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Sample records for nanopore transduction detector

  1. Smartphone Operated Signal Transduction by Ion Nanogating (STING) Amplifier for Nanopore Sensors: Design and Analytical Application

    Science.gov (United States)

    Özel, Rıfat Emrah; Kahnemouyi, Sina; Fan, Hsinwen; Mak, Wai Han; Lohith, Akshar; Seger, Adam; Teodorescu, Mircea; Pourmand, Nader

    2016-01-01

    In this report, we demonstrated a handheld wireless voltage-clamp amplifier for current measurement of nanopore sensors. This amplifier interfaces a sensing probe and connects wirelessly with a computer or smartphone for the required stimulus input, data processing and storage. To test the proposed Signal Transduction by Ion Nanogating (STING) wireless amplifier, in the current study the system was tested with a nano-pH sensor to measure pH of standard buffer solutions and the performance was compared against the commercial voltage-clamp amplifier. To our best knowledge, STING amplifier is the first miniaturized wireless voltage-clamp platform operated with a customized smart-phone application (app). PMID:27602408

  2. Highly sensitive thermoluminescent carbon doped nanoporous aluminium oxide detectors.

    Science.gov (United States)

    de Azevedo, W M; de Oliveira, G B; da Silva, E F; Khoury, H J; Oliveira de Jesus, E F

    2006-01-01

    In this work we present the synthesis, characterisation and the thermoluminescence (TL) response of nanoporous carbon doped aluminium oxide Al2O3:C produced by anodic oxidation of aluminium in organic and inorganic solvents. The X-ray and scanning electron microscopy (SEM) measurements reveal that the synthesised samples are amorphous and present highly ordered structures with uniform pore distribution with diameter of the order 50 nm. The photoluminescence and spectroscopic analysis in the visible and infrared regions show that the luminescence properties presented by the samples prepared in organic acid are due to carboxylate species, incorporated in anodic alumina films during the synthesis process. After an annealing treatment, part of the incorporated species decomposes and is incorporated into the structure of the aluminium oxide yielding a highly thermoluminescent detector (TL) . The results for X-ray irradiation in the range from 21 to 80 keV indicate a linear TL response with the dose in the range from 5 mGy to 1 Gy, suggesting that nanoporous aluminium oxide produced in the present route of synthesis is a suitable detector for radiation measurements.

  3. High-speed event detector for embedded nanopore bio-systems.

    Science.gov (United States)

    Huang, Yiyun; Magierowski, Sebastian; Ghafar-Zadeh, Ebrahim; Wang, Chengjie

    2015-08-01

    Biological measurements of microscopic phenomena often deal with discrete-event signals. The ability to automatically carry out such measurements at high-speed in a miniature embedded system is desirable but compromised by high-frequency noise along with practical constraints on filter quality and sampler resolution. This paper presents a real-time event-detection method in the context of nanopore sensing that helps to mitigate these drawbacks and allows accurate signal processing in an embedded system. Simulations show at least a 10× improvement over existing on-line detection methods.

  4. Nanoporous polymer electrolyte

    Science.gov (United States)

    Elliott, Brian [Wheat Ridge, CO; Nguyen, Vinh [Wheat Ridge, CO

    2012-04-24

    A nanoporous polymer electrolyte and methods for making the polymer electrolyte are disclosed. The polymer electrolyte comprises a crosslinked self-assembly of a polymerizable salt surfactant, wherein the crosslinked self-assembly includes nanopores and wherein the crosslinked self-assembly has a conductivity of at least 1.0.times.10.sup.-6 S/cm at 25.degree. C. The method of making a polymer electrolyte comprises providing a polymerizable salt surfactant. The method further comprises crosslinking the polymerizable salt surfactant to form a nanoporous polymer electrolyte.

  5. Micro-channel plate detector

    Science.gov (United States)

    Elam, Jeffrey W.; Lee, Seon W.; Wang, Hsien -Hau; Pellin, Michael J.; Byrum, Karen; Frisch, Henry J.

    2015-09-22

    A method and system for providing a micro-channel plate detector. An anodized aluminum oxide membrane is provided and includes a plurality of nanopores which have an Al coating and a thin layer of an emissive oxide material responsive to incident radiation, thereby providing a plurality of radiation sensitive channels for the micro-channel plate detector.

  6. Hydrophilic nanoporous materials

    DEFF Research Database (Denmark)

    2010-01-01

    The present application discloses a method for preparing and rendering hydrophilic a nanoporous material of a polymer matrix which has a porosity of 0.1-90 percent (v/v), such that the ratio between the final water absorption (percent (w/w)) and the porosity (percent (v/v)) is at least 0.05, the ......The present application discloses a method for preparing and rendering hydrophilic a nanoporous material of a polymer matrix which has a porosity of 0.1-90 percent (v/v), such that the ratio between the final water absorption (percent (w/w)) and the porosity (percent (v/v)) is at least 0.......05, the method comprising the steps of: (a) preparing a precursor material comprising at least one polymeric component and having a first phase and a second phase; (b) removal of at least a part of the first phase of the precursor material prepared in step (a) so as to leave behind a nanoporous material...... of the polymer matrix; (c) irradiating at least a part of said nanoporous material with light of a wave length of in the range of 250-400 nm (or 200-700 nm) in the presence of oxygen and/or ozone. Corresponding hydrophilic nanoporous materials are also disclosed. L...

  7. Building membrane nanopores

    Science.gov (United States)

    Howorka, Stefan

    2017-07-01

    Membrane nanopores--hollow nanoscale barrels that puncture biological or synthetic membranes--have become powerful tools in chemical- and biosensing, and have achieved notable success in portable DNA sequencing. The pores can be self-assembled from a variety of materials, including proteins, peptides, synthetic organic compounds and, more recently, DNA. But which building material is best for which application, and what is the relationship between pore structure and function? In this Review, I critically compare the characteristics of the different building materials, and explore the influence of the building material on pore structure, dynamics and function. I also discuss the future challenges of developing nanopore technology, and consider what the next-generation of nanopore structures could be and where further practical applications might emerge.

  8. Hydrophilic nanoporous materials

    DEFF Research Database (Denmark)

    2010-01-01

    .05, the method comprising the steps of: (a) preparing a precursor material comprising at least one polymeric component and having a first phase and a second phase; (b) removal of at least a part of the first phase of the precursor material prepared in step (a) so as to leave behind a nanoporous material...

  9. Nanocrystalline and Nanoporous Ceramics

    NARCIS (Netherlands)

    Verweij, Henk

    1996-01-01

    Nanocrystalline and nanoporous ceramics, renowned for their special transport properties, have typical applications in the fields of energy, the environment, and separation technology. One example is a solid oxide fuel cell, where an anode with improved characteristics was obtained by an optimized n

  10. Quantitation of signal transduction.

    Science.gov (United States)

    Krauss, S; Brand, M D

    2000-12-01

    Conventional qualitative approaches to signal transduction provide powerful ways to explore the architecture and function of signaling pathways. However, at the level of the complete system, they do not fully depict the interactions between signaling and metabolic pathways and fail to give a manageable overview of the complexity that is often a feature of cellular signal transduction. Here, we introduce a quantitative experimental approach to signal transduction that helps to overcome these difficulties. We present a quantitative analysis of signal transduction during early mitogen stimulation of lymphocytes, with steady-state respiration rate as a convenient marker of metabolic stimulation. First, by inhibiting various key signaling pathways, we measure their relative importance in regulating respiration. About 80% of the input signal is conveyed via identifiable routes: 50% through pathways sensitive to inhibitors of protein kinase C and MAP kinase and 30% through pathways sensitive to an inhibitor of calcineurin. Second, we quantify how each of these pathways differentially stimulates functional units of reactions that produce and consume a key intermediate in respiration: the mitochondrial membrane potential. Both the PKC and calcineurin routes stimulate consumption more strongly than production, whereas the unidentified signaling routes stimulate production more than consumption, leading to no change in membrane potential despite increased respiration rate. The approach allows a quantitative description of the relative importance of signal transduction pathways and the routes by which they activate a specific cellular process. It should be widely applicable.

  11. Transductive Ordinal Regression

    CERN Document Server

    Seah, Chun-Wei; Ong, Yew-Soon

    2011-01-01

    Ordinal regression is commonly formulated as a multi-class problem with ordinal constraints. The challenge of designing accurate classifiers for ordinal regression generally increases with the number of classes involved, due to the large number of labeled patterns that are needed. The availability of ordinal class labels, however, are often costly to calibrate or difficult to obtain. Unlabeled patterns, on the other hand, often exist in much greater abundance and are freely available. To take benefits from the abundance of unlabeled patterns, we present a novel transductive learning paradigm for ordinal regression in this paper, namely Transductive Ordinal Regression (TOR). The key challenge of the present study lies in the precise estimation of both the ordinal class label of the unlabeled data and the decision functions of the ordinal classes, simultaneously. The core elements of the proposed TOR include an objective function that caters to several commonly used loss functions casted in transductive setting...

  12. Nanopore sensors for DNA analysis

    DEFF Research Database (Denmark)

    Solovyeva, Vita; Venkatesan, B.M.; Shim, Jeong

    2012-01-01

    Solid-state nanopore sensors are promising devices for single DNA molecule detection and sequencing. This paper presents a review of our work on solid-state nanopores performed over the last decade. In particular, here we discuss atomic-layer-deposited (ALD)-based, graphene-based, and functionali......Solid-state nanopore sensors are promising devices for single DNA molecule detection and sequencing. This paper presents a review of our work on solid-state nanopores performed over the last decade. In particular, here we discuss atomic-layer-deposited (ALD)-based, graphene...

  13. Optimized nanoporous materials.

    Energy Technology Data Exchange (ETDEWEB)

    Braun, Paul V. (University of Illinois at Urbana-Champaign, Urbana, IL); Langham, Mary Elizabeth; Jacobs, Benjamin W.; Ong, Markus D.; Narayan, Roger J. (North Carolina State University, Raleigh, NC); Pierson, Bonnie E. (North Carolina State University, Raleigh, NC); Gittard, Shaun D. (North Carolina State University, Raleigh, NC); Robinson, David B.; Ham, Sung-Kyoung (Korea Basic Science Institute, Gangneung, South Korea); Chae, Weon-Sik (Korea Basic Science Institute, Gangneung, South Korea); Gough, Dara V. (University of Illinois at Urbana-Champaign, Urbana, IL); Wu, Chung-An Max; Ha, Cindy M.; Tran, Kim L.

    2009-09-01

    Nanoporous materials have maximum practical surface areas for electrical charge storage; every point in an electrode is within a few atoms of an interface at which charge can be stored. Metal-electrolyte interfaces make best use of surface area in porous materials. However, ion transport through long, narrow pores is slow. We seek to understand and optimize the tradeoff between capacity and transport. Modeling and measurements of nanoporous gold electrodes has allowed us to determine design principles, including the fact that these materials can deplete salt from the electrolyte, increasing resistance. We have developed fabrication techniques to demonstrate architectures inspired by these principles that may overcome identified obstacles. A key concept is that electrodes should be as close together as possible; this is likely to involve an interpenetrating pore structure. However, this may prove extremely challenging to fabricate at the finest scales; a hierarchically porous structure can be a worthy compromise.

  14. DNA-Based Nanopore Sensing.

    Science.gov (United States)

    Liu, Lei; Wu, Hai-Chen

    2016-12-05

    Nanopore sensing is an attractive, label-free approach that can measure single molecules. Although initially proposed for rapid and low-cost DNA sequencing, nanopore sensors have been successfully employed in the detection of a wide variety of substrates. Early successes were mostly achieved based on two main strategies by 1) creating sensing elements inside the nanopore through protein mutation and chemical modification or 2) using molecular adapters to enhance analyte recognition. Over the past five years, DNA molecules started to be used as probes for sensing rather than substrates for sequencing. In this Minireview, we highlight the recent research efforts of nanopore sensing based on DNA-mediated characteristic current events. As nanopore sensing is becoming increasingly important in biochemical and biophysical studies, DNA-based sensing may find wider applications in investigating DNA-involving biological processes. © 2016 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  15. Embedding a carbon nanotube across the diameter of a solid state nanopore

    CERN Document Server

    Sadki, E S; Vlassarev, D; Golovchenko, J A; Branton, D

    2013-01-01

    A fabrication method for positioning and embedding a single-walled carbon nanotube (SWNT) across the diameter of a solid state nanopore is presented. Chemical vapor deposition (CVD) is used to grow SWNTs over arrays of focused ion beam (FIB) milled pores in a thin silicon nitride membrane. This typically yields at least one pore whose diameter is centrally crossed by a SWNT. The final diameter of the FIB pore is adjusted to create a nanopore of any desired diameter by atomic layer deposition (ALD), simultaneously embedding and insulating the SWNT everywhere but in the region that crosses the diameter of the final nanopore, where it remains pristine and bare. This nanotube-articulated nanopore is an important step towards the realization of a new type of detector for biomolecule sensing and electronic characterization, including DNA sequencing.

  16. Localized functionalization of single nanopores

    Energy Technology Data Exchange (ETDEWEB)

    Nilsson, J; Lee, J I; Ratto, T V; Letant, S E

    2005-09-12

    We demonstrate the localization of chemical functionality at the entrance of single nanopores for the first time by using the controlled growth of an oxide ring. Nanopores were fabricated by Focused Ion Beam machining on silicon platforms, locally derivatized by ion beam assisted oxide deposition, and further functionalized with DNA probes via silane chemistry. Ionic current recorded through single nanopores at various stages of the fabrication process demonstrated that the apertures can be locally functionalized with DNA probes. Future applications for this functional platform include the selective detection of biological organisms and molecules by ionic current blockade measurements.

  17. Nanopore and nanoparticle catalysts.

    Science.gov (United States)

    Thomas, J M; Raja, R

    2001-01-01

    The design, atomic characterization, performance, and relevance to clean technology of two distinct categories of new nanocatalysts are described and interpreted. Exceptional molecular selectivity and high activity are exhibited by these catalysts. The first category consists of extended, crystallographically ordered inorganic solids possessing nanopores (apertures, cages, and channels), the diameters of which fall in the range of about 0.4 to about 1.5 nm, and the second of discrete bimetallic nanoparticles of diameter 1 to 2 nm, distributed more or less uniformly along the inner walls of mesoporous (ca. 3 to 10 nm diameter) silica supports. Using the principles and practices of solid-state and organometallic chemistry and advanced physico-chemical techniques for in situ and ex situ characterization, a variety of powerful new catalysts has been evolved. Apart from those that, inter alia, simulate the behavior of enzymes in their specificity, shape selectivity, regio-selectivity, and ability to function under ambient conditions, many of these new nanocatalysts are also viable as agents for effecting commercially significant processes in a clean, benign, solvent-free, single-step fashion. In particular, a bifunctional, molecular sieve nanopore catalyst is described that converts cyclohexanone in air and ammonia to its oxime and caprolactam, and a bimetallic nanoparticle catalyst that selectively converts cyclic polyenes into desirable intermediates. Nanocatalysts in the first category are especially effective in facilitating highly selective oxidations in air, and those in the second are well suited to effecting rapid and selective hydrogenations of a range of organic compounds.

  18. Nanoporous polymer liquid core waveguides

    DEFF Research Database (Denmark)

    Gopalakrishnan, Nimi; Christiansen, Mads Brøkner; Ndoni, Sokol

    2010-01-01

    We demonstrate liquid core waveguides defined by UV to enable selective water infiltration in nanoporous polymers, creating an effective refractive index shift Δn=0.13. The mode confinement and propagation loss in these waveguides are presented.......We demonstrate liquid core waveguides defined by UV to enable selective water infiltration in nanoporous polymers, creating an effective refractive index shift Δn=0.13. The mode confinement and propagation loss in these waveguides are presented....

  19. Noise Properties of Rectifying Nanopores

    Energy Technology Data Exchange (ETDEWEB)

    Powell, M R; Sa, N; Davenport, M; Healy, K; Vlassiouk, I; Letant, S E; Baker, L A; Siwy, Z S

    2011-02-18

    Ion currents through three types of rectifying nanoporous structures are studied and compared for the first time: conically shaped polymer nanopores, glass nanopipettes, and silicon nitride nanopores. Time signals of ion currents are analyzed by power spectrum. We focus on the low-frequency range where the power spectrum magnitude scales with frequency, f, as 1/f. Glass nanopipettes and polymer nanopores exhibit non-equilibrium 1/f noise, thus the normalized power spectrum depends on the voltage polarity and magnitude. In contrast, 1/f noise in rectifying silicon nitride nanopores is of equilibrium character. Various mechanisms underlying the voltage-dependent 1/f noise are explored and discussed, including intrinsic pore wall dynamics, and formation of vortices and non-linear flow patterns in the pore. Experimental data are supported by modeling of ion currents based on the coupled Poisson-Nernst-Planck and Navier Stokes equations. We conclude that the voltage-dependent 1/f noise observed in polymer and glass asymmetric nanopores might result from high and asymmetric electric fields inducing secondary effects in the pore such as enhanced water dissociation.

  20. DNA nanopore translocation in glutamate solutions

    NARCIS (Netherlands)

    Plesa, C.; Van Loo, N.; Dekker, C.

    2015-01-01

    Nanopore experiments have traditionally been carried out with chloride-based solutions. Here we introduce silver/silver-glutamate-based electrochemistry as an alternative, and study the viscosity, conductivity, and nanopore translocation characteristics of potassium-, sodium-, and lithium-glutamate

  1. Highly active thermally stable nanoporous gold catalyst

    Science.gov (United States)

    Biener, Juergen; Wittstock, Arne; Biener, Monika M.; Bagge-Hansen, Michael; Baeumer, Marcus; Wichmann, Andre; Neuman, Bjoern

    2016-12-20

    In one embodiment, a system includes a nanoporous gold structure and a plurality of oxide particles deposited on the nanoporous gold structure; the oxide particles are characterized by a crystalline phase. In another embodiment, a method includes depositing oxide nanoparticles on a nanoporous gold support to form an active structure and functionalizing the deposited oxide nanoparticles.

  2. Highly active thermally stable nanoporous gold catalyst

    Energy Technology Data Exchange (ETDEWEB)

    Biener, Juergen; Wittstock, Arne; Biener, Monika M.; Bagge-Hansen, Michael; Baeumer, Marcus; Wichmann, Andre; Neuman, Bjoern

    2016-12-20

    In one embodiment, a system includes a nanoporous gold structure and a plurality of oxide particles deposited on the nanoporous gold structure; the oxide particles are characterized by a crystalline phase. In another embodiment, a method includes depositing oxide nanoparticles on a nanoporous gold support to form an active structure and functionalizing the deposited oxide nanoparticles.

  3. Characterization of nanopores ordering in anodic alumina

    DEFF Research Database (Denmark)

    Mátéfi-Tempfli, Stefan; Mátéfi-Tempfli, M.; Piraux, L.

    2008-01-01

    A simple characterization method of the ordering of the nanopores is described for nanoporous anodized aluminium oxides. The method starts with image analysis on scanning electron microscopy representations for the purpose to find repetitive shapes and their centres, i.e. nanopores. Then triangles...

  4. Multiplexed ionic current sensing with glass nanopores.

    Science.gov (United States)

    Bell, Nicholas A W; Thacker, Vivek V; Hernández-Ainsa, Silvia; Fuentes-Perez, Maria E; Moreno-Herrero, Fernando; Liedl, Tim; Keyser, Ulrich F

    2013-05-21

    We report a method for simultaneous ionic current measurements of single molecules across up to 16 solid state nanopore channels. Each device, costing less than $20, contains 16 glass nanopores made by laser assisted capillary pulling. We demonstrate simultaneous multichannel detection of double stranded DNA and trapping of DNA origami nanostructures to form hybrid nanopores.

  5. Nanopores formed by DNA origami: a review.

    Science.gov (United States)

    Bell, Nicholas A W; Keyser, Ulrich F

    2014-10-01

    Nanopores have emerged over the past two decades to become an important technique in single molecule experimental physics and biomolecule sensing. Recently DNA nanotechnology, in particular DNA origami, has been used for the formation of nanopores in insulating materials. DNA origami is a very attractive technique for the formation of nanopores since it enables the construction of 3D shapes with precise control over geometry and surface functionality. DNA origami has been applied to nanopore research by forming hybrid architectures with solid state nanopores and by direct insertion into lipid bilayers. This review discusses recent experimental work in this area and provides an outlook for future avenues and challenges.

  6. Atomic layer deposition of nanoporous biomaterials

    Directory of Open Access Journals (Sweden)

    Roger J Narayan

    2010-03-01

    Full Text Available Due to its chemical stability, uniform pore size, and high pore density, nanoporous alumina is being investigated for use in biosensing, drug delivery, hemodialysis, and other medical applications. In recent work, we have examined the use of atomic layer deposition for coating the surfaces of nanoporous alumina membranes. Zinc oxide coatings were deposited on nanoporous alumina membranes using atomic layer deposition. The zinc oxide-coated nanoporous alumina membranes demonstrated antimicrobial activity against Escherichia coli and Staphylococcus aureus bacteria. These results suggest that atomic layer deposition is an attractive technique for modifying the surfaces of nanoporous alumina membranes and other nanostructured biomaterials.

  7. Nanopore-CMOS Interfaces for DNA Sequencing.

    Science.gov (United States)

    Magierowski, Sebastian; Huang, Yiyun; Wang, Chengjie; Ghafar-Zadeh, Ebrahim

    2016-08-06

    DNA sequencers based on nanopore sensors present an opportunity for a significant break from the template-based incumbents of the last forty years. Key advantages ushered by nanopore technology include a simplified chemistry and the ability to interface to CMOS technology. The latter opportunity offers substantial promise for improvement in sequencing speed, size and cost. This paper reviews existing and emerging means of interfacing nanopores to CMOS technology with an emphasis on massively-arrayed structures. It presents this in the context of incumbent DNA sequencing techniques, reviews and quantifies nanopore characteristics and models and presents CMOS circuit methods for the amplification of low-current nanopore signals in such interfaces.

  8. DNA Translocation through Graphene Nanopores

    CERN Document Server

    Schneider, Grégory F; Calado, Victor E; Pandraud, Grégory; Zandbergen, Henny W; Vandersypen, Lieven M K; Dekker, Cees

    2010-01-01

    Nanopores -- nanosized holes that can transport ions and molecules -- are very promising devices for genomic screening, in particular DNA sequencing. Both solid-state and biological pores suffer from the drawback, however, that the channel constituting the pore is long, viz. 10-100 times the distance between two bases in a DNA molecule (0.5 nm for single-stranded DNA). Here, we demonstrate that it is possible to realize and use ultrathin nanopores fabricated in graphene monolayers for single-molecule DNA translocation. The pores are obtained by placing a graphene flake over a microsize hole in a silicon nitride membrane and drilling a nanosize hole in the graphene using an electron beam. As individual DNA molecules translocate through the pore, characteristic temporary conductance changes are observed in the ionic current through the nanopore, setting the stage for future genomic screening.

  9. Switchable Imbibition in Nanoporous Gold

    CERN Document Server

    Xue, Yahui; Duan, Huiling; Weissmueller, Joerg; Huber, Patrick

    2014-01-01

    Spontaneous imbibition enables the elegant propelling of nano-flows because of the dominance of capillarity at small length scales. The imbibition kinetics are, however, solely determined by the static geometry of the porous host, the capillarity, and the fluidity of the imbibed liquid. This makes active control particularly challenging. Here, we show for aqueous electrolyte imbibition in nanoporous gold that the fluid flow can be reversibly switched on and off through electric potential control of the solid-liquid interfacial tension, i.e. we can accelerate the imbibition front, stop it, and have it proceed at will. Simultaneous measurements of the mass flux and the electrical current allow us to document simple scaling laws for the imbibition kinetics, and to explore the charge flow dynamics in the metallic nanopores. Our findings demonstrate that the high electric conductivity along with the pathways for ionic and/or fluid transport render nanoporous elemental gold a versatile, accurately controllable elec...

  10. Adsorption hysteresis in nanopores

    Science.gov (United States)

    Neimark; Ravikovitch; Vishnyakov

    2000-08-01

    Capillary condensation hysteresis in nanopores is studied by Monte Carlo simulations and the nonlocal density functional theory. Comparing the theoretical results with the experimental data on low temperature sorption of nitrogen and argon in cylindrical channels of mesoporous siliceous molecular sieves of MCM-41 type, we have revealed four qualitatively different sorption regimes depending on the temperature and pore size. As the pore size increases at a given temperature, or as the temperature decreases at a given pore size, the following regimes are consequently observed: volume filling without phase separation, reversible stepwise capillary condensation, irreversible capillary condensation with developing hysteresis, and capillary condensation with developed hysteresis. We show that, in the regime of developed hysteresis (pores wider than 5 nm in the case of nitrogen sorption at 77 K), condensation occurs spontaneously at the vaporlike spinodal while desorption takes place at the equilibrium. A quantitative agreement is found between the modeling results and the experimental hysteresis loops formed by the adsorption-desorption isotherms. The results obtained provide a better understanding of the general behavior of confined fluids and the specifics of sorption and phase transitions in nanomaterials.

  11. Nanoporous silicon oxide memory.

    Science.gov (United States)

    Wang, Gunuk; Yang, Yang; Lee, Jae-Hwang; Abramova, Vera; Fei, Huilong; Ruan, Gedeng; Thomas, Edwin L; Tour, James M

    2014-08-13

    Oxide-based two-terminal resistive random access memory (RRAM) is considered one of the most promising candidates for next-generation nonvolatile memory. We introduce here a new RRAM memory structure employing a nanoporous (NP) silicon oxide (SiOx) material which enables unipolar switching through its internal vertical nanogap. Through the control of the stochastic filament formation at low voltage, the NP SiOx memory exhibited an extremely low electroforming voltage (∼ 1.6 V) and outstanding performance metrics. These include multibit storage ability (up to 9-bits), a high ON-OFF ratio (up to 10(7) A), a long high-temperature lifetime (≥ 10(4) s at 100 °C), excellent cycling endurance (≥ 10(5)), sub-50 ns switching speeds, and low power consumption (∼ 6 × 10(-5) W/bit). Also provided is the room temperature processability for versatile fabrication without any compliance current being needed during electroforming or switching operations. Taken together, these metrics in NP SiOx RRAM provide a route toward easily accessed nonvolatile memory applications.

  12. Functional Nanoporous Polymers from Block Copolymer Precursors

    DEFF Research Database (Denmark)

    Guo, Fengxiao

    functionalities remains a great challenge due to the limitation of available polymer synthesis and the nanoscale confinement of the porous cavities. The main topic of this thesis is to develop methods for fabrication of functional nanoporous polymers from block copolymer precursors. A method has been developed...... functional nanoporous polymers based on nanoporous 1,2- polybuatdiene 1,2-PB, which is derived from a 1,2-PB-b-PDMS diblock copolymer precursor. As a result, nanoporous 1,2-PB with pores decorated of polyacrylates, sulfonated polymers and poly(ethylene glycol) are created. A method of vapor phase deposition...... has also been generated to obtain nanoporous polymers with functional coatings on pore walls. Vapor phase polymerization of pyrrole is performed to incorporate an ultra thin film of polypyrrole into nanoporous 1,2-PB. The preliminary test shows that nanoporous 1,2-PB gains conductivity. Generally...

  13. Integrins mediating bone signal transduction

    Institute of Scientific and Technical Information of China (English)

    HE Chuanglong; WANG Yuanliang; YANG Lihua; ZHANG Jun

    2004-01-01

    Integrin-mediated adhesions play critical roles in diverse cell functions. Integrins offers a platform on which mechanical stimuli, cytoskeletal organization, biochemical signals can concentrate. Mechanical stimuli transmitted by integrins influence the cytoskeleton, in turn, the cytoskeleton influences cell adhesion via integrins, then cell adhesion results in a series of signal transduction cascades. In skeleton, integrins also have a key role for bone resoption by osteoclasts and reformation by osteoblasts. In present review, the proteins involved in integrin signal transduction and integrin signal transduction pathways were discussed, mainly on the basic mechanisms of integrin signaling and the roles of integrins in bone signal transduction, which may give insight into new therapeutic agents to all kinds of skeletal diseases and new strategies for bone tissue engineering.

  14. Mechanical properties of nanoporous graphene membrane

    Science.gov (United States)

    Liu, Yilun; Chen, Xi

    2014-01-01

    Nanoporous graphene holds great promise in the application of filtration such as seawater desalination, gas separation, and ionic channels. In this paper, we study the mechanical properties of nanoporous graphene with different size, shape, and density of nanopore. The strength decreases as the size and porosity of the nanopore increases. However, the rough edges of the nanopore has significant influence to the strength where the blunt tip perpendicular to the loading direction has higher strength. The effective tensile modulus is only determined by porosity of the nanopore as ΔE ˜ -p0.64, while the strength is determined by the size, shape, and porosity of the nanopore, for the same type of nanopore the strength scales with the porosity as Δσs ˜ -p. In contrast, the effective fracture strain increases as porosity increases for small and moderate porosities. The work is a first study of the relation between mechanical properties and porosity of nanoporous graphene and is helpful to the design of high performance nanoporous graphene membrane.

  15. Atomic layer deposition of nanoporous biomaterials.

    Energy Technology Data Exchange (ETDEWEB)

    Narayan, R. J.; Adiga, S. P.; Pellin, M. J.; Curtiss, L. A.; Stafslien, S.; Chisholm, B.; Monteiro-Riviere, N. A.; Brigmon, R. L.; Elam, J. W.; Univ. of North Carolina; North Carolina State Univ.; Eastman Kodak Co.; North Dakota State Univ.; SRL

    2010-03-01

    Due to its chemical stability, uniform pore size, and high pore density, nanoporous alumina is being investigated for use in biosensing, drug delivery, hemodialysis, and other medical applications. In recent work, we have examined the use of atomic layer deposition for coating the surfaces of nanoporous alumina membranes. Zinc oxide coatings were deposited on nanoporous alumina membranes using atomic layer deposition. The zinc oxide-coated nanoporous alumina membranes demonstrated antimicrobial activity against Escherichia coli and Staphylococcus aureus bacteria. These results suggest that atomic layer deposition is an attractive technique for modifying the surfaces of nanoporous alumina membranes and other nanostructured biomaterials. Nanoporous alumina, also known as anodic aluminum oxide (AAO), is a nanomaterial that exhibits several unusual properties, including high pore densities, straight pores, small pore sizes, and uniform pore sizes. In 1953, Keller et al. showed that anodizing aluminum in acid electrolytes results in a thick layer of nearly cylindrical pores, which are arranged in a close-packed hexagonal cell structure. More recently, Matsuda & Fukuda demonstrated preparation of highly ordered platinum and gold nanohole arrays using a replication process. In this study, a negative structure of nanoporous alumina was initially fabricated and a positive structure of a nanoporous metal was subsequently fabricated. Over the past fifteen years, nanoporous alumina membranes have been used as templates for growth of a variety of nanostructured materials, including nanotubes, nanowires, nanorods, and nanoporous membranes.

  16. Superdiffusive gas recovery from nanopores

    Science.gov (United States)

    Wu, Haiyi; He, Yadong; Qiao, Rui

    2016-11-01

    Understanding the recovery of gas from reservoirs featuring pervasive nanopores is essential for effective shale gas extraction. Classical theories cannot accurately predict such gas recovery and many experimental observations are not well understood. Here we report molecular simulations of the recovery of gas from single nanopores, explicitly taking into account molecular gas-wall interactions. We show that, in very narrow pores, the strong gas-wall interactions are essential in determining the gas recovery behavior both quantitatively and qualitatively. These interactions cause the total diffusion coefficients of the gas molecules in nanopores to be smaller than those predicted by kinetic theories, hence slowing down the rate of gas recovery. These interactions also lead to significant adsorption of gas molecules on the pore walls. Because of the desorption of these gas molecules during gas recovery, the gas recovery from the nanopore does not exhibit the usual diffusive scaling law (i.e., the accumulative recovery scales as R ˜t1 /2 ) but follows a superdiffusive scaling law R ˜tn (n >0.5 ), which is similar to that observed in some field experiments. For the system studied here, the superdiffusive gas recovery scaling law can be captured well by continuum models in which the gas adsorption and desorption from pore walls are taken into account using the Langmuir model.

  17. Manipulation of Protein Translocation through Nanopores by Flow Field Control and Application to Nanopore Sensors.

    Science.gov (United States)

    Hsu, Wei-Lun; Daiguji, Hirofumi

    2016-09-20

    The control of biomolecule translocation through nanopores is important in nanopore protein detection. Improvement in current nanopore molecule control is desired to enhance capture rates, extend translocation times, and ensure the effective detection of various proteins in the same solutions. We present a method that simultaneously resolves these issues through the use of a gate-modulated conical nanopore coupled with solutions of varying salt concentration. Simulation results show that the presence of an induced reverse electroosmotic flow (IREOF) results in inlet flows from the two ends of the nanopore centerline entering into the nanopore in opposite directions, which simultaneously elevates the capture rate and immobilizes the protein in the nanopore, thus enabling steady current blockage measurements for a range of proteins. In addition, it is shown that proteins with different size/charge ratios can be trapped by a gate modulation intensified flow field at a similar location in the nanopore in the same solution conditions.

  18. Nanoporous Aluminium Oxide Membranes as Cell Interfaces

    Directory of Open Access Journals (Sweden)

    Dorothea Brüggemann

    2013-01-01

    Full Text Available Nanoporous anodic aluminium oxide (AAO has become increasingly important in biomedical applications over the past years due to its biocompatibility, increased surface area, and the possibility to tailor this nanomaterial with a wide range of surface modifications. AAO nanopores are formed in an inexpensive anodisation process of pure aluminium, which results in the self-assembly of highly ordered, vertical nanochannels with well-controllable pore diameters, depths, and interpore distances. Because of these outstanding properties AAO nanopores have become excellent candidates as nanostructured substrates for cell-interface studies. In this comprehensive review previous surveys on cell adhesion and proliferation on different AAO nanopore geometries and surface modifications are highlighted and summarised tabularly. Future applications of nanoporous alumina membranes in biotechnology and medicine are also outlined, for instance, the use of nanoporous AAO as implant modifications, coculture substrates, or immunoisolation devices.

  19. Nanoporous Polymeric Grating-Based Biosensors

    KAUST Repository

    Gao, Tieyu

    2012-05-02

    We demonstrate the utilization of an interferometrically created nanoporous polymeric gratings as a platform for biosensing applications. Aminopropyltriethoxysilane (APTES)-functionalized nanoporous polymeric gratings was fabricated by combining holographic interference patterning and APTES-functionalization of pre-polymer syrup. The successful detection of multiple biomolecules indicates that the biofunctionalized nanoporous polymeric gratings can act as biosensing platforms which are label-free, inexpensive, and applicable as high-throughput assays. Copyright © 2010 by ASME.

  20. Nanopore analytics: sensing of single molecules.

    Science.gov (United States)

    Howorka, Stefan; Siwy, Zuzanna

    2009-08-01

    In nanopore analytics, individual molecules pass through a single nanopore giving rise to detectable temporary blockades in ionic pore current. Reflecting its simplicity, nanopore analytics has gained popularity and can be conducted with natural protein as well as man-made polymeric and inorganic pores. The spectrum of detectable analytes ranges from nucleic acids, peptides, proteins, and biomolecular complexes to organic polymers and small molecules. Apart from being an analytical tool, nanopores have developed into a general platform technology to investigate the biophysics, physicochemistry, and chemistry of individual molecules (critical review, 310 references).

  1. New approach to fabricate nanoporous gold film

    Institute of Scientific and Technical Information of China (English)

    Hui Zhou; Lan Jin; Wei Xu

    2007-01-01

    A simple preparation of ultrathin nanoporous gold film was described. Copper and gold were used to fabricate Cu-Au alloy films through vacuum deposition. The formation of nanoporous gold films from the alloy films involved thermal process and chemical etch by hydrochloric acid or by nitric acid. The free-standing nanoporous gold films have been analyzed by scanning electron microscopy (SEM), transmission electron microscopy (TEM), X-ray photoelectron spectrometer (XPS) and surface-enhanced Raman scattering (SERS). It was noted that the nanoporous gold film etched by hydrochloric acid is uniform with a cover of fog-like moieties.

  2. Threading DNA through nanopores for biosensing applications

    Science.gov (United States)

    Fyta, Maria

    2015-07-01

    This review outlines the recent achievements in the field of nanopore research. Nanopores are typically used in single-molecule experiments and are believed to have a high potential to realize an ultra-fast and very cheap genome sequencer. Here, the various types of nanopore materials, ranging from biological to 2D nanopores are discussed together with their advantages and disadvantages. These nanopores can utilize different protocols to read out the DNA nucleobases. Although, the first nanopore devices have reached the market, many still have issues which do not allow a full realization of a nanopore sequencer able to sequence the human genome in about a day. Ways to control the DNA, its dynamics and speed as the biomolecule translocates the nanopore in order to increase the signal-to-noise ratio in the reading-out process are examined in this review. Finally, the advantages, as well as the drawbacks in distinguishing the DNA nucleotides, i.e., the genetic information, are presented in view of their importance in the field of nanopore sequencing.

  3. Molecular basis of mechanosensory transduction

    Science.gov (United States)

    Gillespie, Peter G.; Walker, Richard G.

    2001-09-01

    Mechanotransduction - a cell's conversion of a mechanical stimulus into an electrical signal - reveals vital features of an organism's environment. From hair cells and skin mechanoreceptors in vertebrates, to bristle receptors in flies and touch receptors in worms, mechanically sensitive cells are essential in the life of an organism. The scarcity of these cells and the uniqueness of their transduction mechanisms have conspired to slow molecular characterization of the ensembles that carry out mechanotransduction. But recent progress in both invertebrates and vertebrates is beginning to reveal the identities of proteins essential for transduction.

  4. Deformation Behavior of Nanoporous Metals

    Energy Technology Data Exchange (ETDEWEB)

    Biener, J; Hodge, A M; Hamza, A V

    2007-11-28

    Nanoporous open-cell foams are a rapidly growing class of high-porosity materials (porosity {ge} 70%). The research in this field is driven by the desire to create functional materials with unique physical, chemical and mechanical properties where the material properties emerge from both morphology and the material itself. An example is the development of nanoporous metallic materials for photonic and plasmonic applications which has recently attracted much interest. The general strategy is to take advantage of various size effects to introduce novel properties. These size effects arise from confinement of the material by pores and ligaments, and can range from electromagnetic resonances to length scale effects in plasticity. In this chapter we will focus on the mechanical properties of low density nanoporous metals and how these properties are affected by length scale effects and bonding characteristics. A thorough understanding of the mechanical behavior will open the door to further improve and fine-tune the mechanical properties of these sometimes very delicate materials, and thus will be crucial for integrating nanoporous metals into products. Cellular solids with pore sizes above 1 micron have been the subject of intense research for many years, and various scaling relations describing the mechanical properties have been developed.[4] In general, it has been found that the most important parameter in controlling their mechanical properties is the relative density, that is, the density of the foam divided by that of solid from which the foam is made. Other factors include the mechanical properties of the solid material and the foam morphology such as ligament shape and connectivity. The characteristic internal length scale of the structure as determined by pores and ligaments, on the other hand, usually has only little effect on the mechanical properties. This changes at the submicron length scale where the surface-to-volume ratio becomes large and the effect

  5. Ion selectivity of graphene nanopores

    OpenAIRE

    Rollings, Ryan C.; Kuan, Aaron T.; Golovchenko, Jene A.

    2016-01-01

    As population growth continues to outpace development of water infrastructure in many countries, desalination (the removal of salts from seawater) at high energy efficiency will likely become a vital source of fresh water. Due to its atomic thinness combined with its mechanical strength, porous graphene may be particularly well-suited for electrodialysis desalination, in which ions are removed under an electric field via ion-selective pores. Here, we show that single graphene nanopores prefer...

  6. Meeting Report: Teaching Signal Transduction

    Science.gov (United States)

    Kramer, IJsbrand; Thomas, Geraint

    2006-01-01

    In July, 2005, the European Institute of Chemistry and Biology at the campus of the University of Bordeaux, France, hosted a focused week of seminars, workshops, and discussions around the theme of "teaching signal transduction." The purpose of the summer school was to offer both junior and senior university instructors a chance to reflect on the…

  7. Solid-state Nanopore for Detecting Individual Biopolymers

    Science.gov (United States)

    Li, Jiali; Golovchenko, Jene A.

    2011-01-01

    Solid-state nanopores have been fabricated and used to characterize single DNA and protein molecules. Here we describe the details on how these nanopores were fabricated and characterized, the nanopore sensing system setup, and the protocols of using these nanopores to characterize DNA and protein molecules. PMID:19488695

  8. Method to fabricate functionalized conical nanopores

    Science.gov (United States)

    Small, Leo J.; Spoerke, Erik David; Wheeler, David R.

    2016-07-12

    A pressure-based chemical etch method is used to shape polymer nanopores into cones. By varying the pressure, the pore tip diameter can be controlled, while the pore base diameter is largely unaffected. The method provides an easy, low-cost approach for conically etching high density nanopores.

  9. Gyroid nanoporous scaffold for conductive polymers

    DEFF Research Database (Denmark)

    Guo, Fengxiao; Schulte, Lars; Zhang, Weimin

    2011-01-01

    Conductive nanoporous polymers with interconnected large surface area have been prepared by depositing polypyrrole onto nanocavity walls of nanoporous 1,2-polybutadiene films with gyroid morphology. Vapor phase polymerization of pyrrole was used to generate ultrathin films and prevent pore blocking...

  10. Nanopore sensors : From hybrid to abiotic systems

    NARCIS (Netherlands)

    Kocer, Armagan; Tauk, Lara; Dejardin, Philippe

    2012-01-01

    The use of nanopores of well controlled geometry for sensing molecules in solution is reviewed. Focus is concentrated especially on synthetic track-etch pores in polymer foils and on biological nanopores, i.e. ion channels. After a brief section about multipore sensors, specific attention is provide

  11. UV Defined Nanoporous Liquid Core Waveguides

    DEFF Research Database (Denmark)

    Christiansen, Mads Brøkner; Gopalakrishnan, Nimi; Ndoni, Sokol

    2011-01-01

    Nanoporous liquid core waveguides, where both core and cladding are made from the same material, are presented. The nanoporous polymer used is intrinsically hydrophobic, but selective UV exposure enables it to infiltrate with an aqueous solution, thus raising the refractive index from 1.26 to 1...

  12. Reconstructing solid state nanopore shape from electrical measurements

    Science.gov (United States)

    Liebes, Yael; Drozdov, Maria; Avital, Yotam Y.; Kauffmann, Yaron; Rapaport, Hanna; Kaplan, Wayne D.; Ashkenasy, Nurit

    2010-11-01

    The dependence of nanopore biosensor conductance signal on the nanopore shape makes it important to decipher the latter with high precision. We show here that the three dimensional shape of a nanopore, extracted from electron microscopy analysis, allows for modeling the conductance of the nanopore over a wide range of ionic strengths. Furthermore, we demonstrate that the dependence of the nanopore conductance on ionic strength can be used to accurately extract the nanopore shape, eliminating the need for lengthy electron microscopy analysis. The suggested methodology can be used to monitor changes in the nanopore shape and evaluate them during electrical characterization.

  13. Nanopore DNA sequencing using kinetic proofreading

    Science.gov (United States)

    Ling, Xinsheng

    We propose a method of DNA sequencing by combining the physical method of nanopore electrical measurements and Southern's sequencing-by-hybridization. The new key ingredient, essential to both lowering the costs and increasing the precision, is an asymmetric nanopore sandwich device capable of measuring the DNA hybridization probe twice separated by a designed waiting time. Those incorrect probes appearing only once in nanopore ionic current traces are discriminated from the correct ones that appear twice. This method of discrimination is similar to the principle of kinetic proofreading proposed by Hopfield and Ninio in gene transcription and translation processes. An error analysis is of this nanopore kinetic proofreading (nKP) technique for DNA sequencing is carried out in comparison with the most precise 3' dideoxy termination method developed by Sanger. Nanopore DNA sequencing using kinetic proofreading.

  14. Graphene nanopore devices for DNA sensing.

    Science.gov (United States)

    Merchant, Chris A; Drndić, Marija

    2012-01-01

    We describe here a method for detecting the translocation of individual DNA molecules through nanopores created in graphene membranes. The devices consist of 1-5-nm thick graphene membranes with electron-beam sculpted nanopores from 5 to 10 nm in diameter. Due to the thin nature of the graphene membranes, and the reduced electrical resistance, we observe larger blocked currents than for traditional solid-state nanopores. We also show how ionic current noise levels can be reduced with the atomic-layer deposition of a few nanometers of titanium dioxide over the graphene surface. Unlike traditional solid-state nanopore materials that are insulating, graphene is an excellent electrical conductor, and its use opens the door to a new future class of nanopore devices in which electronic sensing and control is performed directly at the pore.

  15. Nanoporous metals for advanced energy technologies

    CERN Document Server

    Ding, Yi

    2016-01-01

    This book covers the state-of-the-art research in nanoporous metals for potential applications in advanced energy fields, including proton exchange membrane fuel cells, Li batteries (Li ion, Li-S, and Li-O2), and supercapacitors. The related structural design and performance of nanoporous metals as well as possible mechanisms and challenges are fully addressed. The formation mechanisms of nanoporous metals during dealloying, the microstructures of nanoporous metals and characterization methods, as well as miscrostructural regulation of nanoporous metals through alloy design of precursors and surface diffusion control are also covered in detail. This is an ideal book for researchers, engineers, graduate students, and government/industry officers who are in charge of R&D investments and strategy related to energy technologies.

  16. Gibberellin Signal Transduction in Rice

    Institute of Scientific and Technical Information of China (English)

    Liu-Min Fan; Xiaoyan Feng; Yu Wang; Xing Wang Deng

    2007-01-01

    In the past decade, significant knowledge has accumulated regarding gibberellin (GA) signal transduction in rice as a result of studies using multiple approaches, particularly molecular genetics. The present review highlights the recent developments in the identification of GA signaling pathway components, the discovery of GA-induced destruction of GA signaling represser (DELLA protein), and the possible mechanism underlying the regulation of GA-responsive gene expression in rice.

  17. Water behaviour in nanoporous aluminosilicates

    Energy Technology Data Exchange (ETDEWEB)

    Smirnov, Konstantin S; Bougeard, Daniel, E-mail: Konstantin.Smirnov@univ-lille1.f [Laboratoire de Spectrochimie Infrarouge et Raman, Universite Lille 1, Sciences et Technologie, CNRS, Batiment C5, 59655 Villeneuve d' Ascq (France)

    2010-07-21

    This paper briefly reviews results of molecular dynamics simulation studies of water confined in nanoporous aluminosilicates. The behaviour of confined molecules is shown to be influenced by the nature of the host structure, and the size and the topology of the voids. For some of the systems discussed the ambiguity in results of different modelling studies call for the use of extended potential and structural models. Thus, the use of polarizable force fields was shown to be necessary to take into account the variation of the molecular dipole of confined molecules in different environments.

  18. DNA origami nanopores for controlling DNA translocation.

    Science.gov (United States)

    Hernández-Ainsa, Silvia; Bell, Nicholas A W; Thacker, Vivek V; Göpfrich, Kerstin; Misiunas, Karolis; Fuentes-Perez, Maria Eugenia; Moreno-Herrero, Fernando; Keyser, Ulrich F

    2013-07-23

    We combine DNA origami structures with glass nanocapillaries to reversibly form hybrid DNA origami nanopores. Trapping of the DNA origami onto the nanocapillary is proven by imaging fluorescently labeled DNA origami structures and simultaneous ionic current measurements of the trapping events. We then show two applications highlighting the versatility of these DNA origami nanopores. First, by tuning the pore size we can control the folding of dsDNA molecules ("physical control"). Second, we show that the specific introduction of binding sites in the DNA origami nanopore allows selective detection of ssDNA as a function of the DNA sequence ("chemical control").

  19. Nanoporous silica membranes with high hydrothermal stability

    DEFF Research Database (Denmark)

    Boffa, Vittorio; Magnacca, Giualiana; Yue, Yuanzheng

    Despite the use of sol-gel derived nanoporous silica membranes in substitution of traditional separation processes is expected leading to vast energy savings, their intrinsic poor steam-stability hampers their application at an industrial level. Transition metal ions can be used as dopant...... to improve the stability of nanoporous silica structure. This work is a quantitative study on the impact of type and concentration of transition metal ions on the microporous structure and stability of amorphous silica-based membranes, which provides information on how to design chemical compositions...... and synthetic paths for the fabrication of silica-based membranes with a well accessible and highly stabile nanoporous structure...

  20. Super-Diffusive Gas Recovery from Nanopores

    CERN Document Server

    Wu, Haiyi; Qiao, Rui

    2016-01-01

    Understanding the recovery of gas from reservoirs featuring pervasive nanopores is essential for effective shale gas extraction. Classical theories cannot accurately predict such gas recovery and many experimental observations are not well understood. Here we report molecular simulations of the recovery of gas from single nanopores, explicitly taking into account molecular gas-wall interactions. We show that, in very narrow pores, the strong gas-wall interactions are essential in determining the gas recovery behavior both quantitatively and qualitatively. These interactions cause the total diffusion coefficients of the gas molecules in nanopores to be smaller than those predicted by kinetic theories, hence slowing down the rate of gas recovery. These interactions also lead to significant adsorption of gas molecules on the pore walls. Because of the desorption of these gas molecules during gas recovery, the gas recovery from the nanopore does not exhibit the usual diffusive scaling law (i.e., the accumulative ...

  1. Improved Algorithms for Nanopore Signal Processing

    CERN Document Server

    Arjmandi, Nima; Lagae, Liesbet; Borghs, Gustaaf

    2012-01-01

    Nanopore resistive pulse techniques are based on analysis of current or voltage spikes in the recorded signal. These spikes result from translocation of nanometer sized analytes through a nanopore. The most important information that needs to be extracted is the duration, amplitude and number of the translocation spikes. The recorded signal is usually considerably noisy, with a huge baseline drift and hundreds of translocation spikes. Thus, incorporation of suitable signal processing algorithms is necessary for correct and fast detection of all the translocation spikes and to accurately measure their amplitude and duration. Generally, low-pass filtering is used for denoising, averaging is used for baseline detection, and thresholding is used for spike detection and measurement. Here we present novel algorithms and specifically developed software for nanopore signal processing that are significantly improving the accuracy of the nanopore measurements. It includes an improved method for baseline removing, an op...

  2. DNA sequencing by nanopores: advances and challenges

    Science.gov (United States)

    Agah, Shaghayegh; Zheng, Ming; Pasquali, Matteo; Kolomeisky, Anatoly B.

    2016-10-01

    Developing inexpensive and simple DNA sequencing methods capable of detecting entire genomes in short periods of time could revolutionize the world of medicine and technology. It will also lead to major advances in our understanding of fundamental biological processes. It has been shown that nanopores have the ability of single-molecule sensing of various biological molecules rapidly and at a low cost. This has stimulated significant experimental efforts in developing DNA sequencing techniques by utilizing biological and artificial nanopores. In this review, we discuss recent progress in the nanopore sequencing field with a focus on the nature of nanopores and on sensing mechanisms during the translocation. Current challenges and alternative methods are also discussed.

  3. DNA nanopore translocation in glutamate solutions

    Science.gov (United States)

    Plesa, C.; van Loo, N.; Dekker, C.

    2015-08-01

    Nanopore experiments have traditionally been carried out with chloride-based solutions. Here we introduce silver/silver-glutamate-based electrochemistry as an alternative, and study the viscosity, conductivity, and nanopore translocation characteristics of potassium-, sodium-, and lithium-glutamate solutions. We show that it has a linear response at typical voltages and can be used to detect DNA translocations through a nanopore. The glutamate anion also acts as a redox-capable thickening agent, with high-viscosity solutions capable of slowing down the DNA translocation process by up to 11 times, with a corresponding 7 time reduction in signal. These results demonstrate that glutamate can replace chloride as the primary anion in nanopore resistive pulse sensing.

  4. Controlled fabrication of nanopores using a direct focused ion beam approach with back face particle detection.

    Science.gov (United States)

    Patterson, N; Adams, D P; Hodges, V C; Vasile, M J; Michael, J R; Kotula, P G

    2008-06-11

    We report a direct, ion drilling technique that enables the reproducible fabrication and placement of nanopores in membranes of different thickness. Using a 30 keV focused Ga ion beam column combined with an in situ, back face, multi-channelplate particle detector, nanopores are sputtered in Si(3)N(4) and W/Si(3)N(4) to have diameters as small as 12 nm. Transmission electron microscopy shows that focused ion beam-drilled holes are near-conical with the diameter decreasing from entry to exit side. By monitoring the detector signal during ion exposure, the drilled hole width can be minimized such that the exit-side diameter is smaller than the full width at half-maximum of the nominally Gaussian-shaped incident beam. Judicious choice of the beam defining aperture combined with back face particle detection allows for reproducible exit-side hole diameters between 18 and 100 nm. The nanopore direct drilling technique does not require potentially damaging broad area exposure to tailor hole sizes. Moreover, this technique successfully achieves breakthrough despite the effects of varying membrane thickness, redeposition, polycrystalline grain structure, and slight ion beam current fluctuations.

  5. Sensory Transduction in Caenorhabditis elegans

    Science.gov (United States)

    Brown, Austin L.; Ramot, Daniel; Goodman, Miriam B.

    The roundworm Caenorhabditis elegans has a well-defined and comparatively simple repertoire of sensory-guided behaviors, all of which rely on its ability to detect chemical, mechanical or thermal stimuli. In this chapter, we review what is known about the ion channels that mediate sensation in this remarkable model organism. Genetic screens for mutants defective in sensory-guided behaviors have identified genes encoding channel proteins, which are likely transducers of chemical, thermal, and mechanical stimuli. Such classical genetic approaches are now being coupled with molecular genetics and in vivo cellular physiology to elucidate how these channels are activated in specific sensory neurons. The ion channel superfamilies implicated in sensory transduction in C. elegans - CNG, TRP, and DEG/ENaC - are conserved across phyla and also appear to contribute to sensory transduction in other organisms, including vertebrates. What we learn about the role of these ion channels in C. elegans sensation is likely to illuminate analogous processes in other animals, including humans.

  6. Engineered nanoporous and nanostructured films

    Directory of Open Access Journals (Sweden)

    Joel L. Plawsky

    2009-06-01

    Full Text Available Nanoporous and nanostructured films have become increasingly important to the microelectronics and photonics industries. They provide a route to low dielectric constant materials that will enable future generations of powerful microprocessors. They are the only route to achieving materials with refractive indices less than 1.2, a key feature for the future development of photonic crystal devices, enhanced omni-directional reflectors, enhanced anti-reflection coatings and black-body absorbers. In addition, these films exhibit tremendous potential for separations, catalytic, biomedical and heat transfer applications. This article will review two primary techniques for manufacturing these films, evaporation induced self-assembly and oblique or glancing angle deposition, and will discuss some of the film properties critical to their use in the microelectronics and photonics industries.

  7. Ion selectivity of graphene nanopores

    Science.gov (United States)

    Rollings, Ryan C.; Kuan, Aaron T.; Golovchenko, Jene A.

    2016-04-01

    As population growth continues to outpace development of water infrastructure in many countries, desalination (the removal of salts from seawater) at high energy efficiency will likely become a vital source of fresh water. Due to its atomic thinness combined with its mechanical strength, porous graphene may be particularly well-suited for electrodialysis desalination, in which ions are removed under an electric field via ion-selective pores. Here, we show that single graphene nanopores preferentially permit the passage of K+ cations over Cl- anions with selectivity ratios of over 100 and conduct monovalent cations up to 5 times more rapidly than divalent cations. Surprisingly, the observed K+/Cl- selectivity persists in pores even as large as about 20 nm in diameter, suggesting that high throughput, highly selective graphene electrodialysis membranes can be fabricated without the need for subnanometer control over pore size.

  8. In situ heavy ion irradiation studies of nanopore shrinkage and enhanced radiation tolerance of nanoporous Au

    Science.gov (United States)

    Li, Jin; Fan, C.; Ding, J.; Xue, S.; Chen, Y.; Li, Q.; Wang, H.; Zhang, X.

    2017-01-01

    High energy particle radiations induce severe microstructural damage in metallic materials. Nanoporous materials with a giant surface-to-volume ratio may alleviate radiation damage in irradiated metallic materials as free surface are defect sinks. Here we show, by using in situ Kr ion irradiation in a transmission electron microscope at room temperature, that nanoporous Au indeed has significantly improved radiation tolerance comparing with coarse-grained, fully dense Au. In situ studies show that nanopores can absorb and eliminate a large number of radiation-induced defect clusters. Meanwhile, nanopores shrink (self-heal) during radiation, and their shrinkage rate is pore size dependent. Furthermore, the in situ studies show dose-rate-dependent diffusivity of defect clusters. This study sheds light on the design of radiation-tolerant nanoporous metallic materials for advanced nuclear reactor applications.

  9. The Influence of Nanopore Dimensions on the Electrochemical Properties of Nanopore Arrays Studied by Impedance Spectroscopy

    Directory of Open Access Journals (Sweden)

    Krishna Kant

    2014-11-01

    Full Text Available The understanding of the electrochemical properties of nanopores is the key factor for better understanding their performance and applications for nanopore-based sensing devices. In this study, the influence of pore dimensions of nanoporous alumina (NPA membranes prepared by an anodization process and their electrochemical properties as a sensing platform using impedance spectroscopy was explored. NPA with four different pore diameters (25 nm, 45 nm and 65 nm and lengths (5 μm to 20 μm was used and their electrochemical properties were explored using different concentration of electrolyte solution (NaCl ranging from 1 to 100 μM. Our results show that the impedance and resistance of nanopores are influenced by the concentration and ion species of electrolytes, while the capacitance is independent of them. It was found that nanopore diameters also have a significant influence on impedance due to changes in the thickness of the double layer inside the pores.

  10. The Influence of Nanopore Dimensions on the Electrochemical Properties of Nanopore Arrays Studied by Impedance Spectroscopy

    Science.gov (United States)

    Kant, Krishna; Priest, Craig; Shapter, Joe G.; Losic, Dusan

    2014-01-01

    The understanding of the electrochemical properties of nanopores is the key factor for better understanding their performance and applications for nanopore-based sensing devices. In this study, the influence of pore dimensions of nanoporous alumina (NPA) membranes prepared by an anodization process and their electrochemical properties as a sensing platform using impedance spectroscopy was explored. NPA with four different pore diameters (25 nm, 45 nm and 65 nm) and lengths (5 μm to 20 μm) was used and their electrochemical properties were explored using different concentration of electrolyte solution (NaCl) ranging from 1 to 100 μM. Our results show that the impedance and resistance of nanopores are influenced by the concentration and ion species of electrolytes, while the capacitance is independent of them. It was found that nanopore diameters also have a significant influence on impedance due to changes in the thickness of the double layer inside the pores. PMID:25393785

  11. Nanopore biosensors for detection of proteins and nucleic acids

    NARCIS (Netherlands)

    Maglia, Giovanni; Soskine, Mikhael

    2014-01-01

    Described herein are nanopore biosensors based on a modified cytolysin protein. The nanopore biosensors accommodate macromoiecules including proteins and nucleic acids, and may additionally comprise ligands with selective binding properties.

  12. Nanopore biosensors for detection of proteins and nucleic acids

    NARCIS (Netherlands)

    Maglia, Giovanni; Soskine, Mikhael

    2014-01-01

    Described herein are nanopore biosensors based on a modified cytolysin protein. The nanopore biosensors accommodate macromoiecules including proteins and nucleic acids, and may additionally comprise ligands with selective binding properties.

  13. Poretools: a toolkit for analyzing nanopore sequence data

    OpenAIRE

    Loman, Nicholas J.; Quinlan, Aaron R.

    2014-01-01

    Motivation: Nanopore sequencing may be the next disruptive technology in genomics, owing to its ability to detect single DNA molecules without prior amplification, lack of reliance on expensive optical components, and the ability to sequence long fragments. The MinION™ from Oxford Nanopore Technologies (ONT) is the first nanopore sequencer to be commercialized and is now available to early-access users. The MinION™ is a USB-connected, portable nanopore sequencer that permits real-time analysi...

  14. Cellular semiotics and signal transduction

    DEFF Research Database (Denmark)

    Bruni, Luis Emilio

    2007-01-01

    to the processes of sign interpretation and transmission between organisms of the same or different species). In Biosemiotics it is customary to recognise the cell as the most elementary integration unit for semiosis. Therefore intra and intercellular communication constitute the departure point for the study......Semiosis, the processes of production, communication and interpretation of signs - coding and de-coding - takes place within and between organisms. The term "endosemiosis" refers to the processes of interpretation and sign transmission inside an organism (as opposed to "exosemiosis", which refers...... considering semiotic logic in order to construct our understanding of living phenomena. Given the central integrating role of signal transduction in physiological and ecological studies, this chapter outlines its semiotic implications. The multi-modality and modularity of signal molecules and relative...

