WorldWideScience

Sample records for multicomponent assembly pathway

  1. Rational design of self-assembly pathways for complex multicomponent structures

    Science.gov (United States)

    Jacobs, William M.; Reinhardt, Aleks; Frenkel, Daan

    2015-01-01

    The field of complex self-assembly is moving toward the design of multiparticle structures consisting of thousands of distinct building blocks. To exploit the potential benefits of structures with such “addressable complexity,” we need to understand the factors that optimize the yield and the kinetics of self-assembly. Here we use a simple theoretical method to explain the key features responsible for the unexpected success of DNA-brick experiments, which are currently the only demonstration of reliable self-assembly with such a large number of components. Simulations confirm that our theory accurately predicts the narrow temperature window in which error-free assembly can occur. Even more strikingly, our theory predicts that correct assembly of the complete structure may require a time-dependent experimental protocol. Furthermore, we predict that low coordination numbers result in nonclassical nucleation behavior, which we find to be essential for achieving optimal nucleation kinetics under mild growth conditions. We also show that, rather surprisingly, the use of heterogeneous bond energies improves the nucleation kinetics and in fact appears to be necessary for assembling certain intricate 3D structures. This observation makes it possible to sculpt nucleation pathways by tuning the distribution of interaction strengths. These insights not only suggest how to improve the design of structures based on DNA bricks, but also point the way toward the creation of a much wider class of chemical or colloidal structures with addressable complexity. PMID:25941388

  2. Complex precipitation pathways in multicomponent alloys

    Energy Technology Data Exchange (ETDEWEB)

    Clouet, Emmanuel; Nastar, Maylise [Service de Recherches de Metallurgie Physique, CEA/Saclay, 91191 Gif-sur-Yvette (France); Lae, Ludovic; Deschamps, Alexis [LTPCM/ENSEEG, UMR CNRS 5614, Domaine Universitaire, BP 75, 38402 St Martin d' Heres (France); Epicier, Thierry [Groupe d' Etudes de Metallurgie Physique et de Physique des Materiaux, UMR CNRS 5510, INSA, 69621 Villeurbanne (France); Lefebvre, Williams [Groupe de Physique des Materiaux, UMR CNRS 6634, Universite de Rouen, 76801 Saint Etienne du Rouvray (France)

    2006-07-01

    One usual way to strengthen a metal is to add alloying elements and to control the size and the density of the precipitates obtained. However, precipitation in multicomponent alloys can take complex pathways depending on the relative diffusivity of solute atoms and on the relative driving forces involved. In Al - Zr - Sc alloys, atomic simulations based on first-principle calculations combined with various complementary experimental approaches working at different scales reveal a strongly inhomogeneous structure of the precipitates: owing to the much faster diffusivity of Sc compared with Zr in the solid solution, and to the absence of Zr and Sc diffusion inside the precipitates, the precipitate core is mostly Sc-rich, whereas the external shell is Zr-rich. This explains previous observations of an enhanced nucleation rate in Al - Zr - Sc alloys compared with binary Al - Sc alloys, along with much higher resistance to Ostwald ripening, two features of the utmost importance in the field of light high-strength materials. (authors)

  3. Micro-/nanostructured multicomponent molecular materials: design, assembly, and functionality.

    Science.gov (United States)

    Yan, Dongpeng

    2015-03-23

    Molecule-based micro-/nanomaterials have attracted considerable attention because their properties can vary greatly from the corresponding macro-sized bulk systems. Recently, the construction of multicomponent molecular solids based on crystal engineering principles has emerged as a promising alternative way to develop micro-/nanomaterials. Unlike single-component materials, the resulting multicomponent systems offer the advantages of tunable composition, and adjustable molecular arrangement, and intermolecular interactions within their solid states. The study of these materials also supplies insight into how the crystal structure, molecular components, and micro-/nanoscale effects can influence the performance of molecular materials. In this review, we describe recent advances and current directions in the assembly and applications of crystalline multicomponent micro-/nanostructures. Firstly, the design strategies for multicomponent systems based on molecular recognition and crystal engineering principles are introduced. Attention is then focused on the methods of fabrication of low-dimensional multicomponent micro-/nanostructures. Their new applications are also outlined. Finally, we briefly discuss perspectives for the further development of these molecular crystalline micro-/nanomaterials.

  4. Hierarchical silica particles by dynamic multicomponent assembly

    DEFF Research Database (Denmark)

    Wu, Z. W.; Hu, Q. Y.; Pang, J. B.

