinity stress tolerance in transgenic tobacco and rice lines along with wild type (WT) plants using CoroNa Green dye based sodium localization in root and shoot sections. The results showed that under salinity stress root and shoot of PDH45 overexpressing transgenic tobacco and rice accumulated less sodium (Na(+)) as compared to their respective WT. The present study also reports salinity tolerant (FL478) and salinity susceptible (Pusa-44) varieties of rice accumulated lowest and highest Na(+) level, respectively. All the varieties and transgenic lines of rice accumulate differential Na(+) ions in root and shoot. However, roots accumulate high Na(+) as compared to the shoots in both tobacco and rice transgenic lines suggesting that the Na(+) transport in shoot is somehow inhibited. It is proposed that the PDH45 is probably involved in the deposition of apoplastic hydrophobic barriers and consequently inhibit Na(+) transport to shoot and therefore confers salinity stress tolerance to PDH45 overexpressing transgenic lines. This study concludes that tobacco (dicot) and rice (monocot) transgenic plants probably share common salinity tolerance mechanism mediated by PDH45 gene.

  3. Generation of poly-β-hydroxybutyrate from acetate in higher plants: Detection of acetoacetyl CoA reductase- and PHB synthase- activities in rice.

    Science.gov (United States)

    Tsuda, Hirohisa; Shiraki, Mari; Inoue, Eri; Saito, Terumi

    2016-08-20

    It has been reported that Poly-β-hydroxybutyrate (PHB) is generated from acetate in the rice root. However, no information is available about the biosynthetic pathway of PHB from acetate in plant cells. In the bacterium Ralstonia eutropha H16 (R. eutropha), PHB is synthesized from acetyl CoA by the consecutive reaction of three enzymes: β-ketothiolase (EC: 2.3.1.9), acetoacetyl CoA reductase (EC: 1.1.1.36) and PHB synthase (EC: 2.3.1.-). Thus, in this study, we examined whether the above three enzymatic activities were also detected in rice seedlings. The results clearly showed that the activities of the above three enzymes were all detected in rice. In particular, the PHB synthase activity was detected specifically in the sonicated particulate fractions (2000g 10min precipitate (ppt) and the 8000g 30min ppt) of rice roots and leaves. In addition to these enzyme activities, several new experimental results were obtained on PHB synthesis in higher plants: (a) (14)C-PHB generated from 2-(14)C-acetate was mainly localized in the 2000g 10min ppt and the 8000g 30min ppt of rice root. (b) Addition of acetate (0.1-10mM) to culture medium of rice seedlings did not increase the content of PHB in the rice root or leaf. (c) In addition to C3 plants, PHB was generated from acetate in a C4 plant (corn) and in a CAM plant (Bryophyllum pinnatum). d) Washing with ethylenediaminetetraacetic acid (EDTA) strongly suggested that the PHB synthesized from acetate was of plant origin and was not bacterial contamination. Copyright © 2016 Elsevier GmbH. All rights reserved.

  4. Molecular dynamics of detoxification and toxin-tolerance genes in brown planthopper (Nilaparvata lugens Stål., Homoptera: Delphacidae) feeding on resistant rice plants.

    Science.gov (United States)

    Yang, Zhifan; Zhang, Futie; He, Qing; He, Guangcun

    2005-06-01

    To investigate the molecular response of brown planthopper, Nilaparvata lugens (BPH) to BPH-resistant rice plants, we isolated cDNA fragments of the genes encoding for carboxylesterase (CAR), trypsin (TRY), cytochrome P450 monooxygenase (P450), NADH-quinone oxidoreductase (NQO), acetylcholinesterase (ACE), and Glutathione S-transferase (GST). Expression profiles of the genes were monitored on fourth instar nymphs feeding on rice varieties with different resistance levels. Northern blot hybridization showed that, compared with BPH reared on susceptible rice TN1, expression of the genes for P450 and CAR was apparently up-regulated and TRY mRNA decreased in BPH feeding on a highly resistant rice line B5 and a moderately resistant rice variety MH63, respectively. Two transcripts of GST increased in BPH feeding on B5; but in BPH feeding on MH63, this gene was inducible and its expression reached a maximum level at 24 h, and then decreased slightly. The expression of NQO gene was enhanced in BPH on B5 plants but showed a constant expression in BPH on MH63 plants. No difference in ACE gene expression among BPH on different rice plants was detected by the RT-PCR method. The results suggest these genes may play important roles in the defense response of BPH to resistant rice.

  5. Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice.

    Science.gov (United States)

    Qin, Xue; Liu, Jun Hua; Zhao, Wen Sheng; Chen, Xu Jun; Guo, Ze Jian; Peng, You Liang

    2013-02-01

    Gibberellin (GA) 20-oxidase (GA20ox) catalyses consecutive steps of oxidation in the late part of the GA biosynthetic pathway. A T-DNA insertion mutant (17S-14) in rice, with an elongated phenotype, was isolated. Analysis of the flanking sequences of the T-DNA insertion site revealed that an incomplete T-DNA integration resulted in enhanced constitutively expression of downstream OsGA20ox3 in the mutant. The accumulation of bioactive GA(1) and GA(4) were increased in the mutant in comparison with the wild-type plant. Transgenic plants overexpressing OsGA20ox3 showed phenotypes similar to those of the 17S-14 mutant, and the RNA interference (RNAi) lines that had decreased OsGA20ox3 expression exhibited a semidwarf phenotype. Expression of OsGA20ox3 was detected in the leaves and roots of young seedlings, immature panicles, anthers, and pollens, based on β-glucuronidase (GUS) activity staining in transgenic plants expressing the OsGA20ox3 promoter fused to the GUS gene. The OsGA20ox3 RNAi lines showed enhanced resistance against rice pathogens Magnaporthe oryzae (causing rice blast) and Xanthomonas oryzae pv. oryzae (causing bacterial blight) and increased expression of defense-related genes. Conversely, OsGA20ox3-overexpressing plants were more susceptible to these pathogens comparing with the wild-type plants. The susceptibility of wild-type plants to X. oryzae pv. oryzae was increased by exogenous application of GA(3) and decreased by S-3307 treatment. Together, the results provide direct evidence for a critical role of OsGA20ox3 in regulating not only plant stature but also disease resistance in rice.

  6. Diversity of some endophytic fungi associated with rice black bug Paraeucosmetus pallicornis on rice plant

    OpenAIRE

    Nur, Amin; La Daha; Nurariaty, Agus; Ade, Rosmana; Muh., Fadlan

    2015-01-01

    A new rice insect pest was sighted in some rice producing areas of South Sulawesi Province, Indonesia. This pest is rice black bugs Paraeucosmetus pallicornis. The research aimed to isolation of fungi associated with rice black bugs Paraeucosmetus pallicornis, so as to know the cause of a bitter taste to the rice. The isolation of the fungi consist of three kinds of treatment, namely rice black bugs without sterilization, with sterilization and rice black bugs cut and sterilized. The resul...

  7. Interaction between sulfur and lead in toxicity, iron plaque formation and lead accumulation in rice plant.

    Science.gov (United States)

    Yang, Junxing; Liu, Zhiyan; Wan, Xiaoming; Zheng, Guodi; Yang, Jun; Zhang, Hanzhi; Guo, Lin; Wang, Xuedong; Zhou, Xiaoyong; Guo, Qingjun; Xu, Ruixiang; Zhou, Guangdong; Peters, Marc; Zhu, Guangxu; Wei, Rongfei; Tian, Liyan; Han, Xiaokun

    2016-06-01

    Human activities have resulted in lead and sulfur accumulation in paddy soils in parts of southern China. A combined soil-sand pot experiment was conducted to investigate the influence of S supply on iron plaque formation and Pb accumulation in rice (Oryza sativa L.) under two Pb levels (0 and 600 mg kg(-1)), combined with four S concentrations (0, 30, 60, and 120 mg kg(-1)). Results showed that S supply significantly decreased Pb accumulation in straw and grains of rice. This result may be attributed to the enhancement of Fe plaque formation, decrease of Pb availability in soil, and increase of reduced glutathione (GSH) in rice leaves. Moderate S supply (30 mg kg(-1)) significantly increased Fe plaque formation on the root surface and in the rhizosphere, whereas excessive S supply (60 and 120 mg kg(-1)) significantly decreased the amounts of iron plaque on the root surface. Sulfur supply significantly enhanced the GSH contents in leaves of rice plants under Pb treatment. With excessive S application, the rice root acted as a more effective barrier to Pb accumulation compared with iron plaque. Excessive S supply may result in a higher monosulfide toxicity and decreased iron plaque formation on the root surface during flooded conditions. However, excessive S supply could effectively decrease Pb availability in soils and reduce Pb accumulation in rice plants. Copyright © 2016 Elsevier Inc. All rights reserved.

  8. Influence of iron plaque on uptake and accumulation of Cd by rice (Oryza sativa L.) seedlings grown in soil.

    Science.gov (United States)

    Liu, Houjun; Zhang, Junling; Christie, Peter; Zhang, Fusuo

    2008-05-15

    Iron plaque is ubiquitously formed on the root surfaces of rice. However, little is known about the role of iron plaque in Cd movement from soil to the plant aboveground parts. A pot experiment was conducted to investigate the influence of iron plaque in Cd uptake and accumulation by rice seedlings in soil. Rice seedlings were pre-cultivated in solution culture for 16 days. Two seedlings were transplanted in a nylon bag containing no substrate but surrounded by soil amended with Fe and Cd combined at rates of 0, 1, or 2 g Fe kg(-1) and 0, 2.0, or 10 mg Cd kg(-1) soil. Fe was added to induce different amounts of iron plaque, and Cd to simulate Cd-polluted soils. Plants were grown for a further 43 days and then harvested. The length of the longest leaf and SPAD values of the newly mature leaves were measured during plant growth. Fe and Cd concentrations were determined in dithionite-citrate-bicarbonate (DCB) soil extracts and in plant roots and shoots. Shoot and root dry weights were significantly affected by Fe supply level but not by added Cd. Root dry weight declined with increasing Fe supply but shoot dry weight decreased at 2 g Fe kg(-1) and increased at 1 g Fe kg(-1) (except at 2 mg Cd kg(-1)). The length of the longest leaf and SPAD values of the newly mature leaves were significantly affected by plant growth stage and added Fe and Cd. Fe tended to diminish the negative effect of Cd on these two parameters. Cd concentrations in DCB extracts increased with increasing Cd and Fe supply. In contrast, external Fe supply markedly reduced shoot and root Cd concentrations and there was generally no significant difference between the two Fe supply levels. Shoot and root Cd concentrations increased with increasing Cd addition. Root Cd concentrations were negatively correlated with root Fe concentrations. The proportion of Cd in DCB extracts was significantly lower than in roots or shoots. The results indicate that enhanced Fe uptake by plants can diminish the negative

  9. Distribution of 14C in soil and rice plants following application of 14C - parathion to soil

    International Nuclear Information System (INIS)

    Andrea, M.M. de; Ruegg, E.F.

    1983-01-01

    Amount of residues of 14 C-parathion in soil rice plants after application of the insecticide to soil were determined in four systems studied during five weeks: pots of soil with and without plants and open or enclosed by a transparent cover. Measurements of amounts volatilized and 14 CO 2 evolution from the pesticide were made in closed system without plants. The bound residues in soil and plants were also determined. Results indicated that parathion half life in a Gley Humic soil was about two weeks. Very little radiocarbon was taken up by rice plants; of this, more was found in shoots of plants enclosed, probably by collection of the volatilized material by plants. About 6% and 4% of the 14 C-parathion were found as volatilized material and 14 CO 2 , respectively after five weeks. Bound residues varied very little and reached a maximum of 22% in soil and in plants amounted to less than 2% at the final of the experiment. (Author) [pt

  10. EFFECT OF COVER CROPS ON SOIL ATTRIBUTES, PLANT NUTRITION, AND IRRIGATED TROPICAL RICE YIELD

    Directory of Open Access Journals (Sweden)

    ANDRE FROES DE BORJA REIS

    2017-01-01

    Full Text Available In flood plains, cover crops are able to alter soil properties and significantly affect rice nutrition and yield. The aims of this study were to determine soil properties, plant nutrition, and yield of tropical rice cultivated on flood plains after cover crop cultivation with conventional tillage (CT and no-tillage system (NTS at low and high nitrogen (N fertilization levels. The experimental design was a randomized block in a split-split-plot scheme with four replications. In the main plots were cover crops sunhemp (Crotalaria juncea and C. spectabilis, velvet bean (Mucuna aterrima, jackbean (Canavalia ensiformis, pigeon pea (Cajanus cajan, Japanese radish (Raphanus sativus, cowpea (Vigna unguiculata and a fallow field. In the subplots were the tillage systems (CT or NTS. The nitrogen fertilization levels in the sub-subplots were (10 kg N ha-1 and 45 kg N ha-1. All cover crops except Japanese radish significantly increased mineral soil nitrogen and nitrate concentrations. Sunhemp, velvet bean, and cowpea significantly increased soil ammonium content. The NTS provides higher mineral nitrogen and ammonium content than that by CT. Overall, cover crops provided higher levels of nutrients to rice plants in NTS than in CT. Cover crops provide greater yield than fallow treatments. Rice yield was higher in NTS than in CT, and greater at a higher rather than lower nitrogen fertilization level.

  11. Geochemical patterns and microbial contribution to iron plaque formation in the rice plant rhizosphere

    Science.gov (United States)

    Maisch, Markus; Murata, Chihiro; Unger, Julia; Kappler, Andreas; Schmidt, Caroline

    2015-04-01

    Rice is the major food source for more than half of the world population and 80 percent of the worldwide rice cultivation is performed on water logged paddy soils. The establishment of reducing conditions in the soil and across the soil-water interface not only stimulates the microbial production and release of the greenhouse gas methane. These settings also create optimal conditions for microbial iron(III) reduction and therefore saturate the system with reduced ferrous iron. Through the reduction and dissolution of ferric minerals that are characterized by their high surface activity, sorbed nutrients and contaminants (e.g. arsenic) will be mobilized and are thus available for uptake by plants. Rice plants have evolved a strategy to release oxygen from their roots in order to prevent iron toxification in highly ferrous environments. The release of oxygen to the reduced paddy soil causes ferric iron plaque formation on the rice roots and finally increases the sorption capacity for toxic metals. To this date the geochemical and microbiological processes that control the formation of iron plaque are not deciphered. It has been hypothesized that iron(II)-oxidizing bacteria play a potential role in the iron(III) mineral formation along the roots. However, not much is known about the actual processes, mineral products, and geochemical gradients that establish within the rhizosphere. In the present study we have developed a growth set-up that allows the co-cultivation of rice plants and iron(II)-oxidizing bacteria, as well as the visual observation and in situ measurement of geochemical parameters. Oxygen and dissolved iron(II) gradients have been measured using microelectrodes and show geochemical hot spots that offer optimal growth conditions for microaerophilic iron(II) oxidizers. First mineral identification attempts of iron plaque have been performed using Mössbauer spectroscopy and microscopy. The obtained results on mineraology and crystallinity have been

  12. Interactive Effects of Southern Rice Black-Streaked Dwarf Virus Infection of Host Plant and Vector on Performance of the Vector, Sogatella furcifera (Homoptera: Delphacidae).

    Science.gov (United States)

    Lei, Wenbin; Liu, Danfeng; Li, Pei; Hou, Maolin

    2014-10-01

    Performance of insect vectors can be influenced by the viruses they transmit, either directly by infection of the vectors or indirectly via infection of the host plants. Southern rice black-streaked dwarf virus (SRBSDV) is a propagative virus transmitted by the white-backed planthopper, Sogatella furcifera (Hovath). To elucidate the influence of SRBSDV on the performance of white-backed planthopper, life parameters of viruliferous and nonviruliferous white-backed planthopper fed rice seedlings infected or noninfected with SRBSDV were measured using a factorial design. Regardless of the infection status of the rice plant host, viruliferous white-backed planthopper nymphs took longer to develop from nymph to adult than did nonviruliferous nymphs. Viruliferous white-backed planthopper females deposited fewer eggs than nonviruliferous females and both viruliferous and nonviruliferous white-backed planthopper females laid fewer eggs on infected than on noninfected plants. Longevity of white-backed planthopper females was also affected by the infection status of the rice plant and white-backed planthopper. Nonviruliferous white-backed planthopper females that fed on infected rice plants lived longer than the other three treatment groups. These results indicate that the performance of white-backed planthopper is affected by SRBSDV either directly (by infection of white-backed planthopper) or indirectly (by infection of rice plant). The extended development of viruliferous nymphs and the prolonged life span of nonviruliferous adults on infected plants may increase their likelihood of transmitting virus, which would increase virus spread. © 2014 Entomological Society of America.

  13. Nitrogen and azolla response on growth of rice plant of Mitra-I variety with SRI method

    International Nuclear Information System (INIS)

    Nurmayulis; Putra Utama; Dewi Firnia; Hasnan Yani; Ania Citraresmini

    2011-01-01

    The research was conducted in Cisadap, Bunter Village, District of Sukadana, Ciamis Regency, West Java Province from January to May 2011. This study was carried out to know the response of growth of rice plant which was fertilized by nitrogen fertilizer and Azolla michrophylla using the system of rice intensification. This research used five dozes of nitrogen fertilizer (0 %, 25 %, 50 %, 75 %, 100 %) from N 92 kg ha -1 as a recommended nitrogen fertilizer (urea 200 kg ha -1 ), and also 1,13 ton ha -1 Azolla michrophylla. The result obtained from this research showed that the application of N fertilizer at 50 % of the recommend dose (100 kg ha -1 ) with adding Azolla at a rate of 1.13 t ha -1 gave good result in the terms of plant height at 2-6 weeks after planting and number of tillers at 2-7 weeks after planting. Interaction of the 50 % N fertilizer from the recommended dose planting 1,13 t ha -1 give the highest dry weight of Azolla of plants at seven weeks after planting. (author)

  14. Chinese Milk Vetch Improves Plant Growth, Development and 15N Recovery in the Rice-Based Rotation System of South China.

    Science.gov (United States)

    Xie, Zhijian; He, Yaqin; Tu, Shuxin; Xu, Changxu; Liu, Guangrong; Wang, Huimin; Cao, Weidong; Liu, Hui

    2017-06-15

    Chinese milk vetch (CMV) is vital for agriculture and environment in China. A pot experiment combined with 15 N labeling (including three treatments: control, no fertilizer N and CMV; 15 N-labeled urea alone, 15 NU; substituting partial 15 NU with CMV, 15 NU-M) was conducted to evaluate the impact of CMV on plant growth, development and 15 NU recovery in rice-based rotation system. The 15 NU-M mitigated oxidative damage by increasing antioxidant enzymes activities and chlorophyll content while decreased malondialdehyde content in rice root and shoot, increased the biomass, total N and 15 N uptake of plant shoots by 8%, 12% and 39% respectively, thus inducing a noticeable increase of annual 15 N recovery by 77% versus 15 NU alone. Remarkable increases in soil NH 4 + and populations of bacteria, actinomycetes and azotobacter were obtained in legume-rice rotation system while an adverse result was observed in soil NO 3 - content versus fallow-rice. CMV as green manure significantly increased the fungal population which was decreased with cultivating CMV as cover crop. Therefore, including legume cover crop in rice-based rotation system improves plant growth and development, annual N conservation and recovery probably by altering soil nitrogen forms plus ameliorating soil microbial communities and antioxidant system which alleviates oxidative damages in plants.

  15. OsPIN5b modulates rice (Oryza sativa) plant architecture and yield by changing auxin homeostasis, transport and distribution.

    Science.gov (United States)

    Lu, Guangwen; Coneva, Viktoriya; Casaretto, José A; Ying, Shan; Mahmood, Kashif; Liu, Fang; Nambara, Eiji; Bi, Yong-Mei; Rothstein, Steven J

    2015-09-01

    Plant architecture attributes such as tillering, plant height and panicle size are important agronomic traits that determine rice (Oryza sativa) productivity. Here, we report that altered auxin content, transport and distribution affect these traits, and hence rice yield. Overexpression of the auxin efflux carrier-like gene OsPIN5b causes pleiotropic effects, mainly reducing plant height, leaf and tiller number, shoot and root biomass, seed-setting rate, panicle length and yield parameters. Conversely, reduced expression of OsPIN5b results in higher tiller number, more vigorous root system, longer panicles and increased yield. We show that OsPIN5b is an endoplasmic reticulum (ER) -localized protein that participates in auxin homeostasis, transport and distribution in vivo. This work describes an example of an auxin-related gene where modulating its expression can simultaneously improve plant architecture and yield potential in rice, and reveals an important effect of hormonal signaling on these traits. © 2015 The Authors The Plant Journal © 2015 John Wiley & Sons Ltd.

  16. Evidence for Non-Transmission of Rice Yellow Mottle Virus (RYMV through Rice Seed

    Directory of Open Access Journals (Sweden)

    Sy, AA.

    2004-01-01

    Full Text Available An indexing of the organs (radicle and plumule and components (husk, endosperm and embryo of rice seeds using Enzyme Linked Immunosorbent Assay (ELISA was carried out to detect Rice yellow mottle virus (RYMV and establish the exact location of the virus in the rice seed. RYMV was detected only in the husk (seed coat but not in the endosperm, plumule, radicle, nor embryo. None of the seedlings raised from the seeds expressed RYMV symptoms. No virus particle was detected by the ELISA test in the leaves of the screenhouse-reared plants obtained from seeds of infected plants. The results indicate that RYMV is apparently not transmitted through rice seed probably because the virus is seed-borne in the husk (seed coat of mature rice seeds.

  17. Cell fusion as a tool for rice improvement

    Energy Technology Data Exchange (ETDEWEB)

    Hayashi, Y; Kyozuka, J; Terada, R; Nishibayashi, S; Shimamoto, K [Plantech Research Institute, Kamoshida, Midori-ku, Yokohama (Japan)

    1990-01-01

    Full text: Cell fusion offers a unique opportunity to hybridize sexually incompatible species and to mix cytoplasmic genomes in higher plants. Recent progress in plant regeneration from rice protoplasts facilitates an evaluation of the cell fusion method for rice improvement. By using electrofusion of protoplasts, we obtained hybrid/cybrid plants of the following combinations: Hybrids of rice x barnyard grass (E. oryzicola); Hybrids of rice x wild Oryza species; Cybrids of rice with transferred cms cytoplasm. For the latter, protoplasts irradiated with 70 krad x-rays were used. (author)

  18. Effect of Interplanting with Zero Tillage and Straw Manure on Rice Growth and Rice Quality

    Directory of Open Access Journals (Sweden)

    Shi-ping LIU

    2007-09-01

    Full Text Available The interplanting with zero-tillage of rice, i.e. direct sowing rice 10–20 days before wheat harvesting, and remaining about 30-cm high stubble after cutting wheat or rice with no tillage, is a new cultivation technology in wheat-rice rotation system. To study the effects of interplanting with zero tillage and straw manure on rice growth and quality, an experiment was conducted in a wheat-rotation rotation system. Four treatments, i.e. ZIS (Zero-tillage, straw manure and rice interplanting, ZI (Zero-tillage, no straw manure and rice interplanting, PTS (Plowing tillage, straw manure and rice transplanting, and PT (Plowing tillage, no straw manure and rice transplanting, were used. ZIS reduced plant height, leaf area per plant and the biomass of rice plants, but the biomass accumulation of rice at the late stage was quicker than that under conventional transplanting cultivation. In the first year (2002, there was no significant difference in rice yield among the four treatments. However, rice yield decreased in interplanting with zero-tillage in the second year (2003. Compared with the transplanting treatments, the number of filled grains per panicle decreased but 1000-grain weight increased in interplanting with zero-tillage, which were the main factors resulting in higher yield. Interplanting with zero-tillage improved the milling and appearance qualities of rice. The rates of milled and head rice increased while chalky rice rate and chalkiness decreased in interplanting with zero-tillage. Zero-tillage and interplanting also affected rice nutritional and cooking qualities. In 2002, ZIS showed raised protein content, decreased amylose content, softer gel consistency, resulting in improved rice quality. In 2003, zero-tillage and interplanting decreased protein content and showed similar amylose content as compared with transplanting treatments. Moreover, protein content in PTS was obviously increased in comparison with the other three treatments

  19. Increased fitness of rice plants to abiotic stress via habitat adapted symbiosis: a strategy for mitigating impacts of climate change.

    Directory of Open Access Journals (Sweden)

    Regina S Redman

    Full Text Available Climate change and catastrophic events have contributed to rice shortages in several regions due to decreased water availability and soil salinization. Although not adapted to salt or drought stress, two commercial rice varieties achieved tolerance to these stresses by colonizing them with Class 2 fungal endophytes isolated from plants growing across moisture and salinity gradients.Plant growth and development, water usage, ROS sensitivity and osmolytes were measured with and without stress under controlled conditions.The endophytes conferred salt, drought and cold tolerance to growth chamber and greenhouse grown plants. Endophytes reduced water consumption by 20-30% and increased growth rate, reproductive yield, and biomass of greenhouse grown plants. In the absence of stress, there was no apparent cost of the endophytes to plants, however, endophyte colonization decreased from 100% at planting to 65% compared to greenhouse plants grown under continual stress (maintained 100% colonization.These findings indicate that rice plants can exhibit enhanced stress tolerance via symbiosis with Class 2 endophytes, and suggest that symbiotic technology may be useful in mitigating impacts of climate change on other crops and expanding agricultural production onto marginal lands.

  20. Increased fitness of rice plants to abiotic stress via habitat adapted symbiosis: a strategy for mitigating impacts of climate change.

    Science.gov (United States)

    Redman, Regina S; Kim, Yong Ok; Woodward, Claire J D A; Greer, Chris; Espino, Luis; Doty, Sharon L; Rodriguez, Rusty J

    2011-01-01

    Climate change and catastrophic events have contributed to rice shortages in several regions due to decreased water availability and soil salinization. Although not adapted to salt or drought stress, two commercial rice varieties achieved tolerance to these stresses by colonizing them with Class 2 fungal endophytes isolated from plants growing across moisture and salinity gradients.Plant growth and development, water usage, ROS sensitivity and osmolytes were measured with and without stress under controlled conditions.The endophytes conferred salt, drought and cold tolerance to growth chamber and greenhouse grown plants. Endophytes reduced water consumption by 20-30% and increased growth rate, reproductive yield, and biomass of greenhouse grown plants. In the absence of stress, there was no apparent cost of the endophytes to plants, however, endophyte colonization decreased from 100% at planting to 65% compared to greenhouse plants grown under continual stress (maintained 100% colonization).These findings indicate that rice plants can exhibit enhanced stress tolerance via symbiosis with Class 2 endophytes, and suggest that symbiotic technology may be useful in mitigating impacts of climate change on other crops and expanding agricultural production onto marginal lands.

  1. Increased fitness of rice plants to abiotic stress via habitat adapted symbiosis: A strategy for mitigating impacts of climate change

    Science.gov (United States)

    Redman, R.S.; Kim, Y.-O.; Woodward, C.J.D.A.; Greer, C.; Espino, L.; Doty, S.L.; Rodriguez, R.J.

    2011-01-01

    Climate change and catastrophic events have contributed to rice shortages in several regions due to decreased water availability and soil salinization. Although not adapted to salt or drought stress, two commercial rice varieties achieved tolerance to these stresses by colonizing them with Class 2 fungal endophytes isolated from plants growing across moisture and salinity gradients. Plant growth and development, water usage, ROS sensitivity and osmolytes were measured with and without stress under controlled conditions. The endophytes conferred salt, drought and cold tolerance to growth chamber and greenhouse grown plants. Endophytes reduced water consumption by 20–30% and increased growth rate, reproductive yield, and biomass of greenhouse grown plants. In the absence of stress, there was no apparent cost of the endophytes to plants, however, endophyte colonization decreased from 100% at planting to 65% compared to greenhouse plants grown under continual stress (maintained 100% colonization). These findings indicate that rice plants can exhibit enhanced stress tolerance via symbiosis with Class 2 endophytes, and suggest that symbiotic technology may be useful in mitigating impacts of climate change on other crops and expanding agricultural production onto marginal lands.

  2. Exogenously applied plant growth regulators enhance the morpho-physiological growth and yield of rice under high temperature

    Directory of Open Access Journals (Sweden)

    Shah Fahad

    2016-08-01

    Full Text Available A two-year experiment was conducted to ascertain the effects of exogenously applied plant growth regulators (PGR on rice growth and yield attributes under high day (HDT and high night temperature (HNT. Two rice cultivars (IR-64 and Huanghuazhan were subjected to temperature treatments in controlled growth chambers and four different combinations of ascorbic acid (Vc, alpha-tocopherol (Ve, brassinosteroids (Br, methyl jasmonates (MeJA and triazoles (Tr were applied. High temperature severely affected rice morphology, and also reduced leaf area, above- and below-ground biomass, photosynthesis, and water use efficiency, while increased the leaf water potential of both rice cultivars. Grain yield and its related attributes except number of panicles, were reduced under high temperature. The HDT posed more negative effects on rice physiological attributes, while HNT was more detrimental for grain formation and yield. The Huanghuazhan performed better than IR-64 under high temperature stress with better growth and higher grain yield. Exogenous application of PGRs was helpful in alleviating the adverse effects of high temperature. Among PGR combinations, the Vc+Ve+MejA+Br was the most effective treatment for both cultivars under high temperature stress. The highest grain production by Vc+Ve+MejA+Br treated plants was due to enhanced photosynthesis, spikelet fertility and grain filling, which compensated the adversities of high temperature stress. Taken together, these results will be of worth for further understanding the adaptation and survival mechanisms of rice to high temperature and will assist in developing heat-resistant rice germplasm in future.

  3. Influence of pH of acid irrigation water on the transfer of elements into rice plant from soils

    International Nuclear Information System (INIS)

    Maeno, Tomokazu; Tanizaki, Yoshiyuki

    1996-01-01

    Rice plant samples were grown in 14 cultivative pots under six different pH conditions of acid irrigation water (pH: 6.5, 6.0, 4.5, 3.5, 3.0. 2.5) and ion exchange water (pH: 7.5), in order to study an influence of pH of irrigation water on the transfer of elements into rice plant from soils. The acid irrigation water was prepared by adding mixed solution of 1N H 2 SO 4 and 1N HNO 3 (1:1) to ion exchange water. The rice grain yielded was separated into three parts, i.e., polished rice, bran and chaff and they were powdered one by one. The contents of twenty five elements in the three parts of grain (14 samples each) were determined by a neutron activation analysis. It was clarified that the contents of Cu, Zn, Fe, Cr, Mg, Rb, Mo, Ni, and Cs in the polished rice increased with decreasing pH of the acid irrigation water. The contents of Se and Br, on the contrary, decreased. Significant changes of the contents were not observed for Na, Al, Sc, Mn, Cl, Ca, V and Co. The relationships between the contents of elements in the bran or chaff and pH of the acid irrigation water were not so clear as the case of polished rice. The enrichment factor of trace elements from soils was calculated for the polished rice, bran and chaff The high enrichment of Cl, Mo, Zn, Se and Cu was observed in the polished rice. Manganese and Cr were concentrated more in the bran than in the polished rice. (author)

  4. Improving Lowland Rice (O. sativa L. cv. MR219 Plant Growth Variables, Nutrients Uptake, and Nutrients Recovery Using Crude Humic Substances

    Directory of Open Access Journals (Sweden)

    Perumal Palanivell

    2015-01-01

    Full Text Available High cation exchange capacity and organic matter content of crude humic substances from compost could be exploited to reduce ammonia loss from urea and to as well improve rice growth and soil chemical properties for efficient nutrients utilization in lowland rice cultivation. Close-dynamic air flow system was used to determine the effects of crude humic substances on ammonia volatilization. A pot experiment was conducted to determine the effects of crude humic substances on rice plant growth, nutrients uptake, nutrients recovery, and soil chemical properties using an acid soil mixed with three rates of crude humic substances (20, 40, and 60 g pot−1. Standard procedures were used to evaluate rice plant dry matter production, nutrients uptake, nutrients recovery, and soil chemical properties. Application of crude humic substances increased ammonia volatilization. However, the lowest rate of crude humic substances (20 g pot−1 significantly improved total dry matter, nutrients uptake, nutrients recovery, and soil nutrients availability compared with crude humic substances (40 and 60 g pot−1 and the normal fertilization. Apart from improving growth of rice plants, crude humic substances can be used to ameliorate acid soils in rice cultivation. The findings of this study are being validated in our ongoing field trials.

  5. Improving Lowland Rice (O. sativa L. cv. MR219) Plant Growth Variables, Nutrients Uptake, and Nutrients Recovery Using Crude Humic Substances.

    Science.gov (United States)

    Palanivell, Perumal; Ahmed, Osumanu Haruna; Ab Majid, Nik Muhamad; Jalloh, Mohamadu Boyie; Susilawati, Kasim

    2015-01-01

    High cation exchange capacity and organic matter content of crude humic substances from compost could be exploited to reduce ammonia loss from urea and to as well improve rice growth and soil chemical properties for efficient nutrients utilization in lowland rice cultivation. Close-dynamic air flow system was used to determine the effects of crude humic substances on ammonia volatilization. A pot experiment was conducted to determine the effects of crude humic substances on rice plant growth, nutrients uptake, nutrients recovery, and soil chemical properties using an acid soil mixed with three rates of crude humic substances (20, 40, and 60 g pot(-1)). Standard procedures were used to evaluate rice plant dry matter production, nutrients uptake, nutrients recovery, and soil chemical properties. Application of crude humic substances increased ammonia volatilization. However, the lowest rate of crude humic substances (20 g pot(-1)) significantly improved total dry matter, nutrients uptake, nutrients recovery, and soil nutrients availability compared with crude humic substances (40 and 60 g pot(-1)) and the normal fertilization. Apart from improving growth of rice plants, crude humic substances can be used to ameliorate acid soils in rice cultivation. The findings of this study are being validated in our ongoing field trials.

  6. Risk assessment and vertical distribution of thallium in paddy soils and uptake in rice plants irrigated with acid mine drainage.

    Science.gov (United States)

    Huang, Xuexia; Li, Ning; Wu, Qihang; Long, Jianyou; Luo, Dinggui; Zhang, Ping; Yao, Yan; Huang, Xiaowu; Li, Dongmei; Lu, Yayin; Liang, Jianfeng

    2016-12-01

    The objective of this paper is to assess the influence of irritating paddy fields with acid mine drainage containing thallium (Tl) to rice plant-soil system and potential health risks for local residents. Vertical distribution of Tl, pH, organic matter (OM), and cation exchange capacity (CEC) in 24 paddy soil profiles around Yunfu pyrite mine area was investigated. Rice plant samples were collected from the corresponding soil sampling site. The results showed that Tl concentrations in paddy soils at 0-60 cm depth range from 3.07 to 9.42 mg kg -1 , with a mean of 5.74 mg kg -1 , which were significantly higher than the background value of soil in China (0.58 mg kg -1 ). On the whole, Tl contents in paddy soil profiles increased quickly with soil depth from 0 to 30 cm and decreased slowly with soil depth from 30 to 60 cm. The soil Tl content was significant negatively correlated with soil pH. The mean content of Tl in the root, stem, leaf, and rice was 4.36, 1.83, 2.74, and 1.42 mg kg -1 , respectively, which exceeded the proposed permissible limits for foods and feedstuffs in Germany. The Tl content in various tissues of the rice plants followed the order root > leaf > stem (rice), which suggested that most Tl taken up by rice plants retained in the root, and a little migrated to the leaf, stem, and rice. Correlation analysis showed that Tl content in root was significant positively correlated with Tl content in leaf and rice. The ranges of hazard quotient (HQ) values were 4.08∼24.50 and 3.84∼22.38 for males and females, respectively. Males have higher health risk than females in the same age group. In childhood age groups (2 to <21 years) and adult age groups (21 to <70 years), the highest health risk level was observed in the 11 to 16 age group and 21 to 50 age group, respectively. The findings indicated that regular irrigation with Tl-bearing acid mine drainage led to considerable contamination of Tl in paddy soil and rice plant. Local government

  7. A comprehensive crop genome research project: the Superhybrid Rice Genome Project in China.

    Science.gov (United States)

    Yu, Jun; Wong, Gane Ka-Shu; Liu, Siqi; Wang, Jian; Yang, Huanming

    2007-06-29

    In May 2000, the Beijing Institute of Genomics formally announced the launch of a comprehensive crop genome research project on rice genomics, the Chinese Superhybrid Rice Genome Project. SRGP is not simply a sequencing project targeted to a single rice (Oryza sativa L.) genome, but a full-swing research effort with an ultimate goal of providing inclusive basic genomic information and molecular tools not only to understand biology of the rice, both as an important crop species and a model organism of cereals, but also to focus on a popular superhybrid rice landrace, LYP9. We have completed the first phase of SRGP and provide the rice research community with a finished genome sequence of an indica variety, 93-11 (the paternal cultivar of LYP9), together with ample data on subspecific (between subspecies) polymorphisms, transcriptomes and proteomes, useful for within-species comparative studies. In the second phase, we have acquired the genome sequence of the maternal cultivar, PA64S, together with the detailed catalogues of genes uniquely expressed in the parental cultivars and the hybrid as well as allele-specific markers that distinguish parental alleles. Although SRGP in China is not an open-ended research programme, it has been designed to pave a way for future plant genomics research and application, such as to interrogate fundamentals of plant biology, including genome duplication, polyploidy and hybrid vigour, as well as to provide genetic tools for crop breeding and to carry along a social burden-leading a fight against the world's hunger. It began with genomics, the newly developed and industry-scale research field, and from the world's most populous country. In this review, we summarize our scientific goals and noteworthy discoveries that exploit new territories of systematic investigations on basic and applied biology of rice and other major cereal crops.

  8. Mutant-inducing effect of γ-ray irradiation for hybrid rice F1 derived from cross of black glutinous rice x wild rice

    International Nuclear Information System (INIS)

    Mao Dezhi; Tang Yilan

    1998-01-01

    The hybrid rice F 1 plant derived from the back crossing of glutinous rice x wild rice was irradiated with γ-ray. The result of investigation to the induced mutant showed that through the selection and backcross, a black glutinous rice strain with the short stem, cold tolerance and high yield was developed. The analysis of the ability of heredity variance showed that the selection was effective for the husk colour, black glutinous and black Indica rice, but ineffective for the white Indica rice and seed setting

  9. The analysis of residual monocrotophos in rice plants

    International Nuclear Information System (INIS)

    Santiago, E.C.

    1992-01-01

    The procedure of Ambrus et al. (2.3) for extraction and clean up was modified to apply specifically to the extraction of monocrotophos in rice plant for determination by gas chromatography using flame photometric detector. An effective clean up system was developed to remove unwanted substances as well as to separate monocrotophos from other organic phosphate pesticides that interfere in the determination. The extraction utilized acetone/methylene chloride with recovery ranging from 41-53% for standards, while clean up recovery averaged 94% for standards or an overall percentage recovery of 41-55%. (auth.). 5 refs.; 5 tabs.; 5 figs

  10. Exergetic analysis of a steam power plant using coal and rice straw in a co-firing process

    Energy Technology Data Exchange (ETDEWEB)

    Restrepo, Alvaro; Miyake, Raphael Guardini; Bazzo, Edson [Federal University of Santa Catarina (UFSC), Dept. of Mechanical Engineering, Florianopolis, SC (Brazil)], e-mails: arestrep@labcet.ufsc.br, miyake@labcet.ufsc.br, ebazzo@emc.ufsc.br; Bzuneck, Marcelo [Tractebel Energia S.A., Capivari de Baixo, SC (Brazil). U.O. Usina Termeletrica Jorge Lacerda C.], e-mail: marcelob@tractebelenergia.com.br

    2010-07-01

    This paper presents an exergetic analysis concerning an existing 50 M We steam power plant, which operates with pulverized coal from Santa Catarina- Brazil. In this power plant, a co-firing rice straw is proposed, replacing up to 10% of the pulverized coal in energy basis required for the boiler. Rice straw has been widely regarded as an important source for bio-ethanol, animal feedstock and organic chemicals. The use of rice straw as energy source for electricity generation in a co-firing process with low rank coal represents a new application as well as a new challenge to overcome. Considering both scenarios, the change in the second law efficiency, exergy destruction, influence of the auxiliary equipment and the greenhouse gases emissions such as CO{sub 2} and SO{sub 2} were considered for analysis. (author)

  11. Precise plant height monitoring and biomass estimation with Terrestrial Laser Scanning in paddy rice

    Directory of Open Access Journals (Sweden)

    N. Tilly

    2013-10-01

    Full Text Available Optimizing crop management is a major topic in the field of precision agriculture as the growing world population puts pressure on the efficiency of field production. Accordingly, methods to measure plant parameters with the needed precision and within-field resolution are required. Studies show that Terrestrial Laser Scanning (TLS is a suitable method to capture small objects like crop plants. In this contribution, the results of multi-temporal surveys on paddy rice fields with the TLS system Riegl LMS-Z420i are presented. Three campaigns were carried out during the key vegetative stage of rice plants in the growing period 2012 to monitor the plant height. The TLS-derived point clouds are interpolated to visualize plant height above ground as crop surface models (CSMs with a high resolution of 0.01 m. Spatio-temporal differences within the data of one campaign and between consecutive campaigns can be detected. The results were validated against manually measured plant heights with a high correlation (R2 = 0.71. Furthermore, the dependence of actual biomass from plant height was evaluated. To the present, no method for the non-destructive determination of biomass is found yet. Thus, plant parameters, like the height, have to be used for biomass estimations. The good correlation (R2 = 0.66 leads to the assumption that biomass can be estimated from plant height measurements. The results show that TLS can be considered as a very promising tool for precision agriculture.

  12. Sustained expression of human cytomegalovirus glycoprotein B (UL55) in the seeds of homozygous rice plants.

    Science.gov (United States)

    Tackaberry, Eilleen S; Prior, Fiona A; Rowlandson, Karen; Tocchi, Monika; Mehic, Jelica; Porter, Suzanne; Walsh, Mike; Schleiss, Mark R; Ganz, Peter R; Sardana, Ravinder K; Altosaar, Illimar; Dudani, Anil K

    2008-09-01

    Production of recombinant subunit vaccines in transgenic plants may be a means of reducing vaccine costs while increasing availability and safety. A plant-derived product found safe and effective for oral administration would provide additional advantages when used as a vaccine. Outstanding issues with the technology include transgene stability through successive generations and consistent bioproduction. We previously reported expression of glycoprotein B (gB) of human cytomegalovirus in seeds of transgenic tobacco. Here the goal was to determine if gB could be similarly expressed in rice, and if so, to examine expression over several plant generations. Results show that immunoreactive gB was successfully expressed in transgenic rice seeds, with sustained expression over three generations. The gB contained several neutralizing epitopes and was stable over 27 months.

  13. The application dosage of Azolla pinnata in fresh and powder form as organic fertilizer on soil chemical properties, growth and yield of rice plant

    Science.gov (United States)

    Setiawati, Mieke Rochimi; Damayani, Maya; Herdiyantoro, Diyan; Suryatmana, Pujawati; Anggraini, Derisfha; Khumairah, Fiqriah Hanum

    2018-02-01

    The yield of rice plants is strongly influenced by N fertilizer. Nitrogen in rice plants has roles in vegetative growth, tiller formation and increasing yield through rice protein formation. Nitrogen supplied from organic fertilizers is better than inorganic fertilizers that may have environmental problem effects. Organic fertilizers from Azolla pinnata water fern contain higher N than other organic fertilizers. Symbiosis between A. pinnata and the N-fixing cyanobacteria results in high content of nitrogen, 3 to 5%. A. pinnata can be added to the rice field as organic fertilizer in form of fresh biomass or composted. Composted form can be ground into powder which passes through 100 mesh sieve. Preparation of compost powder of A. pinnata is done to reduce the constraints of voluminous application of organic fertilizers and to improve the efficiency of its use. The objective of this research was to compare the effect of the use of fresh A. pinnata and compost powder of A. pinnata on some soil and plant chemical properties and rice yield. The treatments applied were fresh A. pinnata at the dose of 0, 10 and 20 ton ha-1 and A. pinnata compost powder at 12.5 and 25 kg ha-1. The results showed that incorporation of fresh A. pinnata at 20 tons ha-1 and its compost powder at 25 kg ha-1 increased the available P of soil, plant P content and tiller number, but did not affect the content of organic-C, total soil N, plant N content and rice yield. This study suggested the benefits of A. pinnata compost powder technology in organic fertilization of soil to increase the nutrient content of soil and rice plants.