  15. Architectures and representations for string transduction

    NARCIS (Netherlands)

    Chrupala, Grzegorz

    2015-01-01

    String transduction problems are ubiquitous in natural language processing: they include transliteration, grapheme-to-phoneme conversion, text normalization and translation. String transduction can be reduced to the simpler problems of sequence labeling by expressing the target string as a sequence

  16. Human hematopoietic cell culture, transduction, and analyses

    DEFF Research Database (Denmark)

    Bonde, Jesper; Wirthlin, Louisa; Kohn, Donald B;

    2008-01-01

    This unit provides methods for introducing genes into human hematopoietic progenitor cells. The Basic Protocol describes isolation of CD34(+) cells, transduction of these cells with a retroviral vector on fibronectin-coated plates, assaying the efficiency of transduction, and establishing long...

  17. Sentra, a database of signal transduction proteins.

    Energy Technology Data Exchange (ETDEWEB)

    Maltsev, N.; Marland, E.; Yu, G. X.; Bhatnagar, S.; Lusk, R.; Mathematics and Computer Science

    2002-01-01

    Sentra (http://www-wit.mcs.anl.gov/sentra) is a database of signal transduction proteins with the emphasis on microbial signal transduction. The database was updated to include classes of signal transduction systems modulated by either phosphorylation or methylation reactions such as PAS proteins and serine/threonine kinases, as well as the classical two-component histidine kinases and methyl-accepting chemotaxis proteins. Currently, Sentra contains signal transduction proteins from 43 completely sequenced prokaryotic genomes as well as sequences from SWISS-PROT and TrEMBL. Signal transduction proteins are annotated with information describing conserved domains, paralogous and orthologous sequences, and conserved chromosomal gene clusters. The newly developed user interface supports flexible search capabilities and extensive visualization of the data.

  18. SENTRA, a database of signal transduction proteins.

    Energy Technology Data Exchange (ETDEWEB)

    D' Souza, M.; Romine, M. F.; Maltsev, N.; Mathematics and Computer Science; PNNL

    2000-01-01

    SENTRA, available via URL http://wit.mcs.anl.gov/WIT2/Sentra/, is a database of proteins associated with microbial signal transduction. The database currently includes the classical two-component signal transduction pathway proteins and methyl-accepting chemotaxis proteins, but will be expanded to also include other classes of signal transduction systems that are modulated by phosphorylation or methylation reactions. Although the majority of database entries are from prokaryotic systems, eukaroytic proteins with bacterial-like signal transduction domains are also included. Currently SENTRA contains signal transduction proteins in 34 complete and almost completely sequenced prokaryotic genomes, as well as sequences from 243 organisms available in public databases (SWISS-PROT and EMBL). The analysis was carried out within the framework of the WIT2 system, which is designed and implemented to support genetic sequence analysis and comparative analysis of sequenced genomes.

  19. Preparation of nanoporous titania spherical nanoparticles

    Science.gov (United States)

    Shiba, Kota; Sato, Soh; Matsushita, Takayuki; Ogawa, Makoto

    2013-03-01

    Preparation of nanoporous titania particles from well-defined titania-octadecylamine (titania-ODA) hybrid spherical particles with 450 nm in size, which were prepared by the method reported previously (Chem. Commun., 2009, pp. 6851-6853 [39]; RSC Adv., 2012, vol. 2, pp. 1343-1349 [40]), was studied. ODA was removed by solvent extraction with acidic ethanol to obtain nanoporous titania particles and subsequent calcination led to the formation of nanoporous titania particles with the nanopore size ranging from 2 to 4 nm depending on the calcination temperature. The as-synthesized titania was amorphous and was transformed into anatase (at around 300 °C) and rutile (at around 600 °C) by the heat treatment. The phase transition behavior was discussed in comparison with that of as-synthesized titania-ODA particles without ODA removal. Spherical particles of titania-ODA hybrids with 70 nm in size were also transformed into nanoporous titania particles composed of anatase crystallites by the washing and calcination at 500 °C for 1 h.

  20. USE OF ATOMIC LAYER DEPOSITION OF FUNCTIONALIZATION OF NANOPOROUS BIOMATERIALS

    Energy Technology Data Exchange (ETDEWEB)

    Brigmon, R.; Narayan, R.; Adiga, S.; Pellin, M.; Curtiss, L.; Stafslien, S.; Chisholm, B.; Monteiro-Riviere, N.; Elam, J.

    2010-02-08

    Due to its chemical stability, uniform pore size, and high pore density, nanoporous alumina is being investigated for use in biosensing, drug delivery, hemodialysis, and other medical applications. In recent work, we have examined the use of atomic layer deposition for coating the surfaces of nanoporous alumina membranes. Zinc oxide coatings were deposited on nanoporous alumina membranes using atomic layer deposition. The zinc oxide-coated nanoporous alumina membranes demonstrated antimicrobial activity against Escherichia coli and Staphylococcus aureus bacteria. These results suggest that atomic layer deposition is an attractive technique for modifying the surfaces of nanoporous alumina membranes and other nanostructured biomaterials.

  1. ELECTROCHEMICAL PROPERTIES OF NANOPOROUS CARBON ELECTRODES

    Directory of Open Access Journals (Sweden)

    P.Nigu

    2002-01-01

    Full Text Available Electrical double layer and electrochemical characteristics at the nanoporous carbon | (C2H54NBF4 + acetonitrile interface have been studied by the cyclic voltammetry and impedance spectroscopy methods. The value of zero charge potential (0.23 V vs. SCE in H2O, the region of ideal polarizability and other characteristics have been established. Analysis of complex plane plots shows that the nanoporous carbon | x M (C2H54NBF4 + acetonitrile interface can be simulated by the equivalent circuit, in which the two parallel conduction parts in the solid and liquid phases are interconnected by the double layer capacitance in parallel with the complex admittance of hindered reaction of the charge transfer process. The values of the characteristic frequency depend on the electrolyte concentration and on the electrode potential, i.e. on the nature of ions adsorbed at the surface of nanoporous carbon electrode.

  2. Ion transport through a graphene nanopore

    CERN Document Server

    Hu, Guohui; Ghosal, Sandip; 10.1088/0957-4484/23/39/395501

    2013-01-01

    Molecular dynamics simulation is utilized to investigate the ionic transport of NaCl in solution through a graphene nanopore under an applied electric field. Results show the formation of concentration polarization layers in the vicinity of the graphene sheet. The non-uniformity of the ion distribution gives rise to an electric pressure which drives vortical motions in the fluid if the electric field is sufficiently strong to overcome the influence of viscosity and thermal fluctuations. The relative importance of hydrodynamic transport and thermal fluctuations in determining the pore conductivity is investigated. A second important effect that is observed is the mass transport of water through the nanopore, with an average velocity proportional to the applied voltage and independent of the pore diameter. The flux arises as a consequence of the asymmetry in the ion distribution with respect to reflection about the plane of the graphene sheet. The accumulation of liquid molecules in the vicinity of the nanopore...

  3. Tailored nanoporous gold for ultrahigh fluorescence enhancement.

    Science.gov (United States)

    Lang, X Y; Guan, P F; Fujita, T; Chen, M W

    2011-03-07

    We report molecular fluorescence enhancement of free-standing nanoporous gold in which the nanoporosity can be arbitrarily tailored by the combination of dealloying and electroless gold plating. The nanoporous gold fabricated by this facile method possesses unique porous structures with large gold ligaments and very small pores, and exhibits significant improvements in surface enhanced fluorescence as well as structure rigidity. It demonstrates that the confluence effect of improved quantum yield and excitation of fluorophores is responsible for the large fluorescence enhancement due to the near-field enhancement of nanoporous gold, which arises from the strong electromagnetic coupling between neighboring ligaments and the weakening of plasmon damping of the large ligaments because of the small pore size and large ligament size, respectively.

  4. Vibrational spectra of molecular fluids in nanopores

    Science.gov (United States)

    Arakcheev, V. G.; Morozov, V. B.

    2012-12-01

    Coherent anti-Stokes Raman spectroscopy (CARS) is applied for quantitative analysis of carbon dioxide phase composition in pores of nanoporous glass samples at nearcritical temperatures. Measurements of the 1388 1/cm Q-branch were made in a wide pressure range corresponding to coexistence of gas (gas-like), adsorbed and condensed phases within pores. At temperatures several degrees below the critical value, CARS spectra behavior is easy to interpret in terms of thermodynamic model of surface adsorption and capillary condensation. It allows estimating mass fractions of different phase components. Moreover, spectra measured at near critical temperatures 30.5 and 33°C have pronounced inhomogeneous shapes and indicate the presence of condensed phase in the volume of pores. The effect obviously reflects the fluid behaviour near the critical point in nanopores. Pores with smaller radii are filled with condensed phase at lower pressures. The analysis of the CARS spectra is informative for quantitative evaluation of phase composition in nanopores.

  5. Polyelectrolyte Threading through a Nanopore

    Directory of Open Access Journals (Sweden)

    Pai-Yi Hsiao

    2016-03-01

    Full Text Available Threading charged polymers through a nanopore, driven by electric fields E, is investigated by means of Langevin dynamics simulations. The mean translocation time 〈 τ 〉 is shown to follow a scaling law Nα, and the exponent α increases monotonically from 1.16 (4 to 1.40 (3 with E. The result is double-checked by the calculation of mean square displacement of translocation coordinate, which asserts a scaling behavior tβ (for t near τ with β complying with the relation αβ = 2. At a fixed chain length N, 〈τ〉 displayed a reciprocal scaling behavior E−1 in the weak and also in the strong fields, connected by a transition E−1.64(5 in the intermediate fields. The variations of the radius of gyration of chain and the positions of chain end are monitored during a translocation process; far-from-equilibrium behaviors are observed when the driving field is strong. A strong field can strip off the condensed ions on the chain when it passes the pore. The total charges of condensed ions are hence decreased. The studies for the probability and density distributions reveal that the monomers in the trans-region are gathered near the wall and form a pancake-like density profile with a hump cloud over it in the strong fields, due to fast translocation.

  6. Nanoporous polymers for hydrogen storage.

    Science.gov (United States)

    Germain, Jonathan; Fréchet, Jean M J; Svec, Frantisek

    2009-05-01

    The design of hydrogen storage materials is one of the principal challenges that must be met before the development of a hydrogen economy. While hydrogen has a large specific energy, its volumetric energy density is so low as to require development of materials that can store and release it when needed. While much of the research on hydrogen storage focuses on metal hydrides, these materials are currently limited by slow kinetics and energy inefficiency. Nanostructured materials with high surface areas are actively being developed as another option. These materials avoid some of the kinetic and thermodynamic drawbacks of metal hydrides and other reactive methods of storing hydrogen. In this work, progress towards hydrogen storage with nanoporous materials in general and porous organic polymers in particular is critically reviewed. Mechanisms of formation for crosslinked polymers, hypercrosslinked polymers, polymers of intrinsic microporosity, and covalent organic frameworks are discussed. Strategies for controlling hydrogen storage capacity and adsorption enthalpy via manipulation of surface area, pore size, and pore volume are discussed in detail.

  7. DNA translocations through solid-state plasmonic nanopores.

    Science.gov (United States)

    Nicoli, Francesca; Verschueren, Daniel; Klein, Misha; Dekker, Cees; Jonsson, Magnus P

    2014-12-10

    Nanopores enable label-free detection and analysis of single biomolecules. Here, we investigate DNA translocations through a novel type of plasmonic nanopore based on a gold bowtie nanoantenna with a solid-state nanopore at the plasmonic hot spot. Plasmonic excitation of the nanopore is found to influence both the sensor signal (nanopore ionic conductance blockade during DNA translocation) and the process that captures DNA into the nanopore, without affecting the duration time of the translocations. Most striking is a strong plasmon-induced enhancement of the rate of DNA translocation events in lithium chloride (LiCl, already 10-fold enhancement at a few mW of laser power). This provides a means to utilize the excellent spatiotemporal resolution of DNA interrogations with nanopores in LiCl buffers, which is known to suffer from low event rates. We propose a mechanism based on plasmon-induced local heating and thermophoresis as explanation of our observations.

  8. How effective is graphene nanopore geometry on DNA sequencing?

    CERN Document Server

    Satarifard, Vahid; Ejtehadi, Mohammad Reza

    2015-01-01

    In this paper we investigate the effects of graphene nanopore geometry on homopolymer ssDNA pulling process through nanopore using steered molecular dynamic (SMD) simulations. Different graphene nanopores are examined including axially symmetric and asymmetric monolayer graphene nanopores as well as five layer graphene polyhedral crystals (GPC). The pulling force profile, moving fashion of ssDNA, work done in irreversible DNA pulling and orientations of DNA bases near the nanopore are assessed. Simulation results demonstrate the strong effect of the pore shape as well as geometrical symmetry on free energy barrier, orientations and dynamic of DNA translocation through graphene nanopore. Our study proposes that the symmetric circular geometry of monolayer graphene nanopore with high pulling velocity can be used for DNA sequencing.

  9. Observation of ionic Coulomb blockade in nanopores

    Science.gov (United States)

    Feng, Jiandong; Liu, Ke; Graf, Michael; Dumcenco, Dumitru; Kis, Andras; di Ventra, Massimiliano; Radenovic, Aleksandra

    2016-08-01

    Emergent behaviour from electron-transport properties is routinely observed in systems with dimensions approaching the nanoscale. However, analogous mesoscopic behaviour resulting from ionic transport has so far not been observed, most probably because of bottlenecks in the controlled fabrication of subnanometre nanopores for use in nanofluidics. Here, we report measurements of ionic transport through a single subnanometre pore junction, and the observation of ionic Coulomb blockade: the ionic counterpart of the electronic Coulomb blockade observed for quantum dots. Our findings demonstrate that nanoscopic, atomically thin pores allow for the exploration of phenomena in ionic transport, and suggest that nanopores may also further our understanding of transport through biological ion channels.

  10. Monolithic aerogels with nanoporous crystalline phases

    Science.gov (United States)

    Daniel, Christophe; Guerra, Gaetano

    2015-05-01

    High porosity monolithic aerogels with nanoporous crystalline phases can be obtained from syndiotactic polystyrene and poly(2,6-dimethyl-1,4-phenylene)oxide thermoreversible gels by removing the solvent with supercritical CO2. The presence of crystalline nanopores in the aerogels based on these polymers allows a high uptake associated with a high selectivity of volatile organic compounds from vapor phase or aqueous solutions even at very low activities. The sorption and the fast kinetics make these materials particularly suitable as sorption medium to remove traces of pollutants from water and moist air.

  11. Nanoporous Gold: Fabrication, Characterization, and Applications

    Directory of Open Access Journals (Sweden)

    Michael L. Reed

    2009-12-01

    Full Text Available Nanoporous gold (np-Au has intriguing material properties that offer potential benefits for many applications due to its high specific surface area, well-characterized thiol-gold surface chemistry, high electrical conductivity, and reduced stiffness. The research on np-Au has taken place on various fronts, including advanced microfabrication and characterization techniques to probe unusual nanoscale properties and applications spanning from fuel cells to electrochemical sensors. Here, we provide a review of the recent advances in np-Au research, with special emphasis on microfabrication and characterization techniques. We conclude the paper with a brief outline of challenges to overcome in the study of nanoporous metals.

  12. Ultrafiltration by gyroid nanoporous polymer membranes

    DEFF Research Database (Denmark)

    Li, Li; Szewczykowski, Piotr Przemyslaw; Clausen, Lydia D.;

    2011-01-01

    Gyroid nanoporous cross-linked 1,2-polybutadiene membranes with uniform pores were developed for ultrafiltration applications. The gyroid porosity has the advantage of isotropic percolation with no need for structure pre-alignment. The effects of solvent and surface photo-hydrophilization on perm......Gyroid nanoporous cross-linked 1,2-polybutadiene membranes with uniform pores were developed for ultrafiltration applications. The gyroid porosity has the advantage of isotropic percolation with no need for structure pre-alignment. The effects of solvent and surface photo...

  13. Nanoporous thin film platform for biophotonic sensors

    Science.gov (United States)

    Alla, Suresh; Solanki, Rina; Mattley, Yvette D.; Dabhi, Harish; Shahriari, Mahmoud R.

    2009-02-01

    A Nanoporous glass matrix is developed to encapsulate molecular probes for monitoring important biological parameters such as DO. The hydrophobic nanoporous host matrix is designed and fabricated using room temperature sol gel technique. The doped sol gel is then coated on biocompatible self adhesive patches or directly coated on the biocontainers. We demonstrate the application of this technique in non-invasive monitoring DO as well as oxygen partial pressure in a closed fermentation process as well as in a cell culture plate during bacterial growth. Dynamic response of sensor, sensitivity and accuracy is also demonstrated in this paper.

  14. Method for making nanoporous hydrophobic coatings

    Science.gov (United States)

    Fan, Hongyou; Sun, Zaicheng

    2013-04-23

    A simple coating method is used to form nanoporous hydrophobic films that can be used as optical coatings. The method uses evaporation-induced self-assembly of materials. The coating method starts with a homogeneous solution comprising a hydrophobic polymer and a surfactant polymer in a selective solvent. The solution is coated onto a substrate. The surfactant polymer forms micelles with the hydrophobic polymer residing in the particle core when the coating is dried. The surfactant polymer can be dissolved and selectively removed from the separated phases by washing with a polar solvent to form the nanoporous hydrophobic film.

  15. Nanopore formation on Au coated pyramid under electron beam irradiations (plasmonic nanopore on pyramid

    Directory of Open Access Journals (Sweden)

    Seong Soo Choi

    2016-03-01

    Full Text Available There have been tremendous interests about the single molecule analysis using a sold-state nanopore. The solid-state nanopore can be fabricated either by drilling technique, or diffusion technique by using electron beam irradiations. The solid-state SiN nanopore device with electrical detection technique recently fabricated, however, the solid-state Au nanopore with optical detection technique can be better utilized as the next generation single molecule sensor. In this report, the nanometer size openings with its size less than 10 nm on the diffused membrane on the 200 nm Au pyramid were fabricated by using field emission scanning electron microscopy (FESEM electron beam irradiations, transmission electron microscopy (TEM, etc. After the sample was being kept under a room environment for several months, several Au (111 clusters with ~6 nm diameter formed via Ostwald ripening are observed using a high resolution TEM imaging. The nanopore with Au nanoclusters on the diffused membrane can be utilized as an optical nanopore device.

  16. Transduction of chemical into electrical energy.

    Science.gov (United States)

    Nachmansohn, D

    1976-01-01

    The paper recalls some fundamental notions, developed by Otto Meyerhof, which were used in the analysis of the transduction of chemical into mechanical energy during muscular contraction. These notions formed the basis of the approach to the analysis of the transduction of chemical into electrical energy, i.e., the very principle underlying nerve and muscle excitability and bioelectricity. Instrumental for this purpose was the use, since 1937, of electric organs of fish, a tissue highly specialized for bioelectrogenesis.

  17. Rapid resistome mapping using nanopore sequencing

    DEFF Research Database (Denmark)

    van der Helm, Eric; Imamovic, Lejla; Ellabaan, Mostafa M Hashim

    2017-01-01

    of bacterial infections. Yet, rapid workflows for resistome characterization are lacking. To address this challenge we developed the poreFUME workflow that deploys functional metagenomic selections and nanopore sequencing to resistome mapping. We demonstrate the approach by functionally characterizing the gut...

  18. Analysis of electrolyte transport through charged nanopores

    NARCIS (Netherlands)

    Peters, P.B.; Roij, van R.; Bazant, M.Z.; Biesheuvel, P.M.

    2016-01-01

    We revisit the classical problem of flow of electrolyte solutions through charged capillary nanopores or nanotubes as described by the capillary pore model (also called "space charge" theory). This theory assumes very long and thin pores and uses a one-dimensional flux-force formalism which relat

  19. Electrical pulse fabrication of graphene nanopores in electrolyte solution

    Energy Technology Data Exchange (ETDEWEB)

    Kuan, Aaron T.; Szalay, Tamas [School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138 (United States); Lu, Bo [Department of Physics, Harvard University, Cambridge, Massachusetts 02138 (United States); Xie, Ping [Oxford Nanopore Technologies, One Kendall Square, Cambridge, Massachusetts 02139 (United States); Golovchenko, Jene A., E-mail: golovchenko@physics.harvard.edu [School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138 (United States); Department of Physics, Harvard University, Cambridge, Massachusetts 02138 (United States)

    2015-05-18

    Nanopores in graphene membranes can potentially offer unprecedented spatial resolution for single molecule sensing, but their fabrication has thus far been difficult, poorly scalable, and prone to contamination. We demonstrate an in-situ fabrication method that nucleates and controllably enlarges nanopores in electrolyte solution by applying ultra-short, high-voltage pulses across the graphene membrane. This method can be used to rapidly produce graphene nanopores with subnanometer size accuracy in an apparatus free of nanoscale beams or tips.

  20. Study of polymer molecules and conformations with a nanopore

    Science.gov (United States)

    Golovchenko, Jene A.; Li, Jiali; Stein, Derek; Gershow, Marc H.

    2010-12-07

    The invention features methods for evaluating the conformation of a polymer, for example, for determining the conformational distribution of a plurality of polymers and to detect binding or denaturation events. The methods employ a nanopore which the polymer, e.g., a nucleic acid, traverses. As the polymer traverses the nanopore, measurements of transport properties of the nanopore yield data on the conformation of the polymer.

  1. Nanopore-based sequencing and detection of nucleic acids.

    Science.gov (United States)

    Ying, Yi-Lun; Zhang, Junji; Gao, Rui; Long, Yi-Tao

    2013-12-09

    Nanopore-based techniques, which mimic the functions of natural ion channels, have attracted increasing attention as unique methods for single-molecule detection. The technology allows the real-time, selective, high-throughput analysis of nucleic acids through both biological and solid-state nanopores. In this Minireview, the background and latest progress in nanopore-based sequencing and detection of nucleic acids are summarized, and light is shed on a novel platform for nanopore-based detection. Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  2. Nanopore-based Fourth-generation DNA Sequencing Technology

    Institute of Scientific and Technical Information of China (English)

    Yanxiao Feng; Yuechuan Zhang; Cuifeng Ying; Deqiang Wang; Chunlei Du

    2015-01-01

    Nanopore-based sequencers, as the fourth-generation DNA sequencing technology, have the potential to quickly and reliably sequence the entire human genome for less than $1000, and possibly for even less than$100. The single-molecule techniques used by this technology allow us to further study the interaction between DNA and protein, as well as between protein and protein. Nanopore analysis opens a new door to molecular biology investigation at the single-molecule scale. In this article, we have reviewed academic achievements in nanopore technology from the past as well as the latest advances, including both biological and solid-state nanopores, and discussed their recent and potential applications.

  3. Detector Unit

    CERN Multimedia

    1960-01-01

    Original detector unit of the Instituut voor Kernfysisch Onderzoek (IKO) BOL project. This detector unit shows that silicon detectors for nuclear physics particle detection were already developed and in use in the 1960's in Amsterdam. Also the idea of putting 'strips' onto the silicon for high spatial resolution of a particle's impact on the detector were implemented in the BOL project which used 64 of these detector units. The IKO BOL project with its silicon particle detectors was designed, built and operated from 1965 to roughly 1977. Detector Unit of the BOL project: These detectors, notably the ‘checkerboard detector’, were developed during the years 1964-1968 in Amsterdam, The Netherlands, by the Natuurkundig Laboratorium of the N.V. Philips Gloeilampen Fabrieken. This was done in close collaboration with the Instituut voor Kernfysisch Onderzoek (IKO) where the read-out electronics for their use in the BOL Project was developed and produced.

  4. The cornucopia of intestinal chemosensory transduction

    Directory of Open Access Journals (Sweden)

    Paul P Bertrand

    2009-12-01

    Full Text Available The chemosensory transduction mechanisms that the gastrointestinal (GI tract uses to detect chemical and nutrient stimuli are poorly understood. The GI tract is presented with a wide variety of stimuli including potentially harmful chemicals or toxins as well as 'normal' stimuli including nutrients, bacteria and mechanical forces. Sensory transduction is at its simplest the conversion of these stimuli into a neural code in afferent nerves. Much of the information encoded is used by the enteric nervous system (ENS to generate local reflexes while complementary information is sent to the central nervous system (CNS via afferents or by release of hormones to affect behaviour. This review focuses on the chemosensory transduction mechanisms present in the GI tract. It examines the expression and localisation of the machinery for chemosensory transduction. It summarises the types of cells which might be involved in detecting stimuli and releasing neuroactive transmitters. Finally, it highlights the idea that chemosensory transduction mechanisms in the GI tract utilise many overlapping and complementary mechanisms for detecting and transducing stimuli into reflex action.

  5. Infrared detectors

    CERN Document Server

    Rogalski, Antonio

    2010-01-01

    This second edition is fully revised and reorganized, with new chapters concerning third generation and quantum dot detectors, THz detectors, cantilever and antenna coupled detectors, and information on radiometry and IR optics materials. Part IV concerning focal plane arrays is significantly expanded. This book, resembling an encyclopedia of IR detectors, is well illustrated and contains many original references … a really comprehensive book.-F. Sizov, Institute of Semiconductor Physics, National Academy of Sciences, Kiev, Ukraine

  6. Bioinformatics analyses for signal transduction networks

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Research in signaling networks contributes to a deeper understanding of organism living activities. With the development of experimental methods in the signal transduction field, more and more mechanisms of signaling pathways have been discovered. This paper introduces such popular bioin-formatics analysis methods for signaling networks as the common mechanism of signaling pathways and database resource on the Internet, summerizes the methods of analyzing the structural properties of networks, including structural Motif finding and automated pathways generation, and discusses the modeling and simulation of signaling networks in detail, as well as the research situation and tendency in this area. Now the investigation of signal transduction is developing from small-scale experiments to large-scale network analysis, and dynamic simulation of networks is closer to the real system. With the investigation going deeper than ever, the bioinformatics analysis of signal transduction would have immense space for development and application.

  7. Thermodynamics phase changes of nanopore fluids

    KAUST Repository

    Islam, Akand W.

    2015-07-01

    The van der Waals (vdW) equation (Eq.) is modified to describe thermodynamic of phase behavior of fluids confined in nanopore. Our aim is to compute pressures exerted by the fluid molecules and to investigate how they change due to pore proximity by assuming the pore wall is inert. No additional scaling of model parameters is imposed and original volume and energy parameters are used in the calculations. Our results clearly show the phase changes due to confinement. The critical shifts of temperatures and pressures are in good agreement compared to the laboratory data and molecular simulation. Peng-Robinson (PR) equation-of-state (EOS) has resulted in different effect than the vdW. This work delivers insights into the nature of fluid behavior in extremely low-permeability nanoporous media, especially in the tight shale reservoirs, below the critical temperatures. © 2015 Elsevier B.V.

  8. Nanoporous polystyrene fibers for oil spill cleanup.

    Science.gov (United States)

    Lin, Jinyou; Shang, Yanwei; Ding, Bin; Yang, Jianmao; Yu, Jianyong; Al-Deyab, Salem S

    2012-02-01

    The development of oil sorbents with high sorption capacity, low cost, scalable fabrication, and high selectivity is of great significance for water environmental protection, especially for oil spillage on seawater. In this work, we report nanoporous polystyrene (PS) fibers prepared via a one-step electrospinning process used as oil sorbents for oil spill cleanup. The oleophilic-hydrophobic PS oil sorbent with highly porous structures shows a motor oil sorption capacity of 113.87 g/g, approximately 3-4 times that of natural sorbents and nonwoven polypropylene fibrous mats. Additionally, the sorbents also exhibit a relatively high sorption capacity for edible oils, such as bean oil (111.80 g/g) and sunflower seed oil (96.89 g/g). The oil sorption mechanism of the PS sorbent and the sorption kinetics were investigated. Our nanoporous material has great potential for use in wastewater treatment, oil accident remediation and environmental protection.

  9. FABRICATION AND CHARACTERATION OF NANOPOROUS SILICA FILM

    Institute of Scientific and Technical Information of China (English)

    殷明志; 张良莹; 姚熹

    2003-01-01

    Colloidal silica sol is formed by a novel hydrolyzing procedure of tetraethyl-orthosilicate(TEOS) catalyzing with NH3*H2O in aqueous mediums. Glycerol, combining with the hydrolyzed intermediates of TEOS, controls growing of the silica particles; poly(vinyl-vinyl alcohol makes the colloidal silica sol with polymeric structure and spinning, thermal strain makes the gel silica film changed into a nanoporous structure with diameter ranging 50-150 nm. Morphologies of the nanoporous silica film have been characterized; the porosities (%) is 32-64; the average dielectric constant at 1MHz region is 2.0 and 2.1; the thermal conductivity is less than 0.8. Chemical mechanism of the sol-gel process is discussed.

  10. Ordered arrays of nanoporous gold nanoparticles

    Directory of Open Access Journals (Sweden)

    Dong Wang

    2012-09-01

    Full Text Available A combination of a “top-down” approach (substrate-conformal imprint lithography and two “bottom-up” approaches (dewetting and dealloying enables fabrication of perfectly ordered 2-dimensional arrays of nanoporous gold nanoparticles. The dewetting of Au/Ag bilayers on the periodically prepatterned substrates leads to the interdiffusion of Au and Ag and the formation of an array of Au–Ag alloy nanoparticles. The array of alloy nanoparticles is transformed into an array of nanoporous gold nanoparticles by a following dealloying step. Large areas of this new type of material arrangement can be realized with this technique. In addition, this technique allows for the control of particle size, particle spacing, and ligament size (or pore size by varying the period of the structure, total metal layer thickness, and the thickness ratio of the as-deposited bilayers.

  11. Surface chemistry driven actuation in nanoporous gold

    Energy Technology Data Exchange (ETDEWEB)

    Biener, J; Wittstock, A; Zepeda-Ruiz, L; Biener, M M; Zielasek, V; Kramer, D; Viswanath, R N; Weissmuller, J; Baumer, M; Hamza, A V

    2008-04-14

    Although actuation in biological systems is exclusively powered by chemical energy, this concept has not been realized in man-made actuator technologies, as these rely on generating heat or electricity first. Here, we demonstrate that surface-chemistry driven actuation can be realized in high surface area materials such as nanoporous gold. For example, we achieve reversible strain amplitudes in the order of a few tenths of a percent by alternating exposure of nanoporous Au to ozone and carbon monoxide. The effect can be explained by adsorbate-induced changes of the surface stress, and can be used to convert chemical energy directly into a mechanical response thus opening the door to surface-chemistry driven actuator and sensor technologies.

  12. Broadband Spectroscopy of Nanoporous-Gold Promoter

    Directory of Open Access Journals (Sweden)

    S. K. Nakatani

    2014-02-01

    Full Text Available The efficiency of UV photocatalysis on TiO2 particles was increased by mixing TiO2 particles with nanoporous gold (NPG with pore diameters of 10–40 nm. This means that NPG acts as a promoter in the photocatalytic reaction of TiO2. Broadband spectroscopic results from millimeter wave to ultra violet of NPG membrane are discussed to estimate plasmonic effect on the catalysis.

  13. Purinergic mechanosensory transduction and visceral pain

    Directory of Open Access Journals (Sweden)

    Burnstock Geoffrey

    2009-11-01

    Full Text Available Abstract In this review, evidence is presented to support the hypothesis that mechanosensory transduction occurs in tubes and sacs and can initiate visceral pain. Experimental evidence for this mechanism in urinary bladder, ureter, gut, lung, uterus, tooth-pulp and tongue is reviewed. Potential therapeutic strategies are considered for the treatment of visceral pain in such conditions as renal colic, interstitial cystitis and inflammatory bowel disease by agents that interfere with mechanosensory transduction in the organs considered, including P2X3 and P2X2/3 receptor antagonists that are orally bioavailable and stable in vivo and agents that inhibit or enhance ATP release and breakdown.

  14. Gaseous Detectors: Charged Particle Detectors - Particle Detectors and Detector Systems

    CERN Document Server

    Hilke, H J

    2011-01-01

    Gaseous Detectors in 'Charged Particle Detectors - Particle Detectors and Detector Systems', part of 'Landolt-Börnstein - Group I Elementary Particles, Nuclei and Atoms: Numerical Data and Functional Relationships in Science and Technology, Volume 21B1: Detectors for Particles and Radiation. Part 1: Principles and Methods'. This document is part of Part 1 'Principles and Methods' of Subvolume B 'Detectors for Particles and Radiation' of Volume 21 'Elementary Particles' of Landolt-Börnstein - Group I 'Elementary Particles, Nuclei and Atoms'. It contains the Subsection '3.1.2 Gaseous Detectors' of Section '3.1 Charged Particle Detectors' of Chapter '3 Particle Detectors and Detector Systems' with the content: 3.1.2 Gaseous Detectors 3.1.2.1 Introduction 3.1.2.2 Basic Processes 3.1.2.2.1 Gas ionization by charged particles 3.1.2.2.1.1 Primary clusters 3.1.2.2.1.2 Cluster size distribution 3.1.2.2.1.3 Total number of ion pairs 3.1.2.2.1.4 Dependence of energy deposit on particle velocity 3.1.2.2.2 Transport of...

  15. Tuneable graphene nanopores for single biomolecule detection

    Science.gov (United States)

    Al-Dirini, Feras; Mohammed, Mahmood A.; Hossain, Md Sharafat; Hossain, Faruque M.; Nirmalathas, Ampalavanapillai; Skafidas, Efstratios

    2016-05-01

    Solid-state nanopores are promising candidates for next generation DNA and protein sequencing. However, once fabricated, such devices lack tuneability, which greatly restricts their biosensing capabilities. Here we propose a new class of solid-state graphene-based nanopore devices that exhibit a unique capability of self-tuneability, which is used to control their conductance, tuning it to levels comparable to the changes caused by the translocation of a single biomolecule, and hence, enabling high detection sensitivities. Our presented quantum simulation results suggest that the smallest amino acid, glycine, when present in water and in an aqueous saline solution can be detected with high sensitivity, up to a 90% change in conductance. Our results also suggest that passivating the device with nitrogen, making it an n-type device, greatly enhances its sensitivity, and makes it highly sensitive to not only the translocation of a single biomolecule, but more interestingly to intramolecular electrostatics within the biomolecule. Sensitive detection of the carboxyl group within the glycine molecule, which carries a charge equivalent to a single electron, is achieved with a conductance change that reaches as high as 99% when present in an aqueous saline solution. The presented findings suggest that tuneable graphene nanopores, with their capability of probing intramolecular electrostatics, could pave the way towards a new generation of single biomolecule detection devices.

  16. Conical nanopore membranes. Preparation and transport properties.

    Science.gov (United States)

    Li, Naichao; Yu, Shufang; Harrell, C Chad; Martin, Charles R

    2004-04-01

    We have been investigating applications of nanopore membranes in analytical chemistry-specifically in membrane-based bioseparations, in electroanalytical chemistry, and in the development of new approaches to biosensor design. Membranes that have conically shaped pores (as opposed to the more conventional cylindrical shape) may offer some advantages for these applications. We describe here a simple plasma-etch method that converts cylindrical nanopores in track-etched polymeric membranes into conically shaped pores. This method allows for control of the shape of the resulting conical nanopores. For example, the plasma-etched pores may be cylindrical through most of the membrane thickness blossoming into cones at one face of the membrane (trumpet-shaped), or they may be nearly perfect cones. The key advantage of the conical pore shape is a dramatic enhancement in the rate of transport through the membrane, relative to an analogous cylindrical pore membrane. We demonstrate this here by measuring the ionic resistances of the plasma-etched conical pore membranes.

  17. Water adsorption in ion-bearing nanopores

    Science.gov (United States)

    Lakatos, G.; Patey, G. N.

    2007-01-01

    Grand canonical Monte Carlo simulations are used to examine the adsorption of water into cylindrical nanopores containing single ions. The isotherms for water adsorbing into nanopores with radii of 0.44, 0.54, 0.64, and 0.74nm and containing Na+, K+, Ca2+, Cl-, or F- at 298K are computed. In all cases the nanopores are found to fill at reservoir chemical potentials below the chemical potential of saturated water vapor at 298K. The threshold chemical potential is found to be sensitive to both the size of the channel and the ion species, with the anion-bearing pores filling at lower chemical potentials. Additionally, the filling threshold chemical potential is found to decrease as the radius of the pores is decreased. Pores with K+ and Cl- are compared, and the Cl- pores are found to exhibit higher water densities in the filled states and a more energetically favorable water structure while yielding lower per particle entropies. Sample simulation configurations are also examined and indicate that at low chemical potentials, the adsorbed water forms a cluster around the ion. Finally, the influence of the choice of water model on the adsorption isotherms is examined.

  18. Nanopore DNA sequencing and epigenetic detection with a MspA nanopore

    Science.gov (United States)

    Laszlo, Andrew H.

    DNA forms the molecular basis for all known life. Widespread DNA sequencing has the potential to revolutionize healthcare and our understanding of the life sciences. Sequencing has already had a profound effect on our understanding of the molecular basis of life and underpinnings of disease. Current DNA sequencing technologies require costly reagents, can sequence only short DNA strands, and take too long to complete entire genomes. Furthermore, the required DNA sample size limits the types of experiments that can be run. For instance sequencing single cells is extremely difficult. New technologies are key to making DNA sequencing as cheap and accessible as possible and for making new experiments possible. One such new technology is nanopore sequencing. In nanopore sequencing, a thin membrane is used to divide a salt solution into two wells: cis and trans. This membrane contains a single nanometer sized hole that forms the only electrical connection between the two wells. When a voltage is applied across the membrane, ion current flows through the nanopore. This ion current is the primary signal for nanopore sequencing. DNA is negatively charged and can be pulled into the pore. When DNA is pulled into the pore, it occludes the pore and reduces the ion current that can pass through the pore. Individual DNA nucleotides along the DNA strand block the pore to varying degrees. One can measure the degree to which the pore is blocked as DNA passes through the pore and use the ion current signal to read off the DNA sequence. This thesis chronicles recent advances in the Gundlach laboratory in which I have played a leading role. It describes our work testing the biological nanopore Mycobacterium smegmatis porin A (MspA) for nanopore sequencing. The thesis consists of five chapters and three appendices which contain supplemental information for Chapters 2, 3, and 4. Chapter 1 begins with some motivation and defines the current challenges in DNA sequencing. I also introduce

  19. Single Nanoparticle Translocation Through Chemically Modified Solid Nanopore

    Science.gov (United States)

    Tan, Shengwei; Wang, Lei; Liu, Hang; Wu, Hongwen; Liu, Quanjun

    2016-02-01

    The nanopore sensor as a high-throughput and low-cost technology can detect single nanoparticle in solution. In the present study, the silicon nitride nanopores were fabricated by focused Ga ion beam (FIB), and the surface was functionalized with 3-aminopropyltriethoxysilane to change its surface charge density. The positively charged nanopore surface attracted negatively charged nanoparticles when they were in the vicinity of the nanopore. And, nanoparticle translocation speed was slowed down to obtain a clear and deterministic signal. Compared with previous studied small nanoparticles, the electrophoretic translocation of negatively charged polystyrene (PS) nanoparticles (diameter ~100 nm) was investigated in solution using the Coulter counter principle in which the time-dependent nanopore current was recorded as the nanoparticles were driven across the nanopore. A linear dependence was found between current drop and biased voltage. An exponentially decaying function ( t d ~ e -v/v0 ) was found between the duration time and biased voltage. The interaction between the amine-functionalized nanopore wall and PS microspheres was discussed while translating PS microspheres. We explored also translocations of PS microspheres through amine-functionalized solid-state nanopores by varying the solution pH (5.4, 7.0, and 10.0) with 0.02 M potassium chloride (KCl). Surface functionalization showed to provide a useful step to fine-tune the surface property, which can selectively transport molecules or particles. This approach is likely to be applied to gene sequencing.

  20. Effect of flow rate on diameter of electrospun nanoporous fibers

    Directory of Open Access Journals (Sweden)

    Tang Xiao-Peng

    2014-01-01

    Full Text Available The effect of flow rate on the diameter of the charged jet in the electrospinning process is studied theoretically. The obtained theoretical results offer in-depth physical understanding and mechanism of nanoporous fibers. It also reveals that the morphology and diameter of nanoporous microspheres can be controlled by the flow rate.

  1. UV patterned nanoporous solid-liquid core waveguides

    DEFF Research Database (Denmark)

    Gopalakrishnan, Nimi; Sagar, Kaushal Shashikant; Christiansen, Mads Brøkner;

    2010-01-01

    Nanoporous Solid-Liquid core waveguides were prepared by UV induced surface modification of hydrophobic nanoporous polymers. With this method, the index contrast (delta n = 0.20) is a result of selective water infiltration. The waveguide core is defined by UV light, rendering the exposed part...

  2. Energy transduction in lactic acid bacteria

    NARCIS (Netherlands)

    Poolman, Bert

    In the discovery of some general principles of energy transduction, lactic acid bacteria have played an important role. In this review, the energy transducing processes of lactic acid bacteria are discussed with the emphasis on the major developments of the past 5 years. This work not only includes

  3. Inhibitors targeting two-component signal transduction.

    Science.gov (United States)

    Watanabe, Takafumi; Okada, Ario; Gotoh, Yasuhiro; Utsumi, Ryutaro

    2008-01-01

    A two-component signal transduction system (TCS) is an attractive target for antibacterial agents. In this chapter, we review the TCS inhibitors developed during the past decade and introduce novel drug discovery systems to isolate the inhibitors of the YycG/YycF system, an essential TCS for bacterial growth, in an effort to develop a new class of antibacterial agents.

  4. Nanoparticle mechanics: deformation detection via nanopore resistive pulse sensing

    Science.gov (United States)

    Darvish, Armin; Goyal, Gaurav; Aneja, Rachna; Sundaram, Ramalingam V. K.; Lee, Kidan; Ahn, Chi Won; Kim, Ki-Bum; Vlahovska, Petia M.; Kim, Min Jun

    2016-07-01

    Solid-state nanopores have been widely used in the past for single-particle analysis of nanoparticles, liposomes, exosomes and viruses. The shape of soft particles, particularly liposomes with a bilayer membrane, can greatly differ inside the nanopore compared to bulk solution as the electric field inside the nanopores can cause liposome electrodeformation. Such deformations can compromise size measurement and characterization of particles, but are often neglected in nanopore resistive pulse sensing. In this paper, we investigated the deformation of various liposomes inside nanopores. We observed a significant difference in resistive pulse characteristics between soft liposomes and rigid polystyrene nanoparticles especially at higher applied voltages. We used theoretical simulations to demonstrate that the difference can be explained by shape deformation of liposomes as they translocate through the nanopores. Comparing our results with the findings from electrodeformation experiments, we demonstrated that the rigidity of liposomes can be qualitatively compared using resistive pulse characteristics. This application of nanopores can provide new opportunities to study the mechanics at the nanoscale, to investigate properties of great value in fundamental biophysics and cellular mechanobiology, such as virus deformability and fusogenicity, and in applied sciences for designing novel drug/gene delivery systems.Solid-state nanopores have been widely used in the past for single-particle analysis of nanoparticles, liposomes, exosomes and viruses. The shape of soft particles, particularly liposomes with a bilayer membrane, can greatly differ inside the nanopore compared to bulk solution as the electric field inside the nanopores can cause liposome electrodeformation. Such deformations can compromise size measurement and characterization of particles, but are often neglected in nanopore resistive pulse sensing. In this paper, we investigated the deformation of various

  5. Nanopore formation in neuroblastoma cells following ultrashort electric pulse exposure

    Science.gov (United States)

    Roth, Caleb C.; Payne, Jason A.; Wilmink, Gerald J.; Ibey, Bennett L.

    2011-03-01

    Ultrashort or nanosecond electrical pulses (USEP) cause repairable damage to the plasma membranes of cells through formation of nanopores. These nanopores are able to pass small ions such as sodium, calcium, and potassium, but remain impermeable to larger molecules like trypan blue and propidium iodide. What remains uncertain is whether generation of nanopores by ultrashort electrical pulses can inhibit action potentials in excitable cells. In this paper, we explored the sensitivity of excitable cells to USEP using Calcium Green AM 1 ester fluorescence to measure calcium uptake indicative of nanopore formation in the plasma membrane. We determined the threshold for nanopore formation in neuroblastoma cells for three pulse parameters (amplitude, pulse width, and pulse number). Measurement of such thresholds will guide future studies to determine if USEP can inhibit action potentials without causing irreversible membrane damage.

  6. A Protein Nanopore-Based Approach for Bacteria Sensing

    Science.gov (United States)

    Apetrei, Aurelia; Ciuca, Andrei; Lee, Jong-kook; Seo, Chang Ho; Park, Yoonkyung; Luchian, Tudor

    2016-11-01

    We present herein a first proof of concept demonstrating the potential of a protein nanopore-based technique for real-time detection of selected Gram-negative bacteria ( Pseudomonas aeruginosa or Escherichia coli) at a concentration of 1.2 × 108 cfu/mL. The anionic charge on the bacterial outer membrane promotes the electrophoretically driven migration of bacteria towards a single α-hemolysin nanopore isolated in a lipid bilayer, clamped at a negative electric potential, and followed by capture at the nanopore's mouth, which we found to be described according to the classical Kramers' theory. By using a specific antimicrobial peptide as a putative molecular biorecognition element for the bacteria used herein, we suggest that the detection system can combine the natural sensitivity of the nanopore-based sensing techniques with selective biological recognition, in aqueous samples, and highlight the feasibility of the nanopore-based platform to provide portable, sensitive analysis and monitoring of bacterial pathogens.

  7. Surface effects on the mechanical properties of nanoporous materials

    Energy Technology Data Exchange (ETDEWEB)

    Xia Re [School of Power and Mechanical Engineering, Wuhan University, Wuhan 430072 (China); Li Xide; Feng Xiqiao [AML, Department of Engineering Mechanics, Tsinghua University, Beijing 100084 (China); Qin Qinghua [School of Engineering, Australian National University, Canberra, ACT 0200 (Australia); Liu Jianlin, E-mail: fengxq@tsinghua.edu.cn [Department of Engineering Mechanics, China University of Petroleum, Qingdao 266555 (China)

    2011-07-01

    Using the theory of surface elasticity, we investigate the mechanical properties of nanoporous materials. The classical theory of porous materials is modified to account for surface effects, which become increasingly important as the characteristic sizes of microstructures shrink to nanometers. First, a refined Timoshenko beam model is presented to predict the effective elastic modulus of nanoporous materials. Then the surface effects on the elastic microstructural buckling behavior of nanoporous materials are examined. In particular, nanoporous gold is taken as an example to illustrate the application of the proposed model. The results reveal that both the elastic modulus and the critical buckling behavior of nanoporous materials exhibit a distinct dependence on the characteristic sizes of microstructures, e.g. the average ligament width.

  8. Hydrophilic and size-controlled graphene nanopores for protein detection

    Science.gov (United States)

    Goyal, Gaurav; Bok Lee, Yong; Darvish, Armin; Ahn, Chi Won; Kim, Min Jun

    2016-12-01

    This paper describes a general approach for transferring clean single-layer graphene onto silicon nitride nanopore devices and the use of the electron beam of a transmission electron microscope (TEM) to drill size-controlled nanopores in freely suspended graphene. Besides nanopore drilling, we also used the TEM to heal and completely close the unwanted secondary holes formed by electron beam damage during the drilling process. We demonstrate electron beam assisted shrinking of irregularly shaped 40-60 nm pores down to 2 nm, exhibiting an exquisite control of graphene nanopore diameter. Our fabrication workflow also rendered graphene nanopores hydrophilic, allowing easy wetting and use of the pores for studying protein translocation and protein-protein interaction with a high signal to noise ratio.

  9. Pixel Detectors

    OpenAIRE

    Wermes, Norbert

    2005-01-01

    Pixel detectors for precise particle tracking in high energy physics have been developed to a level of maturity during the past decade. Three of the LHC detectors will use vertex detectors close to the interaction point based on the hybrid pixel technology which can be considered the state of the art in this field of instrumentation. A development period of almost 10 years has resulted in pixel detector modules which can stand the extreme rate and timing requirements as well as the very harsh...

  10. Integrated solid-state nanopore platform for nanopore fabrication via dielectric breakdown, DNA-speed deceleration and noise reduction

    Science.gov (United States)

    Goto, Yusuke; Yanagi, Itaru; Matsui, Kazuma; Yokoi, Takahide; Takeda, Ken-Ichi

    2016-08-01

    The practical use of solid-state nanopores for DNA sequencing requires easy fabrication of the nanopores, reduction of the DNA movement speed and reduction of the ionic current noise. Here, we report an integrated nanopore platform with a nanobead structure that decelerates DNA movement and an insulating polyimide layer that reduces noise. To enable rapid nanopore fabrication, we introduced a controlled dielectric breakdown (CDB) process into our system. DNA translocation experiments revealed that single nanopores were created by the CDB process without sacrificing performance in reducing DNA movement speed by up to 10 μs/base or reducing noise up to 600 pArms at 1 MHz. Our platform provides the essential components for proceeding to the next step in the process of DNA sequencing.

  11. FIST: a sensory domain for diverse signal transduction pathways in prokaryotes and ubiquitin signaling in eukaryotes

    Energy Technology Data Exchange (ETDEWEB)

    Borziak, Kirill [ORNL; Jouline, Igor B [ORNL

    2007-01-01

    Motivation: Sensory domains that are conserved among Bacteria, Archaea and Eucarya are important detectors of common signals detected by living cells. Due to their high sequence divergence, sensory domains are difficult to identify. We systematically look for novel sensory domains using sensitive profile-based searches initi-ated with regions of signal transduction proteins where no known domains can be identified by current domain models. Results: Using profile searches followed by multiple sequence alignment, structure prediction, and domain architecture analysis, we have identified a novel sensory domain termed FIST, which is present in signal transduction proteins from Bacteria, Archaea and Eucarya. Remote similarity to a known ligand-binding fold and chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids.

  12. Metal Detectors.

    Science.gov (United States)

    Harrington-Lueker, Donna

    1992-01-01

    Schools that count on metal detectors to stem the flow of weapons into the schools create a false sense of security. Recommendations include investing in personnel rather than hardware, cultivating the confidence of law-abiding students, and enforcing discipline. Metal detectors can be quite effective at afterschool events. (MLF)

  13. Optical Detectors

    Science.gov (United States)

    Tabbert, Bernd; Goushcha, Alexander

    Optical detectors are applied in all fields of human activities from basic research to commercial applications in communication, automotive, medical imaging, homeland security, and other fields. The processes of light interaction with matter described in other chapters of this handbook form the basis for understanding the optical detectors physics and device properties.

  14. Signal transduction immunohistochemistry - Methods and protocols

    Directory of Open Access Journals (Sweden)

    CarloAlberto Redi

    2011-11-01

    Full Text Available Alexander E. Kalyuzhny statement that immunohistochemical detection of labile, low abundance and short-lived signal transduction molecules appears to be a very challenging task actually captures the same reader’s feeling. Each of us daily using immunohistochemical protocols to reveal targets either useful for research or diagnostic aims will surely wonder by which tricky techniques it is possible to overcome the preservation and unmasking of those labile antigens involved in signal transduction. Well, by seventheen chapters grouped in five parts Prof. Alexander E. Kalyuzhny is presenting an invaluable technical and methodological source of hints to satisfy our needs: to overcome troubleshottings if we are already in the field or to orientate those entering the field....

  15. Energy Harvesting By Optimized Piezo Transduction Mechanism

    CERN Document Server

    Boban, Bijo; Satheesh, U; Devaprakasam, D

    2014-01-01

    We report generation of electrical energy from nonlinear mechanical noises available in the ambient environment using optimized piezo transduction mechanisms. Obtaining energy from an ambient vibration has been attractive for remotely installed standalone microsystems and devices. The mechanical noises in the ambient environment can be converted to electrical energy by a piezo strip based on the principle of piezoelectric effect. In this work, we have designed and developed a standalone energy harvesting module based on piezo transduction mechanisms. Using this designed module we harvested noise energy and stored electrical energy in a capacitor. Using NI-PXI workstation with a LabVIEW programming, the output voltage of the piezo strip and voltage of the capacitor were measured and monitored. In this paper we discuss about the design, development, implementation, performance and characteristics of the energy harvesting module.

  16. Super-sensitive Molecule-hugging Graphene Nanopores

    CERN Document Server

    Garaj, Slaven; Branton, Daniel; Golovchenko, Jene A

    2012-01-01

    Longitudinal resolution and lateral sensitivity are decisive characteristics that determine the suitability of a nanopore sensor for sequencing a strand of DNA as well as other important polymers. Previous modeling of DNA induced ionic current blockades in single atom thick graphene nanopores has shown these nanopores to have sufficient longitudinal resolution to distinguish individual nucleobases along the length of a DNA molecule. Here we experimentally focus on the sensitivity to small changes in DNA diameter that can be discerned with graphene nanopores. We show that remarkably large sensitivities (0.5 nA/A)are obtained when the nanopore is tailored to have a diameter close to that of the polymer of interest. Our results have been obtained with double-stranded DNA (dsDNA). Smaller graphene nanopores that can be tuned to the diameter of single-stranded DNA (ssDNA) for sequencing have only recently been demonstrated. Our results indicate that nanopore sensors based on such pores will provide excellent resol...

  17. Meso-/Nanoporous Semiconducting Metal Oxides for Gas Sensor Applications

    Directory of Open Access Journals (Sweden)

    Nguyen Duc Hoa

    2015-01-01

    Full Text Available Development and/or design of new materials and/or structures for effective gas sensor applications with fast response and high sensitivity, selectivity, and stability are very important issues in the gas sensor technology. This critical review introduces our recent progress in the development of meso-/nanoporous semiconducting metal oxides and their applications to gas sensors. First, the basic concepts of resistive gas sensors and the recent synthesis of meso-/nanoporous metal oxides for gas sensor applications are introduced. The advantages of meso-/nanoporous metal oxides are also presented, taking into account the crystallinity and ordered/disordered porous structures. Second, the synthesis methods of meso-/nanoporous metal oxides including the soft-template, hard-template, and temple-free methods are introduced, in which the advantages and disadvantages of each synthetic method are figured out. Third, the applications of meso-/nanoporous metal oxides as gas sensors are presented. The gas nanosensors are designed based on meso-/nanoporous metal oxides for effective detection of toxic gases. The sensitivity, selectivity, and stability of the meso-/nanoporous gas nanosensors are also discussed. Finally, some conclusions and an outlook are presented.

  18. Optical racetrack resonator transduction of nanomechanical cantilevers.

    Science.gov (United States)

    Sauer, V T K; Diao, Z; Freeman, M R; Hiebert, W K

    2014-02-07

    Optomechanical transduction has demonstrated its supremacy in probing nanomechanical displacements. In order to apply nano-optomechanical systems (NOMS) as force and mass sensors, knowledge about the transduction responsivity (i.e. the change in measured optical transmission with nanomechanical displacement) and its tradeoffs with system design is paramount. We compare the measured responsivities of NOMS devices with varying length, optomechanical coupling strength gom, and optical cavity properties. Cantilever beams 1.5 to 5 μm long are fabricated 70 to 160 nm from a racetrack resonator optical cavity and their thermomechanical (TM) noise signals are measured. We derive a generic expression for the transduction responsivity of the NOMS in terms of optical and mechanical system parameters such as finesse, optomechanical coupling constant, and interaction length. The form of the expression holds direct insight as to how these parameters affect the responsivity. With this expression, we obtain the optomechanical coupling constants using only measurements of the TM noise power spectra and optical cavity transmission slopes. All optical pump/probe operation is also demonstrated in our side-coupled cantilever-racetrack NOMS. Finally, to assess potential operation in a gas sensing environment, the TM noise signal of a device is measured at atmospheric pressure.

  19. Slow DNA transport through nanopores in hafnium oxide membranes.

    Science.gov (United States)

    Larkin, Joseph; Henley, Robert; Bell, David C; Cohen-Karni, Tzahi; Rosenstein, Jacob K; Wanunu, Meni

    2013-11-26

    We present a study of double- and single-stranded DNA transport through nanopores fabricated in ultrathin (2-7 nm thick) freestanding hafnium oxide (HfO2) membranes. The high chemical stability of ultrathin HfO2 enables long-lived experiments with 50 000 DNA translocations with no detectable pore expansion. Mean DNA velocities are slower than velocities through comparable silicon nitride pores, providing evidence that HfO2 nanopores have favorable physicochemical interactions with nucleic acids that can be leveraged to slow down DNA in a nanopore.

  20. Nanoporous carbon actuator and methods of use thereof

    Science.gov (United States)

    Biener, Juergen [San Leandro, CA; Baumann, Theodore F [Discovery Bay, CA; Shao, Lihua [Karlsruhe, DE; Weissmueller, Joerg [Stutensee, DE

    2012-07-31

    An electrochemically driveable actuator according to one embodiment includes a nanoporous carbon aerogel composition capable of exhibiting charge-induced reversible strain when wetted by an electrolyte and a voltage is applied thereto. An electrochemically driven actuator according to another embodiment includes a nanoporous carbon aerogel composition wetted by an electrolyte; and a mechanism for causing charge-induced reversible strain of the composition. A method for electrochemically actuating an object according to one embodiment includes causing charge-induced reversible strain of a nanoporous carbon aerogel composition wetted with an electrolyte to actuate the object by the strain.

  1. Nanoporous hard data: optical encoding of information within nanoporous anodic alumina photonic crystals

    Science.gov (United States)

    Santos, Abel; Law, Cheryl Suwen; Pereira, Taj; Losic, Dusan

    2016-04-01

    Herein, we present a method for storing binary data within the spectral signature of nanoporous anodic alumina photonic crystals. A rationally designed multi-sinusoidal anodisation approach makes it possible to engineer the photonic stop band of nanoporous anodic alumina with precision. As a result, the transmission spectrum of these photonic nanostructures can be engineered to feature well-resolved and selectively positioned characteristic peaks across the UV-visible spectrum. Using this property, we implement an 8-bit binary code and assess the versatility and capability of this system by a series of experiments aiming to encode different information within the nanoporous anodic alumina photonic crystals. The obtained results reveal that the proposed nanosized platform is robust, chemically stable, versatile and has a set of unique properties for data storage, opening new opportunities for developing advanced nanophotonic tools for a wide range of applications, including sensing, photonic tagging, self-reporting drug releasing systems and secure encoding of information.Herein, we present a method for storing binary data within the spectral signature of nanoporous anodic alumina photonic crystals. A rationally designed multi-sinusoidal anodisation approach makes it possible to engineer the photonic stop band of nanoporous anodic alumina with precision. As a result, the transmission spectrum of these photonic nanostructures can be engineered to feature well-resolved and selectively positioned characteristic peaks across the UV-visible spectrum. Using this property, we implement an 8-bit binary code and assess the versatility and capability of this system by a series of experiments aiming to encode different information within the nanoporous anodic alumina photonic crystals. The obtained results reveal that the proposed nanosized platform is robust, chemically stable, versatile and has a set of unique properties for data storage, opening new opportunities for

  2. Nanoporous Glasses for Nuclear Waste Containment

    Directory of Open Access Journals (Sweden)

    Thierry Woignier

    2016-01-01

    Full Text Available Research is in progress to incorporate nuclear waste in new matrices with high structural stability, resistance to thermal shock, and high chemical durability. Interactions with water are important for materials used as a containment matrix for the radio nuclides. It is indispensable to improve their chemical durability to limit the possible release of radioactive chemical species, if the glass structure is attacked by corrosion. By associating high structural stability and high chemical durability, silica glass optimizes the properties of a suitable host matrix. According to an easy sintering stage, nanoporous glasses such as xerogels, aerogels, and composite gels are alternative ways to synthesize silica glass at relatively low temperatures (≈1,000–1,200°C. Nuclear wastes exist as aqueous salt solutions and we propose using the open pore structure of the nanoporous glass to enable migration of the solution throughout the solid volume. The loaded material is then sintered, thereby trapping the radioactive chemical species. The structure of the sintered materials (glass ceramics is that of nanocomposites: actinide phases (~100 nm embedded in a vitreous silica matrix. Our results showed a large improvement in the chemical durability of glass ceramic over conventional nuclear glass.

  3. Thermal characterization of nanoporous 'black silicon' surfaces

    Science.gov (United States)

    Nichols, Logan; Duan, Wenqi; Toor, Fatima

    2016-09-01

    In this work we characterize the thermal conductivity properties of nanoprous `black silicon' (bSi). We fabricate the nanoporous bSi using the metal assisted chemical etching (MACE) process utilizing silver (Ag) metal as the etch catalyst. The MACE process steps include (i) electroless deposition of Ag nanoparticles on the Si surface using silver nitrate (AgNO3) and hydrofluoric acid (HF), and (ii) a wet etch in a solution of HF and hydrogen peroxide (H2O2). The resulting porosity of bSi is dependent on the ratio of the concentration of HF to (HF + H2O2); the ratio is denoted as rho (ρ). We find that as etch time of bSi increases the thermal conductivity of Si increases as well. We also analyze the absorption of the bSi samples by measuring the transmission and reflection using IR spectroscopy. This study enables improved understanding of nanoporous bSi surfaces and how they affect the solar cell performance due to the porous structures' thermal properties.