    2005-01-01

    Abstract: Aerosol-assisted assembly of mesoporous silica particles with hierarchically controllable pore structure has been prepared using cetyltrimethylammonium bromide (CTAB) and poly(propylene oxide) (PPO, H[OCH(CH3)CH2],OH) as co-templates. Addition of the hydrophobic PPO significantly influe......-silicate assembling system was discussed. The mesostructure of these particles was characterized by transmission electron microscope (TEM), scanning electron microscope (SEM), X-ray diffraction (XRD), and N-2 sorption. (c) 2005 Elsevier Inc. All rights reserved....

  5. Predicting self-assembled patterns on spheres with multicomponent coatings.

    Science.gov (United States)

    Edlund, Erik; Lindgren, Oskar; Jacobi, Martin Nilsson

    2014-05-01

    Patchy colloids are promising candidates for building blocks in directed self-assembly, but large scale synthesis of colloids with controlled surface patterns remains challenging. One potential fabrication method is to self-assemble the surface patterns themselves, allowing complex morphologies to organize spontaneously. For this approach to be competitive, prediction and control of the pattern formation process are necessary. However, structure formation in many-body systems is fundamentally hard to understand, and new theoretical methods are needed. Here we present a theory for self-assembling pattern formation in multi-component systems on the surfaces of colloidal particles, formulated as an analytic technique that predicts morphologies directly from the interactions in an effective model. As a demonstration we formulate an isotropic model of alkanethiols on gold, a suggested system for directed self-assembly, and predict its morphologies and transitions as a function of the interaction parameters.

  6. Directing folding pathways for multi-component DNA origami nanostructures with complex topology

    Science.gov (United States)

    Marras, A. E.; Zhou, L.; Kolliopoulos, V.; Su, H.-J.; Castro, C. E.

    2016-05-01

    Molecular self-assembly has become a well-established technique to design complex nanostructures and hierarchical mesoscale assemblies. The typical approach is to design binding complementarity into nucleotide or amino acid sequences to achieve the desired final geometry. However, with an increasing interest in dynamic nanodevices, the need to design structures with motion has necessitated the development of multi-component structures. While this has been achieved through hierarchical assembly of similar structural units, here we focus on the assembly of topologically complex structures, specifically with concentric components, where post-folding assembly is not feasible. We exploit the ability to direct folding pathways to program the sequence of assembly and present a novel approach of designing the strand topology of intermediate folding states to program the topology of the final structure, in this case a DNA origami slider structure that functions much like a piston-cylinder assembly in an engine. The ability to program the sequence and control orientation and topology of multi-component DNA origami nanostructures provides a foundation for a new class of structures with internal and external moving parts and complex scaffold topology. Furthermore, this work provides critical insight to guide the design of intermediate states along a DNA origami folding pathway and to further understand the details of DNA origami self-assembly to more broadly control folding states and landscapes.

  7. APPLICATIONS OF MULTICOMPONENT ASSEMBLY PROCESSES TO THE FACILE SYNTHESES OF DIVERSELY FUNCTIONALIZED NITROGEN HETEROCYCLES.

    Science.gov (United States)

    Donald, James R; Granger, Brett A; Hardy, Simon; Sahn, James J; Martin, Stephen F

    2012-01-01

    Several multicomponent assembly processes have been developed for the synthesis of intermediates that may be elaborated by a variety of cyclizations to generate a diverse array of highly functionalized heterocycles from readily-available starting materials. The overall approach enables the efficient preparation of libraries of small molecules derived from fused, privileged scaffolds.

  8. Stereoselective multicomponent assembly of enantiopure oxazolopiperidines and -azepines.

    Science.gov (United States)

    Zill, Nicolas; Schoenfelder, Angèle; Girard, Nicolas; Taddei, Maurizio; Mann, André

    2012-03-02

    A multicomponent reaction (MCR) based on a cyclohydrocarbonylation (CHC) driven by hydroformylation was set up toward the efficient diastereoselective preparation of oxazolopiperidines (4a-e) and -azepines (7a-d). The bicyclic oxazolidines were obtained from chiral N-alkenylamino alcohols via transient cyclic iminium intermediates that underwent an intramolecular cyclization from the appendant oxygen. On the basis of a series of different experimental conditions, the diastereocontrol observed during the formation of the oxazolidines is best explained by the stereoelectronic effect induced by an A(1,3)-strain in a common cyclic iminium intermediate (A). This new sequence is suitable for diversity oriented syntheses, allowing the preparation of enantiopure (S)- and (R)-coniceine in five steps from commercially available material.