  14. Rice field for the treatment of pond aquaculture effluents | Wang ...

    African Journals Online (AJOL)

    We conducted an experiment to evaluate the efficiency of rice fields in treating pond aquaculture effluent and its responses to different fertilizer treatments. Four treatments was considered in the experiment: no rice planted as the control (CT); rice planted and no fertilizer input (RE); rice planted and a rate of approximately ...

  15. The influence of pH and organic matter content in paddy soil on heavy metal availability and their uptake by rice plants

    Energy Technology Data Exchange (ETDEWEB)

    Zeng Fanrong; Ali Shafaqat; Zhang Haitao [Department of Agronomy, College of Agriculture and Biotechnology, Huajiachi Campus, Zhejiang University, Hangzhou 310029 (China); Ouyang Younan [China National Rice Research Institute, Fuyang 310041 (China); Qiu Boyin; Wu Feibo [Department of Agronomy, College of Agriculture and Biotechnology, Huajiachi Campus, Zhejiang University, Hangzhou 310029 (China); Zhang Guoping, E-mail: zhanggp@zju.edu.c [China National Rice Research Institute, Fuyang 310041 (China)

    2011-01-15

    The experiments were done to investigate the effect of soil pH and organic matter content on EDTA-extractable heavy metal contents in soils and heavy metal concentrations in rice straw and grains. EDTA-extractable Cr contents in soils and concentrations in rice tissues were negatively correlated with soil pH, but positively correlated with organic matter content. The combination of soil pH and organic matter content would produce the more precise regression models for estimation of EDTA-Cu, Pb and Zn contents in soils, demonstrating the distinct effect of the two factors on the availability of these heavy metals in soils. Soil pH greatly affected heavy metal concentrations in rice plants. Furthermore, inclusion of other soil properties in the stepwise regression analysis improved the regression models for predicting straw Fe and grain Zn concentrations, indicating that other soil properties should be taken into consideration for precise predicting of heavy metal concentrations in rice plants. - Soil pH and organic matter content significantly affect heavy metal availability and accumulation in rice plants.

  16. Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

    Directory of Open Access Journals (Sweden)

    Li Xin

    2012-07-01

    Full Text Available Abstract Background DNA methylation plays important biological roles in plants and animals. To examine the rice genomic methylation landscape and assess its functional significance, we generated single-base resolution DNA methylome maps for Asian cultivated rice Oryza sativa ssp. japonica, indica and their wild relatives, Oryza rufipogon and Oryza nivara. Results The overall methylation level of rice genomes is four times higher than that of Arabidopsis. Consistent with the results reported for Arabidopsis, methylation in promoters represses gene expression while gene-body methylation generally appears to be positively associated with gene expression. Interestingly, we discovered that methylation in gene transcriptional termination regions (TTRs can significantly repress gene expression, and the effect is even stronger than that of promoter methylation. Through integrated analysis of genomic, DNA methylomic and transcriptomic differences between cultivated and wild rice, we found that primary DNA sequence divergence is the major determinant of methylational differences at the whole genome level, but DNA methylational difference alone can only account for limited gene expression variation between the cultivated and wild rice. Furthermore, we identified a number of genes with significant difference in methylation level between the wild and cultivated rice. Conclusions The single-base resolution methylomes of rice obtained in this study have not only broadened our understanding of the mechanism and function of DNA methylation in plant genomes, but also provided valuable data for future studies of rice epigenetics and the epigenetic differentiation between wild and cultivated rice.

  17. Overexpression of the CC-type glutaredoxin, OsGRX6 affects hormone and nitrogen status in rice plants

    Directory of Open Access Journals (Sweden)

    Ashraf eEl-Kereamy

    2015-11-01

    Full Text Available Glutaredoxins (GRXs are small glutathione dependent oxidoreductases that belong to the Thioredoxin (TRX superfamily and catalyze the reduction of disulfide bonds of their substrate proteins. Plant GRXs include three different groups based on the motif sequence, namely CPYC, CGFS and CC-type proteins. The rice CC-type proteins, OsGRX6 was identified during the screening for genes whose expression changes depending on the level of available nitrate. Overexpression of OsGRX6 in rice displayed a semi-dwarf phenotype. The OsGRX6 overexpressors contain a higher nitrogen content than the wild type, indicating that OsGRX6 plays a role in homeostatic regulation of nitrogen use. Consistent with this, OsGRX6 overexpressors displayed delayed chlorophyll degradation and senescence compared to the wild type plants. To examine if the growth defect of these transgenic lines attribute to disturbed plant hormone actions, plant hormone levels were measured. The levels of two cytokinins (CKs, 2-isopentenyladenine and trans-zeatin, and gibberellin A1 (GA1 were increased in these lines. We also found that these transgenic lines were less sensitive to exogenously applied GA, suggesting that the increase in GA1 is a result of the feedback regulation. These data suggest that OsGRX6 affects hormone signaling and nitrogen status in rice plants.

  18. Study on enhancing mutagenic efficacy by irradiating rice plant before ear differentiation

    International Nuclear Information System (INIS)

    Guo Guangrong; Yi Weiping; Chen Xuebin; Liu; Wuquan; Sun Zhiyuan

    1992-06-01

    Rice plants were irradiated externally with 60 Co γ-ray or internally with 32 P β-beam at the time just before ear differentiation. The mutation frequency, shape of mutated sector, hereditary variation of the mutant of Japonica rice, hereditary pattern of the mutant characters and the application of useful mutants were investigated. The results showed: 1. the irradiation treatment at the time before ear differentiation can greatly raise the mutation frequency. The mutation frequency in creased to 21.67% for early maturity, 11.01% for dwarfness and 12.92% for late maturity respectively (counted on the basis of ear number) under the external irradiation of 60 Co γ-ray. The mutation frequencies for early, late and dwarfness maturities irradiated internally by 32 P β-beam were 15.5%, 61.6% and 26.34% respectively (counted on the basis of grain number), or 46.87%, 91.3% and 65.22% respectively (counted on the basis of ear number). 2. Mutants, that are rarely existed, of Japonica rice were obtained. 3. The segregation of posterity for some mutant characters was not in Mendel's regularity, the relationships between dominance and recessive for some mutant characters were reversed. 4. The prospect for the application of useful mutants in the rice breeding is encouraging

  19. [Effects of fish on field resource utilization and rice growth in rice-fish coculture].

    Science.gov (United States)

    Zhang, Jian; Hu, Liang Liang; Ren, Wei Zheng; Guo, Liang; Wu, Min Fang; Tang, Jian Jun; Chen, Xin

    2017-01-01

    Rice field can provide habitat for fish and other aquatic animals. Rice-fish coculture can increase rice yield and simultaneously reduce the use of chemicals through reducing rice pest occurrence and nutrient complementary use. However, how fish uses food sources (e.g. phytoplankton, weeds, duckweed, macro-algal and snail) from rice field, and whether the nutrients releasing from those food sources due to fish transforming can improve rice growth are still unknown. Here, we conducted two field experiments to address these questions. One was to investigate the pattern of fish activity in the field using the method of video recording. The other was to examine the utilization of field resources by fish using stable isotope technology. Rice growth and rice yield were also exa-mined. Results showed that fish tended to be more active and significantly expanded the activity range in the rice-fish coculture compared to fish monoculture (fish not living together with rice plants). The contributions of 3 potential aquatic organisms (duckweed, phytoplankton and snail) to fish dietary were 22.7%, 34.8% and 30.0% respectively under rice-fish coculture without feed. Under the treatment with feed, however, the contributions of these 3 aquatic organisms to the fish die-tary were 8.9%, 5.9% and 1.6% respectively. The feed contribution was 71.0%. Rice-fish coculture significantly increased the nitrogen concentration in rice leaves, prolonged tillering stage by 10-12 days and increased rice spike rate and yield. The results suggested that raising fish in paddy field may transform the nutrients contained in field resources to bioavailable for rice plants through fish feeding activity, which can improve rice growth and rice yield.

  20. Southern rice black-streaked dwarf virus (SRBSDV) directly affects the feeding and reproduction behavior of its vector, Sogatella furcifera (Horváth) (Hemiptera: Delphacidae).

    Science.gov (United States)

    Xu, Hongxing; He, Xiaochan; Zheng, Xusong; Yang, Yajun; Tian, Junce; Lu, Zhongxian

    2014-03-24

    Southern rice black-streaked dwarf virus (SRBSDV) is a recently discovered member of the genus Fijivirus and it is transmitted by the rice whitebacked planthopper (WBPH), Sogatella furcifera (Horváth). It was found that SRBSDV infected vectors might contribute negatively to the WBPH population, although the longer nymphal period might benefit viral acquisition, transmission and increase infection rate. The interaction between SRBSDV and its vector need to be further explored to gain better understanding of the dispersal of WBPH and the spread of virus disease, in particular the feeding and reproduction behavior of viruliferous WBPH. Newly hatched nymphs of WBPH were fed on healthy rice plant after feeding on SRBSDV-infected rice plants for 2 h, and newly emerged adults were numbered and tested. Feeding behaviors of WBPH adults were monitored electronically within a Faraday cage using a Giga-4 DC EPG amplifier. The newly emerged adults were paired, and the fecundity and egg hatchability were investigated. WBPH was molecularly identified for SRBSDV when they dead. According to the identification results, data on viruliferous and non-viruliferous WBPH were collected and analyzed. Feeding behavior of viruliferous WBPH was different from those of non-viruliferous WBPH. Frequency of phloem sap ingestion of viruliferous WBPH increased significantly, however the total feeding duration did not increase markedly. When both WBPH parents were infected with SRBSDV, their fecundity and hatchability of the eggs produced were significant lower than those of normal WBPH parents. However, if only one of the parents was viruliferous, fecundity and egg hatchability were only slightly affected. Viruliferous WBPH fed on the phloem more frequently than non-viruliferous WBPH and can thus contribute to virus transmission. When both vector parents are viruliferous fecundity and hatchability of the eggs were significantly reduced. However when only one of the parents WBPH was viruliferous

  1. Comparison of the uptake and assimilation of ammonium and nitrate in Indica and Japonica rice plants using the tracer 15N method

    International Nuclear Information System (INIS)

    Ta, T.C.; Ohira, Koji

    1982-01-01

    The uptake of 15 N-labeled ammonium and nitrate and their assimilation in 4-week-old Indica and Japonica rice plants were studied during 24 hr exposure to 2 mM solutions of ( 15 NH 4 ) 2 SO 4 and/or Na 15 NO 3 . Although there was no clear difference in the uptake and assimilation of 15 NH 4+ , significant differences in the uptake and assimilation of 15 NO 3- by both varieties were observed. When NH 4+ or NO 3- was supplied exclusively, the Indica rice plants absorbed the latter more effectively than the Japonica. In addition, despite a preference for uptake of NH 4+ rather than NO 3- as shown by both varieties when both forms were supplied together, the relative amounts of NO 3- uptake by the Indica were higher than those of Japonica. On the other hand, the Indica rice plants reduced the absorbed 15 NO 3- more rapidly than the Japonica. The incorporation 15 NO 3- into the ethanol insoluble nitrogen fraction of the Indica rice also exceeded that of the Japonica. These results suggest that the Indica has the ability to utilize NO 3- as a nitrogen source more effectively than the Japonica rice plants. (author)

  2. Soil-to-plant transfer factors of stable elements and naturally occurring radionuclides. (2) Rice collected in Japan

    International Nuclear Information System (INIS)

    Uchida, Shigeo; Tagami, Keiko; Hirai, Ikuko

    2007-01-01

    The critical paths of radionuclides and the critical foods in Japan are different from those in European and North American countries because agricultural products and food customs are different. Consequently, safety assessment in Japan is required to consider rice and vegetables as the critical foods. In this study, we measured soil-to-plant transfer factors (TFs) for rice using naturally existing elements as analogues of radionuclides under equilibrium conditions. Rice and associated soil samples were collected from 50 sampling sites throughout Japan and TFs of 36 and 34 elements for brown rice and white rice, respectively, were calculated on dry weight basis. Probability distributions of TFs of elements for brown rice and white rice were a log normal type. Except for As and Mo, the TFs for brown rice were usually lower than those for wheat and barley especially for K, Fe, Sr (t-test: p 90 Sr and 137 Cs observed in field experiments. Thus, the TFs of naturally existing elements can be used as TFs of those radionuclides which have been in contact with the environment for a long time and have reached equilibrium conditions. (author)

  3. Uptake, translocation, and distribution of root-applied [C ring-U-14C]-ZJ0273 in plants of oilseed rape and rice

    International Nuclear Information System (INIS)

    Li Zheng; Han Ailiang; Zhang Yanfei; Li Juying; Wang Yue; Wang Haiyan; Ye Qingfu; Lu Long

    2009-01-01

    ZJ0273, propyl 4-(2-(4, 6-dimethoxypyrimidin-2-yloxy) benzylamino) benzoate, is a novel ALS-inhibited herbicide development for pre-and post-emergence weed control in field of oilseed rape. The comparative uptake, translocation and distribution of root-applied [C ring-U- 14 C] ZJ0273 in the plants of susceptible rice and tolerant oilseed rape were investigated under laboratory conditions. The results showed that the uptake of [C ring-U- 14 C]-ZJ0273 in both rice (Oryza sativa L.) and oilseed rape (Brassica napus L.) increased with time. Larger percentage of the applied ZJ0273 was uptaken by rice than oilseed rape at any sampling time. At 384 hours after treatment, the uptake of [C ring-U- 14 C]-ZJ0273 reached 24.1% of the applied amount in rice, while only 4.1% of the applied in oilseed rape. The majority of the absorbed ZJ0273 remained in the root of the tested plants, which indicated the weak mobility of ZJ0273 and/or its metabolites in both the plants of susceptible rice and tolerant oilseed rape. The radioactivity per unit of dry weight in the roots and leaves of rice was 9.470 Bq/mg and 0.910 Bq/mg, respectively, which was significantly higher than that in oilseed rape (3.870 Bq/mg and 0.390 Bq/mg). Therefore, the difference in the total uptake of ZJ0273 and the accumulation of ZJ0273 and/or its metabolites perunit of dry weight between rice and oilseed rape, which revealed in this study, might be one of the reasons for the different susceptibility of rice and oilseed rape on ZJ0273. (authors)

  4. Response of rice plants to heat stress during initiation of panicle primordia or grain-filling phases

    Directory of Open Access Journals (Sweden)

    Hermann Restrepo-Diaz

    2013-08-01

    Full Text Available Leaf photosynthesis, a major determinant for yield sustainability in rice, is greatly conditioned by high temperature stress during growth. The effect of short-term high temperatures on leaf photosynthesis, stomatal conductance, Fv/Fm, SPAD readings and yield characteristics was studied in two Colombian rice cultivars. Two genotypes, cv. Fedearroz 50 (F50 and cv. Fedearroz 733 (F733 were used in pot experiments with heat stress treatment (Plants were exposed to 40°C for two and half hours for five consecutive days and natural temperature (control treatment. Heat treatments were carried out at the initiation of panicle primordial (IP or grain-filling (GF phases. The results showed that short-term high temperature stress produced a reduction on the photosynthesis rate in both cultivars either IP or GF phases. Similar trends were found on stomatal conductance in all cases due to high temperatures. Although Fv/Fm and SPAD readings were not affected by high temperatures, these variables diminished significantly among phenological phases. 'F733' rice plants showed higher number spikelet sterility due to heat stress treatments. These results seem to indicate that heat-tolerant cultivars of rice is associated with high levels of photosynthesis rate in leaves.

  5. Soil to rice transfer factors for 210Pb: a study on rice grown in India

    International Nuclear Information System (INIS)

    Karunakara, N.; Rao, Chetan; Ujwal, P.; Yashodhara, I.; Sudeep Kumara; Somashekarappa, H.M.; Bhaskara Shenoy, K.; Ravi, P.M.

    2013-01-01

    India is the second largest producer of rice (Oryza sativa L.) in the world and rice is the essential component of the diet for the majority of the population of India. However, detailed studies aimed at evaluation of radionuclide transfer factors (F v ) for rice grown in India are almost non-existent. This paper presents soil to rice transfer factors for 210 Pb for rice grown in natural field conditions on the West Coast of India. A rice field was developed very close to the Kaiga nuclear power plant for the field studies. For a comparative study of radionuclide transfer factors, rice samples were also collected from the rice fields of nearby villages. The soil to un-hulled rice grain 210 Pb varied in the range <1.2 x10 -2 to 8.1 x 10 -1 with a mean of 1.4 x 10 -1 . The mean values of un-hulled grain to white rice processing retention factors (F r ) was 0.03 for 210 Pb. Using the processing retention factors the soil to white rice transfer factor was estimated and found to have the mean value of 4.2 x 10 -3 . The study has shown that the transfer of 210 Pb was retained in the root and its transfer to above ground organs of rice plant is significantly lower. (author)

  6. Autophagy supports biomass production and nitrogen use efficiency at the vegetative stage in rice.

    Science.gov (United States)

    Wada, Shinya; Hayashida, Yasukzu; Izumi, Masanori; Kurusu, Takamitsu; Hanamata, Shigeru; Kanno, Keiichi; Kojima, Soichi; Yamaya, Tomoyuki; Kuchitsu, Kazuyuki; Makino, Amane; Ishida, Hiroyuki

    2015-05-01

    Much of the nitrogen in leaves is distributed to chloroplasts, mainly in photosynthetic proteins. During leaf senescence, chloroplastic proteins, including Rubisco, are rapidly degraded, and the released nitrogen is remobilized and reused in newly developing tissues. Autophagy facilitates the degradation of intracellular components for nutrient recycling in all eukaryotes, and recent studies have revealed critical roles for autophagy in Rubisco degradation and nitrogen remobilization into seeds in Arabidopsis (Arabidopsis thaliana). Here, we examined the function of autophagy in vegetative growth and nitrogen usage in a cereal plant, rice (Oryza sativa). An autophagy-disrupted rice mutant, Osatg7-1, showed reduced biomass production and nitrogen use efficiency compared with the wild type. While Osatg7-1 showed early visible leaf senescence, the nitrogen concentration remained high in the senescent leaves. (15)N pulse chase analysis revealed suppression of nitrogen remobilization during leaf senescence in Osatg7-1. Accordingly, the reduction of nitrogen available for newly developing tissues in Osatg7-1 likely led its reduced leaf area and tillers. The limited leaf growth in Osatg7-1 decreased the photosynthetic capacity of the plant. Much of the nitrogen remaining in senescent leaves of Osatg7-1 was in soluble proteins, and the Rubisco concentration in senescing leaves of Osatg7-1 was about 2.5 times higher than in the wild type. Transmission electron micrographs showed a cytosolic fraction rich with organelles in senescent leaves of Osatg7-1. Our results suggest that autophagy contributes to efficient nitrogen remobilization at the whole-plant level by facilitating protein degradation for nitrogen recycling in senescent leaves. © 2015 American Society of Plant Biologists. All Rights Reserved.

  7. O-2 dynamics in the rhizosphere of young rice plants (Oryza sativa L.) as studied by planar optodes

    DEFF Research Database (Denmark)

    Larsen, Morten; Santner, Jakob; Oburger, Eva

    2015-01-01

    dynamics in the rice rhizosphere. Applying high-resolution planar optode imaging, we investigated the O-2 dynamics of plants grown in water saturated soil, as a function of ambient O-2 level, irradiance and plant development, for submerged and emerged plants. O-2 leakage was heterogeneously distributed...... with zones of intense leakage around roots tips and young developing roots. While the majority of roots exhibited high ROL others remained surrounded by anoxic soil. ROL was affected by ambient O-2 levels around the plant, as well as irradiance, indicating a direct influence of photosynthetic activity on ROL...... of the rhizosphere. The work documents that spatio-temporal measurements are important to fully understand and account for the highly variable O-2 dynamics and associated biogeochemical processes and pathways in the rice rhizosphere....

  8. Rice production in relation to soil quality under different rice-based cropping systems

    Science.gov (United States)

    Tran Ba, Linh; Sleutel, Steven; Nguyen Van, Qui; Thi, Guong Vo; Le Van, Khoa; Cornelis, Wim

    2016-04-01

    Soil quality of shallow paddy soils may be improved by introducing upland crops and thus a more diverse crop cultivation pattern. Yet, the causal relationship between crop performance and enhanced soil traits in rice-upland crop rotations remains elusive. The objectives of this study were to (i) find correlations among soil properties under different rice-upland crop systems and link selected soil properties to rice growth and yield, (ii) present appropriate values of soil parameters for sustainable rice productivity in heavy clay soil, (iii) evaluate the effect of rotating rice with upland crops on rice yield and economic benefit in a long-term experiment. A rice-upland crop rotational field experiment in the Vietnamese Mekong delta was conducted for 10 years using a randomized complete block design with four treatments and four replications. Treatments were: (i) rice-rice-rice (control - conventional system as farmers' practice), (ii) rice-maize-rice, (iii) rice-mung bean-rice, and (iv) rice-mung bean-maize. Soil and plant sampling were performed after harvest of the rice crop at the end of the final winter-spring cropping season (i.e. year 10). Results show differences in rice growth and yield, and economic benefit as an effect of the crop rotation system. These differences were linked with changes in bulk density, soil porosity, soil aggregate stability index, soil penetration resistance, soil macro-porosity, soil organic carbon, acid hydrolysable soil C and soil nutrient elements, especially at soil depth of 20-30 cm. This is evidenced by the strong correlation (P < 0.01) between rice plant parameters, rice yield and soil properties such as bulk density, porosity, penetration resistance, soil organic carbon and Chydrolysable. It turned out that good rice root growth and rice yield corresponded to bulk density values lower than 1.3 Mg m-3, soil porosity higher than 50%, penetration resistance below 1.0 MPa, and soil organic carbon above 25 g kg-1. The optimal

  9. Assessment of reference gene stability in Rice stripe virus and Rice black streaked dwarf virus infection rice by quantitative Real-time PCR.

    Science.gov (United States)

    Fang, Peng; Lu, Rongfei; Sun, Feng; Lan, Ying; Shen, Wenbiao; Du, Linlin; Zhou, Yijun; Zhou, Tong

    2015-10-24

    Stably expressed reference gene(s) normalization is important for the understanding of gene expression patterns by quantitative Real-time PCR (RT-qPCR), particularly for Rice stripe virus (RSV) and Rice black streaked dwarf virus (RBSDV) that caused seriously damage on rice plants in China and Southeast Asia. The expression of fourteen common used reference genes of Oryza sativa L. were evaluated by RT-qPCR in RSV and RBSDV infected rice plants. Suitable normalization reference gene(s) were identified by geNorm and NormFinder algorithms. UBQ 10 + GAPDH and UBC + Actin1 were identified as suitable reference genes for RT-qPCR normalization under RSV and RBSDV infection, respectively. When using multiple reference genes, the expression patterns of OsPRIb and OsWRKY, two virus resistance genes, were approximately similar with that reported previously. Comparatively, by using single reference gene (TIP41-Like), a weaker inducible response was observed. We proposed that the combination of two reference genes could obtain more accurate and reliable normalization of RT-qPCR results in RSV- and RBSDV-infected plants. This work therefore sheds light on establishing a standardized RT-qPCR procedure in RSV- and RBSDV-infected rice plants, and might serve as an important point for discovering complex regulatory networks and identifying genes relevant to biological processes or implicated in virus.

  10. The effects of nitrogen fixation and plant growth-promoting in rice-diazotroph association

    International Nuclear Information System (INIS)

    Lin Fan; Wang Lu

    1999-05-01

    This is a review of studies on applications of the genetic engineered ammonium-tolerant diazotroph as an inoculum with the effects of nitrogen-fixation, plant growth-promoting and yield-increasing on rice and some crops by using 15 N tracer in mini-plot and field experiments in resent years

  11. Rice Genome Research: Current Status and Future Perspectives

    Directory of Open Access Journals (Sweden)

    Bin Han

    2008-11-01

    Full Text Available Rice ( L. is the leading genomics system among the crop plants. The sequence of the rice genome, the first cereal plant genome, was published in 2005. This review summarizes progress made in rice genome annotations, comparative genomics, and functional genomics researches. It also maps out the status of rice genomics globally and provides a vision of future research directions and resource building.

  12. Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

    DEFF Research Database (Denmark)

    Li, Xin; Zhu, Jingde; Hu, Fengyi

    2012-01-01

    DNA methylation plays important biological roles in plants and animals. To examine the rice genomic methylation landscape and assess its functional significance, we generated single-base resolution DNA methylome maps for Asian cultivated rice Oryza sativa ssp. japonica, indica and their wild rela...

  13. Cd Toxicity and Accumulation in Rice Plants Vary with Soil Nitrogen Status and Their Genotypic Difference can be Partly Attributed to Nitrogen Uptake Capacity

    Directory of Open Access Journals (Sweden)

    Qin DU

    2009-12-01

    Full Text Available Two indica rice genotypes, viz. Milyang 46 and Zhenshan 97B differing in Cd accumulation and tolerance were used as materials in a hydroponic system consisting of four Cd levels (0, 0.1, 1.0 and 5.0 µmol/L and three N levels (23.2, 116.0 and 232.0 mg/L to study the effects of nitrogen status and nitrogen uptake capacity on Cd accumulation and tolerance in rice plants. N-efficient rice genotype, Zhenshan 97B, accumulated less Cd and showed higher Cd tolerance than N-inefficient rice genotype, Milyang 46. There was consistency between nitrogen uptake capacity and Cd tolerance in rice plants. Increase of N level in solution slightly increased Cd concentration in shoots but significantly increased in roots of both genotypes. Compared with the control at low N level, Cd tolerance in both rice genotypes could be significantly enhanced under normal N level, but no significant difference was observed between the Cd tolerances under normal N (116.0 mg/L and high N (232.0 mg/L conditions. The result proved that genotypic differences in Cd accumulation and toxicity could be, at least in part, attributed to N uptake capacity in rice plants.

  14. A glutathione s-transferase confers herbicide tolerance in rice

    Directory of Open Access Journals (Sweden)

    Tingzhang Hu

    2014-07-01

    Full Text Available Plant glutathione S-transferases (GSTs have been a focus of attention due to their role in herbicide detoxification. OsGSTL2 is a glutathione S-transferase, lambda class gene from rice (Oryza sativa L.. Transgenic rice plants over-expressing OsGSTL2 were generated from rice calli by the use of an Agrobacterium transformation system, and were screened by a combination of hygromycin resistance, PCR and Southern blot analysis. In the vegetative tissues of transgenic rice plants, the over-expression of OsGSTL2 not only increased levels of OsGSTL2 transcripts, but also GST and GPX expression, while reduced superoxide. Transgenic rice plants also showed higher tolerance to glyphosate and chlorsulfuron, which often contaminate agricultural fields. The findings demonstrate the detoxification role of OsGSTL2 in the growth and development of rice plants. It should be possible to apply the present results to crops for developing herbicide tolerance and for limiting herbicide contamination in the food chain.

  15. The influence of acid rain on the intake of trace elements into rice plant from soils

    International Nuclear Information System (INIS)

    Tanizaki, Yoshiyuki; Nakamura, Masaru; Maeno, Tomokazu

    1995-01-01

    Rice plant samples were grown in 14 cultivative pots by irrigation using the six conditions of artificial acid rain waters (pH: 6.5, 6.0, 4.5, 3.5, 3.0 and 2.5) and tap water (pH: 7.5). The rice grain yielded were separated into three parts, i.e., polished rice, bran and chaff, and they were reduced to powder one by one. Twenty six element contents in the three parts of grain (each 14 samples) were determined by a neutron activation analysis. The contents of Cr, Fe, Ni, Zn, Cu, Rb, Mo in the polished rice increased with decreasing of pH of the irrigation waters. The contents of Se and Br, on the contrary, decreased with decreasing of pH of the irrigation waters. Significant changes of the contents were not observed for the elements Na, Al, Cl, Sc, Mn, Co, V. The enrichment factor of trace elements to soils were calculated for the polished rice, bran and chaff. The high enrichments of Cl, Mo, Zn, Se, Cu and Ni were observed in the polished rice. The elements K, Rb, Mn, Mg and Cr were highly concentrated in the bran. (author)

  16. Sodium bicarbonate absorption and anabolism by detatched root of young paddy rice, corn and wheat plants

    International Nuclear Information System (INIS)

    Yamakawa, Takeo; Yamada, Yoshio

    1985-01-01

    This work is aimed at investigating species-to-species difference in the capability of absorption and anabolism through the root and examining the effects of sodium bicarbonate on the capability. Roots detatched from young plants of paddy rice, corn and wheat are used as the samples. The respiratory rate and anabolic rate of the detatched roots are measured by using the 14 C tracer. It is found that paddy rice whows the greatest initial anabolic rate, while the rates of corn and wheat are 14 - 30 % of that of paddy rice. The initial anabolic rate is almost independent of the concentration of sodium bicarbonate. The initial absorption rate is greatest in paddy rice, followed by corn (30 - 78 %) and wheat (16 - 21 %). It is also shown that paddy rice has the greatest capability both in anabolism and absorption. The anabolism and absorption capabilities of corn are 17 - 29 % and 31 - 80 % of those of paddy rice, respectively. The corresponding values of wheat are 16 - 38 % and 24 - 66 %. Sidium bicarbonate has little effect on the anabolism capability, while the absorption capability is affected above a high concentration of 50 mM. (Nogami, K.)

  17. Uptake of 32P and 86Rb as influenced by temperature, transpiration suppress and shading treatment in rice plants

    International Nuclear Information System (INIS)

    Lee, G.B.; Hong, Y.P.; Im, J.N.; Chung, K.W.

    1989-01-01

    This study was carried out to know the uptake pattern of phosphorous and potassium in rice plants using by two radioisotopes, 32P and 86Rb as tracers for two years, 1987 and 1988. Rice plants were grown in the hydroponic culture with Yoshida's solution, and treated with different temperatures, transpiration suppress, shading, and phosphorous and potassium deletions. The uptake amount of 32P and 86Rb were increased with the increasing temperature in root sphere of rice plant, particularly remarkable increase of 86Rb uptake at 35deg C. The uptake of 32P tended to be promoted at the treatment of low air-high water temperature (17-30deg C), while that of 86Rb was not significantly differenced from different temperature treatments. The effect of transpiration on the uptake of 32P and 86Rb was extremely low. This phenomenon may suggest that the absorption be depending on active uptake rather than passive one by transpiration stream. The total carbohydrate contents of rice root were decreased by shading treatment, resulting significant reduction in the uptake of 32P and 86Rb. The uptake of 86Rb was remarkably increased in the treatment of potassium deletion, but that of 32P was not significantly increased in the delection of phosphorous

  18. Uptake of 32P and 86Rb as influenced by temperature, transpiration suppress and shading treatment in rice plants

    Energy Technology Data Exchange (ETDEWEB)

    Lee, G. B.; Hong, Y. P.; Im, J. N.; Chung, K. W.

    1989-07-01

    This study was carried out to know the uptake pattern of phosphorous and potassium in rice plants using by two radioisotopes, 32P and 86Rb as tracers for two years, 1987 and 1988. Rice plants were grown in the hydroponic culture with Yoshida's solution, and treated with different temperatures, transpiration suppress, shading, and phosphorous and potassium deletions. The uptake amount of 32P and 86Rb were increased with the increasing temperature in root sphere of rice plant, particularly remarkable increase of 86Rb uptake at 35deg C. The uptake of 32P tended to be promoted at the treatment of low air-high water temperature (17-30deg C), while that of 86Rb was not significantly differenced from different temperature treatments. The effect of transpiration on the uptake of 32P and 86Rb was extremely low. This phenomenon may suggest that the absorption be depending on active uptake rather than passive one by transpiration stream. The total carbohydrate contents of rice root were decreased by shading treatment, resulting significant reduction in the uptake of 32P and 86Rb. The uptake of 86Rb was remarkably increased in the treatment of potassium deletion, but that of 32P was not significantly increased in the delection of phosphorous.

  19. Genome wide re-sequencing of newly developed Rice Lines from common wild rice (Oryza rufipogon Griff.) for the identification of NBS-LRR genes.

    Science.gov (United States)

    Liu, Wen; Ghouri, Fozia; Yu, Hang; Li, Xiang; Yu, Shuhong; Shahid, Muhammad Qasim; Liu, Xiangdong

    2017-01-01

    Common wild rice (Oryza rufipogon Griff.) is an important germplasm for rice breeding, which contains many resistance genes. Re-sequencing provides an unprecedented opportunity to explore the abundant useful genes at whole genome level. Here, we identified the nucleotide-binding site leucine-rich repeat (NBS-LRR) encoding genes by re-sequencing of two wild rice lines (i.e. Huaye 1 and Huaye 2) that were developed from common wild rice. We obtained 128 to 147 million reads with approximately 32.5-fold coverage depth, and uniquely covered more than 89.6% (> = 1 fold) of reference genomes. Two wild rice lines showed high SNP (single-nucleotide polymorphisms) variation rate in 12 chromosomes against the reference genomes of Nipponbare (japonica cultivar) and 93-11 (indica cultivar). InDels (insertion/deletion polymorphisms) count-length distribution exhibited normal distribution in the two lines, and most of the InDels were ranged from -5 to 5 bp. With reference to the Nipponbare genome sequence, we detected a total of 1,209,308 SNPs, 161,117 InDels and 4,192 SVs (structural variations) in Huaye 1, and 1,387,959 SNPs, 180,226 InDels and 5,305 SVs in Huaye 2. A total of 44.9% and 46.9% genes exhibited sequence variations in two wild rice lines compared to the Nipponbare and 93-11 reference genomes, respectively. Analysis of NBS-LRR mutant candidate genes showed that they were mainly distributed on chromosome 11, and NBS domain was more conserved than LRR domain in both wild rice lines. NBS genes depicted higher levels of genetic diversity in Huaye 1 than that found in Huaye 2. Furthermore, protein-protein interaction analysis showed that NBS genes mostly interacted with the cytochrome C protein (Os05g0420600, Os01g0885000 and BGIOSGA038922), while some NBS genes interacted with heat shock protein, DNA-binding activity, Phosphoinositide 3-kinase and a coiled coil region. We explored abundant NBS-LRR encoding genes in two common wild rice lines through genome wide re

  20. Expression of hybrid fusion protein (Cry1Ac::ASAL) in transgenic rice plants imparts resistance against multiple insect pests.

    Science.gov (United States)

    Boddupally, Dayakar; Tamirisa, Srinath; Gundra, Sivakrishna Rao; Vudem, Dashavantha Reddy; Khareedu, Venkateswara Rao

    2018-05-31

    To evolve rice varieties resistant to different groups of insect pests a fusion gene, comprising DI and DII domains of Bt Cry1Ac and carbohydrate binding domain of garlic lectin (ASAL), was constructed. Transgenic rice lines were generated and evaluated to assess the efficacy of Cry1Ac::ASAL fusion protein against three major pests, viz., yellow stem borer (YSB), leaf folder (LF) and brown planthopper (BPH). Molecular analyses of transgenic plants revealed stable integration and expression of the fusion gene. In planta insect bioassays on transgenics disclosed enhanced levels of resistance compared to the control plants. High insect mortality of YSB, LF and BPH was observed on transgenics compared to that of control plants. Furthermore, honeydew assays revealed significant decreases in the feeding ability of BPH on transgenic plants as compared to the controls. Ligand blot analysis, using BPH insects fed on cry1Ac::asal transgenic rice plants, revealed a modified receptor protein-binding pattern owing to its ability to bind to additional receptors in insects. The overall results authenticate that Cry1Ac::ASAL protein is endowed with remarkable entomotoxic effects against major lepidopteran and hemipteran insects. As such, the fusion gene appears promising and can be introduced into various other crops to control multiple insect pests.

  1. Expressing OsMPK4 Impairs Plant Growth but Enhances the Resistance of Rice to the Striped Stem Borer Chilo suppressalis

    Directory of Open Access Journals (Sweden)

    Xiaoli Liu

    2018-04-01

    Full Text Available Mitogen-activated protein kinases (MPKs play a central role not only in plant growth and development, but also in plant responses to abiotic and biotic stresses, including pathogens. Yet, their role in herbivore-induced plant defenses and their underlying mechanisms remain largely unknown. Here, we cloned a rice MPK gene, OsMPK4, whose expression was induced by mechanical wounding, infestation of the striped stem borer (SSB Chilo suppressalis, and treatment with jasmonic acid (JA, but not by treatment with salicylic acid (SA. The overexpression of OsMPK4 (oe-MPK4 enhanced constitutive and/or SSB-induced levels of JA, jasmonoyl-l-isoleucine (JA-Ile, ethylene (ET, and SA, as well as the activity of elicited trypsin proteinase inhibitors (TrypPIs, and reduced SSB performance. On the other hand, compared to wild-type plants, oe-MPK4 lines in the greenhouse showed growth retardation. These findings suggest that OsMPK4, by regulating JA-, ET-, and SA-mediated signaling pathways, functions as a positive regulator of rice resistance to the SSB and a negative regulator of rice growth.

  2. QTLs for heading date and plant height under multiple environments in rice.

    Science.gov (United States)

    Han, Zhongmin; Hu, Wei; Tan, Cong; Xing, Yongzhong

    2017-02-01

    Both heading date and plant height are important traits related to grain yield in rice. In this study, a recombinant inbred lines (RILs) population was used to map quantitative trait loci (QTLs) for both traits under 3 long-day (LD) environments and 1 short-day (SD) environment. A total of eight QTLs for heading date and three QTLs for plant height were detected by composite interval mapping under LD conditions. Additional one QTL for heading date and three QTLs for plant height were identified by Two-QTL model under LD conditions. Among them, major QTLs qHd7.1, qHd7.2 and qHd8 for heading date, and qPh1 and qPh7.1 for plant height were commonly detected. qHd7.1 and qHd7.2 were mapped to small regions of less than 1 cM. Genome position comparison of previously cloned genes with QTLs detected in this study revealed that qHd5 and qPh3.1 were two novel QTLs. The alleles of these QTLs increasing trait values were dispersed in both parents, which well explained the transgressive segregation observed in this population. In addition, the interaction between qHd7.1 and qHd8 was detected under all LD conditions. Multiple-QTL model analysis revealed that all QTLs and their interactions explained over 80% of heading date variation and 50% of plant height variation. Two heading date QTLs were detected under SD condition. Of them, qHd10 were commonly identified under LD condition. The difference in QTL detection between LD and SD conditions indicated most heading date QTLs are sensitive to photoperiod. These findings will benefit breeding design for heading date and plant height in rice.

  3. Circumnutation and its dependence on the gravity response in rice, morning glory and pea plants: verification by spaceflight experiments

    Science.gov (United States)

    Takahashi, Hideyuki; Kobayashi, Akie; Fujii, Nobuharu; Yano, Sachiko; Shimazu, Toru; Kim, Hyejeong; Tomita, Yuuta; Miyazawa, Yutaka

    Plant organs display helical growth movement known as circumnutation. This movement helps plant organs find suitable environmental cues. The amplitude, period and shape of the circumnutation differ depending on plant species or organs. Although the mechanism for circumnutation is unclear, it has long been argued whether circumnutation is involved with gravitropic response. Previously, we showed that shoots of weeping morning glory (we1 and we2) are impaired in not only the differentiation of endodermis (gravisensing cells) and gravitropic response, but also winding and circumnutation (Kitazawa et al., PNAS 102: 18742-18747, 2005). Here, we report a reduced circumnutation in the shoots of rice and the roots of pea mutants defective in gravitropic response. Coleoptiles of clinorotated rice seedlings and decapped roots of pea seedlings also showed a reduction of their circumnutational movement. These results suggest that circumnutation is tightly related with gravitropic response. In the proposed spaceflight experiments, “Plant Rotation”, we will verify the hypothesis that circumnutation requires gravity response, by using microgravity environment in KIBO module of the International Space Station. We will grow rice and morning glory plants under both muG and 1G conditions on orbit and monitor their growth by a camera. The downlinked images will be analyzed for the measurements of plant growth and nutational movements. This experiment will enable us to answer the question whether circumnutation depends on gravity response or not.

  4. Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions.

    Science.gov (United States)

    Biscarini, Filippo; Cozzi, Paolo; Casella, Laura; Riccardi, Paolo; Vattari, Alessandra; Orasen, Gabriele; Perrini, Rosaria; Tacconi, Gianni; Tondelli, Alessandro; Biselli, Chiara; Cattivelli, Luigi; Spindel, Jennifer; McCouch, Susan; Abbruscato, Pamela; Valé, Giampiero; Piffanelli, Pietro; Greco, Raffaella

    2016-01-01

    In this study we carried out a genome-wide association analysis for plant and grain morphology and root architecture in a unique panel of temperate rice accessions adapted to European pedo-climatic conditions. This is the first study to assess the association of selected phenotypic traits to specific genomic regions in the narrow genetic pool of temperate japonica. A set of 391 rice accessions were GBS-genotyped yielding-after data editing-57000 polymorphic and informative SNPS, among which 54% were in genic regions. In total, 42 significant genotype-phenotype associations were detected: 21 for plant morphology traits, 11 for grain quality traits, 10 for root architecture traits. The FDR of detected associations ranged from 3 · 10-7 to 0.92 (median: 0.25). In most cases, the significant detected associations co-localised with QTLs and candidate genes controlling the phenotypic variation of single or multiple traits. The most significant associations were those for flag leaf width on chromosome 4 (FDR = 3 · 10-7) and for plant height on chromosome 6 (FDR = 0.011). We demonstrate the effectiveness and resolution of the developed platform for high-throughput phenotyping, genotyping and GWAS in detecting major QTLs for relevant traits in rice. We identified strong associations that may be used for selection in temperate irrigated rice breeding: e.g. associations for flag leaf width, plant height, root volume and length, grain length, grain width and their ratio. Our findings pave the way to successfully exploit the narrow genetic pool of European temperate rice and to pinpoint the most relevant genetic components contributing to the adaptability and high yield of this germplasm. The generated data could be of direct use in genomic-assisted breeding strategies.

  5. Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions.

    Directory of Open Access Journals (Sweden)

    Filippo Biscarini

    Full Text Available In this study we carried out a genome-wide association analysis for plant and grain morphology and root architecture in a unique panel of temperate rice accessions adapted to European pedo-climatic conditions. This is the first study to assess the association of selected phenotypic traits to specific genomic regions in the narrow genetic pool of temperate japonica. A set of 391 rice accessions were GBS-genotyped yielding-after data editing-57000 polymorphic and informative SNPS, among which 54% were in genic regions.In total, 42 significant genotype-phenotype associations were detected: 21 for plant morphology traits, 11 for grain quality traits, 10 for root architecture traits. The FDR of detected associations ranged from 3 · 10-7 to 0.92 (median: 0.25. In most cases, the significant detected associations co-localised with QTLs and candidate genes controlling the phenotypic variation of single or multiple traits. The most significant associations were those for flag leaf width on chromosome 4 (FDR = 3 · 10-7 and for plant height on chromosome 6 (FDR = 0.011.We demonstrate the effectiveness and resolution of the developed platform for high-throughput phenotyping, genotyping and GWAS in detecting major QTLs for relevant traits in rice. We identified strong associations that may be used for selection in temperate irrigated rice breeding: e.g. associations for flag leaf width, plant height, root volume and length, grain length, grain width and their ratio. Our findings pave the way to successfully exploit the narrow genetic pool of European temperate rice and to pinpoint the most relevant genetic components contributing to the adaptability and high yield of this germplasm. The generated data could be of direct use in genomic-assisted breeding strategies.