  4. Gate manipulation of DNA capture into nanopores.

    Science.gov (United States)

    He, Yuhui; Tsutsui, Makusu; Fan, Chun; Taniguchi, Masateru; Kawai, Tomoji

    2011-10-25

    Understanding biophysics governing DNA capture into a nanopore and establishing a manipulation system for the capture process are essential for nanopore-based genome sequencing. In this work, the functionality of extended electric field and electroosmotic flow (EOF) during the capture stage and their dependence on gate voltage, U(G), are investigated. We demonstrate that while both the electric field and EOF within a cis chamber make long-distance contributions to DNA capture around the pore mouth, the former effect is always capturing, while the latter causes trapping or blocking of the molecule depending on the magnitude of the gate voltage, U(G): an anionic EOF induced by high U(G) is capable of doubling the DNA trapping speed and thus the absorption radius in the cis chamber, whereas a cationic EOF by low U(G) would substantially offset the trapping effort by the electric field and even totally block DNA entrance into the pore. Based on the analysis, a gate regulation is proposed with the objective of achieving a high DNA capture rate while maintaining a low error rate.

  5. Capturing CO2 via reactions in nanopores.

    Energy Technology Data Exchange (ETDEWEB)

    Leung, Kevin; Nenoff, Tina Maria; Criscenti, Louise Jacqueline; Tang, Z; Dong, J. H.

    2008-10-01

    This one-year exploratory LDRD aims to provide fundamental understanding of the mechanism of CO2 scrubbing platforms that will reduce green house gas emission and mitigate the effect of climate change. The project builds on the team members expertise developed in previous LDRD projects to study the capture or preferential retention of CO2 in nanoporous membranes and on metal oxide surfaces. We apply Density Functional Theory and ab initio molecular dynamics techniques to model the binding of CO2 on MgO and CaO (100) surfaces and inside water-filled, amine group functionalized silica nanopores. The results elucidate the mechanisms of CO2 trapping and clarify some confusion in the literature. Our work identifies key future calculations that will have the greatest impact on CO2 capture technologies, and provides guidance to science-based design of platforms that can separate the green house gas CO2 from power plant exhaust or even from the atmosphere. Experimentally, we modify commercial MFI zeolite membranes and find that they preferentially transmit H2 over CO2 by a factor of 34. Since zeolite has potential catalytic capability to crack hydrocarbons into CO2 and H2, this finding paves the way for zeolite membranes that can convert biofuel into H2 and separate the products all in one step.

  6. Graphene nanopores as negative differential resistance devices

    Energy Technology Data Exchange (ETDEWEB)

    Qiu, Wanzhi; Nguyen, Phuong Duc; Skafidas, Efstratios, E-mail: sskaf@unimelb.edu.au [Centre for Neural Engineering, The University of Melbourne, 203 Bouverie Street, Carlton, Victoria 3053, Australia and Department of Electrical and Electronic Engineering, The University of Melbourne, Parkville, Victoria 3010 (Australia)

    2015-02-07

    We present graphene nanopores as new negative differential resistance (NDR) devices, and study their quantum transport properties using non-equilibrium Green's function and the density functional tight binding method. The proposed device structure is created on intrinsic armchair-edged graphene nanoribbons with uniform widths, where the central scattering region has a nanopore in the interior, and the two ends of the nanoribbon act naturally as connecting electrodes. We show that nitrogen-passivated scattering regions generally result in pronounced NDR properties, while hydrogen-passivated ones do not. This NDR effect occurs at low bias voltages, below 1 V, and achieves extraordinarily high peak-to-valley current ratio, while still attaining very high peak current densities. In addition, very sharp current peaks in the μA range can occur in the I-V curves, and through varying structural dimensions of the proposed structure multiple NDR regions can be realized. These results suggest that the device has promising potential in applications such as high frequency oscillators, memory devices, and fast switches.

  7. Chain-like molecules confined in nanopores

    Science.gov (United States)

    Huber, Patrick; Soprunyuk, Viktor; Hofmann, Tommy; Knorr, Klaus

    2004-03-01

    We present an x-ray diffraction study on chain-like molecules, i.e. a selection of n-alkane molecules, embedded in the pores of nanoporous silica matrices. The lengths of the hydrocarbon chains are comparable to the mean diameter ( 7nm) of the tubular like nanopores which leads to drastic geometric restrictions. Diffraction patterns, recorded on heating and cooling between 200 K and 310 K, elucidate how the structure and phase behavior of the molecules is affected by the random substrate disorder and the confinement. The confined n-alkanes form close-packed structures by aligning parallel to the pore axis. In the case of the medium-length hydrocarbon chains one basic ordering principle known from the bulk crystalline state, i.e. the lamellar ordering of the molecules, is quenched[1], whereas for shorter n-alkanes this ordering principle survives[2]. The confined solids mimic the orientational order-disorder transitions known from the 3D unconfined crystals albeit in a modified fashion. 1. P. Huber, D. Wallacher, J. Albers, K. Knorr, Europhysics Letters, in press; 2. P. Huber, D. Wallacher, J. Albers, K. Knorr, Journal of Physics: Condensed Matter 15, 309 (2003).

  8. Cavitation and pore blocking in nanoporous glasses.

    Science.gov (United States)

    Reichenbach, C; Kalies, G; Enke, D; Klank, D

    2011-09-06

    In gas adsorption studies, porous glasses are frequently referred to as model materials for highly disordered mesopore systems. Numerous works suggest that an accurate interpretation of physisorption isotherms requires a complete understanding of network effects upon adsorption and desorption, respectively. The present article deals with nitrogen and argon adsorption at different temperatures (77 and 87 K) performed on a series of novel nanoporous glasses (NPG) with different mean pore widths. NPG samples contain smaller mesopores and significantly higher microporosity than porous Vycor glass or controlled pore glass. Since the mean pore width of NPG can be tuned sensitively, the evolution of adsorption characteristics with respect to a broadening pore network can be investigated starting from the narrowest nanopore width. With an increasing mean pore width, a H2-type hysteresis develops gradually which finally transforms into a H1-type. In this connection, a transition from a cavitation-induced desorption toward desorption controlled by pore blocking can be observed. Furthermore, we find concrete hints for a pore size dependence of the relative pressure of cavitation in highly disordered pore systems. By comparing nitrogen and argon adsorption, a comprehensive insight into adsorption mechanisms in novel disordered materials is provided.

  9. Topological defects: origin of nanopores and enhanced adsorption performance in nanoporous carbon.

    Science.gov (United States)

    Guo, Junjie; Morris, James R; Ihm, Yungok; Contescu, Cristian I; Gallego, Nidia C; Duscher, Gerd; Pennycook, Stephen J; Chisholm, Matthew F

    2012-11-05

    A scanning transmission electron microscopy investigation of two nanoporous carbon materials, wood-based ultramicroporous carbon and poly(furfuryl alcohol)-derived carbon, is reported. Atomic-resolution images demonstrate they comprise isotropic, three-dimensional networks of wrinkled one-atom-thick graphene sheets. In each graphene plane, nonhexagonal defects are frequently observed as connected five- and seven-atom rings. Atomic-level modeling shows that these topological defects induce localized rippling of graphene sheets, which interferes with their graphitic stacking and induces nanopores that lead to enhanced adsorption of H(2) molecules. The poly(furfuryl alcohol)-derived carbon contains larger regions of stacked layers, and shows significantly smaller surface area and pore volume than the ultramicroporous carbon.

  10. DUMAND detector

    CERN Multimedia

    This object is one of the 256 other detectors of the DUMAND (Deep Underwater Muon And Neutrino Detection) experiment. The goal of the experiment was the construction of the first deep ocean high energy neutrino detector, to be placed at 4800 m depth in the Pacific Ocean off Keahole Point on the Big Island of Hawaii. A few years ago, a European conference with Cosmic experiments was organized at CERN as they were projects like DUMAND in Hawaii. Along with the conference, a temporary exhibition was organised as well. It was a collaboration of institutions from Germany, Japan, Switzerland and the U.S.A. CERN had borrowed equipment and objects from different institutes around the world, including this detector of the DUMAND experiment. Most of the equipment were sent back to the institutes, however this detector sphere was offered to a CERN member of the personnel.

  11. Graphene nanopore with a self-integrated optical antenna.

    Science.gov (United States)

    Nam, SungWoo; Choi, Inhee; Fu, Chi-cheng; Kim, Kwanpyo; Hong, SoonGweon; Choi, Yeonho; Zettl, Alex; Lee, Luke P

    2014-10-08

    We report graphene nanopores with integrated optical antennae. We demonstrate that a nanometer-sized heated spot created by photon-to-heat conversion of a gold nanorod resting on a graphene membrane forms a nanoscale pore with a self-integrated optical antenna in a single step. The distinct plasmonic traits of metal nanoparticles, which have a unique capability to concentrate light into nanoscale regions, yield the significant advantage of parallel nanopore fabrication compared to the conventional sequential process using an electron beam. Tunability of both the nanopore dimensions and the optical characteristics of plasmonic nanoantennae are further achieved. Finally, the key optical function of our self-integrated optical antenna on the vicinity of graphene nanopore is manifested by multifold fluorescent signal enhancement during DNA translocation.

  12. Nanoporous CuS with excellent photocatalytic property

    Science.gov (United States)

    Xu, Wence; Zhu, Shengli; Liang, Yanqin; Li, Zhaoyang; Cui, Zhenduo; Yang, Xianjin; Inoue, Akihisa

    2015-12-01

    We present the rational synthesis of nanoporous CuS for the first time by chemical dealloying method. The morphologies of the CuS catalysts are controlled by the composition of the original amorphous alloys. Nanoporous Cu2S is firstly formed during the chemical dealloying process, and then the Cu2S transforms into CuS. The nanoporous CuS exhibits excellent photocatalytic activity for the degradation of the methylene blue (MB), methyl orange (MO) and rhodamine B (RhB). The excellent photocatalytic activity of the nanoporous CuS is mainly attributed to the large specific surface area, high adsorbing capacity of dyes and low recombination of the photo generated electrons and holes. In the photo degradation process, both chemical and photo generated hydroxyl radicals are generated. The hydroxyl radicals are favor in the oxidation of the dye molecules. The present modified dealloying method may be extended for the preparation of other porous metal sulfide nanostructures.

  13. Structure-property relations of gold and graphene nanoporous actuators

    NARCIS (Netherlands)

    Saane, Siva Shankar Reddy

    2015-01-01

    Electrochemical nanoporous actuators have low weight, large specific surface areas and low voltage operating capabilities, making them attractive for application in small-scale electromechanical devices. The actuation strain of these materials at the macroscopic scale is a manifestation of

  14. Bivalent ion transport through graphene/PET nanopore

    Science.gov (United States)

    Yao, Huijun; Cheng, Yaxiong; Zeng, Jian; Mo, Dan; Duan, Jinglai; Liu, Jiande; Zhai, Pengfei; Sun, Youmei; Liu, Jie

    2016-05-01

    The PET suspended single graphene nanopore (G/PET) was produced by heavy ion irradiation and asymmetric chemical etching. The solutions of NiSO4, NiCl2, CuSO4 and CuCl2 with different concentration were adopted to study the transport properties of bivalent ion in single G/PET nanopore by measuring the I-V curves. The perfect "diode effect" and excellent rectification effect of G/PET nanopore were observed, and the huge rectification ratio up to 43.3 was obtained in NiSO4 solution. The great solution selectivity and ion current magnification effect of graphene/PET nanopore were also confirmed in our study.

  15. Ion and water transport in charge-modified graphene nanopores

    CERN Document Server

    Qiu, Yinghua; Chen, Weiyu; Si, Wei; Tan, Qiyan; Chen, Yunfei

    2016-01-01

    Porous graphene has high mechanical strength and atomic layer thickness, which make it a promising material for material separation and biomolecule sensing. Electrostatic interactions between charges in aqueous solution are a kind of strong long-range interaction which may have great influence on the fluid transport through nanopores. Here, molecular dynamics simulations were conducted to investigate ion and water transport through a 1.05-nm-in-diameter monolayer graphene nanopore with its edge charge-modified. From the results, it is found that the nanopores are selective to counterions when they are charged. As the charge amount increases, the total ionic currents show an increase-decrease profile while the co-ion currents monotonously decrease. The co-ions rejection can reach 75% and 90% when the nanopores are negatively and positively charged, respectively. Cl ions current increases and reaches a plateau, and Na+ current decreases with the charge amount in the systems where they act as counterions. Beside...

  16. Side-gated ultrathin-channel nanopore FET sensors.

    Science.gov (United States)

    Yanagi, Itaru; Oura, Takeshi; Haga, Takanobu; Ando, Masahiko; Yamamoto, Jiro; Mine, Toshiyuki; Ishida, Takeshi; Hatano, Toshiyuki; Akahori, Rena; Yokoi, Takahide; Anazawa, Takashi

    2016-03-18

    A side-gated, ultrathin-channel nanopore FET (SGNAFET) is proposed for fast and label-free DNA sequencing. The concept of the SGNAFET comprises the detection of changes in the channel current during DNA translocation through a nanopore and identifying the four types of nucleotides as a result of these changes. To achieve this goal, both p- and n-type SGNAFETs with a channel thicknesses of 2 or 4 nm were fabricated, and the stable transistor operation of both SGNAFETs in air, water, and a KCl buffer solution were confirmed. In addition, synchronized current changes were observed between the ionic current through the nanopore and the SGNAFET's drain current during DNA translocation through the nanopore.

  17. Voltage-controlled metal binding on polyelectrolyte-functionalized nanopores.

    Science.gov (United States)

    Actis, Paolo; Vilozny, Boaz; Seger, R Adam; Li, Xiang; Jejelowo, Olufisayo; Rinaudo, Marguerite; Pourmand, Nader

    2011-05-17

    Most of the research in the field of nanopore-based platforms is focused on monitoring ion currents and forces as individual molecules translocate through the nanopore. Molecular gating, however, can occur when target analytes interact with receptors appended to the nanopore surface. Here we show that a solid state nanopore functionalized with polyelectrolytes can reversibly bind metal ions, resulting in a reversible, real-time signal that is concentration dependent. Functionalization of the sensor is based on electrostatic interactions, requires no covalent bond formation, and can be monitored in real time. Furthermore, we demonstrate how the applied voltage can be employed to tune the binding properties of the sensor. The sensor has wide-ranging applications and, its simplest incarnation can be used to study binding thermodynamics using purely electrical measurements with no need for labeling.

  18. Forensic SNP Genotyping using Nanopore MinION Sequencing

    Science.gov (United States)

    Cornelis, Senne; Gansemans, Yannick; Deleye, Lieselot; Deforce, Dieter; Van Nieuwerburgh, Filip

    2017-01-01

    One of the latest developments in next generation sequencing is the Oxford Nanopore Technologies’ (ONT) MinION nanopore sequencer. We studied the applicability of this system to perform forensic genotyping of the forensic female DNA standard 9947 A using the 52 SNP-plex assay developed by the SNPforID consortium. All but one of the loci were correctly genotyped. Several SNP loci were identified as problematic for correct and robust genotyping using nanopore sequencing. All these loci contained homopolymers in the sequence flanking the forensic SNP and most of them were already reported as problematic in studies using other sequencing technologies. When these problematic loci are avoided, correct forensic genotyping using nanopore sequencing is technically feasible. PMID:28155888

  19. Current steering effect of GaN nanoporous structure

    Energy Technology Data Exchange (ETDEWEB)

    Lin, Chia-Feng, E-mail: cflin@dragon.nchu.edu.tw [Department of Materials Science and Engineering, National Chung Hsing University, Taichung 402, Taiwan (China); Department of Electrical Engineering, Yale University, New Haven, CT 06520 (United States); Wang, Jing-Hao; Cheng, Po-Fu; Tseng, Wang-Po; Fan, Feng-Hsu; Wu, Kaun-Chun; Lee, Wen-Che [Department of Materials Science and Engineering, National Chung Hsing University, Taichung 402, Taiwan (China); Han, Jung [Department of Electrical Engineering, Yale University, New Haven, CT 06520 (United States)

    2014-11-03

    Current steering effect of InGaN light emitting diode (LED) structure was demonstrated by forming a high resistivity GaN nanoporous structure. Disk-array patterns with current-injection bridge structures were fabricated on InGaN LED devices through a focused ion beam (FIB) system. GaN nanoporous structure was formed around the FIB-drilled holes through a electrochemical (EC) wet-etching process on a n-type GaN:Si layer under the InGaN active layer. High emission intensity and small peak wavelength blueshift phenomenon of the electroluminescence spectra were observed in the EC-treated region compared with the non-treated region. The branch-like nanoporous structure was formed along the lateral etched direction to steer the injection current in 5 μm-width bridge structures. In the FIB-drilled hole structure, high light emission intensity of the central-disk region was observed by enlarging the bridge width to 10 μm, with a 5 μm EC-treated width, that reduced the current steering effect and increased the light scattering effect on the nanoporous structure. The EC-treated GaN:Si nanoporous structure acted as a high light scattering structure and a current steering structure that has potential on the current confinement for vertical cavity surface emitting laser applications. - Highlights: • High resistivity nanoporous-GaN formed in InGaN LED through electrochemical process. • Branch-like nanoporous in 5 μm-width bridge structure can steer the injection current. • Nanoporous GaN acted as s light scattering and current steering structures in InGaN LED.

  20. DNA-functionalized solid state nanopore for biosensing

    Energy Technology Data Exchange (ETDEWEB)

    Mussi, V; Fanzio, P; Repetto, L; Firpo, G; Valbusa, U [Nanomed Labs, Physics Department, University of Genova, Advanced Biotechnology Center, Largo R. Benzi, 10 Genova, 16132 (Italy); Scaruffi, P; Stigliani, S; Tonini, G P, E-mail: mussi@fisica.unige.it [Translational Pediatric Oncology, National Institute for Cancer Research (IST), Largo R. Benzi, 10 Genova, 16132 (Italy)

    2010-04-09

    The possible use of nanopores for single DNA molecules biosensing has been demonstrated, but much remains to do in order to develop advanced engineered devices with enhanced stability, and controlled geometry and surface properties. Here we present morphological and electrical characterization of solid state silicon nitride nanopores fabricated by focused ion beam direct milling and chemically functionalized by probe oligonucleotides, with the final aim of developing a versatile tool for biosensing and gene expression profiling.

  1. Hydrophilic nanoporous polystyrenes and 1,2-polybutadienes

    DEFF Research Database (Denmark)

    Guo, Fengxiao; Jankova Atanasova, Katja; Vigild, Martin Etchells;

    2008-01-01

    Nanoporous polymers from ordered block copolymers having hydrophilic cavity surfaces were successfully prepared by two methodologies: ' 1. Nanoporous polystyrenes fromPtBA-b-PS diblock or PDMS-b-PtBA-b-PS triblock copolymer precursors by atom transfer radical polymerization (ATRP), or combination...... different pathways for the conversion of the double bonds of 1,2-PB to bromoisobutyrate by using one to three steps chemical modification. Grafting polyacrylate layers of PPEGMA, PHEMA etc. onto themon...

  2. Electromechanical Energy Transduction for Hybrid Vehicles

    Science.gov (United States)

    Reddy Vanja, Sridhar; Kelly, Michael W.; Caruso, A. N.

    2010-03-01

    Hybrid vehicle technology seeks to reduce the total energy consumption used for vehicle locomotion by recovering and reutilizing kinetic energy that is otherwise unrecovered or dissipated in conventional vehicle deceleration. The goal of the work is to determine the transduction mechanisms that work towards a Carnot efficiency without considering constraints or limitations placed by cost or materials. Specifically, this talk will present ideal thermodynamic models of energy exchange between mechanical, electrostatic, electromechanical and electrochemical devices with a goal of projecting an ideal hybrid vehicle.

  3. Brassinosteroid signal transduction: An emerging picture

    Institute of Scientific and Technical Information of China (English)

    WANG Qiaomei; MA Ligeng

    2003-01-01

    Steroid hormones play essential roles in animal growth and development. Steroid signaling in animal system is focused on the direct gene regulation response mediated by its nuclear receptors. Recently, steroid hormones are also found in plants. Identification of BRI1 - a critical component of the plasma-membrane steroid receptor complex, and the related signal transduction pathway mediated by the membrane receptor have revealed an elementary picture of BR signaling from the cell surface perception to the activation of BR-responsive nuclear genes.

  4. Antibacterial activity of zinc oxide-coated nanoporous alumina

    Energy Technology Data Exchange (ETDEWEB)

    Skoog, S.A. [Joint Department of Biomedical Engineering, University of North Carolina and North Carolina State University, Box 7115, Raleigh, NC 27695-7115 (United States); Bayati, M.R. [Department of Materials Science and Engineering, North Carolina State University, Box 7907, Raleigh, NC 27695-7907 (United States); Petrochenko, P.E. [Joint Department of Biomedical Engineering, University of North Carolina and North Carolina State University, Box 7115, Raleigh, NC 27695-7115 (United States); Division of Biology, Office of Science and Engineering Laboratories, Center for Devices and Radiological Health, U.S. Food and Drug Administration, Silver Spring, MD 20993 (United States); Stafslien, S.; Daniels, J.; Cilz, N. [Center for Nanoscale Science and Engineering, North Dakota State University, 1805 Research Park Drive, Fargo, ND 58102 (United States); Comstock, D.J.; Elam, J.W. [Energy Systems Division, Argonne National Laboratory, Argonne, IL 60439 (United States); Narayan, R.J., E-mail: roger_narayan@msn.com [Joint Department of Biomedical Engineering, University of North Carolina and North Carolina State University, Box 7115, Raleigh, NC 27695-7115 (United States); Department of Materials Science and Engineering, North Carolina State University, Box 7907, Raleigh, NC 27695-7907 (United States)

    2012-07-25

    Highlights: Black-Right-Pointing-Pointer Atomic layer deposition was used to deposit ZnO on nanoporous alumina membranes. Black-Right-Pointing-Pointer Scanning electron microscopy showed continuous coatings of zinc oxide nanocrystals. Black-Right-Pointing-Pointer Activity against B. subtilis, E. coli, S. aureus, and S. epidermidis was shown. - Abstract: Nanoporous alumina membranes, also known as anodized aluminum oxide membranes, are being investigated for use in treatment of burn injuries and other skin wounds. In this study, atomic layer deposition was used for coating the surfaces of nanoporous alumina membranes with zinc oxide. Agar diffusion assays were used to show activity of zinc oxide-coated nanoporous alumina membranes against several bacteria found on the skin surface, including Bacillus subtilis, Escherichia coli, Staphylococcus aureus, and Staphylococcus epidermidis. On the other hand, zinc oxide-coated nanoporous alumina membranes did not show activity against Pseudomonas aeruginosa, Enterococcus faecalis, and Candida albicans. These results suggest that zinc oxide-coated nanoporous alumina membranes have activity against some Gram-positive and Gram-negative bacteria that are associated with skin colonization and skin infection.

  5. Streaming current magnetic fields in a charged nanopore

    Science.gov (United States)

    Mansouri, Abraham; Taheri, Peyman; Kostiuk, Larry W.

    2016-11-01

    Magnetic fields induced by currents created in pressure driven flows inside a solid-state charged nanopore were modeled by numerically solving a system of steady state continuum partial differential equations, i.e., Poisson, Nernst-Planck, Ampere and Navier-Stokes equations (PNPANS). This analysis was based on non-dimensional transport governing equations that were scaled using Debye length as the characteristic length scale, and applied to a finite length cylindrical nano-channel. The comparison of numerical and analytical studies shows an excellent agreement and verified the magnetic fields density both inside and outside the nanopore. The radially non-uniform currents resulted in highly non-uniform magnetic fields within the nanopore that decay as 1/r outside the nanopore. It is worth noting that for either streaming currents or streaming potential cases, the maximum magnetic field occurred inside the pore in the vicinity of nanopore wall, as opposed to a cylindrical conductor that carries a steady electric current where the maximum magnetic fields occur at the perimeter of conductor. Based on these results, it is suggested and envisaged that non-invasive external magnetic fields readouts generated by streaming/ionic currents may be viewed as secondary electronic signatures of biomolecules to complement and enhance current DNA nanopore sequencing techniques.

  6. Ion and water transport in charge-modified graphene nanopores

    Institute of Scientific and Technical Information of China (English)

    裘英华; 李堃; 陈伟宇; 司伟; 谭启檐; 陈云飞

    2015-01-01

    Porous graphene has a high mechanical strength and an atomic-layer thickness that makes it a promising material for material separation and biomolecule sensing. Electrostatic interactions between charges in aqueous solutions are a type of strong long-range interaction that may greatly infl uence fl uid transport through nanopores. In this study, molecular dynamic simulations were conducted to investigate ion and water transport through 1.05-nm diameter monolayer graphene nanopores, with their edges charge-modified. Our results indicated that these nanopores are selective to counterions when they are charged. As the charge amount increases, the total ionic currents show an increase–decrease profile while the co-ion currents monotonically decrease. The co-ion rejection can reach 76.5%and 90.2%when the nanopores are negatively and positively charged, respectively. The Cl−ion current increases and reaches a plateau, and the Na+current decreases as the charge amount increases in systems in which Na+ions act as counterions. In addition, charge modification can enhance water transport through nanopores. This is mainly due to the ion selectivity of the nanopores. Notably, positive charges on the pore edges facilitate water transport much more strongly than negative charges.

  7. Streaming current magnetic fields in a charged nanopore

    Science.gov (United States)

    Mansouri, Abraham; Taheri, Peyman; Kostiuk, Larry W.

    2016-01-01

    Magnetic fields induced by currents created in pressure driven flows inside a solid-state charged nanopore were modeled by numerically solving a system of steady state continuum partial differential equations, i.e., Poisson, Nernst-Planck, Ampere and Navier-Stokes equations (PNPANS). This analysis was based on non-dimensional transport governing equations that were scaled using Debye length as the characteristic length scale, and applied to a finite length cylindrical nano-channel. The comparison of numerical and analytical studies shows an excellent agreement and verified the magnetic fields density both inside and outside the nanopore. The radially non-uniform currents resulted in highly non-uniform magnetic fields within the nanopore that decay as 1/r outside the nanopore. It is worth noting that for either streaming currents or streaming potential cases, the maximum magnetic field occurred inside the pore in the vicinity of nanopore wall, as opposed to a cylindrical conductor that carries a steady electric current where the maximum magnetic fields occur at the perimeter of conductor. Based on these results, it is suggested and envisaged that non-invasive external magnetic fields readouts generated by streaming/ionic currents may be viewed as secondary electronic signatures of biomolecules to complement and enhance current DNA nanopore sequencing techniques. PMID:27833119

  8. Impedance nanopore biosensor: influence of pore dimensions on biosensing performance.

    Science.gov (United States)

    Kant, Krishna; Yu, Jingxian; Priest, Craig; Shapter, Joe G; Losic, Dusan

    2014-03-07

    Knowledge about electrochemical and electrical properties of nanopore structures and the influence of pore dimensions on these properties is important for the development of nanopore biosensing devices. The aim of this study was to explore the influence of nanopore dimensions (diameter and length) on biosensing performance using non-faradic electrochemical impedance spectroscopy (EIS). Nanoporous alumina membranes (NPAMs) prepared by self-ordered electrochemical anodization of aluminium were used as model nanopore sensing platforms. NPAMs with different pore diameters (25-65 nm) and lengths (4-18 μm) were prepared and the internal pore surface chemistry was modified by covalently attaching streptavidin and biotin. The performance of this antibody nanopore biosensing platform was evaluated using various concentrations of biotin as a model analyte. EIS measurements of pore resistivity and conductivity were carried out for pores with different diameters and lengths. The results showed that smaller pore dimensions of 25 nm and pore lengths up to 10 μm provide better biosensing performance.

  9. Weakened Flexural Strength of Nanocrystalline Nanoporous Gold by Grain Refinement.

    Science.gov (United States)

    Gwak, Eun-Ji; Kim, Ju-Young

    2016-04-13

    High density of grain boundaries in solid materials generally leads to high strength because grain boundaries act as strong obstacles to dislocation activity. We find that the flexural strength of nanoporous gold of grain size 206 nm is 33.6% lower than that of grain size 238 μm. We prepared three gold-silver precursor alloys, well-annealed, prestrained, and high-energy ball-milled, from which nanoporous gold samples were obtained by the same free-corrosion dealloying process. Ligaments of the same size are formed regardless of precursor alloys, and microstructural aspects of precursor alloys such as crystallographic orientation and grain size is preserved in the dealloying process. While the nanoindentation hardness of three nanoporous golds is independent of microstructural variation, flexural strength of nanocrystalline nanoporous gold is significantly lower than that of nanoporous golds with much larger grain size. We investigate weakening mechanisms of grain boundaries in nanocrystalline nanoporous gold, leading to weakening of flexural strength.

  10. Biomimetic solution against dewetting in a highly hydrophobic nanopore.

    Science.gov (United States)

    Picaud, Fabien; Paris, Guillaume; Gharbi, Tijani; Balme, Sébastien; Lepoitevin, Mathilde; Tangaraj, Vidhyadevi; Bechelany, Mikhael; Janot, Jean Marc; Balanzat, Emmanuel; Henn, François

    2016-06-14

    A water molecule is the foundation of life and is the primary compound in every living system. While many of its properties are understood in a bulk solvent, its behavior in a small hydrophobic nanopore still raises fundamental questions. For instance, a wetting/dewetting transition in a hydrophobic solid-state or a polymer nanopore occurs stochastically and can only be prevented by external physical stimuli. Controlling these transitions would be a primary requirement to improve many applications. Some biological channels, such as gramicidin A (gA) proteins, show a high rate of water and ion diffusion in their central subnanochannel while their external surface is highly hydrophobic. The diameter of this channel is significantly smaller than the inner size of the lowest artificial nanopore in which water drying occurs (i.e. 1.4 nm). In this paper, we propose an innovative idea to generate nanopore wetting as a result of which the application of an external field is no longer required. In a nanopore, the drying or wetting of the inner walls occurs randomly (in experiments and in simulations). However, we have shown how the confinement of gA, in a dried hydrophobic nanopore, rapidly generates a stable wetting of the latter. We believe that this simple idea, based on biomimetism, could represent a real breakthrough that could help to improve and develop new nanoscale applications.

  11. Silicon Nanopore Devices for DNA Translocation and Sequencing Studies

    Science.gov (United States)

    Ling, Sean

    2005-03-01

    In this talk, I will discuss the recent progress [1-3] in developing solid-state nanopore devices using silicon technology. We have demonstrated a novel technique for shaping nanopores in the range of 1-10 nm, using surface-tension-driven mass flow with single nanometer precision. This technique overcomes a major technical challenge in silicon technology. I will also discuss the current effort [3] in developing integrated nanopore silicon chips with electrically addressable nanopores. These devices are used for DNA translocation and sequencing studies. This work was done in collaboration with the group of Cees Dekker at TU-Delft with partial support from FOM and Guggenheim Foundation. The work at Brown was supported by NSF-NER and NSF-NIRT. [1] A.J. Storm, J.H. Chen, X.S. Ling, H. Zandbergen, and C. Dekker, ``Fabrication of Solid-State Nanopores with Single Nanometer Precision'', Nature Materials, 2, 537 (2003). [2] A.J. Storm, J.H. Chen, X.S. Ling, H. Zandbergen, and C. Dekker, ``Electron-Beam-Induced Deformations of SiO2 Nanostructures'', Journal of Applied Physics (submitted, 2004). [3] X.S. Ling, "Addressable nanopores and micropores" (patent pending).

  12. Effects of adsorption and confinement on nanoporous electrochemistry.

    Science.gov (United States)

    Bae, Je Hyun; Han, Ji-Hyung; Han, Donghyeop; Chung, Taek Dong

    2013-01-01

    Characteristic molecular dynamics of reactant molecules confined in the space of the nanometer scale augments the frequency of collisions with the electrified surface so that a given faradaic reaction can be enhanced at nanoporous electrodes, the so-called nano-confinement effect. Since this effect is grounded on diffusion inside nanopores, it is predicted that adsorption onto the surface will seriously affect the enhancement by nano-confinement. We experimentally explored the correlation between adsorption and the confinement effect by examining the oxidation of butanol isomers at platinum and gold nanoporous electrodes. The results showed that electrooxidation of 2-butanol, which is a non-adsorption reaction, was enhanced more than that of 1-butanol, which is an adsorption reaction, at nanoporous platinum in acidic media. In contrast, the nanoporous gold electrode, on which 1-butanol is less adsorptive than it is on platinum, enhanced the electrooxidation of 1-butanol greatly. Furthermore, the electrocatalytic activity of nanoporous gold for oxygen reduction reaction was improved so much as to be comparable with that of flat Pt. These findings show that the nano-confinement effect can be appreciable for electrocatalytic oxygen reduction as well as alcohol oxidation unless the adsorption is extensive, and suggests a new strategy in terms of material design for innovative non-noble metal electrocatalysts.

  13. DNA Origami-Graphene Hybrid Nanopore for DNA Detection.

    Science.gov (United States)

    Barati Farimani, Amir; Dibaeinia, Payam; Aluru, Narayana R

    2017-01-11

    DNA origami nanostructures can be used to functionalize solid-state nanopores for single molecule studies. In this study, we characterized a nanopore in a DNA origami-graphene heterostructure for DNA detection. The DNA origami nanopore is functionalized with a specific nucleotide type at the edge of the pore. Using extensive molecular dynamics (MD) simulations, we computed and analyzed the ionic conductivity of nanopores in heterostructures carpeted with one or two layers of DNA origami on graphene. We demonstrate that a nanopore in DNA origami-graphene gives rise to distinguishable dwell times for the four DNA base types, whereas for a nanopore in bare graphene, the dwell time is almost the same for all types of bases. The specific interactions (hydrogen bonds) between DNA origami and the translocating DNA strand yield different residence times and ionic currents. We also conclude that the speed of DNA translocation decreases due to the friction between the dangling bases at the pore mouth and the sequencing DNA strands.

  14. Streaming current magnetic fields in a charged nanopore.

    Science.gov (United States)

    Mansouri, Abraham; Taheri, Peyman; Kostiuk, Larry W

    2016-11-11

    Magnetic fields induced by currents created in pressure driven flows inside a solid-state charged nanopore were modeled by numerically solving a system of steady state continuum partial differential equations, i.e., Poisson, Nernst-Planck, Ampere and Navier-Stokes equations (PNPANS). This analysis was based on non-dimensional transport governing equations that were scaled using Debye length as the characteristic length scale, and applied to a finite length cylindrical nano-channel. The comparison of numerical and analytical studies shows an excellent agreement and verified the magnetic fields density both inside and outside the nanopore. The radially non-uniform currents resulted in highly non-uniform magnetic fields within the nanopore that decay as 1/r outside the nanopore. It is worth noting that for either streaming currents or streaming potential cases, the maximum magnetic field occurred inside the pore in the vicinity of nanopore wall, as opposed to a cylindrical conductor that carries a steady electric current where the maximum magnetic fields occur at the perimeter of conductor. Based on these results, it is suggested and envisaged that non-invasive external magnetic fields readouts generated by streaming/ionic currents may be viewed as secondary electronic signatures of biomolecules to complement and enhance current DNA nanopore sequencing techniques.

  15. Local solid-state modification of nanopore surface charges

    CERN Document Server

    Kox, Ronald; Chen, Chang; Arjmandi, Nima; Lagae, Liesbet; Borghs, Gustaaf; 10.1088/0957-4484/21/33/335703

    2012-01-01

    The last decade, nanopores have emerged as a new and interesting tool for the study of biological macromolecules like proteins and DNA. While biological pores, especially alpha-hemolysin, have been promising for the detection of DNA, their poor chemical stability limits their use. For this reason, researchers are trying to mimic their behaviour using more stable, solid-state nanopores. The most successful tools to fabricate such nanopores use high energy electron or ions beams to drill or reshape holes in very thin membranes. While the resolution of these methods can be very good, they require tools that are not commonly available and tend to damage and charge the nanopore surface. In this work, we show nanopores that have been fabricated using standard micromachning techniques together with EBID, and present a simple model that is used to estimate the surface charge. The results show that EBID with a silicon oxide precursor can be used to tune the nanopore surface and that the surface charge is stable over a...

  16. Analysis of electrolyte transport through charged nanopores

    CERN Document Server

    Peters, P B; Bazant, M Z; Biesheuvel, P M

    2015-01-01

    We revisit the classical problem of the flow of an electrolyte solution through charged capillaries (nanopores). In the limit where the length of the capillary is much larger than its radius, the problem can be simplified to a one-dimensional averaged flux-force formalism that relates the relevant fluxes (electrical current, salt flux, fluid velocity) to their respective driving forces (difference in electric potential, salt concentration, pressure). Calculations in literature mainly consider the limit of non-overlapping electrical double layers (EDLs) in the pores and the absence of salt concentration gradients in the axial direction. In the present work these simplifications are relaxed and we discuss the general case with overlapping EDLs and nonzero axial salt concentration gradients. The 3x3 matrix that relates these quantities exhibits Onsager symmetry and for one of the cross coefficients we report a new significant simplification. We describe how Onsager symmetry is preserved under change of variables...

  17. Gyroid Nanoporous Membranes with Tunable Permeability

    DEFF Research Database (Denmark)

    Li, Li; Schulte, Lars; Clausen, Lydia D.

    2011-01-01

    Understanding the relevant permeability properties of ultrafiltration membranes is facilitated by using materials and procedures that allow a high degree of control on morphology and chemical composition. Here we present the first study on diffusion permeability through gyroid nanoporous cross......-sided skin membranes, much faster than expected by a naive resistance-in-series model; the flux through the two-sided skin membranes even increases with the membrane thickness. We propose a model that captures the physics behind the observed phenomena, as confirmed by flow visualization experiments...... the effective diffusion coefficients of a series of antibiotics, proteins, and other biomolecules; solute permeation is discussed in terms of hindered diffusion. The combination of uniform bulk morphology, isotropically percolating porosity, controlled surface chemistry, and tunable permeability is distinctive...

  18. Electroosmotic flow rectification in conical nanopores

    CERN Document Server

    Laohakunakorn, Nadanai

    2015-01-01

    Recent experimental work has suggested that electroosmotic flows (EOF) through conical nanopores exhibit rectification in the opposite sense to the well-studied effect of ionic current rectification. A positive bias voltage generates large EOF and small current, while negative voltages generate small EOF and large current. Here we systematically investigate this effect using finite-element simulations. We find that inside the pore, the electric field and salt concentration are inversely correlated, which leads to the inverse relationship between the magnitudes of EOF and current. Rectification occurs when the pore is driven into states characterized by different salt concentrations depending on the sign of the voltage. The mechanism responsible for this behaviour is concentration polarization, which requires the pore to exhibit the properties of permselectivity and asymmetry.

  19. Electroosmotic flow rectification in conical nanopores.

    Science.gov (United States)

    Laohakunakorn, Nadanai; Keyser, Ulrich F

    2015-07-10

    Recent experimental work has suggested that electroosmotic flows (EOFs) through conical nanopores exhibit rectification in the opposite sense to the well-studied effect of ionic current rectification. A positive bias voltage generates large EOF and small current, while negative voltages generate small EOF and large current. Here we systematically investigate this effect using finite-element simulations. We find that inside the pore, the electric field and salt concentration are inversely correlated, which leads to the inverse relationship between the magnitudes of EOF and current. Rectification occurs when the pore is driven into states characterized by different salt concentrations depending on the sign of the voltage. The mechanism responsible for this behaviour is concentration polarization, which requires the pore to exhibit the properties of permselectivity and asymmetry.

  20. Enzyme Reactions in Nanoporous, Picoliter Volume Containers

    Energy Technology Data Exchange (ETDEWEB)

    Siuti, Piro [ORNL; Retterer, Scott T [ORNL; Choi, Chang Kyoung [Michigan Technological University; Doktycz, Mitchel John [ORNL

    2012-01-01

    Advancements in nanoscale fabrication allow creation of small volume reaction containers that can facilitate the screening and characterization of enzymes. A porous, ~19 pL volume vessel has been used in this work to carry out enzyme reactions under varying substrate concentrations. Glucose oxidase and horseradish peroxidase can be contained in these structures and diffusively fed with a solution containing glucose and the fluorogenic substrate Amplex Red through the engineered nanoscale pore structure. Fluorescent microscopy was used to monitor the reaction, which was carried out under microfluidic control. Kinetic characteristics of the enzyme were evaluated and compared with results from conventional scale reactions. These picoliter, nanoporous containers can facilitate quick determination of enzyme kinetics in microfluidic systems without the requirement of surface tethering and can be used for applications in drug discovery, clinical diagnostics and high-throughput screening.

  1. Multilayer Nanoporous Graphene Membranes for Water Desalination.

    Science.gov (United States)

    Cohen-Tanugi, David; Lin, Li-Chiang; Grossman, Jeffrey C

    2016-02-10

    While single-layer nanoporous graphene (NPG) has shown promise as a reverse osmosis (RO) desalination membrane, multilayer graphene membranes can be synthesized more economically than the single-layer material. In this work, we build upon the knowledge gained to date toward single-layer graphene to explore how multilayer NPG might serve as a RO membrane in water desalination using classical molecular dynamic simulations. We show that, while multilayer NPG exhibits similarly promising desalination properties to single-layer membranes, their separation performance can be designed by manipulating various configurational variables in the multilayer case. This work establishes an atomic-level understanding of the effects of additional NPG layers, layer separation, and pore alignment on desalination performance, providing useful guidelines for the design of multilayer NPG membranes.

  2. Capillary rise of water in hydrophilic nanopores

    CERN Document Server

    Gruener, Simon; Wallacher, Dirk; Kityk, Andriy V; Huber, Patrick; 10.1103/PhysRevE.79.067301

    2009-01-01

    We report on the capillary rise of water in three-dimensional networks of hydrophilic silica pores with 3.5nm and 5nm mean radii, respectively (porous Vycor monoliths). We find classical square root of time Lucas-Washburn laws for the imbibition dynamics over the entire capillary rise times of up to 16h investigated. Provided we assume two preadsorbed strongly bound layers of water molecules resting at the silica walls, which corresponds to a negative velocity slip length of -0.5nm for water flow in silica nanopores, we can describe the filling process by a retained fluidity and capillarity of water in the pore center. This anticipated partitioning in two dynamic components reflects the structural-thermodynamic partitioning in strongly silica bound water layers and capillary condensed water in the pore center which is documented by sorption isotherm measurements.

  3. Shale nanopore reconstruction with compressive sensing

    Science.gov (United States)

    Guo, Long; Xiao, Lizhi

    2017-03-01

    With increasing global demand for energy resources, shale gas has been paid considerable attention in recent years. Nanopore geometry is the basis for all microscopic rock physics and petrophysical numerical experiments for shale. At present, nano digital cores can be acquired via thin section reconstruction, nanometer-scale x-ray computed tomography (nano-CT), and focused ion beam and scanning electron microscopy (FIB-SEM). FIB-SEM detects nanoscale pores in the xy-plane with a resolution of up to 0.8 nm voxel‑1, and it is usually provides higher resolution than nano-CT. The main workload associated with FIB-SEM is the need to recut the sample many times and scan every section, with these then being overlaid to create a three-dimensional (3D) pore model. Each cutting distance can be ascertained, but this cannot be controlled precisely because of the fundamental limits of focused ion beams. Many interpolation methods can be used to fit the anisotropy resolution. However, these methods can also alter the geometry of the pores. Nanopores that are close to the limiting resolution are particularly susceptible to stretching. Linear interpolation is likely to lengthen the pores in the low-resolution direction. The subsequent calculation of sensitive physical attributes will be affected by geometric alterations. Through foundational work in the compressive sensing (CS) method, we present a reconstruction workflow for maintaining the pore shape using prior knowledge and reliable information. The images are reassembled with equal distance, so the nanoscale structures can have a resolution of unity in three dimensions.

  4. Automated modelling of signal transduction networks

    Directory of Open Access Journals (Sweden)

    Aach John

    2002-11-01

    Full Text Available Abstract Background Intracellular signal transduction is achieved by networks of proteins and small molecules that transmit information from the cell surface to the nucleus, where they ultimately effect transcriptional changes. Understanding the mechanisms cells use to accomplish this important process requires a detailed molecular description of the networks involved. Results We have developed a computational approach for generating static models of signal transduction networks which utilizes protein-interaction maps generated from large-scale two-hybrid screens and expression profiles from DNA microarrays. Networks are determined entirely by integrating protein-protein interaction data with microarray expression data, without prior knowledge of any pathway intermediates. In effect, this is equivalent to extracting subnetworks of the protein interaction dataset whose members have the most correlated expression profiles. Conclusion We show that our technique accurately reconstructs MAP Kinase signaling networks in Saccharomyces cerevisiae. This approach should enhance our ability to model signaling networks and to discover new components of known networks. More generally, it provides a method for synthesizing molecular data, either individual transcript abundance measurements or pairwise protein interactions, into higher level structures, such as pathways and networks.

  5. Engineering key components in a synthetic eukaryotic signal transduction pathway

    OpenAIRE

    Antunes, Mauricio S; Kevin J Morey; Tewari-Singh, Neera; Bowen, Tessa A.; Smith, J. Jeff; Webb, Colleen T.; Hellinga, Homme W.; Medford, June I.

    2009-01-01

    Signal transduction underlies how living organisms detect and respond to stimuli. A goal of synthetic biology is to rewire natural signal transduction systems. Bacteria, yeast, and plants sense environmental aspects through conserved histidine kinase (HK) signal transduction systems. HK protein components are typically comprised of multiple, relatively modular, and conserved domains. Phosphate transfer between these components may exhibit considerable cross talk between the otherwise apparent...

  6. Calorimeter detectors

    CERN Document Server

    de Barbaro, P; The ATLAS collaboration

    2013-01-01

    Although the instantaneous and integrated luminosity in HL-LHC will be far higher than the LHC detectors were originally designed for, the Barrel calorimeters of the four experiments are expected to continue to perform well  throughout the Phase II program. The conditions for the End-Cap calorimeters are far more challenging and whilst some detectors will require relatively modest changes, others require far more substantial upgrades. We present the results of longevity and performance studies for the calorimeter systems of the four main LHC experiments and outline the upgrade options under consideration. We include a discussion of the R&D required to make the final technology choices for the upgraded detectors.

  7. Pixel detectors

    CERN Document Server

    Passmore, M S

    2001-01-01

    positions on the detector. The loss of secondary electrons follows the profile of the detector and increases with higher energy ions. studies of the spatial resolution predict a value of 5.3 lp/mm. The image noise in photon counting systems is investigated theoretically and experimentally and is shown to be given by Poisson statistics. The rate capability of the LAD1 was measured to be 250 kHz per pixel. Theoretical and experimental studies of the difference in contrast for ideal charge integrating and photon counting imaging systems were carried out. It is shown that the contrast differs and that for the conventional definition (contrast = (background - signal)/background) the photon counting device will, in some cases, always give a better contrast than the integrating system. Simulations in MEDICI are combined with analytical calculations to investigate charge collection efficiencies (CCE) in semiconductor detectors. Different pixel sizes and biasing conditions are considered. The results show charge shari...

  8. Quantifying efficient information transduction of biochemical signaling cascades

    CERN Document Server

    Tsuruyama, Tatsuaki

    2016-01-01

    Cells can be considered as systems that utilize changes in thermodynamic entropy as information. Therefore, they serve as useful models for investigating the relationships between entropy production and information transmission, i.e., signal transduction. Based on the hypothesis that cells apply a chemical reaction cascade for the most efficient transduction of information, we adopted a coding design that minimizes the number of bits per concentration of molecules that are employed for information transduction. As a result, the average rate of entropy production is uniform across all cycles in a cascade reaction. Thus, the entropy production rate can be a valuable measure for the quantification of intracellular signal transduction.

  9. Ion current rectification, limiting and overlimiting conductances in nanopores.

    Directory of Open Access Journals (Sweden)

    Liesbeth van Oeffelen

    Full Text Available Previous reports on Poisson-Nernst-Planck (PNP simulations of solid-state nanopores have focused on steady state behaviour under simplified boundary conditions. These are Neumann boundary conditions for the voltage at the pore walls, and in some cases also Donnan equilibrium boundary conditions for concentrations and voltages at both entrances of the nanopore. In this paper, we report time-dependent and steady state PNP simulations under less restrictive boundary conditions, including Neumann boundary conditions applied throughout the membrane relatively far away from the nanopore. We simulated ion currents through cylindrical and conical nanopores with several surface charge configurations, studying the spatial and temporal dependence of the currents contributed by each ion species. This revealed that, due to slow co-diffusion of oppositely charged ions, steady state is generally not reached in simulations or in practice. Furthermore, it is shown that ion concentration polarization is responsible for the observed limiting conductances and ion current rectification in nanopores with asymmetric surface charges or shapes. Hence, after more than a decade of collective research attempting to understand the nature of ion current rectification in solid-state nanopores, a relatively intuitive model is retrieved. Moreover, we measured and simulated current-voltage characteristics of rectifying silicon nitride nanopores presenting overlimiting conductances. The similarity between measurement and simulation shows that overlimiting conductances can result from the increased conductance of the electric double-layer at the membrane surface at the depletion side due to voltage-induced polarization charges. The MATLAB source code of the simulation software is available via the website http://micr.vub.ac.be.

  10. Ion current rectification, limiting and overlimiting conductances in nanopores.

    Science.gov (United States)

    van Oeffelen, Liesbeth; Van Roy, Willem; Idrissi, Hosni; Charlier, Daniel; Lagae, Liesbet; Borghs, Gustaaf

    2015-01-01

    Previous reports on Poisson-Nernst-Planck (PNP) simulations of solid-state nanopores have focused on steady state behaviour under simplified boundary conditions. These are Neumann boundary conditions for the voltage at the pore walls, and in some cases also Donnan equilibrium boundary conditions for concentrations and voltages at both entrances of the nanopore. In this paper, we report time-dependent and steady state PNP simulations under less restrictive boundary conditions, including Neumann boundary conditions applied throughout the membrane relatively far away from the nanopore. We simulated ion currents through cylindrical and conical nanopores with several surface charge configurations, studying the spatial and temporal dependence of the currents contributed by each ion species. This revealed that, due to slow co-diffusion of oppositely charged ions, steady state is generally not reached in simulations or in practice. Furthermore, it is shown that ion concentration polarization is responsible for the observed limiting conductances and ion current rectification in nanopores with asymmetric surface charges or shapes. Hence, after more than a decade of collective research attempting to understand the nature of ion current rectification in solid-state nanopores, a relatively intuitive model is retrieved. Moreover, we measured and simulated current-voltage characteristics of rectifying silicon nitride nanopores presenting overlimiting conductances. The similarity between measurement and simulation shows that overlimiting conductances can result from the increased conductance of the electric double-layer at the membrane surface at the depletion side due to voltage-induced polarization charges. The MATLAB source code of the simulation software is available via the website http://micr.vub.ac.be.

  11. Regulating Current Rectification and Nanoparticle Transport Through a Salt Gradient in Bipolar Nanopores.

    Science.gov (United States)

    Lin, Chih-Yuan; Yeh, Li-Hsien; Hsu, Jyh-Ping; Tseng, Shiojenn

    2015-09-16

    Tuning of ion and nanoparticle transport is validated through applying a salt gradient in two types of nanopores: the inner wall of a nanopore has bipolar charges and its outer wall neutral (type I), and both the inner and outer walls of a nanopore have bipolar charges (type II). The ion current rectification (ICR) behavior of these nanopores can be regulated by an applied salt gradient: if it is small, the degree of ICR in type II nanopore is more significant than that in type I nanopore; a reversed trend is observed at a sufficiently large salt gradient. If the applied salt gradient and electric field have the same direction, type I nanopore exhibits two significant features that are not observed in type II nanopore: (i) a cation-rich concentration polarization field and an enhanced funneling electric field are present near the cathode side of the nanopore, and (ii) the magnitude of the axial electric field inside the nanopore is reduced. These features imply that applying a salt gradient to type I nanopore is capable of simultaneously enhancing the nanoparticle capture into the nanopore and reducing its translocation velocity inside, so that high sensing performance and resolution can be achieved.

  12. XMASS detector

    CERN Document Server

    Abe, K; Hiraide, K; Hirano, S; Kishimoto, Y; Kobayashi, K; Moriyama, S; Nakagawa, K; Nakahata, M; Nishiie, H; Ogawa, H; Oka, N; Sekiya, H; Shinozaki, A; Suzuki, Y; Takeda, A; Takachio, O; Ueshima, K; Umemoto, D; Yamashita, M; Yang, B S; Tasaka, S; Liu, J; Martens, K; Hosokawa, K; Miuchi, K; Murata, A; Onishi, Y; Otsuka, Y; Takeuchi, Y; Kim, Y H; Lee, K B; Lee, M K; Lee, J S; Fukuda, Y; Itow, Y; Nishitani, Y; Masuda, K; Takiya, H; Uchida, H; Kim, N Y; Kim, Y D; Kusaba, F; Motoki, D; Nishijima, K; Fujii, K; Murayama, I; Nakamura, S

    2013-01-01

    The XMASS project aims to detect dark matter, pp and $^{7}$Be solar neutrinos, and neutrinoless double beta decay using ultra pure liquid xenon. The first phase of the XMASS experiment searches for dark matter. In this paper, we describe the XMASS detector in detail, including its configuration, data acquisition equipment and calibration system.

  13. XMASS detector

    Energy Technology Data Exchange (ETDEWEB)

    Abe, K. [Kamioka Observatory, Institute for Cosmic Ray Research, The University of Tokyo, Higashi-Mozumi, Kamioka, Hida, Gifu 506-1205 (Japan); Kavli Institute for the Physics and Mathematics of the Universe, the University of Tokyo, Kashiwa, Chiba 277-8582 (Japan); Hieda, K. [Kamioka Observatory, Institute for Cosmic Ray Research, The University of Tokyo, Higashi-Mozumi, Kamioka, Hida, Gifu 506-1205 (Japan); Hiraide, K. [Kamioka Observatory, Institute for Cosmic Ray Research, The University of Tokyo, Higashi-Mozumi, Kamioka, Hida, Gifu 506-1205 (Japan); Kavli Institute for the Physics and Mathematics of the Universe, the University of Tokyo, Kashiwa, Chiba 277-8582 (Japan); Hirano, S. [Kamioka Observatory, Institute for Cosmic Ray Research, The University of Tokyo, Higashi-Mozumi, Kamioka, Hida, Gifu 506-1205 (Japan); Kishimoto, Y.; Kobayashi, K.; Moriyama, S. [Kamioka Observatory, Institute for Cosmic Ray Research, The University of Tokyo, Higashi-Mozumi, Kamioka, Hida, Gifu 506-1205 (Japan); Kavli Institute for the Physics and Mathematics of the Universe, the University of Tokyo, Kashiwa, Chiba 277-8582 (Japan); Nakagawa, K. [Kamioka Observatory, Institute for Cosmic Ray Research, The University of Tokyo, Higashi-Mozumi, Kamioka, Hida, Gifu 506-1205 (Japan); Nakahata, M. [Kamioka Observatory, Institute for Cosmic Ray Research, The University of Tokyo, Higashi-Mozumi, Kamioka, Hida, Gifu 506-1205 (Japan); Kavli Institute for the Physics and Mathematics of the Universe, the University of Tokyo, Kashiwa, Chiba 277-8582 (Japan); Nishiie, H. [Kamioka Observatory, Institute for Cosmic Ray Research, The University of Tokyo, Higashi-Mozumi, Kamioka, Hida, Gifu 506-1205 (Japan); Ogawa, H. [Kamioka Observatory, Institute for Cosmic Ray Research, The University of Tokyo, Higashi-Mozumi, Kamioka, Hida, Gifu 506-1205 (Japan); Kavli Institute for the Physics and Mathematics of the Universe, the University of Tokyo, Kashiwa, Chiba 277-8582 (Japan); and others

    2013-07-11

    The XMASS project aims to detect dark matter, pp and {sup 7}Be solar neutrinos, and neutrinoless double beta decay using ultra pure liquid xenon. The first phase of the XMASS experiment searches for dark matter. In this paper, we describe the XMASS detector in detail, including its configuration, data acquisition equipment and calibration system.

  14. Genetics of auditory mechano-electrical transduction.

    Science.gov (United States)

    Michalski, Nicolas; Petit, Christine

    2015-01-01

    The hair bundles of cochlear hair cells play a central role in the auditory mechano-electrical transduction (MET) process. The identification of MET components and of associated molecular complexes by biochemical approaches is impeded by the very small number of hair cells within the cochlea. In contrast, human and mouse genetics have proven to be particularly powerful. The study of inherited forms of deafness led to the discovery of several essential proteins of the MET machinery, which are currently used as entry points to decipher the associated molecular networks. Notably, MET relies not only on the MET machinery but also on several elements ensuring the proper sound-induced oscillation of the hair bundle or the ionic environment necessary to drive the MET current. Here, we review the most significant advances in the molecular bases of the MET process that emerged from the genetics of hearing.

  15. Nonequilibrium phase transitions in biomolecular signal transduction

    Science.gov (United States)

    Smith, Eric; Krishnamurthy, Supriya; Fontana, Walter; Krakauer, David

    2011-11-01

    We study a mechanism for reliable switching in biomolecular signal-transduction cascades. Steady bistable states are created by system-size cooperative effects in populations of proteins, in spite of the fact that the phosphorylation-state transitions of any molecule, by means of which the switch is implemented, are highly stochastic. The emergence of switching is a nonequilibrium phase transition in an energetically driven, dissipative system described by a master equation. We use operator and functional integral methods from reaction-diffusion theory to solve for the phase structure, noise spectrum, and escape trajectories and first-passage times of a class of minimal models of switches, showing how all critical properties for switch behavior can be computed within a unified framework.

  16. Striatal Signal Transduction and Drug Addiction

    Science.gov (United States)

    Philibin, Scott D.; Hernandez, Adan; Self, David W.; Bibb, James A.