  9. Uracil Excision for Assembly of Complex Pathways

    DEFF Research Database (Denmark)

    Cavaleiro, Mafalda; Nielsen, Morten Thrane; Kim, Se Hyeuk

    2015-01-01

    inexpensive technologies available. Here, we describe four different protocols for uracil excision-based DNA editing: one for simple manipulations such as site-directed mutagenesis, one for plasmid-based multigene assembly in Escherichia coli, one for one-step assembly and integration of single or multiple...... genes into the genome, and a standardized assembly pipeline using benchmarked oligonucleotides for pathway assembly and multigene expression optimization....

  10. Accurate design of co-assembling multi-component protein nanomaterials.

    Science.gov (United States)

    King, Neil P; Bale, Jacob B; Sheffler, William; McNamara, Dan E; Gonen, Shane; Gonen, Tamir; Yeates, Todd O; Baker, David

    2014-06-05

    The self-assembly of proteins into highly ordered nanoscale architectures is a hallmark of biological systems. The sophisticated functions of these molecular machines have inspired the development of methods to engineer self-assembling protein nanostructures; however, the design of multi-component protein nanomaterials with high accuracy remains an outstanding challenge. Here we report a computational method for designing protein nanomaterials in which multiple copies of two distinct subunits co-assemble into a specific architecture. We use the method to design five 24-subunit cage-like protein nanomaterials in two distinct symmetric architectures and experimentally demonstrate that their structures are in close agreement with the computational design models. The accuracy of the method and the number and variety of two-component materials that it makes accessible suggest a route to the construction of functional protein nanomaterials tailored to specific applications.

  11. NMR diffusion spectroscopy for the characterization of multicomponent hydrogen-bonded assemblies in solution

    NARCIS (Netherlands)

    Timmerman, Peter; Weidmann, Jean-Luc; Jolliffe, Katrina A.; Prins, Leonard J.; Reinhoudt, David N.; Shinkai, Seiji; Frish, Limor; Cohen, Yoram

    2000-01-01

    NMR diffusion measurements on 10 different multicomponent hydrogen-bonded assemblies, viz. the three single rosettes SR1–SR3 ( 13· 2a3, 13· 2b3, 13· 2c3) the double rosettes DR1–DR5 ( 3a3· 2a6, 3b3· 2b6, 3c3· 2a6, 3d3· 2a6, 3e3· 2a6), and DR6 ( 4a3· 16), and the tetrarosette TR ( 53· 2a12) are descr

  12. Nanosystem Self-Assembly Pathways Discovered via All-Atom Multiscale Analysis

    CERN Document Server

    Pankavich, Stephen

    2014-01-01

    We consider the self-assembly of composite structures from a group of nanocomponents, each consisting of particles within an $N$-atom system. Self-assembly pathways and rates for nanocomposites are derived via a multiscale analysis of the classical Liouville equation. From a reduced statistical framework, rigorous stochastic equations for population levels of beginning, intermediate, and final aggregates are also derived. It is shown that the definition of an assembly type is a self-consistency criterion that must strike a balance between precision and the need for population levels to be slowly varying relative to the time scale of atomic motion. The deductive multiscale approach is complemented by a qualitative notion of multicomponent association and the ensemble of exact atomic-level configurations consistent with them. In processes such as viral self-assembly from proteins and RNA or DNA, there are many possible intermediates, so that it is usually difficult to predict the most efficient assembly pathway...

  13. Predicting Chiral Nanostructures, Lattices and Superlattices in Complex Multicomponent Nanoparticle Self-Assembly

    KAUST Repository

    Hur, Kahyun

    2012-06-13

    "Bottom up" type nanoparticle (NP) self-assembly is expected to provide facile routes to nanostructured materials for various, for example, energy related, applications. Despite progress in simulations and theories, structure prediction of self-assembled materials beyond simple model systems remains challenging. Here we utilize a field theory approach for predicting nanostructure of complex and multicomponent hybrid systems with multiple types of short- and long-range interactions. We propose design criteria for controlling a range of NP based nanomaterial structures. In good agreement with recent experiments, the theory predicts that ABC triblock terpolymer directed assemblies with ligand-stabilized NPs can lead to chiral NP network structures. Furthermore, we predict that long-range Coulomb interactions between NPs leading to simple NP lattices, when applied to NP/block copolymer (BCP) assemblies, induce NP superlattice formation within the phase separated BCP nanostructure, a strategy not yet realized experimentally. We expect such superlattices to be of increasing interest to communities involved in research on, for example, energy generation and storage, metamaterials, as well as microelectronics and information storage. © 2012 American Chemical Society.