  6. Over-expression of Arabidopsis thaliana SFD1/GLY1, the gene encoding plastid localized glycerol-3-phosphate dehydrogenase, increases plastidic lipid content in transgenic rice plants.

    Science.gov (United States)

    Singh, Vijayata; Singh, Praveen Kumar; Siddiqui, Adnan; Singh, Subaran; Banday, Zeeshan Zahoor; Nandi, Ashis Kumar

    2016-03-01

    Lipids are the major constituents of all membranous structures in plants. Plants possess two pathways for lipid biosynthesis: the prokaryotic pathway (i.e., plastidic pathway) and the eukaryotic pathway (i.e., endoplasmic-reticulum (ER) pathway). Whereas some plants synthesize galactolipids from diacylglycerol assembled in the plastid, others, including rice, derive their galactolipids from diacylglycerols assembled by the eukaryotic pathway. Arabidopsis thaliana glycerol-3-phosphate dehydrogenase (G3pDH), coded by SUPPRESSOR OF FATTY ACID DESATURASE 1 (SFD1; alias GLY1) gene, catalyzes the formation of glycerol 3-phosphate (G3p), the backbone of many membrane lipids. Here SFD1 was introduced to rice as a transgene. Arabidopsis SFD1 localizes in rice plastids and its over-expression increases plastidic membrane lipid content in transgenic rice plants without any major impact on ER lipids. The results suggest that over-expression of plastidic G3pDH enhances biosynthesis of plastid-localized lipids in rice. Lipid composition in the transgenic plants is consistent with increased phosphatidylglycerol synthesis in the plastid and increased galactolipid synthesis from diacylglycerol produced via the ER pathway. The transgenic plants show a higher photosynthetic assimilation rate, suggesting a possible application of this finding in crop improvement.

  7. Monitoring the colonization of sugarcane and rice plants by the endophytic diazotrophic bacterium Gluconacetobacter diazotrophicus marked with gfp and gusA reporter genes.

    Science.gov (United States)

    Rouws, L F M; Meneses, C H S G; Guedes, H V; Vidal, M S; Baldani, J I; Schwab, S

    2010-09-01

    To evaluate the colonization process of sugarcane plantlets and hydroponically grown rice seedlings by Gluconacetobacter diazotrophicus strain PAL5 marked with the gusA and gfp reporter genes. Sugarcane plantlets inoculated in vitro with PAL5 carrying the gfp::gusA plasmid pHRGFPGUS did not present green fluorescence, but beta-glucuronidase (GUS)-stained bacteria could be observed inside sugarcane roots. To complement this existing inoculation methodology for micropropagated sugarcane with a more rapid colonization assay, we employed hydroponically grown gnotobiotic rice seedlings to study PAL5-plant interaction. PAL5 could be isolated from the root surface (10(8) CFU g(-1)) and from surface-disinfected root and stem tissues (10(4) CFU g(-1)) of inoculated plants, suggesting that PAL5 colonized the internal plant tissues. Light microscopy confirmed the presence of bacteria inside the root tissue. After inoculation of rice plantlets with PAL5 marked with the gfp plasmid pHRGFPTC, bright green fluorescent bacteria could be seen colonizing the rice root surface, mainly at the sites of lateral root emergence, at root caps and on root hairs. The plasmids pHRGFPGUS and pHRGFPTC are valid tools to mark PAL5 and monitor the colonization of micropropagated sugarcane and hydroponic rice seedlings. These tools are of use to: (i) study PAL5 mutants affected in bacteria-plant interactions, (ii) monitor plant colonization in real time and (iii) distinguish PAL5 from other bacteria during the study of mixed inoculants.

  8. Effect of vanadium application on the paddy rice

    Energy Technology Data Exchange (ETDEWEB)

    Chiu, T F

    1953-01-01

    The height, the root length and the weight of rice seedlings were increased by the application of ammonium vanadate. The nitrogen contents of seedlings were generally increased in proportion to the amounts of vanadate applied. Carbon contents of seedlings, however, show little difference. The best result was obtained when V/sub 2/O/sub 3/ 150 ppm was applied, but more than 500 ppm was toxic to rice seedlings, and at 1000 ppm all rice seedlings were killed. N, P, and K fertilizers were added to the rice after transplantation from the nursery, but vanadium was omitted. Little difference was found in growth and yield of the rice plants. Vanadium absorbed by younger rice seedlings has little influence on the latter growth and yields of rice plants.

  9. Multitemporal Monitoring of Plant Area Index in the Valencia Rice District with PocketLAI

    Directory of Open Access Journals (Sweden)

    Manuel Campos-Taberner

    2016-03-01

    Full Text Available Leaf area index (LAI is a key biophysical parameter used to determine foliage cover and crop growth in environmental studies in order to assess crop yield. Frequently, plant canopy analyzers (LAI-2000 and digital cameras for hemispherical photography (DHP are used for indirect effective plant area index (PAIeff estimates. Nevertheless, these instruments are expensive and have the disadvantages of low portability and maintenance. Recently, a smartphone app called PocketLAI was presented and tested for acquiring PAIeff measurements. It was used during an entire rice season for indirect PAIeff estimations and for deriving reference high-resolution PAIeff maps. Ground PAIeff values acquired with PocketLAI, LAI-2000, and DHP were well correlated (R2 = 0.95, RMSE = 0.21 m2/m2 for Licor-2000, and R2 = 0.94, RMSE = 0.6 m2/m2 for DHP. Complementary data such as phenology and leaf chlorophyll content were acquired to complement seasonal rice plant information provided by PAIeff. High-resolution PAIeff maps, which can be used for the validation of remote sensing products, have been derived using a global transfer function (TF made of several measuring dates and their associated satellite radiances.

  10. The role of tolerant genotypes and plant nutrients in the management of acid soil infertility in upland rice

    International Nuclear Information System (INIS)

    Sahrawat, K.L.; Jones, M.P.; Diatta, S.

    2000-01-01

    As in other parts of the humid tropics, acid-related problems are the major constraint to crop production on low-activity clay soils in the humid and sub-humid zones of West Africa. The upland ecosystem of West Africa is very important to rice production. About 70% of upland rice is grown in the humid zone of the sub-region. To increase and stabilize rice productivity of the acid uplands at reasonable levels, a strategy is needed that integrates the use of tolerant cultivars with soil and plant-nutrient management. Research conducted on Alfisols and Ultisols of the humid-forest and savannah zones in West Africa showed that upland rice is a robust crop, possessing a wide range of tolerance to acid-soil conditions. Recent research at WARDA showed also that acid-soil tolerance can be enhanced through interspecific Oryza sativa x O. glaberrima progenies, which not only possess increased tolerance of acid-soil conditions, but also have superior overall adaptability to diverse upland environments in the sub-region. Our research on the diagnosis of acid-soil infertility problems on the Ultisols and Alfisols of the humid savannah and forest zones indicates that P deficiency is the most important nutrient disorder for upland rice. In the forest zone, response to N depended on the application of P. In the savannah and forest-savannah transition zones, N deficiency was more important than P deficiency. Among other plant nutrients, the application of Ca and Mg (as plant nutrients) did not appear initially to improve the performance of acid-tolerant upland rice cultivars. The results from a long-term study on an Ultisol with four acid-tolerant rice cultivars, revealed that they differed in agronomic and physiological P efficiencies, and the efficiencies were higher at lower rates of P. The amounts of total P removed in three successive crops were similar for all four cultivars although P-harvest index was 10 to 12% higher in the P-efficient than the inefficient cultivars. The

  11. Dry weight and N-uptake by rice plants fertilized with azolla and N-15 enriched urea

    International Nuclear Information System (INIS)

    Abdel-Monem, M.; Gadalla, A.M.; Abbady, Kh.

    1994-01-01

    Integrated soil fertility management is essential if soil productivity is to be sustained or improved. In view the recently high cost of N-fertilizers, interest was generated in using Azolla in rice fields. A greenhouse experiment was conducted to study the fate of N-15 labelled urea to rice with or without Azolla application, also to examine the effect of the soil moisture regime at the time of urea application on nitrogen recovery. The results indicated that addition of urea to dry soil gave more than 20% of the rice dry matter as compared to the urea application to wet soil which was also reflected on the N-uptake by the rice. Also N-15 recovery by plant was increased from 22% to 41% when urea was applied to wet and dry soil respectively. At the same time N-losses dropped from 62% to 29%. Addition of Azolla to rice provided rice with 63% of the nitrogen provided by urea, this may be attributed not only to N-fixation by Azolla, but also to its role in reducing the N-losses. Application of Azolla reduced the losses of applied nitrogen from 45.5% to 22.5%. Thus, integration between Azolla and urea is valuable in N-fixation as well as inhibiting nitrogen losses. 2 tabs

  12. Plant type improvement of indigenous rice cultivars through induced mutations

    International Nuclear Information System (INIS)

    Kihupi, A.

    1997-01-01

    A high yielding, locally adapted cultivar 'Afaa Mwanza 1/159' of rice (Oryza sativa L.) which is tall and late in maturity, was irradiated with gamma rays at doses of 170, 210 and 250 Gy to shorten plant height and time of maturity. Twelve mutants were selected, and evaluated for yield performance in field trials from M 6 to M 9 generations. All the mutants were shorter in plant height, and gave higher mean yield than the parent. Correlation coefficient analysis showed that the number of productive tillers, number of panicles per square meter and grain filling in the panicle were important characters which influenced yield. On the other hand, panicle length had negative influence on yield. Cv. 'Supa India' and 'Salama' were also irradiated with doses of 170, 210, 240 Gy gamma rays. Analysis of M 2 populations of these cultivars indicated that mutagenesis created a lot of variation in plant height, maturity, spikelet fertility and panicle length. The induced variation shall be useful in selecting desired plant types. (author). 16 refs, 12 tabs

  13. Plant type improvement of indigenous rice cultivars through induced mutations

    Energy Technology Data Exchange (ETDEWEB)

    Kihupi, A [Department of Crop Science and Production, Sokoine Univ. of Agriculture, Morogoro (Tanzania)

    1997-07-01

    A high yielding, locally adapted cultivar `Afaa Mwanza 1/159` of rice (Oryza sativa L.) which is tall and late in maturity, was irradiated with gamma rays at doses of 170, 210 and 250 Gy to shorten plant height and time of maturity. Twelve mutants were selected, and evaluated for yield performance in field trials from M{sub 6} to M{sub 9} generations. All the mutants were shorter in plant height, and gave higher mean yield than the parent. Correlation coefficient analysis showed that the number of productive tillers, number of panicles per square meter and grain filling in the panicle were important characters which influenced yield. On the other hand, panicle length had negative influence on yield. Cv. `Supa India` and `Salama` were also irradiated with doses of 170, 210, 240 Gy gamma rays. Analysis of M{sub 2} populations of these cultivars indicated that mutagenesis created a lot of variation in plant height, maturity, spikelet fertility and panicle length. The induced variation shall be useful in selecting desired plant types. (author). 16 refs, 12 tabs.

  14. Comparison of SAR and optical sensor data for monitoring of rice plant around Hiroshima

    Science.gov (United States)

    Oguro, Y.; Suga, Y.; Takeuchi, S.; Ogawa, M.; Konishi, T.; Tsuchiya, K.

    2001-01-01

    Through the research on the application of the multi-temporal data acquired with Landsat-5 TM, SPOT-2 HRV, SPOT-4 HRVIR and RADARSAT-1 SAR to monitoring of rice field following features are clarified. Vegetation indices NDVI (Normalized Difference Vegetation Index) and EVI (Extended Vegetation Index) derived from different optical sensors TM, HVR, HRVIR indicate nearly same characteristics suggesting validity of calibration of respective sensors. It was found that by combined use of multi-temporal vegetation indices NDVI and EVI together with SAR (Synthetic Aperture Radar) data it was found that rice planted area can be estimated with the error less than 2%.

  15. Effects of temperature and light intensity on the uptake and assimilation of 15N-labeled ammonium and nitrate in Indica and Japonica rice plants

    International Nuclear Information System (INIS)

    Ta, T.C.; Ohira, Koji

    1982-01-01

    The effects of various environmental condition such as temperature and light intensity on the uptake and assimilation of ammonium and nitrate in 4-week-old Indica and Japonica rice plants were studied using the 15 N tracer technique. Both temperature and light intensity profoundly affected the uptake and assimilation of ammonium and nitrate, and the effects were more apparent in the utilization of nitrate by both Indica and Japonica rice plants. The uptake as well as assimilation of the two forms of nitrogen were greatly inhibited at low temperature and low light intensity. On the other hand, although no significant difference in the effects of environmental conditions on the utilization of ammonium was observed between the Indica and Japonica rice plants, the former were more sensitive than the latter in the utilization of nitrate. At high temperature and high light intensity, the Indica rice plants absorbed, reduced, and assimilated nitrate more effectively than the Japonica, and this effect disappeared when the temperature or light intensity was reduced. (author)

  16. Expression of cold and drought regulatory protein (CcCDR) of pigeonpea imparts enhanced tolerance to major abiotic stresses in transgenic rice plants.

    Science.gov (United States)

    Sunitha, Mellacheruvu; Srinath, Tamirisa; Reddy, Vudem Dashavantha; Rao, Khareedu Venkateswara

    2017-06-01

    Transgenic rice expressing pigeonpea Cc CDR conferred high-level tolerance to different abiotic stresses. The multiple stress tolerance observed in CcCDR -transgenic lines is attributed to the modulation of ABA-dependent and-independent signalling-pathway genes. Stable transgenic plants expressing Cajanus cajan cold and drought regulatory protein encoding gene (CcCDR), under the control of CaMV35S and rd29A promoters, have been generated in indica rice. Different transgenic lines of CcCDR, when subjected to drought, salt, and cold stresses, exhibited higher seed germination, seedling survival rates, shoot length, root length, and enhanced plant biomass when compared with the untransformed control plants. Furthermore, transgenic plants disclosed higher leaf chlorophyll content, proline, reducing sugars, SOD, and catalase activities, besides lower levels of MDA. Localization studies revealed that the CcCDR-GFP fusion protein was mainly present in the nucleus of transformed cells of rice. The CcCDR transgenics were found hypersensitive to abscisic acid (ABA) and showed reduced seed germination rates as compared to that of control plants. When the transgenic plants were exposed to drought and salt stresses at vegetative and reproductive stages, they revealed larger panicles and higher number of filled grains compared to the untransformed control plants. Under similar stress conditions, the expression levels of P5CS, bZIP, DREB, OsLEA3, and CIPK genes, involved in ABA-dependent and-independent signal transduction pathways, were found higher in the transgenic plants than the control plants. The overall results amply demonstrate that the transgenic rice expressing CcCDR bestows high-level tolerance to drought, salt, and cold stress conditions. Accordingly, the CcCDR might be deployed as a promising candidate gene for improving the multiple stress tolerance of diverse crop plants.

  17. Strong shift in the diazotrophic endophytic bacterial community inhabiting rice (Oryza sativa) plants after flooding.

    Science.gov (United States)

    Ferrando, Lucía; Fernández Scavino, Ana

    2015-09-01

    Flooding impacts soil microbial communities, but its effect on endophytic communities has rarely been explored. This work addresses the effect of flooding on the abundance and diversity of endophytic diazotrophic communities on rice plants established in a greenhouse experiment. The nifH gene was significantly more abundant in roots after flooding, whereas the nifH gene copy numbers in leaves were unaffected and remained low. The PCA (principal component analysis) of T-RFLP (terminal restriction fragment length polymorphism) profiles indicated that root communities of replicate plots were more similar and diverse after flooding than before flooding. The nifH libraries obtained by cloning and 454 pyrosequencing consistently showed a remarkable shift in the diazotrophic community composition after flooding. Gammaproteobacteria (66-98%), mainly of the genus Stenotrophomonas, prevailed in roots before flooding, whereas Betaproteobacteria was the dominant class (26-34%) after flooding. A wide variety of aerotolerant and anaerobic diazotrophic bacteria (e.g. Dechloromonas, Rhodopseudomonas, Desulfovibrio, Geobacter, Chlorobium, Spirochaeta, Selenomonas and Dehalobacter) with diverse metabolic traits were retrieved from flooded rice roots. These findings suggest that endophytic communities could be significantly impacted by changes in plant-soil conditions derived from flooding during rice cropping. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  18. Study of arsenic injury to rice plant

    Energy Technology Data Exchange (ETDEWEB)

    Tsujimoto, T; Matsumoto, H; Okahashi, C; Wada, M

    1968-01-01

    Growth injury happened to rice plants when waste liquid flowed from a mercury refinery into paddy fields in July 1967. Arsenic turned out to be the main cause of the growth injury. Investigation of the contaminated fields revealed that the injury was the most severe at the water inlet to the field, and was comparatively slight in the middle of it. The quantity of arsenic absorbed in the soil was very large at the inlet and was decreasingly small towards the centre of them. Moreover, excessive quantities of arsenic were often found on the surface of the fields. The constituent was seen permeating the lower layers of the soil. The permeation was deep in proportion to the good drainage of soil. Drastic measures should be taken with a special reference to quantity of arsenic and type of soil.

  19. The migration, accumulation and distribution of 59Fe in rice plants and soils

    International Nuclear Information System (INIS)

    Wang Yumin; Xu Shiming; Xu Guanren

    1990-07-01

    The 59 Fe is one of radionuclides in the waste water discharged from nuclear power plants. The accumulation and distribution of 59 Fe in rice plants at different growing stages and the accumulation and migration in soils of different textures were studied by using solution containing 59 FeCl 3 as a tracer. At the same contaminated activity, the distribution in the soils are discussed. According to the biological consequences caused by 59 Fe entering indirectly into agroecological environment, the possible methods for treatment and utilization of agricultural products are suggested

  20. Analysis of DNA methylation related to rice adult plant resistance to bacterial blight based on methylation-sensitive AFLP (MSAP) analysis.

    Science.gov (United States)

    Sha, A H; Lin, X H; Huang, J B; Zhang, D P

    2005-07-01

    DNA methylation is known to play an important role in the regulation of gene expression in eukaryotes. The rice cultivar Wase Aikoku 3 becomes resistant to the blight pathogen Xanthomonas oryzae pv. oryzae at the adult stage. Using methylation-sensitive amplified polymorphism (MSAP) analysis, we compared the patterns of cytosine methylation in seedlings and adult plants of the rice cultivar Wase Aikoku 3 that had been inoculated with the pathogen Xanthomonas oryzae pv. oryzae, subjected to mock inoculation or left untreated. In all, 2000 DNA fragments, each representing a recognition site cleaved by either or both of two isoschizomers, were amplified using 60 pairs of selective primers. A total of 380 sites were found to be methylated. Of these, 45 showed differential cytosine methylation among the seedlings and adult plants subjected to different treatments, and overall levels of methylation were higher in adult plants than in seedlings. All polymorphic fragments were sequenced, and six showed homology to genes that code for products of known function. Northern analysis of three fragments indicated that their expression varied with methylation pattern, with hypermethylation being correlated with repression of transcription, as expected. The results suggest that significant differences in cytosine methylation exist between seedlings and adult plants, and that hypermethylation or hypomethylation of specific genes may be involved in the development of adult plant resistance (APR) in rice plants.

  1. Constitutive expression of DaCBF7, an Antarctic vascular plant Deschampsia antarctica CBF homolog, resulted in improved cold tolerance in transgenic rice plants.

    Science.gov (United States)

    Byun, Mi Young; Lee, Jungeun; Cui, Li Hua; Kang, Yoonjee; Oh, Tae Kyung; Park, Hyun; Lee, Hyoungseok; Kim, Woo Taek

    2015-07-01

    Deschampsia antarctica is an Antarctic hairgrass that grows on the west coast of the Antarctic peninsula. In this report, we have identified and characterized a transcription factor, D. antarctica C-repeat binding factor 7 (DaCBF7), that is a member of the monocot group V CBF homologs. The protein contains a single AP2 domain, a putative nuclear localization signal, and the typical CBF signature. DaCBF7, like other monocot group V homologs, contains a distinct polypeptide stretch composed of 43 amino acids in front of the AP2 motif. DaCBF7 was predominantly localized to nuclei and interacted with the C-repeat/dehydration responsive element (CRT/DRE) core sequence (ACCGAC) in vitro. DaCBF7 was induced by abiotic stresses, including drought, cold, and salinity. To investigate its possible cellular role in cold tolerance, a transgenic rice system was employed. DaCBF7-overexpressing transgenic rice plants (Ubi:DaCBF7) exhibited markedly increased tolerance to cold stress compared to wild-type plants without growth defects; however, overexpression of DaCBF7 exerted little effect on tolerance to drought or salt stress. Transcriptome analysis of a Ubi:DaCBF7 transgenic line revealed 13 genes that were up-regulated in DaCBF7-overexpressing plants compared to wild-type plants in the absence of cold stress and in short- or long-term cold stress. Five of these genes, dehydrin, remorin, Os03g63870, Os11g34790, and Os10g22630, contained putative CRT/DRE or low-temperature responsive elements in their promoter regions. These results suggest that overexpression of DaCBF7 directly and indirectly induces diverse genes in transgenic rice plants and confers enhanced tolerance to cold stress. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

  2. Plant Type and Its Effects on Canopy Structure at Heading Stage in Various Ecological Areas for a Two-line Hybrid Rice Combination, Liangyoupeijiu

    Directory of Open Access Journals (Sweden)

    Chuan-gen LU

    2010-09-01

    Full Text Available A two-line hybrid rice combination, Liangyoupeijiu, was used to estimate several factors of plant type, and environmental models for these factors at the heading stage were established using the data of eight ecological experimental sites in 2006 and 2007. According to climatic data from 1951 to 2005, the differences in those factors and their effects on plant canopy were analyzed for four rice cropping areas in China, including South China, the middle-lower reaches of the Yangtze River, Sichuan Basin, and river valley in Yunnan, China. The thickness of leaf layer (the distance from pulvinus of the third leaf from the top to the tip of flag leaf and distribution of leaf area could be used as candidate indices for the plant type of a rice canopy.

  3. Stimulate The Growth of Rice Using Endophytic Bacteria from Lowland Rice Plant Tissue

    Directory of Open Access Journals (Sweden)

    Nuni Gofar

    2015-07-01

    Full Text Available Exploration and selection of endophytic bacteria from healthy food crops grown in lowland ecosystem is important to be conducted in order to get growth-stimulating endophytic bacteria at soil with low fertility level so that capable to optimize initial growth of food crops and subsequently can increase productivity level of lowland soil.The research objective was to isolate and to test the IAA-producing endophytic bacteria isolate in stimulating the rice crop growth at lowland area. Endophytic bacteria are isolated from tissues of rice, corn and peanut crops which grown at shallow swamp land in Ogan Ilir and Ogan Komering Ilir Districts, South Sumatra, Indonesia. There was nine isolates of nitrogen-fixer endophytic bacteria that capable to contribute IAA phytohormone into their growth media. The P31 isolate from rice crop tisssue of 2 months old produce the best rice sprouts than other isolates. This isolate can contribute of about 10 mg kg-1 IAA to its growth medium and increase the crowns dry weight and the roots dry weight respectively with magnitudes of 133% and 225% compared to control treatment. Concentration and absorbtion of N for rice crops innoculated with P31 isolates had increased by 169% and 400%, recpectively. The P31 isolates had been identified as Burkholderia pseudomallei (also known as Pseudomonas pseudomallei.

  4. THE EFFECT OF RICE CULTIVARS ON METHANE EMISSION FROM IRRIGATED RICE FIELD

    Directory of Open Access Journals (Sweden)

    P. Setyanto

    2016-10-01

    Full Text Available Rice plants have been reported to affect methane (CH4 emission from rice fields. The objectives of this study were to determine the effect of rice cultivars on CH4 emission from flooded rice and to develop crop management strategies with low emitting rice cultivars while sustaining high yield. The four rice cultivars studied were Memberamo, Cisadane, IR64, and Way Apoburu. The CH4 emissions were determined in the wet season of 2001/2002 (November-February using an automated closed chamber technique in an irrigated field condition. Farmyard manure at the rate of 5 t ha-1 was given to the plots to ensure carbon was not limited. Root weight, root length, biomass, and number of tillers were determined at 17, 36, and 57 days after transplanting (DAT. The results showed that the mean CH4 emission was highest in the plot planted with Cisadane (94.8 kg CH4 ha-1, and the lowest with IR64 (37.7 kg CH4 ha-1. The plots treated with emberamo and Way Apoburu resulted an intermediate CH4 emission at the average of 61.1 and 58.9 kg CH4 ha-1, respectively. There was no significant difference in yield between the cultivars tested. The yield of Memberamo, Cisadane, IR64, and Way Apoburu were 5.882, 5.764, 5.873 and 6.065 t ha-1, respectively. Statistical analysis showed that there were no significant differences in the root weight and root length among cultivars. However, Cisadane gave the highest dry matter weight (222 g hill-1 at 57 DAT compared to the other cultivars (175-190 g hill-1. Plant tillers did not show significant differences between the cultivars. Regression analysis showed that CH4 flux was significantly related with root weight, root length, aboveground biomass, and number of plant tillers. This finding shows that the use of selected cultivars, such as IR64, can potentially lower CH4 emission without scarifying yield.

  5. Determination of rice panicle numbers during heading by multi-angle imaging

    Directory of Open Access Journals (Sweden)

    Lingfeng Duan

    2015-06-01

    Full Text Available Plant phenomics has the potential to accelerate progress in understanding gene functions and environmental responses. Progress has been made in automating high-throughput plant phenotyping. However, few studies have investigated automated rice panicle counting. This paper describes a novel method for automatically and nonintrusively determining rice panicle numbers during the full heading stage by analyzing color images of rice plants taken from multiple angles. Pot-grown rice plants were transferred via an industrial conveyer to an imaging chamber. Color images from different angles were automatically acquired as a turntable rotated the plant. The images were then analyzed and the panicle number of each plant was determined. The image analysis pipeline consisted of extracting the i2 plane from the original color image, segmenting the image, discriminating the panicles from the rest of the plant using an artificial neural network, and calculating the panicle number in the current image. The panicle number of the plant was taken as the maximum of the panicle numbers extracted from all 12 multi-angle images. A total of 105 rice plants during the full heading stage were examined to test the performance of the method. The mean absolute error of the manual and automatic count was 0.5, with 95.3% of the plants yielding absolute errors within ± 1. The method will be useful for evaluating rice panicles and will serve as an important supplementary method for high-throughput rice phenotyping.

  6. RNAi-mediated resistance to rice black-streaked dwarf virus in transgenic rice.

    Science.gov (United States)

    Ahmed, Mohamed M S; Bian, Shiquan; Wang, Muyue; Zhao, Jing; Zhang, Bingwei; Liu, Qiaoquan; Zhang, Changquan; Tang, Shuzhu; Gu, Minghong; Yu, Hengxiu

    2017-04-01

    Rice black-streaked dwarf virus (RBSDV), a member of the genus Fijivirus in the family Reoviridae, causes significant economic losses in rice production in China and many other Asian countries. Development of resistant varieties by using conventional breeding methods is limited, as germplasm with high level of resistance to RBSDV have not yet been found. One of the most promising methods to confer resistance against RBSDV is the use of RNA interference (RNAi) technology. RBSDV non-structural protein P7-2, encoded by S7-2 gene, is a potential F-box protein and involved in the plant-virus interaction through the ubiquitination pathway. P8, encoded by S8 gene, is the minor core protein that possesses potent active transcriptional repression activity. In this study, we transformed rice calli using a mini-twin T-DNA vector harboring RNAi constructs of the RBSDV genes S7-2 or S8, and obtained plants harboring the target gene constructs and the selectable marker gene, hygromycin phosphotransferase (HPT). From the offspring of these transgenic plants, we obtained selectable marker (HPT gene)-free plants. Homozygous T 5 transgenic lines which harbored either S7-2-RNAi or S8-RNAi exhibited high level resistance against RBSDV under field infection pressure from indigenous viruliferous small brown planthoppers. Thus, our results showed that RNA interference with the expression of S7-2 or S8 genes seemed an effective way to induce high level resistance in rice against RBSD disease.

  7. Uptake and translocation of Cd in different rice cultivars and the relation with Cd accumulation in rice grain

    International Nuclear Information System (INIS)

    Liu Jianguo; Qian Min; Cai Guoliang; Yang Jianchang; Zhu Qingsen

    2007-01-01

    The variations among six rice cultivars in cadmium (Cd) uptake and translocation were investigated with pot soil experiments. The results showed that only a very small portion (0.73%) of Cd absorbed by rice plant was transferred into grain. With regard to plant total Cd uptake, Cd concentrations and quantity accumulations in roots, stems and leaves, the differences among the cultivars (between the largest one and the smallest one) were less than one time. But for Cd concentrations and Cd quantity accumulations in the grains, the differences were more than five and eight times, respectively. With respect to Cd distribution portions in plant organs, the diversities among the cultivars were also small in roots, stems and leaves, but much larger in grains. Grain Cd concentrations correlated positively and significantly (P < 0.01) with Cd quantity accumulations in plant, Cd distribution ratios to aboveground parts, and especially with Cd distribution ratios from aboveground parts to the grain. The results indicated that Cd concentration in rice grain was governed somewhat by plant Cd uptake and the transport of Cd from root to shoot, and in a greater extent, by the transport of Cd from shoot to grain. Cd was not distributed evenly in different products after rice grain processing. The average Cd concentration in cortex (embryo) was five times more than that in chaff and polished rice. With regard to Cd quantity accumulation in the products, near 40% in cortex (embryo), 45% in polished rice and 15% in chaff averagely

  8. Salt tolerant SUV3 overexpressing transgenic rice plants conserve physicochemical properties and microbial communities of rhizosphere.

    Science.gov (United States)

    Sahoo, Ranjan K; Ansari, Mohammad W; Tuteja, Renu; Tuteja, Narendra

    2015-01-01

    Key concerns in the ecological evaluation of GM crops are undesirably spread, gene flow, other environmental impacts, and consequences on soil microorganism's biodiversity. Numerous reports have highlighted the effects of transgenic plants on the physiology of non-targeted rhizospheric microbes and the food chain via causing adverse effects. Therefore, there is an urgent need to develop transgenics with insignificant toxic on environmental health. In the present study, SUV3 overexpressing salt tolerant transgenic rice evaluated in New Delhi and Cuttack soil conditions for their effects on physicochemical and biological properties of rhizosphere. Its cultivation does not affect soil properties viz., pH, Eh, organic C, P, K, N, Ca, Mg, S, Na and Fe(2+). Additionally, SUV3 rice plants do not cause any change in the phenotype, species characteristics and antibiotic sensitivity of rhizospheric bacteria. The population and/or number of soil organisms such as bacteria, fungi and nematodes were unchanged in the soil. Also, the activity of bacterial enzymes viz., dehydrogenase, invertase, phenol oxidases, acid phosphatases, ureases and proteases was not significantly affected. Further, plant growth promotion (PGP) functions of bacteria such as siderophore, HCN, salicylic acid, IAA, GA, zeatin, ABA, NH3, phosphorus metabolism, ACC deaminase and iron tolerance were, considerably, not influenced. The present findings suggest ecologically pertinent of salt tolerant SUV3 rice to sustain the health and usual functions of the rhizospheric organisms. Copyright © 2014 Elsevier Ltd. All rights reserved.

  9. Bacillus amyloliquefaciens Confers Tolerance to Various Abiotic Stresses and Modulates Plant Response to Phytohormones through Osmoprotection and Gene Expression Regulation in Rice

    Directory of Open Access Journals (Sweden)

    Shalini Tiwari

    2017-08-01

    Full Text Available Being sessile in nature, plants have to withstand various adverse environmental stress conditions including both biotic and abiotic stresses. Comparatively, abiotic stresses such as drought, salinity, high temperature, and cold pose major threat to agriculture by negatively impacting plant growth and yield worldwide. Rice is one of the most widely consumed staple cereals across the globe, the production and productivity of which is also severely affected by different abiotic stresses. Therefore, several crop improvement programs are directed toward developing stress tolerant rice cultivars either through marker assisted breeding or transgenic technology. Alternatively, some known rhizospheric competent bacteria are also known to improve plant growth during abiotic stresses. A plant growth promoting rhizobacteria (PGPR, Bacillus amyloliquefaciens NBRI-SN13 (SN13 was previously reported by our lab to confer salt stress tolerance to rice seedlings. However, the present study investigates the role of SN13 in ameliorating various abiotic stresses such as salt, drought, desiccation, heat, cold, and freezing on a popular rice cv. Saryu-52 under hydroponic growth conditions. Apart from this, seedlings were also exogenously supplied with abscisic acid (ABA, salicylic acid (SA, jasmonic acid (JA and ethephon (ET to study the role of SN13 in phytohormone-induced stress tolerance as well as its role in abiotic and biotic stress cross-talk. All abiotic stresses and phytohormone treatments significantly affected various physiological and biochemical parameters like membrane integrity and osmolyte accumulation. SN13 also positively modulated stress-responsive gene expressions under various abiotic stresses and phytohormone treatments suggesting its multifaceted role in cross-talk among stresses and phytohormones in response to PGPR. To the best of our knowledge, this is the first report on detailed analysis of plant growth promotion and stress alleviation by a

  10. Biogeochemical cycling in Rice Agroecosystems Resulting From Water and Si management: Implications for As abatement and Sustainable Rice Production

    Science.gov (United States)

    Seyfferth, A.; Limmer, M. A.; Amaral, D.; Teasley, W.

    2017-12-01

    Flooded rice agroecosystems favor geochemical conditions that mobilize soil-bound arsenic (As) and produce methane (CH4). These negative outcomes of flooded rice may lead to As exposure upon As-laden rice grain consumption and enhanced greenhouse gas emissions. Periodic draining of fields (e.g., alternate wetting and drying) is effective at minimizing these negative outcomes, but may reduce rice yield, increase toxic Cd in grain, and increase nitrous oxide (N2O) emissions. Because 3 of the 4 dominant chemical form of As in flooded paddy soil share the efficient Si uptake pathway, increasing plant-available Si can decrease toxic As in grain and boost yield, particularly when plants are stressed with As. We used combined pot and field studies to examine the biogeochemical cycling of As, Fe, Si, and C when plants are grown with water and/or Si management, the latter of which under both low and high As conditions. We show that increasing plant-available Si can be used alone or in conjunction with water management to improve rice yields depending on the edaphic conditions. These processes and findings will be discussed in the larger context of global food security.

  11. Strepsicrates smithiana Walsingham (Lepidoptera, Tortricidae: first record from Chile and a newly documented host plant

    Directory of Open Access Journals (Sweden)

    Héctor A. Vargas

    2012-09-01

    Full Text Available Strepsicrates smithiana Walsingham (Lepidoptera, Tortricidae: first record from Chile and a newly documented host plant. Strepsicrates smithiana Walsingham, 1892 (Lepidoptera, Tortricidae is recorded for the first time from Chile. Male and female adults were reared from leaf-tying larvae collected on Myrica pavonis (Myricaceae, which is a new host plant record for S. smithiana.

  12. Evaluation of soil characteristics potentially affecting arsenic concentration in paddy rice (Oryza sativa L.)

    International Nuclear Information System (INIS)

    Bogdan, Katja; Schenk, Manfred K.

    2009-01-01

    Paddy rice may contribute considerably to the human intake of As. The knowledge of soil characteristics affecting the As content of the rice plant enables the development of agricultural measures for controlling As uptake. During field surveys in 2004 and 2006, plant samples from 68 fields (Italy, Po-area) revealed markedly differing As concentration in polished rice. The soil factors total As (aquaregia) , pH, grain size fractions, total C, plant available P (CAL) , poorly crystalline Fe (oxal.) and plant available Si (Na-acetate) content that potentially affect As content of rice were determined. A multiple linear regression analysis showed a significant positive influence of the total As (aquaregia) and plant available P (CAL) content and a negative influence of the poorly crystalline Fe (oxal.) content of the soil on the As content in polished rice and rice straw. Si concentration in rice straw varied widely and was negatively related to As content in straw and polished rice. - Field selection for total As, poorly crystalline Fe and plant available P in soil might contribute to control As content of paddy rice.

  13. Hormonal regulation of floret closure of rice (Oryza sativa.

    Directory of Open Access Journals (Sweden)

    Youming Huang

    Full Text Available Plant hormones play important roles in regulating every aspect of growth, development, and metabolism of plants. We are interested in understanding hormonal regulation of floret opening and closure in plants. This is a particularly important problem for hybrid rice because regulation of flowering time is vitally important in hybrid rice seed production. However, little was known about the effects of plant hormones on rice flowering. We have shown that jasmonate and methyl jasmonate play significant roles in promoting rice floret opening. In this study, we investigated the effects of auxins including indole-3-acidic acid (IAA, indole-3-butyric acid (IBA, 1-naphthalene-acetic acid (NAA, 2,4-dichlorophenoxy acetic acid (2,4-D and 3,6-dichloro-2-methoxybenzoic acid (DIC and abscisic acid (ABA on floret closure of four fertile and three sterile varieties of rice. The results from field studies in three growing seasons in 2013-2015 showed that the percentages of closed florets were significantly lower in plants treated with IAA, IBA, 2,4-D, DIC and NAA and that the durations of floret opening were significantly longer in plants treated with the same auxins. The auxins exhibited time- and concentration-dependant effects on floret closure. ABA displayed opposite effects of auxins because it increased the percentages of floret closure and decreased the length of floret opening of rice varieties. The degree of auxin-inhibiting and ABA-promoting effects on floret closure was varied somewhat but not significantly different among the rice varieties. Endogenous IAA levels were the highest in florets collected shortly before opening followed by a sharp decline in florets with maximal angles of opening and a significant jump of IAA levels shortly after floret closure in both fertile and sterile rice plants. ABA levels showed an opposite trend in the same samples. Our results showed that auxins delayed but ABA promoted the closure of rice floret regardless of

  14. Hormonal regulation of floret closure of rice (Oryza sativa)

    Science.gov (United States)

    Huang, Youming; Zeng, Xiaochun

    2018-01-01

    Plant hormones play important roles in regulating every aspect of growth, development, and metabolism of plants. We are interested in understanding hormonal regulation of floret opening and closure in plants. This is a particularly important problem for hybrid rice because regulation of flowering time is vitally important in hybrid rice seed production. However, little was known about the effects of plant hormones on rice flowering. We have shown that jasmonate and methyl jasmonate play significant roles in promoting rice floret opening. In this study, we investigated the effects of auxins including indole-3-acidic acid (IAA), indole-3-butyric acid (IBA), 1-naphthalene-acetic acid (NAA), 2,4-dichlorophenoxy acetic acid (2,4-D) and 3,6-dichloro-2-methoxybenzoic acid (DIC) and abscisic acid (ABA) on floret closure of four fertile and three sterile varieties of rice. The results from field studies in three growing seasons in 2013–2015 showed that the percentages of closed florets were significantly lower in plants treated with IAA, IBA, 2,4-D, DIC and NAA and that the durations of floret opening were significantly longer in plants treated with the same auxins. The auxins exhibited time- and concentration-dependant effects on floret closure. ABA displayed opposite effects of auxins because it increased the percentages of floret closure and decreased the length of floret opening of rice varieties. The degree of auxin-inhibiting and ABA-promoting effects on floret closure was varied somewhat but not significantly different among the rice varieties. Endogenous IAA levels were the highest in florets collected shortly before opening followed by a sharp decline in florets with maximal angles of opening and a significant jump of IAA levels shortly after floret closure in both fertile and sterile rice plants. ABA levels showed an opposite trend in the same samples. Our results showed that auxins delayed but ABA promoted the closure of rice floret regardless of the varieties

  15. Effects of Soil Veterinary Antibiotics Pollution on Rice Growth

    Directory of Open Access Journals (Sweden)

    XU Qiu-tong

    2016-01-01

    Full Text Available To understand the potential effect of soil veterinary antibiotics pollution on the growth of rice, a main food crop in China, oxytetracycline which was used widely in livestock and poultry breeding was selected to test the effects of different levels of soil antibiotics pollution on growth and yield of rice plant at both seedling and growth periods. Relationship between oxytetracycline accumulated in different organs of rice plant and oxytetracycline pollution levels in the soil was characterized. The results showed that the effects of soil oxytetracycline pollution on rice growth mainly occurred at the seedling stage, and the effect on the underground part was obviously greater than the above-ground part of rice. Significant negative effects on biomass of the underground part of rice, root activity, and chlorophyll content and oxidase activity of the leave at the seedling stage were found when soil oxytetracycline pollution concentrations was over 30 mg·kg-1. The consequence from the impact of soil oxytetracycline pollution on rice seedling could be extended to the whole growth period of the plant, which could reduce the number of tiller and rice yield. Oxytetracycline accumulated in various organs of rice plant was in the sequence of root> leaf> stem> grain. Rice roots had low capacity to uptake oxytetracycline from the soil, the transfer capacity of oxytetracycline from the roots to leaf, stem, and grain was also weak. Considering the low oxytetracycline pollution levels in most of current actual farmland soils (less than 10 mg·kg-1 and lower accumulation character of oxytetracycline in the grain, it is thought that the direct damage of soil oxytetracycline pollution on rice production is small.

  16. Rice Yellow Mottle Virus stress responsive genes from susceptible and tolerant rice genotypes

    Directory of Open Access Journals (Sweden)

    Siré Christelle

    2008-03-01

    Full Text Available Abstract Background The effects of viral infection involve concomitant plant gene variations and cellular changes. A simple system is required to assess the complexity of host responses to viral infection. The genome of the Rice yellow mottle virus (RYMV is a single-stranded RNA with a simple organisation. It is the most well-known monocotyledon virus model. Several studies on its biology, structure and phylogeography have provided a suitable background for further genetic studies. 12 rice chromosome sequences are now available and provide strong support for genomic studies, particularly physical mapping and gene identification. Results The present data, obtained through the cDNA-AFLP technique, demonstrate differential responses to RYMV of two different rice cultivars, i.e. susceptible IR64 (Oryza sativa indica, and partially resistant Azucena (O. s. japonica. This RNA profiling provides a new original dataset that will enable us to gain greater insight into the RYMV/rice interaction and the specificity of the host response. Using the SIM4 subroutine, we took the intron/exon structure of the gene into account and mapped 281 RYMV stress responsive (RSR transcripts on 12 rice chromosomes corresponding to 234 RSR genes. We also mapped previously identified deregulated proteins and genes involved in partial resistance and thus constructed the first global physical map of the RYMV/rice interaction. RSR transcripts on rice chromosomes 4 and 10 were found to be not randomly distributed. Seven genes were identified in the susceptible and partially resistant cultivars, and transcripts were colocalized for these seven genes in both cultivars. During virus infection, many concomitant plant gene expression changes may be associated with host changes caused by the infection process, general stress or defence responses. We noted that some genes (e.g. ABC transporters were regulated throughout the kinetics of infection and differentiated susceptible and

  17. Rice Seed Priming with Picomolar Rutin Enhances Rhizospheric Bacillus subtilis CIM Colonization and Plant Growth.

    Directory of Open Access Journals (Sweden)

    Akanksha Singh

    Full Text Available The effect of rutin, a bioflavonoid on the growth and biofilm formation of Bacillus subtilis strain CIM was investigated. In addition to swimming, swarming, and twitching potentials of B. subtilis CIM (BS, one picomolar (1 pM of rutin was also observed to boost the biofilm forming ability of the bacterium. Bio-priming of rice seeds with BS and rutin not only augmented root and shoot lengths but also the photosynthetic pigments like chlorophyll and carotenoid. Similarly, high accumulation of phenolic and flavonoid contents was observed in the leaves. Fluorescent microscopic images revealed that BS plus rutin enhanced callose deposition in the leaves. It was also established that the least formation of reactive oxygen species in BS plus rutin treated rice plants was due to higher free radicals scavenging activity and total antioxidant potential. The results highlight chemo attractant nature of BS towards rutin, which by enhancing biofilm formation and root colonization indirectly strengthened the plants' defensive state.