    2011-01-01

    Drug addiction is a severe neuropsychiatric disorder characterized by loss of control over motivated behavior. The need for effective treatments mandates a greater understanding of the causes and identification of new therapeutic targets for drug development. Drugs of abuse subjugate normal reward-related behavior to uncontrollable drug-seeking and -taking. Contributions of brain reward circuitry are being mapped with increasing precision. The role of synaptic plasticity in addiction and underlying molecular mechanisms contributing to the formation of the addicted state are being delineated. Thus we may now consider the role of striatal signal transduction in addiction from a more integrative neurobiological perspective. Drugs of abuse alter dopaminergic and glutamatergic neurotransmission in medium spiny neurons of the striatum. Dopamine receptors important for reward serve as principle targets of drugs abuse, which interact with glutamate receptor signaling critical for reward learning. Complex networks of intracellular signal transduction mechanisms underlying these receptors are strongly stimulated by addictive drugs. Through these mechanisms, repeated drug exposure alters functional and structural neuroplasticity, resulting in transition to the addicted biological state and behavioral outcomes that typify addiction. Ca2+ and cAMP represent key second messengers that initiate signaling cascades, which regulate synaptic strength and neuronal excitability. Protein phosphorylation and dephosphorylation are fundamental mechanisms underlying synaptic plasticity that are dysregulated by drugs of abuse. Increased understanding of the regulatory mechanisms by which protein kinases and phosphatases exert their effects during normal reward learning and the addiction process may lead to novel targets and pharmacotherapeutics with increased efficacy in promoting abstinence and decreased side effects, such as interference with natural reward, for drug addiction. PMID

  17. Striatal signal transduction and drug addiction

    Directory of Open Access Journals (Sweden)

    Scott D. Philibin

    2011-09-01

    Full Text Available Drug addiction is a severe neuropsychiatric disorder characterized by loss of control over motivated behavior. The need for effective treatments mandates a greater understanding of the causes and identification of new therapeutic targets for drug development. Drugs of abuse subjugate normal reward-related behavior to uncontrollable drug-seeking and -taking. Contributions of brain reward circuitry are being mapped with increasing precision. The role of synaptic plasticity in addiction and underlying molecular mechanisms contributing to the formation of the addicted state are being delineated. Thus we may now consider the role of striatal signal transduction in addiction from a more integrative neurobiological perspective. Drugs of abuse alter dopaminergic and glutamatergic neurotransmission in medium spiny neurons of the striatum. Dopamine receptors important for reward serve as principle targets of drugs abuse, which interact with glutamate receptor signaling critical for reward learning. Complex networks of intracellular signal transduction mechanisms underlying these receptors are strongly stimulated by addictive drugs. Through these mechanisms, repeated drug exposure alters functional and structural neuroplasticity, resulting in transition to the addicted biological state and behavioral outcomes that typify addiction. Ca2+ and cAMP represent key second messengers that initiate signaling cascades, which regulate synaptic strength and neuronal excitability. Protein phosphorylation and dephosphorylation are fundamental mechanisms underlying synaptic plasticity that are dysregulated by drugs of abuse. Increased understanding of the regulatory mechanisms by which protein kinases and phosphatases exert their effects during normal reward learning and the addiction process may lead to novel targets and pharmacotherapeutics with increased efficacy in promoting abstinence and decreased side effects, such as interference with natural reward, for drug

  18. Synthesis of Nanoporous Metals, Oxides, Carbides, and Sulfides: Beyond Nanocasting.

    Science.gov (United States)

    Luc, Wesley; Jiao, Feng

    2016-07-19

    Nanoporous metal-based solids are of particular interest because they combine a large quantity of surface metal sites, interconnected porous networks, and nanosized crystalline walls, thus exhibiting unique physical and chemical properties compared to other nanostructures and bulk counterparts. Among all of the synthetic approaches, nanocasting has proven to be a highly effective method for the syntheses of metal oxides with three-dimensionally ordered porous structures and crystalline walls. A typical procedure involves a thermal annealing process of a porous silica template filled with an inorganic precursor (often a metal nitrate salt), which converts the precursor into a desired phase within the silica pores. The final step is the selective removal of the silica template in either a strong base or a hydrofluoric acid solution. In the past decade, nanocasting has become a popular synthetic approach and has enabled the syntheses of a variety of nanoporous metal oxides. However, there is still a lack of synthetic methods to fabricate nanoporous materials beyond simple metal oxides. Therefore, the development of new synthetic strategies beyond nanocasting has become an important direction. This Account describes new progress in the preparation of novel nanoporous metal-based solids for heterogeneous catalysis. The discussion begins with a method called dealloying, an effective method to synthesize nanoporous metals. The starting material is a metallic alloy containing two or more elements followed by a selective chemical or electrochemical leaching process that removes one of the preferential elements, resulting in a highly porous structure. Nanoporous metals, such as Cu, Ag, and CuTi, exhibit remarkable electrocatalytic properties in carbon dioxide reduction, oxygen reduction, and hydrogen evolution reactions. In addition, the syntheses of metal oxides with hierarchical porous structures are also discussed. On the basis of the choice of hard template, nanoporous

  19. Fabrication and Modification of Nanoporous Silicon Particles

    Science.gov (United States)

    Ferrari, Mauro; Liu, Xuewu

    2010-01-01

    Silicon-based nanoporous particles as biodegradable drug carriers are advantageous in permeation, controlled release, and targeting. The use of biodegradable nanoporous silicon and silicon dioxide, with proper surface treatments, allows sustained drug release within the target site over a period of days, or even weeks, due to selective surface coating. A variety of surface treatment protocols are available for silicon-based particles to be stabilized, functionalized, or modified as required. Coated polyethylene glycol (PEG) chains showed the effective depression of both plasma protein adsorption and cell attachment to the modified surfaces, as well as the advantage of long circulating. Porous silicon particles are micromachined by lithography. Compared to the synthesis route of the nanomaterials, the advantages include: (1) the capability to make different shapes, not only spherical particles but also square, rectangular, or ellipse cross sections, etc.; (2) the capability for very precise dimension control; (3) the capacity for porosity and pore profile control; and (4) allowance of complex surface modification. The particle patterns as small as 60 nm can be fabricated using the state-of-the-art photolithography. The pores in silicon can be fabricated by exposing the silicon in an HF/ethanol solution and then subjecting the pores to an electrical current. The size and shape of the pores inside silicon can be adjusted by the doping of the silicon, electrical current application, the composition of the electrolyte solution, and etching time. The surface of the silicon particles can be modified by many means to provide targeted delivery and on-site permanence for extended release. Multiple active agents can be co-loaded into the particles. Because the surface modification of particles can be done on wafers before the mechanical release, asymmetrical surface modification is feasible. Starting from silicon wafers, a treatment, such as KOH dipping or reactive ion

  20. Characterization of hydrophobic nanoporous particle liquids for energy absorption

    Science.gov (United States)

    Hsu, Yi; Liu, Yingtao

    2016-04-01

    Recently, the development of hydrophobic nanoporous technologies has drawn increased attention, especially for the applications of energy absorption and impact protection. Although significant amount of research has been conducted to synthesis and characterize materials to protect structures from impact damage, the tradition methods focused on converting kinetic energy to other forms, such as heat and cell buckling. Due to their high energy absorption efficiency, hydrophobic nanoporous particle liquids (NPLs) are one of the most attractive impact mitigation materials. During impact, such particles directly trap liquid molecules inside the non-wetting surface of nanopores in the particles. The captured impact energy is simply stored temporarily and isolated from the original energy transmission path. In this paper we will investigate the energy absorption efficiency of combinations of silica nanoporous particles and with multiple liquids. Inorganic particles, such as nanoporous silica, are characterized using scanning electron microscopy. Small molecule promoters, such as methanol and ethanol, are introduced to the prepared NPLs. Their effects on the energy absorption efficiency are studied in this paper. NPLs are prepared by dispersing the studied materials in deionized water. Energy absorption efficiency of these liquids are experimentally characterized using an Instron mechanical testing frame and in-house develop stainless steel hydraulic cylinder system.

  1. Single molecule transistor based nanopore for the detection of nicotine

    Energy Technology Data Exchange (ETDEWEB)

    Ray, S. J., E-mail: ray.sjr@gmail.com [Institute of Materials Science, Technical University of Darmstadt, Alarich-Weiss-Str. 2, 64287 Darmstadt (Germany)

    2014-12-28

    A nanopore based detection methodology was proposed and investigated for the detection of Nicotine. This technique uses a Single Molecular Transistor working as a nanopore operational in the Coulomb Blockade regime. When the Nicotine molecule is pulled through the nanopore area surrounded by the Source(S), Drain (D), and Gate electrodes, the charge stability diagram can detect the presence of the molecule and is unique for a specific molecular structure. Due to the weak coupling between the different electrodes which is set by the nanopore size, the molecular energy states stay almost unaffected by the electrostatic environment that can be realised from the charge stability diagram. Identification of different orientation and position of the Nicotine molecule within the nanopore area can be made from specific regions of overlap between different charge states on the stability diagram that could be used as an electronic fingerprint for detection. This method could be advantageous and useful to detect the presence of Nicotine in smoke which is usually performed using chemical chromatography techniques.

  2. Nanoporous Pirani sensor based on anodic aluminum oxide

    Science.gov (United States)

    Jeon, Gwang-Jae; Kim, Woo Young; Shim, Hyun Bin; Lee, Hee Chul

    2016-09-01

    A nanoporous Pirani sensor based on anodic aluminum oxide (AAO) is proposed, and the quantitative relationship between the performance of the sensor and the porosity of the AAO membrane is characterized with a theoretical model. The proposed Pirani sensor is composed of a metallic resistor on a suspended nanoporous membrane, which simultaneously serves as the sensing area and the supporting structure. The AAO membrane has numerous vertically-tufted nanopores, resulting in a lower measurable pressure limit due to both the increased effective sensing area and the decreased effective thermal loss through the supporting structure. Additionally, the suspended AAO membrane structure, with its outer periphery anchored to the substrate, known as a closed-type design, is demonstrated using nanopores of AAO as an etch hole without a bulk micromachining process used on the substrate. In a CMOS-compatible process, a 200 μm × 200 μm nanoporous Pirani sensor with porosity of 25% was capable of measuring the pressure from 0.1 mTorr to 760 Torr. With adjustment of the porosity of the AAO, the measurable range could be extended toward lower pressures of more than one decade compared to a non-porous membrane with an identical footprint.

  3. Structure and adsorption of water in nonuniform cylindrical nanopores

    Science.gov (United States)

    Torrie, G. M.; Lakatos, G.; Patey, G. N.

    2010-12-01

    Grand canonical Monte Carlo simulations are used to examine the adsorption and structure of water in the interior of cylindrical nanopores in which the axial symmetry is broken either by varying the radius as a function of position along the pore axis or by introducing regions where the characteristic strength of the water-nanopore interaction is reduced. Using the extended simple point charge (SPC/E) model for water, nanopores with a uniform radius of 6.0 Å are found to fill with water at chemical potentials approximately 0.5 kJ/mol higher than the chemical potential of the saturated vapor. The water in these filled pores exists in either a weakly structured fluidlike state or a highly structured uniformly polarized state composed of a series of stacked water clusters with pentagonal cross sections. This highly structured state can be disrupted by creating hydrophobic regions on the surface of the nanopore, and the degree of disruption can be systematically controlled by adjusting the size of the hydrophobic regions. In particular, hydrophobic banded regions with lengths larger than 9.2 Å result in a complete loss of structure and the formation of a liquid-vapor coexistence in the tube interior. Similarly, the introduction of spatial variation in the nanopore radius can produce two condensation transitions at distinct points along the filling isotherm.

  4. Atomistic simulation of Voronoi-based coated nanoporous metals

    Science.gov (United States)

    Onur Yildiz, Yunus; Kirca, Mesut

    2017-02-01

    In this study, a new method developed for the generation of periodic atomistic models of coated and uncoated nanoporous metals (NPMs) is presented by examining the thermodynamic stability of coated nanoporous structures. The proposed method is mainly based on the Voronoi tessellation technique, which provides the ability to control cross-sectional dimension and slenderness of ligaments as well as the thickness of coating. By the utilization of the method, molecular dynamic (MD) simulations of randomly structured NPMs with coating can be performed efficiently in order to investigate their physical characteristics. In this context, for the purpose of demonstrating the functionality of the method, sample atomistic models of Au/Pt NPMs are generated and the effects of coating and porosity on the thermodynamic stability are investigated by using MD simulations. In addition to that, uniaxial tensile loading simulations are performed via MD technique to validate the nanoporous models by comparing the effective Young’s modulus values with the results from literature. Based on the results, while it is demonstrated that coating the nanoporous structures slightly decreases the structural stability causing atomistic configurational changes, it is also shown that the stability of the atomistic models is higher at lower porosities. Furthermore, adaptive common neighbour analysis is also performed to identify the stabilized atomistic structure after the coating process, which provides direct foresights for the mechanical behaviour of coated nanoporous structures.

  5. Antibacterial hemostatic dressings with nanoporous bioglass containing silver

    Directory of Open Access Journals (Sweden)

    Hu G

    2012-05-01

    Full Text Available Gangfeng Hu,1 Luwei Xiao,2 Peijian Tong,2 Dawei Bi,1 Hui Wang,1 Haitao Ma,1 Gang Zhu,1 Hui Liu21The First People’s Hospital of Xiaoshan, Hangzhou, China; 2Zhejiang Traditional Chinese Medical University, Hangzhou, ChinaAbstract: Nanoporous bioglass containing silver (n-BGS was fabricated using the sol-gel method, with cetyltrimethyl ammonium bromide as template. The results showed that n-BGS with nanoporous structure had a surface area of 467 m2/g and a pore size of around 6 nm, and exhibited a significantly higher water absorption rate compared with BGS without nanopores. The n-BGS containing small amounts of silver (Ag had a slight effect on its surface area. The n-BGS containing 0.02 wt% Ag, without cytotoxicity, had a good antibacterial effect on Escherichia coli, and its antibacterial rate reached 99% in 12 hours. The n-BGS’s clotting ability significantly decreased prothrombin time (PT and activated partial thromboplastin time (APTT, indicating n-BGS with a higher surface area could significantly promote blood clotting (by decreasing clotting time compared with BGS without nanopores. Effective hemostasis was achieved in skin injury models, and bleeding time was reduced. It is suggested that n-BGS could be a good dressing, with antibacterial and hemostatic properties, which might shorten wound bleeding time and control hemorrhage.Keywords: antibacterial, bioglass, cytotoxicity, dressing, hemostasis, nanopore, silver

  6. Semiconductor Detectors; Detectores de Semiconductores

    Energy Technology Data Exchange (ETDEWEB)

    Cortina, E.

    2007-07-01

    Particle detectors based on semiconductor materials are among the few devices used for particle detection that are available to the public at large. In fact we are surrounded by them in our daily lives: they are used in photoelectric cells for opening doors, in digital photographic and video camera, and in bar code readers at supermarket cash registers. (Author)

  7. MspA nanopores from subunit dimers.

    Directory of Open Access Journals (Sweden)

    Mikhail Pavlenok

    Full Text Available Mycobacterium smegmatis porin A (MspA forms an octameric channel and represents the founding member of a new family of pore proteins. Control of subunit stoichiometry is important to tailor MspA for nanotechnological applications. In this study, two MspA monomers were connected by linkers ranging from 17 to 62 amino acids in length. The oligomeric pore proteins were purified from M. smegmatis and were shown to form functional channels in lipid bilayer experiments. These results indicated that the peptide linkers did not prohibit correct folding and localization of MspA. However, expression levels were reduced by 10-fold compared to wild-type MspA. MspA is ideal for nanopore sequencing due to its unique pore geometry and its robustness. To assess the usefulness of MspA made from dimeric subunits for DNA sequencing, we linked two M1-MspA monomers, whose constriction zones were modified to enable DNA translocation. Lipid bilayer experiments demonstrated that this construct also formed functional channels. Voltage gating of MspA pores made from M1 monomers and M1-M1 dimers was identical indicating similar structural and dynamic channel properties. Glucose uptake in M. smegmatis cells lacking porins was restored by expressing the dimeric mspA M1 gene indicating correct folding and localization of M1-M1 pores in their native membrane. Single-stranded DNA hairpins produced identical ionic current blockades in pores made from monomers and subunit dimers demonstrating that M1-M1 pores are suitable for DNA sequencing. This study provides the proof of principle that production of single-chain MspA pores in M. smegmatis is feasible and paves the way for generating MspA pores with altered stoichiometries. Subunit dimers enable better control of the chemical and physical properties of the constriction zone of MspA. This approach will be valuable both in understanding transport across the outer membrane in mycobacteria and in tailoring MspA for nanopore

  8. FCJ-124 Interactive Environments as Fields of Transduction

    Directory of Open Access Journals (Sweden)

    Cristoph Brunner

    2011-10-01

    Full Text Available This article proposes a critical inquiry of interactive environments as fields of transduction. It is argued that Gilbert Simondon’s concepts of individuation, transduction, in-formation, the preindividual, and the associated milieu enable a processual thinking of the analysis and design of interactive technologies as technogenetic emergence. These concepts offer a way for interaction design to understand interactive environments through the dynamics between fields of transduction and fields of experience in relational and affective terms. The article analyses the way in which two technological assemblages, Voz Alta and the Impossible Room, provide different experiential fields experimenting with the transductive power of digital and interactive media. We emphasise the potential for creating new modes of experience. Our aim is to underline the necessary convergences between practices of design and thought; to enable affectively engaging fields of transduction.

  9. Transductive versions of the LASSO and the Dantzig Selector

    CERN Document Server

    Alquier, Pierre

    2010-01-01

    Transductive methods are useful in prediction problems when the training dataset is composed of a large number of unlabeled observations and a smaller number of labeled observations. In this paper, we propose an approach for developing transductive prediction procedures that are able to take advantage of the sparsity in the high dimensional linear regression. More precisely, we define transductive versions of the LASSO and the Dantzig Selector . These procedures combine labeled and unlabeled observations of the training dataset to produce a prediction for the unlabeled observations. We propose an experimental study of the transductive estimators, that shows that they improve the LASSO and Dantzig Selector in many situations, and particularly in high dimensional problems when the predictors are correlated. We then provide non-asymptotic theoretical guarantees for these estimation methods. Interestingly, our theoretical results show that the Transductive LASSO and Dantzig Selector satisfy sparsity inequalities ...

  10. The Membrane and Lipids as Integral Participants in Signal Transduction: Lipid Signal Transduction for the Non-Lipid Biochemist

    Science.gov (United States)

    Eyster, Kathleen M.

    2007-01-01

    Reviews of signal transduction have often focused on the cascades of protein kinases and protein phosphatases and their cytoplasmic substrates that become activated in response to extracellular signals. Lipids, lipid kinases, and lipid phosphatases have not received the same amount of attention as proteins in studies of signal transduction.…

  11. Mapping the ion current distribution in nanopore/electrode devices.

    Science.gov (United States)

    Rutkowska, Agnieszka; Edel, Joshua B; Albrecht, Tim

    2013-01-22

    Solid-state nanopores with integrated electrodes have interesting prospects in next-generation single-molecule biosensing and sequencing. These include "gated" nanopores with a single electrode integrated into the membrane, as well as two-electrode designs, such as a transversal tunneling junction. Here we report the first comprehensive analysis of current flow in a three-electrode device as a model for this class of sensors. As a new feature, we observe apparent rectification in the pore current that is rooted in the current distribution of the cell, rather than the geometry or electrostatics of the pore. We benchmark our results against a recently developed theoretical model and define operational parameters for nanopore/electrode structures. Our findings thus facilitate the rational design of such sensor devices.

  12. Multistep Current Signal in Protein Translocation through Graphene Nanopores

    KAUST Repository

    Bonome, Emma Letizia

    2015-05-07

    © 2015 American Chemical Society. In nanopore sensing experiments, the properties of molecules are probed by the variation of ionic currents flowing through the nanopore. In this context, the electronic properties and the single-layer thickness of graphene constitute a major advantage for molecule characterization. Here we analyze the translocation pathway of the thioredoxin protein across a graphene nanopore, and the related ionic currents, by integrating two nonequilibrium molecular dynamics methods with a bioinformatic structural analysis. To obtain a qualitative picture of the translocation process and to identify salient features we performed unsupervised structural clustering on translocation conformations. This allowed us to identify some specific and robust translocation intermediates, characterized by significantly different ionic current flows. We found that the ion current strictly anticorrelates with the amount of pore occupancy by thioredoxin residues, providing a putative explanation of the multilevel current scenario observed in recently published translocation experiments.

  13. Logic Gate Operation by DNA Translocation through Biological Nanopores.

    Directory of Open Access Journals (Sweden)

    Hiroki Yasuga

    Full Text Available Logical operations using biological molecules, such as DNA computing or programmable diagnosis using DNA, have recently received attention. Challenges remain with respect to the development of such systems, including label-free output detection and the rapidity of operation. Here, we propose integration of biological nanopores with DNA molecules for development of a logical operating system. We configured outputs "1" and "0" as single-stranded DNA (ssDNA that is or is not translocated through a nanopore; unlabeled DNA was detected electrically. A negative-AND (NAND operation was successfully conducted within approximately 10 min, which is rapid compared with previous studies using unlabeled DNA. In addition, this operation was executed in a four-droplet network. DNA molecules and associated information were transferred among droplets via biological nanopores. This system would facilitate linking of molecules and electronic interfaces. Thus, it could be applied to molecular robotics, genetic engineering, and even medical diagnosis and treatment.

  14. Investigation and Characterisation of Resizeable Nanopores in an Elastomeric Membrane

    Science.gov (United States)

    Willmott, Geoff

    2008-03-01

    Experimental and theoretical work relating to the development of resizeable synthetic nanopores will be presented. The nanopores, which are roughly conical, are formed by puncturing a relatively thick (˜250 μm) elastomeric membrane with an STM tip. The aperture can be closed and the size can be dynamically controlled by stretching the elastomer [1]. Use of this technology presents a collection of interesting physical problems, covering topics that include the failure and mechanical properties of the elastomer, flow of ionic current through the aperture and particle sensing using the resistive pulse technique. Synthetic nanopores have potential applications in many fields, but especially relating to nanoscale sensing and diagnostic devices, and replication of ion channels in living cells. [1] S. J. Sowerby, M. F. Broom, G. B. Petersen, Dynamically Resizable Nanometre-Scale Apertures for Molecular Sensing, Sensors and Actuators B: Chemical 123 (1), pp. 325-330 (2007)

  15. Solid-State Nanopore-Based DNA Sequencing Technology

    Directory of Open Access Journals (Sweden)

    Zewen Liu

    2016-01-01

    Full Text Available The solid-state nanopore-based DNA sequencing technology is becoming more and more attractive for its brand new future in gene detection field. The challenges that need to be addressed are diverse: the effective methods to detect base-specific signatures, the control of the nanopore’s size and surface properties, and the modulation of translocation velocity and behavior of the DNA molecules. Among these challenges, the realization of the high-quality nanopores with the help of modern micro/nanofabrication technologies is a crucial one. In this paper, typical technologies applied in the field of solid-state nanopore-based DNA sequencing have been reviewed.

  16. Catalytic Rapid Pyrolysis of Quercus variabilis over Nanoporous Catalysts

    Directory of Open Access Journals (Sweden)

    Hyeon Koo Kang

    2015-01-01

    Full Text Available Catalytic rapid pyrolysis of Quercus variabilis, a Korean native tree species, was carried out using Py-GC/MS. Mesoporous MFI, which has both nanopores and micropores, and three nanoporous materials, Al-MCM-41, Al-SBA-15, and γ-Al2O3, were used as the catalyst. The acid sites of mesoporous MFI were strong Brønsted acid sites, whereas those of nanoporous materials were mostly weak acid sites. The composition of the product bio-oil varied greatly depending on the acid characteristics of the catalyst used. Phenolics were the most abundant species in the bio-oil, followed by acids and furanics, obtained over Al-MCM-41 or Al-SBA-15 with weak acid sites, whereas aromatics were the most abundant species produced over mesoporous MFI with strong acid sites, followed by phenolics. Aromatics, phenolics, and furanics are all important chemicals contributing to the improvement of bio-oil quality.

  17. Noise and its reduction in graphene based nanopore devices.

    Science.gov (United States)

    Kumar, Ashvani; Park, Kyeong-Beom; Kim, Hyun-Mi; Kim, Ki-Bum

    2013-12-13

    Ionic current fluctuations in graphene nanopore devices are a ubiquitous phenomenon and are responsible for degraded spatial and temporal resolution. Here, we descriptively investigate the impact of different substrate materials (Si and quartz) and membrane thicknesses on noise characteristics of graphene nanopore devices. To mitigate the membrane fluctuations and pin-hole defects, a SiNx membrane is transferred onto the substrate and a pore of approximately 70 nm in diameter is perforated prior to the graphene transfer. Comprehensive noise study reveals that the few layer graphene transferred onto the quartz substrate possesses low noise level and higher signal to noise ratio as compared to single layer graphene, without deteriorating the spatial resolution. The findings here point to improvement of graphene based nanopore devices for exciting opportunities in future single-molecule genomic screening devices.

  18. Transport behavior of water molecules through two-dimensional nanopores

    Energy Technology Data Exchange (ETDEWEB)

    Zhu, Chongqin; Li, Hui; Meng, Sheng, E-mail: smeng@iphy.ac.cn [Beijing National Laboratory for Condensed Matter Physics and Institute of Physics, Chinese Academy of Sciences, Beijing 100190 (China)

    2014-11-14

    Water transport through a two-dimensional nanoporous membrane has attracted increasing attention in recent years thanks to great demands in water purification and desalination applications. However, few studies have been reported on the microscopic mechanisms of water transport through structured nanopores, especially at the atomistic scale. Here we investigate the microstructure of water flow through two-dimensional model graphene membrane containing a variety of nanopores of different size by using molecular dynamics simulations. Our results clearly indicate that the continuum flow transits to discrete molecular flow patterns with decreasing pore sizes. While for pores with a diameter ≥15 Å water flux exhibits a linear dependence on the pore area, a nonlinear relationship between water flux and pore area has been identified for smaller pores. We attribute this deviation from linear behavior to the presence of discrete water flow, which is strongly influenced by the water-membrane interaction and hydrogen bonding between water molecules.

  19. Transport behavior of water molecules through two-dimensional nanopores

    Science.gov (United States)

    Zhu, Chongqin; Li, Hui; Meng, Sheng

    2014-11-01

    Water transport through a two-dimensional nanoporous membrane has attracted increasing attention in recent years thanks to great demands in water purification and desalination applications. However, few studies have been reported on the microscopic mechanisms of water transport through structured nanopores, especially at the atomistic scale. Here we investigate the microstructure of water flow through two-dimensional model graphene membrane containing a variety of nanopores of different size by using molecular dynamics simulations. Our results clearly indicate that the continuum flow transits to discrete molecular flow patterns with decreasing pore sizes. While for pores with a diameter ≥15 Å water flux exhibits a linear dependence on the pore area, a nonlinear relationship between water flux and pore area has been identified for smaller pores. We attribute this deviation from linear behavior to the presence of discrete water flow, which is strongly influenced by the water-membrane interaction and hydrogen bonding between water molecules.

  20. Deformation mechanism of nanoporous materials upon water freezing and melting

    Science.gov (United States)

    Erko, Maxim; Wallacher, Dirk; Paris, Oskar

    2012-10-01

    Temperature-induced non-monotonous reversible deformation of water-filled nanoporous silica materials is investigated experimentally using in-situ small-angle x-ray scattering. The influence of freezing and melting in the nanopores on this deformation is treated quantitatively by introducing a simple model based on the Gibbs-Thomson equation and a generalized Laplace-pressure. The physical origin of the melting/freezing induced pore lattice deformation is found to be exactly the same as for capillary condensation/evaporation, namely the curved phase boundary due to the preferred wetting of the pore walls by the liquid phase. As a practical implication, elastic properties of the nanoporous framework can be determined from the temperature-deformation curves.

  1. Enhanced potassium selectivity in a bioinspired solid nanopore.

    Science.gov (United States)

    Picaud, Fabien; Kraszewski, Sebastian; Ramseyer, Christophe; Balme, Sébastien; Déjardin, Philippe; Janot, Jean Marc; Henn, François

    2013-12-01

    Biological ion channels present unique ionic properties. They can be highly permeable to ions, while selecting only one type of ions, without external energy supply. An important research field has been developed to transfer these properties to solid state nanoporous membranes in order to develop artificial biomimetic nanofilters. One of the promising ways to develop biomimetic structures is based on the direct insertion of the gramicidin A, i.e. an ionic channel, inside a nanopore. Experiments have recently proved the feasibility of such a hybrid membrane with very interesting results regarding the ionic selectivity. Here, we propose to interpret these experiments using theoretical molecular dynamic simulations which allow us to analyze more profoundly the structures of the proteins confined inside the nanopore and the relation between their conformation and the observed ionic properties.

  2. Theory of Sorption Hysteresis in Nanoporous Solids: II. Molecular condensation

    CERN Document Server

    Bazant, Martin Z

    2011-01-01

    Motivated by the puzzle of sorption hysteresis in Portland cement concrete or cement paste, we develop in Part II of this study a general theory of vapor sorption and desorption from nanoporous solids, which attributes hysteresis to hindered molecular condensation with attractive lateral interactions. The classical mean-field theory of van der Waals is applied to predict the dependence of hysteresis on temperature and pore size, using the regular solution model and gradient energy of Cahn and Hilliard. A simple "hierarchical wetting" model for thin nanopores is developed to describe the case of strong wetting by the first monolayer, followed by condensation of nanodroplets and nanobubbles in the bulk. The model predicts a larger hysteresis critical temperature and enhanced hysteresis for molecular condensation across nanopores at high vapor pressure than within monolayers at low vapor pressure. For heterogeneous pores, the theory predicts sorption/desorption sequences similar to those seen in molecular dynami...

  3. Engineered/tailored nanoporous gold structures for infrared plasmonics

    Science.gov (United States)

    Garoli, Denis; Calandrini, Eugenio; Cattarin, Sandro; Barison, Simona; Zilio, Pierfrancesco; Bozzola, Angelo; Toma, Andrea; De Angelis, Francesco

    2015-08-01

    Nanoporous gold is a very promising and novel material platform for mid-infrared and THz plasmonics. Nanoporous gold can be formed by dealloying of Au-Ag alloys, previously grown by means of Ag-Au co-sputtering. The optical response is completely determined by the nanostructural film features, that depends on the initial alloy composition and on the preparation procedure. The behavior of the material in mid-infrared and its peculiar morphology with a very high surface/volume ratio can be applied for nanostructure fabrication, such for example nanoantennas. Here we report the design and fabrication of nanoporous antennas engineered to support resonances in the 1500-1700 cm-1 range where them can be exploited, for example, in the detection of protein conformational states. This novel paradigm points toward the development of a new class of efficient and high-selective biosensors.

  4. A tip-attached tuning fork sensor for the control of DNA translocation through a nanopore

    Science.gov (United States)

    Hyun, Changbae; Kaur, Harpreet; Huang, Tao; Li, Jiali

    2017-02-01

    In this work, we demonstrate that a tuning fork can be used as a force detecting sensor for manipulating DNA molecules and for controlling the DNA translocation rate through a nanopore. One prong of a tuning fork is glued with a probe tip which DNA molecules can be attached to. To control the motion and position of the tip, the tuning fork is fixed to a nanopositioning system which has sub-nanometer position control. A fluidic chamber is designed to fulfill many requirements for the experiment: for the access of a DNA-attached tip approaching to a nanopore, for housing a nanopore chip, and for measuring ionic current through a solid-state nanopore with a pair of electrodes. The location of a nanopore is first observed by transmission electron microscopy, and then is determined inside the liquid chambers with an optical microscope combined with local scanning the probe tip on the nanopore surface. When a DNA-immobilized tip approaches a membrane surface near a nanopore, free ends of the immobilized DNA strings can be pulled and trapped into the pore by an applied voltage across the nanopore chip, resulting in an ionic current reduction through the nanopore. The trapped DNA molecules can be lifted up from the nanopore at a user controlled speed. This integrated apparatus allows manipulation of biomolecules (DNA, RNA, and proteins) attached to a probe tip with sub-nanometer precision, and simultaneously allows measurement of the biomolecules by a nanopore device.

  5. Optical observation of DNA translocation through Al2O3 sputtered silicon nanopores in porous membrane

    Science.gov (United States)

    Yamazaki, Hirohito; Ito, Shintaro; Esashika, Keiko; Taguchi, Yoshihiro; Saiki, Toshiharu

    2016-03-01

    Nanopore sensors are being developed as a platform for analyzing single DNA, RNA, and protein. In nanopore sensors, ionic current measurement is widely used and proof-of-concept of nanopore DNA sequencing by it has been demonstrated by previous studies. Recently, we proposed an alternative platform of nanopore DNA sequencing that incorporates ultraviolet light and porous silicon membrane to perform high-throughput measurement. In the development of our DNA sequencing platform, controlling nanopore size in porous silicon membrane is essential but remains a challenge. Here, we report on observation of DNA translocation through Al2O3 sputtered silicon nanopores (Al2O3 nanopores) by our optical scheme. Electromagnetic wave simulation was performed to analyze the excitation volume on Al2O3 nanopores generated by focused ultraviolet light. In the experiment, DNA translocation time through Al2O3 nanopores was compared with that of silicon nanopores and we examined the effect of nanopore density and thickness of membrane by supplementing the static electric field simulation.

  6. Enzyme Reactions in Nanoporous, Picoliter Volume Containers

    Science.gov (United States)

    Siuti, Piro; Retterer, Scott T.; Choi, Chang-Kyoung; Doktycz, Mitchel J.

    2012-01-01

    Advancements in nanoscale fabrication allow creation of small volume reaction containers that can facilitate the screening and characterization of enzymes. A porous, ~19 pL volume vessel has been used in this work to carry out enzyme reactions under varying substrate concentrations. Assessment of small molecule and Green Fluorescent Protein diffusion from the vessels indicates that pore sizes on order of 10 nm can be obtained, allowing capture of proteins and diffusive exchange of small molecules. Glucose oxidase and horseradish peroxidase can be contained in these structures and diffusively fed with a solution containing glucose and the fluorogenic substrate Amplex Red™ through the engineered nanoscale pore structure. Fluorescent microscopy was used to monitor the reaction, which was carried out under microfluidic control. Kinetic characteristics of the enzyme (Km and Vmax) were evaluated and compared with results from conventional scale reactions. These picoliter, nanoporous containers can facilitate quick determination of enzyme kinetics in microfluidic systems without the requirement of surface tethering and can be used for applications in drug discovery, clinical diagnostics and high-throughput screening. PMID:22148720

  7. Electroosmotic access resistance of a nanopore

    Science.gov (United States)

    Ghosal, Sandip; Sherwood, John D.; Mao, Mao

    2014-11-01

    Electroosmotic flow through a nanopore that traverses a dielectric membrane with a fixed surface charge density is considered. In the limit where the surface charge is small and the applied electric field weak, the reciprocal theorem is used to derive an expression for the electroosmotic flux through the pore up to quadratures over the fluid volume. Thus, an ``electroosmotic conductance'' (the fluid flux per unit applied voltage) may be defined in analogy to the corresponding electrical conductance of a hole in an insulating membrane immersed in a uniform conductor. In the limit when the membrane is thick compared to the pore diameter, the usual result for the electroosmotic conductance through long cylindrical channels (which varies inversely as the membrane thickness) is recovered. The electroosmotic conductance is shown to approach a finite value for an infinitely thin membrane: this residual electroosmotic resistance (inverse of conductance) is analogous to the concept of ``access resistance of a pore'' in the corresponding electrical problem. The dependence of the electroosmotic conductance on pore radius, Debye length and membrane thickness is investigated. Reference: Supported by the NIH under Grant 4R01HG004842. SG acknowledges a visiting professorship at Cambridge University funded by the Leverhulme Trust, UK. JDS thanks DAMTP (Cambridge University) and Institut de Mecanique des Fluides de Toulouse for hospitality.

  8. Environmental Green Chemistry Applications of Nanoporous Carbons

    Energy Technology Data Exchange (ETDEWEB)

    Matos, J.; Garcia, A; Poon, P

    2010-01-01

    Influence of surface properties of nanoporous carbons on activity and selectivity during the photooxidation of 4-chlorophenol on UV-irradiated TiO{sub 2} was performed. Characterization by infrared spectroscopy, X-ray photoelectronic spectroscopy and X-ray absorption near edge structure spectroscopy confirm the presence of a contact interface between both solids and suggest the coordination of some functional organic groups of the carbon surface, mainly ethers and carboxylic acids, to metallic centre Ti{sup +4} in TiO{sub 2}. Changes in surface pH of carbons from basic to neutral or acid remarkably increase the production of 4-chlorocathecol by a factor of 22 on TiO{sub 2}-Carbon in comparison of TiO{sub 2} alone. A scheme of interaction between TiO{sub 2} and carbon is proposed to the increased photoactivity of TiO{sub 2} and a reaction mechanism for the different intermediate products detected is also proposed. Results showed that TiO{sub 2}-Carbon can be used as an alternative photocatalyst for environmental green chemistry and selective organic synthesis applications.

  9. Diffusive Silicon Nanopore Membranes for Hemodialysis Applications.

    Directory of Open Access Journals (Sweden)

    Steven Kim

    Full Text Available Hemodialysis using hollow-fiber membranes provides life-sustaining treatment for nearly 2 million patients worldwide with end stage renal disease (ESRD. However, patients on hemodialysis have worse long-term outcomes compared to kidney transplant or other chronic illnesses. Additionally, the underlying membrane technology of polymer hollow-fiber membranes has not fundamentally changed in over four decades. Therefore, we have proposed a fundamentally different approach using microelectromechanical systems (MEMS fabrication techniques to create thin-flat sheets of silicon-based membranes for implantable or portable hemodialysis applications. The silicon nanopore membranes (SNM have biomimetic slit-pore geometry and uniform pores size distribution that allow for exceptional permeability and selectivity. A quantitative diffusion model identified structural limits to diffusive solute transport and motivated a new microfabrication technique to create SNM with enhanced diffusive transport. We performed in vitro testing and extracorporeal testing in pigs on prototype membranes with an effective surface area of 2.52 cm2 and 2.02 cm2, respectively. The diffusive clearance was a two-fold improvement in with the new microfabrication technique and was consistent with our mathematical model. These results establish the feasibility of using SNM for hemodialysis applications with additional scale-up.

  10. Rapid, Simultaneous Multianalyte Detection with a Nanopore

    Science.gov (United States)

    Kasianowicz, John; Henrickson, Sarah; Robertson, Baldwin; Weetall, Howard

    2000-03-01

    The ability to rapidly and simultaneously quantitate many analytes represents the next frontier in sensing. This capability would have a great impact on the cost and feasibility of analyzing blood, detecting pathogens and toxins in drinking water as well as chemical and biological warfare agents. In addition to performing transport and defense functions in cells and organelles, pore-forming proteins (ionic channels) act as sensors by converting the concentration of an analyte into a change in the pore’s conductance. Recently, several groups, including ours, suggested that channels placed in artificial membranes might prove useful for detecting analytes. Unfortunately, molecules that alter native channel conductance are limited to a small number of highly specific classes (e.g. neurotransmitters, anesthetics, protons or deuterium ions). Thus, steps towards adapting channels for more generalized analyte detection have placed recognition sites inside a channel, adjacent to the pore’s mouth or well outside the pore. We demonstrated that a wide variety of analytes could be simultaneously detected by a simpler system. Instead of attaching the recognition element inside a narrow channel, it is covalently linked to a polymer that threads completely through a nanopore.

  11. Thermal Stability of Nanoporous Raney Gold Catalyst

    Directory of Open Access Journals (Sweden)

    Matthew C. Tai

    2015-07-01

    Full Text Available Nanoporous “Raney gold” sponge was prepared by de-alloying an Au-Al precursor alloy. Catalytic tests using a micro-reactor confirmed that Raney gold can serve as an active heterogeneous catalyst for CO oxidation, reduction of NO to N2, and oxidation of NO to NO2. In general, the specific surface area of a heterogeneous catalyst has an influence on its catalytic efficacy. Unfortunately, gold sponges coarsen readily, leading to sintering of their structure and reduction in surface area. This potentially places constraints on their upper operating temperature in catalytic reactors. Here we analyzed the behavior of Raney gold when the temperature was raised. We examined the kinetics and mechanism of coarsening of the sponge using a combination of in situ optical measurements and Metropolis Monte Carlo modeling with a Lennard-Jones interatomic potential. Modeling showed that the sponges started with an isotropic “foamy” morphology with negative average “mean curvature” but that subsequent thermally activated coarsening will drive the morphology through a bi-continuous fibrous state and on, eventually, to a sponge consisting of sintered blobs of predominantly positive “mean curvature”.

  12. Phonon bottleneck identification in disordered nanoporous materials

    Science.gov (United States)

    Romano, Giuseppe; Grossman, Jeffrey C.

    2017-09-01

    Nanoporous materials are a promising platform for thermoelectrics in that they offer high thermal conductivity tunability while preserving good electrical properties, a crucial requirement for high-efficiency thermal energy conversion. Understanding the impact of the pore arrangement on thermal transport is pivotal to engineering realistic materials, where pore disorder is unavoidable. Although there has been considerable progress in modeling thermal size effects in nanostructures, it has remained a challenge to screen such materials over a large phase space due to the slow simulation time required for accurate results. We use density functional theory in connection with the Boltzmann transport equation to perform calculations of thermal conductivity in disordered porous materials. By leveraging graph theory and regressive analysis, we identify the set of pores representing the phonon bottleneck and obtain a descriptor for thermal transport, based on the sum of the pore-pore distances between such pores. This approach provide a simple tool to estimate phonon suppression in realistic porous materials for thermoelectric applications and enhance our understanding of heat transport in disordered materials.

  13. Electroanalysis using modified hierarchical nanoporous carbon materials.

    Science.gov (United States)

    Rodriguez, Rusbel Coneo; Moncada, Angelica Baena; Acevedo, Diego F; Planes, Gabriel A; Miras, Maria C; Barbero, Cesar A

    2013-01-01

    The role of the electrode nanoporosity in electroanalytical processes is discussed and specific phenomena (slow double layer charging, local pH effects) which can be present in porous electrode are described. Hierarchical porous carbon (HPC) materials are synthesized using a hard template method. The three dimensional carbon porosity is examined using scanning electron microscopy on flat surfaces cut using a focused ion beam (FIB-SEM). The electrochemical properties of the HPC are measured using cyclic voltammetry, AC impedance, chronoamperometry and Probe Beam Deflection (PBD) techniques. Chronoamperometry measurements of HPC seems to fit a transmission line model. PBD data show evidence of local pH changes inside the pores, during double layer charging. The HPC are modified by in situ (chemical or electrochemical) formation of metal (Pt/Ru) or metal oxide (CoOx, Fe3O4) nanoparticles. Additionally, HPC loaded with Pt decorated magnetite (Fe3O4) nanoparticles is produced by galvanic displacement. The modified HPC materials are used for the electroanalysis of different substances (CO, O2, AsO3(-3)). The role of the nanoporous carbon substrate in the electroanalytical data is evaluated.

  14. Structure-dependent water transport across nanopores of carbon nanotubes: toward selective gating upon temperature regulation.

    Science.gov (United States)

    Zhao, Kuiwen; Wu, Huiying

    2015-04-28

    Determining water structure in nanopores and its influence on water transport behaviour is of great importance for understanding and regulating the transport across nanopores. Here we report an ultrafast-slow flow transition phenomenon for water transport across nanopores of carbon nanotubes owing to the change in water structure in nanopores induced by temperature. By performing extensive molecular dynamics simulations, we show the dependence of water transport behaviours on water structures. Our results indicate that owing to the change in water structure in nanopores, water flux across nanopores with certain pore sizes decreases sharply (nearly 3 orders of magnitude) with the decreasing temperature. This phenomenon is very sensitive to the pore size. The threshold temperatures for the occurrence of the ultrafast-slow flow transition for water transport are also determined for various pore sizes. These findings suggest a novel protocol for selective gating of water and proton conduction across nanopores and temperature-controlled drug release.

  15. Wet-chemical enzymatic preparation and characterization of ultrathin gold-decorated single glass nanopore.

    Science.gov (United States)

    He, Haili; Xu, Xiaolong; Jin, Yongdong

    2014-05-20

    The conical glass nanopore was modified through layer-by-layer electrostatic deposition of a monolayer of glucose oxidase, and then an ultrathin gold film was formed in situ through enzyme-catalyzed reactions. The morphology and components of single glass nanopore before and after ultrathin Au deposition were characterized by transmission electron microscopy (TEM) and energy-dispersive X-ray (EDX) analysis, respectively. In particular, the quenching of the quantum dots fluorescence in the nanopore tip zone further illustrated that the gold nanofilm was successfully deposited on the inner wall of the single glass nanopore. The Au thin films make the glass nanopores more biologically friendly and allow the nanopores facile functionalization of the surface through the Au-S bonds. For instance, the ionic current rectification (ICR) properties of the gold-decorated glass nanopores could be switched readily at different pHs by introducing different thiol molecules.

  16. Influence of nanopore surface charge and magnesium ion on polyadenosine translocation.

    Science.gov (United States)

    Lepoitevin, Mathilde; Coulon, Pierre Eugène; Bechelany, Mikhael; Cambedouzou, Julien; Janot, Jean-Marc; Balme, Sebastien

    2015-04-10

    We investigate the influence of a nanopore surface state and the addition of Mg(2+) on poly-adenosine translocation. To do so, two kinds of nanopores with a low aspect ratio (diameter ∼3-5 nm, length 30 nm) were tailored: the first one with a negative charge surface and the second one uncharged. It was shown that the velocity and the energy barrier strongly depend on the nanopore surface. Typically if the nanopore and polyA exhibit a similar charge, the macromolecule velocity increases and its global energy barrier of entrance in the nanopore decreases, as opposed to the non-charged nanopore. Moreover, the addition of a divalent chelating cation induces an increase of energy barrier of entrance, as expected. However, for a negative nanopore, this effect is counterbalanced by the inversion of the surface charge induced by the adsorption of divalent cations.

  17. Boosting infrared energy transfer in 3D nanoporous gold antennas.

    Science.gov (United States)

    Garoli, D; Calandrini, E; Bozzola, A; Ortolani, M; Cattarin, S; Barison, S; Toma, A; De Angelis, F

    2017-01-05

    The applications of plasmonics to energy transfer from free-space radiation to molecules are currently limited to the visible region of the electromagnetic spectrum due to the intrinsic optical properties of bulk noble metals that support strong electromagnetic field confinement only close to their plasma frequency in the visible/ultraviolet range. In this work, we show that nanoporous gold can be exploited as a plasmonic material for the mid-infrared region to obtain strong electromagnetic field confinement, co-localized with target molecules into the nanopores and resonant with their vibrational frequency. The effective optical response of the nanoporous metal enables the penetration of optical fields deep into the nanopores, where molecules can be loaded thus achieving a more efficient light-matter coupling if compared to bulk gold. In order to realize plasmonic resonators made of nanoporous gold, we develop a nanofabrication method based on polymeric templates for metal deposition and we obtain antenna arrays resonating at mid-infrared wavelengths selected by design. We then coat the antennas with a thin (3 nm) silica layer acting as the target dielectric layer for optical energy transfer. We study the strength of the light-matter coupling at the vibrational absorption frequency of silica at 1240 cm(-1) through the analysis of the experimental Fano lineshape that is benchmarked against identical structures made of bulk gold. The boost in the optical energy transfer from free-space mid-infrared radiation to molecular vibrations in nanoporous 3D nanoantenna arrays can open new application routes for plasmon-enhanced physical-chemical reactions.

  18. Nanoporous Carbon Nitride: A High Efficient Filter for Seawater Desalination

    CERN Document Server

    Li, Weifeng; Zhou, Hongcai; Zhang, Xiaoming; Zhao, Mingwen

    2015-01-01

    The low efficiency of commercially-used reverse osmosis (RO) membranes has been the main obstacle in seawater desalination application. Here, we report the auspicious performance, through molecular dynamics simulations, of a seawater desalination filter based on the recently-synthesized graphene-like carbon nitride (g-C2N) [Nat. Commun., 2015, 6, 6486]. Taking advantage of the inherent nanopores and excellent mechanical properties of g-C2N filter, highly efficient seawater desalination can be achieved by modulating the nanopores under tensile strain. The water permeability can be improved by two orders of magnitude compared to RO membranes, which offers a promising approach to the global water shortage solution.

  19. Nanoporous surfaces via impact of molten metallic droplets

    Energy Technology Data Exchange (ETDEWEB)

    Qu, Meng [Massachusetts Institute of Technology, Department of Materials Science and Engineering, Cambridge, MA (United States); Colmenares, Jose R.; Valarezo, Alfredo [State University of New York, Stony Brook (United States). Center for Thermal Spray Research; Gouldstone, Andrew [Northeastern University, Department of Mechanical and Industrial Engineering, Boston, MA (United States)

    2009-08-15

    Here we describe a new pathway for the production of nanoporous surfaces, by recourse to molten droplet impact and solidification. The nanopores in this case are frozen in bubbles that nucleate in the melt due to gas supersaturation within 100 nanoseconds of impact. Initial observations and previous analysis are presented, as well as ongoing work to control or pattern porosity via process variation and substrate pre-treatment. This method is presumably not limited in material, and has potential to create large area, functional surfaces. (orig.)

  20. Raman fingerprinting of single dielectric nanoparticles in plasmonic nanopores

    Science.gov (United States)

    Kerman, Sarp; Chen, Chang; Li, Yi; van Roy, Wim; Lagae, Liesbet; van Dorpe, Pol

    2015-11-01

    Plasmonic nano-apertures are commonly used for the detection of small particles such as nanoparticles and proteins by exploiting electrical and optical techniques. Plasmonic nanopores are metallic nano-apertures sitting on a thin membrane with a tiny hole. It has been shown that plasmonic nanopores with a given geometry identify internal molecules using Surface Enhanced Raman Spectroscopy (SERS). However, label-free identification of a single dielectric nanoparticle requires a highly localized field comparable to the size of the particle. Additionally, the particle's Brownian motion can jeopardize the amount of photons collected from a single particle. Here, we demonstrate that the combination of optical trapping and SERS can be used for the detection and identification of 20 nm polystyrene nanoparticles in plasmonic nanopores. This work is anticipated to contribute to the detection of small bioparticles, optical trapping and nanotribology studies.Plasmonic nano-apertures are commonly used for the detection of small particles such as nanoparticles and proteins by exploiting electrical and optical techniques. Plasmonic nanopores are metallic nano-apertures sitting on a thin membrane with a tiny hole. It has been shown that plasmonic nanopores with a given geometry identify internal molecules using Surface Enhanced Raman Spectroscopy (SERS). However, label-free identification of a single dielectric nanoparticle requires a highly localized field comparable to the size of the particle. Additionally, the particle's Brownian motion can jeopardize the amount of photons collected from a single particle. Here, we demonstrate that the combination of optical trapping and SERS can be used for the detection and identification of 20 nm polystyrene nanoparticles in plasmonic nanopores. This work is anticipated to contribute to the detection of small bioparticles, optical trapping and nanotribology studies. Electronic supplementary information (ESI) available: Fig. S1: The

  1. Direct laser writing for nanoporous liquid core laser sensors

    DEFF Research Database (Denmark)

    Grossmann, Tobias; Christiansen, Mads Brøkner; Peterson, Jeffrey

    2012-01-01

    We report the fabrication of nanoporous liquid core lasers via direct laser writing based on two-photon absorption in combination with thiolene-chemistry. As gain medium Rhodamine 6G was embedded in the nanoporous polybutadiene matrix. The lasing devices with thresholds of 19 µJ/mm2 were measured...... to have bulk refractive index sensitivities of 169 nm/RIU at a laser wavelength of 600 nm, demonstrating strongly increased overlap of the modes with the analyte in comparison to solid state evanescent wave sensors....

  2. Multilayered semiconductor membranes for nanopore ionic conductance modulation.

    Science.gov (United States)

    Gracheva, Maria E; Melnikov, Dmitriy V; Leburton, Jean-Pierre

    2008-11-25

    We explore the possibility of using thin layered semiconductor membranes for electrical control of the ion current flow through a nanopore, thereby operating like tunable ionic transistors. While single layer semiconductor membranes can be voltage tuned to operate as ionic filters or "switches", double layered membranes can rectify the ion current flowing through the nanopore in addition to ion filtering. Triple layer membranes exhibit enhanced functionality with characteristics similar to those of the single and double layer membranes in addition to bidirectional current blocking and switching, thereby operating similar to tunable ionic transistors.

  3. Mechanisms of UV-induced signal transduction

    Energy Technology Data Exchange (ETDEWEB)

    Kulms, D.; Schwarz, T. [Univ. Muenster, Muenster (Germany). Ludwing Boltzmann Inst. for Cell Biology and Immunobiology of the Skin

    2002-04-01

    Ultraviolet radiation (UV) causes a variety of biological effects that can be either beneficial or harmful for human health. To exert these effects on a cellular basis, UV uses a variety of signaling pathways. DNA is the major chromophore for UVB. Thus, nuclear DNA damage has been detected to be a major mediator of numerous UVB effects, and experimental reduction of DNA damage is associated with a loss of these effects. On the other hand, UV has been found to utilize molecular components within the cytoplasm or at the cell membrane for signaling. UV can directly activate cell surface receptors, kinases, and transcription factors. The nuclear and extranuclear signaling pathways are generated independently and have been recently recognized to be not mutually exclusive but to contribute to various UV effects in an independent and additive way. Further knowledge of how these signaling pathways relate to each other will certainly increase our understanding of how UV acts as a pathogen. The following review will briefly discuss current aspects of the mechanisms involved in UV-induced signal transduction. (author)

  4. Glycosphingolipid–Protein Interaction in Signal Transduction

    Directory of Open Access Journals (Sweden)

    Domenico Russo

    2016-10-01

    Full Text Available Glycosphingolipids (GSLs are a class of ceramide-based glycolipids essential for embryo development in mammals. The synthesis of specific GSLs depends on the expression of distinctive sets of GSL synthesizing enzymes that is tightly regulated during development. Several reports have described how cell surface receptors can be kept in a resting state or activate alternative signalling events as a consequence of their interaction with GSLs. Specific GSLs, indeed, interface with specific protein domains that are found in signalling molecules and which act as GSL sensors to modify signalling responses. The regulation exerted by GSLs on signal transduction is orthogonal to the ligand–receptor axis, as it usually does not directly interfere with the ligand binding to receptors. Due to their properties of adjustable production and orthogonal action on receptors, GSLs add a new dimension to the control of the signalling in development. GSLs can, indeed, dynamically influence progenitor cell response to morphogenetic stimuli, resulting in alternative differentiation fates. Here, we review the available literature on GSL–protein interactions and their effects on cell signalling and development.

  5. Glycosphingolipid–Protein Interaction in Signal Transduction

    Science.gov (United States)

    Russo, Domenico; Parashuraman, Seetharaman; D’Angelo, Giovanni

    2016-01-01

    Glycosphingolipids (GSLs) are a class of ceramide-based glycolipids essential for embryo development in mammals. The synthesis of specific GSLs depends on the expression of distinctive sets of GSL synthesizing enzymes that is tightly regulated during development. Several reports have described how cell surface receptors can be kept in a resting state or activate alternative signalling events as a consequence of their interaction with GSLs. Specific GSLs, indeed, interface with specific protein domains that are found in signalling molecules and which act as GSL sensors to modify signalling responses. The regulation exerted by GSLs on signal transduction is orthogonal to the ligand–receptor axis, as it usually does not directly interfere with the ligand binding to receptors. Due to their properties of adjustable production and orthogonal action on receptors, GSLs add a new dimension to the control of the signalling in development. GSLs can, indeed, dynamically influence progenitor cell response to morphogenetic stimuli, resulting in alternative differentiation fates. Here, we review the available literature on GSL–protein interactions and their effects on cell signalling and development. PMID:27754465

  6. Analysis of electrolyte transport through charged nanopores

    Science.gov (United States)

    Peters, P. B.; van Roij, R.; Bazant, M. Z.; Biesheuvel, P. M.

    2016-05-01

    We revisit the classical problem of flow of electrolyte solutions through charged capillary nanopores or nanotubes as described by the capillary pore model (also called "space charge" theory). This theory assumes very long and thin pores and uses a one-dimensional flux-force formalism which relates fluxes (electrical current, salt flux, and fluid velocity) and driving forces (difference in electric potential, salt concentration, and pressure). We analyze the general case with overlapping electric double layers in the pore and a nonzero axial salt concentration gradient. The 3 ×3 matrix relating these quantities exhibits Onsager symmetry and we report a significant new simplification for the diagonal element relating axial salt flux to the gradient in chemical potential. We prove that Onsager symmetry is preserved under changes of variables, which we illustrate by transformation to a different flux-force matrix given by Gross and Osterle [J. Chem. Phys. 49, 228 (1968), 10.1063/1.1669814]. The capillary pore model is well suited to describe the nonlinear response of charged membranes or nanofluidic devices for electrokinetic energy conversion and water desalination, as long as the transverse ion profiles remain in local quasiequilibrium. As an example, we evaluate electrical power production from a salt concentration difference by reverse electrodialysis, using an efficiency versus power diagram. We show that since the capillary pore model allows for axial gradients in salt concentration, partial loops in current, salt flux, or fluid flow can develop in the pore. Predictions for macroscopic transport properties using a reduced model, where the potential and concentration are assumed to be invariant with radial coordinate ("uniform potential" or "fine capillary pore" model), are close to results of the full model.

  7. Nanoporous metal oxides with tunable and nanocrystalline frameworks via conversion of metal-organic frameworks.

    Science.gov (United States)

    Kim, Tae Kyung; Lee, Kyung Joo; Cheon, Jae Yeong; Lee, Jae Hwa; Joo, Sang Hoon; Moon, Hoi Ri

    2013-06-19

    Nanoporous metal oxide materials are ubiquitous in the material sciences because of their numerous potential applications in various areas, including adsorption, catalysis, energy conversion and storage, optoelectronics, and drug delivery. While synthetic strategies for the preparation of siliceous nanoporous materials are well-established, nonsiliceous metal oxide-based nanoporous materials still present challenges. Herein, we report a novel synthetic strategy that exploits a metal-organic framework (MOF)-driven, self-templated route toward nanoporous metal oxides via thermolysis under inert atmosphere. In this approach, an aliphatic ligand-based MOF is thermally converted to nanoporous metal oxides with highly nanocrystalline frameworks, in which aliphatic ligands act as the self-templates that are afterward evaporated to generate nanopores. We demonstrate this concept with hierarchically nanoporous magnesia (MgO) and ceria (CeO2), which have potential applicability for adsorption, catalysis, and energy storage. The pore size of these nanoporous metal oxides can be readily tuned by simple control of experimental parameters. Significantly, nanoporous MgO exhibits exceptional CO2 adsorption capacity (9.2 wt %) under conditions mimicking flue gas. This MOF-driven strategy can be expanded to other nanoporous monometallic and multimetallic oxides with a multitude of potential applications.

  8. Multichannel detection of ionic currents through two nanopores fabricated on integrated Si3N4 membranes.

    Science.gov (United States)

    Yanagi, Itaru; Akahori, Rena; Aoki, Mayu; Harada, Kunio; Takeda, Ken-Ichi

    2016-08-16

    Integration of solid-state nanopores and multichannel detection of signals from each nanopore are effective measures for realizing high-throughput nanopore sensors. In the present study, we demonstrated fabrication of Si3N4 membrane arrays and the simultaneous measurement of ionic currents through two nanopores formed in two adjacent membranes. Membranes with thicknesses as low as 6.4 nm and small nanopores with diameters of less than 2 nm could be fabricated using the poly-Si sacrificial-layer process and multilevel pulse-voltage injection. Using the fabricated nanopore membranes, we successfully achieved simultaneous detection of clear ionic-current blockades when single-stranded short homopolymers (poly(dA)60) passed through two nanopores. In addition, we investigated the signal crosstalk and leakage current among separated chambers. When two nanopores were isolated on the front surface of the membrane, there was no signal crosstalk or leakage current between the chambers. However, when two nanopores were isolated on the backside of the Si substrate, signal crosstalk and leakage current were observed owing to high-capacitance coupling between the chambers and electrolysis of water on the surface of the Si substrate. The signal crosstalk and leakage current could be suppressed by oxidizing the exposed Si surface in the membrane chip. Finally, the observed ionic-current blockade when poly(dA)60 passed through the nanopore in the oxidized chip was approximately half of that observed in the non-oxidized chip.

  9. Nanoporous AAO: A platform for regular heterogeneous nanostructures and energy storage devices

    Science.gov (United States)

    Perez, Israel

    Nanoporous anodic aluminum oxide (AAO) has vast implications as a tool for nanoscience research and as a nanostructure in which nanoscale devices can be fabricated because of its regular and ordered nanopores. Self-assembly plays a critical role in pore ordering, causing nanopores to grow parallel with one another in high density. The mild electrochemical conditions in which porous AAO grows along with its relatively cheap starting materials makes this nanomaterial a cost effective alternative to advanced photolithography techniques for forming high surface area nanostructures over large areas. In this research, atomic layer deposition (ALD) was used to deposit conformal films within in nanoporous AAO with hopes to (1) develop methodologies to characterize ALD depositions within its high aspect ratio nanopores and (2) to better understand how to use nanoporous AAO templates as a scaffold for energy devices, specifically Metal-Insulator-Metal (MIM) capacitors. Using the nanotube template synthesis method, ALD films were deposited onto nanoporous AAO, later removing the films deposited within the templates nanopores for characterization in TEM. This nanotube metrology characterization involves first obtaining images of full length ALD-AAO nanotubes, and then measuring wall thickness as a function of depth within the nanopore. MIM nanocapacitors were also constructed in vertical AAO nanopores by deposition of multilayer ALD films. MIM stacks were patterned into micro-scale capacitors for electrical characterization.

  10. The sensory transduction pathways in bacterial chemotaxis

    Science.gov (United States)

    Taylor, Barry L.

    1989-01-01

    Bacterial chemotaxis is a useful model for investigating in molecular detail the behavioral response of cells to changes in their environment. Peritrichously flagellated bacteria such as coli and typhimurium swim by rotating helical flagella in a counterclockwise direction. If flagellar rotation is briefly reversed, the bacteria tumble and change the direction of swimming. The bacteria continuously sample the environment and use a temporal sensing mechanism to compare the present and immediate past environments. Bacteria respond to a broad range of stimuli including changes in temperature, oxygen concentration, pH and osmotic strength. Bacteria are attracted to potential sources of nutrition such as sugars and amino acids and are repelled by other chemicals. In the methylation-dependent pathways for sensory transduction and adaptation in E. coli and S. typhimurium, chemoeffectors bind to transducing proteins that span the plasma membrane. The transducing proteins are postulated to control the rate of autophosphorylation of the CheA protein, which in turn phosphorylates the CheY protein. The phospho-CheY protein binds to the switch on the flagellar motor and is the signal for clockwise rotation of the motor. Adaptation to an attractant is achieved by increasing methylation of the transducing protein until the attractant stimulus is cancelled. Responses to oxygen and certain sugars involve methylation-independent pathways in which adaption occurs without methylation of a transducing protein. Taxis toward oxygen is mediated by the electron transport system and changes in the proton motive force. Recent studies have shown that the methylation-independent pathway converges with the methylation-dependent pathway at or before the CheA protein.