  14. Multicomponent assembly of fluorescent-tag functionalized ligands in metal-organic frameworks for sensing explosives.

    Science.gov (United States)

    Gole, Bappaditya; Bar, Arun Kumar; Mukherjee, Partha Sarathi

    2014-10-01

    Detection of trace amounts of explosive materials is significantly important for security concerns and pollution control. Four multicomponent metal-organic frameworks (MOFs-12, 13, 23, and 123) have been synthesized by employing ligands embedded with fluorescent tags. The multicomponent assembly of the ligands was utilized to acquire a diverse electronic behavior of the MOFs and the fluorescent tags were strategically chosen to enhance the electron density in the MOFs. The phase purity of the MOFs was established by PXRD, NMR spectroscopy, and finally by single-crystal XRD. Single-crystal structures of the MOFs-12 and 13 showed the formation of three-dimensional porous networks with the aromatic tags projecting inwardly into the pores. These electron-rich MOFs were utilized for detection of explosive nitroaromatic compounds (NACs) through fluorescence quenching with high selectivity and sensitivity. The rate of fluorescence quenching for all the MOFs follows the order of electron deficiency of the NACs. We also showed the detection of picric acid (PA) by luminescent MOFs is not always reliable and can be misleading. This attracts our attention to explore these MOFs for sensing picryl chloride (PC), which is as explosive as picric acid and used widely to prepare more stable explosives like 2,4,6-trinitroaniline from PA. Moreover, the recyclability and sensitivity studies indicated that these MOFs can be reused several times with parts per billion (ppb) levels of sensitivity towards PC and 2,4,6-trinitrotoluene (TNT).

  15. Assembly and Photocarrier Dynamics of Heterostructured Nanocomposite Photoanodes from Multicomponent Colloidal Nanocrystals.

    Science.gov (United States)

    Loiudice, Anna; Cooper, Jason K; Hess, Lucas H; Mattox, Tracy M; Sharp, Ian D; Buonsanti, R

    2015-11-11

    Multicomponent oxides and their heterostructures are rapidly emerging as promising light absorbers to drive oxidative chemistry. To fully exploit their functionality, precise tuning of their composition and structure is crucial. Here, we report a novel solution-based route to nanostructured bismuth vanadate (BiVO4) that facilitates the assembly of BiVO4/metal oxide (TiO2, WO3, and Al2O3) nanocomposites in which the morphology of the metal oxide building blocks is finely tailored. The combination of transient absorption spectroscopy-spanning from picoseconds to second time scales-and photoelectrochemical measurements reveals that the achieved structural tunability is key to understanding and directing charge separation, transport, and efficiency in these complex oxide heterostructured films.

  16. Structural and chemical control in assembly of multicomponent metal-organic coordination networks on a surface.

    Science.gov (United States)

    Shi, Ziliang; Lin, Nian

    2010-08-11

    Surface-supported supramolecular self-assembly has been used to generate multicomponent two-dimensional metal-organic coordination networks on a Au(111) surface. The networks consist of linker ligands of 4',4''''-(1,4-phenylene)bis(2,2':6',2''-terpyridine) and nodal ligands of 5,10,15,20-tetra(4-pyridyl)porphyrin that are connected by pyridine-Fe-terpyridine motifs. Scanning tunneling microscopy revealed the coexistence of two polymorphic types of network structures (rhombus and Kagome). Through control of the dosage of the constituent ligands, homogeneous structural phases were obtained selectively. In particular, the rhombus structure could be converted into the more complex and more open Kagome structure by inclusion of guest molecules. Finally, coordination networks providing structural and chemical homogeneity were realized by judiciously choosing the dosages of the constituent ligands and the chemical substitution of the porphyrin ligands.