  18. Combined effects of plant extracts in inhibiting the growth of Bacillus cereus in reconstituted infant rice cereal.

    Science.gov (United States)

    Jun, Hyejung; Kim, Jinsol; Bang, Jihyun; Kim, Hoikyung; Beuchat, Larry R; Ryu, Jee-Hoon

    2013-01-01

    A study was done to determine the potential use of plant extracts to inhibit the growth of Bacillus cereus in reconstituted infant rice cereal. A total of 2116 extracts were screened for inhibitory activity against B. cereus using an agar well diffusion assay. The minimal inhibitory concentrations (MIC) and minimal lethal concentrations (MLC) of 14 promising extracts in tryptic soy broth (TSB) were determined. Dryopteris erythrosora (autumn fern) root extract showed the lowest MIC (0.0156 mg/ml), followed by Siegesbeckia glabrescens (Siegesbeckia herb) leaf (0.0313 mg/ml), Morus alba (white mulberry) cortex (0.0313 mg/ml), Carex pumila (sand sedge) root (0.0625 mg/ml), and Citrus paradisi (grapefruit) seed (0.0625 mg/ml) extracts. The order of MLCs of extracts was D. erythrosora root (0.0156 mg/ml)extracts against B. cereus in TSB were determined using a checkerboard assay. A combination of D. erythrosora and C. pumila extracts showed a partial synergistic inhibition, with a fractional inhibitory concentration index (FICI) of 0.75. Single and combined inhibitory activities of selected plant extracts against B. cereus in reconstituted infant rice cereal were investigated. The MICs of S. glabrescens, M. alba, D. erythrosora, and C. pumila extracts against B. cereus were 1.0, 2.0, 2.0, and 8.0mg/ml, respectively. A combination of D. erythrosora (1.00 mg/ml) and C. pumila (1.00 mg/ml) extracts showed a partial synergistic effect (FICI 0.63) in inhibiting the growth of B. cereus. Results indicate that by combining extracts, the amounts of D. erythrosora and C. pumila extracts can be reduced by 50% and 87.5%, respectively, compared with individual extracts, and give similar inhibitory activity in reconstituted infant rice cereal. Sensory evaluation showed that supplementing reconstituted infant rice cereal with plant extracts reduces sensorial quality. These observations will be useful when developing and applying interventions using natural plant extracts to inhibit B

  19. Spatio-Temporal Changes in the Rice Planting Area and Their Relationship to Climate Change in Northeast China: A Model-Based Analysis

    NARCIS (Netherlands)

    Xia, T.; Wu, W.; Zhou, Q.; Yu, Q.; Verburg, P.H.; Yang, P.; Lu, Z.F.; Tang, H.J.

    2014-01-01

    Rice is one of the most important grain crops in Northeast China (NEC) and its cultivation is sensitive to climate change. This study aimed to explore the spatio-temporal changes in the NEC rice planting area over the period of 1980-2010 and to analyze their relationship to climate change. To do so,

  20. The rice dwarf virus P2 protein interacts with ent-kaurene oxidases in vivo, leading to reduced biosynthesis of gibberellins and rice dwarf symptoms.

    Science.gov (United States)

    Zhu, Shifeng; Gao, Feng; Cao, Xuesong; Chen, Mao; Ye, Gongyin; Wei, Chunhong; Li, Yi

    2005-12-01

    The mechanisms of viral diseases are a major focus of biology. Despite intensive investigations, how a plant virus interacts with host factors to cause diseases remains poorly understood. The Rice dwarf virus (RDV), a member of the genus Phytoreovirus, causes dwarfed growth phenotypes in infected rice (Oryza sativa) plants. The outer capsid protein P2 is essential during RDV infection of insects and thus influences transmission of RDV by the insect vector. However, its role during RDV infection within the rice host is unknown. By yeast two-hybrid and coimmunoprecipitation assays, we report that P2 of RDV interacts with ent-kaurene oxidases, which play a key role in the biosynthesis of plant growth hormones gibberellins, in infected plants. Furthermore, the expression of ent-kaurene oxidases was reduced in the infected plants. The level of endogenous GA1 (a major active gibberellin in rice vegetative tissues) in the RDV-infected plants was lower than that in healthy plants. Exogenous application of GA3 to RDV-infected rice plants restored the normal growth phenotypes. These results provide evidence that the P2 protein of RDV interferes with the function of a cellular factor, through direct physical interactions, that is important for the biosynthesis of a growth hormone leading to symptom expression. In addition, the interaction between P2 and rice ent-kaurene oxidase-like proteins may decrease phytoalexin biosynthesis and make plants more competent for virus replication. Moreover, P2 may provide a novel tool to investigate the regulation of GA metabolism for plant growth and development.

  1. Multifunctionality and diversity of GDSL esterase/lipase gene family in rice (Oryza sativa L. japonica genome: new insights from bioinformatics analysis

    Directory of Open Access Journals (Sweden)

    Chepyshko Hanna

    2012-07-01

    Full Text Available Abstract Background GDSL esterases/lipases are a newly discovered subclass of lipolytic enzymes that are very important and attractive research subjects because of their multifunctional properties, such as broad substrate specificity and regiospecificity. Compared with the current knowledge regarding these enzymes in bacteria, our understanding of the plant GDSL enzymes is very limited, although the GDSL gene family in plant species include numerous members in many fully sequenced plant genomes. Only two genes from a large rice GDSL esterase/lipase gene family were previously characterised, and the majority of the members remain unknown. In the present study, we describe the rice OsGELP (Oryza sativa GDSL esterase/lipase protein gene family at the genomic and proteomic levels, and use this knowledge to provide insights into the multifunctionality of the rice OsGELP enzymes. Results In this study, an extensive bioinformatics analysis identified 114 genes in the rice OsGELP gene family. A complete overview of this family in rice is presented, including the chromosome locations, gene structures, phylogeny, and protein motifs. Among the OsGELPs and the plant GDSL esterase/lipase proteins of known functions, 41 motifs were found that represent the core secondary structure elements or appear specifically in different phylogenetic subclades. The specification and distribution of identified putative conserved clade-common and -specific peptide motifs, and their location on the predicted protein three dimensional structure may possibly signify their functional roles. Potentially important regions for substrate specificity are highlighted, in accordance with protein three-dimensional model and location of the phylogenetic specific conserved motifs. The differential expression of some representative genes were confirmed by quantitative real-time PCR. The phylogenetic analysis, together with protein motif architectures, and the expression profiling were

  2. Transcriptional changes of rice in response to rice black-streaked dwarf virus.

    Science.gov (United States)

    Ahmed, Mohamed M S; Ji, Wen; Wang, Muyue; Bian, Shiquan; Xu, Meng; Wang, Weiyun; Zhang, Jiangxiang; Xu, Zhihao; Yu, Meimei; Liu, Qiaoquan; Zhang, Changquan; Zhang, Honggen; Tang, Shuzhu; Gu, Minghong; Yu, Hengxiu

    2017-09-10

    Rice black-streaked dwarf virus (RBSDV), a member of the genus Fijivirus in the family Reoviridae, causes significant economic losses in rice production in China and many other Asian countries. Although a great deal of effort has been made to elucidate the interactions among the virus, insect vectors, host and environmental conditions, few RBSDV proteins involved in pathogenesis have been identified, and the biological basis of disease development in rice remains largely unknown. Transcriptomic information associated with the disease development in rice would be helpful to unravel the biological mechanism. To determine how the rice transcriptome changes in response to RBSDV infection, we carried out RNA-Seq to perform a genome-wide gene expression analysis of a susceptible rice cultivar KTWYJ3. The transcriptomes of RBSDV-infected samples were compared to those of RBSDV-free (healthy) at two time points (time points are represented by group I and II). The results derived from the differential expression analysis in RBSDV-infected libraries vs. healthy ones in group I revealed that 102 out of a total of 281 significant differentially expressed genes (DEGs) were up-regulated and 179 DEGs were down-regulated. Of the 2592 identified DEGs in group II, 1588 DEGs were up-regulated and 1004 DEGs were down-regulated. A total of 66 DEGs were commonly identified in both groups. Of these 66 DEGs, expression patterns for 36 DEGs were similar in both groups. Our analysis demonstrated that some genes related to disease defense and stress resistance were up-regulated while genes associated with chloroplast were down-regulated in response to RBSDV infection. In addition, some genes associated with plant-height were differentially expressed. This result indicates those genes might be involved in dwarf symptoms caused by RBSDV. Taken together, our results provide a genome-wide transcriptome analysis for rice plants in response to RBSDV infection which may contribute to the

  3. RPAN: rice pan-genome browser for ∼3000 rice genomes.

    Science.gov (United States)

    Sun, Chen; Hu, Zhiqiang; Zheng, Tianqing; Lu, Kuangchen; Zhao, Yue; Wang, Wensheng; Shi, Jianxin; Wang, Chunchao; Lu, Jinyuan; Zhang, Dabing; Li, Zhikang; Wei, Chaochun

    2017-01-25

    A pan-genome is the union of the gene sets of all the individuals of a clade or a species and it provides a new dimension of genome complexity with the presence/absence variations (PAVs) of genes among these genomes. With the progress of sequencing technologies, pan-genome study is becoming affordable for eukaryotes with large-sized genomes. The Asian cultivated rice, Oryza sativa L., is one of the major food sources for the world and a model organism in plant biology. Recently, the 3000 Rice Genome Project (3K RGP) sequenced more than 3000 rice genomes with a mean sequencing depth of 14.3×, which provided a tremendous resource for rice research. In this paper, we present a genome browser, Rice Pan-genome Browser (RPAN), as a tool to search and visualize the rice pan-genome derived from 3K RGP. RPAN contains a database of the basic information of 3010 rice accessions, including genomic sequences, gene annotations, PAV information and gene expression data of the rice pan-genome. At least 12 000 novel genes absent in the reference genome were included. RPAN also provides multiple search and visualization functions. RPAN can be a rich resource for rice biology and rice breeding. It is available at http://cgm.sjtu.edu.cn/3kricedb/ or http://www.rmbreeding.cn/pan3k. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

  4. Differences in the arbuscular mycorrhizal fungi-improved rice resistance to low temperature at two N levels: aspects of N and C metabolism on the plant side.

    Science.gov (United States)

    Liu, Zhi-Lei; Li, Yuan-Jing; Hou, Hong-Yan; Zhu, Xian-Can; Rai, Vandna; He, Xing-Yuan; Tian, Chun-Jie

    2013-10-01

    We performed an experiment to determine how N and C metabolism is involved in the low-temperature tolerance of mycorrhizal rice (Oryza sativa) at different N levels and examined the possible signaling molecules involved in the stress response of mycorrhizal rice. Pot cultures were performed, and mycorrhizal rice growth was evaluated based on treatments at two temperatures (15 °C and 25 °C) and two N levels (20 mg pot(-1) and 50 mg pot(-1)). The arbuscular mycorrhizal fungi (AMF) colonization of rice resulted in different responses of the plants to low and high N levels. The mycorrhizal rice with the low N supplementation had more positive feedback from the symbiotic AMF, as indicated by accelerated N and C metabolism of rice possibly involving jasmonic acid (JA) and the up-regulation of enzyme activities for N and C metabolism. Furthermore, the response of the mycorrhizal rice plants to low temperature was associated with P uptake and nitric oxide (NO). Crown Copyright © 2013. Published by Elsevier Masson SAS. All rights reserved.

  5. Carbon nanomaterials alter plant physiology and soil bacterial community composition in a rice-soil-bacterial ecosystem.

    Science.gov (United States)

    Hao, Yi; Ma, Chuanxin; Zhang, Zetian; Song, Youhong; Cao, Weidong; Guo, Jing; Zhou, Guopeng; Rui, Yukui; Liu, Liming; Xing, Baoshan

    2018-01-01

    The aim of this study was to compare the toxicity effects of carbon nanomaterials (CNMs), namely fullerene (C 60 ), reduced graphene oxide (rGO) and multi-walled carbon nanotubes (MWCNTs), on a mini-ecosystem of rice grown in a loamy potted soil. We measured plant physiological and biochemical parameters and examined bacterial community composition in the CNMs-treated plant-soil system. After 30 days of exposure, all the three CNMs negatively affected the shoot height and root length of rice, significantly decreased root cortical cells diameter and resulted in shrinkage and deformation of cells, regardless of exposure doses (50 or 500 mg/kg). Additionally, at the high exposure dose of CNM, the concentrations of four phytohormones, including auxin, indoleacetic acid, brassinosteroid and gibberellin acid 4 in rice roots significantly increased as compared to the control. At the high exposure dose of MWCNTs and C 60 , activities of the antioxidant enzymes superoxide dismutase (SOD) and peroxidase (POD) in roots increased significantly. High-throughput sequencing showed that three typical CNMs had little effect on shifting the predominant soil bacterial species, but the presence of CNMs significantly altered the composition of the bacterial community. Our results indicate that different CNMs indeed resulted in environmental toxicity to rice and soil bacterial community in the rhizosphere and suggest that CNMs themselves and their incorporated products should be reasonably used to control their release/discharge into the environment to prevent their toxic effects on living organisms and the potential risks to food safety. Copyright © 2017 Elsevier Ltd. All rights reserved.

  6. The impact of herbicide-resistant rice technology on phenotypic diversity and population structure of United States weedy rice.

    Science.gov (United States)

    Burgos, Nilda Roma; Singh, Vijay; Tseng, Te Ming; Black, Howard; Young, Nelson D; Huang, Zhongyun; Hyma, Katie E; Gealy, David R; Caicedo, Ana L

    2014-11-01

    The use of herbicide-resistant (HR) Clearfield rice (Oryza sativa) to control weedy rice has increased in the past 12 years to constitute about 60% of rice acreage in Arkansas, where most U.S. rice is grown. To assess the impact of HR cultivated rice on the herbicide resistance and population structure of weedy rice, weedy samples were collected from commercial fields with a history of Clearfield rice. Panicles from each weedy type were harvested and tested for resistance to imazethapyr. The majority of plants sampled had at least 20% resistant offspring. These resistant weeds were 97 to 199 cm tall and initiated flowering from 78 to 128 d, generally later than recorded for accessions collected prior to the widespread use of Clearfield rice (i.e. historical accessions). Whereas the majority (70%) of historical accessions had straw-colored hulls, only 30% of contemporary HR weedy rice had straw-colored hulls. Analysis of genotyping-by-sequencing data showed that HR weeds were not genetically structured according to hull color, whereas historical weedy rice was separated into straw-hull and black-hull populations. A significant portion of the local rice crop genome was introgressed into HR weedy rice, which was rare in historical weedy accessions. Admixture analyses showed that HR weeds tend to possess crop haplotypes in the portion of chromosome 2 containing the ACETOLACTATE SYNTHASE gene, which confers herbicide resistance to Clearfield rice. Thus, U.S. HR weedy rice is a distinct population relative to historical weedy rice and shows modifications in morphology and phenology that are relevant to weed management. © 2014 American Society of Plant Biologists. All Rights Reserved.

  7. Study on the Potential of Rice Straws as a Supplementary Fuel in Very Small Power Plants in Thailand

    OpenAIRE

    Penwadee Cheewaphongphan; Agapol Junpen; Orachorn Kamnoet; Savitri Garivait

    2018-01-01

    Agricultural residue is a major raw material for renewable energy production, particularly heat production, in Thailand. Meanwhile, the process-based residue, such as bagasse, rice husk, wood residue, palm fiber, palm shell, and saw dust, is used as a fuel for energy production in the agro-industry. Hence, this study is intended to assess the net potential and capacity of alternative agricultural residues, specifically rice straws, to serve as the supplementary fuel for very small power plant...

  8. Melatonin is involved in skotomorphogenesis by regulating brassinosteroids biosynthesis in rice plants.

    Science.gov (United States)

    Hwang, Ok Jin; Back, Kyoungwhan

    2018-04-01

    Serotonin N-acetyltransferase (SNAT) is the penultimate enzyme in melatonin biosynthesis catalyzing the conversion of serotonin into N-acetylserotonin. In plants, SNAT is encoded by two isogenes of which SNAT1 is constitutively expressed and its overexpression confers increased yield in rice. However, the role of SNAT2 remains to be clarified. In contrast to SNAT1, the diurnal rhythm of SNAT2 mRNA expression peaks at night. In this study, transgenic rice plants in which SNAT2 expression was suppressed by RNAi technology showed a decrease in melatonin and a dwarf phenotype with erect leaves, reminiscent of brassinosteroids (BRs)-deficient mutants. Of note, the dwarf phenotype was dependent on the presence of dark, suggesting that melatonin is involved in dark growth (skotomorphogenesis). In support of this suggestion, SNAT2 RNAi lines exhibited photomorphogenic phenotypes such as inhibition of internodes and increased expression of light-inducible CAB genes in the dark. The causative gene for the melatonin-mediated BRs biosynthetic gene was DWARF4, a rate limiting BRs biosynthetic gene. Exogenous melatonin treatment induced several BRs biosynthetic genes, including DWARF4, D11, and RAVL1. As expected from the erect leaves, the SNAT2 RNAi lines produced less BRs than the wild type. Our results show for the first time that melatonin is a positive regulator of dark growth or shade outgrowth by regulating BR biosynthesis in plants. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

  9. Novel Chitinase Gene LOC_Os11g47510 from Indica Rice Tetep Provides Enhanced Resistance against Sheath Blight Pathogen Rhizoctonia solani in Rice

    Directory of Open Access Journals (Sweden)

    Tilak R. Sharma

    2017-04-01

    Full Text Available Sheath blight disease (ShB, caused by the fungus Rhizoctonia solani Kühn, is one of the most destructive diseases of rice (Oryza sativa L., causing substantial yield loss in rice. In the present study, a novel rice chitinase gene, LOC_Os11g47510 was cloned from QTL region of R. solani tolerant rice line Tetep and used for functional validation by genetic transformation of ShB susceptible japonica rice line Taipei 309 (TP309. The transformants were characterized using molecular and functional approaches. Molecular analysis by PCR using a set of primers specific to CaMv 35S promoter, chitinase and HptII genes confirmed the presence of transgene in transgenic plants which was further validated by Southern hybridization. Further, qRT-PCR analysis of transgenic plants showed good correlation between transgene expression and the level of sheath blight resistance among transformants. Functional complementation assays confirmed the effectiveness of the chitinase mediated resistance in all the transgenic TP309 plants with varying levels of enhanced resistance against R. solani. Therefore, the novel chitinase gene cloned and characterized in the present study from the QTL region of rice will be of significant use in molecular plant breeding program for developing sheath blight resistance in rice.

  10. A rice kinase-protein interaction map.

    Science.gov (United States)

    Ding, Xiaodong; Richter, Todd; Chen, Mei; Fujii, Hiroaki; Seo, Young Su; Xie, Mingtang; Zheng, Xianwu; Kanrar, Siddhartha; Stevenson, Rebecca A; Dardick, Christopher; Li, Ying; Jiang, Hao; Zhang, Yan; Yu, Fahong; Bartley, Laura E; Chern, Mawsheng; Bart, Rebecca; Chen, Xiuhua; Zhu, Lihuang; Farmerie, William G; Gribskov, Michael; Zhu, Jian-Kang; Fromm, Michael E; Ronald, Pamela C; Song, Wen-Yuan

    2009-03-01

    Plants uniquely contain large numbers of protein kinases, and for the vast majority of the 1,429 kinases predicted in the rice (Oryza sativa) genome, little is known of their functions. Genetic approaches often fail to produce observable phenotypes; thus, new strategies are needed to delineate kinase function. We previously developed a cost-effective high-throughput yeast two-hybrid system. Using this system, we have generated a protein interaction map of 116 representative rice kinases and 254 of their interacting proteins. Overall, the resulting interaction map supports a large number of known or predicted kinase-protein interactions from both plants and animals and reveals many new functional insights. Notably, we found a potential widespread role for E3 ubiquitin ligases in pathogen defense signaling mediated by receptor-like kinases, particularly by the kinases that may have evolved from recently expanded kinase subfamilies in rice. We anticipate that the data provided here will serve as a foundation for targeted functional studies in rice and other plants. The application of yeast two-hybrid and TAPtag analyses for large-scale plant protein interaction studies is also discussed.

  11. Yield and Quality Traits of some Rice Mutant Lines as Affected by Different Nitrogen Levels

    International Nuclear Information System (INIS)

    Sobieh, S.El-S.S.

    2007-01-01

    Two field experiments were carried out during two growing seasons (2004 and 2005) at a farm located in Sahafa village, Sharkia Governorate, to evaluate newly rice mutants comparing with the local cultivar Sakha 104 for yield and quality characteristics as affected by nitrogen fertilizer levels. The obtained results showed that: 1- Rice grain yield and yield attributes were significantly increased with increasing N levels from 23 to 69 kg N fed '. 2- Both mutant MG 16 and MS 6 exhibited highly significant increases in mean values for yield attributes except for number of panicles/m2, as compared with the local cultivar Sakha 104. 3- Percentage of yield increases were 26.85 and 16.21 % for mutant MG16 and MS6 comparing with the local variety Sakha 104, respectively. Mutant MG 16 showed the highest mean values for plant height, panicle length, number of grains per panicle, panicle weight, 1000-grain weight, grain yield/fed, and straw yield/fed, as compared with the mutant MS 6 and Sakha 104. 4- Hulling and milling % were significantly increased as increasing of nitrogen levels from 23 to 69 kg N fed 1 , whereas head rice, gel consistency and amylose content were not significantly affect. 5- Significant differences were obtained between the three rice genotypes for hulling %, milling %, head rice %, amylose content and gel consistency

  12. Medicinal plants - a potent antibacterial source against bacterial leaf blight (BLB) of rice

    International Nuclear Information System (INIS)

    Jabeen, R.

    2011-01-01

    The antibacterial potential of indigenous medicinal plants as alternative chemical pesticides for controlling bacterial leaf blight (BLB) of rice was investigated. Twenty-five different species of medicinal plants were collected from various sites in Pakistan. Decoctions of all medicinal plant species were screened by the disc plate diffusion method for testing the susceptibility of an aggressive isolate of Xanthomonas oryzae pv. oryzae (Xoo 105). Out of twenty five medicinal plants, Thuja orientalis (cone + leaves), Azadirachta indica (seeds + fruits), Amomum subulatum (fruits), Terminalia chebula (fruits), Terminalia bellirica (fruits), Anethum graveolens (fruits) and Ferula assa-foetida (fruits) decoctions showed significant activity. The efficacy of decoctions from six promising plants were further tested through detached leaf, glasshouse and field assays. A decoction of Terminalia chebula demonstrated the highest effectiveness in terms of regulating BLB in the plants both under laboratory and field conditions. Bioactive fractions of Terminalia chebula were purified, characterized and tentatively identified as allegic acid. (author)

  13. Impacts of rapeseed dregs on Cd availability in contaminated acid soil and Cd translocation and accumulation in rice plants.

    Science.gov (United States)

    Yang, Wen-Tao; Gu, Jiao-Feng; Zou, Jia-Ling; Zhou, Hang; Zeng, Qing-Ru; Liao, Bo-Han

    2016-10-01

    The objective of the present study was to investigate the effects of rapeseed dregs (RSD, a commonly organic fertilizer in rural China) at application rates of 0, 0.75, 1.5, and 3.0 % on Cd availability in soil and its accumulation in rice plants (Oryza sativa L., Xiangwanxian 12 # , and Weiyou 46 # ) by means of a pot experiment. The results showed that application of RSD resulted in a sharp decrease in the soil TCLP-extractable Cd content. However, the soil TCLP-extractable Cd content in amended soil gradually increased during the rice growing period. Application of RSD significantly increased Cd transport from root to shoot and the amount of Cd accumulated in the aerial part. RSD was an effective organic additive for increasing rice grain yield, but total Cd content in rice grain was also increased. At an application rate of 1.5-3.0 % RSD, the total Cd content in Weiyou 46 # brown rice was 0.27-0.31 mg kg -1 , which exceeded the standard safe limit (0.2 mg kg -1 ) and was also higher than that of Xiangwanxian 12 # (0.04-0.14 mg kg -1 ). Therefore, Weiyou 46 # had a higher dietary risk than Xiangwanxian 12 # with RSD application. We do not recommend planting Weiyou 46 # and applying more than 0.75 % RSD in Cd-contaminated paddy fields.

  14. Defensive Responses of Rice Genotypes for Resistance Against Rice Leaffolder Cnaphalocrocis medinalis

    Directory of Open Access Journals (Sweden)

    M. PUNITHAVALLI

    2013-09-01

    Full Text Available The experiment was carried out to assess the reaction of different categories of rice genotypes viz., resistant, susceptible, hybrid, scented, popular and wild in response to the infestation by rice leaffolder (RLF, Cnaphalocrocis medinalis (Guenee and to explore the possible use of these genotypes in developing RLF-resistant rice varieties. The changes of various biochemical constituents such as leaf soluble protein, phenol, ortho-dihydroxy phenol, tannin and enzymes viz., peroxidase, phenyl alanine ammonia lyase (PAL were assessed spectrophotometrically in all the rice genotypes before and after RLF infestation. The protein profile was analyzed using sodium dodecyl sulphate-poly acrylamide gel electrophoresis (SDS-PAGE method. A significant constituent of biochemical content such as tannin, phenol and ortho-dihydroxy phenol has been increased along with enzyme activities of peroxidase and PAL in the infested resistant (Ptb 33, TKM6 and LFR831311 and wild rice genotypes (Oryza minuta and O. rhizomatis. A decrease in leaf protein content was evident invariably in all the infested rice genotypes. It is also evident that the contents of biochemicals such as phenol, ortho-dihydroxy phenol and tannin were negatively correlated with leaffolder damage. However, leaf protein content was positively correlated with the damage by rice leaffolder. SDS-PAGE analysis for total protein profiling of healthy and C. medinalis-infested genotypes revealed the enhanced expression of a high molecular weight (> 97 kDa protein in all the genotypes. Besides, there was also an increased induction of a 38 kDa protein in C. medinalis infested resistant genotypes, which was absent in uninfested plants. The present investigation proved that the elevated levels of biochemicals and enzymes may play a vital role in rice plants resistance to RLF.

  15. Effects of radiation on model plant rice - OMICS: Recent progress and future prospects

    International Nuclear Information System (INIS)

    Rakwal, Randeep; Shibato, Junko; Agrawal, Ganesh Kumar; Imanaka, Tetsuji; Fukutani, Satoshi; Tamogami, Shigeru; Endo, Satoru; Sahoo, Sarat Kumar; Kimura, Shinzo

    2011-01-01

    This is the age of functional genomics, where genomes to high-throughput technologies and to the phenotype are making inroads into various biological questions and problems. In this report, I along with my co-workers will present an outline into the omics approaches, focusing on the global gene expression profiling (DNA microarray technique), plants and the environment, and culminating in the use of genomics to analyze the effects of radiation on plant life. For this, rice (Oryza sativa L.) geonome model and monocot cereal crop plant will be used as an example. It is our hope that use of both model and non-model plants in conjunction with high-throughput transcriptomics approaches will lead the way for unraveling radiation responses in plants, setting the stage for further research on this important aspect of our environment with direct and indirect impact on human life and civilization. (author)

  16. Expression of BrD1, a plant defensin from Brassica rapa, confers resistance against brown planthopper (Nilaparvata lugens) in transgenic rices.

    Science.gov (United States)

    Choi, Man-Soo; Kim, Yul-Ho; Park, Hyang-Mi; Seo, Bo-Yoon; Jung, Jin-Kyo; Kim, Sun-Tae; Kim, Min-Chul; Shin, Dong-Bum; Yun, Hong-Tai; Choi, Im-Soo; Kim, Chung-Kon; Lee, Jang-Yong

    2009-08-31

    Plant defensins are small (5-10 kDa) basic peptides thought to be an important component of the defense pathway against fungal and/or bacterial pathogens. To understand the role of plant defensins in protecting plants against the brown planthopper, a type of insect herbivore, we isolated the Brassica rapa Defensin 1 (BrD1) gene and introduced it into rice (Oryza sativa L.) to produce stable transgenic plants. The BrD1 protein is homologous to other plant defensins and contains both an N-terminal endoplasmic reticulum signal sequence and a defensin domain, which are highly conserved in all plant defensins. Based on a phylogenetic analysis of the defensin domain of various plant defensins, we established that BrD1 belongs to a distinct subgroup of plant defensins. Relative to the wild type, transgenic rices expressing BrD1 exhibit strong resistance to brown planthopper nymphs and female adults. These results suggest that BrD1 exhibits insecticidal activity, and might be useful for developing cereal crop plants resistant to sap-sucking insects, such as the brown planthopper.

  17. Mapping paddy rice planting areas through time series analysis of MODIS land surface temperature and vegetation index data.

    Science.gov (United States)

    Zhang, Geli; Xiao, Xiangming; Dong, Jinwei; Kou, Weili; Jin, Cui; Qin, Yuanwei; Zhou, Yuting; Wang, Jie; Menarguez, Michael Angelo; Biradar, Chandrashekhar

    2015-08-01

    Knowledge of the area and spatial distribution of paddy rice is important for assessment of food security, management of water resources, and estimation of greenhouse gas (methane) emissions. Paddy rice agriculture has expanded rapidly in northeastern China in the last decade, but there are no updated maps of paddy rice fields in the region. Existing algorithms for identifying paddy rice fields are based on the unique physical features of paddy rice during the flooding and transplanting phases and use vegetation indices that are sensitive to the dynamics of the canopy and surface water content. However, the flooding phenomena in high latitude area could also be from spring snowmelt flooding. We used land surface temperature (LST) data from the Moderate Resolution Imaging Spectroradiometer (MODIS) sensor to determine the temporal window of flooding and rice transplantation over a year to improve the existing phenology-based approach. Other land cover types (e.g., evergreen vegetation, permanent water bodies, and sparse vegetation) with potential influences on paddy rice identification were removed (masked out) due to their different temporal profiles. The accuracy assessment using high-resolution images showed that the resultant MODIS-derived paddy rice map of northeastern China in 2010 had a high accuracy (producer and user accuracies of 92% and 96%, respectively). The MODIS-based map also had a comparable accuracy to the 2010 Landsat-based National Land Cover Dataset (NLCD) of China in terms of both area and spatial pattern. This study demonstrated that our improved algorithm by using both thermal and optical MODIS data, provides a robust, simple and automated approach to identify and map paddy rice fields in temperate and cold temperate zones, the northern frontier of rice planting.

  18. Effective Suppression of Methane Emission by 2-Bromoethanesulfonate during Rice Cultivation.

    Science.gov (United States)

    Waghmode, Tatoba R; Haque, Md Mozammel; Kim, Sang Yoon; Kim, Pil Joo

    2015-01-01

    2-bromoethanesulfonate (BES) is a structural analogue of coenzyme M (Co-M) and potent inhibitor of methanogenesis. Several studies confirmed, BES can inhibit CH4 prodcution in rice soil, but the suppressing effectiveness of BES application on CH4 emission under rice cultivation has not been studied. In this pot experiment, different levels of BES (0, 20, 40 and 80 mg kg-1) were applied to study its effect on CH4 emission and plant growth during rice cultivation. Application of BES effectively suppressed CH4 emission when compared with control soil during rice cultivation. The CH4 emission rates were significantly (Price cultivation. A rice plant growth and yield parameters were not affected by BES application. The maximum CH4 reduction (49% reduction over control) was found at 80 mg kg-1 BES application during rice cultivation. It is, therefore, concluded that BES could be a suitable soil amendment for reducing CH4 emission without affecting rice plant growth and productivity during rice cultivation.

  19. Transfer Factor of Co-60 and Cs-137 from Agricultural Soil to Agricultural Plant of Rice and Beans

    International Nuclear Information System (INIS)

    Suzie, D; Cerdas, T; Susilah, S; Umbara, H

    1996-01-01

    A study to estimate transfer factor of Co-60 and Cs-137 radionuclides from agricultural soil to agricultural plant of beans and rice in Serpong Nuclear Research Center Complex has been carried out. The soil used was that from off site Serpong Nuclear Research Center Complex, the agricultural plant samples were rice with variety of Cisadane, Situgintung, Seratus Malam, and Atomita 4, and for beans were peanut with variety of AH 1781 SI (parent) and A 20 psj (daughter), soybean with variety of Kerinci (parent) and Camar (daughter), and greenbean with variety of Manyar (parent) and Camar (daughter), which obtained from PAIR-BATAN Pasar Jumat. 10 kg of soil was put on the container which layered with plastic. The soil was contaminated with Co-60 and Cs-137 with activity concentration of 10 Bq/kg. Samples were counted with gamma spectrometer. The value of transfer factor was obtained by comparing activity concentration of agricultural plant with that of agricultural soil. The results of transfer factor of Co-60 for rice and beans were 0.12 x 10-2 and 1.05 x 10-2, respectively and the transfer factor of Cs-137 for rice and beans were 0.83 x 10-2 and 2.09 x 10-2, respectively. The gamma emmitter radionuclides counted from the soil of Serpong Nuclear Research Center Complex were Th-228, U-235, Ra-226, Ac-228 and K-40, with activities concentration as background were 35.39 - 101.60; 32.14 - 74.50; 23.37 - 28.57; 20.90 - 31.28 and 5.97 - 8.13 Bq/kg, respectively

  20. Plant height revertants of Dominant Semidwarf mutant rice created by low-energy ion irradiation

    Energy Technology Data Exchange (ETDEWEB)

    Liu Binmei [Key Laboratory of Ion Beam Bioengineering, Institute of Plasma Physics, Chinese Academy of Sciences, Hefei 230031 (China); Wu Yuejin [Key Laboratory of Ion Beam Bioengineering, Institute of Plasma Physics, Chinese Academy of Sciences, Hefei 230031 (China)], E-mail: yjwu@ipp.ac.cn; Xu Xue; Song, M.; Zhao, M. [Key Laboratory of Ion Beam Bioengineering, Institute of Plasma Physics, Chinese Academy of Sciences, Hefei 230031 (China); Fu, X.D. [Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101 (China)

    2008-04-15

    Dominant Semidwarf mutant rice (Sdd) was obtained from its wild type (WT) by irradiation with a low-energy ion beam. Six tall revertants of Sdd were induced by irradiation. The revertants restored the plant height to that of WT plants. Investigation of the agronomic character and genetic analysis indicate that the revertants are similar to WT plants with putative different inherited mutations. The revertants were checked for DNA differences using the simple sequence repeat technique. Among 408 such primers used, only 2 primers detected mutation sites in the revertants, which provided the molecular evidence for the revertants induced from Sdd. This study indicates that ion irradiation may be used as a mutagen to create revertants for plant architecture studies and could be a new application.

  1. The Rice Dwarf Virus P2 Protein Interacts with ent-Kaurene Oxidases in Vivo, Leading to Reduced Biosynthesis of Gibberellins and Rice Dwarf Symptoms1

    Science.gov (United States)

    Zhu, Shifeng; Gao, Feng; Cao, Xuesong; Chen, Mao; Ye, Gongyin; Wei, Chunhong; Li, Yi

    2005-01-01

    The mechanisms of viral diseases are a major focus of biology. Despite intensive investigations, how a plant virus interacts with host factors to cause diseases remains poorly understood. The Rice dwarf virus (RDV), a member of the genus Phytoreovirus, causes dwarfed growth phenotypes in infected rice (Oryza sativa) plants. The outer capsid protein P2 is essential during RDV infection of insects and thus influences transmission of RDV by the insect vector. However, its role during RDV infection within the rice host is unknown. By yeast two-hybrid and coimmunoprecipitation assays, we report that P2 of RDV interacts with ent-kaurene oxidases, which play a key role in the biosynthesis of plant growth hormones gibberellins, in infected plants. Furthermore, the expression of ent-kaurene oxidases was reduced in the infected plants. The level of endogenous GA1 (a major active gibberellin in rice vegetative tissues) in the RDV-infected plants was lower than that in healthy plants. Exogenous application of GA3 to RDV-infected rice plants restored the normal growth phenotypes. These results provide evidence that the P2 protein of RDV interferes with the function of a cellular factor, through direct physical interactions, that is important for the biosynthesis of a growth hormone leading to symptom expression. In addition, the interaction between P2 and rice ent-kaurene oxidase-like proteins may decrease phytoalexin biosynthesis and make plants more competent for virus replication. Moreover, P2 may provide a novel tool to investigate the regulation of GA metabolism for plant growth and development. PMID:16299167

  2. Evolving ideas about genetics underlying insect virulence to plant resistance in rice-brown planthopper interactions.

    Science.gov (United States)

    Kobayashi, Tetsuya

    2016-01-01

    Many plant-parasite interactions that include major plant resistance genes have subsequently been shown to exhibit features of gene-for-gene interactions between plant Resistance genes and parasite Avirulence genes. The brown planthopper (BPH) Nilaparvata lugens is an important pest of rice (Oryza sativa). Historically, major Resistance genes have played an important role in agriculture. As is common in gene-for-gene interactions, evolution of BPH virulence compromises the effectiveness of singly-deployed resistance genes. It is therefore surprising that laboratory studies of BPH have supported the conclusion that virulence is conferred by changes in many genes rather than a change in a single gene, as is proposed by the gene-for-gene model. Here we review the behaviour, physiology and genetics of the BPH in the context of host plant resistance. A problem for genetic understanding has been the use of various insect populations that differ in frequencies of virulent genotypes. We show that the previously proposed polygenic inheritance of BPH virulence can be explained by the heterogeneity of parental populations. Genetic mapping of Avirulence genes indicates that virulence is a monogenic trait. These evolving concepts, which have brought the gene-for-gene model back into the picture, are accelerating our understanding of rice-BPH interactions at the molecular level. Copyright © 2015 Elsevier Ltd. All rights reserved.

  3. Growth, Metabolism and Yield of Rice Cultivated in Soils Amended with Fly Ash and Cyanobacteria and Metal Loads in Plant Parts

    Directory of Open Access Journals (Sweden)

    Rabindra N. Padhy

    2016-01-01

    Full Text Available Soil amendment with fly ash (FA and combined supplementation with N2-fixing cyanobacteria masses as biofertilizer were done in field experiments with rice. Amendments with FA levels, 0, 0.5, 1.0, 2.0, 4.0, 8.0 and 10.0 kg/m2, caused increase in growth and yield of rice up to 8.0 kg/m2, monitored with several parameters. Pigment contents and enzyme activities of leaves were enhanced by FA, with the maximum level of FA at 10.0 kg/m2. Protein content of rice seeds was the highest in plants grown at FA level 4.0 kg/m2. Basic soil properties, pH value, percentage of silt, percentage of clay, water-holding capacity, electrical conductivity, cation exchange capacity, and organic carbon content increased due to the FA amendment. Parallel supplementation of FA amended plots with 1.0 kg/m2 N2-fixing cyanobacteria mass caused further significant increments of the most soil properties, and rice growth and yield parameters. 1000-grain weight of rice plants grown at FA level 4.0 kg/m2 along with cyanobacteria supplementation was the maximum. Cyanobacteria supplementation caused increase of important basic properties of soil including the total N-content. Estimations of elemental content in soils and plant parts (root and seed were done by the atomic absorption spectrophotometry. Accumulations of K, P, Fe and several plant micronutrients (Mn, Ni, Co, Zn and Cu and toxic elements (Pb, Cr and Cd increased in soils and plant parts as a function of the FA gradation, but Na content remained almost unchanged in soils and seeds. Supplementation of cyanobacteria had ameliorating effect on toxic metal contents of soils and plant parts. The FA level 4.0 kg/m2, with 1.0 kg/m2 cyanobacteria mass supplementation, could be taken ideal, since there would be recharging of the soil with essential micronutrients as well as toxic chemicals in comparative lesser proportions, and cyanobacteria mass would cause lessening toxic metal loads with usual N2-fixation.

  4. Magnesium-induced alterations in the photosynthetic performance and resistance of rice plants infected with Bipolaris oryzae

    Directory of Open Access Journals (Sweden)

    Wiler Ribas Moreira

    2015-08-01

    Full Text Available Brown spot (BS, caused by the fungus Bipolaris oryzae, is one of the most important diseases contracted by rice. We investigated the effect of magnesium (Mg on the development of BS, caused by Bipolaris oryzae, and the effects of disease development on the photosynthetic performance of rice (Oryza sativa L. plants (cv. Metica-1 grown in nutrient solutions containing 0.25 or 4.0 mM of Mg. Assessments of BS severity, leaf Mg and pigment concentrations (total chlorophylls and carotenoids, were carried out at 120 h after inoculation, in addition to gas exchange parameters,. Higher leaf concentration of Mg was observed in plants supplied with 4.0 mM Mg than in those supplied with 0.25 mM. The increase in leaf Mg was accompanied by a decrease in BS severity, higher concentration of total chlorophyll and better photosynthetic performance. Plants supplied with 4.0 mM Mg had higher average values for carbon assimilation, stomatal conductance and internal leaf CO2 concentration when compared with plants supplied with 0.25 mM Mg. Conversely, the concentration of carotenoids was lower in plants supplied with the higher Mg rate. These results suggest that Mg suppresses disease severity and preserves photosynthetic performance by allowing for better stomatal conductance and, consequently, greater availability of CO2 at the carboxylation sites.

  5. Combined influence of Bt rice and rice dwarf virus on biological parameters of a non-target herbivore, Nephotettix cincticeps (Uhler) (Hemiptera: Cicadellidae).

    Science.gov (United States)

    Wang, Qianjin; Han, Naishun; Dang, Cong; Lu, Zengbin; Wang, Fang; Yao, Hongwei; Peng, Yufa; Stanley, David; Ye, Gongyin

    2017-01-01

    The advent of genetically modified (GM) Bt rice creates the possibility of interactions among Bt crops, crop pathogens and non-target herbivores. In particular, information on how pathogen-infected Bt-expressing plants will influence non-target herbivores is necessary to predict the sustainability of GM cropping systems. Laboratory bioassays were conducted to evaluate the potential combined impacts of rice dwarf virus (RDV) and two Bt rice lines, T1C-19 (Cry1C) and T2A-1 (Cry2A), on non-target green rice leafhopper (GRLH), Nephotettix cincticeps (Uhler) (Hemiptera: Cicadellidae). In the first experiment, GRLHs feeding preference tests on Bt rice lines compared to a parental control rice line, MH63, were conducted. As rice plants were uninfected with RDV, GRLHs generally preferred the control MH63 line over the two Bt lines during the initial 8 h, with no significant preference during the following 64 h. As rice plants were infected with RDV, there were no clear preferences between the Bt rice lines and the control MH63 line. In the second experiment, we assessed the combined influence of RDV-infection status and Bt rice lines on GRLH biological parameters. Egg duration, adult weights, and male adult longevity were significantly affected on RDV-infected Bt rice. Other parameters, egg hatching rate, nymph survival and fecundity were not significantly influenced. We infer that interaction effect among two testing Bt rice lines and RDV will not lead to enlarged pest populations, thus demonstrating that growing these two Bt rice lines will poses negligible risk to GRLH in sustainable rice agroecosystems. Long-term field experiments to monitor the population dynamics of GRLHs at large scale need to be carried out to confirm the current results.

  6. Combined influence of Bt rice and rice dwarf virus on biological parameters of a non-target herbivore, Nephotettix cincticeps (Uhler (Hemiptera: Cicadellidae.