  11. The transduction properties of intercostal muscle mechanoreceptors

    Directory of Open Access Journals (Sweden)

    Johnson Richard D

    2002-10-01

    Full Text Available Abstract Background Intercostal muscles are richly innervated by mechanoreceptors. In vivo studies of cat intercostal muscle have shown that there are 3 populations of intercostal muscle mechanoreceptors: primary muscle spindles (1°, secondary muscle spindles (2° and Golgi tendon organs (GTO. The purpose of this study was to determine the mechanical transduction properties of intercostal muscle mechanoreceptors in response to controlled length and velocity displacements of the intercostal space. Mechanoreceptors, recorded from dorsal root fibers, were localized within an isolated intercostal muscle space (ICS. Changes in ICS displacement and the velocity of ICS displacement were independently controlled with an electromagnetic motor. ICS velocity (0.5 – 100 μm/msec to a displacement of 2,000 μm and displacement (50–2,000 μm at a constant velocity of 10 μm/msec parameters encompassed the full range of rib motion. Results Both 1° and 2° muscle spindles were found evenly distributed within the ICS. GTOs were localized along the rib borders. The 1° spindles had the greatest discharge frequency in response to displacement amplitude followed by the 2° afferents and GTOs. The 1° muscle spindles also possessed the greatest discharge frequency in response to graded velocity changes, 3.0 spikes·sec-1/μm·msec-1. GTOs had a velocity response of 2.4 spikes·sec-1/μm·msec-1 followed by 2° muscle spindles at 0.6 spikes·sec-1/μm·msec-1. Conclusion The results of this study provide a systematic description of the mechanosenitivity of the 3 types of intercostal muscle mechanoreceptors. These mechanoreceptors have discharge properties that transduce the magnitude and velocity of intercostal muscle length.

  12. Engineering a nanopore with co-chaperonin function

    NARCIS (Netherlands)

    Ho, Ching-Wen; Meervelt, Veerle; Tsai, Keng-Chang; De Temmerman, Pieter-Jan; Mast, Jan; Maglia, Giovanni

    2015-01-01

    The emergence of an enzymatic function can reveal functional insights and allows the engineering of biological systems with enhanced properties. We engineered an alpha hemolysin nanopore to function as GroES, a protein that, in complex with GroEL, forms a two-stroke protein-folding nanomachine. The

  13. Electrochromic artificial muscles based on nanoporous metal-polymer composites

    NARCIS (Netherlands)

    Detsi, E.; Onck, P. R.; De Hosson, J. T. M.

    2013-01-01

    This work shows that a nano-coating of electrochromic polymer grown onto the ligaments of nanoporous gold causes reversible dimensional and color changes during electrochemical actuation. This combination of electromechanical and optical properties opens additional avenues for the applications of

  14. Anisotropic diffusion of water molecules in hydroxyapatite nanopores

    Science.gov (United States)

    Prakash, Muthuramalingam; Lemaire, Thibault; Caruel, Matthieu; Lewerenz, Marius; de Leeuw, Nora H.; Di Tommaso, Devis; Naili, Salah

    2017-07-01

    New insights into the dynamical properties of water in hydroxyapatite (HAP) nanopores, a model system for the fluid flow within nanosize spaces inside the collagen-apatite structure of bone, were obtained from molecular dynamics simulations of liquid water confined between two parallel HAP surfaces of different sizes (20 Å ≤ H ≤ 240 Å). Calculations were conducted using a core-shell interatomic potential for HAP together with the extended simple point charge model for water. This force field gives an activation energy for water diffusion within HAP nanopores that is in excellent agreement with available experimental data. The dynamical properties of water within the HAP nanopores were quantified in terms of the second-order water diffusion tensor. Results indicate that water diffuses anisotropically within the HAP nanopores, with the solvent molecules moving parallel to the surface twice as fast as the perpendicular direction. This unusual dynamic behaviour is linked to the strong polarizing effect of calcium ions, and the synergic interactions between the water molecules in the first hydration layer of HAP with the calcium, hydroxyl, and phosphate ions, which facilitates the flow of water molecules in the directions parallel to the HAP surface.

  15. High-density nanopore array for selective biomolecule transport.

    Energy Technology Data Exchange (ETDEWEB)

    Patel, Kamlesh D.

    2011-11-01

    Development of sophisticated tools capable of manipulating molecules at their own length scale enables new methods for chemical synthesis and detection. Although nanoscale devices have been developed to perform individual tasks, little work has been done on developing a truly scalable platform: a system that combines multiple components for sequential processing, as well as simultaneously processing and identifying the millions of potential species that may be present in a biological sample. The development of a scalable micro-nanofluidic device is limited in part by the ability to combine different materials (polymers, metals, semiconductors) onto a single chip, and the challenges with locally controlling the chemical, electrical, and mechanical properties within a micro or nanochannel. We have developed a unique construct known as a molecular gate: a multilayered polymer based device that combines microscale fluid channels with nanofluidic interconnects. Molecular gates have been demonstrated to selectively transport molecules between channels based on size or charge. In order to fully utilize these structures, we need to develop methods to actively control transport and identify species inside a nanopore. While previous work has been limited to creating electrical connections off-channel or metallizing the entire nanopore wall, we now have the ability to create multiple, separate conductive connections at the interior surface of a nanopore. These interior electrodes will be used for direct sensing of biological molecules, probing the electrical potential and charge distribution at the surface, and to actively turn on and off electrically driven transport of molecules through nanopores.

  16. Onsager coefficients for binary mixture diffusion in nanopores

    NARCIS (Netherlands)

    Krishna, R.; van Baten, J.M.

    2008-01-01

    This paper presents a critical appraisal of current estimation methods for the Onsager coefficients L-11, L-22, and L-12 for binary mixture diffusion inside nanopores using pure component diffusivity data inputs. The appraisal is based on extensive sets of molecular dynamics (MD) simulation data on

  17. Nanopore sensing of individual transcription factors bound to DNA

    Science.gov (United States)

    Squires, Allison; Atas, Evrim; Meller, Amit

    2015-06-01

    Transcription factor (TF)-DNA interactions are the primary control point in regulation of gene expression. Characterization of these interactions is essential for understanding genetic regulation of biological systems and developing novel therapies to treat cellular malfunctions. Solid-state nanopores are a highly versatile class of single-molecule sensors that can provide rich information about local properties of long charged biopolymers using the current blockage patterns generated during analyte translocation, and provide a novel platform for characterization of TF-DNA interactions. The DNA-binding domain of the TF Early Growth Response Protein 1 (EGR1), a prototypical zinc finger protein known as zif268, is used as a model system for this study. zif268 adopts two distinct bound conformations corresponding to specific and nonspecific binding, according to the local DNA sequence. Here we implement a solid-state nanopore platform for direct, label- and tether-free single-molecule detection of zif268 bound to DNA. We demonstrate detection of single zif268 TFs bound to DNA according to current blockage sublevels and duration of translocation through the nanopore. We further show that the nanopore can detect and discriminate both specific and nonspecific binding conformations of zif268 on DNA via the distinct current blockage patterns corresponding to each of these two known binding modes.

  18. Evaporation-driven nanomachining to fabricate nanopores in $SIO_2$

    NARCIS (Netherlands)

    Vreede, de L.J.; Berg, van den A.; Eijkel, J.C.T.

    2014-01-01

    We demonstrate a novel method to produce high aspect ratio nanopores in fused silica (SiO2) using basic cleanroom techniques and high temperature. We found that gold nanoparticles on silicon oxide (SiO2) move perpendicularly to the surface into the substrate when heated at 1050C, creating cylindric

  19. Preparation and Photocatalytic Characterization of Nanoporous TiO2

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Nanoporous TiO2 photocatalysts were prepared by use of controlled drying method with surfactants. The surface area and porous properties are dependent on the chain length of incorporated surfactant cation. The TiO2 materials prepared in the presence of surfactant molecules during the gel formation exhibit much higher photocatalytic activity than that prepared in the absence of surfactants.

  20. Liquid Core Waveguides by UV Modification of Nanoporous Polymer

    DEFF Research Database (Denmark)

    Christiansen, Mads Brøkner; Gopalakrishnan, Nimi; Sagar, Kaushal Shashikant

    2011-01-01

    Liquid core waveguides are fabricated from a self-assembled nanoporous polymer, with a porosity of 40%. The high porosity results in an effective refractive index of 1.26 for visible light, i.e. below the refractive index of aqueous solutions. However, since the polymer is hydrophobic, fluids...

  1. Template Transfer Nanoimprint for Uniform Nanopores and Nanopoles

    Directory of Open Access Journals (Sweden)

    Jianjun Li

    2016-01-01

    Full Text Available A new methodology is developed for the fabrication of nanostructures on substrate based on anodized Al2O3 (AAO porous template transfer process. It includes (1 forming amorphous alloy, negative UV-resist resin (i.e., SU-8, or PMMA (polymethylmethacrylate plate nanorod arrays by hot-press molding amorphous alloy, negative UV-resist resin (i.e., SU-8, or PMMA plate into the anodized Al2O3 porous substrates; (2 removing AAO templates by chemical etching process after suitable posttreatment (annealing and/or irradiation to improve the mechanical strength of the nanorod arrays; (3 reforming nanopore films by hot-embossing the nanorod arrays into a thin layer of polymer film on substrates (e.g., silica; (4 cleaning the bottom residues in pores of the films by oxygen plasmon. The results indicate that the diameters of amorphous alloy (or negative UV-resist resin or PMMA nanorod arrays can be ranged from 32 nm to 200 nm. The diameters of the imprinted ILR-1050 photoresist nanopores are about 94.5 ± 12.2 nm and the diameters of the imprinted or SU-8 resin on glass slides nanopores are about 207 ± 26.4 nm, which inherit the diameters of AAO templates. This methodology provides a general method to fabricate nanorods arrays and/or thin nanopore films by template transfer nanoimprint process.

  2. Nanofluidic control by nanoporous materials using electrocapillary effects

    Science.gov (United States)

    Xue, Yahui; Duan, Huiling; Markmann, Juergen; Huber, Patrick; Weissmueller, Joerg

    2014-11-01

    Electrocapillary techniques exhibit great advantages in nonmechanical electrofluidic manipulation, e.g., flow actuation in micro-/nano-channels. One issue of interest is the spontaneous imbibition of fluids in bodies with a nanoscale pores size. Contrary to previous studies we here use a metallic nanoporous body. This allows us to control the electrode potential at the solid-fluid interface. Nanoporous gold (NPG) with uniform pore- and ligament size of 45 nm was fabricated by dealloying an Ag75Au25 alloy. Spontaneous imbibition of aqueous electrolytes obeys the Lucas-Washburn law. Interestingly, the estimated tortuosity has the low value of 3.2 (3 is expected for an isotropic sponge). Electrocapillary effects were then used to manipulate the imbibition dynamics. As a result of the enhanced wetting by the electrocapillary effects, we observed an acceleration of the imbibition by 30%. When air as the pore fluid is replaced with cyclohexane, we show for aqueous electrolyte imbibition in nanoporous gold that the fluid flow can be reversibly switched on and off through electric potential control of the solid-liquid interfacial tension. Our findings demonstrate that the high electric conductivity along with the pathways for fluid/ionic transport render nanoporous gold a versatile, accurately controllable electrocapillary pump and flow sensor for minute amounts of liquids with exceptionally low operating voltages.

  3. A Comprehensive Numerical Model for Simulating Fluid Transport in Nanopores

    Science.gov (United States)

    Zhang, Yuan; Yu, Wei; Sepehrnoori, Kamy; di, Yuan

    2017-01-01

    Since a large amount of nanopores exist in tight oil reservoirs, fluid transport in nanopores is complex due to large capillary pressure. Recent studies only focus on the effect of nanopore confinement on single-well performance with simple planar fractures in tight oil reservoirs. Its impacts on multi-well performance with complex fracture geometries have not been reported. In this study, a numerical model was developed to investigate the effect of confined phase behavior on cumulative oil and gas production of four horizontal wells with different fracture geometries. Its pore sizes were divided into five regions based on nanopore size distribution. Then, fluid properties were evaluated under different levels of capillary pressure using Peng-Robinson equation of state. Afterwards, an efficient approach of Embedded Discrete Fracture Model (EDFM) was applied to explicitly model hydraulic and natural fractures in the reservoirs. Finally, three fracture geometries, i.e. non-planar hydraulic fractures, non-planar hydraulic fractures with one set natural fractures, and non-planar hydraulic fractures with two sets natural fractures, are evaluated. The multi-well performance with confined phase behavior is analyzed with permeabilities of 0.01 md and 0.1 md. This work improves the analysis of capillarity effect on multi-well performance with complex fracture geometries in tight oil reservoirs.

  4. Nanopore fabrication by heating au particles on ceramic substrates

    NARCIS (Netherlands)

    de Vreede, Lennart; van den Berg, Albert; Eijkel, Jan C.T.

    2015-01-01

    We found that gold nanoparticles, when heated to close to their melting point on substrates of amorphous SiO2 or amorphous Si3N4, move perpendicularly into the substrate. Dependent on applied temperatures, particles can become buried or leave nanopores of extreme aspect ratio (diameter congruent to

  5. Chemically modified solid state nanopores for high throughput nanoparticle separation

    Energy Technology Data Exchange (ETDEWEB)

    Prabhu, Anmiv S; Kim, Min Jun [School of Biomedical Engineering and Health Science, Drexel University, Philadelphia, PA 19104 (United States); Jubery, Talukder Zaki N; Dutta, Prashanta [School of Mechanical and Materials Engineering, Washington State University, Pullman, WA 99164 (United States); Freedman, Kevin J; Mulero, Rafael, E-mail: mkim@coe.drexel.ed [Department of Mechanical Engineering and Mechanics, Drexel University, Philadelphia, PA 19104 (United States)

    2010-11-17

    The separation of biomolecules and other nanoparticles is a vital step in several analytical and diagnostic techniques. Towards this end we present a solid state nanopore-based set-up as an efficient separation platform. The translocation of charged particles through a nanopore was first modeled mathematically using the multi-ion model and the surface charge density of the nanopore membrane was identified as a critical parameter that determines the selectivity of the membrane and the throughput of the separation process. Drawing from these simulations a single 150 nm pore was fabricated in a 50 nm thick free-standing silicon nitride membrane by focused-ion-beam milling and was chemically modified with (3-aminopropyl)triethoxysilane to change its surface charge density. This chemically modified membrane was then used to separate 22 and 58 nm polystyrene nanoparticles in solution. Once optimized, this approach can readily be scaled up to nanopore arrays which would function as a key component of next-generation nanosieving systems.

  6. Development of nanoporous gold electrodes for electrochemical applications

    DEFF Research Database (Denmark)

    Quan, Xueling; Fischer, Lee MacKenzie; Boisen, Anja

    2011-01-01

    In this work we have used simple microfabrication techniques and chemical de-alloying of co-sputtered AgAu alloys to create nanoporous gold (np-Au) electrodes. The physical properties of the np-Au electrodes were investigated using scanning electron microscopy with energy dispersive X-ray analysi...

  7. Nanopore Sequencing as a Rapidly Deployable Ebola Outbreak Tool.

    Science.gov (United States)

    Hoenen, Thomas; Groseth, Allison; Rosenke, Kyle; Fischer, Robert J; Hoenen, Andreas; Judson, Seth D; Martellaro, Cynthia; Falzarano, Darryl; Marzi, Andrea; Squires, R Burke; Wollenberg, Kurt R; de Wit, Emmie; Prescott, Joseph; Safronetz, David; van Doremalen, Neeltje; Bushmaker, Trenton; Feldmann, Friederike; McNally, Kristin; Bolay, Fatorma K; Fields, Barry; Sealy, Tara; Rayfield, Mark; Nichol, Stuart T; Zoon, Kathryn C; Massaquoi, Moses; Munster, Vincent J; Feldmann, Heinz

    2016-02-01

    Rapid sequencing of RNA/DNA from pathogen samples obtained during disease outbreaks provides critical scientific and public health information. However, challenges exist for exporting samples to laboratories or establishing conventional sequencers in remote outbreak regions. We successfully used a novel, pocket-sized nanopore sequencer at a field diagnostic laboratory in Liberia during the current Ebola virus outbreak.

  8. Water and Ion Permeation through Electrically Charged Nanopore

    Institute of Scientific and Technical Information of China (English)

    ZENG Li; ZUO Guang-Hong; GONG Xiao-Jing; LU Hang-Jun; WANG Chun-Lei; WU Ke-Fei; WAN Rong-Zheng

    2008-01-01

    @@ The behaviour of water and small solutes in confined geometries is important to a variety of chemical and nanofluidic applications. Here we investigate the permeation and distribution of water and ions in electrically charged carbon cylindrical nanopore during the osmotic process using molecular dynamics simulations. In the simulations, charges are distributed uniformly on the pores with diameter of 0.9 nm. For nanopores with no charge or a low charge, ions are difficult to enter. With the increasing of charge densities on the pores, ions will appear inside the nanopores because of the large electronic forces between the ions and the charged pores. Different ion entries induce varying effects on osmotic water flow. Our simulations reveal that the osmotic water can flow through the negatively charged pore occupied by K+ ions, while water flux through the positively charged pores will be disrupted by Cl- ions inside the pores. This may be explained by the different radial distributions of K+ions and Cl- ions inside the charged nanopores.

  9. Electrochromic artificial muscles based on nanoporous metal-polymer composites

    NARCIS (Netherlands)

    Detsi, E.; Onck, P. R.; De Hosson, J. T. M.

    2013-01-01

    This work shows that a nano-coating of electrochromic polymer grown onto the ligaments of nanoporous gold causes reversible dimensional and color changes during electrochemical actuation. This combination of electromechanical and optical properties opens additional avenues for the applications of ar

  10. Improved oil recovery in nanopores: NanoIOR

    Science.gov (United States)

    de Almeida, James Moraes; Miranda, Caetano Rodrigues

    2016-06-01

    Fluid flow through minerals pores occurs in underground aquifers, oil and shale gas reservoirs. In this work, we explore water and oil flow through silica nanopores. Our objective is to model the displacement of water and oil through a nanopore to mimic the fluid infiltration on geological nanoporous media and the displacement of oil with and without previous contact with water by water flooding to emulate an improved oil recovery process at nanoscale (NanoIOR). We have observed a barrier-less infiltration of water and oil on the empty (vacuum) simulated 4 nm diameter nanopores. For the water displacement with oil, we have obtained a critical pressure of 600 atm for the oil infiltration, and after the flow was steady, a water layer was still adsorbed to the surface, thus, hindering the direct contact of the oil with the surface. In addition, oil displacement with water was assessed, with and without an adsorbed water layer (AWL). Without the AWL, the pressure needed for oil infiltration was 5000 atm, whereas, with the AWL the infiltration was observed for pressures as low as 10 atm. Hence, the infiltration is greatly affected by the AWL, significantly lowering the critical pressure for oil displacement.

  11. Nanoporous gold formation by dealloying : A Metropolis Monte Carlo study

    NARCIS (Netherlands)

    Zinchenko, O.; De Raedt, H. A.; Detsi, E.; Onck, P. R.; De Hosson, J. T. M.

    2013-01-01

    A Metropolis Monte Carlo study of the dealloying mechanism leading to the formation of nanoporous gold is presented. A simple lattice-gas model for gold, silver and acid particles, vacancies and products of chemical reactions is adopted. The influence of temperature, concentration and lattice defect

  12. From Block Copolymers to Nano-porous Materials

    DEFF Research Database (Denmark)

    Vigild, Martin Etchells; Ndoni, Sokol; Berg, Rolf Henrik

    2003-01-01

    Quantitative etching of the polydimethylsiloxane block in a series of polystyrene-polydimethylsiloxane (PS-PDMS) block copolymers is reported. Reacting the block copolymer with anhydrous hydrogen fluoride (HF) renders a nanoporous material with the remaining PS maintaining the original morphology...

  13. Open nanoporous morphologies from polymeric blends by carbon dioxide foaming

    NARCIS (Netherlands)

    Krause, B.; Diekmann, K.; van der Vegt, N.F.A.; Wessling, Matthias

    2002-01-01

    We report the formation of open nanoporous polymer films composed of homogeneous polysulfone/polyimide blends. Porosity is introduced by expansion of carbon dioxide-saturated films at elevated temperatures. To interpret details of the porous morphologies in terms of the experimental conditions

  14. Performance improvement of silicon solar cells by nanoporous silicon coating

    Directory of Open Access Journals (Sweden)

    Dzhafarov T. D.

    2012-04-01

    Full Text Available In the present paper the method is shown to improve the photovoltaic parameters of screen-printed silicon solar cells by nanoporous silicon film formation on the frontal surface of the cell using the electrochemical etching. The possible mechanisms responsible for observed improvement of silicon solar cell performance are discussed.

  15. Physisorption of SDS in a Hydrocarbon Nanoporous Polymer

    DEFF Research Database (Denmark)

    Li, Li; Wang, Yanwei; Vigild, Martin Etchells

    2010-01-01

    as diffusion-controlled dynamics. Both the specific equilibrium loading and the final SDS adsorption reached plateau values at concentrations above 6.8 m M. The infiltration of SDS into the nanoporous film was mainly followed by gravimetry and for a few samples confirmed by X-ray photoelectron spectroscopy...

  16. Wafer-scale nanostructure formation inside vertical nano-pores

    NARCIS (Netherlands)

    Berenschot, Johan W.; Sun, Xingwu; Le The, Hai; Tiggelaar, Roald M.; de Boer, Meint J.; Eijkel, Jan C.T.; Gardeniers, Johannes G.E.; Tas, Niels Roelof; Sarajlic, Edin

    We propose a wafer-scale technique for nanostructure formation inside vertically oriented, through-membrane nano-pores. It uses 50 nm monocrystalline silicon pillars as a mold, embedded in a silicon nitride membrane formed in an innovative step. The proposed technique paves the way towards advanced

  17. Decoding long nanopore sequencing reads of natural DNA.

    Science.gov (United States)

    Laszlo, Andrew H; Derrington, Ian M; Ross, Brian C; Brinkerhoff, Henry; Adey, Andrew; Nova, Ian C; Craig, Jonathan M; Langford, Kyle W; Samson, Jenny Mae; Daza, Riza; Doering, Kenji; Shendure, Jay; Gundlach, Jens H

    2014-08-01

    Nanopore sequencing of DNA is a single-molecule technique that may achieve long reads, low cost and high speed with minimal sample preparation and instrumentation. Here, we build on recent progress with respect to nanopore resolution and DNA control to interpret the procession of ion current levels observed during the translocation of DNA through the pore MspA. As approximately four nucleotides affect the ion current of each level, we measured the ion current corresponding to all 256 four-nucleotide combinations (quadromers). This quadromer map is highly predictive of ion current levels of previously unmeasured sequences derived from the bacteriophage phi X 174 genome. Furthermore, we show nanopore sequencing reads of phi X 174 up to 4,500 bases in length, which can be unambiguously aligned to the phi X 174 reference genome, and demonstrate proof-of-concept utility with respect to hybrid genome assembly and polymorphism detection. This work provides a foundation for nanopore sequencing of long, natural DNA strands.

  18. Concentration Polarization in Translocation of DNA through Nanopores and Nanochannels

    NARCIS (Netherlands)

    Das, Siddhartha; Dubsky, Pavel; Berg, van den Albert; Eijkel, J.C.T.

    2012-01-01

    In this Letter we provide a theory to show that high-field electrokinetic translocation of DNA through nanopores or nanochannels causes large transient variations of the ionic concentrations in front and at the back of the DNA due to concentration polarization (CP). The CP causes strong local conduc

  19. Fine-tuning the feature size of nanoporous silver

    NARCIS (Netherlands)

    Detsi, Eric; Vukovic, Zorica; Punzhin, Sergey; Bronsveld, Paul M.; Onck, Patrick R.; De Hosson, Jeff Th M.

    2012-01-01

    We show that the characteristic ligament size of nanoporous Ag synthesized by chemical dissolution of Al from Ag-Al alloys can be tuned from the current submicrometer size (similar to 100-500 nm) down to a much smaller length scale (similar to 30-60 nm). This is achieved by suppressing the formation

  20. Аnodic formation of nanoporous crystalline niobium oxide

    Directory of Open Access Journals (Sweden)

    LEONID SKATKOV

    2014-05-01

    Full Text Available The research results of anodic deposition of crystalline niobium oxide are presented in this work. The factors that have an impact on crystalline phase nucleation and its primary growth are revealed. Dependence of morphology and properties of nanoporous niobium oxide on modes of its formation is shown.

  1. Solid-state nanopores for probing DNA and protein

    NARCIS (Netherlands)

    Plesa, C.

    2015-01-01

    Solid-state nanopores are small nanometer-scale holes in thin membranes. When used to separate two chambers containing salt solution, any biomolecule passing from one chamber to the other is forced to pass through the pore constriction. An electric field applied across the membrane is used to create

  2. Nanopore fabrication by heating au particles on ceramic substrates

    NARCIS (Netherlands)

    Vreede, de Lennart J.; Berg, van den Albert; Eijkel, Jan C.T.

    2015-01-01

    We found that gold nanoparticles, when heated to close to their melting point on substrates of amorphous SiO2 or amorphous Si3N4, move perpendicularly into the substrate. Dependent on applied temperatures, particles can become buried or leave nanopores of extreme aspect ratio (diameter congruent to

  3. Ergodicity of a single particle confined in a nanopore

    DEFF Research Database (Denmark)

    Bernardi, S.; Hansen, Jesper Schmidt; Frascolli, F.;

    2012-01-01

    We analyze the dynamics of a gas particle moving through a nanopore of adjustable width with particular emphasis on ergodicity. We give a measure of the portion of phase space that is characterized by quasiperiodic trajectories which break ergodicity. The interactions between particle and wall at...

  4. Structure-property relations of gold and graphene nanoporous actuators

    NARCIS (Netherlands)

    Saane, Siva Shankar Reddy

    2015-01-01

    Electrochemical nanoporous actuators have low weight, large specific surface areas and low voltage operating capabilities, making them attractive for application in small-scale electromechanical devices. The actuation strain of these materials at the macroscopic scale is a manifestation of microscop

  5. Onsager coefficients for binary mixture diffusion in nanopores

    NARCIS (Netherlands)

    Krishna, R.; van Baten, J.M.

    2008-01-01

    This paper presents a critical appraisal of current estimation methods for the Onsager coefficients L-11, L-22, and L-12 for binary mixture diffusion inside nanopores using pure component diffusivity data inputs. The appraisal is based on extensive sets of molecular dynamics (MD) simulation data on

  6. Wafer-scale nanostructure formation inside vertical nano-pores

    NARCIS (Netherlands)

    Berenschot, Johan W.; Sun, Xingwu; Le The, Hai; Tiggelaar, Roald M.; de Boer, Meint J.; Eijkel, Jan C.T.; Gardeniers, Johannes G.E.; Tas, Niels Roelof; Sarajlic, Edin

    2017-01-01

    We propose a wafer-scale technique for nanostructure formation inside vertically oriented, through-membrane nano-pores. It uses 50 nm monocrystalline silicon pillars as a mold, embedded in a silicon nitride membrane formed in an innovative step. The proposed technique paves the way towards advanced

  7. Signal transduction in the footsteps of goethe and schiller.

    Science.gov (United States)

    Friedrich, Karlheinz; Lindquist, Jonathan A; Entschladen, Frank; Serfling, Edgar; Thiel, Gerald; Kieser, Arnd; Giehl, Klaudia; Ehrhardt, Christina; Feller, Stephan M; Ullrich, Oliver; Schaper, Fred; Janssen, Ottmar; Hass, Ralf

    2009-02-04

    The historical town of Weimar in Thuringia, the "green heart of Germany" was the sphere of Goethe and Schiller, the two most famous representatives of German literature's classic era. Not yet entirely as influential as those two cultural icons, the Signal Transduction Society (STS) has nevertheless in the last decade established within the walls of Weimar an annual interdisciplinary Meeting on "Signal Transduction - Receptors, Mediators and Genes", which is well recognized as a most attractive opportunity to exchange results and ideas in the field.The 12th STS Meeting was held from October 28 to 31 and provided a state-of-the-art overview of various areas of signal transduction research in which progress is fast and discussion lively. This report is intended to share with the readers of CCS some highlights of the Meeting Workshops devoted to specific aspects of signal transduction.

  8. Signal Transduction in the Footsteps of Goethe and Schiller

    Directory of Open Access Journals (Sweden)

    Feller Stephan M

    2009-02-01

    Full Text Available Abstract The historical town of Weimar in Thuringia, the "green heart of Germany" was the sphere of Goethe and Schiller, the two most famous representatives of German literature's classic era. Not yet entirely as influential as those two cultural icons, the Signal Transduction Society (STS has nevertheless in the last decade established within the walls of Weimar an annual interdisciplinary Meeting on "Signal Transduction – Receptors, Mediators and Genes", which is well recognized as a most attractive opportunity to exchange results and ideas in the field. The 12th STS Meeting was held from October 28 to 31 and provided a state-of-the-art overview of various areas of signal transduction research in which progress is fast and discussion lively. This report is intended to share with the readers of CCS some highlights of the Meeting Workshops devoted to specific aspects of signal transduction.

  9. Transduction mechanisms and their applications in micromechanical devices

    NARCIS (Netherlands)

    Elwenspoek, M.; Blom, F.R.; Bouwstra, S.; Lammerink, T.S.J.; Pol, van de F.C.M.; Tilmans, H.A.C.; Popma, Th.J.A.; Fluitman, J.H.J.

    1989-01-01

    Transduction mechanisms and their applications in micromechanical actuators and resonating sensors are presented. They include piezoelectric, dielectric, electro-thermo-mechanic, opto-thermo-mechanic, and thermo-pneumatic mechanisms. Advantages and disadvantages with respect to technology and perfor

  10. Falsification of the ionic channel theory of hair cell transduction.

    Science.gov (United States)

    Rossetto, Michelangelo

    2013-11-01

    The hair cell provides the transduction of mechanical vibrations in the balance and acoustic sense of all vertebrates that swim, walk, or fly. The current theory places hair cell transduction in a mechanically controlled ion channel. Although the theory of a mechanical input modulating the flow of ions through an ion pore has been a useful tool, it is falsified by experimental data in the literature and can be definitively falsified by a proposed experiment.

  11. One-component systems dominate signal transduction in prokaryotes

    OpenAIRE

    Ulrich, Luke E; Koonin, Eugene V.; Zhulin, Igor B.

    2005-01-01

    Two-component systems that link environmental signals to cellular responses are viewed as the primary mode of signal transduction in prokaryotes. By analyz-ing information encoded by 145 prokaryotic genomes, we found that the majority of signal transduction systems consist of a single protein that contains input and output domains but lacks phosphotransfer domains typical of two-component systems. One-component systems are evolutionarily older, more widely distributed among bacteria and archa...

  12. Serotonin Signal Transduction in Two Groups of Autistic Patients

    Science.gov (United States)

    2013-12-01

    AD_________________ Award Number: W81XWH-11-1-0820 TITLE: Serotonin Signal Transduction in Two...Report 3. DATES COVERED 15 September 2011-14 September 2013 4. TITLE AND SUBTITLE Serotonin Signal Transduction in Two Groups of Autistic Patients...the arena of serotonin sensitivity, from those cells obtained from autistic subjects with normal serum serotonin . This was not the case, as the

  13. Highly sensitive detection using microring resonator and nanopores

    Science.gov (United States)

    Bougot-Robin, K.; Hoste, J. W.; Le Thomas, N.; Bienstman, P.; Edel, J. B.

    2016-04-01

    One of the most significant challenges facing physical and biological scientists is the accurate detection and identification of single molecules in free-solution environments. The ability to perform such sensitive and selective measurements opens new avenues for a large number of applications in biological, medical and chemical analysis, where small sample volumes and low analyte concentrations are the norm. Access to information at the single or few molecules scale is rendered possible by a fine combination of recent advances in technologies. We propose a novel detection method that combines highly sensitive label-free resonant sensing obtained with high-Q microcavities and position control in nanoscale pores (nanopores). In addition to be label-free and highly sensitive, our technique is immobilization free and does not rely on surface biochemistry to bind probes on a chip. This is a significant advantage, both in term of biology uncertainties and fewer biological preparation steps. Through combination of high-Q photonic structures with translocation through nanopore at the end of a pipette, or through a solid-state membrane, we believe significant advances can be achieved in the field of biosensing. Silicon microrings are highly advantageous in term of sensitivity, multiplexing, and microfabrication and are chosen for this study. In term of nanopores, we both consider nanopore at the end of a nanopipette, with the pore being approach from the pipette with nanoprecise mechanical control. Alternatively, solid state nanopores can be fabricated through a membrane, supporting the ring. Both configuration are discussed in this paper, in term of implementation and sensitivity.

  14. Nanoporous membranes with electrochemically switchable, chemically stabilized ionic selectivity.

    Science.gov (United States)

    Small, Leo J; Wheeler, David R; Spoerke, Erik D

    2015-10-28

    Nanopore size, shape, and surface charge all play important roles in regulating ionic transport through nanoporous membranes. The ability to control these parameters in situ provides a means to create ion transport systems tunable in real time. Here, we present a new strategy to address this challenge, utilizing three unique electrochemically switchable chemistries to manipulate the terminal functional group and control the resulting surface charge throughout ensembles of gold plated nanopores in ion-tracked polycarbonate membranes 3 cm(2) in area. We demonstrate the diazonium mediated surface functionalization with (1) nitrophenyl chemistry, (2) quinone chemistry, and (3) previously unreported trimethyl lock chemistry. Unlike other works, these chemistries are chemically stabilized, eliminating the need for a continuously applied gate voltage to maintain a given state and retain ionic selectivity. The effect of surface functionalization and nanopore geometry on selective ion transport through these functionalized membranes is characterized in aqueous solutions of sodium chloride at pH = 5.7. The nitrophenyl surface allows for ionic selectivity to be irreversibly switched in situ from cation-selective to anion-selective upon reduction to an aminophenyl surface. The quinone-terminated surface enables reversible changes between no ionic selectivity and a slight cationic selectivity. Alternatively, the trimethyl lock allows ionic selectivity to be reversibly switched by up to a factor of 8, approaching ideal selectivity, as a carboxylic acid group is electrochemically revealed or hidden. By varying the pore shape from cylindrical to conical, it is demonstrated that a controllable directionality can be imparted to the ionic selectivity. Combining control of nanopore geometry with stable, switchable chemistries facilitates superior control of molecular transport across the membrane, enabling tunable ion transport systems.

  15. Nanopore Sequencing: Electrical Measurements of the Code of Life.

    Science.gov (United States)

    Timp, Winston; Mirsaidov, Utkur M; Wang, Deqiang; Comer, Jeff; Aksimentiev, Aleksei; Timp, Gregory

    2010-05-01

    Sequencing a single molecule of deoxyribonucleic acid (DNA) using a nanopore is a revolutionary concept because it combines the potential for long read lengths (>5 kbp) with high speed (1 bp/10 ns), while obviating the need for costly amplification procedures due to the exquisite single molecule sensitivity. The prospects for implementing this concept seem bright. The cost savings from the removal of required reagents, coupled with the speed of nanopore sequencing places the $1000 genome within grasp. However, challenges remain: high fidelity reads demand stringent control over both the molecular configuration in the pore and the translocation kinetics. The molecular configuration determines how the ions passing through the pore come into contact with the nucleotides, while the translocation kinetics affect the time interval in which the same nucleotides are held in the constriction as the data is acquired. Proteins like α-hemolysin and its mutants offer exquisitely precise self-assembled nanopores and have demonstrated the facility for discriminating individual nucleotides, but it is currently difficult to design protein structure ab initio, which frustrates tailoring a pore for sequencing genomic DNA. Nanopores in solid-state membranes have been proposed as an alternative because of the flexibility in fabrication and ease of integration into a sequencing platform. Preliminary results have shown that with careful control of the dimensions of the pore and the shape of the electric field, control of DNA translocation through the pore is possible. Furthermore, discrimination between different base pairs of DNA may be feasible. Thus, a nanopore promises inexpensive, reliable, high-throughput sequencing, which could thrust genomic science into personal medicine.

  16. Radiation detector

    Energy Technology Data Exchange (ETDEWEB)

    Taleyarkhan, Rusi P.

    2017-06-27

    Alpha particle detecting devices are disclosed that have a chamber that can hold a fluid in a tensioned metastable state. The chamber is tuned with a suitable fluid and tension such that alpha emitting materials such as radon and one or more of its decay products can be detected. The devices can be portable and can be placed in areas, such as rooms in dwellings or laboratories and used to measure radon in these areas, in situ and in real time. The disclosed detectors can detect radon at and below 4 pCi/L in air; also, at and below 4,000 pCi/L or 300 pCi/L in water.

  17. Modeling Signal Transduction and Lipid Rafts in Immune Cells

    Science.gov (United States)

    Prasad, Ashok

    2011-03-01

    Experimental evidence increasingly suggests that lipid rafts are nanometer sized cholesterol dependent dynamic assemblies enriched in sphingolipids and associated proteins. Lipid rafts are dynamic structures that break-up and reform on a relatively short time-scale, and are believed to facilitate the interactions of raft-associated proteins. The role of these rafts in signaling has been controversial, partly due to controversies regarding the existence and nature of the rafts themselves. Experimental evidence has indicated that in several cell types, especially T cells, rafts do influence signal transduction and T cell activation. Given the emerging consensus on the biophysical character of lipid rafts, the question can be asked as to what roles they possibly play in signal transduction. Here we carry out simulations of minimal models of the signal transduction network that regulates Src-family kinase dynamics in T cells and other cell types. By separately treating raft-based biochemical interactions, we find that rafts can indeed putatively play an important role in signal transduction, and in particular may affect the sensitivity of signal transduction. This illuminates possible functional consequences of membrane heterogeneities on signal transduction and points towards mechanisms for spatial control of signaling by cells.

  18. Engineering key components in a synthetic eukaryotic signal transduction pathway.

    Science.gov (United States)

    Antunes, Mauricio S; Morey, Kevin J; Tewari-Singh, Neera; Bowen, Tessa A; Smith, J Jeff; Webb, Colleen T; Hellinga, Homme W; Medford, June I

    2009-01-01

    Signal transduction underlies how living organisms detect and respond to stimuli. A goal of synthetic biology is to rewire natural signal transduction systems. Bacteria, yeast, and plants sense environmental aspects through conserved histidine kinase (HK) signal transduction systems. HK protein components are typically comprised of multiple, relatively modular, and conserved domains. Phosphate transfer between these components may exhibit considerable cross talk between the otherwise apparently linear pathways, thereby establishing networks that integrate multiple signals. We show that sequence conservation and cross talk can extend across kingdoms and can be exploited to produce a synthetic plant signal transduction system. In response to HK cross talk, heterologously expressed bacterial response regulators, PhoB and OmpR, translocate to the nucleus on HK activation. Using this discovery, combined with modification of PhoB (PhoB-VP64), we produced a key component of a eukaryotic synthetic signal transduction pathway. In response to exogenous cytokinin, PhoB-VP64 translocates to the nucleus, binds a synthetic PlantPho promoter, and activates gene expression. These results show that conserved-signaling components can be used across kingdoms and adapted to produce synthetic eukaryotic signal transduction pathways.

  19. Nanoporous-carbon adsorbers for chemical microsensors.

    Energy Technology Data Exchange (ETDEWEB)

    Overmyer, Donald L.; Siegal, Michael P.; Staton, Alan W.; Provencio, Paula Polyak; Yelton, William Graham

    2004-11-01

    Chemical microsensors rely on partitioning of airborne chemicals into films to collect and measure trace quantities of hazardous vapors. Polymer sensor coatings used today are typically slow to respond and difficult to apply reproducibly. The objective of this project was to produce a durable sensor coating material based on graphitic nanoporous-carbon (NPC), a new material first studied at Sandia, for collection and detection of volatile organic compounds (VOC), toxic industrial chemicals (TIC), chemical warfare agents (CWA) and nuclear processing precursors (NPP). Preliminary studies using NPC films on exploratory surface-acoustic-wave (SAW) devices and as a {micro}ChemLab membrane preconcentrator suggested that NPC may outperform existing, irreproducible coatings for SAW sensor and {micro}ChemLab preconcentrator applications. Success of this project will provide a strategic advantage to the development of a robust, manufacturable, highly-sensitive chemical microsensor for public health, industrial, and national security needs. We use pulsed-laser deposition to grow NPC films at room-temperature with negligible residual stress, and hence, can be deposited onto nearly any substrate material to any thickness. Controlled deposition yields reproducible NPC density, morphology, and porosity, without any discernable variation in surface chemistry. NPC coatings > 20 {micro}m thick with density < 5% that of graphite have been demonstrated. NPC can be 'doped' with nearly any metal during growth to provide further enhancements in analyte detection and selectivity. Optimized NPC-coated SAW devices were compared directly to commonly-used polymer coated SAWs for sensitivity to a variety of VOC, TIC, CWA and NPP. In every analyte, NPC outperforms each polymer coating by multiple orders-of-magnitude in detection sensitivity, with improvements ranging from 103 to 108 times greater detection sensitivity! NPC-coated SAW sensors appear capable of detecting most analytes

  20. Discrimination of oligonucleotides of different lengths with a wild-type aerolysin nanopore

    Science.gov (United States)

    Cao, Chan; Ying, Yi-Lun; Hu, Zheng-Li; Liao, Dong-Fang; Tian, He; Long, Yi-Tao

    2016-08-01

    Protein nanopores offer an inexpensive, label-free method of analysing single oligonucleotides. The sensitivity of the approach is largely determined by the characteristics of the pore-forming protein employed, and typically relies on nanopores that have been chemically modified or incorporate molecular motors. Effective, high-resolution discrimination of oligonucleotides using wild-type biological nanopores remains difficult to achieve. Here, we show that a wild-type aerolysin nanopore can resolve individual short oligonucleotides that are 2 to 10 bases long. The sensing capabilities are attributed to the geometry of aerolysin and the electrostatic interactions between the nanopore and the oligonucleotides. We also show that the wild-type aerolysin nanopores can distinguish individual oligonucleotides from mixtures and can monitor the stepwise cleavage of oligonucleotides by exonuclease I.

  1. Up and down translocation events and electric double-layer formation inside solid-state nanopores.

    Science.gov (United States)

    Zanjani, Mehdi B; Engelke, Rebecca E; Lukes, Jennifer R; Meunier, Vincent; Drndić, Marija

    2015-08-01

    We present a theoretical study of nanorod translocation events through solid-state nanopores of different sizes which result in positive or negative ion conductance changes. Using theoretical models, we show that positive conductance changes or up events happen for nanopore diameters smaller than a transition diameter dt, and negative conductance changes or down events occur for nanopore diameters larger than dt. We investigate the underlying physics of such translocation phenomena and describe the significance of the electric double-layer effects for nanopores with small diameters. Furthermore, for nanopores with large diameters, it is shown that a geometric model, formulated based on the nanoparticle blockade inside the nanopore, provides a straightforward and reasonably accurate prediction of ion conductance change. Based on this concept, we also implement a method to distinguish and detect nanorods of different sizes by focusing solely on the sign and not the exact value of the conductance change.

  2. Instantaneous translocation statuses on the fluctuation of ionic current for DNA through graphene nanopore

    CERN Document Server

    Lv, Wenping

    2013-01-01

    Graphene nanopore has the ultra-high DNA sequencing sensitivity for the atomic thickness and excellent electronic properties. Extracting the sequence information of DNA from the blocked ionic current is the crucial step for the ionic current based sequencing technology on nanopores. In this letter, the investigation of the effect of measurement induced noise of ionic current as well as the instantaneous translocation statuses from the fluctuation of ionic current signals for DNA through a graphene nanopore was carried out based on molecular dynamics simulations. We found that the molecular thermal noise of ionic current in a graphene nanopore was related with the time interval of measurement, and the tiny conformational and dynamical variations of DNA could be revealed from the fluctuation of the denoised ionic current through a graphene nanopore. Additionally, the neighborhood effect of ionic current blockage for DNA near a graphene nanopore (within 1.5 nm) was observed. These findings suggest that the ionic...

  3. Electronic conductance model in constricted MoS{sub 2} with nanopores

    Energy Technology Data Exchange (ETDEWEB)

    Sarathy, Aditya [Beckman Institute for Advanced Science and Technology, University of Illinois, Urbana, Illinois 61801 (United States); Department of Electrical and Computer Engineering, University of Illinois, Urbana, Illinois 61801 (United States); Leburton, Jean-Pierre, E-mail: jleburto@illinois.edu [Beckman Institute for Advanced Science and Technology, University of Illinois, Urbana, Illinois 61801 (United States); Department of Electrical and Computer Engineering, University of Illinois, Urbana, Illinois 61801 (United States); Department of Physics, University of Illinois, Urbana, Illinois 61801 (United States)

    2016-02-01

    We describe a self-consistent model for electronic transport in a molybdenum di-sulphide (MoS{sub 2}) layer containing a nanopore in a constricted geometry. Our approach is based on a semi-classical thermionic Poisson-Boltzmann technique using a two-valley model within the effective mass approximation to investigate perturbations caused by the nanopore on the electronic current. In particular, we show that the effect of the nanopore on the conductance is reduced as the nanopore is moved from the center to the layer edges. Our model is applied to the detection of DNA translocating through the nanopore, which reveals current features similar to those as predicted in nanopore graphene layers.

  4. Effects of nanopore size on the flow-induced star polymer translocation.

    Science.gov (United States)

    Chen, Qiaoyue; Zhang, Lili; Ding, Mingming; Duan, Xiaozheng; Huang, Yineng; Shi, Tongfei

    2016-11-01

    We study the effects of the nanopore size on the flow-induced capture of the star polymer by a nanopore and the afterward translocation, using a hybrid simulation method that couples point particles into a fluctuating lattice-Boltzmann fluid. Our simulation demonstrates that the optimal forward arm number decreases slowly with the increase of the length of the nanopore. Compared to the minor effect of the length of the nanopore, the optimal forward arm number obviously increases with the increase of the width of the nanopore, which can clarify the current controversial issue for the optimal forward arm number between the theory and experiments. In addition, our results indicate that the critical velocity flux of the star polymer is independent of the nanopore size. Our work bridges the experimental results and the theoretical understanding, which can provide comprehensive insights for the characterization and the purification of the star polymers.

  5. Theory of Sorption Hysteresis in Nanoporous Solids: I. Snap-Through Instabilities

    CERN Document Server

    Bazant, Zdenek P

    2011-01-01

    The sorption-desorption hysteresis observed in many nanoporous solids, at vapor pressures low enough for the the liquid (capillary) phase of the adsorbate to be absent, has long been vaguely attributed to changes in the nanopore structure, but no mathematically consistent explanation has been presented. The present work takes an analytical approach to account for discrete molecular forces in the nanopore fluid and proposes two related mechanisms that can explain the hysteresis at low vapor pressure without assuming any change in the nanopore structure. The first mechanism, presented in Part I, consists of a series of snap-through instabilities during the filling or emptying of non-uniform nanopores or nanoscale asperities. The instabilities are caused by non-uniqueness in the misfit disjoining pressures engendered by a difference between the nanopore width and an integer multiple of the thickness of a monomolecular adsorption layer. The second mechanism, presented in Part II, consists of molecular coalescence...

  6. CLIC Detector Power Requirements

    CERN Document Server

    Gaddi, A

    2013-01-01

    An estimate for the CLIC detector power requirements is outlined starting from the available data on power consumptions of the four LHC experiments and considering the differences between a typical LHC Detector (CMS) and the CLIC baseline detector concept. In particular the impact of the power pulsing scheme for the CLIC Detector electronics on the overall detector consumption is considered. The document will be updated with the requirements of the sub-detector electronics once they are more defined.

  7. Pixel Vertex Detectors

    OpenAIRE

    Wermes, Norbert

    2006-01-01

    Pixel vertex detectors are THE instrument of choice for the tracking of charged particles close to the interaction point at the LHC. Hybrid pixel detectors, in which sensor and read-out IC are separate entities, constitute the present state of the art in detector technology. Three of the LHC detectors use vertex detectors based on this technology. A development period of almost 10 years has resulted in pixel detector modules which can stand the extreme rate and timing requirements as well as ...

  8. Microfluidic anodization of aluminum films for the fabrication of nanoporous lipid bilayer support structures

    OpenAIRE

    2011-01-01

    Solid state nanoporous membranes show great potential as support structures for biointerfaces. In this paper, we present a technique for fabricating nanoporous alumina membranes under constant-flow conditions in a microfluidic environment. This approach allows the direct integration of the fabrication process into a microfluidic setup for performing biological experiments without the need to transfer the brittle nanoporous material. We demonstrate this technique by using the same microfluidic...

  9. Fracture of nanoporous organosilicate thin films

    Science.gov (United States)

    Gage, David Maxwell

    Nanoporous organosilicate thin films are attractive candidates for a number of emerging technologies, ranging from biotechnology to optics and microelectronics. However, integration of these materials is challenged by their fragile nature and susceptibility to mechanical failure. Debonding and cohesive cracking of the organosilicate film are principal concerns that threaten the reliability and yield of device structures. Despite the intense interest in these materials, there is currently a need for greater understanding of the relationship between glass structure and thermomechanical integrity. The objective of this research was to investigate strategies for improving mechanical performance through variations in film chemistry, process conditions, and pore morphology. Several approaches to effecting improvements in elastic and fracture properties were examined in depth, including post-deposition curing, molecular reinforcement using hydrocarbon network groups, and manipulation of pore size and architecture. Detailed structural characterization was employed along with quantitative fracture mechanics based testing methods. It was shown that ultra-violet irradiation and electron bombardment post-deposition treatments can significantly impact glass structure in ways that cannot be achieved through thermal activation alone. Both techniques demonstrated high porogen removal efficiency and enhanced the glass matrix through increased network connectivity and local bond rearrangements. The increases in network connectivity were achieved predominantly through the replacement of terminal groups, particularly methyl and silanol groups, with Si-O network bonds. Nuclear magnetic resonance spectroscopy was shown to be a powerful and quantitative method for gaining new insight into the underlying cure reactions and mechanisms. It was demonstrated that curing leads to significant progressive enhancement of elastic modulus and adhesive fracture energies due to increased network bond

  10. EDITORIAL: Special section on signal transduction Special section on signal transduction

    Science.gov (United States)

    Shvartsman, Stanislav

    2012-08-01

    This special section of Physical Biology focuses on multiple aspects of signal transduction, broadly defined as the study of the mechanisms by which cells communicate with their environment. Mechanisms of cell communication involve detection of incoming signals, which can be chemical, mechanical or electromagnetic, relaying these signals to intracellular processes, such as cytoskeletal networks or gene expression systems, and, ultimately, converting these signals to responses such as cell differentiation or death. Given the multiscale nature of signal transduction systems, they must be studied at multiple levels, from the identities and structures of molecules comprising signal detection and interpretation networks, to the systems-level properties of these networks. The 11 papers in this special section illustrate some of the most exciting aspects of signal transduction research. The first two papers, by Marie-Anne Félix [1] and by Efrat Oron and Natalia Ivanova [2], focus on cell-cell interactions in developing tissues, using vulval patterning in worm and cell fate specification in mammalian embryos as prime examples of emergent cell behaviors. Next come two papers from the groups of Julio Saez-Rodriguez [3] and Kevin Janes [4]. These papers discuss how the causal relationships between multiple components of signaling systems can be inferred using multivariable statistical analysis of empirical data. An authoritative review by Zarnitsyna and Zhu [5] presents a detailed discussion of the sequence of signaling events involved in T-cell triggering. Once the structure and components of the signaling systems are determined, they can be modeled using approaches that have been successful in other physical sciences. As two examples of such approaches, reviews by Rubinstein [6] and Kholodenko [7], present reaction-diffusion models of cell polarization and thermodynamics-based models of gene regulation. An important class of models takes the form of enzymatic networks

  11. MUON DETECTOR

    CERN Multimedia

    F. Gasparini

    DT As announced in the previous Bulletin MU DT completed the installation of the vertical chambers of barrel wheels 0, +1 and +2. 242 DT and RPC stations are now installed in the negative barrel wheels. The missing 8 (4 in YB-1 and 4 in YB-2) chambers can be installed only after the lowering of the two wheels into the UX cavern, which is planned for the last quarter of the year. Cabling on the surface of the negative wheels was finished in May after some difficulties with RPC cables. The next step was to begin the final commissioning of the wheels with the final trigger and readout electronics. Priority was giv¬en to YB0 in order to check everything before the chambers were covered by cables and services of the inner detectors. Commissioning is not easy since it requires both activity on the central and positive wheels underground, as well as on the negative wheels still on the surface. The DT community is requested to commission the negative wheels on surface to cope with a possible lack of time a...

  12. Toward sensitive graphene nanoribbon-nanopore devices by preventing electron beam-induced damage.

    Science.gov (United States)

    Puster, Matthew; Rodríguez-Manzo, Julio A; Balan, Adrian; Drndić, Marija

    2013-12-23

    Graphene-based nanopore devices are promising candidates for next-generation DNA sequencing. Here we fabricated graphene nanoribbon-nanopore (GNR-NP) sensors for DNA detection. Nanopores with diameters in the range 2-10 nm were formed at the edge or in the center of graphene nanoribbons (GNRs), with widths between 20 and 250 nm and lengths of 600 nm, on 40 nm thick silicon nitride (SiN(x)) membranes. GNR conductance was monitored in situ during electron irradiation-induced nanopore formation inside a transmission electron microscope (TEM) operating at 200 kV. We show that GNR resistance increases linearly with electron dose and that GNR conductance and mobility decrease by a factor of 10 or more when GNRs are imaged at relatively high magnification with a broad beam prior to making a nanopore. By operating the TEM in scanning TEM (STEM) mode, in which the position of the converged electron beam can be controlled with high spatial precision via automated feedback, we were able to prevent electron beam-induced damage and make nanopores in highly conducting GNR sensors. This method minimizes the exposure of the GNRs to the beam before and during nanopore formation. The resulting GNRs with unchanged resistances after nanopore formation can sustain microampere currents at low voltages (∼50 mV) in buffered electrolyte solution and exhibit high sensitivity, with a large relative change of resistance upon changes of gate voltage, similar to pristine GNRs without nanopores.

  13. Stochastic nanopore sensors for the detection of terrorist agents: Current status and challenges

    Energy Technology Data Exchange (ETDEWEB)

    Liu Aihua; Zhao Qitao [Department of Chemistry and Biochemistry, University of Texas at Arlington, Arlington, TX 76019-0065 (United States); Guan Xiyun, E-mail: xguan@uta.edu [Department of Chemistry and Biochemistry, University of Texas at Arlington, Arlington, TX 76019-0065 (United States)

    2010-08-24

    Nanopore stochastic sensor works by monitoring the ionic current modulations induced by the passage of analytes of interest through a single pore, which can be obtained from a biological ion channel by self-assembly or artificially fabricated in a solid-state membrane. In this minireview, we overview the use of biological nanopores and artificial nanopores for the detection of terrorist agents including explosives, organophosphorus nerve agents, nitrogen mustards, organoarsenic compounds, toxins, and viruses. We also discuss the current challenge in the development of deployable nanopore sensors for real-world applications.

  14. Simultaneous Size Control of Microcapsule and Its Nanopores Using Polymer Concentration

    Science.gov (United States)

    Jemyung Cha,; Eun Ho Jeong,; Arakawa Takahiro,; Kyung Chun Kim,; Shuich Shoji,; Jeung Sang Go,

    2010-03-01

    Polymeric microcapsules with nanopores are produced using the droplet-based self-assembly of a block copolymer in the microfluidic channel. Differently from the conventional wise, the sizes of the microcapsule and its nanopores are controlled by changing the concentration of the block copolymer dissolved in an organic solvent. The increase in the polymer concentration shows the increase in the size of the microcapsule and the decrease of the size and number of the nanopores. Also, to obtain the optimal morphology of the nanopores in the microcapsule, the removal process of a surfactant is newly developed by using a microporous metal mesh.

  15. Molecular release from patterned nanoporous gold thin films

    Science.gov (United States)

    Kurtulus, Ozge; Daggumati, Pallavi; Seker, Erkin

    2014-05-01

    Nanostructured materials have shown significant potential for biomedical applications that require high loading capacity and controlled release of drugs. Nanoporous gold (np-Au), produced by an alloy corrosion process, is a promising novel material that benefits from compatibility with microfabrication, tunable pore morphology, electrical conductivity, well-established gold-thiol conjugate chemistry, and biocompatibility. While np-Au's non-biological applications are abundant, its performance in the biomedical field is nascent. In this work, we employ a combination of techniques including nanoporous thin film synthesis, quantitative electron microscopy, fluorospectrometry, and electrochemical surface characterization to study loading capacity and molecular release kinetics as a function of film properties and discuss underlying mechanisms. The sub-micron-thick sputter-coated nanoporous gold films provide small-molecule loading capacities up to 1.12 μg cm-2 and molecular release half-lives between 3.6 hours to 12.8 hours. A systematic set of studies reveals that effective surface area of the np-Au thin films on glass substrates plays the largest role in determining loading capacity. The release kinetics on the other hand depends on a complex interplay of micro- and nano-scale morphological features.Nanostructured materials have shown significant potential for biomedical applications that require high loading capacity and controlled release of drugs. Nanoporous gold (np-Au), produced by an alloy corrosion process, is a promising novel material that benefits from compatibility with microfabrication, tunable pore morphology, electrical conductivity, well-established gold-thiol conjugate chemistry, and biocompatibility. While np-Au's non-biological applications are abundant, its performance in the biomedical field is nascent. In this work, we employ a combination of techniques including nanoporous thin film synthesis, quantitative electron microscopy

  16. A transduction path method of solid state sensor analysis and investigation

    OpenAIRE

    Dubay, Curtis L.

    1984-01-01

    Approved for public release; distribution is unlimited This paper proposes a "transduction path" method of analysis for solid state sensors. It is based upon the idea that a sensor represents a transduction path from some input measurand to an electrical output. The transduction path may consist of one or more transduction or modification principles drawn from all fields of science. Also proposed is a "transduction path diagram" which provides a graphical representation of a transductio...

  17. Theory and modeling of cylindrical thermo-acoustic transduction

    Energy Technology Data Exchange (ETDEWEB)

    Tong, Lihong, E-mail: lhtong@ecjtu.edu.cn [School of Civil Engineering and Architecture, East China Jiaotong University, Nanchang, Jiangxi (China); Lim, C.W. [Department of Architecture and Civil Engineering, City University of Hong Kong, Kowloon, Hong Kong SAR (China); Zhao, Xiushao; Geng, Daxing [School of Civil Engineering and Architecture, East China Jiaotong University, Nanchang, Jiangxi (China)

    2016-06-03

    Models both for solid and thinfilm-solid cylindrical thermo-acoustic transductions are proposed and the corresponding acoustic pressure solutions are obtained. The acoustic pressure for an individual carbon nanotube (CNT) as a function of input power is investigated analytically and it is verified by comparing with the published experimental data. Further numerical analysis on the acoustic pressure response and characteristics for varying input frequency and distance are also examined both for solid and thinfilm-solid cylindrical thermo-acoustic transductions. Through detailed theoretical and numerical studies on the acoustic pressure solution for thinfilm-solid cylindrical transduction, it is concluded that a solid with smaller thermal conductivity favors to improve the acoustic performance. In general, the proposed models are applicable to a variety of cylindrical thermo-acoustic devices performing in different gaseous media. - Highlights: • Theory and modeling both for solid and thinfilm-solid cylindrical thermo-acoustic transductions are proposed. • The modeling is verified by comparing with the published experimental data. • Acoustic response characteristics of cylindrical thermo-acoustic transductions are predicted by the proposed model.

  18. Nanoporous Anodic Alumina: A Versatile Platform for Optical Biosensors

    Directory of Open Access Journals (Sweden)

    Abel Santos

    2014-05-01

    Full Text Available Nanoporous anodic alumina (NAA has become one of the most promising nanomaterials in optical biosensing as a result of its unique physical and chemical properties. Many studies have demonstrated the outstanding capabilities of NAA for developing optical biosensors in combination with different optical techniques. These results reveal that NAA is a promising alternative to other widely explored nanoporous platforms, such as porous silicon. This review is aimed at reporting on the recent advances and current stage of development of NAA-based optical biosensing devices. The different optical detection techniques, principles and concepts are described in detail along with relevant examples of optical biosensing devices using NAA sensing platforms. Furthermore, we summarise the performance of these devices and provide a future perspective on this promising research field.

  19. Giant Osmotic Pressure in the Forced Wetting of Hydrophobic Nanopores.

    Science.gov (United States)

    Michelin-Jamois, Millan; Picard, Cyril; Vigier, Gérard; Charlaix, Elisabeth

    2015-07-17

    The forced intrusion of water in hydrophobic nanoporous pulverulent material is of interest for quick storage of energy. With nanometric pores the energy storage capacity is controlled by interfacial phenomena. With subnanometric pores, we demonstrate that a breakdown occurs with the emergence of molecular exclusion as a leading contribution. This bulk exclusion effect leads to an osmotic contribution to the pressure that can reach levels never previously sustained. We illustrate, on various electrolytes and different microporous materials, that a simple osmotic pressure law accounts quantitatively for the enhancement of the intrusion and extrusion pressures governing the forced wetting and spontaneous drying of the nanopores. Using electrolyte solutions, energy storage and power capacities can be widely enhanced.