  17. Programming biomolecular self-assembly pathways.

    Science.gov (United States)

    Yin, Peng; Choi, Harry M T; Calvert, Colby R; Pierce, Niles A

    2008-01-17

    In nature, self-assembling and disassembling complexes of proteins and nucleic acids bound to a variety of ligands perform intricate and diverse dynamic functions. In contrast, attempts to rationally encode structure and function into synthetic amino acid and nucleic acid sequences have largely focused on engineering molecules that self-assemble into prescribed target structures, rather than on engineering transient system dynamics. To design systems that perform dynamic functions without human intervention, it is necessary to encode within the biopolymer sequences the reaction pathways by which self-assembly occurs. Nucleic acids show promise as a design medium for engineering dynamic functions, including catalytic hybridization, triggered self-assembly and molecular computation. Here, we program diverse molecular self-assembly and disassembly pathways using a 'reaction graph' abstraction to specify complementarity relationships between modular domains in a versatile DNA hairpin motif. Molecular programs are executed for a variety of dynamic functions: catalytic formation of branched junctions, autocatalytic duplex formation by a cross-catalytic circuit, nucleated dendritic growth of a binary molecular 'tree', and autonomous locomotion of a bipedal walker.

  18. Microparticle Assembly Pathways on Lipid Membranes

    Science.gov (United States)

    van der Wel, Casper; Heinrich, Doris; Kraft, Daniela J.

    2017-09-01

    Understanding interactions between microparticles and lipid membranes is of increasing importance, especially for unraveling the influence of microplastics on our health and environment. Here, we study how a short-ranged adhesive force between microparticles and model lipid membranes causes membrane-mediated particle assembly. Using confocal microscopy, we observe the initial particle attachment to the membrane, then particle wrapping, and in rare cases spontaneous membrane tubulation. In the attached state, we measure that the particle mobility decreases by 26%. If multiple particles adhere to the same vesicle, their initial single-particle state determines their interactions and subsequent assembly pathways: 1) attached particles only aggregate when small adhesive vesicles are present in solution, 2) wrapped particles reversibly attract one another by membrane deformation, and 3) a combination of wrapped and attached particles form membrane-mediated dimers, which further assemble into a variety of complex structures. The experimental observation of distinct assembly pathways induced only by a short ranged membrane-particle adhesion, shows that a cellular cytoskeleton or other active components are not required for microparticle aggregation. We suggest that this membrane-mediated microparticle aggregation is a reason behind reported long retention times of polymer microparticles in organisms.

  19. Bacterial decolorization of textile dyes is an extracellular process requiring a multicomponent electron transfer pathway.

    Science.gov (United States)

    Brigé, Ann; Motte, Bart; Borloo, Jimmy; Buysschaert, Géraldine; Devreese, Bart; Van Beeumen, Jozef J

    2008-01-01

    Many studies have reported microorganisms as efficient biocatalysts for colour removal of dye-containing industrial wastewaters. We present the first comprehensive study to identify all molecular components involved in decolorization by bacterial cells. Mutants from the model organism Shewanella oneidensis MR-1, generated by random transposon and targeted insertional mutagenesis, were screened for defects in decolorization of an oxazine and diazo dye. We demonstrate that decolorization is an extracellular reduction process requiring a multicomponent electron transfer pathway that consists of cytoplasmic membrane, periplasmic and outer membrane components. The presence of melanin, a redox-active molecule excreted by S. oneidensis, was shown to enhance the dye reduction rates. Menaquinones and the cytochrome CymA are the crucial cytoplasmic membrane components of the pathway, which then branches off via a network of periplasmic cytochromes to three outer membrane cytochromes. The key proteins of this network are MtrA and OmcB in the periplasm and outer membrane respectively. A model of the complete dye reduction pathway is proposed in which the dye molecules are reduced by the outer membrane cytochromes either directly or indirectly via melanin.

  20. Illuminating the Reaction Pathways of Viromimetic Assembly

    Science.gov (United States)

    2017-01-01

    The coassembly of well-defined biological nanostructures relies on a delicate balance between attractive and repulsive interactions between biomolecular building blocks. Viral capsids are a prototypical example, where coat proteins exhibit not only self-interactions but also interact with the cargo they encapsulate. In nature, the balance between antagonistic and synergistic interactions has evolved to avoid kinetic trapping and polymorphism. To date, it has remained a major challenge to experimentally disentangle the complex kinetic reaction pathways that underlie successful coassembly of biomolecular building blocks in a noninvasive approach with high temporal resolution. Here we show how macromolecular force sensors, acting as a genome proxy, allow us to probe the pathways through which a viromimetic protein forms capsids. We uncover the complex multistage process of capsid assembly, which involves recruitment and complexation, followed by allosteric growth of the proteinaceous coat. Under certain conditions, the single-genome particles condense into capsids containing multiple copies of the template. Finally, we derive a theoretical model that quantitatively describes the kinetics of recruitment and growth. These results shed new light on the origins of the pathway complexity in biomolecular coassembly.