    Directory of Open Access Journals (Sweden)

    Qianjin Wang

    Full Text Available The advent of genetically modified (GM Bt rice creates the possibility of interactions among Bt crops, crop pathogens and non-target herbivores. In particular, information on how pathogen-infected Bt-expressing plants will influence non-target herbivores is necessary to predict the sustainability of GM cropping systems. Laboratory bioassays were conducted to evaluate the potential combined impacts of rice dwarf virus (RDV and two Bt rice lines, T1C-19 (Cry1C and T2A-1 (Cry2A, on non-target green rice leafhopper (GRLH, Nephotettix cincticeps (Uhler (Hemiptera: Cicadellidae. In the first experiment, GRLHs feeding preference tests on Bt rice lines compared to a parental control rice line, MH63, were conducted. As rice plants were uninfected with RDV, GRLHs generally preferred the control MH63 line over the two Bt lines during the initial 8 h, with no significant preference during the following 64 h. As rice plants were infected with RDV, there were no clear preferences between the Bt rice lines and the control MH63 line. In the second experiment, we assessed the combined influence of RDV-infection status and Bt rice lines on GRLH biological parameters. Egg duration, adult weights, and male adult longevity were significantly affected on RDV-infected Bt rice. Other parameters, egg hatching rate, nymph survival and fecundity were not significantly influenced. We infer that interaction effect among two testing Bt rice lines and RDV will not lead to enlarged pest populations, thus demonstrating that growing these two Bt rice lines will poses negligible risk to GRLH in sustainable rice agroecosystems. Long-term field experiments to monitor the population dynamics of GRLHs at large scale need to be carried out to confirm the current results.

  7. Gene response in rice plants treated with continuous fog influenced by pH, was similar to that treated with biotic stress.

    Science.gov (United States)

    Satoh, Kouji; Saji, Shoko; Ito, Shoko; Shimizu, Hideyuki; Saji, Hikaru; Kikuchi, Shoshi

    2014-01-01

    Throughout Asia, including Japan, rice plants are cultivated in a wide range of areas from lowlands to highlands and are frequently exposed to fog, including acid fog. Some physiological studies have shown that acid fog can be a stress factor for plants. We analyzed the gene expression profiles of rice plants treated with artificially prepared simulated acid fog (SiAF) or simulated neutral fog (SiNF) for 1 or 7 days. Microarray analysis results suggested that both the SiAF and the SiNF treatments induced the expression of genes involved in the defense and stress responses in rice plants. Induction of such genes was detected in plants treated with SiAF for 1 day, and the number of induced genes increased in plants treated with SiAF for 7 days. The genes for defense and stress responses were also induced by SiNF for 7 days, although they were not induced by SiNF for 1 day. The gene expression profiles of the SiAF-treated and the SiNF-treated plants were compared to those of plants treated with other stress factors. The comparison revealed that both SiAF and SiNF treatments have similar effects to biotic stresses and ozone stress. The genes encoding NADPH oxidase and germin, which function in apoplasts, were also induced by SiAF, SiNF and biotic stresses. These findings suggest that both the SiAF and the SiNF treatments may result in oxidative stress through the apoplastic production of reactive oxygen species.

  8. Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice

    Directory of Open Access Journals (Sweden)

    Yunhua Xiao

    2017-09-01

    Full Text Available Brassinosteroids (BRs regulate important agronomic traits in rice, including plant height, leaf angle, and grain size. However, the underlying mechanisms remain not fully understood. We previously showed that GSK2, the central negative regulator of BR signaling, targets DLT, the GRAS family protein, to regulate BR responses. Here, we identified Ovate Family Protein 1 (OFP1 as a DLT interacting protein. OFP1 was ubiquitously expressed and the protein was localized in both cytoplasm and nucleus. Overexpression of OFP1 led to enlarged leaf angles, reduced plant height, and altered grain shape, largely resembled DLT overexpression plants. Genetic analysis showed that the regulation of plant architecture by OFP1 depends on DLT function. In addition, we found OFP1 was greatly induced by BR treatment, and OsBZR1, the critical transcription factor of BR signaling, was physically associated with the OFP1 promoter. Moreover, we showed that gibberellin synthesis was greatly repressed in OFP1 overexpression plants, suggesting OFP1 participates in the inhibition of plant growth by high BR or elevated BR signaling. Furthermore, we revealed that OFP1 directly interacts with GSK2 kinase, and inhibition of the kinase activity significantly promotes OFP1 protein accumulation in plant. Taken together, we identified OFP1 as an additional regulator of BR responses and revealed how BRs promote OFP1 at both transcription and protein levels to modulate plant architecture and grain morphology in rice.

  9. Contribution of rice straw carbon to CH4 emission from rice paddies using 13C-enriched rice straw

    Science.gov (United States)

    Watanabe, Akira; Yoshida, Mariko; Kimura, Makoto

    1998-04-01

    It is generally recognized that the application of rice straw (RS) increases CH4 emission from rice paddies. To estimate the contribution of RS carbon to CH4 emission, a pot experiment was conducted using 13C-enriched RS. The percentage contributions of RS carbon to CH4 emission throughout the rice growth period were 10±1, 32±3, and 43±3% for the treatments with RS applied at the rates of 2, 4, and 6 g kg-1 soil, respectively. The increase in the rate of application of RS increased CH4 emission derived from both RS carbon and other carbon sources. The percentage contribution of RS carbon to CH4 emission was larger in the earlier period (maximum 96%) when the decomposition rate of RS was larger. After RS decomposition had slowed, CH4 emission derived from RS carbon decreased. However, the δ13C values of CH4 emitted from the pots with 13C-enriched RS applied at rates of 4 and 6 g kg-1 soil were significantly higher than those from the pots with natural RS until the harvesting stage. An increased atom-13C% of roots of rice plants growing in the pots with 6 g kg-1 of 13C-enriched RS at around the maximum tiller number stage and a decrease during the following 2 months suggested that rice plants assimilated RS carbon once and then released a portion of it. This supply of RS carbon from roots may be one of the sources of CH4 in the late period of rice growth.

  10. Autophagy Supports Biomass Production and Nitrogen Use Efficiency at the Vegetative Stage in Rice1[OPEN

    Science.gov (United States)

    Hayashida, Yasukazu; Kurusu, Takamitsu; Kojima, Soichi; Makino, Amane

    2015-01-01

    Much of the nitrogen in leaves is distributed to chloroplasts, mainly in photosynthetic proteins. During leaf senescence, chloroplastic proteins, including Rubisco, are rapidly degraded, and the released nitrogen is remobilized and reused in newly developing tissues. Autophagy facilitates the degradation of intracellular components for nutrient recycling in all eukaryotes, and recent studies have revealed critical roles for autophagy in Rubisco degradation and nitrogen remobilization into seeds in Arabidopsis (Arabidopsis thaliana). Here, we examined the function of autophagy in vegetative growth and nitrogen usage in a cereal plant, rice (Oryza sativa). An autophagy-disrupted rice mutant, Osatg7-1, showed reduced biomass production and nitrogen use efficiency compared with the wild type. While Osatg7-1 showed early visible leaf senescence, the nitrogen concentration remained high in the senescent leaves. 15N pulse chase analysis revealed suppression of nitrogen remobilization during leaf senescence in Osatg7-1. Accordingly, the reduction of nitrogen available for newly developing tissues in Osatg7-1 likely led its reduced leaf area and tillers. The limited leaf growth in Osatg7-1 decreased the photosynthetic capacity of the plant. Much of the nitrogen remaining in senescent leaves of Osatg7-1 was in soluble proteins, and the Rubisco concentration in senescing leaves of Osatg7-1 was about 2.5 times higher than in the wild type. Transmission electron micrographs showed a cytosolic fraction rich with organelles in senescent leaves of Osatg7-1. Our results suggest that autophagy contributes to efficient nitrogen remobilization at the whole-plant level by facilitating protein degradation for nitrogen recycling in senescent leaves. PMID:25786829

  11. Study on allelopathic effects of Rice and Wheat Soil-Like Substrate on several plants

    Science.gov (United States)

    Li, Leyuan; Fu, Wenting; He, Wenting; Liu, Hong

    Rice and wheat are the traditional food of Chinese people, and therefore the main crop candidates for bio-regenerative life-support systems. Recycling rice and wheat straw is an important issue concerning the system. In order to decide if the mixed-substrate made of rice and wheat straw is suitable of plant cultivation, Rice and Wheat Soil-Like Substrate was tested in an aqueous extract germination experiment. The effects of different concentrations of aqueous extract on seed vigor, seedling growth and development situations and the physiological and biochemical characteristics of wheat, lettuce and pumpkin were studied, and the presence and degrees of allelopathic effects were analyzed. The test results showed that this type of SLS exerted different degrees of allelopathic effect on wheat and lettuce; this allelopathic effect was related to the concentration of SLS aqueous extract. The most significant phenomenon is that with the increase of aqueous extract concentration, the seed germination, root length and shoot fresh weight of wheat decreased; and every concentration of aqueous extract showed significant inhibition on the root length and root fresh weight of lettuce. However, this type of SLS showed little effect on the growth of pumpkin seedlings. Contents changes of chlorophyll and endogenous hormones in wheat and lettuce seedlings, and the chemical compositions of SLS were measured, and the mechanism of allelopathic effect was preliminarily analyzed.

  12. Gene expression and plant hormone levels in two contrasting rice genotypes responding to brown planthopper infestation.

    Science.gov (United States)

    Li, Changyan; Luo, Chao; Zhou, Zaihui; Wang, Rui; Ling, Fei; Xiao, Langtao; Lin, Yongjun; Chen, Hao

    2017-02-28

    The brown planthopper (BPH; Nilaparvata lugens Stål) is a destructive piercing-sucking insect pest of rice. The plant hormones salicylic acid (SA) and jasmonic acid (JA) play important roles in plant-pest interactions. Many isolated rice genes that modulate BPH resistance are involved in the metabolism or signaling pathways of SA, JA and ethylene. 'Rathu Heenati' (RH) is a rice cultivar with a high-level, broad-spectrum resistance to all BPH biotypes. Here, RH was used as the research material, while a BPH-susceptible rice cultivar 'Taichung Native 1' (TN1) was the control. A cDNA microarray analysis illuminated the resistance response at the genome level of RH under BPH infestation. The levels of SA and JA in RH and TN1 seedlings after BPH infestation were also determined. The expression pattern clustering indicated that 1467 differential probe sets may be associated with constitutive resistance and 67 with the BPH infestation-responsive resistance of RH. A Venn diagram analysis revealed 192 RH-specific and BPH-inducible probe sets. Finally, 23 BPH resistance-related gene candidates were selected based on the expression pattern clustering and Venn diagram analysis. In RH, the SA content significantly increased and the JA content significantly decreased after BPH infestation, with the former occurring prior to the latter. In RH, the differential genes in the SA pathway were synthesis-related and were up-regulated after BPH infestation. The differential genes in the JA pathway were also up-regulated. They were jasmonate ZIM-domain transcription factors, which are important negative regulators of the JA pathway. Comparatively, genes involved in the ET pathway were less affected by a BPH infestation in RH. DNA sequence analysis revealed that most BPH infestation-inducible genes may be regulated by the genetic background in a trans-acting manner, instead of by their promoters. We profiled the analysis of the global gene expression in RH and TN1 under BPH infestation

  13. Genotypic and environmental variation in cadmium, chromium, lead and copper in rice and approaches for reducing the accumulation

    Energy Technology Data Exchange (ETDEWEB)

    Cao, Fangbin; Wang, Runfeng [Institute of Crop Science, Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058 (China); Cheng, Wangda [Jiaxing Academy of Agricultural Sciences, Jiaxing 314016 (China); Zeng, Fanrong; Ahmed, Imrul Mosaddek; Hu, Xinna; Zhang, Guoping [Institute of Crop Science, Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058 (China); Wu, Feibo, E-mail: wufeibo@zju.edu.cn [Institute of Crop Science, Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058 (China)

    2014-10-15

    The field scale trials revealed significant genotypic and environmental differences in grain heavy metal (HM) concentrations of 158 newly developed rice varieties grown in twelve locations of Zhejiang province of China. Grain Pb and Cd contents in 5.3% and 0.4% samples, respectively, were above the maximum permissible concentration (MPC); none of samples had Cr/Cu exceeding MPC. Stepwise multiple linear regression analysis estimated soil HM critical levels for safe rice production. Low grain HM accumulation cultivars such as Xiushui817, Jiayou08-1 and Chunyou689 were recommended as suitable cultivars for planting in slight/medium HM contaminated soils. The alleviating regulator (AR) of (NH{sub 4}){sub 2}SO{sub 4} as N fertilizer coupled with foliar spray of a mixture containing glutathione (GSH), Si, Zn and Se significantly decreased grain Cd, Cr, Cu and Pb concentrations grown in HM contaminated fields with no effect on yield, indicating a promising measurement for further reducing grain HM content to guarantee safe food production. - Highlights: • Field trials evaluated situation of grain HM in main rice growing areas of Zhejiang. • Forecasting index system to predict rice grain HM concentration was achieved. • Hybrid rice holds higher grain Cd concentration than conventional cultivars. • Low grain HM accumulation rice cultivars were successfully identified. • Developed alleviating regulator which effectively reduced grain toxic HM.

  14. Genotypic and environmental variation in cadmium, chromium, lead and copper in rice and approaches for reducing the accumulation

    International Nuclear Information System (INIS)

    Cao, Fangbin; Wang, Runfeng; Cheng, Wangda; Zeng, Fanrong; Ahmed, Imrul Mosaddek; Hu, Xinna; Zhang, Guoping; Wu, Feibo

    2014-01-01

    The field scale trials revealed significant genotypic and environmental differences in grain heavy metal (HM) concentrations of 158 newly developed rice varieties grown in twelve locations of Zhejiang province of China. Grain Pb and Cd contents in 5.3% and 0.4% samples, respectively, were above the maximum permissible concentration (MPC); none of samples had Cr/Cu exceeding MPC. Stepwise multiple linear regression analysis estimated soil HM critical levels for safe rice production. Low grain HM accumulation cultivars such as Xiushui817, Jiayou08-1 and Chunyou689 were recommended as suitable cultivars for planting in slight/medium HM contaminated soils. The alleviating regulator (AR) of (NH 4 ) 2 SO 4 as N fertilizer coupled with foliar spray of a mixture containing glutathione (GSH), Si, Zn and Se significantly decreased grain Cd, Cr, Cu and Pb concentrations grown in HM contaminated fields with no effect on yield, indicating a promising measurement for further reducing grain HM content to guarantee safe food production. - Highlights: • Field trials evaluated situation of grain HM in main rice growing areas of Zhejiang. • Forecasting index system to predict rice grain HM concentration was achieved. • Hybrid rice holds higher grain Cd concentration than conventional cultivars. • Low grain HM accumulation rice cultivars were successfully identified. • Developed alleviating regulator which effectively reduced grain toxic HM

  15. Improving the phenotypic expression of rice genotypes: Rethinking “intensification” for production systems and selection practices for rice breeding

    Directory of Open Access Journals (Sweden)

    Norman Uphoff

    2015-06-01

    Full Text Available Intensification in rice crop production is generally understood as requiring increased use of material inputs: water, inorganic fertilizers, and agrochemicals. However, this is not the only kind of intensification available. More productive crop phenotypes, with traits such as more resistance to biotic and abiotic stresses and shorter crop cycles, are possible through modifications in the management of rice plants, soil, water, and nutrients, reducing rather than increasing material inputs. Greater factor productivity can be achieved through the application of new knowledge and more skill, and (initially more labor, as seen from the System of Rice Intensification (SRI, whose practices are used in various combinations by as many as 10 million farmers on about 4 million hectares in over 50 countries. The highest yields achieved with these management methods have come from hybrids and improved rice varieties, confirming the importance of making genetic improvements. However, unimproved varieties are also responsive to these changes, which induce better growth and functioning of rice root systems and more abundance, diversity, and activity of beneficial soil organisms. Some of these organisms as symbiotic endophytes can affect and enhance the expression of rice plants' genetic potential as well as their phenotypic resilience to multiple stresses, including those of climate change. SRI experience and data suggest that decades of plant breeding have been selecting for the best crop genetic endowments under suboptimal growing conditions, with crowding of plants that impedes their photosynthesis and growth, flooding of rice paddies that causes roots to degenerate and forgoes benefits derived from aerobic soil organisms, and overuse of agrochemicals that adversely affect these organisms as well as soil and human health. This review paper reports evidence from research in India and Indonesia that changes in crop and water management can improve the

  16. Rice Cluster I, an Important Group of Archaea Producing Methane in Rice Fields

    Science.gov (United States)

    Conrad, R.

    2006-12-01

    Rice fields are an important source for the greenhouse gas methane. Methane is a major degradation product of organic matter in the anoxic soil, is partially oxidized in the rhizosphere and is emitted into the atmosphere through the aerenchyma system of the plants. Anaerobic degradation of organic matter by fermenting bacteria eventually results in the production of acetate and hydrogen, the two major substrates for microbial methanogenesis. The community of methanogenic archaea consists of several major orders or families including hydrogen-utilizing Rice Cluster-I (RC-I). Environmental conditions affect the methanogenic degradation process and the community structure of the methanogenic archaea in soil and rhizosphere. For example, populations of acetoclastic Methanosaetaceae and Methanosarcinaceae are enhanced by low and high acetate concentrations, respectively. Stable isotope probing of 16S rRNA showed that RC-I methanogens are mainly active on rice roots and at low H2 concentrations. Growth and population size is largely consistent with energetic conditions. RC-I methanogens on roots seem to be responsible for methane production from plant photosynthates that account for a major part of the emitted methane. Populations of RC-I methanogens in rice field soil are also enhanced at elevated temperatures (40-50°C). Moderately thermophilic members of RC-I methanogens or other methanogenic families were found to be ubiquitously present in soils from rice fields and river marshes. The genome of a RC-I methanogen was completely sequenced out of an enrichment culture using a metagenome approach. Genes found are consistent with life in the rhizosphere and in temporarily drained, oxic soil. We found that the methanogenic community structure on the rice roots is mainly determined by the respective community structure of the soil, but is in addition affected by the rice cultivar. Rice microcosms in which soil and rice roots are mainly colonized by RC-I methanogens produce

  17. JcDREB2, a Physic Nut AP2/ERF Gene, Alters Plant Growth and Salinity Stress Responses in Transgenic Rice.

    Science.gov (United States)

    Tang, Yuehui; Liu, Kun; Zhang, Ju; Li, Xiaoli; Xu, Kedong; Zhang, Yi; Qi, Jing; Yu, Deshui; Wang, Jian; Li, Chengwei

    2017-01-01

    Transcription factors of the AP2/ERF family play important roles in plant growth, development, and responses to biotic and abiotic stresses. In this study, a physic nut AP2/ERF gene, JcDREB2 , was functionally characterized. Real-time PCR analysis revealed that JcDREB2 was expressed mainly in the leaf and could be induced by abscisic acid but suppressed by gibberellin (GA) and salt. Transient expression of a JcDREB2-YFP fusion protein in Arabidopsis protoplasts cells suggested that JcDREB2 is localized in the nucleus. Rice plants overexpressing JcDREB2 exhibited dwarf and GA-deficient phenotypes with shorter shoots and roots than those of wild-type plants. The dwarfism phenotype could be rescued by the application of exogenous GA 3 . The expression levels of GA biosynthetic genes including OsGA20ox1 , OsGA20ox2 , OsGA20ox4 , OsGA3ox2, OsCPS1 , OsKO2 , and OsKAO were significantly reduced in plants overexpressing JcDREB2 . Overexpression of JcDREB2 in rice increased sensitivity to salt stress. Increases in the expression levels of several salt-tolerance-related genes in response to salt stress were impaired in JcDREB2 -overexpressing plants. These results demonstrated not only that JcDREB2 influences GA metabolism, but also that it can participate in the regulation of the salt stress response in rice.

  18. Transfer of technetium from soil to paddy and upland rice

    International Nuclear Information System (INIS)

    Yanagisawa, Kei; Muramatsu, Yasuyuki

    1995-01-01

    Soil-plant transfer factors (concentration ratio between the plant and soil) of technetium in paddy and upland rice plants were obtained from laboratory experiments. The transfer factor is one of the most important parameters for environmental radiation dose assessment. Technetium tracer ( 95m TcO 4 - ) was added to the soil prior to rice cultivation. The transfer factor of technetium for the hulled grains (brown rice) of paddy rice (≤0.0002) was much lower than for that of upland rice (0.021). The transfer factors for both types of hulled grains were much lower than in the leaves. The technetium decontamination rate from hulled grains by polishing was 34%, the percentage of the weight decrease being 12%. The concentration of technetium in the soil solution collected from the paddy rice soil (flooded conditions) decreased rapidly with time due to its adsorption on the soil. In the upland rice soil (non-flooded) solution, the decrease in the technetium concentration was fairly slow. The low transfer factors for the paddy rice plants could be explained by the immobilization of technetium in the flooded soil. The oxidation-reduction potentials (Eh) in the flooded soil decreased rapidly with time. We conclude that technetium tracer added as TcO 4 - to flooded soil is readily transformed to an insoluble form (e.g.TcO 2 ) under the reducing conditions provided by flooding. (author)

  19. Introgression of Blast Resistance Genes (Putative Pi-b and Pi-kh) into Elite Rice Cultivar MR219 through Marker-Assisted Selection

    Science.gov (United States)

    Tanweer, Fatah A.; Rafii, Mohd Y.; Sijam, Kamaruzaman; Rahim, Harun A.; Ahmed, Fahim; Ashkani, Sadegh; Latif, Mohammad A.

    2015-01-01

    Blast is the most common biotic stress leading to the reduction of rice yield in many rice-growing areas of the world, including Malaysia. Improvement of blast resistance of rice varieties cultivated in blast endemic areas is one of the most important objectives of rice breeding programs. In this study, the marker-assisted backcrossing strategy was applied to improve the blast resistance of the most popular Malaysian rice variety MR219 by introgressing blast resistance genes from the Pongsu Seribu 2 variety. Two blast resistance genes, Pi-b and Pi-kh, were pyramided into MR219. Foreground selection coupled with stringent phenotypic selection identified 15 plants homozygous for the Pi-b and Pi-kh genes, and background selection revealed more than 95% genome recovery of MR219 in advanced blast resistant lines. Phenotypic screening against blast disease indicated that advanced homozygous blast resistant lines were strongly resistant against pathotype P7.2 in the blast disease endemic areas. The morphological, yield, grain quality, and yield-contributing characteristics were significantly similar to those of MR219. The newly developed blast resistant improved lines will retain the high adoptability of MR219 by farmers. The present results will also play an important role in sustaining the rice production of Malaysia. PMID:26734013

  20. Transfer pathways of {sup 54}Mn, {sup 57}Co, {sup 85}Sr, {sup 103}Ru and {sup 134}Cs in rice and radish plants directly contaminated at different growth stages

    Energy Technology Data Exchange (ETDEWEB)

    Choi, Y.H. E-mail: yhchoi1@kaeri.re.kr; Lim, K.M.; Yu, D.; Park, H.G.; Choi, Y.G.; Lee, C.M

    2002-03-01

    In order to study radionuclide transfer pathways related to direct contamination of plants, the above-ground parts of rice and radish plants were sprayed with a solution containing {sup 54}Mn, {sup 57}Co, {sup 85}Sr, {sup 103}Ru and {sup 134}Cs in a greenhouse at 5 or 6 different times. Showing little difference among radionuclides, the interception factor increased as plants grew to maturity. Its highest observed value was 0.94 in rice and 0.83 in radish. Weathering losses of the intercepted activity by harvest were 32-89% in rice and 32-85% in radish depending on application time and radionuclide. Half lives for weathering loss were estimated to be longer on the whole for earlier applications. The translocation factor varied with application time by factors of 6-110 for hulled rice seeds and 2-23 for radish roots depending on the radionuclide. It varied with radionuclides by factors of 6-800 depending on application time and plant species. It was highest in the plants sprayed during active seed growth for rice and during early plant growth for radish. In general, {sup 134}Cs and {sup 57}Co had the highest translocation factors followed by {sup 54}Mn, {sup 85}Sr and {sup 103}Ru. Based on the experimental results, radionuclide concentrations in the edible parts of mature plants were predicted for unit deposition.

  1. Separation of allelopathy from resource competition using rice/barnyardgrass mixed-cultures.

    Directory of Open Access Journals (Sweden)

    Hai Bin He

    Full Text Available Plant-plant interference is the combined effect of allelopathy, resource competition, and many other factors. Separating allelopathy from resource competition is almost impossible in natural systems but it is important to evaluate the relative contribution of each of the two mechanisms on plant interference. Research on allelopathy in natural and cultivated plant communities has been hindered in the absence of a reliable method that can separate allelopathic effect from resource competition. In this paper, the interactions between allelopathic rice accession PI312777, non-allelopathic rice accession Lemont and barnyardgrass were explored respectively by using a target (rice-neighbor (barnyardgrass mixed-culture in hydroponic system. The relative competitive intensity (RCI, the relative neighbor effect (RNE and the competitive ratio (CR were used to quantify the intensity of competition between each of the two different potentially allelopathic rice accessions and barnyardgrass. Use of hydroponic culture system enabled us to exclude any uncontrolled factors that might operate in the soil and we were able to separate allelopathy from resource competition between each rice accession and barnyardgrass. The RCI and RNE values showed that the plant-plant interaction was positive (facilitation for PI312777 but that was negative (competition for Lemont and barnyardgrass in rice/barnyardgrass mixed-cultures. The CR values showed that one PI312777 plant was more competitive than 2 barnyardgrass plants. The allelopathic effects of PI312777 were much more intense than the resource competition in rice/barnyardgrass mixed cultures. The reverse was true for Lemont. These results demonstrate that the allelopathic effect of PI312777 was predominant in rice/barnyardgrass mixed-cultures. The most significant result of our study is the discovery of an experimental design, target-neighbor mixed-culture in combination with competition indices, can successfully

  2. Diseases of wild rice

    Science.gov (United States)

    Diseases are much more pronounced in cultivated wild rice than in natural stands, most likely due to the narrower genetic base of the populations, plant stress due to high planting density and floodwater removal prior to harvest, and high relative humidity in the plant canopy. Yield losses occur as ...

  3. Whole-plant growth and N utilization in transgenic rice plants with increased or decreased Rubisco content under different CO2 partial pressures.

    Science.gov (United States)

    Sudo, Emi; Suzuki, Yuji; Makino, Amane

    2014-11-01

    Ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) strongly limits photosynthesis at lower CO2 concentration [CO2] whereas [corrected] Rubisco limitation is cancelled by elevated [CO2]. Therefore, increase or reduction in Rubisco content by transformation with a sense or an antisense RBCS construct are expected to alter the biomass production under different CO2 levels. RBCS-sense (125% Rubisco of wild-type) and -antisense (35% Rubisco of wild-type) rice (Oryza sativa L.) plants were grown for 63 days at three different CO2 levels: low [CO2] (28 Pa), normal [CO2] (40 Pa) and elevated [CO2] (120 Pa). The biomass of RBCS-sense plants was 32% and 15% greater at low [CO2] and normal [CO2] than that of the wild-type plants, respectively, but did not differ at elevated [CO2]. Conversely, the biomass of RBCS-antisense plants was the smallest at low [CO2]. Thus, overproduction of Rubisco was effective for biomass production at low [CO2]. Greater biomass production at low [CO2] in RBCS-sense plants was caused by an increase in the net assimilation rate, and associated with an increase in the amount of N uptake. Furthermore, Rubisco overproduction in RBCS-sense plants was also promoted at low [CO2]. Although it seems that low [CO2]-growth additionally stimulates the effect of RBCS overexpression, such a phenomenon observed at low [CO2] was mediated through an increase in total leaf N content. Thus, the dependence of the growth improvement in RBCS-sense rice on growth [CO2] was closely related to the degree of Rubisco overproduction which was accompanied not only by leaf N content but also by whole plant N content. © The Author 2014. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

  4. Biochar amendment reduced methylmercury accumulation in rice plants.

    Science.gov (United States)

    Shu, Rui; Wang, Yongjie; Zhong, Huan

    2016-08-05

    There is growing concern about methylmercury (MeHg) accumulation in rice grains and thus enhanced dietary exposure to MeHg in Asian countries. Here, we explored the possibility of reducing grain MeHg levels by biochar amendment, and the underlying mechanisms. Pot (i.e., rice cultivation in biochar amended soils) and batch experiments (i.e., incubation of amended soils under laboratory conditions) were carried out, to investigate MeHg dynamics (i.e., MeHg production, partitioning and phytoavailability in paddy soils, and MeHg uptake by rice) under biochar amendment (1-4% of soil mass). We demonstrate for the first time that biochar amendment could evidently reduce grain MeHg levels (49-92%). The declines could be attributed to the combined effects of: (1) increased soil MeHg concentrations, probably explained by the release of sulfate from biochar and thus enhanced microbial production of MeHg (e.g., by sulfate-reducing bacteria), (2) MeHg immobilization in soils, facilitated by the large surface areas and high organosulfur content of biochar, and (3) biodilution of MeHg in rice grains, due to the increased grain biomass under biochar amendment (35-79%). These observations together with mechanistic explanations improve understanding of MeHg dynamics in soil-rice systems, and support the possibility of reducing MeHg phytoaccumulation under biochar amendment. Copyright © 2016 Elsevier B.V. All rights reserved.

  5. Contrasting effects of ethylene biosynthesis on induced plant resistance against a chewing and a piercing-sucking herbivore in rice.

    Science.gov (United States)

    Lu, Jing; Li, Jiancai; Ju, Hongping; Liu, Xiaoli; Erb, Matthias; Wang, Xia; Lou, Yonggen

    2014-11-01

    Ethylene is a stress hormone with contrasting effects on herbivore resistance. However, it remains unknown whether these differences are plant- or herbivore-specific. We cloned a rice 1-aminocyclopropane-1-carboxylic acid (ACC) synthase gene, OsACS2, whose transcripts were rapidly up-regulated in response to mechanical wounding and infestation by two important pests: the striped stem borer (SSB) Chilo suppressalis and the brown planthopper (BPH) Nilaparvata lugens. Antisense expression of OsACS2 (as-acs) reduced elicited ethylene emission, SSB-elicited trypsin protease inhibitor (TrypPI) activity, SSB-induced volatile release, and SSB resistance. Exogenous application of ACC restored TrypPI activity and SSB resistance. In contrast to SSB, BPH infestation increased volatile emission in as-acs lines. Accordingly, BPH preferred to feed and oviposit on wild-type (WT) plants--an effect that could be attributed to two repellent volatiles, 2-heptanone and 2-heptanol, that were emitted in higher amounts by as-acs plants. BPH honeydew excretion was reduced and natural enemy attraction was enhanced in as-acs lines, resulting in higher overall resistance to BPH. These results demonstrate that ethylene signaling has contrasting, herbivore-specific effects on rice defense responses and resistance against a chewing and a piercing-sucking insect, and may mediate resistance trade-offs between herbivores of different feeding guilds in rice. © The Author 2014. Published by the Molecular Plant Shanghai Editorial Office in association with Oxford University Press on behalf of CSPB and IPPE, SIBS, CAS.

  6. Ammonia volatilization from a paddy field following applications of urea: rice plants are both an absorber and an emitter for atmospheric ammonia.

    Science.gov (United States)

    Hayashi, Kentaro; Nishimura, Seiichi; Yagi, Kazuyuki

    2008-02-15

    Ammonia (NH(3)) volatilization from a paddy field following applications of urea was measured. Two lysimeters of Gray Lowland soil with a pH (H(2)O) of 5.7 were used for the experiment. Urea was applied at a rate of 50 kg N ha(-1) by incorporation as the basal fertilization (BF) and at rates of 30 and 10 kg N ha(-1) by top-dressing as the first (SF1) and second (SF2) supplemental fertilizations, respectively. Two wind tunnels per lysimeter were installed just after BF; one was transplanted with rice plants (PR plot), and the other was without rice plants (NR plot). Weak volatilization was observed at the PR plots after BF. By contrast, strong volatilization was observed at the PR plots after SF1 with a maximum flux of 150 g N ha(-1) h(-1); however, almost no volatilization was observed after SF2. The NH(3) volatilization loss accounted for 2.1%, 20.9%, 0.5%, and 8.2% of the applied urea at each application, BF, SF1, SF2, and the total application, respectively, for which only the net fluxes as volatilization were accumulated. The NH(3) volatilization fluxes from the paddy water surface (F(vol)) at the NR plots were estimated using a film model for its verification. After confirmation of good correlation, the film model was applied to estimate F(vol) at the PR plots. The NH(3) exchange fluxes by rice plants (F(ric)) were obtained by subtracting F(vol) from the observed net NH(3) flux. The derived F(ric) showed that the rice plants emitted NH(3) remarkably just after SF1 when a relatively high rate of urea was applied, although they absorbed atmospheric NH(3) in the other periods. In conclusion, rice plants are essentially an absorber of atmospheric NH(3); however, they turn into an emitter of NH(3) under excess nutrition of ammoniacal nitrogen.

  7. Relative availability of crop residue-N in rice cultivation

    International Nuclear Information System (INIS)

    Sirwando, H; Abdullah, N.

    1988-01-01

    The use of plant residues for soil amendment will reduce the use of chemical fertilizers. The experiment to study the uptake of N from various plant residues by rice crop. Three kinds of plant residue of soybean labelled with 15-N. Four levels of urea (0, 15, 30, 40 kg N/ha) were applied to aluvial soil from Pusakanegara. The factorial experiment was conducted in fully randomize design, with plant residues as the main treatment, and rate of urea as substreatment. The results obtained from this experiment showed that plant dry weight, N content of grain, straw, and the whole plant of Atomita I rice treated with soybean strow seens to be higher than those treated with the straw of rice or corn. (author). 6 refs.; 7 tabs

  8. Label-Free Quantitative Proteomic Analysis of Chitosan Oligosaccharide-Treated Rice Infected with Southern Rice Black-Streaked Dwarf Virus.

    Science.gov (United States)

    Yang, Anming; Yu, Lu; Chen, Zhuo; Zhang, Shanxue; Shi, Jing; Zhao, Xiaozhen; Yang, Yuanyou; Hu, Deyu; Song, Baoan

    2017-05-18

    Southern rice black-streaked dwarf virus (SRBSDV) has spread from thesouth of China to the north of Vietnam in the past few years and severelyinfluenced rice production. Its long incubation period and early symptoms are not evident; thus, controlling it is difficult. Chitosan oligosaccharide (COS) is a green plant immunomodulator. Early studies showed that preventing and controlling SRBSDV have a certain effect and reduce disease infection rate, but its underlying controlling and preventing mechanism is unclear. In this study, label-free proteomics was used to analyze differentially expressed proteins in rice after COS treatment. The results showed that COS can up-regulate the plant defense-related proteins and down-regulate the protein expression levels of SRBSDV. Meanwhile, quantitative real-time PCR test results showed that COS can improve defense gene expression in rice. Moreover, COS can enhance the defense enzymatic activities of peroxidase, superoxide dismutase and catalase through mitogen-activated protein kinase signaling cascade pathway, and enhance the rice disease resistance.

  9. Host-Induced Gene Silencing of Rice Blast Fungus Magnaporthe oryzae Pathogenicity Genes Mediated by the Brome Mosaic Virus.

    Science.gov (United States)

    Zhu, Lin; Zhu, Jian; Liu, Zhixue; Wang, Zhengyi; Zhou, Cheng; Wang, Hong

    2017-09-26

    Magnaporthe oryzae is a devastating plant pathogen, which has a detrimental impact on rice production worldwide. Despite its agronomical importance, some newly-emerging pathotypes often overcome race-specific disease resistance rapidly. It is thus desirable to develop a novel strategy for the long-lasting resistance of rice plants to ever-changing fungal pathogens. Brome mosaic virus (BMV)-induced RNA interference (RNAi) has emerged as a useful tool to study host-resistance genes for rice blast protection. Planta-generated silencing of targeted genes inside biotrophic pathogens can be achieved by expression of M. oryzae -derived gene fragments in the BMV-mediated gene silencing system, a technique termed host-induced gene silencing (HIGS). In this study, the effectiveness of BMV-mediated HIGS in M. oryzae was examined by targeting three predicted pathogenicity genes, MoABC1, MoMAC1 and MoPMK1 . Systemic generation of fungal gene-specific small interfering RNA (siRNA) molecules induced by inoculation of BMV viral vectors inhibited disease development and reduced the transcription of targeted fungal genes after subsequent M. oryzae inoculation. Combined introduction of fungal gene sequences in sense and antisense orientation mediated by the BMV silencing vectors significantly enhanced the efficiency of this host-generated trans-specific RNAi, implying that these fungal genes played crucial roles in pathogenicity. Collectively, our results indicated that BMV-HIGS system was a great strategy for protecting host plants against the invasion of pathogenic fungi.

  10. significance of rice sheath photosynthesis: yield determination by c ...

    African Journals Online (AJOL)

    ACSS

    1State Key Laboratory of Hybrid Rice, Hunan Hybrid Rice Research Center, Changsha 410125, P.R. China. 2School of ... for contribution rates of sheath photosynthesis to economical yield. ..... related processes during ripening in rice plants.

  11. Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.

    Directory of Open Access Journals (Sweden)

    Xianbo Liu

    Full Text Available Polycomb group (PcG proteins have been shown to affect growth and development in plants. To further elucidate their role in these processes in rice, we isolated and characterized a rice mutant which exhibits dwarfism, reduced seed setting rate, defective floral organ, and small grains. Map-based cloning revealed that abnormal phenotypes were attributed to a mutation of the Fertilization Independent Endosperm 2 (OsFIE2 protein, which belongs to the PcG protein family. So we named the mutant as osfie2-1. Histological analysis revealed that the number of longitudinal cells in the internodes decreased in osfie2-1, and that lateral cell layer of the internodes was markedly thinner than wild-type. In addition, compared to wild-type, the number of large and small vascular bundles decreased in osfie2-1, as well as cell number and cell size in spikelet hulls. OsFIE2 is expressed in most tissues and the coded protein localizes in both nucleus and cytoplasm. Yeast two-hybrid and bimolecular fluorescence complementation assays demonstrated that OsFIE2 interacts with OsiEZ1 which encodes an enhancer of zeste protein previously identified as a histone methylation enzyme. RNA sequencing-based transcriptome profiling and qRT-PCR analysis revealed that some homeotic genes and genes involved in endosperm starch synthesis, cell division/expansion and hormone synthesis and signaling are differentially expressed between osfie2-1 and wild-type. In addition, the contents of IAA, GA3, ABA, JA and SA in osfie2-1 are significantly different from those in wild-type. Taken together, these results indicate that OsFIE2 plays an important role in the regulation of plant height and grain yield in rice.

  12. Gibberellin homeostasis and plant height control by EUI and a role for gibberellin in root gravity responses in rice.

    Science.gov (United States)

    Zhang, Yingying; Zhu, Yongyou; Peng, Yu; Yan, Dawei; Li, Qun; Wang, Jianjun; Wang, Linyou; He, Zuhua

    2008-03-01

    The rice Eui (ELONGATED UPPERMOST INTERNODE) gene encodes a cytochrome P450 monooxygenase that deactivates bioactive gibberellins (GAs). In this study, we investigated controlled expression of the Eui gene and its role in plant development. We found that Eui was differentially induced by exogenous GAs and that the Eui promoter had the highest activity in the vascular bundles. The eui mutant was defective in starch granule development in root caps and Eui overexpression enhanced starch granule generation and gravity responses, revealing a role for GA in root starch granule development and gravity responses. Experiments using embryoless half-seeds revealed that RAmy1A and GAmyb were highly upregulated in eui aleurone cells in the absence of exogenous GA. In addition, the GA biosynthesis genes GA3ox1 and GA20ox2 were downregulated and GA2ox1 was upregulated in eui seedlings. These results indicate that EUI is involved in GA homeostasis, not only in the internodes at the heading stage, but also in the seedling stage, roots and seeds. Disturbing GA homeostasis affected the expression of the GA signaling genes GID1 (GIBBERELLIN INSENSITIVE DWARF 1), GID2 and SLR1. Transgenic RNA interference of the Eui gene effectively increased plant height and improved heading performance. By contrast, the ectopic expression of Eui under the promoters of the rice GA biosynthesis genes GA3ox2 and GA20ox2 significantly reduced plant height. These results demonstrate that a slight increase in Eui expression could dramatically change rice morphology, indicating the practical application of the Eui gene in rice molecular breeding for a high yield potential.

  13. Effects of toxic levels of sodium, arsenic, iron and aluminum on the rice plant

    Energy Technology Data Exchange (ETDEWEB)

    Lockard, R G; McWalter, A R

    1956-01-01

    The results of two sand culture experiments on rice plants are described. In one, the toxic effects of sodium, as sodium chloride, and of arsenic, as sodium arsenate, were tested; in the other, iron, chelated with the disodium salt of ethylene-diamine-tetra-acetic acid, and aluminium, as aluminium sulfate, were tried out. The former was undertaken because of the existence of these sub

  14. Influence of intercrops on pests' populations in upland rice ( Oriza ...

    African Journals Online (AJOL)

    Rice and groundnut (100,000 - 200,000 plants/ha) intercrop is recommended for reduced incidence of C. zacconius and N. viridula. This result demonstrates that a careful selection of crop combination and plant population could lead to reduced insect pests' incidence in upland rice. Key words: intercrops, plant populations, ...

  15. Selective intake of potassium from K-bearing silicate minerals by sunflower and upland rice inferred from Eu anomaly. Implication for weathering as a direct consequence of plant physiology

    International Nuclear Information System (INIS)

    Akagi, Tasuku; Saito, Sakura; Watanabe, Shin-ichi; Sugiyama, Megumi; Ae, Noriharu

    2006-01-01

    Two crops (sunflower and upland rice) cultivated using three K-bearing minerals and KCl by Sugiyama and Ae (2000) were analyzed for rare earth elements (REEs). The two crops had been reported by them to general more available silica in soil (especially in the case of sunflower) and absorbed silica in plants (especially in the case of upland rice) than that available originally in soil. The K-bearing minerals included biotite, muscovite, and K-feldspar. The REE patterns of individual crop specimens exhibited different extents of Eu anomaly; upland rice exhibited more varying extent of Eu anomaly than sunflower. It is inferred that REEs released from the K-bearing minerals had a longer contact with soil in the case of sunflower than in the case of upland rice. By the scrutiny of the extent of the Eu anomaly, it was found that upland rice took in K and REEs from all the K-bearing minerals, including hardly-soluble feldspar. Eu anomaly can be a good proxy of sources of inorganic nutrients in plants as well as of the directness of absorption of the nutrients. When the present results are viewed from a different angle, they endorse that plant-induced weathering is equivalent to physiological action of plants. (author)

  16. Influence of cadmium stress on root exudates of high cadmium accumulating rice line (Oryza sativa L.).

    Science.gov (United States)

    Fu, Huijie; Yu, Haiying; Li, Tingxuan; Zhang, Xizhou

    2018-04-15

    A hydroponic experiment with two different cadmium (Cd) accumulating rice lines of Lu527-8 (the high Cd accumulating rice line) and Lu527-4 (the normal rice line) was carried out to explore the links among Cd stress, root exudates and Cd accumulation. The results showed that (1) Cd stress increased quantities of organic acids, but had no effect on composition in root exudates of the two rice lines. In Cd treatments, the contents of every detected organic acid in root exudates of Lu527-8 were 1.76-2.43 times higher than those of Lu527-4. Significant positive correlations between organic acids contents and Cd contents in plants were observed in both rice lines, except that malic acid was only highly relevant to Lu527-8, but not to Lu527-4. (2) Both composition and quantities of amino acids in root exudates changed a lot under Cd stress and this change differed in two rice lines. In control, four amino acids (glutamic acid, glycine, tyrosine and histidine) were detected in two rice lines. Under Cd stress, eight amino acids in Lu527-8 and seven amino acids in Lu527-4 could be detected, among which phenylalanine was only secreted by Lu527-8 and alanine, methionine and lysine were secreted by both rice lines. The contents of those four newly secreted amino acids from Lu527-8 increased significantly with the increase of Cd dose and each had a high-positive correlation with Cd contents, but the same change did not appear in Lu527-4. The difference between two rice lines in secretion of organic acids and amino acids may be related to their different Cd uptake properties. Copyright © 2017 Elsevier Inc. All rights reserved.