  20. Interface elasticity effects in polymer-filled nanoporous metals

    Science.gov (United States)

    Wilmers, J.; McBride, A.; Bargmann, S.

    2017-02-01

    A continuum formulation for electroactive composites made from nanoporous gold and ion-conducting polymer is proposed. A novel extension of surface elasticity theory is developed to account for the high surface-to-volume ratio of nanoporous gold, and to capture the chemoelectromechanical coupling that occurs on the interface between the metal and the polymer. This continuum formulation accounts for the fully non-linear behaviour exhibited by the composite. The balance of linear momentum, Gauß's flux theorem and a relation for the transport of charge carriers are introduced in the bulk material as well as on the interface to describe the non-linear multiphysics and highly coupled response of the actuator. The resulting system of non-linear equations is solved using the finite element method. A series of numerical examples is presented to elucidate the theory.

  1. Single-crystalline nanoporous Nb2O5 nanotubes

    Directory of Open Access Journals (Sweden)

    Liu Jun

    2011-01-01

    Full Text Available Abstract Single-crystalline nanoporous Nb2O5 nanotubes were fabricated by a two-step solution route, the growth of uniform single-crystalline Nb2O5 nanorods and the following ion-assisted selective dissolution along the [001] direction. Nb2O5 tubular structure was created by preferentially etching (001 crystallographic planes, which has a nearly homogeneous diameter and length. Dense nanopores with the diameters of several nanometers were created on the shell of Nb2O5 tubular structures, which can also retain the crystallographic orientation of Nb2O5 precursor nanorods. The present chemical etching strategy is versatile and can be extended to different-sized nanorod precursors. Furthermore, these as-obtained nanorod precursors and nanotube products can also be used as template for the fabrication of 1 D nanostructured niobates, such as LiNbO3, NaNbO3, and KNbO3.

  2. Capacitance-Power-Hysteresis Trilemma in Nanoporous Supercapacitors

    Directory of Open Access Journals (Sweden)

    Alpha A. Lee

    2016-06-01

    Full Text Available Nanoporous supercapacitors are an important player in the field of energy storage that fill the gap between dielectric capacitors and batteries. The key challenge in the development of supercapacitors is the perceived trade-off between capacitance and power delivery. Current efforts to boost the capacitance of nanoporous supercapacitors focus on reducing the pore size so that they can only accommodate a single layer of ions. However, this tight packing compromises the charging dynamics and hence power density. We show via an analytical theory and Monte Carlo simulations that charging is sensitively dependent on the affinity of ions to the pores, and that high capacitances can be obtained for ionophobic pores of widths significantly larger than the ion diameter. Our theory also predicts that charging can be hysteretic with a significant energy loss per cycle for intermediate ionophilicities. We use these observations to explore the parameter regimes in which a capacitance-power-hysteresis trilemma may be avoided.

  3. Piezoelectric and dielectric properties of nanoporous polyvinylidence fluoride (PVDF) films

    Science.gov (United States)

    Zhao, Ping; Wang, Shifa; Kadlec, Alec

    2016-04-01

    A nanoporous polyvinylidene Fluoride (PVDF) thin film was developed for applications in energy harvesting, medical surgeries, and industrial robotics. This sponge-like nanoporous PVDF structure dramatically enhanced the piezoelectric effect because it yielded considerably large deformation under a small force. A casting-etching method was adopted to make films, which is effective to control the porosity, flexibility, and thickness of the film. The films with various Zinc Oxide (ZnO) mass fractions ranging from 10 to 50% were fabricated to investigate the porosity effect. The piezoelectric coefficient d33 as well as dielectric constant and loss of the films were characterized. The results were analyzed and the optimal design of the film with the right amount of ZnO nanoparticles was determined.

  4. Chemical Synthesis and Electrochemical Characterization of Nanoporous Gold films

    DEFF Research Database (Denmark)

    Christiansen, Mikkel U-B; Seselj, Nedjeljko; Engelbrekt, Christian

    Nanoporous gold (NPG) is conventionally made via dealloying methods1. We present an alternative method for bottom-up chemical synthesis of nanoporous gold film (cNPGF), with properties resembling those of dealloyed NPG. The developed procedure is simple and only benign chemicals are used....... Chloroauric acid is reduced to nanoparticles (NPs) by 2-(N-morpholino)ethanesulfonate, acting also as a protecting agent for the NPs and as a pH buffer, while potassium chloride is used to control ionic strength. The film formation is controlled by parameters such as temperature, ionic strength...... and protonation of the buffer. Therefore, it is possible to influence the trapping of nanoparticles at the air-liquid interface, yielding porous thin film structures, Figure 1A. The produced cNPGFs have been investigated by atomic force microscopy (AFM), transmission electron microscopy (TEM) and cyclic...

  5. Quantum Capacitance Modifies Interionic Interactions in Semiconducting Nanopores

    CERN Document Server

    Lee, Alpha A; Goriely, Alain

    2016-01-01

    Nanopores made with low dimensional semiconducting materials, such as carbon nanotubes and graphene slit pores, are used in supercapacitors. In theories and simulations of their operation, it is often assumed that such pores screen ion-ion interactions like metallic pores, i.e. that screening leads to an exponential decay of the interaction potential with ion separation. By introducing a quantum capacitance that accounts for the density of states in the material, we show that ion-ion interactions in carbon nanotubes and graphene slit pores actually decay algebraically with ion separation. This result suggests a new avenue of capacitance optimization based on tuning the electronic structure of a pore: a marked enhancement in capacitance might be achieved by developing nanopores made with metallic materials or bulk semimetallic materials.

  6. Physics behind Water Transport through Nanoporous Boron Nitride and Graphene.

    Science.gov (United States)

    Garnier, Ludovic; Szymczyk, Anthony; Malfreyt, Patrice; Ghoufi, Aziz

    2016-09-01

    In this work, molecular dynamics simulations were used to determine the surface tension profile of water on graphene and boron nitride (BN) multilayers and to predict water permeation through nanoporous graphene and BN membranes. For both graphene and BN multilayers, a decrease in surface tension (γ) was evidenced as the number of layers increased. This lessening in γ was shown to result from a negative surface tension contribution due to long-range wetting of water, which also contributes to lower water permeation through a two-layer membrane with respect to permeation through a monolayer. We also showed that a decrease in water surface tension on a BN monolayer with regards to graphene was at the origin of an increase in water permeation through BN. Our findings suggest that nanoporous BN membranes could be attractive candidates for desalination applications.

  7. Water and Molecular Transport across Nanopores in Monolayer Graphene Membranes

    Science.gov (United States)

    Jang, Doojoon; O'Hern, Sean; Kidambi, Piran; Boutilier, Michael; Song, Yi; Idrobo, Juan-Carlos; Kong, Jing; Laoui, Tahar; Karnik, Rohit

    2015-11-01

    Graphene's atomic thickness and high tensile strength allow it to outstand as backbone material for next-generation high flux separation membrane. Molecular dynamics simulations predicted that a single-layer graphene membrane could exhibit high permeability and selectivity for water over ions/molecules, qualifying as novel water desalination membranes. However, experimental investigation of water and molecular transport across graphene nanopores had remained barely explored due to the presence of intrinsic defects and tears in graphene. We introduce two-step methods to seal leakage across centimeter scale single-layer graphene membranes create sub-nanometer pores using ion irradiation and oxidative etching. Pore creation parameters were varied to explore the effects of created pore structures on water and molecular transport driven by forward osmosis. The results demonstrate the potential of nanoporous graphene as a reliable platform for high flux nanofiltration membranes.

  8. Molecular diagnostics for personal medicine using a nanopore.

    Science.gov (United States)

    Mirsaidov, Utkur M; Wang, Deqiang; Timp, Winston; Timp, Gregory

    2010-01-01

    Semiconductor nanotechnology has created the ultimate analytical tool: a nanopore with single molecule sensitivity. This tool offers the intriguing possibility of high-throughput, low cost sequencing of DNA with the absolute minimum of material and preprocessing. The exquisite single molecule sensitivity obviates the need for costly and error-prone procedures like polymerase chain reaction amplification. Instead, nanopore sequencing relies on the electric signal that develops when a DNA molecule translocates through a pore in a membrane. If each base pair has a characteristic electrical signature, then ostensibly a pore could be used to analyze the sequence by reporting all of the signatures in a single read without resorting to multiple DNA copies. The potential for a long read length combined with high translocation velocity should make resequencing inexpensive and allow for haplotyping and methylation profiling in a chromosome.

  9. Nanoporous poly(lactide) by olefin metathesis degradation.

    Science.gov (United States)

    Bertrand, Arthur; Hillmyer, Marc A

    2013-07-31

    We describe an approach to ordered nanoporous poly(lactide) that relies on self-assembly of poly(butadiene)-poly(lactide) (PB-PLA) diblock copolymers followed by selective degradation of PB using olefin metathesis. The block copolymers were obtained by a combination of anionic and ring-opening transesterification polymerizations. The molar mass of each block was tailored to target materials with either a lamellar or cylindrical microphase-separated morphology. Orientation of these nanoscale domains was induced in thin films and monolithic samples through solvent annealing and mechanical deformation, respectively. Selective degradation of PB was achieved by immersing the samples in a solution of Grubbs first-generation catalyst in cyclohexane, a nonsolvent for PLA. Successful elimination of PB was confirmed by size-exclusion chromatography and (1)H NMR spectroscopy. Direct imaging of the resulting nanoporous PLA was obtained by scanning electron microscopy.

  10. Enantioselective Nanoporous Carbon Based on Chiral Ionic Liquids.

    Science.gov (United States)

    Fuchs, Ido; Fechler, Nina; Antonietti, Markus; Mastai, Yitzhak

    2016-01-04

    One of the greatest challenges in modern chemical processing is to achieve enantiospecific control in chemical reactions using chiral media such as chiral mesoporous materials. Herein, we describe a novel and effective synthetic pathway for the preparation of enantioselective nanoporous carbon, based on chiral ionic liquids (CILs). CILs of phenylalanine (CIL(Phe)) are used as precursors for the carbonization of chiral mesoporous carbon. We employ circular dichroism spectroscopy, isothermal titration calorimetry (ITC), and chronoamperometry in order to demonstrate the chiral nature of the mesoporous carbon. The approach presented in this paper is highly significant for the development of a new type of chiral porous materials for enantioselective chemistry. In addition, it contributes significantly to our understanding of the structure and nature of chiral nanoporous materials and surfaces. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  11. Electrophoresis of a DNA Coil Near a Nanopore

    CERN Document Server

    Rowghanian, Payam

    2013-01-01

    Motivated by DNA electrophoresis near a nanopore, we consider the flow field around an "elongated jet", a long thin source which injects momentum into a liquid. This solution qualitatively describes the electro-osmotic flow around a long rigid polymer, where due to electrohydrodynamic coupling, the solvent receives momentum from the electric field. Based on the qualitative behavior of the elongated jet solution, we develop a coarse-grained scheme which reproduces the known theoretical results regarding the electrophoretic behavior of a long rigid polymer and a polymer coil in a uniform field, which we then exploit to analyze the electrophoresis of a polymer coil in the non-uniform field near a nanopore.

  12. Sequencing of Ebola Virus Genomes Using Nanopore Technology

    Science.gov (United States)

    Hoenen, Thomas

    2017-01-01

    Sequencing of virus genomes during disease outbreaks can provide valuable information for diagnostics, epidemiology, and evaluation of potential countermeasures. However, particularly in remote areas logistical and technical challenges can be significant. Nanopore sequencing provides an alternative to classical Sanger and next-generation sequencing methods, and was successfully used under outbreak conditions (Hoenen et al., 2016; Quick et al., 2016). Here we describe a protocol used for sequencing of Ebola virus under outbreak conditions using Nanopore technology, which we successfully implemented at the CDC/NIH diagnostic laboratory (de Wit et al., 2016) located at the ELWA-3 Ebola virus Treatment Unit in Monrovia, Liberia, during the recent Ebola virus outbreak in West Africa.

  13. Specific Energy Characteristics of Nanoporous Carbon Activated by Orthophosphoric Acid

    Directory of Open Access Journals (Sweden)

    B.I. Rachiy

    2015-12-01

    Full Text Available This paper investigated the effect of the amount of phosphoric acid on the structure nanoporous carbon materials (NCM obtained from raw materials of plant origin. The results voltammetry defined specific capacitance characteristics of NCM and conditions its synthesis with optimal energy parameters established. It is shown that reducing the number of lignin-cellulose materials in precursor volume due to carbonization leads to a decline in specific capacity of NCM approximately 6-20 %.

  14. Rectification properties of conically shaped nanopores: consequences of miniaturization.

    Science.gov (United States)

    Pietschmann, J-F; Wolfram, M-T; Burger, M; Trautmann, C; Nguyen, G; Pevarnik, M; Bayer, V; Siwy, Z

    2013-10-21

    Nanopores attracted a great deal of scientific interest as templates for biological sensors as well as model systems to understand transport phenomena at the nanoscale. The experimental and theoretical analysis of nanopores has been so far focused on understanding the effect of the pore opening diameter on ionic transport. In this article we present systematic studies on the dependence of ion transport properties on the pore length. Particular attention was given to the effect of ion current rectification exhibited in conically shaped nanopores with homogeneous surface charges. We found that reducing the length of conically shaped nanopores significantly lowered their ability to rectify ion current. However, rectification properties of short pores can be enhanced by tailoring the surface charge and the shape of the narrow opening. Furthermore we analyzed the relationship of the rectification behavior and ion selectivity for different pore lengths. All simulations were performed using MsSimPore, a software package for solving the Poisson-Nernst-Planck (PNP) equations. It is based on a novel finite element solver and allows for simulations up to surface charge densities of -2 e per nm(2). MsSimPore is based on 1D reduction of the PNP model, but allows for a direct treatment of the pore with bulk electrolyte reservoirs, a feature which was previously used in higher dimensional models only. MsSimPore includes these reservoirs in the calculations, a property especially important for short pores, where the ionic concentrations and the electric potential vary strongly inside the pore as well as in the regions next to the pore entrance.

  15. Nanoporous titanium surfaces for sustained elution of proteins and antibiotics.

    Directory of Open Access Journals (Sweden)

    Amirhossein Ketabchi

    Full Text Available Current medically relevant metals for prosthetic reconstructions enjoy a relatively good success rate, but their performance drops significantly in patients with compromised health status, and post-surgical infections still remain an important challenge. To address these problems, different nanotechnology-based strategies have been exploited to create implantable metals with an enhanced bioactivity and antibacterial capacities. Among these, oxidative nanopatterning has emerged as a very effective approach to engender nanoporous surfaces that stimulate and guide the activity of adhering cells. The resulting nanoporosity is also attractive because it offers nanoconfined volumes that can be exploited to load bioactive compounds and modulate their release over time. Such extended elution is needed since a single exposure to growth factors and/or antibiotics, for instance, may not be adequate to further sustain bone regeneration and/or to counteract bacterial colonization. In this article, we assessed the capacities of nanoporous titanium surfaces generated by oxidative nanopatterning to provide controlled and sustained elution of proteins and antibiotic molecules. To this end, we have selected bovine serum albumin (BSA and vancomycin to reflect commonly used compounds, and investigated their adsorption and elution by Fourier-transform infrared (FT-IR and ultraviolet-visible (UV-VIS spectroscopy. Our results demonstrate that while the elution of albumin is not significantly affected by the nanoporosity, in the case of vancomycin, nanoporous surfaces provided an extended release. These findings were successively correlated to the establishment of interactions with the surface and physical-entrapment effects exerted by the nanopores, ultimately highlighting their synergistic contribution to the release profiles and thus their importance in the design of nanostructured eluting platforms for applications in medicine.

  16. Nanoscale volcanoes: accretion of matter at ion-sculpted nanopores.

    Science.gov (United States)

    Mitsui, Toshiyuki; Stein, Derek; Kim, Young-Rok; Hoogerheide, David; Golovchenko, J A

    2006-01-27

    We demonstrate the formation of nanoscale volcano-like structures induced by ion-beam irradiation of nanoscale pores in freestanding silicon nitride membranes. Accreted matter is delivered to the volcanoes from micrometer distances along the surface. Volcano formation accompanies nanopore shrinking and depends on geometrical factors and the presence of a conducting layer on the membrane's back surface. We argue that surface electric fields play an important role in accounting for the experimental observations.

  17. Mathematical modeling and simulation of nanopore blocking by precipitation

    KAUST Repository

    Wolfram, M-T

    2010-10-29

    High surface charges of polymer pore walls and applied electric fields can lead to the formation and subsequent dissolution of precipitates in nanopores. These precipitates block the pore, leading to current fluctuations. We present an extended Poisson-Nernst-Planck system which includes chemical reactions of precipitation and dissolution. We discuss the mathematical modeling and present 2D numerical simulations. © 2010 IOP Publishing Ltd.

  18. Nanoporous Carbon Nitride: A High Efficient Filter for Seawater Desalination

    OpenAIRE

    Weifeng LI; Yang, Yanmei; Zhou, Hongcai; Zhang, Xiaoming; Zhao, Mingwen

    2015-01-01

    The low efficiency of commercially-used reverse osmosis (RO) membranes has been the main obstacle in seawater desalination application. Here, we report the auspicious performance, through molecular dynamics simulations, of a seawater desalination filter based on the recently-synthesized graphene-like carbon nitride (g-C2N) [Nat. Commun., 2015, 6, 6486]. Taking advantage of the inherent nanopores and excellent mechanical properties of g-C2N filter, highly efficient seawater desalination can be...

  19. Nanoporous Polymer-Ceramic Composite Electrolytes for Lithium Metal Batteries

    KAUST Repository

    Tu, Zhengyuan

    2013-09-16

    A nanoporous composite material that offers the unique combination of high room-temperature ionic conductivity and high mechanical modulus is reported. When used as the separator/electrolyte in lithium batteries employing metallic lithium as anode, the material displays unprecedented cycling stability and excellent ability to prevent premature cell failure by dendrite-induced short circuits © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  20. Pyrophoric Nanoparticles and Nanoporous Foils for Defense Applications

    Science.gov (United States)

    2008-12-01

    1 PYROPHORIC NANOPARTICLES AND NANOPOROUS FOILS FOR DEFENSE APPLICATIONS Rajesh Shende, Zac Doorenbos, Alok Vats , and Jan Puszynski* South...protection, and temporary pain relief to injured soldiers etc. Pyrophoric nanomaterials are very versatile in this regard, as they can be utilized...metal and method or preparing, US Patent 4895609, January 2, 1990. [13] Shende, R.V., Vats , A., Doorenbos, Z. D., Kapoor, D., Martin, D

  1. Nonreciprocal Radio Frequency Transduction in a Parametric Mechanical Artificial Lattice

    Science.gov (United States)

    Huang, Pu; Zhang, Liang; Zhou, Jingwei; Tian, Tian; Yin, Peiran; Duan, Changkui; Du, Jiangfeng

    2016-07-01

    Generating nonreciprocal radio frequency transduction plays important roles in a wide range of research and applications, and an aspiration is to integrate this functionality into microcircuits without introducing a magnetic field, which, however, remains challenging. By designing a 1D artificial lattice structure with a neighbor interaction engineered parametrically, we predicted a nonreciprocity transduction with a large unidirectionality. We then experimentally demonstrated the phenomenon on a nanoelectromechanical chip fabricated by conventional complementary metal-silicon processing. A unidirectionality with isolation as high as 24 dB is achieved, and several different transduction schemes are realized by programing the control voltage topology. Apart from being used as a radio frequency isolator, the system provides a way to build a practical on-chip programmable device for broad research and applications in the radio frequency domain.

  2. Gene Expression Pattern of Signal Transduction in Chronic Myeloid Leukemia

    Institute of Scientific and Technical Information of China (English)

    LI Huiyu; JIE Shenghua; GUO Tiannan; HUANG Shi'ang

    2006-01-01

    To explore the transcriptional gene expression profiles of signaling pathway in Chronic myeloid leukemia (CML), a series of cDNA microarray chips were tested. The results showed that differentially expressed genes related to singal transduction in CML were screened out and the genes involved in Phosphoinositide 3-kinases (PI3K), Ras-MAPK (mitogen-activated protein kinase) and other signaling pathway genes simultaneously. The results also showed that most of these genes were up-expression genes , which suggested that signal transduction be overactivated in CML. Further analysis of these differentially expressed signal transduction genes will be helpful to understand the molecular mechanism of CML and find new targets of treatment.

  3. Microenvironment Dependent Photobiomodulation on Function-Specific Signal Transduction Pathways

    Directory of Open Access Journals (Sweden)

    Timon Cheng-Yi Liu

    2014-01-01

    Full Text Available Cellular photobiomodulation on a cellular function has been shown to be homeostatic. Its function-specific pathway mechanism would be further discussed in this paper. The signal transduction pathways maintaining a normal function in its function-specific homeostasis (FSH, resisting the activation of many other irrelative signal transduction pathways, are so sparse that it can be supposed that there may be normal function-specific signal transduction pathways (NSPs. A low level laser irradiation or monochromatic light may promote the activation of partially activated NSP and/or its redundant NSP so that it may induce the second-order phase transition of a function from its dysfunctional one far from its FSH to its normal one in a function-specific microenvironment and may also induce the first-order functional phase transition of the normal function from low level to high level.

  4. The development of taste transduction and taste chip technology

    Institute of Scientific and Technical Information of China (English)

    LI Yan; LIU Qingjun; XU Ying; CAI Hua; QIN Lifeng; WANG Lijiang; WANG Ping

    2005-01-01

    The intrinsic perception process of taste is obviously far less known than those of vision, audition, touch and olfaction. Despite that taste cells utilize a variety of sensory mechanisms to translate plenty of gustatory sensations such as sour, sweet, bitter, salty and umami into cellular signals, gustatory perception mechanisms are still under exploration due to the lack of effective methods on cellular and molecular level. Recently the development of molecular biological and electrophysiological studies has promoted exploration of olfactory and gustatory transduction and coding mechanisms dramatically. Based on the studies of artificial olfaction, artificial taste and cell-based biosensor in our laboratory, this paper reviews the current research on taste transduction mechanism. We introduce the recent advances in cell chip that combined biology with microelectronics, discuss taste cell chip as well as its potential of prospective application in taste transduction mechanism in detail and propose the research trends of taste chip in future.

  5. Phosphoinositide pathway and the signal transduction network in neural development

    Institute of Scientific and Technical Information of China (English)

    Vincenza Rita Lo Vasco

    2012-01-01

    The development of the nervous system is under the strict control of a number of signal transduction pathways,often interconnected.Among them,the phosphoinositide (PI) pathway and the related phospholipase C (PI-PLC) family of enzymes have been attracting much attention.Besides their well-known role in the regulation of intracellular calcium levels,PI-PLC enzymes interact with a number of molecules belonging to further signal transduction pathways,contributing to a specific and complex network in the developing nervous system.In this review,the connections of PI signalling with further transduction pathways acting during neural development are discussed,with special regard to the role of the PI-PLC family of enzymes.

  6. Cell cycle and cell signal transduction in marine phytoplankton

    Institute of Scientific and Technical Information of China (English)

    LIU Jingwen; JIAO Nianzhi; CAI Huinong

    2006-01-01

    As unicellular phytoplankton, the growth of a marine phytoplankton population results directly from the completion of a cell cycle, therefore, cell-environment communication is an important way which involves signal transduction pathways to regulate cell cycle progression and contribute to growth, metabolism and primary production and respond to their surrounding environment in marine phytoplankton. Cyclin-CDK and CaM/Ca2+ are essentially key regulators in control of cell cycle and signal transduction pathway, which has important values on both basic research and applied biotechnology. This paper reviews progress made in this research field, which involves the identification and characterization of cyclins and cell signal transduction system, cell cycle control mechanisms in marine phytoplankton cells, cell cycle proteins as a marker of a terminal event to estimate the growth rate of phytoplankton at the species level, cell cycle-dependent toxin production of toxic algae and cell cycle progression regulated by environmental factors.

  7. Protein interactions with nanoporous sol-gel derived bioactive glasses.

    Science.gov (United States)

    Lin, Sen; Van den Bergh, Wouter; Baker, Simon; Jones, Julian R

    2011-10-01

    Sol-gel derived bioactive glasses are excellent candidates for bone regenerative implant materials as they bond with bone, stimulate bone growth and degrade in the body. Their interactions with proteins are critical to understanding their performance after implantation. This study focuses on the interactions between fibrinogen and sol-gel glass particles of the 70S30C (70 mol.% SiO(2), 30 mol.% CaO composition). Sol-gel silica and melt-derived Bioglass® were also used for comparison. Fibrinogen penetration into the nanoporous glasses was observed by live tracking the fluorescent-labelled fibrinogen with confocal microscopy. The effect of pore size on protein penetration was investigated. Nanoporous networks with modal pore diameters larger than 6 nm were accessible to fibrinogen. When the modal nanopore diameter was decreased to 2 nm or less, the penetration of fibrinogen was inhibited. The surface properties of the glasses, which can be modulated by media pH, glass composition and final stabilisation temperature in the sol-gel process, have effects on fibrinogen adsorption via long-range Coulombic forces before the adsorption and via short-range interactions such as hydrogen bonding after the adsorption.

  8. Genomic Pathogen Typing Using Solid-State Nanopores.

    Directory of Open Access Journals (Sweden)

    Allison H Squires

    Full Text Available In clinical settings, rapid and accurate characterization of pathogens is essential for effective treatment of patients; however, subtle genetic changes in pathogens which elude traditional phenotypic typing may confer dangerous pathogenic properties such as toxicity, antibiotic resistance, or virulence. Existing options for molecular typing techniques characterize the critical genomic changes that distinguish harmful and benign strains, yet the well-established approaches, in particular those that rely on electrophoretic separation of nucleic acid fragments on a gel, have room for only incremental future improvements in speed, cost, and complexity. Solid-state nanopores are an emerging class of single-molecule sensors that can electrophoretically characterize charged biopolymers, and which offer significant advantages in terms of sample and reagent requirements, readout speed, parallelization, and automation. We present here the first application of nanopores for single-molecule molecular typing using length based "fingerprints" of critical sites in bacterial genomes. This technique is highly adaptable for detection of different types of genetic variation; as we illustrate using prototypical examples including Mycobacterium tuberculosis and methicillin-resistant Streptococcus aureus, the solid-state nanopore diagnostic platform may be used to detect large insertions or deletions, small insertions or deletions, and even single-nucleotide variations in bacterial DNA. We further show that Bayesian classification of test samples can provide highly confident pathogen typing results based on only a few tens of independent single-molecule events, making this method extremely sensitive and statistically robust.

  9. Mechanical behavior of intragranular, nano-porous electrodeposited zinc oxide

    Energy Technology Data Exchange (ETDEWEB)

    Raghavan, Rejin, E-mail: r.raghavan@mpie.de [Empa, Swiss Federal Laboratories for Materials Science and Technology, Laboratory for Mechanics of Materials and Nanostructures, Feuerwerkstrasse 39, 3602 Thun (Switzerland); Elias, Jamil [Empa, Swiss Federal Laboratories for Materials Science and Technology, Laboratory for Mechanics of Materials and Nanostructures, Feuerwerkstrasse 39, 3602 Thun (Switzerland); Erni, Rolf; Parlinska, Magdalena [Empa, Swiss Federal Laboratories for Materials Science and Technology, Electron Microscopy Center, Ueberlandstrasse 129, 8600 Duebendorf (Switzerland); Philippe, Laetitia; Michler, Johann [Empa, Swiss Federal Laboratories for Materials Science and Technology, Laboratory for Mechanics of Materials and Nanostructures, Feuerwerkstrasse 39, 3602 Thun (Switzerland)

    2015-03-02

    The mechanical properties and deformation mechanisms of nano-porous ZnO thin films electrodeposited on glass substrates were determined by nanoindentation and in situ scanning electron microscope (SEM) micropillar compression. The intragranular nature of the nanoscale porosity within the individual mono-crystals of the films was probed at nano- and micro-scales for determining their mechanical response. The hardness (3.5 GPa) and reduced elastic modulus (65 GPa) of the compact thin film were found to decrease by increasing the intragranular porosity controlled by the electrochemical deposition potential of ZnO. Focused ion beam (FIB) cross-sections of residual imprints reveal that the decrease in hardness and elastic modulus observed is primarily due to compaction of the nano-porous structure. In situ SEM compression of FIB machined micropillars reveals brittle fracture and near theoretical strengths in the compact film (~ 2 GPa), and a higher flaw tolerant response despite lower failure stress in the most porous film. - Highlights: • Micromechanical behavior of intragranular, nanoporous electrodeposited ZnO thin films • Densification by closure of porosity during indentation • Resistance to fracture by crack deflection and blunting in porous films during microcompression.

  10. Monitoring tetracycline through a solid-state nanopore sensor

    Science.gov (United States)

    Zhang, Yuechuan; Chen, Yanling; Fu, Yongqi; Ying, Cuifeng; Feng, Yanxiao; Huang, Qimeng; Wang, Chao; Pei, De-Sheng; Wang, Deqiang

    2016-06-01

    Antibiotics as emerging environmental contaminants, are widely used in both human and veterinary medicines. A solid-state nanopore sensing method is reported in this article to detect Tetracycline, which is based on Tet-off and Tet-on systems. rtTA (reverse tetracycline-controlled trans-activator) and TRE (Tetracycline Responsive Element) could bind each other under the action of Tetracycline to form one complex. When the complex passes through nanopores with 8 ~ 9 nanometers in diameter, we could detect the concentrations of Tet from 2 ng/mL to 2000 ng/mL. According to the Logistic model, we could define three growth zones of Tetracycline for rtTA and TRE. The slow growth zone is 0-39.5 ng/mL. The rapid growth zone is 39.5-529.7 ng/mL. The saturated zone is > 529.7 ng/mL. Compared to the previous methods, the nanopore sensor could detect and quantify these different kinds of molecule at the single-molecule level.

  11. Surface modification of graphene nanopores for protein translocation

    Science.gov (United States)

    Shan, Y. P.; Tiwari, P. B.; Krishnakumar, P.; Vlassiouk, I.; Li, W.Z.; Wang, X.W.; Darici, Y.; Lindsay, S.M.; Wang, H. D.; Smirnov, S.; He, J.

    2014-01-01

    Studies of DNA translocation through graphene nanopores have revealed their potential for DNA sequencing. Here we report a study of protein translocation through chemically modified graphene nanopores. A transmission electron microscope (TEM) was used to cut nanopores with diameters between 5-20 nm in multilayer graphene prepared by chemical vapor deposition (CVD). After oxygen plasma treatment, the dependence of the measured ionic current on salt concentration and pH was consistent with a small surface charge induced by the formation of carboxyl groups. While translocation of gold nanoparticles (10 nm) was readily detected through such treated pores of a larger diameter, translocation of protein ferritin was not observed either for oxygen plasma treated pores, or for pores modified with mercaptohexadecanoic acid. Ferritin translocation events were reliably observed after the pores were modified with the phospholipid-PEG (DPPE-PEG750) amphiphile. The ion current signature of translocation events was complex, suggesting that a series of interactions between the protein and pore occur during the process. PMID:24231385

  12. Influence of concentration polarization on DNA translocation through a nanopore

    Science.gov (United States)

    Zhai, Shengjie; Zhao, Hui

    2016-05-01

    Concentration polarization can be induced by the unique ion-perm selectivity of small nanopores, leading to a salt concentration gradient across nanopores. This concentration gradient can create diffusio-osmosis and induce an electric field, affecting ionic currents on DNA that translocates through a nanopore. Here this influence is theoretically investigated by solving the continuum Poisson-Nernst-Planck model for different salt concentrations, DNA surface charge densities, and pore properties. By implementing the perturbation method, we can explicitly compute the contribution of concentration polarization to the ionic current. The induced electric field by concentration polarization is opposite to the imposed electric field and decreases the migration current, and the induced diffusio-osmosis can decrease the convection current as well. Our studies suggest that the importance of the concentration polarization can be determined by the parameter λ /G where λ is the double-layer thickness and G is the gap size. When λ /G is larger than a critical value, the influence of concentration polarization becomes more prominent. This conclusion is supported by the studies on the dependence of the ionic current on salt concentration and pore properties, showing that the difference between two models with and without accounting for concentration polarization is larger for low salts and small pores, which correspond to larger λ /G .

  13. Oxford Nanopore MinION Sequencing and Genome Assembly

    Institute of Scientific and Technical Information of China (English)

    Hengyun Lu; Francesca Giordano; Zemin Ning

    2016-01-01

    The revolution of genome sequencing is continuing after the successful second-generation sequencing (SGS) technology. The third-generation sequencing (TGS) technology, led by Pacific Biosciences (PacBio), is progressing rapidly, moving from a technology once only capable of providing data for small genome analysis, or for performing targeted screening, to one that pro-mises high quality de novo assembly and structural variation detection for human-sized genomes. In 2014, the MinION, the first commercial sequencer using nanopore technology, was released by Oxford Nanopore Technologies (ONT). MinION identifies DNA bases by measuring the changes in electrical conductivity generated as DNA strands pass through a biological pore. Its portability, affordability, and speed in data production makes it suitable for real-time applications, the release of the long read sequencer MinION has thus generated much excitement and interest in the geno-mics community. While de novo genome assemblies can be cheaply produced from SGS data, assem-bly continuity is often relatively poor, due to the limited ability of short reads to handle long repeats. Assembly quality can be greatly improved by using TGS long reads, since repetitive regions can be easily expanded into using longer sequencing lengths, despite having higher error rates at the base level. The potential of nanopore sequencing has been demonstrated by various studies in gen-ome surveillance at locations where rapid and reliable sequencing is needed, but where resources are limited.

  14. Confined Nystatin Polyenes in Nanopore Induce Biologic Ionic Selectivity

    Directory of Open Access Journals (Sweden)

    Khaoula Boukari

    2016-01-01

    Full Text Available Antifungal polyenes such as nystatin (or amphotericin B molecules play an important role in regulating ions permeability through membrane cell. The creation of self-assembled nanopores into the fungal lipid membranes permits the leakage and the selectivity of ions (i.e., blockage of divalent cations that cause the cell death. These abilities are thus of first interest to promote new biomimetic membranes with improved ionic properties. In the present work, we will use molecular dynamic simulations to interpret recent experimental data that showed the transfer of the nystatin action inside artificial nanopore in terms of ion permeability and selectivity. We will demonstrate that nystatin polyenes can be stabilized in a hydrophobic carbon nanotube, even at high concentration. The high potential interaction between the polyenes and the hydrophobic pore wall ensures the apparition of a hole inside the biomimetic nanopore that changes its intrinsic properties. The probability ratios of cation versus anion show interesting reproducibility of experimental measurements and, to a certain extent, opened the way for transferring biological properties in synthetic membranes.

  15. Antibody immobilization on a nanoporous aluminum surface for immunosensor development

    Science.gov (United States)

    Chai, Changhoon; Lee, Jooyoung; Park, Jiyong; Takhistov, Paul

    2012-12-01

    A method of antibody (Ab) immobilization on a nanoporous aluminum surface for an electrochemical immunosensor is presented. To achieve good attachment and stability of Ab on an aluminum surface, aluminum was silanized with 3-aminopropyltryethoxysilane (APTES), and then covalently cross-linked to self-assembled layers (SALs) of APTES. Both the APTES concentration and the silanization time affected the formation of APTES-SALs as Ab immobilization. The formation of APTES-SALs was confirmed using the water contact angle on the APTES-SALs surface. The reactivity of APTES-SALs with Ab was investigated by measuring the fluorescence intensity of fluorescein isothiocyanate-labeled Ab-immobilized on the aluminum surface. Silanization of aluminum in 2% APTES for 4 h resulted in higher water contact angles and greater amounts of immobilized Ab than other APTES concentrations or silanization times. More Ab was immobilized on the nanoporous surface than on a planar aluminum surface. Electrochemical immunosensors developed on the nanoporous aluminum via the Ab immobilization method established in this study responded functionally to the antigen concentration in the diagnostic solution.

  16. Short infrared (IR) laser pulses can induce nanoporation

    Science.gov (United States)

    Roth, Caleb C.; Barnes, Ronald A.; Ibey, Bennett L.; Glickman, Randolph D.; Beier, Hope T.

    2016-03-01

    Short infrared (IR) laser pulses on the order of hundreds of microseconds to single milliseconds with typical wavelengths of 1800-2100 nm, have shown the capability to reversibly stimulate action potentials (AP) in neuronal cells. While the IR stimulation technique has proven successful for several applications, the exact mechanism(s) underlying the AP generation has remained elusive. To better understand how IR pulses cause AP stimulation, we determined the threshold for the formation of nanopores in the plasma membrane. Using a surrogate calcium ion, thallium, which is roughly the same shape and charge, but lacks the biological functionality of calcium, we recorded the flow of thallium ions into an exposed cell in the presence of a battery of channel antagonists. The entry of thallium into the cell indicated that the ions entered via nanopores. The data presented here demonstrate a basic understanding of the fundamental effects of IR stimulation and speculates that nanopores, formed in response to the IR exposure, play an upstream role in the generation of AP.

  17. Nanoporous ultra-high specific surface inorganic fibres

    Science.gov (United States)

    Kanehata, Masaki; Ding, Bin; Shiratori, Seimei

    2007-08-01

    Nanoporous inorganic (silica) nanofibres with ultra-high specific surface have been fabricated by electrospinning the blend solutions of poly(vinyl alcohol) (PVA) and colloidal silica nanoparticles, followed by selective removal of the PVA component. The configurations of the composite and inorganic nanofibres were investigated by changing the average silica particle diameters and the concentrations of colloidal silica particles in polymer solutions. After the removal of PVA by calcination, the fibre shape of pure silica particle assembly was maintained. The nanoporous silica fibres were assembled as a porous membrane with a high surface roughness. From the results of Brunauer-Emmett-Teller (BET) measurements, the BET surface area of inorganic silica nanofibrous membranes was increased with the decrease of the particle diameters. The membrane composed of silica particles with diameters of 15 nm showed the largest BET surface area of 270.3 m2 g-1 and total pore volume of 0.66 cm3 g-1. The physical absorption of methylene blue dye molecules by nanoporous silica membranes was examined using UV-vis spectrometry. Additionally, the porous silica membranes modified with fluoroalkylsilane showed super-hydrophobicity due to their porous structures.

  18. Nanoporous ultra-high specific surface inorganic fibres

    Energy Technology Data Exchange (ETDEWEB)

    Kanehata, Masaki [Faculty of Science and Technology, Keio University, Yokohama 223-8522 (Japan); Ding Bin [Fiber and Polymer Science, University of California, Davis, CA 95616 (United States); Shiratori, Seimei [Faculty of Science and Technology, Keio University, Yokohama 223-8522 (Japan)

    2007-08-08

    Nanoporous inorganic (silica) nanofibres with ultra-high specific surface have been fabricated by electrospinning the blend solutions of poly(vinyl alcohol) (PVA) and colloidal silica nanoparticles, followed by selective removal of the PVA component. The configurations of the composite and inorganic nanofibres were investigated by changing the average silica particle diameters and the concentrations of colloidal silica particles in polymer solutions. After the removal of PVA by calcination, the fibre shape of pure silica particle assembly was maintained. The nanoporous silica fibres were assembled as a porous membrane with a high surface roughness. From the results of Brunauer-Emmett-Teller (BET) measurements, the BET surface area of inorganic silica nanofibrous membranes was increased with the decrease of the particle diameters. The membrane composed of silica particles with diameters of 15 nm showed the largest BET surface area of 270.3 m{sup 2} g{sup -1} and total pore volume of 0.66 cm{sup 3} g{sup -1}. The physical absorption of methylene blue dye molecules by nanoporous silica membranes was examined using UV-vis spectrometry. Additionally, the porous silica membranes modified with fluoroalkylsilane showed super-hydrophobicity due to their porous structures.

  19. Modeling of 1D Anomalous Diffusion in Fractured Nanoporous Media

    Directory of Open Access Journals (Sweden)

    Albinali Ali

    2016-07-01

    Full Text Available Fractured nanoporous reservoirs include multi-scale and discontinuous fractures coupled with a complex nanoporous matrix. Such systems cannot be described by the conventional dual-porosity (or multi-porosity idealizations due to the presence of different flow mechanisms at multiple scales. More detailed modeling approaches, such as Discrete Fracture Network (DFN models, similarly suffer from the extensive data requirements dictated by the intricacy of the flow scales, which eventually deter the utility of these models. This paper discusses the utility and construction of 1D analytical and numerical anomalous diffusion models for heterogeneous, nanoporous media, which is commonly encountered in oil and gas production from tight, unconventional reservoirs with fractured horizontal wells. A fractional form of Darcy’s law, which incorporates the non-local and hereditary nature of flow, is coupled with the classical mass conservation equation to derive a fractional diffusion equation in space and time. Results show excellent agreement with established solutions under asymptotic conditions and are consistent with the physical intuitions.

  20. Combining a sensor and a pH-gated nanopore based on an avidin-biotin system.

    Science.gov (United States)

    Lepoitevin, Mathilde; Nguyen, Gael; Bechelany, Mikhael; Balanzat, Emmanuel; Janot, Jean-Marc; Balme, Sebastien

    2015-04-01

    Here we propose a new approach to tailor nanopores, which combines both pH gating and sensing properties. This strategy is based on PEG like-avidin grafting in nanopores designed by atomic layer deposition (ALD). Below pH 5 the nanopore is blocked. We show that the PEG chains are at the origin of these properties.

  1. Expression of SMAD signal transduction molecules in the pancreas

    DEFF Research Database (Denmark)

    Brorson, Michael; Hougaard, D.; Nielsen, Jens Høiriis

    2001-01-01

    Members of the TGF-beta superfamily of cytokines have been implicated in pancreatic cancer, pancreatitis and in regulation and differentiation of pancreatic endocrine and exocrine cells. Different TGF-beta members signal through phosphorylation of different signal transduction proteins, which eve...... is known to transduce signals from receptors binding bone morphogenetic protein (BMP) these results indicate a previously unknown role of BMP-like ligands in islet function.......Members of the TGF-beta superfamily of cytokines have been implicated in pancreatic cancer, pancreatitis and in regulation and differentiation of pancreatic endocrine and exocrine cells. Different TGF-beta members signal through phosphorylation of different signal transduction proteins, which...

  2. On the Monadic Second-Order Transduction Hierarchy

    CERN Document Server

    Blumensath, Achim

    2010-01-01

    We compare classes of finite relational structures via monadic second-order transductions. More precisely, we study the preorder C <= K :iff C is a subset of tau(K) for some transduction tau. If we only consider classes of incidence structures we can completely describe the resulting hierarchy. It is linear of order type omega + 3. Each level can be characterised in terms of a suitable variant of tree-width. Canonical representatives of the various levels are: the class of all trees of height n, for each n in N, of all paths, of all trees, and of all grids.

  3. One-component systems dominate signal transduction in prokaryotes

    Science.gov (United States)

    Ulrich, Luke E.; Koonin, Eugene V.; Zhulin, Igor B.

    2009-01-01

    Two-component systems that link environmental signals to cellular responses are viewed as the primary mode of signal transduction in prokaryotes. By analyz-ing information encoded by 145 prokaryotic genomes, we found that the majority of signal transduction systems consist of a single protein that contains input and output domains but lacks phosphotransfer domains typical of two-component systems. One-component systems are evolutionarily older, more widely distributed among bacteria and archaea, and display a greater diversity of domains than two-component systems. PMID:15680762

  4. Fracture and fatigue of ultrathin nanoporous polymer films

    Science.gov (United States)

    Kearney, Andrew V.

    Nanoporous polymer layers are being considered for a range of emerging nanoscale applications, from low permittivity materials for interlayer dielectrics in microelectronics and anti-reflective coatings in optical technologies, to biosensors and size-selective membranes for biological applications. Polymer thin films have inherently low elastic modulus, strength and hardness, but exhibit fracture properties that are higher than those reported for glass, ceramic, and even some metal layers. However, constraint of a ductile polymer between two elastic layers is expected to affect the local plasticity ahead of a crack tip and its contribution to the film adhesion with films below a micron in thickness. Additionally, nanoporosity would be expected to have a deleterious effect on mechanical properties, producing materials and layers that are structurally weaker than fully dense versions they replace. Therefore, the integration of these nanoporous polymer layer at nanometer thicknesses would present significantly processing and mechanical reliability challenges. In this dissertation, surprising evidence is presented that nanoporous polymer films exhibit increasing fracture energy with increasing porosity. Such behavior is in stark contrast to a wide range of reported behavior for porous solids. A ductile nano-void growth and coalescence fracture mechanics-based model is presented to rationalize the increase in fracture toughness of the voided polymer film. The model is shown to explain the behavior in terms of a specific scaling of the size of the pores with pore volume fraction. It is demonstrated that the pore size must increase with close to a linear dependence on the volume fraction in order to increase rather than decrease the fracture energy. Independent characterization of the pore size as a function of volume fraction is shown to confirm predictions made by the model. The fracture behavior of these constrained polymer films are also examined with film thickness

  5. Molecular simulation of nitrogen adsorption in nanoporous silica.

    Science.gov (United States)

    Coasne, B; Galarneau, A; Di Renzo, F; Pellenq, R J M

    2010-07-06

    This article reports on a molecular simulation study of nitrogen adsorption and condensation at 77 K in atomistic silica cylindrical nanopores (MCM-41). Two models are considered for the nitrogen molecule and its interaction with the silica substrate. In the "pea" model, the nitrogen molecule is described as a single Lennard-Jones sphere and only Lennard-Jones interactions between the nitrogen molecule and the oxygens atoms of the silica substrate are taken into account. In the "bean" model (TraPPE force field), the nitrogen molecule is composed of two Lennard-Jones sites and a linear array of three charges on the atomic positions and at the center of the nitrogen-nitrogen bond. In the bean model, the interactions between the sites on the nitrogen molecule and the Si, O, and H atoms of the substrate are the sum of the Coulombic and dispersion interactions with a repulsive short-range contribution. The data obtained with the pea and bean models in silica nanopores conform to the typical behavior observed in the experiments for adsorption/condensation in cylindrical MCM-41 nanopores; the adsorbed amount increases continuously in the multilayer adsorption regime until an irreversible jump occurs because of capillary condensation and evaporation of the fluid within the pore. Our results suggest that the pea model can be used for characterization purposes where one is interested in capturing the global experimental behavior upon adsorption and desorption in silica nanopores. However, the bean model is more suitable to investigating the details of the interaction with the surface because this model, which accounts for the partial charges located on the nitrogen atoms of the molecule (quadrupole), allows a description of the specific interactions between this adsorbate and silica surfaces (silanol groups and siloxane bridges) or grafted silica surfaces. In particular, the bean model provides a more realistic picture of nitrogen adsorption in the vicinity of silica

  6. Sodium Dodecyl Sulfate (SDS)-Loaded Nanoporous Polymer as Anti-Biofilm Surface Coating Material

    DEFF Research Database (Denmark)

    Li, Li; Molin, Søren; Yang, Liang

    2013-01-01

    -b-polydimethylsiloxane (1,2-PB-b-PDMS) block copolymer via chemical cross-linking of the 1,2-PB block followed by quantitative removal of the PDMS block. Sodium dodecyl sulfate (SDS) was loaded into the nanoporous 1,2-PB from aqueous solution. The SDS-loaded nanoporous polymer films were shown to block bacterial attachment...

  7. Large apparent electric size of solid-state nanopores due to spatially extended surface conduction.

    Science.gov (United States)

    Lee, Choongyeop; Joly, Laurent; Siria, Alessandro; Biance, Anne-Laure; Fulcrand, Rémy; Bocquet, Lydéric

    2012-08-08

    Ion transport through nanopores drilled in thin membranes is central to numerous applications, including biosensing and ion selective membranes. This paper reports experiments, numerical calculations, and theoretical predictions demonstrating an unexpectedly large ionic conduction in solid-state nanopores, taking its origin in anomalous entrance effects. In contrast to naive expectations based on analogies with electric circuits, the surface conductance inside the nanopore is shown to perturb the three-dimensional electric current streamlines far outside the nanopore in order to meet charge conservation at the pore entrance. This unexpected contribution to the ionic conductance can be interpreted in terms of an apparent electric size of the solid-state nanopore, which is much larger than its geometric counterpart whenever the number of charges carried by the nanopore surface exceeds its bulk counterpart. This apparent electric size, which can reach hundreds of nanometers, can have a major impact on the electrical detection of translocation events through nanopores, as well as for ionic transport in biological nanopores.

  8. Carbon nanotube-based coatings to induce flow enhancement in hydrophilic nanopores

    DEFF Research Database (Denmark)

    Wagemann, Enrique; Walther, Jens Honore; Zambrano, Harvey

    2016-01-01

    that carbon nanotubes (CNTs) feature ultrafast waterflow rates which result in flow enhancements of 1 to 5 orders of magnitude compared to Hagen-Poiseuille predictions. In the present study, CNT-based coatings are considered to induce water flow enhancement in silica nanopores with different radius. We......-walled carbon nanotubes implemented as coating material in silica nanopores....

  9. Tuning the size and properties of ClyA nanopores assisted by directed evolution

    NARCIS (Netherlands)

    Soskine, Mikhael; Biesemans, Annemie; De Maeyer, Marc; Maglia, Giovanni

    2013-01-01

    Nanopores have recently emerged as powerful tools in single-molecule investigations. Biological nanopores, however, have drawbacks, including a fixed size and limited stability in lipid bilayers. Inspired by the great success of directed evolution approaches in tailoring enzyme properties, in this w

  10. The mechanism of mechanical energy accumulation in a nonwetting liquid-nanoporous solid system

    NARCIS (Netherlands)

    Borman, VD; Belogorlov, AA; Grekhov, AM; Lisichkin, GV; Tronin, VN; Troyan, [No Value

    2004-01-01

    The mechanism of mechanical energy accumulation in a nanoporous solid-nonwetting liquid system has been experimentally studied by filling a silica gel based nanoporous sorbent (Libersorb 2U-8) with an aqueous ethylene glycol solution. Interpretation of the experimental data within the framework of t

  11. DNA stretching and optimization of nucleobase recognition in enzymatic nanopore sequencing

    NARCIS (Netherlands)

    Stoddart, David; Franceschini, Lorenzo; Heron, Andrew; Bayley, Hagan; Maglia, Giovanni

    2015-01-01

    In nanopore sequencing, where single DNA strands are electrophoretically translocated through a nanopore and the resulting ionic signal is used to identify the four DNA bases, an enzyme has been used to ratchet the nucleic acid stepwise through the pore at a controlled speed. In this work, we invest

  12. Differentiation of Short Single-Stranded DNA Homopolymers in Solid-State Nanopores

    Science.gov (United States)

    Venta, Kimberly; Shemer, Gabriel; Puster, Matthew; Rodríguez-Manzo, Julio A.; Balan, Adrian; Rosenstein, Jacob K.; Shepard, Ken; Drndić, Marija

    2013-01-01

    In the last two decades, new techniques that monitor ionic current modulations as single molecules pass through a nanoscale pore have enabled numerous single-molecule studies. While biological nanopores have recently shown the ability to resolve single nucleotides within individual DNA molecules, similar developments with solid-state nanopores have lagged, due to challenges both in fabricating stable nanopores of similar dimensions as biological nanopores and in achieving sufficiently low-noise and high-bandwidth recordings. Here we show that small silicon nitride nanopores (0.8 to 2-nm-diameter in 5 to 8-nm-thick membranes) can resolve differences between ionic current signals produced by short (30 base) ssDNA homopolymers (poly(dA), poly(dC), poly(dT)), when combined with measurement electronics that allow a signal-to-noise ratio of better than 10 to be achieved at 1 MHz bandwidth. While identifying intramolecular DNA sequences with silicon nitride nanopores will require further improvements in nanopore sensitivity and noise levels, homopolymer differentiation represents an important milestone in the development of solid-state nanopores. PMID:23621759

  13. Electrokinetic transport of nanoparticles to opening of nanopores on cell membrane during electroporation

    Energy Technology Data Exchange (ETDEWEB)

    Movahed, Saeid [University of Toronto, Department of Chemistry (Canada); Li Dongqing, E-mail: dongqing@mme.uwaterloo.ca [University of Waterloo, Department of Mechanical and Mechatronics Engineering (Canada)

    2013-04-15

    Nanoparticle transport to the opening of the single nanopore created on the cell membrane during the electroporation is studied. First, the permeabilization of a single cell located in a microchannel is investigated. When the nanopores are created, the transport of the nanoparticles from the surrounding liquid to the opening of one of the created nanopores is examined. It was found that the negatively charged nanoparticles preferably move into the nanopores from the side of the cell membrane that faces the negative electrode. Opposite to the electro-osmotic flow effect, the electrophoretic force tends to draw the negatively charged nanoparticles into the opening of the nanopores. The effect of the Brownian force is negligible in comparison with the electro-osmosis and the electrophoresis. Smaller nanoparticles with stronger surface charge transport more easily to the opening of the nanopores. Positively charged nanoparticles preferably enter the nanopores from the side of the cell membrane that faces the positive electrode. On this side, both the electrophoretic and the electro-osmotic forces are in the same directions and contribute to bring the positively charged particles into the nanopores.

  14. Electrochemical detection of single molecules using abiotic nanopores having electrically tunable dimensions

    Science.gov (United States)

    Sansinena, Jose-Maria; Redondo, Antonio; Olazabal, Virginia; Hoffbauer, Mark A.; Akhadov, Elshan A.

    2009-12-29

    A barrier structure for use in an electrochemical stochastic membrane sensor for single molecule detection. The sensor is based upon inorganic nanopores having electrically tunable dimensions. The inorganic nanopores are formed from inorganic materials and an electrically conductive polymer. Methods of making the barrier structure and sensing single molecules using the barrier structure are also described.

  15. Nanoporous materials for reducing the over potential of creating hydrogen by water electrolysis

    Science.gov (United States)

    Anderson, Marc A.; Leonard, Kevin C.

    2016-06-14

    Disclosed is an electrolyzer including an electrode including a nanoporous oxide-coated conducting material. Also disclosed is a method of producing a gas through electrolysis by contacting an aqueous solution with an electrode connected to an electrical power source, wherein the electrode includes a nanoporous oxide-coated conducting material.

  16. Formation of nanopores in a SiN/SiO2 membrane with an electron beam

    NARCIS (Netherlands)

    Wu, M.Y.; Krapf, D.; Zandbergen, M.; Zandbergen, H.; Batson, P.E.

    2005-01-01

    An electron beam can drill nanopores in SiO2 or silicon nitride membranes and shrink a pore to a smaller diameter. Such nanopores are promising for single molecule detection. The pore formation in a 40 nm thick silicon nitride∕SiO2 bilayer using an electron beam with a diameter of 8 nm (full width o

  17. Where bio meets nano: The many uses for nanoporous aluminium oxide in biotechnology

    NARCIS (Netherlands)

    Ingham, C.J.; Maat, ter J.; Vos, de W.M.

    2012-01-01

    Porous aluminum oxide (PAO) is a ceramic formed by an anodization process of pure aluminum that enables the controllable assembly of exceptionally dense and regular nanopores in a planar membrane. As a consequence, PAO has a high porosity, nanopores with high aspect ratio, biocompatibility and the p

  18. Physically-synthesized gold nanoparticles containing multiple nanopores for enhanced photothermal conversion and photoacoustic imaging.

    Science.gov (United States)

    Park, Jisoo; Kang, Heesung; Kim, Young Heon; Lee, Sang-Won; Lee, Tae Geol; Wi, Jung-Sub

    2016-08-25

    Physically-synthesized gold nanoparticles having a narrow size distribution and containing multiple nanopores have been utilized as photothermal converters and imaging contrast agents. Nanopores within the gold nanoparticles make it possible to increase the light-absorption cross-section and consequently exhibit distinct improvements in photothermal conversion and photoacoustic imaging efficiencies.

  19. Electrochemical detection of single molecules using abiotic nanopores having electrically tunable dimensions

    Energy Technology Data Exchange (ETDEWEB)

    Sansinena, Jose-Maria; Redondo, Antonio; Olazabal, Virginia; Hoffbauer, Mark A.

    2017-09-12

    A barrier structure for use in an electrochemical stochastic membrane sensor for single molecule detection. The sensor is based upon inorganic nanopores having electrically tunable dimensions. The inorganic nanopores are formed from inorganic materials and an electrically conductive polymer. Methods of making the barrier structure and sensing single molecules using the barrier structure are also described.

  20. Electrochemical detection of single molecules using abiotic nanopores having electrically tunable dimensions

    Energy Technology Data Exchange (ETDEWEB)

    Sansinena, Jose-Maria; Redondo, Antonio; Olazabal, Virginia; Hoffbauer, Mark A.; Akhadov, Elshan A.

    2017-07-18

    A barrier structure for use in an electrochemical stochastic membrane sensor for single molecule detection. The sensor is based upon inorganic nanopores having electrically tunable dimensions. The inorganic nanopores are formed from inorganic materials and an electrically conductive polymer. Methods of making the barrier structure and sensing single molecules using the barrier structure are also described.

  1. Influence of a nanoporous zirconia implant surface of on cell viability of human osteoblasts

    NARCIS (Netherlands)

    Aboushelib, M.N.; Osman, E.; Jansen, I.; Everts, V.; Feilzer, A.J.

    2013-01-01

    Purpose: The dense nonretentive surface of zirconia implants was modified into a nanoporous surface using selective infiltration etching surface treatment. The aim of this study was to investigate the influence of such a nanoporous modified zirconia surface on the attachment of human osteoblasts.

  2. Ion selection of charge-modified large nanopores in a graphene sheet

    Science.gov (United States)

    Zhao, Shijun; Xue, Jianming; Kang, Wei

    2013-09-01

    Water desalination becomes an increasingly important approach for clean water supply to meet the rapidly growing demand of population boost, industrialization, and urbanization. The main challenge in current desalination technologies lies in the reduction of energy consumption and economic costs. Here, we propose to use charged nanopores drilled in a graphene sheet as ion exchange membranes to promote the efficiency and capacity of desalination systems. Using molecular dynamics simulations, we investigate the selective ion transport behavior of electric-field-driven KCl electrolyte solution through charge modified graphene nanopores. Our results reveal that the presence of negative charges at the edge of graphene nanopore can remarkably impede the passage of Cl- while enhance the transport of K+, which is an indication of ion selectivity for electrolytes. We further demonstrate that this selectivity is dependent on the pore size and total charge number assigned at the nanopore edge. By adjusting the nanopore diameter and electric charge on the graphene nanopore, a nearly complete rejection of Cl- can be realized. The electrical resistance of nanoporous graphene, which is a key parameter to evaluate the performance of ion exchange membranes, is found two orders of magnitude lower than commercially used membranes. Our results thus suggest that graphene nanopores are promising candidates to be used in electrodialysis technology for water desalinations with a high permselectivity.

  3. Nanoporous carbon sorbent for molecular-sieve chromatography of lipoprotein complex

    Science.gov (United States)

    Kerimkulova, A. R.; Mansurova, B. B.; Gil'manov, M. K.; Mansurov, Z. A.

    2012-06-01

    The physicochemical characteristics of carbon sorbents are investigated. Electron microscopy data for the sorbent and separated lipoprotein complex are presented. It is found that the obtained carbon sorbent possess high porosity. Nanoporous carbon sorbents for the chromatography of molecular-sieve markers are obtained and tested. The applicability of nanoporous carbon sorbents for separation of lipoprotein complexes (LPC) is investigated.

  4. Effects of electrons on the shape of nanopores prepared by focused electron beam induced etching

    Science.gov (United States)

    Liebes, Yael; Hadad, Binyamin; Ashkenasy, Nurit

    2011-07-01

    The fabrication of nanometric pores with controlled size is important for applications such as single molecule detection. We have recently suggested the use of focused electron beam induced etching (FEBIE) for the preparation of such nanopores in silicon nitride membranes. The use of a scanning probe microscope as the electron beam source makes this technique comparably accessible, opening the way to widespread fabrication of nanopores. Since the shape of the nanopores is critically important for their performance, in this work we focus on its analysis and study the dependence of the nanopore shape on the electron beam acceleration voltage. We show that the nanopore adopts a funnel-like shape, with a central pore penetrating the entire membrane, surrounded by an extended shallow-etched region at the top of the membrane. While the internal nanopore size was found to depend on the electron acceleration voltage, the nanopore edges extended beyond the primary electron beam spot size due to long-range effects, such as radiolysis and diffusion. Moreover, the size of the peripheral-etched region was found to be less dependent on the acceleration voltage. We also found that chemical etching is the rate-limiting step of the process and is only slightly dependent on the acceleration voltage. Furthermore, due to the chemical etch process the chemical composition of the nanopore rims was found to maintain the bulk membrane composition.