  1. Construction and engineering of large biochemical pathways via DNA assembler.

    Science.gov (United States)

    Shao, Zengyi; Zhao, Huimin

    2013-01-01

    DNA assembler enables rapid construction and engineering of biochemical pathways in a one-step fashion by exploitation of the in vivo homologous recombination mechanism in Saccharomyces cerevisiae. It has many applications in pathway engineering, metabolic engineering, combinatorial biology, and synthetic biology. Here we use two examples including the zeaxanthin biosynthetic pathway and the aureothin biosynthetic gene cluster to describe the key steps in the construction of pathways containing multiple genes using the DNA assembler approach. Methods for construct design, pathway assembly, pathway confirmation, and functional analysis are shown. The protocol for fine genetic modifications such as site-directed mutagenesis for engineering the aureothin gene cluster is also illustrated.

  2. The statistical mechanics of dynamic pathways to self-assembly.

    Science.gov (United States)

    Whitelam, Stephen; Jack, Robert L

    2015-04-01

    This review describes some important physical characteristics of the pathways (i.e., dynamical processes) by which molecular, nanoscale, and micrometer-scale self-assembly occurs. We highlight the existence of features of self-assembly pathways that are common to a wide range of physical systems, even though those systems may differ with respect to their microscopic details. We summarize some existing theoretical descriptions of self-assembly pathways and highlight areas-notably, the description of self-assembly pathways that occur far from equilibrium-that are likely to become increasingly important.

  3. Lewis acidic metal catalysed organic transformations by designed multi-component structures and assemblies

    Indian Academy of Sciences (India)

    Afsar Ali; Amit P Singh; Rajeev Gupta

    2010-05-01

    This paper presents the recent developments in designing multi-component structures including metal-organic frameworks containing Lewis acidic metal ions. The emphasis has been given to understand the design elements adopted to synthesize such structures bearing Lewis acidic metal ion. Further, few important Lewis acidic metal catalysed organic transformation reactions have been discussed demonstrating the importance of such materials for practical purposes.

  4. Dynamic pathways for viral capsid assembly

    OpenAIRE

    Hagan, Michael F.; Chandler, David

    2006-01-01

    We develop a class of models with which we simulate the assembly of particles into T1 capsid-like objects using Newtonian dynamics. By simulating assembly for many different values of system parameters, we vary the forces that drive assembly. For some ranges of parameters, assembly is facile, while for others, assembly is dynamically frustrated by kinetic traps corresponding to malformed or incompletely formed capsids. Our simulations sample many independent trajectories at various capsomer c...

  5. Assembly pathway of avian infectious laryngotracheitis virus.

    Science.gov (United States)

    Guo, P; Scholz, E; Turek, J; Nodgreen, R; Maloney, B

    1993-12-01

    Infectious laryngotracheitis virus (ILTV) is the causative agent of a highly contagious upper respiratory tract infection in chickens. At present, ILTV vaccines are not satisfactory because of development of a latent carrier status in vaccinated birds. Development of recombinant virus vaccines has been hampered by the limited information available on the molecular level and organization of this virus. We isolated 3 assembly intermediates, designated A, B, and C from ILTV-infected cells. Analysis of [3H]thymidine-and [35S]methionine-labeled particles, and electron microscopic studies indicated that particle A was the empty capsid, particle B was the procapsid containing scaffolding protein, and particle C was the DNA-filled capsid. The ILTV procapsids could only be found in the nucleus, which indicated that procapsids could not translocate through the nuclear membrane until they packaged the DNA. The DNA-filled capsids migrated through the nuclear membrane and obtained an envelope from the inner membrane of the nucleus. The enveloped particles then migrated through the lumen of the endoplasmic reticulum into vacuoles in the cytoplasm. Infective virions were isolated from within the infected cells, indicating that budding through the cytoplasmic membrane is not a necessary step in ILTV maturation. Abundant arrays composed of tubules about 45 to 50 nm wide were found in the cytoplasm of chicken embryonic liver cells about 30 to 38 hours after infection. Comparison of the assembly intermediates and the DNA packaging pathway of ILTV with that of bacteriophage pi 29 indicates that similarity exists.(ABSTRACT TRUNCATED AT 250 WORDS)