  17. Micro-aerobics: when rice plants lose their resistance against oxygen

    International Nuclear Information System (INIS)

    Reuss, J; Harren, F J M

    2008-01-01

    Photoacoustic determination of ethane, ethanol and acetaldehyde releases from 14 d old rice seedlings leads to the conclusion that rice seedlings start suffering significant lipid peroxidation under micro-aerobic conditions. To produce micro-aerobic conditions in otherwise normal atmospheres, the oxygen concentration has been reduced to a value between 0.3 and 0.05% (v/v). The defense of the rice seedlings against oxygenic radicals becomes insufficient under these almost anaerobic conditions. The findings presented here are relevant for the clarification of what causes non-survival of rice seedlings under prolonged submergence.

  18. Rice (Oryza sativa) Laccases Involved in Modification and Detoxification of Herbicides Atrazine and Isoproturon Residues in Plants.

    Science.gov (United States)

    Huang, Meng Tian; Lu, Yi Chen; Zhang, Shuang; Luo, Fang; Yang, Hong

    2016-08-24

    Atrazine (ATR) and isoproturon (IPU) as herbicides have become serious environmental contaminants due to their overuse in crop production. Although ATR and IPU in soils are easily absorbed by many crops, the mechanisms for their degradation or detoxification in plants are poorly understood. This study identified a group of novel genes encoding laccases (EC 1.10.3.2) that are possibly involved in catabolism or detoxification of ATR and IPU residues in rice. Transcriptome profiling shows at least 22 differentially expressed laccase genes in ATR/IPU-exposed rice. Some of the laccase genes were validated by RT-PCR analysis. The biochemical properties of the laccases were analyzed, and their activities in rice were induced under ATR/IPU exposure. To investigate the roles of laccases in degrading or detoxifying ATR/IPU in rice, transgenic yeast cells (Pichia pastoris X-33) expressing two rice laccase genes (LOC_Os01g63180 and LOC_Os12g15680) were generated. Both transformants were found to accumulate less ATR/IPU compared to the control. The ATR/IPU-degraded products in the transformed yeast cells using UPLC-TOF-MS/MS were further characterized. Two metabolites, hydroxy-dehydrogenated atrazine (HDHA) and 2-OH-isopropyl-IPU, catalyzed by laccases were detected in the eukaryotic cells. These results indicate that the laccase-coding genes identified here could confer degradation or detoxification of the herbicides and suggest that the laccases could be one of the important enzymatic pathways responsible for ATR/IPU degradation/detoxification in rice.

  19. Application of Radiation Degraded Chitosan as Plant Growth Promoter. A Pilot Scale Production and Field Trial Study of Radiation Processed Chitosan as Plant Growth Promoter for Rice Crops

    International Nuclear Information System (INIS)

    Dahlan, Khairul Zaman Hj Mohd; Hashim, Kamaruddin; Bahari, Kamarudin

    2010-01-01

    The application of radiation processed chitosan as plant growth promoter has been carried out in the 24 hectares of rice crops. For the field trial, a pilot scale production of oligochitosan was established using gamma irradiation for partial degradation of chitosan powder of DDA 90% and followed by gamma irradiation of aqueous solution of 3% irradiated chitosan powder in 2% lactic acids (3CL2). Radiation dose of 50 kGy was selected for initial degradation of chitosan powder and followed by 12 kGy irradiation of 3CL2. A viscosity average molecular weight of ~10,000 of oligochitosan was obtained and subsequently used in the field trial of MR219 type of rice seeds on 24 hectares of rice plots. The seedlings were carried out after the rice seeds were soaked 24hrs in water and 30 minutes in 200ppm oligochitosan. The rice plots that were sprayed with oligochitosan were found to have higher resistant towards blast diseases. Oligochitosan of 40ppm was found to be effective as fungicides and resulted in the increase of yield of rice seeds of about 5%. (author)

  20. Current Insights into Research on Rice stripe virus

    Directory of Open Access Journals (Sweden)

    Won Kyong Cho

    2013-09-01

    Full Text Available Rice stripe virus (RSV is one of the most destructive viruses of rice, and greatly reduces rice production in China, Japan, and Korea, where mostly japonica cultivars of rice are grown. RSV is transmitted by the small brown plant-hopper (SBPH in a persistent and circulative-propagative manner. Several methods have been developed for detection of RSV, which is composed of four single-stranded RNAs that encode seven proteins. Genome sequence data and comparative phylogenetic analysis have been used to identify the origin and diversity of RSV isolates. Several rice varieties resistant to RSV have been selected and QTL analysis and fine mapping have been intensively performed to map RSV resistance loci or genes. RSV genes have been used to generate several genetically modified transgenic rice plants with RSV resistance. Recently, genome-wide transcriptome analyses and deep sequencing have been used to identify mRNAs and small RNAs involved in RSV infection; several rice host factors that interact with RSV proteins have also been identified. In this article, we review the current statues of RSV research and propose integrated approaches for the study of interactions among RSV, rice, and the SBPH.

  1. Growth, Metabolism and Yield of Rice Cultivated in Soils Amended with Fly Ash and Cyanobacteria and Metal Loads in Plant Parts

    OpenAIRE

    Rabindra N. Padhy; Nabakishore Nayak; Rajesh R. Dash-Mohini; Shakti Rath; Rajani K. Sahu

    2016-01-01

    Soil amendment with fly ash (FA) and combined supplementation with N2-fixing cyanobacteria masses as biofertilizer were done in field experiments with rice. Amendments with FA levels, 0, 0.5, 1.0, 2.0, 4.0, 8.0 and 10.0 kg/m2, caused increase in growth and yield of rice up to 8.0 kg/m2, monitored with several parameters. Pigment contents and enzyme activities of leaves were enhanced by FA, with the maximum level of FA at 10.0 kg/m2. Protein content of rice seeds was the highest in plants grow...

  2. Variations in characters of diploid-like plants derived from gamma-irradiated tetraploids in rice (Oryza sativa L.)

    International Nuclear Information System (INIS)

    Yamamoto, K.; Fukuoka, H.; Kageyama, Y.; Takeda, G.

    1990-01-01

    Full text: Populations of artificial autotetraploids of rice (Oryza sativa L. cvs. 'Nipponbare' and 'Fukunishiki') were repeatedly irradiated with gamma-rays through several generations. Plants which did not differ in appearance from the original diploid plants occurred occasionally in the populations. Nine diploid-like plants were obtained so far, and their generations were advanced without irradiation in order to examine the mode of segregation of characters in their progeny. The results indicate that diploid-like plants with multiple mutant characters could be obtained and that dominant characters, i.e. awned spikelet and coloured apiculus, were included in the mutant characters. The diploid-like plants had 2n=24 chromosomes. (author)

  3. Mercury in rice (Oryza sativa L.) and rice-paddy soils under long-term fertilizer and organic amendment.

    Science.gov (United States)

    Tang, Zhenya; Fan, Fangling; Wang, Xinyue; Shi, Xiaojun; Deng, Shiping; Wang, Dingyong

    2018-04-15

    High levels of mercury (Hg), especially methylmercury (MeHg), in rice is of concern due to its potential of entering food chain and the high toxicity to human. The level and form of Hg in rice could be influenced by fertilizers and other soil amendments. Studies were conducted to evaluate the effect of 24 years application of chemical fertilizers and organic amendments on total Hg (THg) and MeHg and their translocation in soil, plants, and rice grain. All treatments led to significantly higher concentrations of MeHg in grain than those from the untreated control. Of nine treatments tested, chemical fertilizers combining with returning rice straw (NPK1+S) led to highest MeHg concentration in grain and soil; while the nitrogen and potassium (NK) treatment led to significantly higher THg in grain. Concentrations of soil MeHg were significantly correlated with THg in soil (r = 0.59 *** ) and MeHg in grain (r = 0.48 *** ). Calcium superphosphate negatively affected plant bioavailability of soil Hg. MeHg concentration in rice was heavily influenced by soil Hg levels. Phosphorus fertilizer was a main source contributing to soil THg, while returning rice straw to the field contributed significantly to MeHg in soil and rice grain. As a result, caution should be exercised in soil treatment or when utilizing Hg-contaminated soils to produce rice for human consumption. Strategic management of rice straw and phosphorus fertilizer could be effective strategies of lowering soil Hg, which would ultimately lower MeHg in rice and the risk of Hg entering food chain. Copyright © 2017 Elsevier Inc. All rights reserved.

  4. Impact of Day Intervals on Sequential Infestations of the Rice Leaffolder (Guenée (Lepidoptera: Pyralidae and the White-Backed Rice Planthopper (Horváth on Rice Grain Damage

    Directory of Open Access Journals (Sweden)

    Li-Ben Jiang

    2014-01-01

    Full Text Available The present study illustrates that different day intervals (DIs between the sequential infestations of two pest species, the rice leaffolder (RLF Cnaphalocrocis medinalis Guenée (Lepidoptera: Pyralidae and the white-backed rice planthopper (WBPH Sogatella furcifera Horváth (Hemiptera: Delphacidae, have a significant impact on the rice yield loss rate (YLR and on the carbohydrate contents of rice plants. For WBPH release after RLF release (WRARR, the YLR decreased with the increasing DIs, and the YLR at the 24 DI was significantly lower compared to that at the 6 and 12 DIs and had a minimum value for a simultaneous infestation of the two pest species (SITS. In contrast, for RLF release after WBPH release (RRAWR, the YLR at the 24 DI had a maximum value and was significantly higher compared to that at the 6 and 12 DIs and the SITS. These findings indicate that damaged rice plants gradually recover, with an increase in the DI for WRARR. The above results were demonstrated by biochemical tests. Therefore, the sequential infestation of the two pest species and their DIs should be considered for integrated pest management (IPM and control strategies for rice pests.

  5. Solophos fertilizer improved rice plant growth in aerobic soil

    OpenAIRE

    NIE, Lixiao; PENG, Shaobing; BOUMAN, Bas A.M.; HUANG, Jianliang; CUI, Kehui; VISPERAS, Romeo M.; PARK, Hong-Kyu

    2007-01-01

    Yield decline of continuous monocropping of aerobic rice is the major constraint to the wide adoption of aerobic rice technology. This study was conducted to determine if solophos fertilizer could be used to reverse the yield decline of this cropping system using pot and micro-plot experiments. The soil for the pot experiment was collected from a field where aerobic rice has been grown continuously for 11 seasons at the IRRI farm. Four rates (4, 6, 8, and 10gpot^) of solophos application were...

  6. Effects of Soil Veterinary Antibiotics Pollution on Rice Growth

    OpenAIRE

    XU Qiu-tong; GU Guo-ping; ZHANG Ming-kui

    2016-01-01

    To understand the potential effect of soil veterinary antibiotics pollution on the growth of rice, a main food crop in China, oxytetracycline which was used widely in livestock and poultry breeding was selected to test the effects of different levels of soil antibiotics pollution on growth and yield of rice plant at both seedling and growth periods. Relationship between oxytetracycline accumulated in different organs of rice plant and oxytetracycline pollution levels in the soil was character...

  7. Comparison of Effect of Brassinosteroid and Gibberellin Biosynthesis Inhibitors on Growth of Rice Seedlings

    Directory of Open Access Journals (Sweden)

    Tadashi Matusmoto

    2016-01-01

    Full Text Available Brassinosteroid (BR and gibberellin (GA are two predominant plant hormones that regulate plant cell elongation. Mutants disrupt the biosynthesis of these hormones and display different degrees of dwarf phenotypes in rice. Although the role of each plant hormone in promoting the longitudinal growth of plants has been extensively studied using genetic methods, their relationship is still poorly understood. In this study, we used two specific inhibitors targeting BR and GA biosynthesis to investigate the roles of BR and GA in growth of rice seedlings. Yucaizol, a specific inhibitor of BR biosynthesis, and Trinexapac-ethyl, a commercially available inhibitor of GA biosynthesis, were used. The effect of Yucaizol on rice seedlings indicated that Yucaizol significantly retarded stem elongation. The IC50 value was found to be approximately 0.8 μmol/L. Yucaizol also induced small leaf angle phenocopy in rice seedlings, similarly to BR-deficient rice, while Trinexapac-ethyl did not. When Yucaizol combined with Trinexapac-ethyl was applied to the rice plants, the mixture of these two inhibitors retarded stem elongation of rice at lower doses. Our results suggest that the use of a BR biosynthesis inhibitor combined with a GA biosynthesis inhibitor may be useful in the development of new technologies for controlling rice plant height.

  8. EFFECT OF PLANTING MEDIA (RICE HUSK AND COCO PEAT ON THE UPTAKE OF CADMIUM AND SOME MICRONUTRIENTS IN CHILLI (CAPSICUM ANNUM L.

    Directory of Open Access Journals (Sweden)

    Abdalla M. Alzrog

    2013-09-01

    Full Text Available The ecological effects of heavy metals or trace elements in soils are closely related to their contents and speciation in the soil. They play a significant role in the metabolic pathways throughout the growth and development of plants when presented in required concentration. In this study the effect of rice husk and coco peat media on the cadmium uptake by chilli plant (Capsicum annuum L was investigated. The experiment was conducted in complete randomized block design (RBD comprising of three replications. Various concentrations of Cd were dosed to the media once after one week of transplantation. All the required agricultural practices were applied uniformly until harvesting. Cd accumulation in roots, shoots and fruits were analyzed during vegetative, flowering and maturity stages, using atomic absorption spectrophotometric analysis (AAS. Results showed that both planting media exhibited higher accumulation of Cd in roots and shoots at the vegetative stage. The accumulated amount was found significantly dependent on the Cd dose injected to the media. Consequently, micronutrients contents and plant growth were also affected. The accumulated Cd in fruits was found slightly less in rice husk than coco peat media and above the prescribed safety limits recommended by FAO and WHO. Rice husk has higher impact on the microneutrients absorption than coco peat media. In this study, root length, plant hight, dry weight and fruits showed small differences among growing media.

  9. Study on the Potential of Rice Straws as a Supplementary Fuel in Very Small Power Plants in Thailand

    Directory of Open Access Journals (Sweden)

    Penwadee Cheewaphongphan

    2018-01-01

    Full Text Available Agricultural residue is a major raw material for renewable energy production, particularly heat production, in Thailand. Meanwhile, the process-based residue, such as bagasse, rice husk, wood residue, palm fiber, palm shell, and saw dust, is used as a fuel for energy production in the agro-industry. Hence, this study is intended to assess the net potential and capacity of alternative agricultural residues, specifically rice straws, to serve as the supplementary fuel for very small power plants (VSPPs in Thailand. According to the results obtained during the crop season of 2015/2016, approximately 26 Mt of rice straws were generated upon the harvesting process. The net potential of rice straws, including those that were burned and those that were left in the fields, was only about 15% or 3.85 Mt, which could be used for heat and electricity production at 1331 kilotons of oil equivalent (ktoe or 457 MWe. As agro-residues vary by seasonality, the peak season of rice straws was in November, where approximately 1.64 Mt (43% were generated, followed by December, at 1.32 Mt (34%. On the basis of the results, rice straw has the potential to serve as a fuel supply for VSPPs at 14.2%, 21.6%, 26.3%, and 29.0% for the radii of compilation at 24, 36, 48 km and 60 km, respectively.

  10. Possible contribution of induced mutations on breaking the rice yield barrier

    International Nuclear Information System (INIS)

    Sobrizal and Moch Ismachin

    2006-01-01

    At The World Rice Research Conference in Tsukuba, Japan, on 4 — 7 November 2004, there was an active discussion on how to increase the world rice yield production. Breeders agreed that after IR8, the yield potential of rice varieties could not increase drastically. From the breeding point of view, there were two approaches that already started in three to one decade ago, but it is still unfinished yet. These two approaches were to do breeding for hybrid rice varieties or breeding for new plant idiotype varieties. The idea to produce hybrid rice was stimulated by the success of hybrid corn, onion, and sorghum on commercial basis. Among the countries that are working for producing hybrid rice varieties, China was the leading one. China produced hybrid rice varieties and which are planted already in very large area. This success influenced other countries to do the same, including Indonesia. Now Indonesia has already released 11 hybrid rice varieties. Knowing so many characters that are already present in the rice collection, the idea to produce new plant idiotype appears. It seems not difficult to unite selected characters to become a new plant idiotype. In fact, however, up to now there are still a lot of obstacles that make those two approaches could not reach the real goal. This paper will discuss the possible contribution of induced mutations toward the success of these two approaches. (author)

  11. Sulfate-reducing bacteria in rice field soil and on rice roots.

    Science.gov (United States)

    Wind, T; Stubner, S; Conrad, R

    1999-05-01

    Rice plants that were grown in flooded rice soil microcosms were examined for their ability to exhibit sulfate reducing activity. Washed excised rice roots showed sulfate reduction potential when incubated in anaerobic medium indicating the presence of sulfate-reducing bacteria. Rice plants, that were incubated in a double-chamber (phylloshpere and rhizosphere separated), showed potential sulfate reduction rates in the anoxic rhizosphere compartment. These rates decreased when oxygen was allowed to penetrate through the aerenchyma system of the plants into the anoxic root compartment, indicating that sulfate reducers on the roots were partially inhibited by oxygen or that sulfate was regenerated by oxidation of reduced S-compounds. The potential activity of sulfate reducers on rice roots was consistent with MPN enumerations showing that H2-utilizing sulfate-reducing bacteria were present in high numbers on the rhizoplane (4.1 x 10(7) g-1 root fresh weight) and in the adjacent rhizosperic soil (2.5 x 10(7) g-1 soil dry weight). Acetate-oxidizing sulfate reducers, on the other hand, showed highest numbers in the unplanted bulk soil (1.9 x 10(6) g-1 soil dry weight). Two sulfate reducing bacteria were isolated from the highest dilutions of the MPN series and were characterized physiologically and phylogenetically. Strain F1-7b which was isolated from the rhizoplane with H2 as electron donor was related to subgroup II of the family Desulfovibrionaceae. Strain EZ-2C2, isolated from the rhizoplane on acetate, grouped together with Desulforhabdus sp. and Syntrophobacter wolinii. Other strains of sulfate-reducing bacteria originated from bulk soil of rice soil microcosms and were isolated using different electron donors. From these isolates, strains R-AcA1, R-IbutA1, R-PimA1 and R-AcetonA170 were Gram-positive bacteria which were affiliated with the genus Desulfotomaculum. The other isolates were members of subgroup II of the Desulfovibrionaceae (R-SucA1 and R-LacA1), were

  12. A comparative study of competitiveness between different genotypes of weedy rice (Oryza sativa) and cultivated rice.

    Science.gov (United States)

    Dai, Lei; Dai, Weimin; Song, Xiaoling; Lu, Baorong; Qiang, Sheng

    2014-01-01

    Competition from weedy rice can cause serious yield losses to cultivated rice. However, key traits that facilitate competitiveness are still not well understood. To explore the mechanisms behind the strong growth and competitive ability, replacement series experiments were established with six genotypes of weedy rice from different regions and one cultivated rice cultivar. (1) Weedy rice from southern China had the greatest impact on growth and yield of cultivated rice throughout the entire growing season. Weedy rice from the northeast was very competitive during the early vegetative stage while the competitive effects of eastern weedy rice were more detrimental at later crop-growth stages. (2) As the proportion of weedy rice increased, plant height, tillers, above-ground biomass, and yield of cultivated rice significantly declined; the crop always being at disadvantage regardless of proportion. (3) Weedy biotypes with greater diversity as estimated by their Shannon indexes were more detrimental to the growth and yield of cultivated rice. Geographic origin (latitude) of weedy rice biotype, its mixture proportion under competition with the crop and its genetic diversity are determinant factors of the outcome of competition and the associated decline in the rice crop yield. © 2013 Society of Chemical Industry. © 2013 Society of Chemical Industry.

  13. QTL analysis of internode elongation in response to gibberellin in deepwater rice

    OpenAIRE

    Nagai, Keisuke; Kondo, Yuma; Kitaoka, Takuya; Noda, Tomonori; Kuroha, Takeshi; Angeles-Shim, Rosalyn B.; Yasui, Hideshi; Yoshimura, Atsushi; Ashikari, Motoyuki

    2014-01-01

    Gibberellin (GA) is a plant hormone that has important roles in numerous plant developmental phases. Rice plants known as deepwater rice respond to flooding by elongating their internodes to avoid anoxia. Previous studies reported that GA is essential for internode elongation in deepwater rice. Quantitative trait locus (QTL) analyses identified QTLs regulating internode elongation in response to deepwater conditions. However, the interaction between internode elongation and regulators of GA s...

  14. Rice Combine Harvester: Its Effects to the Livelihood of Rice-Field Tenants in a Second Class Municipality

    Directory of Open Access Journals (Sweden)

    Jesrael Medrano

    2016-11-01

    Full Text Available Over the past few years, the advancement of modern technology has intensely overhauled society. People use and benefit from modern technology, and the tremendous opportunities it provides play a significant role in almost all aspects of human life. However, too much usage of this has its repercussions as well. Technological and mechanical change in agricultural sector and its impact on the work force have already become one of the neglected concerns of farmers in Amulung, a second class municipality of Cagayan. The newly introduced rice combine harvesters are already dominating the rice fields in Amulung during harvesting seasons. Thus, it replaces the conventional system of harvesting using human labor and sickles. This study is conducted to determine the effects of rice combine harvesters to the livelihood of rice field tenants in Amulung, Cagayan. Using purposive sampling through site selection approach and networking, 25 rice field tenants were selected as participants of this study. In–depth conversations and guided interview had served as the main instruments used by the researchers to gather the needed data. The results showed that rice combine harvesters cause unemployment and migration among the participants and degrade their sense of solidarity and camaraderie. As a result, the participants sought alternative activities which they can be paid off. Also, they engage themselves in livestock and poultry production, and even in informal sector economy just to cope with the prevalence of rice combine harvesters.

  15. Heavy metal contamination and risk assessment in water, paddy soil, and rice around an electroplating plant.

    Science.gov (United States)

    Liu, Jie; Zhang, Xue-Hong; Tran, Henry; Wang, Dun-Qiu; Zhu, Yi-Nian

    2011-11-01

    The objective of this paper is to assess the impact of long-term electroplating industrial activities on heavy metal contamination in agricultural soils and potential health risks for local residents. Water, soil, and rice samples were collected from sites upstream (control) and downstream of the electroplating wastewater outlet. The concentrations of heavy metals were determined by an atomic absorption spectrophotometer. Fractionation and risk assessment code (RAC) were used to evaluate the environmental risks of heavy metals in soils. The health risk index (HRI) and hazard index (HI) were calculated to assess potential health risks to local populations through rice consumption. Hazardous levels of Cu, Cr, and Ni were observed in water and paddy soils at sites near the plant. According to the RAC analysis, the soils showed a high risk for Ni and a medium risk for Cu and Cr at certain sites. The rice samples were primarily contaminated with Ni, followed by Cr and Cu. HRI values >1 were not found for any heavy metal. However, HI values for adults and children were 2.075 and 1.808, respectively. Water, paddy soil, and rice from the studied area have been contaminated by Cu, Cr, and Ni. The contamination of these elements is related to the electroplating wastewater. Although no single metal poses health risks for local residents through rice consumption, the combination of several metals may threaten the health of local residents. Cu and Ni are the key components contributing to the potential health risks.

  16. Evaluation of Mercury Uptake and Distribution in Rice (Oryza sativa L.).

    Science.gov (United States)

    Hang, Xiaoshuai; Gan, Fangqun; Chen, Yudong; Chen, Xiaoqin; Wang, Huoyan; Du, Changwen; Zhou, Jianmin

    2018-03-01

    Mercury (Hg) contamination in soil-rice systems from industry, mining and agriculture has received increasing attention recently in China. Pot experiments were conducted to research the Hg accumulation capacity of rice under exogenous Hg in the soil and study the major soil factors affecting translocation of Hg from soil to plant. Soil treated with 2 mg kg -1 Hg decreased rice grain yield and inhibited the growth of rice plants. With increased Hg contamination of the rice, the enrichment rate of Hg was significantly higher in the rice grain than that in the stalk and leaf. Soil pH and cation exchange capacity are the key factors controlling Hg bioavailability in soils.

  17. Impeded Carbohydrate Metabolism in Rice Plants under Submergence Stress

    Directory of Open Access Journals (Sweden)

    Malay Kumar ADAK

    2011-06-01

    Full Text Available The detrimental effects of submergence on physiological performances of some rice varieties with special references to carbohydrate metabolisms and their allied enzymes during post-flowering stages have been documented and clarified in the present investigation. It was found that photosynthetic rate and concomitant translocation of sugars into the panicles were both related to the yield. The detrimental effects of the complete submergence were recorded in generation of sucrose, starch, sucrose phosphate synthase and phosphorylase activity in the developing panicles of the plants as compared to those under normal or control (i.e. non-submerged condition. The accumulation of starch was significantly lower in plants under submergence and that was correlated with ADP-glucose pyrophosphorylase activity. Photosynthetic rate was most affected under submergence in varying days of post-flowering and was also related to the down regulation of Ribulose bisphosphate carboxylase activity. However, under normal or control condition, there recorded a steady maintenance of photosynthetic rate at the post-flowering stages and significantly higher values of Ribulose bisphosphate carboxylase activity. Still, photosynthetic rate of the plants under both control and submerged conditions had hardly any significant correlation with sugar accumulation and other enzymes of carbohydrate metabolism like invertase with grain yield. Finally, plants under submergence suffered significant loss of yield by poor grain filling which was related to impeded carbohydrate metabolism in the tissues. It is evident that loss of yield under submergence is attributed both by lower sink size or sink capacity (number of panicles, in this case as well as subdued carbohydrate metabolism in plants and its subsequent partitioning into the grains.

  18. Effect of straw application on nitrogen uptake and growth of rice

    International Nuclear Information System (INIS)

    Haryanto; Idawati.

    1990-01-01

    A pot experiment has been conducted to know the effect of straw application on the efficiency of nitrogen uptake and growth rice plant. The rice straw was applied at different time i.e. 0, 1, 2, 3 and 4 weeks before tranplanting. Soil without rice straw was used as control. Thirty gram of rice straw having 3.61 percent of N-15 atom excess was incorporated into 6 kg of latosol soil originated from Pasar jumat, in which Atomoita I, a lowland rice variety, was planted. Urea was given once at the tranplanting time. The result showed that the longer the time of the rice straw application prior to the transplanting time, the higher the N-straw uptake efficiency in the rice plant at any different stages. The highest efficiency was 6.14 percent, reached with straw applicaions at 4 weeks before tranplanting. Compared to the control, straw applications 2 weeks or more before tranplanting resulted in higher grain production, while application at or before 2 weeks of tranplanting produced lower production. (authors). 9 refs.; 5 tabs

  19. Fertilizer-n uptake and distribution in rice plants using 15N tracer technique

    International Nuclear Information System (INIS)

    Yan Juan; Shen Qirong; Yin Bin; Wan Xinjun

    2009-01-01

    Fertilizer-nitrogen (N) uptake and distribution in rice were studied using 15 N tracer technique. The results obtained were as follows. At the tillering, jointing and booting, and anthesis stages, 23.1%, 8.3% and 19.9% of N were taken from fertilizer applied in base (N1), tillering (N2) and jointing and booting (N3), respectively. The 15 N translocation from anthesis to maturity was in the order of N3>N1>N2, but the 15 N translocation efficiency was higher in N1 (base fertilizer treatment) than in the other two treatments. At maturity, the 15 N distribution in straw in the treatments of N1, N2 and N3 was only 24.3%, 26.7% and 30.4%, respectively. No matter what time the N fertilizer was applied, the 15 N uptake was mostly distributed in leaves, then in the sheath, the least in stem, and 15 N distribution in spike increased with the increased 15 N translocation from nutritional organs to spike after anthesis. The study also showed that the 15 N uptake at maturity in N1, N2 and N3 treatments was 10.3%, 5.9% and 12.4%, respectively. The results indicated that (1) when soil N content was not high, the base fertilizer application was important to rice growth, and optimal increment might help increase tillering, and improve rice quality; (2) the initiation fertilizer significantly promoted quantities during grain filling, and thus application of N fertilizer in initiation was of considerable advance in increasing N harvest index (NHI); (3) the rice plants absorbed less N applied in tillering stage due to a big N loss in that period. Therefore a little bit increase of base N fertilizer with no or very small amount of tillering fertilizer, together with some topdressing of N fertilizer during initiation could improve N uptake by rice. (authors)

  20. DNA repair and recombination in higher plants: insights from comparative genomics of arabidopsis and rice

    Directory of Open Access Journals (Sweden)

    Choudhury Swarup

    2010-07-01

    Full Text Available Abstract Background The DNA repair and recombination (DRR proteins protect organisms against genetic damage, caused by environmental agents and other genotoxic agents, by removal of DNA lesions or helping to abide them. Results We identified genes potentially involved in DRR mechanisms in Arabidopsis and rice using similarity searches and conserved domain analysis against proteins known to be involved in DRR in human, yeast and E. coli. As expected, many of DRR genes are very similar to those found in other eukaryotes. Beside these eukaryotes specific genes, several prokaryotes specific genes were also found to be well conserved in plants. In Arabidopsis, several functionally important DRR gene duplications are present, which do not occur in rice. Among DRR proteins, we found that proteins belonging to the nucleotide excision repair pathway were relatively more conserved than proteins needed for the other DRR pathways. Sub-cellular localization studies of DRR gene suggests that these proteins are mostly reside in nucleus while gene drain in between nucleus and cell organelles were also found in some cases. Conclusions The similarities and dissimilarities in between plants and other organisms' DRR pathways are discussed. The observed differences broaden our knowledge about DRR in the plants world, and raises the potential question of whether differentiated functions have evolved in some cases. These results, altogether, provide a useful framework for further experimental studies in these organisms.

  1. DNA repair and recombination in higher plants: insights from comparative genomics of Arabidopsis and rice.

    Science.gov (United States)

    Singh, Sanjay K; Roy, Sujit; Choudhury, Swarup Roy; Sengupta, Dibyendu N

    2010-07-21

    The DNA repair and recombination (DRR) proteins protect organisms against genetic damage, caused by environmental agents and other genotoxic agents, by removal of DNA lesions or helping to abide them. We identified genes potentially involved in DRR mechanisms in Arabidopsis and rice using similarity searches and conserved domain analysis against proteins known to be involved in DRR in human, yeast and E. coli. As expected, many of DRR genes are very similar to those found in other eukaryotes. Beside these eukaryotes specific genes, several prokaryotes specific genes were also found to be well conserved in plants. In Arabidopsis, several functionally important DRR gene duplications are present, which do not occur in rice. Among DRR proteins, we found that proteins belonging to the nucleotide excision repair pathway were relatively more conserved than proteins needed for the other DRR pathways. Sub-cellular localization studies of DRR gene suggests that these proteins are mostly reside in nucleus while gene drain in between nucleus and cell organelles were also found in some cases. The similarities and dissimilarities in between plants and other organisms' DRR pathways are discussed. The observed differences broaden our knowledge about DRR in the plants world, and raises the potential question of whether differentiated functions have evolved in some cases. These results, altogether, provide a useful framework for further experimental studies in these organisms.

  2. Influence of nitrogen loading and plant nitrogen assimilation on nitrogen leaching and N₂O emission in forage rice paddy fields fertilized with liquid cattle waste.

    Science.gov (United States)

    Riya, Shohei; Zhou, Sheng; Kobara, Yuso; Sagehashi, Masaki; Terada, Akihiko; Hosomi, Masaaki

    2015-04-01

    Livestock wastewater disposal onto rice paddy fields is a cost- and labor-effective way to treat wastewater and cultivate rice crops. We evaluated the influence of nitrogen loading rates on nitrogen assimilation by rice plants and on nitrogen losses (leaching and N2O emission) in forage rice fields receiving liquid cattle waste (LCW). Four forage rice fields were subjected to nitrogen loads of 107, 258, 522, and 786 kg N ha(-1) (N100, N250, N500, and N750, respectively) using basal fertilizer (chemical fertilizer) (50 kg N ha(-1)) and three LCW topdressings (each 57-284 kg N ha(-1)). Nitrogen assimilated by rice plants increased over time. However, after the third topdressing, the nitrogen content of the biomass did not increase in any treatment. Harvested aboveground biomass contained 93, 60, 33, and 31 % of applied nitrogen in N100, N250, N500, and N750, respectively. The NH4 (+) concentration in the pore water at a depth of 20 cm was less than 1 mg N L(-1) in N100, N250, and N500 throughout the cultivation period, while the NH4 (+) concentration in N750 increased to 3 mg N L(-1) after the third topdressing. Cumulative N2O emissions ranged from -0.042 to 2.39 kg N ha(-1); the highest value was observed in N750, followed by N500. In N750, N2O emitted during the final drainage accounted for 80 % of cumulative N2O emissions. This study suggested that 100-258 kg N ha(-1) is a recommended nitrogen loading rate for nitrogen recovery by rice plants without negative environmental impacts such as groundwater pollution and N2O emission.

  3. Reproducible and expedient rice regeneration system using in vitro ...

    African Journals Online (AJOL)

    Inevitable prerequisite for expedient regeneration in rice is the selection of totipotent explant and developing an apposite combination of growth hormones. Here, we reported a reproducible regeneration protocol in which basal segments of the stem of the in vitro grown rice plants were used as ex-plant. Using the protocol ...

  4. Advanced Backcross QTL Analysis for the Whole Plant Growth Duration Salt Tolerance in Rice (Oryza sativa L.)

    Institute of Scientific and Technical Information of China (English)

    CHAI Lu; LI Zhi-kang; ZHANG Jian; PAN Xiao-biao; ZHANG Fan; ZHENG Tian-qing; ZHAO Xiu-qing; WANG Wen-sheng; Ali Jauhar; XU Jian-long

    2014-01-01

    Salinity is a major factor limiting rice yield in coastal areas of Asia. To facilitate breeding salt tolerant rice varieties, the whole-plant growth duration salt tolerance (ST) was genetically dissected by phenotyping two sets of BC2F5 introgression lines (ILs) for four yield traits under severe natural salt stress and non-stress ifled conditions using SSR markers and the methods of advanced backcross QTL (AB-QTL) analysis and selective introgression. Many QTLs affecting four yield traits under salt stress and non-stress conditions were identiifed, most (>90%) of which were clustered in 13 genomic regions of the rice genome and involved in complex epistasis. Most QTLs affecting yield traits were differentially expressed under salt stress and non-stress conditions. Our results suggested that genetics complementarily provides an adequate explanation for the hidden genetic diversity for ST observed in both IL populations. Some promising Huanghuazhan (HHZ) ILs with favorable donor alleles at multiple QTLs and signiifcantly improved yield traits under salt stress and non-stress conditions were identiifed, providing excellent materials and relevant genetic information for improving rice ST by marker-assisted selection (MAS) or genome selection.

  5. Uptake of 14C-carbofuran from rice plants by brown planthopper (nilaparvata lugens stal) and green leafhopper (Nephotettix virencence)

    International Nuclear Information System (INIS)

    Sumatra, M.; Anwar, E.; Kuswadi, A.N.; Soekarna, D.

    1988-01-01

    An experiment was carried out to determine the amount of 14-C-carbofuran taken up by brown planthopper (BPH) and green leafhopper (GLH) from ride plants containing 14-C-carbofuran. The roots of 30 days old rice plants were immersed in Kimura B solution containing carbofuran (0.6ug/ml) with activity of 18600 pCi/ml. After 3 days, 20 BPH and 20 GLH released onto the rice stems and leaves. The mortalities of BPH and GLH were similar after 24 and 48 hours of the release. The average radioactivity found in living GLH was 3.5 times of those found in living GLH was 3.5 times of those found in living BPH. And in dead GLH was 3.2 times on those in dead BPH. Radioactivity in rice leaves was 3.5 times of those in stems. This layer chromatograph of extracts of Kimura B solution, stems, and leaves showed that small amounts of carbofuran had degraded to substances like 3-OH-carbofuran and 3-keto-carbofuran. The percentage of radioactivity found as carbofuran decreased with time, while the amount of 3-ket-carbofuran increased. (authors). 6 refs, 2 figs, 6 tab

  6. Jasmonic acid-mediated defense suppresses brassinosteroid-mediated susceptibility to Rice black streaked dwarf virus infection in rice.

    Science.gov (United States)

    He, Yuqing; Zhang, Hehong; Sun, Zongtao; Li, Junmin; Hong, Gaojie; Zhu, Qisong; Zhou, Xuebiao; MacFarlane, Stuart; Yan, Fei; Chen, Jianping

    2017-04-01

    Plant hormones play a vital role in plant immune responses. However, in contrast to the relative wealth of information on hormone-mediated immunity in dicot plants, little information is available on monocot-virus defense systems. We used a high-throughput-sequencing approach to compare the global gene expression of Rice black-streaked dwarf virus (RBSDV)-infected rice plants with that of healthy plants. Exogenous hormone applications and transgenic rice were used to test RBSDV infectivity and pathogenicity. Our results revealed that the jasmonic acid (JA) pathway was induced while the brassinosteroid (BR) pathway was suppressed in infected plants. Foliar application of methyl jasmonate (MeJA) or brassinazole (BRZ) resulted in a significant reduction in RBSDV incidence, while epibrassinolide (BL) treatment increased RBSDV infection. Infection studies using coi1-13 and Go mutants demonstrated JA-mediated resistance and BR-mediated susceptibility to RBSDV infection. A mixture of MeJA and BL treatment resulted in a significant reduction in RBSDV infection compared with a single BL treatment. MeJA application efficiently suppressed the expression of BR pathway genes, and this inhibition depended on the JA coreceptor OsCOI1. Collectively, our results reveal that JA-mediated defense can suppress the BR-mediated susceptibility to RBSDV infection. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

  7. Radioactive probes as diagnostic tools for rice tungro viruses

    International Nuclear Information System (INIS)

    Azzam, O.; Arboleda, M.; Reyes. J. de los

    1996-01-01

    Rice tungro bacilliform (RTBV) and rice tungro spherical viruses (RTSV) are the two viral components responsible for rice tungro disease which has seriously affected the irrigated rice ecosystem in Southeast Asia for the last 30 years. RTBV has an 8 Kb double-stranded DNA circular genome, and it is primarily responsible for induction of symptoms in infected plants. RTSV has a 12 kb single-stranded RNA genome. It does not induce any apparent symptoms in the infected plant, and it is transmitted by greenleafhopper. RTBV depends upon RTSV for its own transmission. The two viruses are limited to the vascular tissue of the rice plant and are present at a low titer. Most of the detection methods used for the identification of these viruses have relied on the virus protein properties and therefore, early detection of the virus activity was not possible. We were interested in evaluating tissue printing, dot blot, and southern techniques for early detection of virus nucleic acids in rice plant using radioactive and non radioactive probes. 32 P-labeled T7 or SP6 RNA polymerase transcripts complementary to the RTBV genome and RTSV coat protein genes were used as probes of the positive stand of both viruses. For nonradioactive probes, RTBV DNA genome was labeled using the ECL detection kit (Amersham). Preliminary results show that viral nucleic acids of RTBV and RTSV could be detected using both labelling systems. Non radioactive probes were comparable in their sensitivity to the radioactive probes. Less than 100 pg of viral DNA was detected in the dot-blot assays. More data will be presented to compare the efficiency and reliability of these two techniques in detecting early virus activity in the rice plant. (author)

  8. The use of induced mutation combined with crossing in high quality rice breeding

    International Nuclear Information System (INIS)

    Do Huu At; Bui Huy Thuy; Nguyen Van Bich; Tran Duy Quy; Nguyen Minh Cong

    2001-01-01

    The high quality rice varieties: Tam thom mutant rice Var., DT17 rice Var, DT21 glutinous rice Var were formed by induced mutation combined with crossing. Tam thom mutant rice Var. lost photosensitivity, could be planted 2 crops/year. DT17 rice Var with high yielding capacity, suitable for growth on lowland in summer crop, is replacing step-by-step Moctuyen rice Var. in North Vietnam. DT21 glutinous rice Var. could be planted 2 crops/year and had short growth duration, average yield was 4.0-4.5 tons/ha. These three ones had good quality, soft and scent cooked rice, suitable for customers and export requirements. Tam thom mutant rice Var. DT17 rice Var., DT21 and glutinous rice Var. were adopted for regional production by Ministry of Agriculture and Rural Development and allowed to be in trial production. (author)

  9. The use of induced mutation combined with crossing in high quality rice breeding

    Energy Technology Data Exchange (ETDEWEB)

    Do Huu At; Bui Huy Thuy; Nguyen Van Bich; Tran Duy Quy [Agricultural Genetics Institute, Division of Genetics and Hybrid Rice Technology, Hanoi (Viet Nam); Nguyen Minh Cong [Hanoi No. 1 Teacher Training Univ., Department of Genetics (Viet Nam)

    2001-03-01

    The high quality rice varieties: Tam thom mutant rice Var., DT17 rice Var, DT21 glutinous rice Var were formed by induced mutation combined with crossing. Tam thom mutant rice Var. lost photosensitivity, could be planted 2 crops/year. DT17 rice Var with high yielding capacity, suitable for growth on lowland in summer crop, is replacing step-by-step Moctuyen rice Var. in North Vietnam. DT21 glutinous rice Var. could be planted 2 crops/year and had short growth duration, average yield was 4.0-4.5 tons/ha. These three ones had good quality, soft and scent cooked rice, suitable for customers and export requirements. Tam thom mutant rice Var. DT17 rice Var., DT21 and glutinous rice Var. were adopted for regional production by Ministry of Agriculture and Rural Development and allowed to be in trial production. (author)

  10. Cadmium Accumulation and Its Toxicity in Brittle Culm 1 (bc1, a Fragile Rice Mutant

    Directory of Open Access Journals (Sweden)

    Guo-sheng SHAO

    2007-09-01

    Full Text Available Cadmium (Cd accumulation and toxicity in rice plants were characterized and identified by using brittle culm 1 (bc1, a fragile rice mutant and its wild type (Shuangkezao, an indica rice as materials by hydroponics. The low Cd level didn't obviously affect the growth parameters in both rice genotypes, but under high Cd levels (1.0 and 5.0 μmol/L, the growth of both rice plants were substantially inhibited. Moreover, bc1 tended to suffer more seriously from Cd toxicity than Shuangkezao. Cd accumulation in both rice plants increased with the increase of Cd levels. There was a significant difference in Cd accumulation between the two rice genotypes with constantly higher Cd concentration in bc1, which also accumulated more Cd at 0, 0.1, and 1.0 μmol/L Cd levels. The same case was found in the two rice plants grown on Cd-contaminated soil. This suggested that cell wall might play an important role in Cd accumulation in rice plants by the physiological mechanisms. The malondialdehyde (MDA content, superoxide dismutase (SOD and peroxidase (POD activities in rice plants were affected differently under Cd treatments, and which implied that POD might play the main role in detoxifying active oxygen free radical. A significant difference in antioxidative system between the two rice genotypes was found with constantly higher MDA content, SOD and POD activities in bc1. In summary, bc1 accumulated more Cd and appeared to be more sensitive to Cd stress compared with its wild type.