  5. Effects of electrons on the shape of nanopores prepared by focused electron beam induced etching

    Energy Technology Data Exchange (ETDEWEB)

    Liebes, Yael; Ashkenasy, Nurit [Department of Materials Engineering, Ben-Gurion University of the Negev, PO Box 653 Beer-Sheva (Israel); Hadad, Binyamin, E-mail: nurita@bgu.ac.il [The Ilze Kaz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, PO Box 653 Beer-Sheva (Israel)

    2011-07-15

    The fabrication of nanometric pores with controlled size is important for applications such as single molecule detection. We have recently suggested the use of focused electron beam induced etching (FEBIE) for the preparation of such nanopores in silicon nitride membranes. The use of a scanning probe microscope as the electron beam source makes this technique comparably accessible, opening the way to widespread fabrication of nanopores. Since the shape of the nanopores is critically important for their performance, in this work we focus on its analysis and study the dependence of the nanopore shape on the electron beam acceleration voltage. We show that the nanopore adopts a funnel-like shape, with a central pore penetrating the entire membrane, surrounded by an extended shallow-etched region at the top of the membrane. While the internal nanopore size was found to depend on the electron acceleration voltage, the nanopore edges extended beyond the primary electron beam spot size due to long-range effects, such as radiolysis and diffusion. Moreover, the size of the peripheral-etched region was found to be less dependent on the acceleration voltage. We also found that chemical etching is the rate-limiting step of the process and is only slightly dependent on the acceleration voltage. Furthermore, due to the chemical etch process the chemical composition of the nanopore rims was found to maintain the bulk membrane composition.

  6. SEM-induced shrinkage and site-selective modification of single-crystal silicon nanopores

    Science.gov (United States)

    Chen, Qi; Wang, Yifan; Deng, Tao; Liu, Zewen

    2017-07-01

    Solid-state nanopores with feature sizes around 5 nm play a critical role in bio-sensing fields, especially in single molecule detection and sequencing of DNA, RNA and proteins. In this paper we present a systematic study on shrinkage and site-selective modification of single-crystal silicon nanopores with a conventional scanning electron microscope (SEM). Square nanopores with measurable sizes as small as 8 nm × 8 nm and rectangle nanopores with feature sizes (the smaller one between length and width) down to 5 nm have been obtained, using the SEM-induced shrinkage technique. The analysis of energy dispersive x-ray spectroscopy and the recovery of the pore size and morphology reveal that the grown material along with the edge of the nanopore is the result of deposition of hydrocarbon compounds, without structural damage during the shrinking process. A simplified model for pore shrinkage has been developed based on observation of the cross-sectional morphology of the shrunk nanopore. The main factors impacting on the task of controllably shrinking the nanopores, such as the accelerating voltage, spot size, scanned area of e-beam, and the initial pore size have been discussed. It is found that single-crystal silicon nanopores shrink linearly with time under localized irradiation by SEM e-beam in all cases, and the pore shrinkage rate is inversely proportional to the initial equivalent diameter of the pore under the same e-beam conditions.

  7. Detection of a single enzyme molecule based on a solid-state nanopore sensor

    Science.gov (United States)

    Tan, ShengWei; Gu, DeJian; Liu, Hang; Liu, QuanJun

    2016-04-01

    The nanopore sensor as a high-throughput and low-cost technology can detect a single molecule in a solution. In the present study, relatively large silicon nitride (Si3N4) nanopores with diameters of ∼28 and ∼88 nm were fabricated successfully using a focused Ga ion beam. We have used solid-state nanopores with various sizes to detect the single horseradish peroxidase (HRP) molecule and for the first time analyzed single HRP molecular translocation events. In addition, a real-time monitored single enzyme molecular biochemical reaction and a translocation of the product of enzyme catalysis substrates were investigated by using a Si3N4 nanopore. Our nanopore system showed a high sensitivity in detecting single enzyme molecules and a real-time monitored single enzyme molecular biochemical reaction. This method could also be significant for studying gene expression or enzyme dynamics at the single-molecule level.

  8. Microfluidic anodization of aluminum films for the fabrication of nanoporous lipid bilayer support structures

    Directory of Open Access Journals (Sweden)

    Jaydeep Bhattacharya

    2011-02-01

    Full Text Available Solid state nanoporous membranes show great potential as support structures for biointerfaces. In this paper, we present a technique for fabricating nanoporous alumina membranes under constant-flow conditions in a microfluidic environment. This approach allows the direct integration of the fabrication process into a microfluidic setup for performing biological experiments without the need to transfer the brittle nanoporous material. We demonstrate this technique by using the same microfluidic system for membrane fabrication and subsequent liposome fusion onto the nanoporous support structure. The resulting bilayer formation is monitored by impedance spectroscopy across the nanoporous alumina membrane in real-time. Our approach offers a simple and efficient methodology to investigate the activity of transmembrane proteins or ion diffusion across membrane bilayers.

  9. Microfluidic anodization of aluminum films for the fabrication of nanoporous lipid bilayer support structures.

    Science.gov (United States)

    Bhattacharya, Jaydeep; Kisner, Alexandre; Offenhäusser, Andreas; Wolfrum, Bernhard

    2011-01-01

    Solid state nanoporous membranes show great potential as support structures for biointerfaces. In this paper, we present a technique for fabricating nanoporous alumina membranes under constant-flow conditions in a microfluidic environment. This approach allows the direct integration of the fabrication process into a microfluidic setup for performing biological experiments without the need to transfer the brittle nanoporous material. We demonstrate this technique by using the same microfluidic system for membrane fabrication and subsequent liposome fusion onto the nanoporous support structure. The resulting bilayer formation is monitored by impedance spectroscopy across the nanoporous alumina membrane in real-time. Our approach offers a simple and efficient methodology to investigate the activity of transmembrane proteins or ion diffusion across membrane bilayers.

  10. A novel input-parasitic compensation technique for a nanopore-based CMOS DNA detection sensor

    Science.gov (United States)

    Kim, Jungsuk

    2016-12-01

    This paper presents a novel input-parasitic compensation (IPC) technique for a nanopore-based complementary metal-oxide-semiconductor (CMOS) DNA detection sensor. A resistive-feedback transimpedance amplifier is typically adopted as the headstage of a DNA detection sensor to amplify the minute ionic currents generated from a nanopore and convert them to a readable voltage range for digitization. But, parasitic capacitances arising from the headstage input and the nanopore often cause headstage saturation during nanopore sensing, thereby resulting in significant DNA data loss. To compensate for the unwanted saturation, in this work, we propose an area-efficient and automated IPC technique, customized for a low-noise DNA detection sensor, fabricated using a 0.35- μm CMOS process; we demonstrated this prototype in a benchtop test using an α-hemolysin ( α-HL) protein nanopore.

  11. Ionic selectivity of nystatin A1 confined in nanoporous track-etched polymer membrane.

    Science.gov (United States)

    Balme, Sébastien; Thiele, Daniela; Kraszewski, Sebastian; Picaud, Fabien; Janot, Jean-Marc; Déjardin, Philippe

    2014-09-01

    The hybrid biological/polymeric solid-state nanopore membrane offers several opportunities to combine the advantage of biological channel (selectivity) and material (robustness). Based on this technology, the challenge is to obtain selective ionic exchange membranes, with no energy intake. The direct insertion of an ionic channel inside a nanopore should be a promise solution. Here, the authors report a hybrid nanopore based on nystatin A1 confinement in commercial nanopore membrane. Ionic transport and selectivity studies show that the hybrid nanopores exhibit mainly an anionic behaviour, on the contrary to biological conditions. However, the order of magnitude between the different ratios of permeation of several cationic species is retained even if the blocking of divalent cation is not totally proved.

  12. Cavitation nanopore in the dielectric fluid in the inhomogeneous, pulsed electric fields

    CERN Document Server

    Pekker, M

    2014-01-01

    This paper discusses the nanopores emerging and developing in a liquid dielectric under the action of the ponderomotive electrostrictive forces in a nonuniform electric field. It is shown that the gradient of the electric field in the vicinity of the rupture (cavitation nanopore) substantially increases and determines whether the rupture grows or collapses. The cavitation rupture in the liquid (nanopore) tends to stretch along the lines of the original field. The mechanism of the breakdown associated with the generation of secondary ruptures in the vicinity of the poles of the nanopore is proposed. The estimations of the extension time for nanopore in water and oil (polar and nonpolar liquids, respectively) are presented. A new mechanism of nano- and subnanosecond breakdown in the insulating (transformer) oil that can be realized in the vicinity of water microdroplets in modern nanosecond high-voltage devices is considered

  13. Influence of Anodic Conditions on Self-ordered Growth of Highly Aligned Titanium Oxide Nanopores

    Directory of Open Access Journals (Sweden)

    Hernández-Vélez M

    2007-01-01

    Full Text Available AbstractSelf-aligned nanoporous TiO2templates synthesized via dc current electrochemical anodization have been carefully analyzed. The influence of environmental temperature during the anodization, ranging from 2 °C to ambient, on the structure and morphology of the nanoporous oxide formation has been investigated, as well as that of the HF electrolyte chemical composition, its concentration and their mixtures with other acids employed for the anodization. Arrays of self-assembled titania nanopores with inner pores diameter ranging between 50 and 100 nm, wall thickness around 20–60 nm and 300 nm in length, are grown in amorphous phase, vertical to the Ti substrate, parallel aligned to each other and uniformly disordering distributed over all the sample surface. Additional remarks about the photoluminiscence properties of the titania nanoporous templates and the magnetic behavior of the Ni filled nanoporous semiconductor Ti oxide template are also included.

  14. Dynamics of polymer nanoparticles through a single artificial nanopore with a high-aspect-ratio.

    Science.gov (United States)

    Cabello-Aguilar, Simon; Chaaya, Adib Abou; Bechelany, Mikhael; Pochat-Bohatier, Céline; Balanzat, Emmanuel; Janot, Jean-Marc; Miele, Philippe; Balme, Sébastien

    2014-11-14

    The development of nanometric Coulter counters for nanoparticle detection is an attractive and promising field of research. In this work, we have studied the influence of the nanopore surface state on charged polymer nanoparticle translocations. To make this, the translocation of carboxylate modified polystyrene microspheres (diameter 40, 70 and 100 nm) has been investigated through two kinds of high aspect ratio nanopores (negative and uncharged). The latter were tailored by a single track-etched and atomic layer deposition technique. It was shown that the mobility and the energy barrier are strongly dependent on nanopore surface charge. Typically if the latter exhibits negative surface charge, the microsphere mobility increases and the global energy barrier of entrance inside the nanopore decreases with its diameter, converse to the uncharged nanopore.

  15. Nanoporous carbons as promising novel methane adsorbents for natural gas technology

    Institute of Scientific and Technical Information of China (English)

    Ali Morad Rashidi; Roghaye Lotfi; Amideddin Nouralishahi; Mohammad Ali Khodagholi; Masoud Zare; Faeghe Eslamipour

    2011-01-01

    Nanoporous carbons were synthesized using furfuryl alcohol and sucrose as precursors and MCM-41 and mordenite as nanoporous templates.The produced nanoporous carbons were used as adsorbent for methane storage.The average pore diameter of the samples varied from 3.9 nm to 5.9 nm and the BET surface area varied from 320 m2/g to 824 m2/g.The volumetric adsorption experiments revealed that MCM-41 and sucrose had better performance compared with mordenite and furfuryl alcohol,correspondingly.Also,the effect of precursor to template ratio on the structure of nanoporous carbons and their adsorption capacities was investigated.The nanoporous carbon produced from MCM-41 mesoporous molecular sieve partially filled by sucrose shows the best methane adsorption capacity among the tested samples.

  16. Empirical Properties of Multilingual Phone-To-Word Transduction

    Science.gov (United States)

    2008-01-01

    EMPIRICAL PROPERTIES OF MULTILINGUAL PHONE-TO-WORD TRANSDUCTION Geoffrey Zweig Microsoft Research gzweig@microsoft.com Jon Nedel U.S. Department of...69–88, 2002. [2] G. Saon, G. Zweig , and D. Povey, “Anatomy of an extremely fast LVCSR decoder,” in Interspeech, 2005. [3] S. Ortmanns, H. Ney, and A

  17. Exploring signal transduction networks using mass spectrometry-based proteomics

    NARCIS (Netherlands)

    Meijer, L.A.T.

    2012-01-01

    Mass spectrometry (MS)-based proteomics can be used to answer a diversity of biological questions. In this thesis, we describe the application of several MS-based proteomics approaches to get insight into several aspects of signal transduction. In Chapter 2, quantitative global phosphoproteomics are

  18. Signal transduction by the major histocompatibility complex class I molecule

    DEFF Research Database (Denmark)

    Pedersen, Anders Elm; Skov, S; Bregenholt, S;

    1999-01-01

    Ligation of cell surface major histocompatibility class I (MHC-I) proteins by antibodies, or by their native counter receptor, the CD8 molecule, mediates transduction of signals into the cells. MHC-I-mediated signaling can lead to both increased and decreased activity of the MHC-I-expressing cell...

  19. Coordinate gene regulation by fimbriae-induced signal transduction

    DEFF Research Database (Denmark)

    Schembri, Mark; Klemm, Per

    2001-01-01

    of Ag43 production. No effect was observed in an oxyR mutant. We conclude that fimbriae expression per se constitutes a signal transduction mechanism that affects a number of unrelated genes via the thiol-disulfide status of OxyR. Thus, phase variation in fimbrial expression is coordinated...

  20. Diffusion wave and signal transduction in biological live cells

    CERN Document Server

    Fan, Tian You

    2012-01-01

    Transduction of mechanical stimuli into biochemical signals is a fundamental subject for cell physics. In the experiments of FRET signal in cells a wave propagation in nanoscope was observed. We here develop a diffusion wave concept and try to give an explanation to the experimental observation. The theoretical prediction is in good agreement to result of the experiment.

  1. Signal transduction by growth factor receptors: signaling in an instant

    DEFF Research Database (Denmark)

    Dengjel, Joern; Akimov, Vyacheslav; Blagoev, Blagoy;

    2007-01-01

    -out by mass spectrometry-based proteomics has allowed exciting views on the very early events in signal transduction. Activation profiles of regulated phosphorylation sites on epidermal growth factor receptor and downstream signal transducers showed different kinetics within the first ten seconds...

  2. Protein phosphorylation and its role in archaeal signal transduction.

    Science.gov (United States)

    Esser, Dominik; Hoffmann, Lena; Pham, Trong Khoa; Bräsen, Christopher; Qiu, Wen; Wright, Phillip C; Albers, Sonja-Verena; Siebers, Bettina

    2016-09-01

    Reversible protein phosphorylation is the main mechanism of signal transduction that enables cells to rapidly respond to environmental changes by controlling the functional properties of proteins in response to external stimuli. However, whereas signal transduction is well studied in Eukaryotes and Bacteria, the knowledge in Archaea is still rather scarce. Archaea are special with regard to protein phosphorylation, due to the fact that the two best studied phyla, the Euryarchaeota and Crenarchaeaota, seem to exhibit fundamental differences in regulatory systems. Euryarchaeota (e.g. halophiles, methanogens, thermophiles), like Bacteria and Eukaryotes, rely on bacterial-type two-component signal transduction systems (phosphorylation on His and Asp), as well as on the protein phosphorylation on Ser, Thr and Tyr by Hanks-type protein kinases. Instead, Crenarchaeota (e.g. acidophiles and (hyper)thermophiles) only depend on Hanks-type protein phosphorylation. In this review, the current knowledge of reversible protein phosphorylation in Archaea is presented. It combines results from identified phosphoproteins, biochemical characterization of protein kinases and protein phosphatases as well as target enzymes and first insights into archaeal signal transduction by biochemical, genetic and polyomic studies.

  3. Cell biology symposium: Membrane trafficking and signal transduction

    Science.gov (United States)

    In general, membrane trafficking is a broad group of processes where proteins and other large molecules are distributed throughout the cell as well as adjacent extracellular spaces. Whereas signal transduction is a process where signals are transmitted through a series of chemical or molecular event...

  4. Polylysine modification of adenoviral fiber protein enhances muscle cell transduction.

    Science.gov (United States)

    Bouri, K; Feero, W G; Myerburg, M M; Wickham, T J; Kovesdi, I; Hoffman, E P; Clemens, P R

    1999-07-01

    Adenoviral vectors (ADVs) are used widely for gene delivery to different tissues including muscle. One particularly promising use for ADVs is in the transfer of the dystrophin gene to the muscle of patients with Duchenne muscular dystrophy (DMD). However, studies in different animal models of DMD suggest that ADVs inefficiently transduce mature skeletal muscle. In this article we test whether AdZ.F(pK7), a genetically modified ADV that expresses a polylysine moiety on the end of the fiber protein, could enhance transduction of muscle cells and circumvent the maturation-dependent loss of muscle infectivity by ADVs. The efficiency of transduction was tested at different levels of muscle maturation. In vitro, AdZ.F(pK7) showed a higher level of transduction at all stages of differentiation including myoblasts, myotubes, and single muscle fibers. In vivo, mature skeletal muscle was transduced fourfold better by AdZ.F(pK7) than by the unmodifled vector (AdZ.F). Together, these observations demonstrate improved ADV transduction of skeletal muscle by modifying ADV tropism, and provide a proof-of-principle that modification of ADVs to target muscle-specific molecules could result in tissue-specific transfer of skeletal muscle tissue as well.

  5. Mitogen-activated protein kinase and abscisic acid signal transduction

    NARCIS (Netherlands)

    Heimovaara-Dijkstra, S.; Testerink, C.; Wang, M.

    1998-01-01

    The phytohormone abscisic acid (ABA) is a classical plant hormone, responsible for regulation of abscission, diverse aspects of plant and seed development, stress responses and germination. It was found that ABA signal transduction in plants can involve the activity of type 2C-phosphatases (PP2C), c

  6. The MINOS Detectors

    CERN Document Server

    Grashorn, A H E W

    2005-01-01

    The Main Injector Neutrino Oscillation Search (MINOS) experiment's primary goal is the precision measurement of the neutrino oscillation parameters in the atmospheric neutrino sector. This long-baseline experiment uses Fermilab's NuMI beam, measured with a Near Detector at Fermilab, and again 735 km later using a Far Detector in the Soudan Mine Underground Lab in northern Minnesota. The detectors are magnetized iron/scintillator calorimeters. The Far Detector has been operational for cosmic ray and atmospheric neutrino data from July of 2003, the Near Detector from September 2004, and the NuMI beam started in early 2005. This poster presents details of the two detectors.

  7. GADRAS Detector Response Function.

    Energy Technology Data Exchange (ETDEWEB)

    Mitchell, Dean J.; Harding, Lee; Thoreson, Gregory G; Horne, Steven M.

    2014-11-01

    The Gamma Detector Response and Analysis Software (GADRAS) applies a Detector Response Function (DRF) to compute the output of gamma-ray and neutron detectors when they are exposed to radiation sources. The DRF is fundamental to the ability to perform forward calculations (i.e., computation of the response of a detector to a known source), as well as the ability to analyze spectra to deduce the types and quantities of radioactive material to which the detectors are exposed. This document describes how gamma-ray spectra are computed and the significance of response function parameters that define characteristics of particular detectors.

  8. The TALE Tower Detector

    Science.gov (United States)

    Bergman, D. R.

    The TA Low Energy Extension will include a Tower FluorescenceDetector. Extensive air showers at the lowest usful energies for fluorescence detectors will in general be close to the detector. This requires viewing all elevation angles to be able to reconstruct showers. The TALE Tower Detector, operating in conjunction with other TALE detectors will view elevation angles up to above 70 degrees, with an azimuthal coverage of about 90 degrees. Results from a prototype mirror operated in conjunction with the HiRes detector will also be presented.

  9. Role of aluminum doping on phase transformations in nanoporous titania anodic oxides

    Energy Technology Data Exchange (ETDEWEB)

    Bayata, Fatma [Istanbul Bilgi University, Department of Mechanical Engineering, 34060, Eyup, Istanbul (Turkey); Ürgen, Mustafa, E-mail: urgen@itu.edu.tr [Istanbul Technical University, Department of Metallurgical and Materials Engineering, 34469, Maslak, Istanbul (Turkey)

    2015-10-15

    The role of aluminium doping on anatase to rutile phase transformation of nanoporous titanium oxide films were investigated. For this purpose pure and aluminum doped metal films were deposited on alumina substrates by cathodic arc physical deposition. The nanoporous anodic oxides were prepared by porous anodizing of pure and aluminum doped titanium metallic films in an ethylene glycol + NH{sub 4}F based electrolyte. Nanoporous amorphous structures with 60–80 nm diameter and 2–4 μm length were formed on the surfaces of alumina substrates. The amorphous undoped and Al-doped TiO{sub 2} anodic oxides were heat-treated at different temperatures in the range of 280–720 °C for the investigation of their crystallization behavior. The combined effects of nanoporous structure and Al doping on crystallization behavior of titania were investigated using X-ray diffraction (XRD) and micro Raman analysis. The results indicated that both Al ions incorporated into the TiO{sub 2} structure and the nanoporous structure retarded the rutile formation. It was also revealed that presence or absence of metallic film underneath the nanopores has a major contribution to anatase-rutile transformation. - Highlights: • Al-doped TiO{sub 2} nanopores were grown on alumina substrates using anodization method. • The crystallization behavior of nanoporous Al-doped TiO{sub 2} were investigated. • Al doping into nanoporous TiO{sub 2} retarded the anatase-rutile transformation. • Nanostructuring has significant role in controlling rutile formation temperature. • The absence of the metallic film under the nanopores delayed the rutile formation.

  10. The sugarcane signal transduction (SUCAST catalogue: prospecting signal transduction in sugarcane

    Directory of Open Access Journals (Sweden)

    Glaucia Mendes Souza

    2001-12-01

    Full Text Available EST sequencing has enabled the discovery of many new genes in a vast array of organisms, and the utility of this approach to the scientific community is greatly increased by the establishment of fully annotated databases. The present study aimed to identify sugarcane ESTs sequenced in the sugarcane expressed sequence tag (SUCEST project (http://sucest.lad.ic.unicamp.br that corresponded to signal transduction components. We also produced a sugarcane signal transduction (SUCAST catalogue (http://sucest.lad.ic.unicamp.br/private/mining-reports/QG/QG-mining.htm that covered the main categories and pathways. Expressed sequence tags (ESTs encoding enzymes for hormone (gibberellins, ethylene, auxins, abscisic acid and jasmonic acid biosynthetic pathways were found and tissue specificity was inferred from their relative frequency of occurrence in the different libraries. Whenever possible, transducers of hormones and plant peptide signaling were catalogued to the respective pathway. Over 100 receptors were found in sugarcane, which contains a large family of Ser/Thr kinase receptors and also photoreceptors, histidine kinase receptors and their response regulators. G-protein and small GTPases were analyzed and compared to known members of these families found in mammalian and plant systems. Major kinase and phosphatase pathways were mapped, with special attention being given to the MAP kinase and the inositol pathway, both of which are well known in plants.O sequenciamento de ESTs (etiquetas de sequencias transcritas tem possibilitado a descoberta de muitos novos genes em uma ampla variedade de organismos. Um aumento do aproveitamento desta informação pela comunidade científica tem sido possível graças ao desenvolvimento de base de dados contendo seqüências completamente anotadas. O trabalho aqui relatado teve como objetivo a identificação de ESTs de cana de açúcar seqüenciadas através do projeto SUCEST (http://sucest.lad.ic. unicamp.br que

  11. Drift Chambers detectors; Detectores de deriva

    Energy Technology Data Exchange (ETDEWEB)

    Duran, I.; Martinez laso, L.

    1989-07-01

    We present here a review of High Energy Physics detectors based on drift chambers. The ionization, drift diffusion, multiplication and detection principles are described. Most common drift media are analysed, and a classification of the detectors according to its geometry is done. Finally the standard read-out methods are displayed and the limits of the spatial resolution are discussed. (Author) 115 refs.

  12. The role of nanopores on U(VI) sorption and redox behavior in U(VI)-contaminated subsurface sediments

    Energy Technology Data Exchange (ETDEWEB)

    Xu, Huifang; Roden, Eric E.; Kemner, Kenneth M.; Jung, Hun-Bok; Konishi, Hiromi; Boyanov, Maxim; Sun, Yubing; Mishra, Bhoopesh

    2013-10-16

    Most reactive surfaces in clay-dominated sediments are present within nanopores (pores of nm dimension). The behavior of geological fluids and minerals in nanopores is significantly different from those in normal non-nanoporous environments. The effect of nanopore surfaces on U(VI) sorption/desorption and reduction is likely to be significant in clay-rich subsurface environments. Our research results from both model nanopore system and natural sediments from both model system (synthetic nanopore alumina) and sediments from the ORNL Field Research Center prove that U(VI) sorption on nanopore surfaces can be greatly enhanced by nanopore confinement environments. The results from the project provide advanced mechanistic, quantitative information on the physiochemical controls on uranium sorption and redox behavior in subsurface sediments. The influence of nanopore surfaces on coupled uranium sorption/desorption and reduction processes is significant in virtually all subsurface environments, because most reactive surfaces are in fact nanopore surfaces. The results will enhance transfer of our laboratory-based research to a major field research initiative where reductive uranium immobilization is being investigated. Our results will also provide the basic science for developing in-situ colloidal barrier of nanoporous alumina in support of environmental remediation and long term stewardship of DOE sites.

  13. Thermal kinetic inductance detector

    Energy Technology Data Exchange (ETDEWEB)

    Cecil, Thomas; Gades, Lisa; Miceli, Antonio; Quaranta, Orlando

    2016-12-20

    A microcalorimeter for radiation detection that uses superconducting kinetic inductance resonators as the thermometers. The detector is frequency-multiplexed which enables detector systems with a large number of pixels.

  14. Forward tracking detectors

    Indian Academy of Sciences (India)

    Klaus Mönig

    2007-11-01

    Forward tracking is an essential part of a detector at the international linear collider (ILC). The requirements for forward tracking are explained and the proposed solutions in the detector concepts are shown.

  15. Signal transduction pathways in liver and the influence of hepatitis C virus infection on their activities

    Institute of Scientific and Technical Information of China (English)

    Magdalena M Dabrowska; Anatol Panasiuk; Robert Flisiak

    2009-01-01

    In liver, the most intensively studied transmembrane and intracellular signal transduction pathways are the Janus kinase signal transduction pathway, the mitogen-activated protein kinases signal transduction pathway, the transforming growth factor b signal transduction pathway, the tumor necrosis factor a signal transduction pathway and the recently discovered sphingolipid signal transduction pathway. All of them are activated by many different cytokines and growth factors. They regulate specific cell mechanisms such as hepatocytes proliferation, growth, differentiation, adhesion, apoptosis, and synthesis and degradation of the extracellular matrix. The replication cycle of hepatitis C virus (HCV) is intracellular and requires signal transduction to the nucleus to regulate transcription of its genes. Moreover, HCV itself, by its structural and nonstructural proteins, could influence the activity of the second signal messengers. Thus, the inhibition of the transmembrane and intracellular signal transduction pathways could be a new therapeutic target in chronic hepatitis C treatment.

  16. The OSMOND detector

    Energy Technology Data Exchange (ETDEWEB)

    Bateman, J.E. [Technology Dept. Science and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Oxford, Oxfordshire, OX11 0QX (United Kingdom); Dalgliesh, R. [ISIS Dept. Science and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Oxford, Oxfordshire, OX11 0QX (United Kingdom); Duxbury, D.M., E-mail: dom.duxbury@stfc.ac.uk [Technology Dept. Science and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Oxford, Oxfordshire, OX11 0QX (United Kingdom); Helsby, W.I. [Science and Technology Facilities Council, Daresbury Laboratory, Keckwick Lane, Daresbury, Warrington WA4 4AD (United Kingdom); Holt, S.A.; Kinane, C.J. [ISIS Dept. Science and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Oxford, Oxfordshire, OX11 0QX (United Kingdom); Marsh, A.S. [Diamond Light Source LTD, Harwell Science and Innovation Campus, Diamond House, Chilton, Didcot, Oxfordshire, OX11 0DE (United Kingdom); Rhodes, N.J.; Schooneveld, E.M. [ISIS Dept. Science and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Oxford, Oxfordshire, OX11 0QX (United Kingdom); Spill, E.J.; Stephenson, R. [Technology Dept. Science and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Oxford, Oxfordshire, OX11 0QX (United Kingdom)

    2013-01-11

    The development and testing of the Off Specular MicrOstrip Neutron Detector (OSMOND) is described. Based on a microstrip gas chamber the aim of the project was to produce a high counting rate detector capable of replacing the existing rate limited scintillator detectors currently in use on the CRISP reflectometer for off specular reflectometry experiments. The detector system is described together with results of neutron beam tests carried out at the ISIS spallation neutron source.

  17. The CAPRICE RICH detector

    Energy Technology Data Exchange (ETDEWEB)

    Basini, G. [INFN, Laboratori Nazionali di Frascati, Rome (Italy); Codino, A.; Grimani, C. [Perugia Univ. (Italy)]|[INFN, Perugia (Italy); De Pascale, M.P. [Rome Univ. `Tor Vergata` (Italy). Dip. di Fisica]|[INFN, Sezione Univ. `Tor Vergata` Rome (Italy); Cafagna, F. [Bari Univ. (Italy)]|[INFN, Bari (Italy); Golden, R.L. [New Mexico State Univ., Las Cruces, NM (United States). Particle Astrophysics Lab.; Brancaccio, F.; Bocciolini, M. [Florence Univ. (Italy)]|[INFN, Florence (Italy); Barbiellini, G.; Boezio, M. [Trieste Univ. (Italy)]|[INFN, Trieste (Italy)

    1995-09-01

    A compact RICH detector has been developed and used for particle identification in a balloon borne spectrometer to measure the flux of antimatter in the cosmic radiation. This is the first RICH detector ever used in space experiments that is capable of detecting unit charged particles, such as antiprotons. The RICH and all other detectors performed well during the 27 hours long flight.

  18. Plasmonic devices and sensors built from ordered nanoporous materials.

    Energy Technology Data Exchange (ETDEWEB)

    Jacobs, Benjamin W.; Kobayashi, Yoji (University of California, Berkeley); Houk, Ronald J. T.; Allendorf, Mark D.; Long, Jeffrey R. (University of California, Berkeley); Robertson, Ian M. (University of Illinois Urbana-Champaign, Urbana, IL); House, Stephen D. (University of Illinois Urbana-Champaign, Urbana, IL); Graham, Dennis D. (University of Illinois Urbana-Champaign, Urbana, IL); Talin, Albert Alec (National Institute of Standards & Technology, Gaithersburg, MD); Chang, Noel N. (University of Illinois Urbana-Champaign, Urbana, IL); El Gabaly Marquez, Farid

    2009-09-01

    The objective of this project is to lay the foundation for using ordered nanoporous materials known as metal-organic frameworks (MOFs) to create devices and sensors whose properties are determined by the dimensions of the MOF lattice. Our hypothesis is that because of the very short (tens of angstroms) distances between pores within the unit cell of these materials, enhanced electro-optical properties will be obtained when the nanopores are infiltrated to create nanoclusters of metals and other materials. Synthetic methods used to produce metal nanoparticles in disordered templates or in solution typically lead to a distribution of particle sizes. In addition, creation of the smallest clusters, with sizes of a few to tens of atoms, remains very challenging. Nanoporous metal-organic frameworks (MOFs) are a promising solution to these problems, since their long-range crystalline order creates completely uniform pore sizes with potential for both steric and chemical stabilization. We report results of synthetic efforts. First, we describe a systematic investigation of silver nanocluster formation within MOFs using three representative MOF templates. The as-synthesized clusters are spectroscopically consistent with dimensions {le} 1 nm, with a significant fraction existing as Ag{sub 3} clusters, as shown by electron paramagnetic resonance. Importantly, we show conclusively that very rapid TEM-induced MOF degradation leads to agglomeration and stable, easily imaged particles, explaining prior reports of particles larger than MOF pores. These results solve an important riddle concerning MOF-based templates and suggest that heterostructures composed of highly uniform arrays of nanoparticles within MOFs are feasible. Second, a preliminary study of methods to incorporate fulleride (K{sub 3}C{sub 60}) guest molecules within MOF pores that will impart electrical conductivity is described.

  19. Osmylated DNA, a novel concept for sequencing DNA using nanopores

    Science.gov (United States)

    Kanavarioti, Anastassia

    2015-03-01

    Saenger sequencing has led the advances in molecular biology, while faster and cheaper next generation technologies are urgently needed. A newer approach exploits nanopores, natural or solid-state, set in an electrical field, and obtains base sequence information from current variations due to the passage of a ssDNA molecule through the pore. A hurdle in this approach is the fact that the four bases are chemically comparable to each other which leads to small differences in current obstruction. ‘Base calling’ becomes even more challenging because most nanopores sense a short sequence and not individual bases. Perhaps sequencing DNA via nanopores would be more manageable, if only the bases were two, and chemically very different from each other; a sequence of 1s and 0s comes to mind. Osmylated DNA comes close to such a sequence of 1s and 0s. Osmylation is the addition of osmium tetroxide bipyridine across the C5-C6 double bond of the pyrimidines. Osmylation adds almost 400% mass to the reactive base, creates a sterically and electronically notably different molecule, labeled 1, compared to the unreactive purines, labeled 0. If osmylated DNA were successfully sequenced, the result would be a sequence of osmylated pyrimidines (1), and purines (0), and not of the actual nucleobases. To solve this problem we studied the osmylation reaction with short oligos and with M13mp18, a long ssDNA, developed a UV-vis assay to measure extent of osmylation, and designed two protocols. Protocol A uses mild conditions and yields osmylated thymidines (1), while leaving the other three bases (0) practically intact. Protocol B uses harsher conditions and effectively osmylates both pyrimidines, but not the purines. Applying these two protocols also to the complementary of the target polynucleotide yields a total of four osmylated strands that collectively could define the actual base sequence of the target DNA.

  20. Nanoporous oxidic solids: the confluence of heterogeneous and homogeneous catalysis.

    Science.gov (United States)

    Thomas, John Meurig; Hernandez-Garrido, Juan Carlos; Raja, Robert; Bell, Robert G

    2009-04-28

    The several factors that render certain kinds of nanoporous oxidic solids valuable for the design of a wide range of new heterogeneous catalysts are outlined and exemplified. These factors include: (i), their relative ease of preparation, when both mesoporous siliceous frameworks (ca. 20 to 250 A diameter pores) and microporous framework-substituted aluminophosphates (ca. 4 to 14 A diameter pores) can be tailored to suit particular catalytic needs according to whether regiospecific or enantio- or shape-selective conversions are the goal; (ii), the enormous internal (three-dimensional) areas that these nanoporous solids possess (typically 10(3) m(2) g(-1)) and the consequential ease of access of reactants through the internal pores of the solids; (iii), the ability, by judicious solid-state preparative methods to assemble spatially isolated, single-site active centres at the internal surfaces of these open-structure solids, thereby making the heterogeneous catalyst simulate the characteristic features of homogenous and enzymatic catalysts; (iv), the wide variety of in situ, time-resolved and ex situ experimental techniques, coupled with computational methods, that can pin-point the precise structure of the active site under operating conditions and facilitate the formulation of reaction intermediates and mechanisms. Varieties of catalysts are described for the synthesis (often under environmentally benign and solvent-free conditions) of a wide range of organic materials including commodity chemicals (such as adipic and terephthalic acid), fine and pharmaceutical chemicals (e.g. vitamin B(3)), alkenes, epoxides, and for the photocatalytic preferential destruction of carbon monoxide in the presence of hydrogen. Nanoporous oxidic solids are ideal materials to investigate the phenomenology of catalysis because, in many of them, little distinction exists between a model and a real catalyst.

  1. Bulk synthesis of nanoporous palladium and platinum powders

    Energy Technology Data Exchange (ETDEWEB)

    Robinson, David B; Fares, Stephen J; Tran, Kim L; Langham, Mary E

    2014-04-15

    Disclosed is a method for providing nanoporous palladium and platinum powders. These materials were synthesized on milligram to gram scales by chemical reduction of tetrahalo-complexes with ascorbate in a concentrated aqueous surfactant at temperatures between -20.degree. C. and 30.degree. C. The prepared particles have diameters of approximately 50 nm, wherein each particle is perforated by pores having diameters of approximately 3 nm, as determined by electron tomography. These materials are of potential value for hydrogen and electrical charge storage applications.

  2. Quantized biopolymer translocation through nanopores: departure from simple scaling

    CERN Document Server

    Melchionna, Simone; Fyta, Maria; Kaxiras, Efthimios; Succi, Sauro

    2009-01-01

    We discuss multiscale simulations of long biopolymer translocation through wide nanopores that can accommodate multiple polymer strands. The simulations provide clear evidence of folding quantization, namely, the translocation proceeds through multi-folded configurations characterized by a well-defined integer number of folds. As a consequence, the translocation time acquires a dependence on the average folding number, which results in a deviation from the single-exponent power-law characterizing single-file translocation through narrow pores. The mechanism of folding quantization allows polymers above a threshold length (approximately $1,000$ persistence lengths for double-stranded DNA) to exhibit cooperative behavior and as a result to translocate noticeably faster.

  3. Electrochemical Properties of Nanocomposite Nanoporous Carbon / Nickel Hydroxide

    Directory of Open Access Journals (Sweden)

    O.M. Hemiy

    2016-12-01

    Full Text Available The electrochemical properties of composite nanoporous carbon / nickel hydroxide as electrode material for hybrid supercapacitors were investigated. Fast reversible faradaic reactions flow was determined in connection with chemical makeup of the -Ni(OH2/С composite. It is shown that increase of nickel hydroxide concentration can intensify reactions. It is found that clean -Ni(OH2 has 238 F/g of specific capacity, but -Ni(OH2/С nanocomposite with 90 % nickel hydroxide has 292 F/g. Such capacity value can be considered as a maximum for these composites.

  4. Nanofiltration across Defect-Sealed Nanoporous Monolayer Graphene.

    Science.gov (United States)

    O'Hern, Sean C; Jang, Doojoon; Bose, Suman; Idrobo, Juan-Carlos; Song, Yi; Laoui, Tahar; Kong, Jing; Karnik, Rohit

    2015-05-13

    Monolayer nanoporous graphene represents an ideal membrane for molecular separations, but its practical realization is impeded by leakage through defects in the ultrathin graphene. Here, we report a multiscale leakage-sealing process that exploits the nonpolar nature and impermeability of pristine graphene to selectively block defects, resulting in a centimeter-scale membrane that can separate two fluid reservoirs by an atomically thin layer of graphene. After introducing subnanometer pores in graphene, the membrane exhibited rejection of multivalent ions and small molecules and water flux consistent with prior molecular dynamics simulations. The results indicate the feasibility of constructing defect-tolerant monolayer graphene membranes for nanofiltration, desalination, and other separation processes.

  5. Synthesis and mechanical behavior of nanoporous nanotwinned copper

    Energy Technology Data Exchange (ETDEWEB)

    Liu, Ran; Antoniou, Antonia [The Woodruff School of Mechanical Engineering, Georgia Institute of Technology, 801 Ferst Drive, Atlanta, Georgia 30332 (United States); Zheng, Shijian; Kevin Baldwin, Jon; Mara, Nathan [Materials Physics and Applications Division, Center for Integrated Nanotechnologies, MPA-CINT, Los Alamos National Laboratory, Los Alamos, New Mexico 87545 (United States); Kuthuru, Mary [Cross Keys High School, 1626 N Druid Hills Rd NE, Atlanta, Georgia 30319 (United States)

    2013-12-09

    We synthesize nanoporous copper (NP Cu) through electrochemical dealloying of amorphous Cu{sub 0.41}Si{sub 0.59} under compressive residual stress. Transmission Electron Microscopy reveals that struts are nanocrystalline with grain size equal to the strut thickness. Moreover, a significant population of twins with spacing ∼7 nm is present within each imaged grain. The hardness of this nanocrystalline, nanotwinned NP Cu is approximately one order of magnitude greater than reports on NP Cu in the literature. The yield strength of individual struts inferred through dimensional analysis is approximately an order of magnitude greater than bulk copper and compares well with other nanostructured copper systems.

  6. Nanoporous Silicified Phospholipids and Application to Controlled Glycolic Acid Release

    Directory of Open Access Journals (Sweden)

    Kang SangHwa

    2008-01-01

    Full Text Available Abstract This work demonstrates the synthesis and characterization of novel nanoporous silicified phospholipid bilayers assembled inorganic powders. The materials are obtained by silicification process with silica precursor at the hydrophilic region of phospholipid bilayers. This process involves the co-assembly of a chemically active phospholipids bilayer within the ordered porosity of a silica matrix and holds promise as a novel application for controlled drug release or drug containers with a high level of specificity and throughput. The controlled release application of the synthesized materials was achieved to glycolic acid, and obtained a zero-order release pattern due to the nanoporosity.

  7. Theory of fluid slip in charged capillary nanopores

    CERN Document Server

    Catalano, J; Biesheuvel, P M

    2016-01-01

    Based on the capillary pore model (space-charge theory) for combined fluid and ion flow through cylindrical nanopores or nanotubes, we derive the continuum equations modified to include wall slip. We focus on the ionic conductance and streaming conductance, cross-coefficients of relevance for electrokinetic energy conversion and electro-osmotic pumping. We combine the theory with a Langmuir-Stern 1-pK charge regulation boundary condition resulting in a non-monotonic dependence of the cross-coefficients on salt concentration.

  8. Combustion Synthesis Of Ultralow-density Nanoporous Gold Foams

    Energy Technology Data Exchange (ETDEWEB)

    Tappan, Bruce C [Los Alamos National Laboratory; Mueller, Alex H [Los Alamos National Laboratory; Steiner, Stephen A [Los Alamos National Laboratory; Luther, Erik P [Los Alamos National Laboratory

    2008-01-01

    A new synthetic pathway for producing nanoporous gold monoliths through combustion synthesis from Au bistetrazoJeamine complexes has been demonstrated. Applications of interest for Au nanofoams include new substrates for nanoparticle-mediated catalysis, embedded antennas, and spectroscopy. Integrated support-and-catalystin-one nanocomposites prepared through combustion synthesis of mixed AuBTA/metal oxide pellets would also be an interesting technology approach for low-cost in-line catalytic conversion media. Furthermore, we envision preparation of ultrahigh surface area gold electrodes for application in electrochemical devices through this method.

  9. Bulk synthesis of nanoporous palladium and platinum powders

    Science.gov (United States)

    Robinson, David B [Fremont, CA; Fares, Stephen J [Pleasanton, CA; Tran, Kim L [Livermore, CA; Langham, Mary E [Pleasanton, CA

    2012-04-17

    Disclosed is a method for providing nanoporous palladium and platinum powders. These materials were synthesized on milligram to gram scales by chemical reduction of tetrahalo-complexes with ascorbate in a concentrated aqueous surfactant at temperatures between -20.degree. C. and 30.degree. C. The prepared particles have diameters of approximately 50 nm, wherein each particle is perforated by pores having diameters of approximately 3 nm, as determined by electron tomography. These materials are of potential value for hydrogen and electrical charge storage applications.

  10. DMPD: LPS/TLR4 signal transduction pathway. [Dynamic Macrophage Pathway CSML Database

    Lifescience Database Archive (English)

    Full Text Available 18304834 LPS/TLR4 signal transduction pathway. Lu YC, Yeh WC, Ohashi PS. Cytokine. ...2008 May;42(2):145-51. Epub 2008 Mar 4. (.png) (.svg) (.html) (.csml) Show LPS/TLR4 signal transduction path...way. PubmedID 18304834 Title LPS/TLR4 signal transduction pathway. Authors Lu YC, Yeh WC, Ohashi PS. Publica

  11. Precise fabrication of a 5 nm graphene nanopore with a helium ion microscope for biomolecule detection

    Science.gov (United States)

    Deng, Yunsheng; Huang, Qimeng; Zhao, Yue; Zhou, Daming; Ying, Cuifeng; Wang, Deqiang

    2017-01-01

    We report a scalable method to fabricate high-quality graphene nanopores for biomolecule detection using a helium ion microscope (HIM). HIM milling shows promising capabilities for precisely controlling the size and shape, and may allow for the potential production of nanopores at wafer scale. Nanopores could be fabricated at different sizes ranging from 5 to 30 nm in diameter in few minutes. Compared with the current solid-state nanopore fabrication techniques, e.g. transmission electron microscopy, HIM is fast. Furthermore, we investigated the exposure-time dependence of graphene nanopore formation: the rate of pore expansion did not follow a simple linear relationship with exposure time, but a fast expansion rate at short exposure time and a slow rate at long exposure time. In addition, we performed biomolecule detection with our patterned graphene nanopore. The ionic current signals induced by 20-base single-stranded DNA homopolymers could be used as a basis for homopolymer differentiation. However, the charge interaction of homopolymer chains with graphene nanopores, and the conformations of homopolymer chains need to be further considered to improve the accuracy of discrimination.

  12. Basic evaluation of typical nanoporous silica nanoparticles in being drug carrier: Structure, wettability and hemolysis.

    Science.gov (United States)

    Li, Jing; Guo, Yingyu

    2017-04-01

    Herein, the present work devoted to study the basic capacity of nanoporous silica nanoparticles in being drug carrier that covered structure, wettability and hemolysis so as to provide crucial evaluation. Typical nanoporous silica nanoparticles that consist of nanoporous silica nanoparticles (NSN), amino modified nanoporous silica nanoparticles (amino-NSN), carboxyl modified nanoporous silica nanoparticles (carboxyl-NSN) and hierachical nanoporous silica nanoparticles (hierachical-NSN) were studied. The results showed that their wettability and hemolysis were closely related to structure and surface modification. Basically, wettability became stronger as the amount of OH on the surface of NSN was higher. Both large nanopores and surface modification can reduce the wettability of NSN. Furthermore, NSN series were safe to be used when they circulated into the blood in low concentration, while if high concentration can not be avoided during administration, high porosity or amino modification of NSN were safer to be considered. It is believed that the basic evaluation of NSN can make contribution in providing scientific instruction for designing drug loaded NSN systems. Copyright © 2016 Elsevier B.V. All rights reserved.

  13. Kinetics of nanopore fabrication during controlled breakdown of dielectric membranes in solution

    Science.gov (United States)

    Briggs, Kyle; Charron, Martin; Kwok, Harold; Le, Timothea; Chahal, Sanmeet; Bustamante, José; Waugh, Matthew; Tabard-Cossa, Vincent

    2015-02-01

    Nanopore fabrication by controlled breakdown (CBD) overcomes many of the challenges of traditional nanofabrication techniques, by reliably forming solid-state nanopores sub-2 nm in size in a low-cost and scalable way for nucleic acid analysis applications. Herein, the breakdown kinetics of thin dielectric membranes immersed in a liquid environment are investigated in order to gain deeper insights into the mechanism of solid-state nanopore formation by high electric fields. For various fabrication conditions, we demonstrate that nanopore fabrication time is Weibull-distributed, in support of the hypothesis that the fabrication mechanism is a stochastic process governed by the probability of forming a connected path across the membrane (i.e. a weakest-link problem). Additionally, we explore the roles that various ions and solvents play in breakdown kinetics, revealing that asymmetric pH conditions across the membrane can significantly affect nanopore fabrication time for a given voltage polarity. These results, characterizing the stochasticity of the nanopore fabrication process and highlighting the parameters affecting it, should assist researchers interested in exploiting the potential of CBD for nanofluidic channel fabrication, while also offering guidance towards the conceivable manufacturing of solid-state nanopore-based technologies for DNA sequencing applications.

  14. Structure and adsorption of water in non-uniform cylindrical nanopores

    Science.gov (United States)

    Lakatos, Greg; Torrie, Glenn; Patey, Gren

    2010-03-01

    Grand canonical Monte Carlo simulations are used to examine the adsorption and structure of water in the interior of cylindrical nanopores with non-uniform surfaces. Nanopores with radii in the range of 0.45 to 1.2nm are considered, and the axial symmetry of the nanopores is broken by varying the radius as a function of position along the pore axis, or by introducing regions where the strength of the water-nanopore interaction is reduced. Water in filled pores with a 0.6nm radius, exists in either a weakly structured fluid-like state, or a structured polarized state, with a pentagonal cross section. This structured state can be disrupted by creating hydrophobic regions on the nanopore surface, and the degree of disruption can be controlled by adjusting the size of these regions. Similarly, spatial variation in the nanopore radius can produce two condensation transitions, and vapor-liquid, and solid-liquid co-existences at points along the filling isotherm. This ability to control water structure through nanopore surface modification holds promise for the development of tunable nanoscale fluid conduits and storage devices.

  15. Low-dielectric, nanoporous polyimide thin films prepared from block copolymer templating

    Directory of Open Access Journals (Sweden)

    C. Wang

    2013-08-01

    Full Text Available In this paper, a new method to the preparation of low-dielectric nanoporous polyimide (PI films was addressed, based on the self-assembly structures of PS-b-P4VP/poly(amic acid (PAA, precursor of PI blends. It is found the microphase-separation structure of PS-b-P4VP/PAA is a precondition of the formation of nanoporous structures, which could be achieved by solvent annealing. Nanoporous PI films with spherical pore size of ~11 nm were obtained by thermal imidization followed by the removal of the PS-b-P4VP block copolymer. The porosity of the nanoporous PI films could be controlled by the weight fraction of the PS-b-P4VP block copolymer. The dielectric properties of the nanoporous PI films were studied, and it was found that the introduction of nanopores could effectively reduce the dielectric constant from 3.60 of dense PI films to 2.41 of nanoporous PI films with a porosity of 26%, making it promising in microelectronic devices. The fabrication method described here could be extended to other polymer systems.

  16. Ultrathin suspended nanopores with surface plasmon resonance fabricated by combined colloidal lithography and film transfer.

    Science.gov (United States)

    Junesch, Juliane; Sannomiya, Takumi

    2014-05-14

    Suspended plasmonic nanopores in ultrathin film layers were fabricated through a simple and widely applicable method combining colloidal lithography and thin film transfer, which allows mass production of short-range ordered nanopore arrays on a large scale. By this combined method, mechanically stable and flexible free-standing nanopore membranes with a thickness down to 15-30 nm were produced. The plasmon resonances of the ultrathin plasmonic nanopores fabricated in AlN/Au/AlN trilayer and single layer Au membranes were tuned to lie in the vis-NIR wavelength range by properly designing their dimensions. The optical responses to the refractive index changes were tested and applied to adlayer sensing. The trilayer nanopore membrane showed a unique property to support water only on one side of the membrane, which was confirmed by the resonance shift and comparison with numerical simulation. Pore size reduction down to 10 nm can be achieved through additional material deposition. The filtering function of such pore-size-reduced conical shaped nanofunnels has also been demonstrated. The presented nanopore fabrication method offers new platforms for ultrathin nanopore sensing or filtering devices with controlled pore-size and optical properties. The film transfer technique employed in this work would enable the transformation of any substrate-based nanostructures to free-standing membrane based devices without complicated multiple etching processes.

  17. Single molecule sensing with solid-state nanopores: novel materials, methods, and applications.

    Science.gov (United States)

    Miles, Benjamin N; Ivanov, Aleksandar P; Wilson, Kerry A; Doğan, Fatma; Japrung, Deanpen; Edel, Joshua B

    2013-01-07

    This tutorial review will introduce and explore the fundamental aspects of nanopore (bio)sensing, fabrication, modification, and the emerging technologies and applications that both intrigue and inspire those working in and around the field. Although nanopores can be classified into two categories, solid-state and biological, they are essentially two sides of the same coin. For instance, both garner popularity due to their ability to confine analytes of interest to a nanoscale volume. Due to the vast diversity of nanopore platforms and applications, no single review can cover the entire landscape of published work in the field. Therefore, in this article focus will be placed on recent advancements and developments taking place in the field of solid-state nanopores. It should be stated that the intention of this tutorial review is not to cite all articles relating to solid-state nanopores, but rather to highlight recent, select developments that will hopefully benefit the new and seasoned scientist alike. Initially we begin with the fundamentals of solid-state nanopore sensing. Then the spotlight is shone on the sophisticated fabrication methods that have their origins in the semiconductor industry. One inherent advantage of solid-state nanopores is in the ease of functionalizing the surface with a range of molecules carrying functional groups. Therefore, an entire section is devoted to highlighting various chemical and bio-molecular modifications and explores how these permit the development of novel sensors with specific targets and functions. The review is completed with a discussion on novel detection strategies using nanopores. Although the most popular mode of nanopore sensing is based upon what has come to be known as ionic-current blockade sensing, there is a vast, growing literature based around exploring alternative detection techniques to further expand on the versatility of the sensors. Such techniques include optical, electronic, and force based methods

  18. Molecular methods for the study of signal transduction in plants

    KAUST Repository

    Irving, Helen R.

    2013-09-03

    Novel and improved analytical methods have led to a rapid increase in our understanding of the molecular mechanism underlying plant signal transduction. Progress has been made both at the level of single-component analysis and in vivo imaging as well as at the systems level where transcriptomics and particularly phosphoproteomics afford a window into complex biological responses. Here we review the role of the cyclic nucleotides cAMP and cGMP in plant signal transduction as well as the discovery and biochemical and biological characterization of an increasing number of complex multi-domain nucleotide cyclases that catalyze the synthesis of cAMP and cGMP from ATP and GTP, respectively. © Springer Science+Business Media New York 2013.

  19. A PKD Channel-based Biosensor for Taste Transduction

    Science.gov (United States)

    Wu, Chunsheng; Du, Liping; Hu, Liang; Zhang, Wei; Zhao, Luhang; Wang, Ping

    2011-09-01

    This study describes a micro electrode array (MEA)-based biosensor for taste transduction using heterologous expressed taste polycystic kidney disease-like (PKD) channels as molecular sensors. Taste PKD1L3/2L1 channels were expressed on the plasma membrane of human embryo kidney (HEK)-293 cells [1]. Then the cells were cultured on the surface of MEA chip [2] to record the responses of PKD channels to sour stimulations by monitoring membrane potential. The results indicate this MEA-based biosensor can record the special off-responses of PKD channels to sour stimulation in a non-invasive manner for a long term. It may provide an alternative tool for the research of taste transduction, especially for the characterization of taste ion channels.

  20. The new sideway of CNTF signal transduction pathway

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    The action of ciliary neurotrophic factor (CNTF) on intercellular free Ca2+ concentrations [Ca2+]I induced by glutamate (Glu) in primary cultured hippocampal neurons were detected with Fura2/AM,a Ca2+-sensitive fluorophore,and the morphological influence of G-protein on it was ob- jected. Glu could induce rapid increase of [Ca2+]I in hippo- campal neurons. CNTF had no significant action on [Ca2+]I in resting hippocampal neurons. However,after incubation of CNTF for 5 min,the increase of [Ca2+]I in hippocampal neurons rapidly induced by Glu was inhibited. Pretussis toxin (PTX)-sensitive G protein could block the action. These results indicate that a new non-genomic rapid sideway might exist in the upper stream of CNTF signal transduction pathway,which was related to Ca2+ signal transduction.

  1. Role of the phosphoinositide signal transduction pathway in the endometrium

    Institute of Scientific and Technical Information of China (English)

    Vincenza Rita Lo Vasco

    2012-01-01

    The regulation of calcium concentration triggers physiological events in all cell types. Unregulated elevation in calcium concentrations is often cytotoxic.In fact, uncontrolled calcium levels alter proteins’ function, apoptosis regulation, as well as proliferation, secretion and contraction.Calcium levels are tightly regulated.A great interest was paid to signal transduction pathways for their role in mammalian reproduction.The role of phosphoinositide(PI) signal transduction pathway and related phosphoinositide-specific phospholipaseC(PI-PLC) enzymes in the regulation of calcium levels was actively studied and characterized.However, the role of PI signaling andPI-PLC enzymes in the endometrium is far to be completely highlighted.In the present review the role ofPI, the expression of selectedPI-PLC enzymes and the crosstalk with further signaling systems in the endometrium will be discussed.

  2. Study of spatial signal transduction in bistable switches

    Science.gov (United States)

    Zhao, Qi; Yao, Cheng-Gui; Tang, Jun; Liu, Li-Wei

    2016-10-01

    Bistable switch modules are among the most important fundamental motifs in signal-transduction pathways. To better understand their spatial signal transduction, we model the diffusion process in the one-dimensional (1-D) domain. We find that when none of the elements diffuse, the response of the system exhibits a spatial switch-like property. However, when one of the elements is highly diffusible, the response of the system does not show any spatial switching behavior. Furthermore, we observe that the spatial responses of the system are more sensitive to the time constant of the switch when none of the elements are diffusible. Further, a slow loop keeps the system in the high steady state more positions than that in the fast loop. Finally, we consolidate our numerical results analytically by performing a mathematical method.

  3. Maxwell's demon in biochemical signal transduction with feedback loop.

    Science.gov (United States)

    Ito, Sosuke; Sagawa, Takahiro

    2015-06-23

    Signal transduction in living cells is vital to maintain life itself, where information transfer in noisy environment plays a significant role. In a rather different context, the recent intensive research on 'Maxwell's demon'-a feedback controller that utilizes information of individual molecules-have led to a unified theory of information and thermodynamics. Here we combine these two streams of research, and show that the second law of thermodynamics with information reveals the fundamental limit of the robustness of signal transduction against environmental fluctuations. Especially, we find that the degree of robustness is quantitatively characterized by an informational quantity called transfer entropy. Our information-thermodynamic approach is applicable to biological communication inside cells, in which there is no explicit channel coding in contrast to artificial communication. Our result could open up a novel biophysical approach to understand information processing in living systems on the basis of the fundamental information-thermodynamics link.

  4. Equalized near maximum likelihood detector

    OpenAIRE

    2012-01-01

    This paper presents new detector that is used to mitigate intersymbol interference introduced by bandlimited channels. This detector is named equalized near maximum likelihood detector which combines nonlinear equalizer and near maximum likelihood detector. Simulation results show that the performance of equalized near maximum likelihood detector is better than the performance of nonlinear equalizer but worse than near maximum likelihood detector.

  5. High-energy detector

    Science.gov (United States)

    Bolotnikov, Aleksey E [South Setauket, NY; Camarda, Giuseppe [Farmingville, NY; Cui, Yonggang [Upton, NY; James, Ralph B [Ridge, NY

    2011-11-22

    The preferred embodiments are directed to a high-energy detector that is electrically shielded using an anode, a cathode, and a conducting shield to substantially reduce or eliminate electrically unshielded area. The anode and the cathode are disposed at opposite ends of the detector and the conducting shield substantially surrounds at least a portion of the longitudinal surface of the detector. The conducting shield extends longitudinally to the anode end of the detector and substantially surrounds at least a portion of the detector. Signals read from one or more of the anode, cathode, and conducting shield can be used to determine the number of electrons that are liberated as a result of high-energy particles impinge on the detector. A correction technique can be implemented to correct for liberated electron that become trapped to improve the energy resolution of the high-energy detectors disclosed herein.

  6. Tuning piezoresistive transduction in nanomechanical resonators by geometrical asymmetries

    Energy Technology Data Exchange (ETDEWEB)

    Llobet, J.; Sansa, M.; Lorenzoni, M.; Pérez-Murano, F., E-mail: francesc.perez@csic.es [Institut de Microelectrònica de Barcelona (IMB-CNM CSIC), Campus UAB, 08193 Bellaterra (Spain); Borrisé, X. [Institut Català de Nanociència i Nanotecnologia (ICN2), Campus UAB, 08193 Bellaterra Spain (Spain); San Paulo, A. [Instituto de Microelectrónica de Madrid (IMM-CSIC), 28760 Tres Cantos, Madrid (Spain)

    2015-08-17

    The effect of geometrical asymmetries on the piezoresistive transduction in suspended double clamped beam nanomechanical resonators is investigated. Tapered silicon nano-beams, fabricated using a fast and flexible prototyping method, are employed to determine how the asymmetry affects the transduced piezoresistive signal for different mechanical resonant modes. This effect is attributed to the modulation of the strain in pre-strained double clamped beams, and it is confirmed by means of finite element simulations.

  7. Post-translational modification of PII signal transduction proteins

    OpenAIRE

    Mike eMerrick

    2015-01-01

    The PII proteins constitute one of the most widely distributed families of signal transduction proteins in nature. They are pivotal players in the control of nitrogen metabolism in bacteria and archaea, and are also found in the plastids of plants. Quite remarkably PII proteins control the activities of a diverse range of enzymes, transcription factors and membrane transport proteins, and in all known cases they achieve their regulatory effect by direct interaction with their target. PII prot...

  8. Nanoscale dynamics of Joule heating and bubble nucleation in a solid-state nanopore

    Science.gov (United States)

    Levine, Edlyn V.; Burns, Michael M.; Golovchenko, Jene A.

    2016-01-01

    We present a mathematical model for Joule heating of an electrolytic solution in a nanopore. The model couples the electrical and thermal dynamics responsible for rapid and extreme superheating of the electrolyte within the nanopore. The model is implemented numerically with a finite element calculation, yielding a time and spatially resolved temperature distribution in the nanopore region. Temperatures near the thermodynamic limit of superheat are predicted to be attained just before the explosive nucleation of a vapor bubble is observed experimentally. Knowledge of this temperature distribution enables the evaluation of related phenomena including bubble nucleation kinetics, relaxation oscillation, and bubble dynamics.