  6. Electronic Effects on Narcissistic Self-Sorting in Multicomponent Self-Assembly of Fe-Iminopyridine meso-Helicates.

    Science.gov (United States)

    Wiley, Calvin A; Holloway, Lauren R; Miller, Tabitha F; Lyon, Yana; Julian, Ryan R; Hooley, Richard J

    2016-10-03

    Small changes in the electron donating ability of coordinating groups have substantial effects on the multicomponent self-assembly of Fe (II)-iminopyridine-based meso-helicate complexes. Both the nature of the internal diamine core and the terminal formylpyridine reactants control the rate of the assembly process, the thermodynamic favorability of the meso-helicate products, and the selective incorporation of different aldehyde termini into the assembly. Steric congestion at the coordinating ligands can prevent assembly altogether, and favorable incorporation of electron-rich aldehyde termini is observed, even though the rate of reaction is accelerated by the use of electron-poor aldehyde reactants. NMR and electrospray ionization mass spectrometry analyses were employed to determine the synergistic nature of narcissistic self-sorting in this system, which depends on both the rigidity of the central core and the electronic donor ability of the aldehyde terminus. These experiments illustrate that significant control of self-sorting and self-assembly is possible upon extremely small variations in ligand structure, rigidity, and donor ability.

  7. A multi-component model of the developing retinocollicular pathway incorporating axonal and synaptic growth.

    Directory of Open Access Journals (Sweden)

    Keith B Godfrey

    2009-12-01

    Full Text Available During development, neurons extend axons to different brain areas and produce stereotypical patterns of connections. The mechanisms underlying this process have been intensively studied in the visual system, where retinal neurons form retinotopic maps in the thalamus and superior colliculus. The mechanisms active in map formation include molecular guidance cues, trophic factor release, spontaneous neural activity, spike-timing dependent plasticity (STDP, synapse creation and retraction, and axon growth, branching and retraction. To investigate how these mechanisms interact, a multi-component model of the developing retinocollicular pathway was produced based on phenomenological approximations of each of these mechanisms. Core assumptions of the model were that the probabilities of axonal branching and synaptic growth are highest where the combined influences of chemoaffinity and trophic factor cues are highest, and that activity-dependent release of trophic factors acts to stabilize synapses. Based on these behaviors, model axons produced morphologically realistic growth patterns and projected to retinotopically correct locations in the colliculus. Findings of the model include that STDP, gradient detection by axonal growth cones and lateral connectivity among collicular neurons were not necessary for refinement, and that the instructive cues for axonal growth appear to be mediated first by molecular guidance and then by neural activity. Although complex, the model appears to be insensitive to variations in how the component developmental mechanisms are implemented. Activity, molecular guidance and the growth and retraction of axons and synapses are common features of neural development, and the findings of this study may have relevance beyond organization in the retinocollicular pathway.

  8. Dynamic pathways for viral capsid assembly

    Energy Technology Data Exchange (ETDEWEB)

    Hagan, Michael F.; Chandler, David

    2006-02-09

    We develop a class of models with which we simulate the assembly of particles into T1 capsid-like objects using Newtonian dynamics. By simulating assembly for many different values of system parameters, we vary the forces that drive assembly. For some ranges of parameters, assembly is facile, while for others, assembly is dynamically frustrated by kinetic traps corresponding to malformed or incompletely formed capsids. Our simulations sample many independent trajectories at various capsomer concentrations, allowing for statistically meaningful conclusions. Depending on subunit (i.e., capsomer) geometries, successful assembly proceeds by several mechanisms involving binding of intermediates of various sizes. We discuss the relationship between these mechanisms and experimental evaluations of capsid assembly processes.

  9. Controlled perturbation of the thermodynamic equilibrium by microfluidic separation of porphyrin-based aggregates in a multi-component self-assembling system.

    Science.gov (United States)

    Helmich, Floris; Meijer, E W

    2013-03-04

    In a microfluidic H-cell, a multi-component self-assembled system is brought out-of-equilibrium by changing the bimodal composition of porphyrin stacks and pyridine-capped dimers. Driven by their different diffusivities, diffusion-controlled separation in methylcyclohexane reveals different compositions when detected in-line and off-line, which demonstrates the kinetic behaviour of this metastable system. The microfluidic technique also proves to be highly equipped to determine diffusion constants of the different assemblies.