  11. Australian wild rice reveals pre-domestication origin of polymorphism deserts in rice genome.

    Science.gov (United States)

    Krishnan S, Gopala; Waters, Daniel L E; Henry, Robert J

    2014-01-01

    Rice is a major source of human food with a predominantly Asian production base. Domestication involved selection of traits that are desirable for agriculture and to human consumers. Wild relatives of crop plants are a source of useful variation which is of immense value for crop improvement. Australian wild rices have been isolated from the impacts of domestication in Asia and represents a source of novel diversity for global rice improvement. Oryza rufipogon is a perennial wild progenitor of cultivated rice. Oryza meridionalis is a related annual species in Australia. We have examined the sequence of the genomes of AA genome wild rices from Australia that are close relatives of cultivated rice through whole genome re-sequencing. Assembly of the resequencing data to the O. sativa ssp. japonica cv. Nipponbare shows that Australian wild rices possess 2.5 times more single nucleotide polymorphisms than in the Asian wild rice and cultivated O. sativa ssp. indica. Analysis of the genome of domesticated rice reveals regions of low diversity that show very little variation (polymorphism deserts). Both the perennial and annual wild rice from Australia show a high degree of conservation of sequence with that found in cultivated rice in the same 4.58 Mbp region on chromosome 5, which suggests that some of the 'polymorphism deserts' in this and other parts of the rice genome may have originated prior to domestication due to natural selection. Analysis of genes in the 'polymorphism deserts' indicates that this selection may have been due to biotic or abiotic stress in the environment of early rice relatives. Despite having closely related sequences in these genome regions, the Australian wild populations represent an invaluable source of diversity supporting rice food security.

  12. Australian wild rice reveals pre-domestication origin of polymorphism deserts in rice genome.

    Directory of Open Access Journals (Sweden)

    Gopala Krishnan S

    Full Text Available BACKGROUND: Rice is a major source of human food with a predominantly Asian production base. Domestication involved selection of traits that are desirable for agriculture and to human consumers. Wild relatives of crop plants are a source of useful variation which is of immense value for crop improvement. Australian wild rices have been isolated from the impacts of domestication in Asia and represents a source of novel diversity for global rice improvement. Oryza rufipogon is a perennial wild progenitor of cultivated rice. Oryza meridionalis is a related annual species in Australia. RESULTS: We have examined the sequence of the genomes of AA genome wild rices from Australia that are close relatives of cultivated rice through whole genome re-sequencing. Assembly of the resequencing data to the O. sativa ssp. japonica cv. Nipponbare shows that Australian wild rices possess 2.5 times more single nucleotide polymorphisms than in the Asian wild rice and cultivated O. sativa ssp. indica. Analysis of the genome of domesticated rice reveals regions of low diversity that show very little variation (polymorphism deserts. Both the perennial and annual wild rice from Australia show a high degree of conservation of sequence with that found in cultivated rice in the same 4.58 Mbp region on chromosome 5, which suggests that some of the 'polymorphism deserts' in this and other parts of the rice genome may have originated prior to domestication due to natural selection. CONCLUSIONS: Analysis of genes in the 'polymorphism deserts' indicates that this selection may have been due to biotic or abiotic stress in the environment of early rice relatives. Despite having closely related sequences in these genome regions, the Australian wild populations represent an invaluable source of diversity supporting rice food security.

  13. Characterization of N2-fixing plant growth promoting endophytic and epiphytic bacterial community of Indian cultivated and wild rice (Oryza spp.) genotypes.

    Science.gov (United States)

    Banik, Avishek; Mukhopadhaya, Subhra Kanti; Dangar, Tushar Kanti

    2016-03-01

    The diversity of endophytic and epiphytic diazotrophs in different parts of rice plants has specificity to the niche (i.e. leaf, stem and root) of different genotypes and nutrient availability of the organ. Inoculation of the indigenous, polyvalent diazotrophs can facilitate and sustain production of non-leguminous crops like rice. Therefore, N2-fixing plant growth promoting bacteria (PGPB) were isolated from different parts of three Indian cultivated [Oryza sativa L. var. Sabita (semi deep/deep water)/Swarna (rain fed shallow lowland)/Swarna-Sub1(submergence tolerant)] and a wild (O. eichingeri) rice genotypes which respond differentially to nitrogenous fertilizers. Thirty-five isolates from four rice genotypes were categorized based on acetylene reduction assay on nitrogenase activity, biochemical tests, BIOLOG and 16S rRNA gene sequencing. The bacteria produced 9.36-155.83 nmole C2H4 mg(-1) dry bacteria h(-1) and among them nitrogenase activity of 11 potent isolates was complemented by nifH-sequence analysis. Phylogenetic analysis based on 16S rDNA sequencing divided them into five groups (shared 95-100 % sequence homology with type strains) belonging to five classes-alpha (Ancylobacter, Azorhizobium, Azospirillum, Rhizobium, Bradyrhizobium, Sinorhizobium, Novosphingobium, spp.), beta (Burkholderia sp.), gamma (Acinetobacter, Aeromonas, Azotobacter, Enterobacter, Klebsiella, Pantoea, Pseudomonas, Stenotrophomonas spp.) Proteobacteria, Bacilli (Bacillus, Paenibacillus spp.) and Actinobacteria (Microbacterium sp.). Besides, all bacterial strains possessed the intrinsic PGP traits of like indole (0.44-7.4 µg ml(-1)), ammonia (0.18-6 mmol ml(-1)), nitrite (0.01-3.4 mol ml(-1)), and siderophore (from 0.16-0.57 μmol ml(-1)) production. Inoculation of rice (cv. Swarna) seedlings with selected isolates had a positive impact on plant growth parameters like shoot and root elongation which was correlated with in vitro PGP attributes. The results indicated that the

  14. Induction of rice mutations by high hydrostatic pressure.

    Science.gov (United States)

    Zhang, Wei; Liu, Xuncheng; Zheng, Feng; Zeng, Songjun; Wu, Kunlin; da Silva, Jaime A Teixeira; Duan, Jun

    2013-09-01

    High hydrostatic pressure (HHP) is an extreme thermo-physical factor that affects the synthesis of DNA, RNA and proteins and induces mutagenesis in microorganisms. Our previous studies showed that exposure to 25-100 MPa HHP for 12 h retarded the germination and affected the viability of rice (Oryza sativa L.) seeds, increased the tolerance of rice plants to cold stress and altered gene expression patterns in germinating rice seeds. However, the mutagenic effect of HHP on rice remains unknown. In this study, exposure to 25, 50, 75 or 100 MPa for 12 h HHP could efficiently induce variation in rice plants. Furthermore, presoaking time and HHP strength during HHP treatment affected the efficiency of mutation. In addition, the Comet assay revealed that exposure to 25-100 MPa HHP for 12 h induced DNA strand breakage in germinating seeds and may have been the source of mutations. Our results suggest that HHP is a promising physical mutagen in rice breeding. Copyright © 2013 Elsevier Masson SAS. All rights reserved.

  15. Soil to rice transfer factors for 226Ra, 228Ra, 210Pb, 40K and 137Cs: a study on rice grown in India

    International Nuclear Information System (INIS)

    Karunakara, N.; Rao, Chetan; Ujwal, P.; Yashodhara, I.; Kumara, Sudeep; Ravi, P.M.

    2013-01-01

    India is the second largest producer of rice (Oryza sativa L.) in the world and rice is an essential component of the diet for a majority of the population in India. However, detailed studies aimed at the evaluation of radionuclide transfer factors (F v ) for the rice grown in India are almost non-existent. This paper presents the soil to rice transfer factors for natural ( 226 Ra, 228 Ra, 40 K, and 210 Pb) and artificial ( 137 Cs) radionuclides for rice grown in natural field conditions on the West Coast of India. A rice field was developed very close to the Kaiga nuclear power plant and the water required for this field was drawn from the cooling water discharge canal of the power plant. For a comparative study of the radionuclide transfer factors, rice samples were also collected from the rice fields of nearby villages. The study showed that the 226 Ra and 228 Ra activity concentrations were below detection levels in different organs of the rice plant. The soil to un-hulled rice grain 40 K transfer factor varied in the range of 6.5 × 10 −1 to 2.9 with a mean of 0.15 × 10 1 , and of 210 Pb varied in the range of −2 to 8.1 × 10 −1 with a mean of 1.4 × 10 −1 , and of 137 Cs varied in the range of 6.6 × 10 −2 to 3.4 × 10 −1 with a mean of 2.1 × 10 −1 . The mean values of un-hulled grain to white rice processing retention factors (F r ) were 0.12 for 40 K, 0.03 for 210 Pb, and 0.14 for 137 Cs. Using these processing retention factors, the soil to white rice transfer factors were estimated and these were found to have mean values of 1.8 × 10 −1 , 4.2 × 10 −3 , and 3.0 × 10 −2 for 40 K, 210 Pb, and 137 Cs, respectively. The study has shown that the transfer of 40 K was higher for above the ground organs than for the root, but 210 Pb and 137 Cs were retained in the root and their transfer to above the ground organs of the rice plant is significantly lower. -- Highlights: ► Soil to rice (Oryza sativa L.) transfer factors for radionuclides

  16. Modified Application of Nitrogen Fertilizer for Increasing Rice Variety Tolerance toward Submergence Stress

    Directory of Open Access Journals (Sweden)

    Gribaldi Gribaldi

    2017-01-01

    Full Text Available This research was conducted from July to October 2015, using Randomized Block Design with two treatment factors and three replications for each treatment. The first factor was rice varieties (V: V1 = IR 64; V2 = Inpara 5. The second factor was fertilizer (N: N0: without submergence, all N fertilizer was given during planting; N1: all N fertilizer dose was given during planting; and N2: 1/2 dose of N fertilizer was given during planting; the rest was given at 42 days after planting. The submergence was during 7–14 days after planting; N3 = the entire dose of N fertilizer that was given during planting, N4 = 1/2 the dose of N fertilizer that was given during planting, and the rest was given at 42 days after planting. The submergence was during 7–14 and 28–35 days after planting. The results showed that the management of nitrogen fertilizer application had effect on rice growth and production which experienced dirty water submergence stress; the application of 1/2 dose of N fertilizer given during planting had the best effect on rice growth and production; the longer the submergence period for rice variety, the higher the effect on rice growth and production.

  17. MicroRNAs responding to southern rice black-streaked dwarf virus infection and their target genes associated with symptom development in rice.

    Science.gov (United States)

    Xu, Donglin; Mou, Guiping; Wang, Kang; Zhou, Guohui

    2014-09-22

    Southern rice black-streaked dwarf virus (SRBSDV) is a recently emerged rice virus that has spread across Asia. This devastating virus causes rice plants to produce a variety of symptoms during different growth stages. MicroRNAs (miRNAs) comprise a large group of 21-24-nt RNA molecules that are important regulators of plant development processes and stress responses. In this study, we used microarray profiling to investigate rice miRNAs responding to SRBSDV infection at 3, 9, 15, and 20 days post-inoculation (dpi). Expression levels of 56 miRNAs were altered in SRBSDV-infected rice plants, with these changes classified into eight different regulation patterns according to their temporal expression dynamics. Fourteen miRNAs belonging to six families (miR164, R396, R530, R1846, R1858, and R2097) were significantly regulated at 20 dpi. We used RT-qPCR to search for expression level correlations between members of these families and their putative targets at 3, 9, and 15 dpi. Some members of the miR164, R396, R530, and R1846 families were found to be positively or negatively correlated with their respective targets during 3-15 days after SRBSDV infection, whereas in more cases the rice miRNAs were not in correlation with their targets along the post-inoculation period, suggesting that some additional factors may be involved in rice miRNA-target interactions. The reported functions of rice genes targeted by the miR164, R396, R530, R1846, and R1858 families indicated that these genes are associated with symptom development. These results provide insights into miRNA-mediated SRBSDV-rice interactions. Copyright © 2014 Elsevier B.V. All rights reserved.

  18. Rice DB: an Oryza Information Portal linking annotation, subcellular location, function, expression, regulation, and evolutionary information for rice and Arabidopsis.

    Science.gov (United States)

    Narsai, Reena; Devenish, James; Castleden, Ian; Narsai, Kabir; Xu, Lin; Shou, Huixia; Whelan, James

    2013-12-01

    Omics research in Oryza sativa (rice) relies on the use of multiple databases to obtain different types of information to define gene function. We present Rice DB, an Oryza information portal that is a functional genomics database, linking gene loci to comprehensive annotations, expression data and the subcellular location of encoded proteins. Rice DB has been designed to integrate the direct comparison of rice with Arabidopsis (Arabidopsis thaliana), based on orthology or 'expressology', thus using and combining available information from two pre-eminent plant models. To establish Rice DB, gene identifiers (more than 40 types) and annotations from a variety of sources were compiled, functional information based on large-scale and individual studies was manually collated, hundreds of microarrays were analysed to generate expression annotations, and the occurrences of potential functional regulatory motifs in promoter regions were calculated. A range of computational subcellular localization predictions were also run for all putative proteins encoded in the rice genome, and experimentally confirmed protein localizations have been collated, curated and linked to functional studies in rice. A single search box allows anything from gene identifiers (for rice and/or Arabidopsis), motif sequences, subcellular location, to keyword searches to be entered, with the capability of Boolean searches (such as AND/OR). To demonstrate the utility of Rice DB, several examples are presented including a rice mitochondrial proteome, which draws on a variety of sources for subcellular location data within Rice DB. Comparisons of subcellular location, functional annotations, as well as transcript expression in parallel with Arabidopsis reveals examples of conservation between rice and Arabidopsis, using Rice DB (http://ricedb.plantenergy.uwa.edu.au). © 2013 The Authors The Plant Journal © 2013 John Wiley & Sons Ltd.

  19. Studies on the Ecological Adaptability of Growing Rice with Floating Bed on the Dilute Biogas Slurry

    Science.gov (United States)

    Du, Qi; Cheng, Bowen; Liao, Zhiqi; Sun, Chengcheng

    2016-01-01

    This study aimed to explore the ecological adaptability and the possibility of growing rice with floating bed on the dilute biogas slurry. The results of the experiments show that the growth stage, rice plant height, and rice yield and quality were significantly affected by multiple dilutions; rice plants cultivated with 45 multiple dilutions had better ecological adaptability than others. In the 45 multiple dilutions' group, the yield of rice was 13.3 g/bucket (8 rice plants), milled rice rate was 63.1%, and the content of crude protein in the rice was 6.3%. The concentrations of heavy metals in the rice cultivated with 30 multiple dilutions' slurry, such as total lead, cadmium, mercury, chromium, and arsenic, were all below the national standard. The study shows that it is possible and safe to cultivate rice plants with no soil but diluted biogas slurry. In the experiments, the yield, milled rice rate, and crude protein of the rice cultivated with slurry were not as much as those of rice cultivated with regular way in soil. This study provides the basic theoretical support for the development of biogas projects and the potential achievement of organic farming in special agricultural facilities and circular economy. PMID:27882324

  20. Studies on the Ecological Adaptability of Growing Rice with Floating Bed on the Dilute Biogas Slurry.

    Science.gov (United States)

    Kang, Qun; Li, Rui; Du, Qi; Cheng, Bowen; Liao, Zhiqi; Sun, Chengcheng; Li, Zhaohua

    2016-01-01

    This study aimed to explore the ecological adaptability and the possibility of growing rice with floating bed on the dilute biogas slurry. The results of the experiments show that the growth stage, rice plant height, and rice yield and quality were significantly affected by multiple dilutions; rice plants cultivated with 45 multiple dilutions had better ecological adaptability than others. In the 45 multiple dilutions' group, the yield of rice was 13.3 g/bucket (8 rice plants), milled rice rate was 63.1%, and the content of crude protein in the rice was 6.3%. The concentrations of heavy metals in the rice cultivated with 30 multiple dilutions' slurry, such as total lead, cadmium, mercury, chromium, and arsenic, were all below the national standard. The study shows that it is possible and safe to cultivate rice plants with no soil but diluted biogas slurry. In the experiments, the yield, milled rice rate, and crude protein of the rice cultivated with slurry were not as much as those of rice cultivated with regular way in soil. This study provides the basic theoretical support for the development of biogas projects and the potential achievement of organic farming in special agricultural facilities and circular economy.

  1. Rice-straw mulch reduces the green peach aphid, Myzus persicae (Hemiptera: Aphididae) populations on kale, Brassica oleracea var. acephala (Brassicaceae) plants.

    Science.gov (United States)

    Silva-Filho, Reinildes; Santos, Ricardo Henrique Silva; Tavares, Wagner de Souza; Leite, Germano Leão Demolin; Wilcken, Carlos Frederico; Serrão, José Eduardo; Zanuncio, José Cola

    2014-01-01

    Organic mulches, like peel and rice-straw, besides other materials affect the UV and temperature, which cause a reduction in the aphid arrival. The aim was to evaluate the effect of covering the soil with straw on the populations of the green peach aphid, Myzus persicae on the kale, Brassica oleracea var. acephala plants. The first experiment evaluated the direct effect of the rice-straw mulch and the second its indirect effect on aphid immigration, testing the plant characteristics that could lead to the landing preference of this insect. The third experiment evaluated the direct effect of the mulch on the aphid population. In the second and third experiments, four plants, each in a 14 L polyethylene pot with holes at the bottom, were used in areas with and without soil mulching. These pots were changed between areas, after seven days, to evaluate the effects of this change on the arrival of the winged aphids to the plants. Each plant was covered with anti-aphid gauze and inoculated with one winged M. persicae. Winged and apterous adults of this insect were counted per plant after 15 days. The temperature increased in the mulched plots to a maximum of 21-36°C and to 18-32°C in the plots with or without soil covering, respectively. Plant growth reduced the numbers of the winged aphids landing before and after they were moved to the bare soil plots. The nutrient content was similar in plants in both the mulched and no mulched plots. The population growth of M. persicae was higher in the control than in the mulched plots. This was partially due to temperatures close to 30°C in these plots and changes in the plant physiology. The soil mulching with rice-straw decreased the M. persicae landing, increased the plot temperatures and improved the vegetative growth of the kale plants.

  2. Rice-straw mulch reduces the green peach aphid, Myzus persicae (Hemiptera: Aphididae populations on kale, Brassica oleracea var. acephala (Brassicaceae plants.

    Directory of Open Access Journals (Sweden)

    Reinildes Silva-Filho

    Full Text Available Organic mulches, like peel and rice-straw, besides other materials affect the UV and temperature, which cause a reduction in the aphid arrival. The aim was to evaluate the effect of covering the soil with straw on the populations of the green peach aphid, Myzus persicae on the kale, Brassica oleracea var. acephala plants. The first experiment evaluated the direct effect of the rice-straw mulch and the second its indirect effect on aphid immigration, testing the plant characteristics that could lead to the landing preference of this insect. The third experiment evaluated the direct effect of the mulch on the aphid population. In the second and third experiments, four plants, each in a 14 L polyethylene pot with holes at the bottom, were used in areas with and without soil mulching. These pots were changed between areas, after seven days, to evaluate the effects of this change on the arrival of the winged aphids to the plants. Each plant was covered with anti-aphid gauze and inoculated with one winged M. persicae. Winged and apterous adults of this insect were counted per plant after 15 days. The temperature increased in the mulched plots to a maximum of 21-36°C and to 18-32°C in the plots with or without soil covering, respectively. Plant growth reduced the numbers of the winged aphids landing before and after they were moved to the bare soil plots. The nutrient content was similar in plants in both the mulched and no mulched plots. The population growth of M. persicae was higher in the control than in the mulched plots. This was partially due to temperatures close to 30°C in these plots and changes in the plant physiology. The soil mulching with rice-straw decreased the M. persicae landing, increased the plot temperatures and improved the vegetative growth of the kale plants.

  3. ANALYSIS ON THE DYNAMICS OF SPATIAL DISTRIBUTION PATTERN OF MIXED SPIDER POPULATION IN RICE FIELD

    Institute of Scientific and Technical Information of China (English)

    ZhiWang; Zhe-mingYuan; Da-xiangSong; Ming-shengZhu

    2004-01-01

    The results make it clear that there are total 11 families, 29 genera and 43 species of spiders in the rice field of Dong Fang Hong Farm. Among them, there are 8 families, 19 genera and 28 species in the early rice field, and 10 families, 27 genera and 36 species in the late rice field. The spatial distribution pattern of mixed spider populations in rice fields was different during different development stages of rice plant. During the prophase, metaphase and anaphase of early rice plant development, the spatial distribution pattern of mixed spider populations was aggregative, random and aggregative respectively. During the prophase, metaphase and anaphase of late rice plant development, the spatial distribution pattern was uniform, aggregative and uniform respectively.

  4. Rice status and microwave characteristics: Analysis of rice paddy fields at Kojima Bay [Okayama, Japan] using multi-frequency and polarimetric Pi-SAR radar data images

    International Nuclear Information System (INIS)

    Ishitsuka, N.; Saito, G.; Ouchi, K.; Davidson, G.; Mohri, K.; Uratsuka, S.

    2003-01-01

    Abstract South-east Asia has a rainy-season at the crop growing period, and it is difficult to observe agricultural land in this season using optical remote sensing. Synthetic Aperture Radar (SAR) can observe the earth's surface without being influenced by of clouds. However, it is less useful for observing agricultural land, because satellite SAR has only one data band. Recently, SAR is able to provide multi band and multi polarimetric data. Pi-SAR, an airborne SAR developed by NASDA and CRL, can provide L and X bands and fully polarimetric data. Rice is the main crop in Asia, and we studied the characteristic microwave scatter on rice paddy fields using Pi-SAR data. Our study area was the rice paddy fields in Kojima reclaimed land in Japan. We had two fully polarimetric data sets from 13 July 1999 and 4 October 2000. First, we processed the color polarimetric composite image. Next we calibrated the phase of each polarimetric data using river area by the Kimura method. After that we performed decomposition analysis and drew polarimetric signatures for understanding the status of rice paddy fields. At the rice planting period, rice paddy fields are filled with water and rice plants are very small. The SAR microwave scatters on water surfaces like a mirror, called 'mirror (or specular) reflection'. This phenomenon makes backscatter a small value at the water-covered area. The image from July is about one month after trans-planting and rice plants are 20-40 cm in height. X-band microwave scatters on the rice surface, but L-band microwave passes through rice bodies and shows mirror refraction on water surfaces. Some strong backscatter occur on rice paddy fields especially VV polarization because of bragg scattering. The fields where bragg scattering returns strong VV scatter because the space between rice stems cause resonation in the L-band wavelength. We can easily understand bragg scatter by using polarimetric data. Using the image from October at

  5. Gnotobiotic cultures of rice plants up to ear stage in the absence of combined nitrogen source but in the presence of free living nitrogen fixing bacteria Azotobacter vinelandii and Rhodopseudomonas capsulata

    International Nuclear Information System (INIS)

    Maudinas, B.; Chemardin, M.; Yovanovitch, E.; Gadal, P.

    1981-01-01

    An all glass tight growth chamber, entirely sterilizable, has been constructed to carry out axenic and gnotobiotic cultures of rice plants (Oryza sativa L.). When grown in liquid medium and in the absence of combined nitrogen but in the presence of the diazotrophs Azotobacter vinelandii and Rhodopseudomonas capsulata, rice plants exhibited a complete biological cycle from germination up to ear stage, during a period of time similiar to the one encountered in French paddy soil of Camargue. In one experiment, mannitol was given to rice culture medium together with Azotobacter vinelandii and Rhodopseudomonas capsulata. In another experiment, mannitol was not given together with Rhodopseudomonas, and still positive nitrogen gain was obtained, although it was less than culture with mannitol. When 15 N labeled cells of Rhodopseudomonas were added in rice culture medium, 15 N was partly transferred to rice plant. Among the nitrogen substances excreted from the bacteria in the rhizosphere medium, large organic molecules were shown to be the most abundant in our experimental conditions. Moreover, the concentration of free ammonia or aminoacids present in the rice rhizosphere were always compatible with a bacterial nitrogenase activity. (orig.)

  6. Response Of Lowland Rice To Soil Compaction

    International Nuclear Information System (INIS)

    Idawati; Haryanto

    2000-01-01

    Soil compaction, as a new tillage practice for paddy soil, is to substitute pudding in order to reduce land preparation cost. To study response of lowland rice to soil compaction, a pot experiment has been conducted which took place in the greenhouse of P3TIR-BATAN. Soil for experiment was taken from pusakanegara. Two factors (degree of soil compaction and rice variety) were combined. Degree of compaction was split into 3 levels (DI = normal; D215% more compact than normal; 30 % more compact than normal), and rice variety into 2 levels (IR64 and Atomita IV). KH 2 32 PO 4 solution was injected into the soil surrounding rice clump to test the root activity at blooming stage of rice plant. Data resulted from this experiment is presented together with additional data from some other experiments of fertilization in the research s erie to study soil compaction. Some information's from experiment results are as following. Both rice varieties tested gave the same response to soil compaction. Root activity, according to data of 32 P absorbed by plant, was not harmed by soil compaction at the degree tested in the experiment. This prediction is supported by the growth by rice observed at generative growth stage, in pot experiment as well as in field experiment, which showed that soil compaction tested did not decrease rice yield but in opposite in tended to increase the yield. In practising soil compaction in land preparation, fertilizers should be applied by deep placement to have higher increasing is rice yield

  7. Regulation of cation transporter genes by the arbuscular mycorrhizal symbiosis in rice plants subjected to salinity suggests improved salt tolerance due to reduced Na(+) root-to-shoot distribution.

    Science.gov (United States)

    Porcel, Rosa; Aroca, Ricardo; Azcon, Rosario; Ruiz-Lozano, Juan Manuel

    2016-10-01

    Rice is a salt-sensitive crop whose productivity is strongly reduced by salinity around the world. Plants growing in saline soils are subjected to the toxicity of specific ions such as sodium, which damage cell organelles and disrupt metabolism. Plants have evolved biochemical and molecular mechanisms to cope with the negative effects of salinity. These include the regulation of genes with a role in the uptake, transport or compartmentation of Na(+) and/or K(+). Studies have shown that the arbuscular mycorrhizal (AM) symbiosis alleviates salt stress in several host plant species. However, despite the abundant literature showing mitigation of ionic imbalance by the AM symbiosis, the molecular mechanisms involved are barely explored. The objective of this study was to elucidate the effects of the AM symbiosis on the expression of several well-known rice transporters involved in Na(+)/K(+) homeostasis and measure Na(+) and K(+) contents and their ratios in different plant tissues. Results showed that OsNHX3, OsSOS1, OsHKT2;1 and OsHKT1;5 genes were considerably upregulated in AM plants under saline conditions as compared to non-AM plants. Results suggest that the AM symbiosis favours Na(+) extrusion from the cytoplasm, its sequestration into the vacuole, the unloading of Na(+) from the xylem and its recirculation from photosynthetic organs to roots. As a result, there is a decrease of Na(+) root-to-shoot distribution and an increase of Na(+) accumulation in rice roots which seems to enhance the plant tolerance to salinity and allows AM rice plants to maintain their growing processes under salt conditions.

  8. Effective Suppression of Methane Emission by 2-Bromoethanesulfonate during Rice Cultivation.

    Directory of Open Access Journals (Sweden)

    Tatoba R Waghmode

    Full Text Available 2-bromoethanesulfonate (BES is a structural analogue of coenzyme M (Co-M and potent inhibitor of methanogenesis. Several studies confirmed, BES can inhibit CH4 prodcution in rice soil, but the suppressing effectiveness of BES application on CH4 emission under rice cultivation has not been studied. In this pot experiment, different levels of BES (0, 20, 40 and 80 mg kg-1 were applied to study its effect on CH4 emission and plant growth during rice cultivation. Application of BES effectively suppressed CH4 emission when compared with control soil during rice cultivation. The CH4 emission rates were significantly (P<0.001 decreased by BES application possibly due to significant (P<0.001 reduction of methnaogenic biomarkers like Co-M concentration and mcrA gene copy number (i.e. methanogenic abunadance. BES significantly (P<0.001 reduced methanogen activity, while it did not affect soil dehydrogenase activity during rice cultivation. A rice plant growth and yield parameters were not affected by BES application. The maximum CH4 reduction (49% reduction over control was found at 80 mg kg-1 BES application during rice cultivation. It is, therefore, concluded that BES could be a suitable soil amendment for reducing CH4 emission without affecting rice plant growth and productivity during rice cultivation.

  9. The Commonly Used Bactericide Bismerthiazol Promotes Rice Defenses against Herbivores

    Directory of Open Access Journals (Sweden)

    Pengyong Zhou

    2018-04-01

    Full Text Available Chemical elicitors that enhance plant resistance to pathogens have been extensively studied, however, chemical elicitors that induce plant defenses against insect pests have received little attention. Here, we found that the exogenous application of a commonly used bactericide, bismerthiazol, on rice induced the biosynthesis of constitutive and/or elicited jasmonic acid (JA, jasmonoyl-isoleucine conjugate (JA-Ile, ethylene and H2O2 but not salicylic acid. These activated signaling pathways altered the volatile profile of rice plants. White-backed planthopper (WBPH, Sogatella furcifera nymphs and gravid females showed a preference for feeding and/or oviposition on control plants: survival rates were better and more eggs were laid than on bismerthiazol-treated plants. Moreover, bismerthiazol treatment also increased both the parasitism rate of WBPH eggs laid on plants in the field by Anagrus nilaparvatae, and also the resistance of rice to the brown planthopper (BPH Nilaparvata lugens and the striped stem borer (SSB Chilo suppressalis. These findings suggest that the bactericide bismerthiazol can induce the direct and/or indirect resistance of rice to multiple insect pests, and so can be used as a broad-spectrum chemical elicitor.

  10. Role of LOX3 Gene in Alleviating Adverse Effects of Drought and Pathogens in Rice

    Institute of Scientific and Technical Information of China (English)

    LIU Nan-nan; JIANG Ling; ZHANG Wen-wei; LIU Ling-long; ZHAI Hu-qu; WAN Jian-min

    2008-01-01

    Lipoxygenase 3 (LOX3) is a major component of the LOX isozymes in mature rice seeds. To investigate the role of LOX3 gene under stresses, a plant expression vector containing antisense cDNA of LOX3 was constructed. Rice varieties Wuyunjing 7 and Kasalath were transformed by the Agrobacterium-mediated method and transgenic rice plants were generated. PCR and Southern blot results showed that the antisense LOX3 gene was integrated into the rice genome. Analyses of embryo LOX3 deletion and semi-quantitative RT-PCR confirmed the antisense suppression of LOX3 gene in transgenic plants. The T2 antisense plants of LOX3 were sensitive to drought stress, rice blast and bacterial blight compared with non-transgenic plants. These results suggest that the LOX3 gene might function in response to stresses.

  11. Jasmonate induction of the monoterpene linalool confers resistance to rice bacterial blight and its biosynthesis is regulated by JAZ protein in rice.

    Science.gov (United States)

    Taniguchi, Shiduku; Hosokawa-Shinonaga, Yumi; Tamaoki, Daisuke; Yamada, Shoko; Akimitsu, Kazuya; Gomi, Kenji

    2014-02-01

    Jasmonic acid (JA) is involved in the regulation of host immunity in plants. Recently, we demonstrated that JA signalling has an important role in resistance to rice bacterial blight caused by Xanthomonas oryzae pv. oryzae (Xoo) in rice. Here, we report that many volatile compounds accumulate in response to exogenous application of JA, including the monoterpene linalool. Expression of linalool synthase was up-regulated by JA. Vapour treatment with linalool induced resistance to Xoo, and transgenic rice plants overexpressing linalool synthase were more resistance to Xoo, presumably due to the up-regulation of defence-related genes in the absence of any treatment. JA-induced accumulation of linalool was regulated by OsJAZ8, a rice jasmonate ZIM-domain protein involving the JA signalling pathway at the transcriptional level, suggesting that linalool plays an important role in JA-induced resistance to Xoo in rice. © 2013 John Wiley & Sons Ltd.

  12. Comparative proteomics analysis of the rice roots colonized by Herbaspirillum seropedicae strain SmR1 reveals induction of the methionine recycling in the plant host.

    Science.gov (United States)

    Alberton, Dayane; Müller-Santos, Marcelo; Brusamarello-Santos, Liziane Cristina Campos; Valdameri, Glaucio; Cordeiro, Fabio Aparecido; Yates, Marshall Geoffrey; de Oliveira Pedrosa, Fabio; de Souza, Emanuel Maltempi

    2013-11-01

    Although the use of plant growth-promoting bacteria in agriculture is a reality, the molecular basis of plant-bacterial interaction is still poorly understood. We used a proteomic approach to study the mechanisms of interaction of Herbaspirillum seropedicae SmR1 with rice. Root proteins of rice seedlings inoculated or noninoculated with H. seropedicae were separated by 2-D electrophoresis. Differentially expressed proteins were identified by MALDI-TOF/TOF and MASCOT program. Among the identified proteins of H. seropedicae, the dinitrogenase reductase NifH and glutamine synthetase GlnA, which participate in nitrogen fixation and ammonium assimilation, respectively, were the most abundant. The rice proteins up-regulated included the S-adenosylmethionine synthetase, methylthioribose kinase, and acireductone dioxygenase 1, all of which are involved in the methionine recycling. S-Adenosylmethionine synthetase catalyzes the synthesis of S-adenosylmethionine, an intermediate used in transmethylation reactions and in ethylene, polyamine, and phytosiderophore biosynthesis. RT-qPCR analysis also confirmed that the methionine recycling and phytosiderophore biosynthesis genes were up-regulated, while ACC oxidase mRNA level was down-regulated in rice roots colonized by bacteria. In agreement with these results, ethylene production was reduced approximately three-fold in rice roots colonized by H. seropedicae. The results suggest that H. seropedicae stimulates methionine recycling and phytosiderophore synthesis and diminishes ethylene synthesis in rice roots.

  13. Indica rice (Oryza sativa, BR29 and IR64).

    Science.gov (United States)

    Datta, Karabi; Datta, Swapan Kumar

    2006-01-01

    Rice is the world's most important food crop. Indica-type rice provides the staple food for more than half of the world population. To satisfy the growing demand of the ever-increasing population, more sustained production of indica-type rice is needed. In addition, because of the high per capita consumption of indica rice, improvement of any traits including its nutritive value may have a significant positive health outcome for the rice-consuming population. Rice yield productivity is greatly affected by different biotic stresses, like diseases and insect pests, and abiotic stresses like drought, cold, and salinity. Attempts to improve resistance in rice to these stresses by conventional breeding through introgression of traits have limited success owing to a lack of resistance germplasm in the wild relatives. Gene transfer technology with genes from other sources can be used to make rice plants resistant or tolerant to insect pests, diseases, and different environmental stresses. For improving the nutritional value of the edible endosperm part of the rice, genes for increasing iron, beta-carotene, or better quality protein can be introduced in rice plants by genetic engineering. Different crops have been transformed using various gene transfer methods, such as protoplast transformation, biolistic, and Agrobacterium-mediated transformation. This chapter describes the Agrobacterium-mediated transformation protocol for indica-type rice. The selectable marker genes used are hygromycin phosphotransferase (hpt), neomycin phosphotransferase (nptII), or phosphomannose isomerase (pmi), and, accordingly, the selection agents are hygromycin, kanamycin (G418), or mannose, respectively.

  14. Less adaption of newly approved variety Basmati 515 among aromatic basmati rice varieties in Kallar Tract of Punjab, Pakistan

    Directory of Open Access Journals (Sweden)

    Muhammad Tahir Latif

    2017-12-01

    Full Text Available A field survey was conducted after harvesting of rice crop 2016 to identify the reasons for less adaption of aromatic rice variety Basmati 515. The rice growers adopting rice-wheat cropping pattern in kallar tract were included in population of research study. Thirty male farmers from each selected district making a total of 180 respondent farmers were interviewed by convenience sampling method. The survey findings showed that the aromatic rice variety Basmati 515 was cultivated on only 2.7% rice area while maximum area (47.3% was under Super basmati variety. The comparison of Basmati 515 was made with Super basmati and PS 2 due to comparatively more cultivated area and declared yield potential of these varieties. Overall the farmers were applying under dosed phosphorus fertilizer (DAP as 0.25, 0.20 and 0.22 bag ha-1 respectively for basmati 515, super basmati and PS-2 varieties. The descriptive analysis showed that the less adaptability of basmati 515 was due to less yield and more attacks of borer (11%, BLB (10% and leaf roller (3.25% in comparison to other aromatic and fine rice varieties. Similarly maximum lodging (16% was recorded on basmati 515. Maximum yield was estimated for PS 2 variety (4.7 t ha-1 followed by super basmati (4.0 t ha-1 and basmati 515 (3.78 t ha-1. The market price of super basmati was still higher due to its natural aroma, long & thin grain and export demand. The research institutes should focus for development of new aromatic high yielding and more qualitative rice varieties to increase the rice production and export.

  15. SGD1, a key enzyme in tocopherol biosynthesis, is essential for plant development and cold tolerance in rice.

    Science.gov (United States)

    Wang, Di; Wang, Yunlong; Long, Wuhua; Niu, Mei; Zhao, Zhigang; Teng, Xuan; Zhu, Xiaopin; Zhu, Jianping; Hao, Yuanyuan; Wang, Yongfei; Liu, Yi; Jiang, Ling; Wang, Yihua; Wan, Jianmin

    2017-07-01

    Tocopherols, a group of Vitamin E compounds, are essential components of the human diet. In contrast to well documented roles in animals, the functions of tocopherols in plants are less understood. In this study, we characterized two allelic rice dwarf mutant lines designated sgd1-1 and sgd1-2 (small grain and dwarf1). Histological observations showed that the dwarf phenotypes were mainly due to cell elongation defects. A map-based cloning strategy and subsequent complementation test showed that SGD1 encodes homogentisate phytyltransferase (HPT), a key enzyme in tocopherol biosynthesis. Mutation of SGD1 resulted in tocopherol deficiency in both sgd1mutants. No oxidant damage was detected in the sgd1 mutants. Further analysis showed that sgd1-2 was hypersensitive to cold stress. Our results indicate that SGD1 is essential for plant development and cold tolerance in rice. Copyright © 2017 Elsevier B.V. All rights reserved.

  16. Super Rice Cropping Will Enhance Rice Yield and Reduce CH4 Emission: A Case Study in Nanjing, China

    Directory of Open Access Journals (Sweden)

    Yu JIANG

    2013-11-01

    Full Text Available A pot experiment was performed to learn the differences in plant productivity and CH4 emission between two rice cultivars, super rice variety Ningjing 1 and traditional variety Zhendao 11, which were currently commercially applied in Nanjing, China. Similar seasonal changes of CH4 emission fluxes and soil solution CH4 contents were found between the tested cultivars. Although there was no significant difference in plant biomass production between the cultivars, the grain yield of Ningjing 1 was significantly higher by 35.0% (P < 0.05 than that of Zhendao 11, whereas the total CH4 emission from Ningjing 1 was 35.2% lower (P < 0.05. The main difference in the amounts of CH4 emission between the cultivars occurred in the period from the tillering stage to the heading stage. The biomass-scaled and yield-scaled CH4 emissions were respectively 3.8 and 5.2 mg/g for Ningjing 1, significantly lower than those for Zhendao 11 (7.4 and 12.8 mg/g, respectively. According to the relationships between the plant growth characteristics and the CH4 emission, a stronger root system contributed mainly to the lower CH4 emission of Ningjing 1, as compared with Zhendao 11. Our results demonstrated that super rice has advantages not only in grain productivity but also in CH4 emission mitigation. Further expansion of super rice cropping will enhance rice yield and reduce greenhouse gas emission in China.

  17. Overexpression of maize anthocyanin regulatory gene Lc affects rice fertility.

    Science.gov (United States)

    Li, Yuan; Zhang, Tao; Shen, Zhong-Wei; Xu, Yu; Li, Jian-Yue

    2013-01-01

    Seventeen independent transgenic rice plants with the maize anthocyanin regulatory gene Lc under control of the CaMV 35S promoter were obtained and verified by molecular identification. Ten plants showed red spikelets during early development of florets, and the degenerate florets were still red after heading. Additionally, these plants exhibited intense pigmentation on the surface of the anther and the bottom of the ovary. They were unable to properly bloom and were completely sterile. Following pollination with normal pollen, these plants yielded red caryopses but did not mature normally. QRT-PCR analysis indicated that mRNA accumulation of the CHS-like gene encoding a chalcone synthase-related protein was increased significantly in the sterile plant. This is the first report to suggest that upregulation of the CHS gene expression may result in rice sterility and affect the normal development of rice seeds.

  18. Genetic and Physiological Characterization of Two Clusters of Quantitative Trait Loci Associated With Seed Dormancy and Plant Height in Rice

    OpenAIRE

    Ye, Heng; Beighley, Donn H.; Feng, Jiuhuan; Gu, Xing-You

    2013-01-01

    Seed dormancy and plant height have been well-studied in plant genetics, but their relatedness and shared regulatory mechanisms in natural variants remain unclear. The introgression of chromosomal segments from weedy into cultivated rice (Oryza sativa) prompted the detection of two clusters (qSD1-2/qPH1 and qSD7-2/qPH7) of quantitative trait loci both associated with seed dormancy and plant height. Together, these two clusters accounted for >96% of the variances for plant height and ~71% of t...

  19. Making Rice Production More Environmentally-Friendly

    Directory of Open Access Journals (Sweden)

    Norman Uphoff

    2016-05-01

    Full Text Available Irrigated rice production is one of the most essential agricultural activities for sustaining our global population, and at the same time, one of the agricultural sectors considered most eco-unfriendly. This is because it consumes a larger share of available freshwater resources, competing with varied ecosystems as well as other economic sectors; its paddy fields are responsible for significant emission of greenhouse gases; and the reliance on chemical fertilizers and various agrochemicals contributes to pollution of soils and water systems. These stresses on soils, hydrology and atmosphere are actually not necessary for rice production, which can be increased by modifying agronomic practices though more agroecologically-sound management practices. These, combined under the rubric of the System of Rice Intensification (SRI, can reduce requirements of irrigation water, chemical fertilizer and agrochemicals while increasing paddy yields and farmer’s net incomes. Here we discuss how irrigated rice production can be made more eco-friendly for the benefit of farmers, consumers and the environment. This is achieved by introducing practices that improve the growth and functioning of rice plants’ root systems and enhance the abundance, diversity and activity of beneficial soil organisms that live around plant roots and within the plants themselves as symbiotic endophytes.

  20. RiceFOX: a database of Arabidopsis mutant lines overexpressing rice full-length cDNA that contains a wide range of trait information to facilitate analysis of gene function.

    Science.gov (United States)

    Sakurai, Tetsuya; Kondou, Youichi; Akiyama, Kenji; Kurotani, Atsushi; Higuchi, Mieko; Ichikawa, Takanari; Kuroda, Hirofumi; Kusano, Miyako; Mori, Masaki; Saitou, Tsutomu; Sakakibara, Hitoshi; Sugano, Shoji; Suzuki, Makoto; Takahashi, Hideki; Takahashi, Shinya; Takatsuji, Hiroshi; Yokotani, Naoki; Yoshizumi, Takeshi; Saito, Kazuki; Shinozaki, Kazuo; Oda, Kenji; Hirochika, Hirohiko; Matsui, Minami

    2011-02-01

    Identification of gene function is important not only for basic research but also for applied science, especially with regard to improvements in crop production. For rapid and efficient elucidation of useful traits, we developed a system named FOX hunting (Full-length cDNA Over-eXpressor gene hunting) using full-length cDNAs (fl-cDNAs). A heterologous expression approach provides a solution for the high-throughput characterization of gene functions in agricultural plant species. Since fl-cDNAs contain all the information of functional mRNAs and proteins, we introduced rice fl-cDNAs into Arabidopsis plants for systematic gain-of-function mutation. We generated >30,000 independent Arabidopsis transgenic lines expressing rice fl-cDNAs (rice FOX Arabidopsis mutant lines). These rice FOX Arabidopsis lines were screened systematically for various criteria such as morphology, photosynthesis, UV resistance, element composition, plant hormone profile, metabolite profile/fingerprinting, bacterial resistance, and heat and salt tolerance. The information obtained from these screenings was compiled into a database named 'RiceFOX'. This database contains around 18,000 records of rice FOX Arabidopsis lines and allows users to search against all the observed results, ranging from morphological to invisible traits. The number of searchable items is approximately 100; moreover, the rice FOX Arabidopsis lines can be searched by rice and Arabidopsis gene/protein identifiers, sequence similarity to the introduced rice fl-cDNA and traits. The RiceFOX database is available at http://ricefox.psc.riken.jp/.