  9. Nanoscale dynamics of Joule heating and bubble nucleation in a solid-state nanopore.

    Science.gov (United States)

    Levine, Edlyn V; Burns, Michael M; Golovchenko, Jene A

    2016-01-01

    We present a mathematical model for Joule heating of an electrolytic solution in a nanopore. The model couples the electrical and thermal dynamics responsible for rapid and extreme superheating of the electrolyte within the nanopore. The model is implemented numerically with a finite element calculation, yielding a time and spatially resolved temperature distribution in the nanopore region. Temperatures near the thermodynamic limit of superheat are predicted to be attained just before the explosive nucleation of a vapor bubble is observed experimentally. Knowledge of this temperature distribution enables the evaluation of related phenomena including bubble nucleation kinetics, relaxation oscillation, and bubble dynamics.

  10. CO2 Photoreduction by Formate Dehydrogenase and a Ru-Complex in a Nanoporous Glass Reactor.

    Science.gov (United States)

    Noji, Tomoyasu; Jin, Tetsuro; Nango, Mamoru; Kamiya, Nobuo; Amao, Yutaka

    2017-02-01

    In this study, we demonstrated the conversion of CO2 to formic acid under ambient conditions in a photoreduction nanoporous reactor using a photosensitizer, methyl viologen (MV(2+)), and formate dehydrogenase (FDH). The overall efficiency of this reactor was 14 times higher than that of the equivalent solution. The accumulation rate of formic acid in the nanopores of 50 nm is 83 times faster than that in the equivalent solution. Thus, this CO2 photoreduction nanoporous glass reactor will be useful as an artificial photosynthesis system that converts CO2 to fuel.

  11. Planarization of a surface of nanoporous silica-titania composition by atomic-molecular chemical assembly

    Science.gov (United States)

    Luchinin, V. V.; Panov, M. F.; Romanov, A. A.

    2017-05-01

    The processes involved in the planarization of the surface of nanoporous SiO2 by the atomicmolecular deposition of nanoscale TiO2 films were studied in regimes with different degrees of penetration of TiO2 into SiO2 nanopores. The technological process parameters that correspond to different regimes of surface planarization were examined. The degree of penetration of TiO2 into SiO2 nanopores was monitored using reflection ellipsometry by measuring the depth distribution of the refraction index within the two-layer model.

  12. Translocation of single-wall carbon nanotubes through solid-state nanopores.

    Science.gov (United States)

    Hall, Adam R; Keegstra, Johannes M; Duch, Matthew C; Hersam, Mark C; Dekker, Cees

    2011-06-08

    We report the translocation of individual single-wall carbon nanotubes (SWNTs) through solid-state nanopores. Single-strand DNA oligomers are used to both disperse the SWNTs in aqueous solution and to provide them with a net charge, allowing them to be driven through the nanopores by an applied electric field. The resulting temporary interruptions in the measured nanopore conductance provide quantitative information on the diameter and length of the translocated nanotubes at a single-molecule level. Furthermore, we demonstrate that the technique can be utilized to monitor bundling of SWNT in solution by using complementary nucleotides to induce tube-tube agglomeration.

  13. ARTICLES: Effect of Interaction upon Translocation of Confined Polymer Chain Through Nanopore

    Science.gov (United States)

    Wang, Yao; Xie, Yong-jun; Yang, Hai-yang; Zhang, Xing-yuan

    2010-06-01

    The effect of the interaction between nanopore and chain monomer on the translocation of a single polymer chain confined in a finite size square through an interacting nanopore to a large space has been studied by two-dimensional bond fluctuation model with Monte Carlo simulation. Results indicate that the free energy barrier before the successful translocation of the chain depends linearly on the chain length as well as the nanopore length for different pore-polymer interaction, and the attractive interaction reduces the free energy barrier, leading to the reduction of the average trapping time.

  14. Molecular dynamics study on mechanism of preformed particle gel transporting through nanopores: Surface chemistry and heterogeneity

    Science.gov (United States)

    Cui, Peng; Zhang, Heng; Ma, Ying; Hao, Qingquan; Liu, Gang; Sun, Jichao; Yuan, Shiling

    2017-10-01

    The translocation behavior of preformed particle gel (PPG) in porous media is crucial for its application in enhanced oil recovery. By means of non-equilibrium molecular dynamics simulation, the translocation mechanism of PPG confined in different silica nanopores were investigated. The influence of surface chemistry and chemical heterogeneity of silica nanopore on the translocation process was revealed. As the degree of surface hydroxylation increases and the heterogeneity decreases, the pulling force needed to drive PPG decreases. We infer that the nanopore's surface (i.e. surface chemistry and heterogeneity) affects the translocation of PPG indirectly by forming different hydration layers.

  15. Identification of photoperception and light signal transduction pathways in citrus

    Directory of Open Access Journals (Sweden)

    Vera Quecini

    2007-01-01

    Full Text Available Studies employing model species have elucidated several aspects of photoperception and light signal transduction that control plant development. However, the information available for economically important crops is scarce. Citrus genome databases of expressed sequence tags (EST were investigated in order to identify genes coding for functionally characterized proteins responsible for light-regulated developmental control in model plants. Approximately 176,200 EST sequences from 53 libraries were queried and all bona fide and putative photoreceptor gene families were found in citrus species. We have identified 53 orthologs for several families of transcriptional regulators and cytoplasmic proteins mediating photoreceptor-induced responses although some important Arabidopsis phytochrome- and cryptochrome-signaling components are absent from citrus sequence databases. The main gene families responsible for phototropin-mediated signal transduction were present in citrus transcriptome, including general regulatory factors (14-3-3 proteins, scaffolding elements and auxin-responsive transcription factors and transporters. A working model of light perception, signal transduction and response-eliciting in citrus is proposed based on the identified key components. These results demonstrate the power of comparative genomics between model systems and economically important crop species to elucidate several aspects of plant physiology and metabolism.

  16. An Electrokinetic Model of Transduction in the Semicircular Canal

    Science.gov (United States)

    O'Leary, Dennis P.

    1970-01-01

    Transduction in the semicircular canal was studied by focusing an infrared beam on either side of exposed ampullae from the posterior canals of Rana pipiens. The direction of fluid movement resulting from a stimulus was inferred by observing the polarity of the change in afferent impulse mean rate relative to the spontaneous value. On the basis of the accepted functional polarization of this receptor, the results indicate that fluid moved toward the warmer side of the ampulla. Convection and thermal reception were shown to be unlikely explanations for these results. Morover, cupular displacements toward the warmer side would not be expected. Because thermo-osmosis can cause fluid to move toward the warmer side in a gelatin membrane, the results can be interpreted as evidence that thermo-osmosis occurred in the gelatinous cupula and influenced the transduction mechanism. Thermo-osmosis of liquids appears to be due to an electric field that is set up in a charged membrane; hence, the hair cells might have detected an electric field that occurred in the cupula during thermo-osmosis. Electroreception might be an important link in the transduction of physiological stimuli also. Rotational stimuli could result in weak electric fields in the cupula by the mechanoelectric effect. Cupular displacements could be important for large stimuli, but extrapolations to threshold stimuli suggest displacements of angstrom amplitudes. Therefore, electroreception by the hair cells could be an explanation of the great sensitivity that has been observed in the semicircular canal and other labyrinthine receptors. PMID:5496906

  17. State-time spectrum of signal transduction logic models

    Science.gov (United States)

    MacNamara, Aidan; Terfve, Camille; Henriques, David; Peñalver Bernabé, Beatriz; Saez-Rodriguez, Julio

    2012-08-01

    Despite the current wealth of high-throughput data, our understanding of signal transduction is still incomplete. Mathematical modeling can be a tool to gain an insight into such processes. Detailed biochemical modeling provides deep understanding, but does not scale well above relatively a few proteins. In contrast, logic modeling can be used where the biochemical knowledge of the system is sparse and, because it is parameter free (or, at most, uses relatively a few parameters), it scales well to large networks that can be derived by manual curation or retrieved from public databases. Here, we present an overview of logic modeling formalisms in the context of training logic models to data, and specifically the different approaches to modeling qualitative to quantitative data (state) and dynamics (time) of signal transduction. We use a toy model of signal transduction to illustrate how different logic formalisms (Boolean, fuzzy logic and differential equations) treat state and time. Different formalisms allow for different features of the data to be captured, at the cost of extra requirements in terms of computational power and data quality and quantity. Through this demonstration, the assumptions behind each formalism are discussed, as well as their advantages and disadvantages and possible future developments.

  18. The Hippo signal transduction network in skeletal and cardiac muscle.

    Science.gov (United States)

    Wackerhage, Henning; Del Re, Dominic P; Judson, Robert N; Sudol, Marius; Sadoshima, Junichi

    2014-08-05

    The discovery of the Hippo pathway can be traced back to two areas of research. Genetic screens in fruit flies led to the identification of the Hippo pathway kinases and scaffolding proteins that function together to suppress cell proliferation and tumor growth. Independent research, often in the context of muscle biology, described Tead (TEA domain) transcription factors, which bind CATTCC DNA motifs to regulate gene expression. These two research areas were joined by the finding that the Hippo pathway regulates the activity of Tead transcription factors mainly through phosphorylation of the transcriptional coactivators Yap and Taz, which bind to and activate Teads. Additionally, many other signal transduction proteins crosstalk to members of the Hippo pathway forming a Hippo signal transduction network. We discuss evidence that the Hippo signal transduction network plays important roles in myogenesis, regeneration, muscular dystrophy, and rhabdomyosarcoma in skeletal muscle, as well as in myogenesis, organ size control, and regeneration of the heart. Understanding the role of Hippo kinases in skeletal and heart muscle physiology could have important implications for translational research. Copyright © 2014, American Association for the Advancement of Science.

  19. Signal Transduction Pathways of TNAP: Molecular Network Analyses.

    Science.gov (United States)

    Négyessy, László; Györffy, Balázs; Hanics, János; Bányai, Mihály; Fonta, Caroline; Bazsó, Fülöp

    2015-01-01

    Despite the growing body of evidence pointing on the involvement of tissue non-specific alkaline phosphatase (TNAP) in brain function and diseases like epilepsy and Alzheimer's disease, our understanding about the role of TNAP in the regulation of neurotransmission is severely limited. The aim of our study was to integrate the fragmented knowledge into a comprehensive view regarding neuronal functions of TNAP using objective tools. As a model we used the signal transduction molecular network of a pyramidal neuron after complementing with TNAP related data and performed the analysis using graph theoretic tools. The analyses show that TNAP is in the crossroad of numerous pathways and therefore is one of the key players of the neuronal signal transduction network. Through many of its connections, most notably with molecules of the purinergic system, TNAP serves as a controller by funnelling signal flow towards a subset of molecules. TNAP also appears as the source of signal to be spread via interactions with molecules involved among others in neurodegeneration. Cluster analyses identified TNAP as part of the second messenger signalling cascade. However, TNAP also forms connections with other functional groups involved in neuronal signal transduction. The results indicate the distinct ways of involvement of TNAP in multiple neuronal functions and diseases.

  20. Key cancer cell signal transduction pathways as therapeutic targets.

    Science.gov (United States)

    Bianco, Roberto; Melisi, Davide; Ciardiello, Fortunato; Tortora, Giampaolo

    2006-02-01

    Growth factor signals are propagated from the cell surface, through the action of transmembrane receptors, to intracellular effectors that control critical functions in human cancer cells, such as differentiation, growth, angiogenesis, and inhibition of cell death and apoptosis. Several kinases are involved in transduction pathways via sequential signalling activation. These kinases include transmembrane receptor kinases (e.g., epidermal growth factor receptor EGFR); or cytoplasmic kinases (e.g., PI3 kinase). In cancer cells, these signalling pathways are often altered and results in a phenotype characterized by uncontrolled growth and increased capability to invade surrounding tissue. Therefore, these crucial transduction molecules represent attractive targets for cancer therapy. This review will summarize current knowledge of key signal transduction pathways, that are altered in cancer cells, as therapeutic targets for novel selective inhibitors. The most advanced targeted agents currently under development interfere with function and expression of several signalling molecules, including the EGFR family; the vascular endothelial growth factor and its receptors; and cytoplasmic kinases such as Ras, PI3K and mTOR.

  1. Crosstalk between adjacent nanopores in a solid-state membrane array for multi-analyte high-throughput biomolecule detection

    Science.gov (United States)

    Raza, Muhammad Usman; Saleem, Sajid; Ali, Waqas; Iqbal, Samir M.

    2016-08-01

    Single nanopores are used to detect a variety of biological molecules. The modulations in ionic current under applied bias across the nanopore contain important information about translocating species, thus providing single analyte detection. These systems are, however, challenged in practical situations where multiple analytes have to be detected at high throughput. This paper presents the analysis of a multi-nanopore system that can be used for the detection of analytes with high throughput. As a scalable model, two nanopores were simulated in a single solid-state membrane. The interactions of the electric fields at the mouths of the individual nanopores were analyzed. The data elucidated the electrostatic properties of the nanopores from a single membrane and provided a framework to calculate the -3 dB distance, akin to the Debye length, from one nanopore to the other. This distance was the minimum distance between the adjacent nanopores such that their individual electric fields did not significantly interact with one another. The results can help in the optimal experimental design to construct solid-state nanopore arrays for any given nanopore size and applied bias.

  2. Surface-modified silica colloidal crystals: nanoporous films and membranes with controlled ionic and molecular transport.

    Science.gov (United States)

    Zharov, Ilya; Khabibullin, Amir

    2014-02-18

    Nanoporous membranes are important for the study of the transport of small molecules and macromolecules through confined spaces and in applications ranging from separation of biomacromolecules and pharmaceuticals to sensing and controlled release of drugs. For many of these applications, chemists need to gate the ionic and molecular flux through the nanopores, which in turn depends on the ability to control the nanopore geometry and surface chemistry. Most commonly used nanoporous membrane materials are based on polymers. However, the nanostructure of polymeric membranes is not well-defined, and their surface is hard to modify. Inorganic nanoporous materials are attractive alternatives for polymers in the preparation of nanoporous membranes. In this Account, we describe the preparation and surface modification of inorganic nanoporous films and membranes self-assembled from silica colloidal spheres. These spheres form colloidal crystals with close-packed face centered cubic lattices upon vertical deposition from colloidal solutions. Silica colloidal crystals contain ordered arrays of interconnected three dimensional voids, which function as nanopores. We can prepare silica colloidal crystals as supported thin films on various flat solid surfaces or obtain free-standing silica colloidal membranes by sintering the colloidal crystals above 1000 °C. Unmodified silica colloidal membranes are capable of size-selective separation of macromolecules, and we can surface-modify them in a well-defined and controlled manner with small molecules and polymers. For the surface modification with small molecules, we use silanol chemistry. We grow polymer brushes with narrow molecular weight distribution and controlled length on the colloidal nanopore surface using atom transfer radical polymerization or ring-opening polymerization. We can control the flux in the resulting surface-modified nanoporous films and membranes by pH and ionic strength, temperature, light, and small molecule

  3. Transduction in Streptomyces hygroscopicus mediated by the temperate bacteriophage SH10.

    Science.gov (United States)

    Süss, F; Klaus, S

    1981-01-01

    The temperate actinophage SH10 mediates generalized transduction in Streptomyces hygroscopicus at low frequency. The efficiency of transduction depends on the average phage input, age of outgrowing spores of the recipient and on the selective marker. The highest EOT was found for the auxotrophic mutants 21(phe-) and 5(try-) (4.2 x 10(-6) and 2.7 x 10(-6), respectively). Transduction of the thermosensitive mutant NG14-216 ts 35 was two orders of magnitude lower (2.5 x 10(-8)). The transductant colonies segregated into stable and unstable clones. Stable transductants were never found to be lysogenic for phage SH10.

  4. Vapor transport through short hydrophobic nanopores for desalination

    Science.gov (United States)

    Lee, Jongho; O'Hern, Sean; Laoui, Tahar; Rahman, Faizur; Karnik, Rohit

    2011-11-01

    We propose a concept for desalination of water by reverse osmosis (RO) using a vapor-trapping membrane composed of short hydrophobic nanopores and separates the salt water (feed) and the fresh water (permeate) on each side. The feed water is vaporized by applied pressure and the water vapor condenses on the permeate side accompanied by recovery of latent heat. A probabilistic model based on rarified gas conditions predicted 3-5 times larger mass flux by the proposed membrane than conventional RO membranes at temperatures in the range of 30-50C. To realize the short hydrophobic nanopores, gold was deposited at the entrance of alumina pores followed by SAM formation. The fraction of leaking pores was confirmed to be less than 0.2% using a calcium ion indicator (Fluo-4). Finally, a microfluidic flow cell was fabricated for characterizing the transport properties of the membranes. The authors would like to thank the King Fahd University of Petroleum and Minerals in Dhahran, Saudi Arabia, for funding the research reported in this paper through the Center for Clean Water and Clean Energy at MIT and KFUPM.

  5. Effect of conical nanopore diameter on ion current rectification.

    Science.gov (United States)

    Kovarik, Michelle L; Zhou, Kaimeng; Jacobson, Stephen C

    2009-12-10

    Asymmetric nanoscale conduits, such as conical track-etch pores, rectify ion current due to surface charge effects. To date, most data concerning this phenomenon have been obtained for small nanopores with diameters comparable to the electrical double layer thickness. Here, we systematically evaluate rectification for nanopores in poly(ethylene terephthalate) membranes with tip diameters of 10, 35, 85, and 380 nm. Current-voltage behavior is determined for buffer concentrations from 1 mM to 1 M and pHs 3.4 and 6.7. In general, ion current rectification increases with decreasing tip diameter, with decreasing ionic strength, and at higher pH. Surface charge contributes to increased pore conductivities compared to bulk buffer conductivities, though double layer overlap is not necessary for rectification to occur. Interestingly, the 35 nm pore exhibits a maximum rectification ratio for the 0.01 M buffer at pH 6.7, and the 380 nm pores exhibit nearly diodelike current-voltage curves when initially etched and strong rectification after the ion current has stabilized.

  6. Enhanced microcontact printing of proteins on nanoporous silica surface

    Science.gov (United States)

    Blinka, Ellen; Loeffler, Kathryn; Hu, Ye; Gopal, Ashwini; Hoshino, Kazunori; Lin, Kevin; Liu, Xuewu; Ferrari, Mauro; Zhang, John X. J.

    2010-10-01

    We demonstrate porous silica surface modification, combined with microcontact printing, as an effective method for enhanced protein patterning and adsorption on arbitrary surfaces. Compared to conventional chemical treatments, this approach offers scalability and long-term device stability without requiring complex chemical activation. Two chemical surface treatments using functionalization with the commonly used 3-aminopropyltriethoxysilane (APTES) and glutaraldehyde (GA) were compared with the nanoporous silica surface on the basis of protein adsorption. The deposited thickness and uniformity of porous silica films were evaluated for fluorescein isothiocyanate (FITC)-labeled rabbit immunoglobulin G (R-IgG) protein printed onto the substrates via patterned polydimethlysiloxane (PDMS) stamps. A more complete transfer of proteins was observed on porous silica substrates compared to chemically functionalized substrates. A comparison of different pore sizes (4-6 nm) and porous silica thicknesses (96-200 nm) indicates that porous silica with 4 nm diameter, 57% porosity and a thickness of 96 nm provided a suitable environment for complete transfer of R-IgG proteins. Both fluorescence microscopy and atomic force microscopy (AFM) were used for protein layer characterizations. A porous silica layer is biocompatible, providing a favorable transfer medium with minimal damage to the proteins. A patterned immunoassay microchip was developed to demonstrate the retained protein function after printing on nanoporous surfaces, which enables printable and robust immunoassay detection for point-of-care applications.

  7. New Graphene Form of Nanoporous Monolith for Excellent Energy Storage.

    Science.gov (United States)

    Bi, Hui; Lin, Tianquan; Xu, Feng; Tang, Yufeng; Liu, Zhanqiang; Huang, Fuqiang

    2016-01-13

    Extraordinary tubular graphene cellular material of a tetrahedrally connected covalent structure was very recently discovered as a new supermaterial with ultralight, ultrastiff, superelastic, and excellent conductive characteristics, but no high specific surface area will keep it from any next-generation energy storage applications. Herein, we prepare another new graphene monolith of mesoporous graphene-filled tubes instead of hollow tubes in the reported cellular structure. This graphene nanoporous monolith is also composed of covalently bonded carbon network possessing high specific surface area of ∼1590 m(2) g(-1) and electrical conductivity of ∼32 S cm(-1), superior to graphene aerogels and porous graphene forms self-assembled by graphene oxide. This 3D graphene monolith can support over 10 000 times its own weight, significantly superior to CNT and graphene cellular materials with a similar density. Furthermore, pseudocapacitance-active functional groups are introduced into the new nanoporous graphene monolith as an electrode material in electrochemical capacitors. Surprisingly, the electrode of 3D mesoporous graphene has a specific capacitance of 303 F g(-1) and maintains over 98% retention after 10 000 cycles, belonging to the list for the best carbon-based active materials. The macroscopic mesoporous graphene monolith suggests the great potential as an electrode for supercapacitors in energy storage areas.

  8. Mobility and carrier density in nanoporous indium tin oxide films

    Energy Technology Data Exchange (ETDEWEB)

    Weissbon, Jaqueline; Gondorf, Andreas; Geller, Martin; Lorke, Axel [Fakultaet fuer Physik and CeNIDE, Universitaet Duisburg-Essen, D-47048 Duisburg (Germany); Inhester, Martina; Prodi-Schwab, Anna; Adam, Dieter [Evonik Degussa GmbH, D-45772 Marl (Germany)

    2011-07-01

    Indium tin oxide (ITO) has become an indispensable material for a range of electronic devices. It is transparent in the entire visible range and electrically conducting, hence, a well suited material for transparent electrodes. An interesting possibility to realize transparent, conducting films without the use of vacuum techniques is the printing of dispersions containing ITO nanoparticles. We study here the charge carrier concentration and mobility of various nanoporous indium tin oxide (ITO) films, using Hall measurements and optical spectroscopy. For the carrier density inside the particles (2-4 . 10{sup 20} cm{sup -3}), the results of these complementary measurement techniques are in good agreement with each other and suggest that even in highly porous materials the common equations for the Hall resistance can be applied. However, for the mobilities in these layers the results differ very strongly: from 50 (cm{sup 2})/(Vs) in optical spectroscopy (which is comparable to bulk ITO) to 0.4 (cm{sup 2})/(Vs) in Hall measurements.This suggests that the mobility for electrical transport in nanoporous ITO films is strongly suppressed by scattering at interparticle boundaries.

  9. Atomically dispersed Pd catalysts in graphyne nanopore: formation and reactivity

    Science.gov (United States)

    Gu, Yongbing; Chen, Xianlang; Cao, Yongyong; Zhuang, Guilin; Zhong, Xing; Wang, Jianguo

    2017-07-01

    The formation of single-atom noble metal catalysts on carbon materials remains a challenge due to the weak interaction between metals and pristine carbon. By means of density functional theory (DFT) calculations, it is found that the atomically dispersed Pd in graphyne nanopore is much more stable than that of relative Pd clusters. The large diffusion barrier of Pd from the most stable hollow site to the bridge site confirms the kinetic stability of such structures. While CO adsorption causes the pulling of Pd from graphyne nanopore due to the low diffusion barrier, based on DFT calculations, which can be further confirmed by ab initio molecular dynamic simulations. Finally, CO oxidation on the reconstruction of Pd@graphyne exhibits an energy barrier of 0.62 eV in the rate-limiting step through the Langmuir-Hinshelwood mechanism. After the reaction, the catalyst can be restored to the original atomically dispersed state again. This study shows graphyne is an excellent support for an atomically dispersed or single-metal catalyst.

  10. Enhanced microcontact printing of proteins on nanoporous silica surface.

    Science.gov (United States)

    Blinka, Ellen; Loeffler, Kathryn; Hu, Ye; Gopal, Ashwini; Hoshino, Kazunori; Lin, Kevin; Liu, Xuewu; Ferrari, Mauro; Zhang, John X J

    2010-10-15

    We demonstrate porous silica surface modification, combined with microcontact printing, as an effective method for enhanced protein patterning and adsorption on arbitrary surfaces. Compared to conventional chemical treatments, this approach offers scalability and long-term device stability without requiring complex chemical activation. Two chemical surface treatments using functionalization with the commonly used 3-aminopropyltriethoxysilane (APTES) and glutaraldehyde (GA) were compared with the nanoporous silica surface on the basis of protein adsorption. The deposited thickness and uniformity of porous silica films were evaluated for fluorescein isothiocyanate (FITC)-labeled rabbit immunoglobulin G (R-IgG) protein printed onto the substrates via patterned polydimethlysiloxane (PDMS) stamps. A more complete transfer of proteins was observed on porous silica substrates compared to chemically functionalized substrates. A comparison of different pore sizes (4-6 nm) and porous silica thicknesses (96-200 nm) indicates that porous silica with 4 nm diameter, 57% porosity and a thickness of 96 nm provided a suitable environment for complete transfer of R-IgG proteins. Both fluorescence microscopy and atomic force microscopy (AFM) were used for protein layer characterizations. A porous silica layer is biocompatible, providing a favorable transfer medium with minimal damage to the proteins. A patterned immunoassay microchip was developed to demonstrate the retained protein function after printing on nanoporous surfaces, which enables printable and robust immunoassay detection for point-of-care applications.

  11. Bacteria repelling on highly-ordered alumina-nanopore structures

    Science.gov (United States)

    Kim, Sunghan; Zhou, Yan; Cirillo, Jeffrey D.; Polycarpou, Andreas A.; Liang, Hong

    2015-04-01

    Bacteria introduce diseases and infections to humans by their adherence to biomaterials, such as implants and surgical tools. Cell desorption is an effective step to reduce such damage. Here, we report mechanisms of bacteria desorption. An alumina nanopore structure (ANS) with pore size of 35 nm, 55 nm, 70 nm, and 80 nm was used as substrate to grow Escherichia coli (E. coli) cells. A bacteria repelling experimental method was developed to quantitatively evaluate the area percentage of adherent bacterial cells that represent the nature of cell adhesion as well as desorption. Results showed that there were two crucial parameters: contact angle and contact area that affect the adhesion/desorption. The cells were found to be more easily repelled when the contact angle increased. The area percentage of adherent bacterial cells decreased with the decrease in the contact area of a cell on ANS. This means that cell accessibility on ANS depends on the contact area. This research reveals the effectiveness of the nanopored structures in repelling cells.

  12. Energy behaviour for DNA translocation through graphene nanopores.

    Science.gov (United States)

    Alshehri, Mansoor H; Cox, Barry J; Hill, James M

    2015-12-21

    Nanoparticles have considerable promise for many applications in electronics, energy storage, bioscience and biotechnologies. Here we use applied mathematical modelling to exploit the basic principles of mechanics and the 6-12 Lennard-Jones potential function together with the continuum approach, which assumes that a discrete atomic structure can be replaced by an average constant atomic surface density of atoms that is assumed to be smeared over each molecule. We identify a circular hole in a graphene sheet as a nanopore and we consider the molecular interaction energy for both single-strand and double-strand DNA molecules assumed to move through the circular hole in a graphene sheet to determine the radius b of the hole that gives the minimum energy. By minimizing the interaction energy, we observe that the single-strand DNA and double-strand DNA molecules penetrate through a graphene nanopore when the pore radii b> 7.8Å and b> 12.7Å, respectively. Our results can be adopted to offer new applications in the atomic surface processes and electronic sensing.

  13. Stepwise Nanopore Evolution in One-Dimensional Nanostructures

    KAUST Repository

    Choi, Jang Wook

    2010-04-14

    We report that established simple lithium (Li) ion battery cycles can be used to produce nanopores inside various useful one-dimensional (1D) nanostructures such as zinc oxide, silicon, and silver nanowires. Moreover, porosities of these 1D nanomaterials can be controlled in a stepwise manner by the number of Li-battery cycles. Subsequent pore characterization at the end of each cycle allows us to obtain detailed snapshots of the distinct pore evolution properties in each material due to their different atomic diffusion rates and types of chemical bonds. Also, this stepwise characterization led us to the first observation of pore size increases during cycling, which can be interpreted as a similar phenomenon to Ostwald ripening in analogous nanoparticle cases. Finally, we take advantage of the unique combination of nanoporosity and 1D materials and demonstrate nanoporous silicon nanowires (poSiNWs) as excellent supercapacitor (SC) electrodes in high power operations compared to existing devices with activated carbon. © 2010 American Chemical Society.

  14. Determination of Polycyclic Aromatic Hydrocarbons in Water Using Nanoporous Material Prepared from Waste Avian Egg Shell

    Directory of Open Access Journals (Sweden)

    Abdulmumin A. Nuhu

    2012-01-01

    Full Text Available For the first time a biocompatible calcium carbonate vateritic polymorph was recrystallized from eggshell waste and its application for the extraction of polycyclic aromatic hydrocarbons in water samples was demonstrated. This nanoporous calcium carbonate was used as sorbent in dispersive micro-solid-phase extraction method. In this approach 50 mg of the calcium carbonate material having about 25 nm pores was placed in a 5 mL of water sample and ultrasonicated for 30 min. The cloudy sample was centrifuged at 13500 rpm for 2 min. The aqueous layer was then discarded and the CaCO3 material was dabbed dry with a lint-free tissue. The analytes were then desorbed with 100 μL of dichloromethane by ultrasonication for 5 min. Finally, the extract was analyzed by gas chromatography flame ionization detector. Experimental parameters affecting the extraction recoveries were optimized. Using optimum extraction conditions, calibration curves were linear with correlation coefficients of 0.9853 to 0.9973 over the concentration range of 0.05 to 30 ng/mL. This method showed a detection limit as low as 0.004 ng/mL (at signal-to-noise ratio of 3. Performance of the dispersive micro-solid-phase extraction was compared with a previously optimized solid-phase extraction technique. The developed method displayed good extraction recoveries (85 ± 8–110 ± 4% with high enhancement factors (388–1433-fold and good repeatability (% RSD < 13 and involved the use of minimal solvents. Analysis of seawater from Dammam Port revealed the presence of the analytes at concentrations between 0.15±0.01 and 13.43±1.54 ng/mL.

  15. Exploring Transduction Mechanisms of Protein Transduction Domains (PTDs in Living Cells Utilizing Single-Quantum Dot Tracking (SQT Technology

    Directory of Open Access Journals (Sweden)

    Yasuhiro Suzuki

    2012-01-01

    Full Text Available Specific protein domains known as protein transduction domains (PTDs can permeate cell membranes and deliver proteins or bioactive materials into living cells. Various approaches have been applied for improving their transduction efficacy. It is, therefore, crucial to clarify the entry mechanisms and to identify the rate-limiting steps. Because of technical limitations for imaging PTD behavior on cells with conventional fluorescent-dyes, how PTDs enter the cells has been a topic of much debate. Utilizing quantum dots (QDs, we recently tracked the behavior of PTD that was derived from HIV-1 Tat (TatP in living cells at the single-molecule level with 7-nm special precision. In this review article, we initially summarize the controversy on TatP entry mechanisms; thereafter, we will focus on our recent findings on single-TatP-QD tracking (SQT, to identify the major sequential steps of intracellular delivery in living cells and to discuss how SQT can easily provide direct information on TatP entry mechanisms. As a primer for SQT study, we also discuss the latest findings on single particle tracking of various molecules on the plasma membrane. Finally, we discuss the problems of QDs and the challenges for the future in utilizing currently available QD probes for SQT. In conclusion, direct identification of the rate-limiting steps of PTD entry with SQT should dramatically improve the methods for enhancing transduction efficiency.

  16. Nanoporous Insulating Oxide Deionization Device Having Asymmetric Electrodes and Method of Use Thereof

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A nanoporous insulating oxide deionization device, method of manufacture and method of use thereof for deionizing a water supply (such as a hard water supply), for...

  17. Scan-rate-dependent ion current rectification and rectification inversion in charged conical nanopores.

    Science.gov (United States)

    Momotenko, Dmitry; Girault, Hubert H

    2011-09-21

    Herein we report a theoretical study of diode-like behavior of negatively charged (e.g., glass or silica) nanopores at different potential scan rates (1-1000 V·s(-1)). Finite element simulations were used to determine current-voltage characteristics of conical nanopores at various electrolyte concentrations. This study demonstrates that significant changes in rectification behavior can be observed at high scan rates because the mass transport of ionic species appears sluggish on the time scale of the voltage scan. In particular, it explains the influence of the potential scan rate on the nanopore rectifying properties in the cases of classical rectification, rectification inversion, and the "transition" rectification domain where the rectification direction in the nanopore could be modulated according to the applied scan rate.

  18. Asymmetric ion track nanopores for sensor technology. Reconstruction of pore profile from conductometric measurements

    Science.gov (United States)

    Apel, Pavel Yu; Blonskaya, Irina V.; Orelovitch, Oleg L.; Sartowska, Bozena A.; Spohr, Reimar

    2012-06-01

    We reconstruct the profile of asymmetric ion track nanopores from an algorithm developed for conductometric measurements of symmetric nanopores. The validity of the reconstruction is supported by FESEM observations. Our analysis reveals that asymmetric pores fabricated by one-sided etching are funnel-like and not conical. The analysis provides the constriction diameter and the pore profile as a function of etching time. The reconstruction of the pore profile defines the starting conditions of asymmetric nanopores at breakthrough. The deviation from the conical shape is most pronounced at the pore tip. This critical zone dominates transport properties relevant to ion conductance, selectivity, current rectification, resistive pulse sensing and biosensors. The classical cone approximation used until now underestimates the tip diameter by a factor of two. As transport processes in nanopores depend in a highly nonlinear way on the constriction diameter the presented reconstruction must be taken into account when studying ionic and molecular transport processes in asymmetric pores.

  19. Nanoporous Activated Carbon Derived from Rice Husk for High Performance Supercapacitor

    Directory of Open Access Journals (Sweden)

    Huaxing Xu

    2014-01-01

    Full Text Available Nanoporous activated carbon material was produced from the waste rice husks (RHs by precarbonizing RHs and activating with KOH. The morphology, structure, and specific surface area were investigated. The nanoporous carbon has the average pore size of 2.2 nm and high specific area of 2523.4 m2 g−1. The specific capacitance of the nanoporous carbon is calculated to be 250 F g−1 at the current density of 1 A g−1 and remains 80% for 198 F g−1 at the current density of 20 A g−1. The nanoporous carbon electrode exhibits long-term cycle life and could keep stable capacitance till 10,000 cycles. The consistently high specific capacitance, rate capacity, and long-term cycle life ability makes it a potential candidate as electrode material for supercapacitor.

  20. Sodium Dodecyl Sulfate (SDS-Loaded Nanoporous Polymer as Anti-Biofilm Surface Coating Material

    Directory of Open Access Journals (Sweden)

    Sokol Ndoni

    2013-02-01

    Full Text Available Biofilms cause extensive damage to industrial settings. Thus, it is important to improve the existing techniques and develop new strategies to prevent bacterial biofilm formation. In the present study, we have prepared nanoporous polymer films from a self-assembled 1,2-polybutadiene-b-polydimethylsiloxane (1,2-PB-b-PDMS block copolymer via chemical cross-linking of the 1,2-PB block followed by quantitative removal of the PDMS block. Sodium dodecyl sulfate (SDS was loaded into the nanoporous 1,2-PB from aqueous solution. The SDS-loaded nanoporous polymer films were shown to block bacterial attachment in short-term (3 h and significantly reduce biofilm formation in long-term (1 week by gram-negative bacterium Escherichia coli. Tuning the thickness or surface morphology of the nanoporous polymer films allowed to extent the anti-biofilm capability.

  1. Water desalination with a single-layer MoS2 nanopore

    Science.gov (United States)

    Heiranian, Mohammad; Farimani, Amir Barati; Aluru, Narayana R.

    2015-10-01

    Efficient desalination of water continues to be a problem facing the society. Advances in nanotechnology have led to the development of a variety of nanoporous membranes for water purification. Here we show, by performing molecular dynamics simulations, that a nanopore in a single-layer molybdenum disulfide can effectively reject ions and allow transport of water at a high rate. More than 88% of ions are rejected by membranes having pore areas ranging from 20 to 60 Å2. Water flux is found to be two to five orders of magnitude greater than that of other known nanoporous membranes. Pore chemistry is shown to play a significant role in modulating the water flux. Pores with only molybdenum atoms on their edges lead to higher fluxes, which are ~70% greater than that of graphene nanopores. These observations are explained by permeation coefficients, energy barriers, water density and velocity distributions in the pores.

  2. Influence of adsorption thermodynamics on guest diffusivities in nanoporous crystalline materials

    NARCIS (Netherlands)

    R. Krishna; J.M. van Baten

    2013-01-01

    Published experimental data, underpinned by molecular simulations, are used to highlight the strong influence of adsorption thermodynamics on diffusivities of guest molecules inside ordered nanoporous crystalline materials such as zeolites, metal-organic frameworks (MOFs), and zeolitic imidazolate f

  3. Using Focused Electron Beams to Drill Straight Nanopores on a Membrane

    Directory of Open Access Journals (Sweden)

    Yung-Cheng Wang

    2014-08-01

    Full Text Available A high-resolution focused electron beam is used for the fabrication of metal nanostructures and devices with insulating membranes by nanosculpting metal films. This top-down focused electron beam drilling method uses the controlled ablation of materials to produce nanoscale devices with near-atomic precision of order. Using the proposed procedure, nano-drilling is not directly realized through the aperture, but by using a focused electron beam to burn away the solvent. Recent studies have investigated silicon nitride nanopores with an hourglass profile and silica nanopores with a pyramid-shaped cross-section, but electronic drilling in these approaches failed to produce straight nanopores. A method is proposed to improve the membranes’ thermal conductivity to rapidly produce straight nanopores, and is experimentally confirmed and has significant potential for use in nano-sensors or nano-devices.

  4. Research on fabrication and properties of nanoporous GaN epilayers

    Institute of Scientific and Technical Information of China (English)

    WANG Xiaolong; YU Guanghui; WANG Xinzhong; LIN Chaotong; LEI Benliang; QI Ming; NOUET Gérard; RUTERANA Pierre; CHEN Jun

    2006-01-01

    Gallium nitride (GaN) epilayers with nanopore arrays were fabricated by inductive coupled plasma (ICP) etching using anodic aluminum oxide (AAO) as mask.Nanoporous AAO templates were formed by anodizing the Al films deposited on GaN epilayers.The diameter of the perforations in the AAO masks could be easily controlled by tuning the technique parameters of AAO fabrication process.Cl2/Ar and Cl2/He were employed as etching gas.Scanning electron microscopy (SEM) analysis shows that vertical nanoporous arrays with uniform distribution can directly be transferred from AAO masks to GaN films in some proper conditions.Photoluminescence (PL) spectra, X-ray diffraction (XRD) and Raman spectroscopy were applied to assess properties of the nanoporous GaN films with different average pore diameters and interpore distances.

  5. Nanoporous carbon tunable resistor/transistor and methods of production thereof

    Energy Technology Data Exchange (ETDEWEB)

    Biener, Juergen; Baumann, Theodore F; Dasgupta, Subho; Hahn, Horst

    2014-04-22

    In one embodiment, a tunable resistor/transistor includes a porous material that is electrically coupled between a source electrode and a drain electrode, wherein the porous material acts as an active channel, an electrolyte solution saturating the active channel, the electrolyte solution being adapted for altering an electrical resistance of the active channel based on an applied electrochemical potential, wherein the active channel comprises nanoporous carbon arranged in a three-dimensional structure. In another embodiment, a method for forming the tunable resistor/transistor includes forming a source electrode, forming a drain electrode, and forming a monolithic nanoporous carbon material that acts as an active channel and selectively couples the source electrode to the drain electrode electrically. In any embodiment, the electrolyte solution saturating the nanoporous carbon active channel is adapted for altering an electrical resistance of the nanoporous carbon active channel based on an applied electrochemical potential.

  6. Nanoporous carbon tunable resistor/transistor and methods of production thereof

    Science.gov (United States)

    Biener, Juergen; Baumann, Theodore F; Dasgupta, Subho; Hahn, Horst

    2014-04-22

    In one embodiment, a tunable resistor/transistor includes a porous material that is electrically coupled between a source electrode and a drain electrode, wherein the porous material acts as an active channel, an electrolyte solution saturating the active channel, the electrolyte solution being adapted for altering an electrical resistance of the active channel based on an applied electrochemical potential, wherein the active channel comprises nanoporous carbon arranged in a three-dimensional structure. In another embodiment, a method for forming the tunable resistor/transistor includes forming a source electrode, forming a drain electrode, and forming a monolithic nanoporous carbon material that acts as an active channel and selectively couples the source electrode to the drain electrode electrically. In any embodiment, the electrolyte solution saturating the nanoporous carbon active channel is adapted for altering an electrical resistance of the nanoporous carbon active channel based on an applied electrochemical potential.

  7. Electrochemistry at the edge of a single graphene layer in a nanopore

    DEFF Research Database (Denmark)

    Banerjee, Sutanuka; Shim, Jeong; Rivera, J.;

    2013-01-01

    We study the electrochemistry of single layer graphene edges using a nanopore-based structure consisting of stacked graphene and AlO dielectric layers. Nanopores, with diameters ranging from 5 to 20 nm, are formed by an electron beam sculpting process on the stacked layers. This leads to a unique...... edge structure which, along with the atomically thin nature of the embedded graphene electrode, demonstrates electrochemical current densities as high as 1.2 × 10 A/cm. The graphene edge embedded structure offers a unique capability to study the electrochemical exchange at an individual graphene edge......, isolated from the basal plane electrochemical activity. We also report ionic current modulation in the nanopore by biasing the embedded graphene terminal with respect to the electrodes in the fluid. The high electrochemical specific current density for a graphene nanopore-based device can have many...

  8. Nanoporous SiO2 thin films made by atomic layer deposition and atomic etching

    Science.gov (United States)

    Ghazaryan, Lilit; Kley, E.-Bernhard; Tünnermann, Andreas; Szeghalmi, Adriana

    2016-06-01

    A new route to prepare nanoporous SiO2 films by mixing atomic-layer-deposited alumina and silica in an Å-scale is presented. The selective removal of Al2O3 from the composites using wet chemical etching with phosphoric acid resulted in nanoporous thin SiO2 layers. A diffusion-controlled dissolution mechanism is identified whereby an interesting reorganization of the residual SiO2 is observed. The atomic scale oxide mixing is decisive in attaining and tailoring the film porosity. The porosity and the refractive index of nanoporous silica films were tailored from 9% to 69% and from 1.40 to 1.13, respectively. The nanoporous silica was successfully employed as antireflection coatings and as diffusion membranes to encapsulate nanostructures.

  9. Surface Modification of Nanoporous 1,2-Polybutadiene by Atom Transfer Radical Polymerization or Click Chemistry

    DEFF Research Database (Denmark)

    Guo, Fengxiao; Jankova Atanasova, Katja; Schulte, Lars;

    2010-01-01

    ATRP-grafting of hydrophilic polyacrylates and click of MPEG, the originally hydrophobic samples transformed into hydrophilic nanoporous materials. The successful modification was confirmed by infrared spectroscopy, contact angle measurements and measurements of spontaneous water uptake, while...

  10. The DØ detector

    Science.gov (United States)

    Abachi, S.; Abolins, M.; Acharya, B. S.; Adam, I.; Ahn, S.; Aihara, H.; Alvarez, G.; Alves, G. A.; Amos, N.; Anderson, W.; Antipov, Yu.; Aronson, S. H.; Astur, R.; Avery, R. E.; Baden, A.; Balderston, J.; Baldin, B.; Bantly, J.; Barasch, E.; Bartlett, J. F.; Bazizi, K.; Behnke, T.; Bezzubov, V.; Bhat, P. C.; Blazey, G.; Blessing, S.; Boehnlein, A.; Borcherding, F.; Borders, J.; Bozko, N.; Brandt, A.; Brock, R.; Bross, A.; Buchholz, D.; Burtovoy, V.; Butler, J. M.; Callot, O.; Chakraborty, D.; Chekulaev, S.; Chen, J.; Chen, L.-P.; Chen, W.; Choudhary, B. C.; Christenson, J. H.; Claes, D.; Clark, A. R.; Cobau, W. G.; Cochran, J.; Cooper, W. E.; Cretsinger, C.; Cullen-Vidal, D.; Cummings, M.; Cutts, D.; Dahl, O. I.; Daniels, B.; De, K.; Demarteau, M.; Denisenko, K.; Denisenko, N.; Denisov, D.; Denisov, S.; Dharmaratna, W.; Diehl, H. T.; Diesburg, M.; Dixon, R.; Draper, P.; Ducros, Y.; Durston-Johnson, S.; Eartly, D.; Eberhard, P. H.; Edmunds, D.; Efimov, A.; Ellison, J.; Elvira, V. D.; Engelmann, R.; Eroshin, O.; Evdokimov, V.; Fahey, S.; Fanourakis, G.; Fatyga, M.; Featherly, J.; Feher, S.; Fein, D.; Ferbel, T.; Finley, D.; Finocchiaro, G.; Fisk, H. E.; Flattum, E.; Forden, G. E.; Fortner, M.; Franzini, P.; Fuess, S.; Gallas, E.; Gao, C. S.; Geld, T. L.; Genser, K.; Gerber, C. E.; Gibbard, B.; Glebov, V.; Glicenstein, J. F.; Gobbi, B.; Goforth, M.; Good, M. L.; Goozen, F.; Gordon, H.; Graf, N.; Grannis, P. D.; Green, D. R.; Green, J.; Greenlee, H.; Grossman, N.; Grudberg, P.; Guida, J. A.; Guida, J. M.; Guryn, W.; Hadley, N. J.; Haggerty, H.; Hagopian, S.; Hagopian, V.; Hall, R. E.; Hansen, S.; Hauptman, J.; Hedin, D.; Heinson, A. P.; Heintz, U.; Heuring, T.; Hirosky, R.; Hodel, K.; Hoftun, J. S.; Hubbard, J. R.; Huehn, T.; Huson, R.; Igarashi, S.; Ito, A. S.; James, E.; Jiang, J.; Johns, K.; Johnson, C. R.; Johnson, M.; Jonckheere, A.; Jones, M.; Jöstlein, H.; Jung, C. K.; Kahn, S.; Kanekal, S.; Kernan, A.; Kerth, L.; Kirunin, A.; Klatchko, A.; Klima, B.; Klochkov, B.; Klopfenstein, C.; Klyukhin, V.; Kochetkov, V.; Kohli, J. M.; Kononenko, W.; Kotcher, J.; Kotov, I.; Kourlas, J.; Kozelov, A.; Kozlovsky, E.; Krafczyk, G.; Krempetz, K.; Krishnaswamy, M. R.; Kroon, P.; Krzywdzinski, S.; Kunori, S.; Lami, S.; Landsberg, G.; Lanou, R. E.; Laurens, P.; Lee-Franzini, J.; Li, J.; Li, R.; Li-Demarteau, Q. Z.; Lima, J. G. R.; Linn, S. L.; Linnemann, J.; Lipton, R.; Liu, Y.-C.; Lloyd-Owen, D.; Lobkowicz, F.; Loken, S. C.; Lokos, S.; Lueking, L.; Maciel, A. K. A.; Madaras, R. J.; Madden, R.; Malamud, E.; Mangeot, Ph.; Manning, I.; Mansoulié, B.; Manzella, V.; Mao, H.-S.; Marcin, M.; Markosky, L.; Marshall, T.; Martin, H. J.; Martin, M. I.; Martin, P. S.; Marx, M.; May, B.; Mayorov, A.; McCarthy, R.; McKinley, J.; Mendoza, D.; Meng, X.-C.; Merritt, K. W.; Milder, A.; Mincer, A.; Mondal, N. K.; Montag, M.; Mooney, P.; Mudan, M.; Mulholland, G. T.; Murphy, C.; Murphy, C. T.; Nang, F.; Narain, M.; Narasimham, V. S.; Neal, H. A.; Nemethy, P.; Nešić, D.; Ng, K. K.; Norman, D.; Oesch, L.; Oguri, V.; Oltman, E.; Oshima, N.; Owen, D.; Pang, M.; Para, A.; Park, C. H.; Partridge, R.; Paterno, M.; Peryshkin, A.; Peters, M.; Pi, B.; Piekarz, H.; Pischalnikov, Yu.; Pizzuto, D.; Pluquet, A.; Podstavkov, V.; Pope, B. G.; Prosper, H. B.; Protopopescu, S.; Que, Y.-K.; Quintas, P. Z.; Rahal-Callot, G.; Raja, R.; Rajagopalan, S.; Rao, M. V. S.; Rasmussen, L.; Read, A. L.; Regan, T.; Repond, S.; Riadovikov, V.; Rijssenbeek, M.; Roe, N. A.; Rubinov, P.; Rutherfoord, J.; Santoro, A.; Sawyer, L.; Schamberger, R. D.; Sculli, J.; Selove, W.; Shea, M.; Shkurenkov, A.; Shupe, M.; Singh, J. B.; Sirotenko, V.; Smart, W.; Smith, A.; Smith, D.; Smith, R. P.; Snow, G. R.; Snyder, S.; Sosebee, M.; Souza, M.; Spadafora, A. L.; Stampke, S.; Stephens, R.; Stevenson, M. L.; Stewart, D.; Stocker, F.; Stoyanova, D.; Stredde, H.; Streets, K.; Strovink, M.; Suhanov, A.; Taketani, A.; Tartaglia, M.; Taylor, J. D.; Teiger, J.; Theodosiou, G.; Thompson, J.; Tisserant, S.; Trippe, T. G.; Tuts, P. M.; Van Berg, R.; Vaz, M.; Vishwanath, P. R.; Volkov, A.; Vorobiev, A.; Wahl, H. D.; Wang, D.-C.; Wang, L.-Z.; Weerts, H.; Wenzel, W. A.; White, A.; White, J. T.; Wightman, J.; Willis, S.; Wimpenny, S. J.; Wolf, Z.; Womersley, J.; Wood, D. R.; Xia, Y.; Xiao, D.; Xie, P.; Xu, H.; Yamada, R.; Yamin, P.; Yanagisawa, C.; Yang, J.; Yang, M.-J.; Yoshikawa, C.; Youssef, S.; Yu, J.; Zeller, R.; Zhang, S.; Zhou, Y. H.; Zhu, Q.; Zhu, Y.-S.; Zieminska, D.; Zieminski, A.; Zinchenko, A.; Zylberstejn, A.; DØ Collaboration

    1994-01-01

    The DØ detector is a large general purpose detector for the study of short-distance phenomena in high energy antiproton-proton collisions, now in operation at the Fermilab Tevatron collider. The detector focusses upon the detection of electrons, muons, jets and missing transverse momentum. We describe the design and performance of the major elements of the detector, including the tracking chambers, transition radiation detector, liquid argon calorimetry and muon detection. The associated electronics, triggering systems and data acquisition systems are presented. The global mechanical, high voltage, and experiment monitoring and control systems which support the detector are described. We also discuss the design and implementation of software and software support systems that are specific to DØ.

  11. Noble Gas Detectors

    CERN Document Server

    Aprile, Elena; Bolozdynya, Alexander I; Doke, Tadayoshi

    2006-01-01

    This book discusses the physical properties of noble fluids, operational principles of detectors based on these media, and the best technical solutions to the design of these detectors. Essential attention is given to detector technology: purification methods and monitoring of purity, information readout methods, electronics, detection of hard ultra-violet light emission, selection of materials, cryogenics etc.The book is mostly addressed to physicists and graduate students involved in the preparation of fundamental next generation experiments, nuclear engineers developing instrumentation

  12. ATLAS inner detector performance

    CERN Document Server

    Gadomski, S

    2001-01-01

    The ATLAS Inner Detector consists of three subsystems using different tracking detector technologies: silicon pixels, silicon strips and straw tubes. The combination gives ATLAS a robust, hermetic and efficient tracking system, able to reconstruct tracks at the highest foreseen LHC luminosities. The inner detector provides vertex and momentum measurements, electron identification and some $K/\\pi$ separation. Since last year the beam pipe of ATLAS was changed, causing a redesign of the first tracking layer and a deterioration of the impact parameter resolutions.

  13. Highly efficient shrinkage of inverted-pyramid silicon nanopores by plasma-enhanced chemical vapor deposition technology

    Science.gov (United States)

    Wang, Yifan; Deng, Tao; Chen, Qi; Liang, Feng; Liu, Zewen

    2016-06-01

    Solid-state nanopore-based analysis systems are currently one of the most attractive and promising platforms in sensing fields. This work presents a highly efficient method to shrink inverted-pyramid silicon nanopores using plasma-enhanced chemical vapor deposition (PECVD) technology by the deposition of SiN x onto the surface of the nanopore. The contraction of the inverted-pyramid silicon nanopores when subjected to the PECVD process has been modeled and carefully analyzed, and the modeling data are in good agreement with the experimental results within a specific PECVD shrinkage period (˜0-600 s). Silicon nanopores within a 50-400 nm size range contract to sub-10 nm dimensions. Additionally, the inner structure of the nanopores after the PECVD process has been analyzed by focused ion beam cutting process. The results show an inner structure morphology change from inverted-pyramid to hourglass, which may enhance the spatial resolution of sensing devices.

  14. Highly efficient shrinkage of inverted-pyramid silicon nanopores by plasma-enhanced chemical vapor deposition technology.

    Science.gov (United States)

    Wang, Yifan; Deng, Tao; Chen, Qi; Liang, Feng; Liu, Zewen

    2016-06-24

    Solid-state nanopore-based analysis systems are currently one of the most attractive and promising platforms in sensing fields. This work presents a highly efficient method to shrink inverted-pyramid silicon nanopores using plasma-enhanced chemical vapor deposition (PECVD) technology by the deposition of SiN x onto the surface of the nanopore. The contraction of the inverted-pyramid silicon nanopores when subjected to the PECVD process has been modeled and carefully analyzed, and the modeling data are in good agreement with the experimental results within a specific PECVD shrinkage period (∼0-600 s). Silicon nanopores within a 50-400 nm size range contract to sub-10 nm dimensions. Additionally, the inner structure of the nanopores after the PECVD process has been analyzed by focused ion beam cutting process. The results show an inner structure morphology change from inverted-pyramid to hourglass, which may enhance the spatial resolution of sensing devices.

  15. Toward high permeability, selectivity and controllability of water desalination with FePc nanopores.

    Science.gov (United States)

    Deng, Qingming; Pan, Jun; Yin, Xiaohui; Wang, Xiaofeng; Zhao, Lina; Kang, Seung-gu; Jimenez-Cruz, Camilo A; Zhou, Ruhong; Li, Jingyuan

    2016-03-21

    Nanoporous materials exhibit promising potential in water transportation applications, especially in ocean water desalination. It is highly desired to have great permeability, selectivity and controllability in the desalination performance of these nanopores. However, it is still a challenge to achieve all three features in one material or device. Here, we demonstrate efficient and controllable water desalination with a nanoporous 2D Fe phthalocyanine (FePc) membrane using molecular dynamics simulations. We find the FePc membrane not only conducts fast water flow, but it also suppresses ion permeation. The selectivity is attributed to a mechanism distinct from the traditional steric exclusion: cations are excluded due to electrostatic repulsion, whereas anions can be trapped in the nanopore and induce the reorganization of ions in the vicinity of the nanopore, which in turn creates a tendency for the trapped anions to move back into the saline reservoir. More interestingly, we find such mechanism is largely due to the sufficiently strong electrostatic interaction of the charged nanopore region with ions and is not restricted to the FePc nanopore. In addition, the number of protonated nitrogen atoms in FePc pores can be modulated by adjusting the pH value of the solution. The extent of the anion occupancy can thus be regulated, giving rise to control of the water flow. Taken together, great permeability, selectivity and controllability can be achieved with this nanosheet system. Moreover, our study suggests there is an alternative mechanism of water desalination which may be realized by intrinsically nanoporous materials such as FePc membranes.

  16. Hierarchical structural nanopore arrays fabricated by pre-patterning aluminum using nanosphere lithography.

    Science.gov (United States)

    Wang, Xinnan; Xu, Shuping; Cong, Ming; Li, Haibo; Gu, Yuejiao; Xu, Weiqing

    2012-04-10

    A highly ordered and hierarchical structural nanopore array is fabricated via anodizing a pre-patterned aluminum foil under an optimized voltage. A pre-patterned hexagonal nanoindentation array on an aluminum substrate is prepared via the nanosphere lithography method. This pattern leads to an elaborate nanochannel structure with seven nanopores in each nanoindentation after anodization treatment. The structure achieved in our study is new, interesting, and likely to be applied in photonic devices.

  17. Rapid manufacturing of low-noise membranes for nanopore sensors by trans-chip illumination lithography.

    Science.gov (United States)

    Janssen, Xander J A; Jonsson, Magnus P; Plesa, Calin; Soni, Gautam V; Dekker, Cees; Dekker, Nynke H

    2012-11-30

    In recent years, the concept of nanopore sensing has matured from a proof-of-principle method to a widespread, versatile technique for the study of biomolecular properties and interactions. While traditional nanopore devices based on a nanopore in a single layer membrane supported on a silicon chip can be rapidly fabricated using standard microfabrication methods, chips with additional insulating layers beyond the membrane region can provide significantly lower noise levels, but at the expense of requiring more costly and time-consuming fabrication steps. Here we present a novel fabrication protocol that overcomes this issue by enabling rapid and reproducible manufacturing of low-noise membranes for nanopore experiments. The fabrication protocol, termed trans-chip illumination lithography, is based on illuminating a membrane-containing wafer from its backside such that a photoresist (applied on the wafer's top side) is exposed exclusively in the membrane regions. Trans-chip illumination lithography permits the local modification of membrane regions and hence the fabrication of nanopore chips containing locally patterned insulating layers. This is achieved while maintaining a well-defined area containing a single thin membrane for nanopore drilling. The trans-chip illumination lithography method achieves this without relying on separate masks, thereby eliminating time-consuming alignment steps as well as the need for a mask aligner. Using the presented approach, we demonstrate rapid and reproducible fabrication of nanopore chips that contain small (12 μm × 12 μm) free-standing silicon nitride membranes surrounded by insulating layers. The electrical noise characteristics of these nanopore chips are shown to be superior to those of simpler designs without insulating layers and comparable in quality to more complex designs that are more challenging to fabricate.

  18. Methane storage in nanoporous material at supercritical temperature over a wide range of pressures

    OpenAIRE

    Keliu Wu; Zhangxin Chen; Xiangfang Li; Xiaohu Dong

    2016-01-01

    The methane storage behavior in nanoporous material is significantly different from that of a bulk phase, and has a fundamental role in methane extraction from shale and its storage for vehicular applications. Here we show that the behavior and mechanisms of the methane storage are mainly dominated by the ratio of the interaction between methane molecules and nanopores walls to the methane intermolecular interaction, and a geometric constraint. By linking the macroscopic properties of the met...

  19. Capture, unfolding, and detection of individual tRNA molecules using a nanopore device

    Directory of Open Access Journals (Sweden)

    Andrew M Smith

    2015-06-01

    Full Text Available Transfer RNAs (tRNA are the most common RNA molecules in cells and have critical roles as both translators of the genetic code and regulators of protein synthesis. As such, numerous methods have focused on studying tRNA abundance and regulation, with the most widely used methods being RNA-seq and microarrays. Though revolutionary to transcriptomics, these assays are limited by an inability to encode tRNA modifications in the requisite cDNA. These modifications are abundant in tRNA and critical to their function. Here we describe proof-of-concept experiments where individual tRNA molecules are examined as linear strands using a biological nanopore. This method utilizes an enzymatically ligated synthetic DNA adapter to concentrate tRNA at the lipid bilayer of the nanopore device and efficiently denature individual tRNA molecules as they are pulled through the α-hemolysin (α-HL nanopore. Additionally, the DNA adapter provides a loading site for ϕ29 DNA polymerase (ϕ29 DNAP, which acts as a brake on the translocating tRNA. This increases the dwell time of adapted tRNA in the nanopore, allowing us to identify the region of the nanopore signal that is produced by the translocating tRNA itself. Using adapter-modified E. coli tRNAfMet and tRNALys, we show that the nanopore signal during controlled translocation is dependent on the identity of the tRNA. This confirms that adapter-modified tRNA can translocate end-to-end through nanopores and provides the foundation for future work in direct sequencing of individual transfer RNA with a nanopore-based device.

  20. The Effect of Pore Size of Nanoporous Material for Lithium Ion Batteries

    Institute of Scientific and Technical Information of China (English)

    L.J.Fu; G.J.Wang; Y.P.Wu

    2007-01-01

    1 Results 3-dimensionally ordered mesoporous materials have been used as electrode materials for lithium ion batteries to improve their electrochemical performance by decreasing the polarization during cycling.Our synthesize nanoporous TiO2 particles without substrate present enhanced cycle performance compared with that of previous reports[1]. Here we report our results referring to that nanoporous TiO2 materials with different pore sizes exhibit different electrochemical performance.The detail procedu...