  1. Induced mutation for tungro resistance in rice

    International Nuclear Information System (INIS)

    Ikeda, R.; Yumol, R.R.; Taura, S.

    2001-01-01

    Tungro is the most serious virus disease of rice in South and Southeast Asia. It is a composite disease of two kinds of viruses, rice tungro bacilliform virus (RTBV) and rice tungro spherical virus (RTSV). Damage to the plant is mostly caused by RTBV, while RTSV acts to facilitate RTBV acquisition and transmission by insect vector. Both viruses are transmitted mainly by green leafhopper (GLH). Resistance to GLH is common in rice germplasm but extremely rare for the two viruses. To induce mutations for tungro resistance, a susceptible variety IR22 was treated with N-methyl-N-nitrosourea (MNH) following the procedure of Satoh and Omura. The panicles of rice variety 'IR22' were soaked in 1 mM MNH solution for 45 minutes at 16 to 18 hours after flowering. Two thousand six hundred and forty fertile M 1 plants were produced. From these plants M 2 lines with 10 or more seedlings were planted in the field to evaluate their reaction against tungro under natural conditions in the 1990 dry season on the IRRI central research farm, Los Banos, the Philippines. Of these, 124 M 2 lines were selected by visual evaluation. Five plants were harvested individually from each selected line. A bulk was also made from all the remaining plants in the line. In the M 3 generation, each family consisted of five sister lines and one bulked line. One line (M 3 -723) showed no tungro symptoms and its related bulk segregated for resistance but all other M 3 lines from the same family were susceptible to tungro. The resistant line, M 3 -723, showed low infection with RTBV and RTSV when leaves were tested by enzyme-linked immunosorbent assay (ELISA) to diagnose tungro infection. All M 4 lines from M 3 -723 showed uniform resistance in the field. They were not infected with RTBV and were resistant to RTSV infection

  2. Proposal of a growth chamber for growing Super-Dwarf Rice in Space Agriculture

    Science.gov (United States)

    Hirai, Hiroaki; Kitaya, Yoshiaki; Tsukamoto, Koya; Yamashita, Youichirou; Hirai, Takehiro

    Space agriculture needs to be considered to supply food for space crew who stay in space over an extended time period. So far crops such as wheat, onion, oat, pea and lettuce grew to explore the possibility of space agriculture. Although rice is a staple food for most of the world, research on rice cultivation in space has not been done much. Rice grains are nutrient-rich with carbohydrate, protein and dietary fiber. Moreover, rice is a high yield crop and harvested grains have a long shelf life. However, the plant height of standard rice cultivars is relatively long, requiring much space. In addition, rice plants require higher light intensities for greater yield. For these reasons, it is difficult to establish facilities for rice culture in a limited space with a low cost. We propose to employee a super-dwarf cultivar and a small growth chamber with a new type of LEDs. The super-dwarf rice is a short-grain japonica variety and the plant height is approximately 20 cm that is one-fifth as tall as standard cultivars. The LED light used as a light source for this study can provide full spectrum of 380 nm to 750 nm. Air temperature and humidity were controlled by a Peltier device equipped in the chamber. The characteristics of the new type of LEDs and other equipments of the chamber and the ground based performance of super-dwarf rice plants grown in the chamber will be reported.

  3. Cultivar specific plant-soil feedback overrules soil legacy effects of elevated ozone in a rice-wheat rotation system

    NARCIS (Netherlands)

    Li, Qi; Yang, Yue; Bao, Xuelian; Zhu, Jianguo; Liang, Wenju; Bezemer, T. Martijn

    2016-01-01

    Abstract Tropospheric ozone has been recognized as one of the most important air pollutants. Many studies have shown that elevated ozone negatively impacts yields of important crops such as wheat or rice, but how ozone influences soil ecosystems of these crops and plant growth in rotation systems is

  4. Distribution, and uptake by rice plants of 15N-labeled ammonium applied in mudballs in paddy soils

    International Nuclear Information System (INIS)

    Ventura, Wilbur; Yoshida, Tomio

    1978-01-01

    A 1974 field experiment determined the distribution, and uptake by rice plants, of ammonium fertilizer at 60 kg N/ha applied in mudballs into the reduced layer of paddy soil. The fertilizer-carrying mudballs were placed at the center of four hills. At the center of the plot, one 15 N-labeled mudball was applied and the 15 N content of the plants surrounding the site of placement were determined. For comparison, labeled ammonium fertilizer was basally incorporated with the entire puddled layer and a topdress application was made 39 days before heading. There was little movement of the ammonium nitrogen horizontally from the site of placement so that the distribution of 15 N was restricted to the four adjacent plant hills. The distribution of incorporated ammonium fertilizer with the puddled layer was likewise restricted to the four adjacent rice plants but topdressing, with the unavoidable disturbance of the floodwater, resulted to a wide distribution of the 15 N-labeled fertilizer. In all the methods of application, there was an uneven uptake of 15 N among four plants adjacent to the site of placement. An increase of at least 10% in the efficiency of ammonium fertilizer was obtained by the deep placement of ammoniated mudballs as compared to the common practice of incorporating the fertilizer with the puddled soil layer. Topdressing at 39 days before heading, however, was as efficient as mudballs applied at the same stage of growth. There was no significant increase in grain yield by deep placement of fertilizer because of the high initial nitrogen content of the soil. (author)

  5. Expressing OsMPK4 Impairs Plant Growth but Enhances the Resistance of Rice to the Striped Stem Borer Chilo suppressalis

    OpenAIRE

    Xiaoli Liu; Jiancai Li; Liping Xu; Qi Wang; Yonggen Lou

    2018-01-01

    Mitogen-activated protein kinases (MPKs) play a central role not only in plant growth and development, but also in plant responses to abiotic and biotic stresses, including pathogens. Yet, their role in herbivore-induced plant defenses and their underlying mechanisms remain largely unknown. Here, we cloned a rice MPK gene, OsMPK4, whose expression was induced by mechanical wounding, infestation of the striped stem borer (SSB) Chilo suppressalis, and treatment with jasmonic acid (JA), but not ...

  6. Systematic analysis of rice (Oryza sativa) metabolic responses to herbivory.

    Science.gov (United States)

    Alamgir, Kabir Md; Hojo, Yuko; Christeller, John T; Fukumoto, Kaori; Isshiki, Ryutaro; Shinya, Tomonori; Baldwin, Ian T; Galis, Ivan

    2016-02-01

    Plants defend against attack from herbivores by direct and indirect defence mechanisms mediated by the accumulation of phytoalexins and release of volatile signals, respectively. While the defensive arsenals of some plants, such as tobacco and Arabidopsis are well known, most of rice's (Oryza sativa) defence metabolites and their effectiveness against herbivores remain uncharacterized. Here, we used a non-biassed metabolomics approach to identify many novel herbivory-regulated metabolic signatures in rice. Most were up-regulated by herbivore attack while only a few were suppressed. Two of the most prominent up-regulated signatures were characterized as phenolamides (PAs), p-coumaroylputrescine and feruloylputrescine. PAs accumulated in response to attack by both chewing insects, i.e. feeding of the lawn armyworm (Spodoptera mauritia) and the rice skipper (Parnara guttata) larvae, and the attack of the sucking insect, the brown planthopper (Nilaparvata lugens, BPH). In bioassays, BPH insects feeding on 15% sugar solution containing p-coumaroylputrescine or feruloylputrescine, at concentrations similar to those elicited by heavy BPH attack in rice, had a higher mortality compared to those feeding on sugar diet alone. Our results highlight PAs as a rapidly expanding new group of plant defence metabolites that are elicited by herbivore attack, and deter herbivores in rice and other plants. © 2015 John Wiley & Sons Ltd.

  7. OsMPK3 positively regulates the JA signaling pathway and plant resistance to a chewing herbivore in rice.

    Science.gov (United States)

    Wang, Qi; Li, Jiancai; Hu, Lingfei; Zhang, Tongfang; Zhang, Guren; Lou, Yonggen

    2013-07-01

    KEY MESSAGE : Silencing OsMPK3 decreased elicited JA levels, which subsequently reduced levels of herbivore-induced trypsin protease inhibitors (TrypPIs) and improved the performance of SSB larvae, but did not influence BPH. Mitogen-activated protein kinases (MPKs) are known to play an important role in plant defense by transferring biotic and abiotic signals into programmed cellular responses. However, their functions in the herbivore-induced defense response in rice remain largely unknown. Here, we identified a MPK3 gene from rice, OsMPK3, and found that its expression levels were up-regulated in response to infestation by the larvae of the striped stem borer (SSB) (Chilo suppressalis), to mechanical wounding and to treatment with jasmonic acid (JA), but not to infestation by the brown planthopper (BPH) Nilaparvata lugens or to treatment with salicylic acid. Moreover, mechanical wounding and SSB infestation induced the expression of OsMPK3 strongly and quickly, whereas JA treatment induced the gene more weakly and slowly. Silencing OsMPK3 (ir-mpk3) reduced the expression of the gene by 50-70 %, decreased elicited levels of JA and diminished the expression of a lipoxygenase gene OsHI-LOX and an allene oxide synthase gene OsAOS1. The reduced JA signaling in ir-mpk3 plants decreased the levels of herbivore-induced trypsin protease inhibitors (TrypPIs) and improved the performance of SSB larvae, but did not influence BPH. Our findings suggest that the gene OsMPK3 responds early in herbivore-induced defense and can be regulated by rice plants to activate a specific and appropriate defense response to different herbivores.

  8. Comparative genome analysis of rice-pathogenic Burkholderia provides insight into capacity to adapt to different environments and hosts.

    Science.gov (United States)

    Seo, Young-Su; Lim, Jae Yun; Park, Jungwook; Kim, Sunyoung; Lee, Hyun-Hee; Cheong, Hoon; Kim, Sang-Mok; Moon, Jae Sun; Hwang, Ingyu

    2015-05-06

    In addition to human and animal diseases, bacteria of the genus Burkholderia can cause plant diseases. The representative species of rice-pathogenic Burkholderia are Burkholderia glumae, B. gladioli, and B. plantarii, which primarily cause grain rot, sheath rot, and seedling blight, respectively, resulting in severe reductions in rice production. Though Burkholderia rice pathogens cause problems in rice-growing countries, comprehensive studies of these rice-pathogenic species aiming to control Burkholderia-mediated diseases are only in the early stages. We first sequenced the complete genome of B. plantarii ATCC 43733T. Second, we conducted comparative analysis of the newly sequenced B. plantarii ATCC 43733T genome with eleven complete or draft genomes of B. glumae and B. gladioli strains. Furthermore, we compared the genome of three rice Burkholderia pathogens with those of other Burkholderia species such as those found in environmental habitats and those known as animal/human pathogens. These B. glumae, B. gladioli, and B. plantarii strains have unique genes involved in toxoflavin or tropolone toxin production and the clustered regularly interspaced short palindromic repeats (CRISPR)-mediated bacterial immune system. Although the genome of B. plantarii ATCC 43733T has many common features with those of B. glumae and B. gladioli, this B. plantarii strain has several unique features, including quorum sensing and CRISPR/CRISPR-associated protein (Cas) systems. The complete genome sequence of B. plantarii ATCC 43733T and publicly available genomes of B. glumae BGR1 and B. gladioli BSR3 enabled comprehensive comparative genome analyses among three rice-pathogenic Burkholderia species responsible for tissue rotting and seedling blight. Our results suggest that B. glumae has evolved rapidly, or has undergone rapid genome rearrangements or deletions, in response to the hosts. It also, clarifies the unique features of rice pathogenic Burkholderia species relative to other

  9. Functional genomics strategies with transposons in rice

    NARCIS (Netherlands)

    Greco, R.

    2003-01-01

    Rice is a major staple food crop and a recognizedmonocotylenedousmodel plant from which gene function discovery is projected to contribute to improvements in a variety of cereals like wheat and maize. The recent release of rough drafts of the rice genome sequence for public

  10. Plant regeneration from haploid cell suspension-derived protoplasts of Mediterranean rice (Oryza sativa L. cv. Miara).

    Science.gov (United States)

    Guiderdoni, E; Chaïr, H

    1992-11-01

    More than 750 plants were regenerated from protoplasts isolated from microspore callus-derived cell suspensions of the Mediterranean japonica rice Miara, using a nurse-feeder technique and N6-based culture medium. The mean plating efficiency and the mean regeneration ability of the protocalluses were 0.5% and 49% respectively. Flow cytometric evaluation of the DNA contents of 7 month old-cell and protoplast suspensions showed that they were still haploid. Contrastingly, the DNA contents of leaf cell nuclei of the regenerated protoclones ranged from 1C to 5C including 60% 2C plants. This was consistent with the morphological type and the fertility of the mature plants. These results and the absence of chimeric plants suggest that polyploidization occurred during the early phase of protoplast culture.

  11. Dynamics of pH, Ferrum and Mangan, and Phosphorus on Newly Opened Paddy Soil having High Soil Organic Matter on Rice Growth

    Directory of Open Access Journals (Sweden)

    Sukristyonubowo

    2012-01-01

    Full Text Available Research had been carried out at the Research and Soil Testing Laboratory and Greenhouse of Soil ResearchInstitute, Bogor using newly opened paddy soil from Pesisir Selatan districts, West Sumatra (one year old. Totaltreatments tested were 12 which were combination of farmer rate, NPK recommendation (½×; ¾×; 1½×, strawcompost (½×; ¾×; 1½×, and dolomite. The trial was conducted using a completely randomized design with threereplications. This research had been prepared in two units, one unit for observing plant response to nutrientmanagement and another unit for incubation trial with the same treatment placed in the greenhouse. Rice cultivarused was IR-42 in accordance to the preferred varieties of local farmers. The sampling method for measuring thesolubility of Fe2+ and Mn2+, as well as the availability of PO43- was by centrifuge 50 g mud samples from theincubation pots then separated clear extract using filter paper. The observation results on dynamics of pH, Fe2+,Mn2+ and PO4-3 mainly occured in 1 to 14 days after submerging (incubation. After 14 days soil reaction had reachedthermodynamic sequence of oxidation-reduction processes, the PO43- more available and pH of the soil reached thepeak. The optimum dose of NPK fertilizer obtained 0.875 NPK or equal to 175 kg of urea, 87.5 kg of SP-36 and 87.5 kgKCl ha-1. The highest number of hills achieved from straw compost treatment 1½ organic matter (OM or 3 tons withan increase of 20%. Application of ameliorant dolomite increased the number of tillers about 2-3%, but insignificantlydifferent with no dolomite treatment.

  12. A collection of cytochrome P450 monooxygenase genes involved in modification and detoxification of herbicide atrazine in rice (Oryza sativa) plants.

    Science.gov (United States)

    Rong Tan, Li; Chen Lu, Yi; Jing Zhang, Jing; Luo, Fang; Yang, Hong

    2015-09-01

    Plant cytochrome P450 monooxygenases constitute one of the largest families of protein genes involved in plant growth, development and acclimation to biotic and abiotic stresses. However, whether these genes respond to organic toxic compounds and their biological functions for detoxifying toxic compounds such as herbicides in rice are poorly understood. The present study identified 201 genes encoding cytochrome P450s from an atrazine-exposed rice transcriptome through high-throughput sequencing. Of these, 69 cytochrome P450 genes were validated by microarray and some of them were confirmed by real time PCR. Activities of NADPH-cytochrome P450 reductase (CPR) and p-nitroanisole O-demethylase (PNOD) related to toxicity were determined and significantly induced by atrazine exposure. To dissect the mechanism underlying atrazine modification and detoxification by P450, metabolites (or derivatives) of atrazine in plants were analyzed by ultra performance liquid chromatography mass spectrometry (UPLC/MS). Major metabolites comprised desmethylatrazine (DMA), desethylatrazine (DEA), desisopropylatrazine (DIA), hydroxyatrazine (HA), hydroxyethylatrazine (HEA) and hydroxyisopropylatrazine (HIA). All of them were chemically modified by P450s. Furthermore, two specific inhibitors of piperonyl butoxide (PBO) and malathion (MAL) were used to assess the correlation between the P450s activity and rice responses including accumulation of atrazine in tissues, shoot and root growth and detoxification. Copyright © 2015 Elsevier Inc. All rights reserved.

  13. Weed communities of rain-fed lowland rice vary with infestation by Rhamphicarpa fistulosa

    Science.gov (United States)

    Houngbédji, Tossimidé; Dessaint, Fabrice; Nicolardot, Bernard; Shykoff, Jacqui A.; Gibot-Leclerc, Stéphanie

    2016-11-01

    The facultative hemiparasitic plant Rhamphicarpa fistulosa (Orobanchaceae) thrives in seasonally wet soils in sub-Saharan Africa, mainly in marginal lowland rice growing environments where weeds are already a major constraint for rice production. Because lowland rice production is increasing in tropical Africa, it is important to ascertain the influence of R. fistulosa on weed plant communities in these rice-growing habitats. We investigated weed plant community richness and composition at four different levels of R. fistulosa infestation across two years of surveys from lowland rice fields in northern Togo (West Africa). Despite a lack of significant differences in community richness among sites with different R. fistulosa infestation levels, there were significant differences in community composition, both when estimated from presence-absence data and from relative abundance data, after controlling statistically for geographic proximity among sites. Rhamphicarpa fistulosa infestation, therefore, may influence the competitive balance between rice and its weeds and shape weed community structure. However, experimental studies are required to elucidate the weed host range of R. fistulosa and the direct and indirect effects of this hemiparasite in rice fields in order to predict its net impact on rice and its weed species.

  14. Effects of rapeseed residue on lead and cadmium availability and uptake by rice plants in heavy metal contaminated paddy soil.

    Science.gov (United States)

    Ok, Yong Sik; Usman, Adel R A; Lee, Sang Soo; Abd El-Azeem, Samy A M; Choi, Bongsu; Hashimoto, Yohey; Yang, Jae E

    2011-10-01

    Rapeseed (Brassica napus L.) has been cultivated for biodiesel production worldwide. Winter rapeseed is commonly grown in the southern part of Korea under a rice-rapeseed double cropping system. In this study, a greenhouse pot experiment was conducted to assess the effects of rapeseed residue applied as a green manure alone or in combinations with mineral N fertilizer on Cd and Pb speciation in the contaminated paddy soil and their availability to rice plant (Oryza sativa L.). The changes in soil chemical and biological properties in response to the addition of rapeseed residue were also evaluated. Specifically, the following four treatments were evaluated: 100% mineral N fertilizer (N100) as a control, 70% mineral N fertilizer+rapeseed residue (N70+R), 30% mineral N fertilizer+rapeseed residue (N30+R) and rapeseed residue alone (R). The electrical conductivity and exchangeable cations of the rice paddy soil subjected to the R treatment or in combinations with mineral N fertilizer treatment, N70+R and N30+R, were higher than those in soils subjected to the N100 treatment. However, the soil pH value with the R treatment (pH 6.3) was lower than that with N100 treatment (pH 6.9). Use of rapeseed residue as a green manure led to an increase in soil organic matter (SOM) and enhanced the microbial populations in the soil. Sequential extraction also revealed that the addition of rapeseed residue decreased the easily accessible fraction of Cd by 5-14% and Pb by 30-39% through the transformation into less accessible fractions, thereby reducing metal availability to the rice plant. Overall, the incorporation of rapeseed residue into the metal contaminated rice paddy soils may sustain SOM, improve the soil chemical and biological properties, and decrease the heavy metal phytoavailability. Copyright © 2011 Elsevier Ltd. All rights reserved.

  15. Metabolic fate of 14-C-fenitrothion in a rice field model ecosystem

    International Nuclear Information System (INIS)

    Nashriyah binti Mat; Nambu, K.; Miyashita, T.; Sakata, S.; Ohshima, M.

    1991-01-01

    Pesticide fenitrothion (Sumithion sup R)is widely used to control rice stem borer and other pests. Its metabolic fate and degradation was studied using the sup 14 C-ring labelled fenitrothion in a model ecosystem consisting of Takarazuka paddy field soil, rice plant (Oryza sativa var. nihonbare), carp fish (Cyprinus carpio L.) and dechlorinated water. Radioactive fenitrothion was applied at a normal rate as used by Japanese farmers and samples of rice plant, fish soil and water were analysed after ten days of application. Fenitrothion was readily metabolized in rice plant and fish and also readily degraded to a number of metabolites in water and flooded soil. Most of the radioactivity applied was found in the soil component of the ecosystem. A trace amount of fenitrooxon, the activated metabolite of fenitrothion was detected only in soil and water. A possible metabolic pathway of fenitrothion in the rice model ecosystem was proposed

  16. Association mapping of stigma and spikelet characteristics in rice (Oryza sativa L.)

    Science.gov (United States)

    Hybrid rice exhibits a yield advantage of 15 to 20 percent (or more than one ton of paddy rice per hectare) over the best traditional varieties. Because rice plants are self-pollinating, commercial production of hybrid seed plays a key role in successful implementation of hybrid rice. Stigma exserti...

  17. Overexpression of phosphomimic mutated OsWRKY53 leads to enhanced blast resistance in rice.

    Directory of Open Access Journals (Sweden)

    Tetsuya Chujo

    Full Text Available WRKY transcription factors and mitogen-activated protein kinase (MAPK cascades have been shown to play pivotal roles in the regulation of plant defense responses. We previously reported that OsWRKY53-overexpressing rice plants showed enhanced resistance to the rice blast fungus. In this study, we identified OsWRKY53 as a substrate of OsMPK3/OsMPK6, components of a fungal PAMP-responsive MAPK cascade in rice, and analyzed the effect of OsWRKY53 phosphorylation on the regulation of basal defense responses to a virulence race of rice blast fungus Magnaporthe oryzae strain Ina86-137. An in vitro phosphorylation assay revealed that the OsMPK3/OsMPK6 activated by OsMKK4 phosphorylated OsWRKY53 recombinant protein at its multiple clustered serine-proline residues (SP cluster. When OsWRKY53 was coexpressed with a constitutively active mutant of OsMKK4 in a transient reporter gene assay, the enhanced transactivation activity of OsWRKY53 was found to be dependent on phosphorylation of the SP cluster. Transgenic rice plants overexpressing a phospho-mimic mutant of OsWRKY53 (OsWRKY53SD showed further-enhanced disease resistance to the blast fungus compared to native OsWRKY53-overexpressing rice plants, and a substantial number of defense-related genes, including pathogenesis-related protein genes, were more upregulated in the OsWRKY53SD-overexpressing plants compared to the OsWRKY53-overexpressing plants. These results strongly suggest that the OsMKK4-OsMPK3/OsMPK6 cascade regulates transactivation activity of OsWRKY53, and overexpression of the phospho-mimic mutant of OsWRKY53 results in a major change to the rice transcriptome at steady state that leads to activation of a defense response against the blast fungus in rice plants.

  18. Overexpression of Phosphomimic Mutated OsWRKY53 Leads to Enhanced Blast Resistance in Rice

    Science.gov (United States)

    Ogawa, Satoshi; Masuda, Yuka; Shimizu, Takafumi; Kishi-Kaboshi, Mitsuko; Takahashi, Akira; Nishizawa, Yoko; Minami, Eiichi; Nojiri, Hideaki; Yamane, Hisakazu; Okada, Kazunori

    2014-01-01

    WRKY transcription factors and mitogen-activated protein kinase (MAPK) cascades have been shown to play pivotal roles in the regulation of plant defense responses. We previously reported that OsWRKY53-overexpressing rice plants showed enhanced resistance to the rice blast fungus. In this study, we identified OsWRKY53 as a substrate of OsMPK3/OsMPK6, components of a fungal PAMP-responsive MAPK cascade in rice, and analyzed the effect of OsWRKY53 phosphorylation on the regulation of basal defense responses to a virulence race of rice blast fungus Magnaporthe oryzae strain Ina86-137. An in vitro phosphorylation assay revealed that the OsMPK3/OsMPK6 activated by OsMKK4 phosphorylated OsWRKY53 recombinant protein at its multiple clustered serine-proline residues (SP cluster). When OsWRKY53 was coexpressed with a constitutively active mutant of OsMKK4 in a transient reporter gene assay, the enhanced transactivation activity of OsWRKY53 was found to be dependent on phosphorylation of the SP cluster. Transgenic rice plants overexpressing a phospho-mimic mutant of OsWRKY53 (OsWRKY53SD) showed further-enhanced disease resistance to the blast fungus compared to native OsWRKY53-overexpressing rice plants, and a substantial number of defense-related genes, including pathogenesis-related protein genes, were more upregulated in the OsWRKY53SD-overexpressing plants compared to the OsWRKY53-overexpressing plants. These results strongly suggest that the OsMKK4-OsMPK3/OsMPK6 cascade regulates transactivation activity of OsWRKY53, and overexpression of the phospho-mimic mutant of OsWRKY53 results in a major change to the rice transcriptome at steady state that leads to activation of a defense response against the blast fungus in rice plants. PMID:24892523

  19. Selection of nectar plants for use in ecological engineering to promote biological control of rice pests by the predatory bug, Cyrtorhinus lividipennis, (Heteroptera: Miridae).

    Science.gov (United States)

    Zhu, Pingyang; Lu, Zhongxian; Heong, Kongluen; Chen, Guihua; Zheng, Xusong; Xu, Hongxing; Yang, Yajun; Nicol, Helen I; Gurr, Geoff M

    2014-01-01

    Ecological engineering for pest management involves the identification of optimal forms of botanical diversity to incorporate into a farming system to suppress pests, by promoting their natural enemies. Whilst this approach has been extensively researched in many temperate crop systems, much less has been done for rice. This paper reports the influence of various plant species on the performance of a key natural enemy of rice planthopper pests, the predatory mirid bug, Cyrtorhinus lividipennis. Survival of adult males and females was increased by the presence of flowering Tagetes erecta, Trida procumbens, Emilia sonchifolia (Compositae), and Sesamum indicum (Pedaliaceae) compared with water or nil controls. All flower treatments resulted in increased consumption of brown plant hopper, Nilaparvata lugens, and for female C. lividipennis, S. indicum was the most favorable. A separate study with a wider range of plant species and varying densities of prey eggs showed that S. indicum most strongly promoted predation by C. lividipennis. Reflecting this, S. indicum gave a relatively high rate of prey search and low prey handling time. On this basis, S. indicum was selected for more detailed studies to check if its potential incorporation into the farming system would not inadvertently benefit Cnaphalocrocis medinalis and Marasmia patnalis, serious Lepidoptera pests of rice. Adult longevity and fecundity of both pests was comparable for S. indicum and water treatments and significantly lower than the honey solution treatment. Findings indicate that S. indicumis well suited for use as an ecological engineering plant in the margins of rice crops. Sesame indicum can be a valuable crop as well as providing benefits to C. lividipennis whilst denying benefit to key pests.

  20. Selection of nectar plants for use in ecological engineering to promote biological control of rice pests by the predatory bug, Cyrtorhinus lividipennis, (Heteroptera: Miridae.

    Directory of Open Access Journals (Sweden)

    Pingyang Zhu

    Full Text Available Ecological engineering for pest management involves the identification of optimal forms of botanical diversity to incorporate into a farming system to suppress pests, by promoting their natural enemies. Whilst this approach has been extensively researched in many temperate crop systems, much less has been done for rice. This paper reports the influence of various plant species on the performance of a key natural enemy of rice planthopper pests, the predatory mirid bug, Cyrtorhinus lividipennis. Survival of adult males and females was increased by the presence of flowering Tagetes erecta, Trida procumbens, Emilia sonchifolia (Compositae, and Sesamum indicum (Pedaliaceae compared with water or nil controls. All flower treatments resulted in increased consumption of brown plant hopper, Nilaparvata lugens, and for female C. lividipennis, S. indicum was the most favorable. A separate study with a wider range of plant species and varying densities of prey eggs showed that S. indicum most strongly promoted predation by C. lividipennis. Reflecting this, S. indicum gave a relatively high rate of prey search and low prey handling time. On this basis, S. indicum was selected for more detailed studies to check if its potential incorporation into the farming system would not inadvertently benefit Cnaphalocrocis medinalis and Marasmia patnalis, serious Lepidoptera pests of rice. Adult longevity and fecundity of both pests was comparable for S. indicum and water treatments and significantly lower than the honey solution treatment. Findings indicate that S. indicumis well suited for use as an ecological engineering plant in the margins of rice crops. Sesame indicum can be a valuable crop as well as providing benefits to C. lividipennis whilst denying benefit to key pests.

  1. A spectral analysis of rice grains

    International Nuclear Information System (INIS)

    McIlvaine, M.S.; Cua, F.T.; Navarro, E.F.

    1976-06-01

    With the advent of extensive nuclear testing and the development and use of highly potent pesticides and fertilizers, the hazardous threats of radioactive contamination due to fallout and to the absorption of pesticide residues have been given due consideration. Among the many forms of life exposed to these threats are food crops and among these is rice. Several rice grain samples - Japanese rice samples ''A'' and ''B'' submitted by the National Grains Authority (NGA) for analysis, random samples of rice being sold to the public at local markets, and ''black rice'' which were picked from along the shores of a Mindoro town were subjected to spectral analysis. Results revealed the presence of trace elements normally found in plants, such as; K-42, I-124, Cl-38, Na-24, Br-82, and Mn-56. No mercury was detected in the sample specimen analyzed

  2. Effects of lead contamination on soil enzymatic activities, microbial biomass, and rice physiological indices in soil-lead-rice (Oryza sativa L.) system.

    Science.gov (United States)

    Zeng, Lu S; Liao, Min; Chen, Cheng L; Huang, Chang Y

    2007-05-01

    The effect of lead (Pb) treatment on the soil enzymatic activities, soil microbial biomass, rice physiological indices and rice biomass were studied in a greenhouse pot experiment. Six levels of Pb viz. 0(CK), 100, 300, 500, 700, 900 mg/kg soil were applied in two types of paddy soils. The results showed that Pb treatment had a stimulating effect on soil enzymatic activities and microbial biomass carbon (Cmic) at low concentration and an inhibitory influence at higher concentration. The degree of influence on enzymatic activities and Cmic by Pb was related to the clay and organic matter contents of the soils. When the Pb treatment was raised to the level of 500 mg/kg, ecological risk appeared both to soil microorganisms and plants. The results also revealed a consistent trend of increased chlorophyll contents and rice biomass initially, maximum at a certain Pb treatment, and then decreased gradually with the increase in Pb concentration. Pb was effective in inducing proline accumulation and its toxicity causes oxidative stress in rice plants. Therefore, it was concluded that soil enzymatic activities, Cmic and rice physiological indices, could be sensitive indicators to reflect environmental stress in soil-lead-rice system.

  3. Dissipation of 14C chlorpyrifos in the rhizosphere of rice

    International Nuclear Information System (INIS)

    Sharungbam, Geeta Devi; Kapadnis, B.P.; Deopurkar, R.L.; Kale, S.P.

    2004-01-01

    The root exudates from the plants contribute to the biodegradation of insecticides. Although, different mechanisms have been proposed, there is no clear elucidation of any mechanism. This study investigates the dissipation of an organophosphorus insecticide, chlorpyrifos in the rhizospheric soil planted with rice plant. Two sets of experimental tanks were maintained with or without plants using soil spiked with 1 mg kg -1 and 10 mg kg -1 of chlorpyrifos. Experiment was conducted for 180 days till the rice plant starts bearing seeds. The 14 C activity decreased rapidly in the rhizospheric soil as compare to the non-rhizospheric soil. The total culturable microflora were higher in the rhizospheric than the non-rhizospheric soil. The plant extract had given few counts indicating some negligible amount of chlorpyrifos uptake. The 14 C activity in the water was disappeared after 30 days. It was observed that very low amount of residue persisted in soil. This studies revealed that the plants play an important role in the dissipation of the chlorpyrifos from the rice flooded rhizospheric soil. (author)

  4. Photoperiod shift effects on yield characteristics of rice

    Science.gov (United States)

    Volk, G. M.; Mitchell, C. A.

    1995-01-01

    Edible yield must be maximized for each crop species selected for inclusion in the Controlled Ecological Life-Support System (CELSS) proposed by NASA to support long-term manned space missions. In a greenhouse study aimed at increasing biomass partitioning to rice (Oryza sativa L.) grain, plants of the high yielding semi-dwarf rice cultivar Ai-Nan-Tsao were started in pots under 8-h photoperiods at a density of 212 plants m-2. After different periods of time under 8-h photoperiods, pots were switched to continuous light for the remainder of the cropping cycle. Continuous light did not delay time to first panicle emergence (60 d) or time to harvest (83 d). There was a positive correlation between the length of continuous light treatments and nongrain biomass. Grain yield (1.6 +/- 0.2 g plant-1) did not increase in continuous light. Yield-efficiency rate (grain weight per length of cropping cycle, canopy volume, and weight of nongrain shoot biomass) was used to compare treatments. Small Ai-Nan-Tsao rice canopies grown under 8-h photoperiods were more efficient producers of grain than canopies grown under continuous light for a portion of the rice cropping cycle.

  5. Characterization of Nitrogen Uptake Pattern in Malaysian Rice MR219 at Different Growth Stages Using 15N Isotope

    Directory of Open Access Journals (Sweden)

    Mohammad Mu’az Hashim

    2015-09-01

    Full Text Available Nitrogen (N use efficiency is usually less than 50%, and it remains a major problem in rice cultivation. Controlled release fertilizer (CRF technology is one of the well-known efforts to overcome this problem. The efficiency of CRF, however, is very much dependent on the timing of nutrient release. This study was conducted to determine the precise time of N uptake by rice as a guideline to develop efficient CRF. Fertilizer N uptake by rice at different growth stages was investigated by using 15N isotopic technique. Rice was planted in pots, with 15N urea as N source at the rate of 120 kg/hm2. Potassium and phosphorus were applied at the same rate of 50 kg/hm2. Standard agronomic practices were employed throughout the growing periods. Rice plants were harvested every two weeks until maturation at the 14th week and analyzed for total N and 15N content. Nitrogen derived from fertilizer was calculated. Total N uptake in plants consistently increased until the 11th week. After that, it started to plateau and finally declined. Moreover, N utilization by rice plants peaked at 50%, which occurred during the 11th week after transplanting. N derived from fertilizer in rice plants were in the range of 18.7% to 40.0% in all plant tissues. The remaining N was derived from soil. Based on this study, N release from CRF should complete by the 11th week after planting to ensure the maximum fertilizer N uptake by rice plants. Efficient CRF should contribute to higher N derived from fertilizer which also resultedin a higher total N uptake by rice plants, increasing the potential of rice to produce higher yield while at the same time of reducing loss.

  6. Herbivory by resident geese: The loss and recovery of wild rice along the tidal Patuxent River

    Science.gov (United States)

    Haramis, G.M.; Kearns, G.D.

    2007-01-01

    Well known for a fall spectacle of maturing wild rice (Zizania aquatica) and migrant waterbirds, the tidal freshwater marshes of the Patuxent River, Maryland, USA, experienced a major decline in wild rice during the 1990s. We conducted experiments in 1999 and 2000 with fenced exclosures and discovered herbivory by resident Canada geese (Branta canadensis). Grazing by geese eliminated rice outside exclosures, whereas protected plants achieved greater size, density, and produced more panicles than rice occurring in natural stands. The observed loss of rice on the Patuxent River reflects both the sensitivity of this annual plant to herbivory and the destructive nature of an overabundance of resident geese on natural marsh vegetation. Recovery of rice followed 2 management actions: hunting removal of approximately 1,700 geese during a 4-year period and reestablishment of rice through a large-scale fencing and planting program.

  7. Microbial-driven arsenic cycling in rice paddies amended with monosodium methanearsonate

    Science.gov (United States)

    Maguffin, S. C.; McClung, A.; Rohila, J. S.; Derry, L. A.; Huang, R.; Reid, M. C.

    2017-12-01

    Rice consumption is the second largest contributor to human arsenic exposure worldwide and is linked to many serious diseases. Because rice is uniquely adapted for agricultural production under flooded soils, arsenic species solubilized in such environments can be effectively transported into plant tissue via root transporters. Through this process, both inorganic and organic (methylated) arsenic species can accumulate to problematic concentrations and may affect grain yield as well as crop value. The distribution of these species in plant tissue is determined by arsenic sources, as well as enzymatic redox and methylation-demethylation reactions in soils and pore water. Historic use of organoarsenic-based pesticides in US agriculture may provide an enduring source of arsenic in rice paddies. However, it is unclear how persistent these organic species are in the adsorbed phase or how available they remain to rice cultivars throughout the growing season. We conducted a field experiment in a 2x2 factorial design examining the effects of irrigation methods (continuous flooding and alternate wetting and drying) and monosodium methanearsonate (MSMA) application on the abundance and speciation of arsenic in pore water, soil, and rice plant tissues. We monitored arsenic speciation and partitioning between these reservoirs at semi-weekly to semi-monthly frequencies. Pore water arsenic speciation was determined using LC-ICP-MS, and X-ray absorption near-edge structure (XANES) analysis was employed to speciate the arsenic within solid-phase soil and plant tissue throughout the growing season. These data help clarify the role of two irrigation methods and MSMA amendments for arsenic bioavailability and speciation in rice. Furthermore, the study illuminates the significance of microbial metabolism in the reapportionment of arsenic within the soil-plant-water system and its impact on arsenic levels in rice grains.

  8. Influence of sulfur on the accumulation of mercury in rice plant (Oryza sativa L.) growing in mercury contaminated soils.

    Science.gov (United States)

    Li, Yunyun; Zhao, Jiating; Guo, Jingxia; Liu, Mengjiao; Xu, Qinlei; Li, Hong; Li, Yu-Feng; Zheng, Lei; Zhang, Zhiyong; Gao, Yuxi

    2017-09-01

    Sulfur (S) is an essential element for plant growth and its biogeochemical cycling is strongly linked to the species of heavy metals in soil. In this work, the effects of S (sulfate and elemental sulfur) treatment on the accumulation, distribution and chemical forms of Hg in rice growing in Hg contaminated soil were investigated. It was found that S could promote the formation of iron plaque on the root surface and decrease total mercury (T-Hg) and methylmercury (MeHg) accumulation in rice grains, straw, and roots. Hg in the root was dominated in the form of RS-Hg-SR. Sulfate treatment increased the percentage of RS-Hg-SR to T-Hg in the rice root and changed the Hg species in soil. The dominant Hg species (70%) in soil was organic substance bound fractions. Sulfur treatment decreased Hg motility in the rhizosphere soils by promoting the conversion of RS-Hg-SR to HgS. This study is significant since it suggests that low dose sulfur treatment in Hg-containing water irrigated soil can decrease both T-Hg and MeHg accumulation in rice via inactivating Hg in the soil and promoting the formation of iron plaque in rice root, which may reduce health risk for people consuming those crops. Copyright © 2017. Published by Elsevier Ltd.

  9. Impact of rice-straw biochars amended soil on the biological Si cycle in soil-plant ecosystem

    Science.gov (United States)

    Li, Zimin; Delvaux, Bruno; Struyf, Eric; Unzué-Belmonte, Dácil; Ronsse, Frederik; Cornelis, Jean-Thomas

    2017-04-01

    Biochar used as soil amendment can enhance soil fertility and plant growth. It may also contribute to increase the plant mineralomass of silicon (Si). However, very little studies have focused on the plant Si cycling in biochar amended soils. Here, we study the impact of two contrasting biochars derived from rice straws on soil Si availability and plant Si uptake. Rice plants were grown in a hydroponic device using Yoshida nutrient solution, respectively devoid of H4SiO4 (0 ppm Si: Si-) and enriched with it (40 ppm Si: Si+). After 12 weeks, the plants were harvested for further pyrolysis, conducted with holding time of 1h at 500˚ C. The respective rice-biochars are Si-/biochar and Si+/biochar. They exhibit contrasting phytolith contents (0.3 g Si kg-1 vs. 51.3 g Si kg-1), but identical physico-chemical properties. They were applied in two soils differing in weathering stage: a weathered Cambisol (CA) and a highly weathered Nitisol (NI). We then studied the effects of the amended biochar on CaCl2 extractable Si using a 64-days kinetic approach, on the content of soil biogenic Si, and on the uptake of Si by wheat plants grown for 5 weeks. We also quantified Si mineralomass in plants. We compared the effects of biochars to that of wollastonite (Wo)-(CaSiO3), a common Si-fertilizer. Our results show that Si+/biochar significantly increase the content of BSi in both soils. In CA, the cumulative content of CaCl2 extractable Si amounts to 85 mg kg-1 after Si+/biochar amendment, which is below the amount extracted after Wo application (100 mg kg-1). In contrast, in NI, the cumulative content of CaCl2 extractable Si is 198 mg kg-1 in the Si+/biochar amended treatment, which is far above the one measured after Wo application (93 mg kg-1). The Si-/biochar has no effect on the cumulative content of CaCl2 extractable Si in either soil type. Biochars and wollastonite increase the biomass of wheat on both soils. The increase is, however, larger in NI than in CA. In terms of Si

  10. Transfer of radioactive and chemical pollutants into irrigated rice fields

    International Nuclear Information System (INIS)

    Myttenaere, C.; Mousny, J.-M.; Dabin, P.; Bittel, R.

    1975-01-01

    In a general study on the consequences of radioactive and chemical releases in continental waters, flooded rice fields must be considered as a very important ecosystem due to the very large quantities of water used. In order to approach as much as possible to the natural conditions (irrigated rice fields of Northern Italy) ''mini-rice fields'' were built and local practices were respected. The behavior of activation and fission products ( 137 Cs, 60 Co, 65 Zn, 51 Cr...) and heavy metals pollutants (Cd, Cr, Sn) was studied and the transfer from water to soil and plant was followed. Concentration factors were calculated for the different organs of the plant and the impact of rice ingested to the dose delivered to man was evaluated [fr

  11. Persistence behavior of metamifop and its metabolite in rice ecosystem.

    Science.gov (United States)

    Barik, Suhrid Ranjan; Ganguly, Pritam; Patra, Sandip; Dutta, Swaraj Kumar; Goon, Arnab; Bhattacharyya, Anjan

    2018-02-01

    A field experiment was conducted to determine the persistence of metamifop in transplanted rice crop for two seasons. Metamifop 10% EC was applied at two doses: 100 g a.i. ha -1 and 200 g a.i. ha -1 at 2-3 leaf stage of Echinochloa crusgalli. The residues of metamifop along with its major metabolite, N-(2-fluorophenyl)-2-hydroxy-N-methylpropionamide (HFMPA), were estimated in rice plant, field water and soil using Liquid Chromatography Mass Spectrometry. Limit of detection and limit of quantification of the method for both the compounds were set at 0.003 μg g -1 and 0.010 μg g -1 respectively. Metamifop showed less persistence in field water and rice plant as compared to soil samples. Presence of HFMPA was recorded in rice plant and soil. Both the compounds were found below level of quantification in harvest samples of straw, grains, husk and soil. A safe waiting period of 52 d was suggested for harvesting of rice when metamifop was applied at 100 g a.i. ha -1 (recommended dose). Copyright © 2017 Elsevier Ltd. All rights reserved.

  12. Evaluation of rice genotypes to salt stress in different growth stages ...

    African Journals Online (AJOL)

    User

    2012-05-15

    May 15, 2012 ... 40 rice genotypes were screened in saline soil of electrical conductivity (EC) of 4, 8 and 12 ds/m in vegetative ... Plant growth, plant height or shoot biomass, were reported to .... biomass had positive effect on rice salinity tolerance. The .... Stem dry weight .... genotypes have more Na+ concentration in cells.

  13. An Inclusive Investigation on Conceivable Performance of Rice Straw Incinerated Electricity Generation

    Science.gov (United States)

    Bhattacharjee, Subhadeep; Mohanta, Subhajit

    2018-03-01

    Biomass energy is one of the potential renewable energy sources which occupy 77% of the available natural resources of the world. In India