  10. Uracil Excision for Assembly of Complex Pathways

    DEFF Research Database (Denmark)

    Cavaleiro, Mafalda; Nielsen, Morten Thrane; Kim, Se Hyeuk

    2015-01-01

    Despite decreasing prices on synthetic DNA constructs, higher-order assembly of PCR-generated DNA continues to be an important exercise in molecular and synthetic biology. Simplicity and robustness are attractive features met by the uracil excision DNA assembly method, which is one of the most in...

  11. Rigid Biopolymer Nanocrystal Systems for Controlling Multicomponent Nanoparticle Assembly and Orientation in Thin Film Solar Cells

    Energy Technology Data Exchange (ETDEWEB)

    Cha, Jennifer [Univ. of Colorado, Boulder, CO (United States)

    2016-10-31

    We have discovered techniques to synthesize well-defined DN conjugated nanostructures that are stable in a wide variety of conditions needed for DNA mediated assembly. Starting from this, we have shown that DNA can be used to control the assembly and integration of semiconductor nanocrystals into thin film devices that show photovoltaic effects.

  12. Multicomponent assembly of diverse pyrazin-2(1H)-one chemotypes.

    Science.gov (United States)

    Azuaje, Jhonny; El Maatougui, Abdelaziz; Pérez-Rubio, José M; Coelho, Alberto; Fernández, Franco; Sotelo, Eddy

    2013-05-03

    An expedient and concise Ugi-based approach for the rapid assembly of pyrazin-2(1H)-one-based frameworks has been developed. This convergent approach encompasses skeletal, functional and stereochemical diversity, exhibiting an unusually high bond-forming efficiency as well as high structure and step economies. The method involves the use of readily available commercial reagents and is an example of the reconciliation of structural complexity with operational simplicity in a time- and cost-effective manner.

  13. One-step multicomponent self-assembly of a first-generation Sierpiński triangle: from fractal design to chemical reality.

    Science.gov (United States)

    Sarkar, Rajarshi; Guo, Kai; Moorefield, Charles N; Saunders, Mary Jane; Wesdemiotis, Chrys; Newkome, George R

    2014-11-03

    A novel terpyridine-based architecture that mimics a first-generation Sierpiński triangle has been synthesized by multicomponent assembly and features tpy-Cd(II)-tpy connectivity (tpy=terpyridine). The key terpyridine ligands were synthesized by the Suzuki cross-coupling reaction. Mixing two different terpyridine-based ligands and Cd(II) in a precise stoichiometric ratio (1:1:3) produced the desired fractal architecture in near-quantitative yield. Characterization was accomplished by NMR spectroscopy, mass spectrometry, and transmission electron microscopy.

  14. PATHWAY ASSEMBLY ASSISTED BY COMPUTER: TEACHING ANAEROBIC GLYCOLYSIS

    Directory of Open Access Journals (Sweden)

    F. M Sarraipa

    2008-05-01

    Full Text Available The  knowledge on  metabolic pathways  is required in  the higher education courses on biological  field.  This  work  presents  a  computer assisted  approach for metabolic pathways self study, based  on their assembly, reaction-by-reaction.  Anaerobic glycolysis was used as a model.  The software was designed to users who have basic knowledge on enzymatic catalysis,  and  to be used with or without teacher’s help. Every reaction is detailed, and the student can move forward only after having assembled each reaction correctly. The software  contains a tutorial  to help users both  on its use, and  on the  correct assembly of each reaction.  The software was field tested  in the basics biochemistry disciplines to the students of Physical Education, Nursing, Medicine and Biology from the State University of Campinas  –  UNICAMP, and in the physiology discipline to the students of Physical Education from the Institute Adventist Sao Paulo – IASP. A database using MySQL was structured to collect data on the software using . Every action taken by the students were recorded. The statistical analysis showed that the number of tries decreases as the students move forward on the pathway assembly. The most difficult reaction besides the first one, were the ones that presented  pattern changes, for example, the sixth reaction was the  first oxidation-reduction reaction. In the first reaction the most frequent mistakes  were using the phosphohexose isomerase as enzyme or having forgotten to include ATP among the substrates. In the sixth reaction the most frequent mistakes was having forgotten to include NAD+ among the substrates. The recorded data analysis can be used by the teachers to give in their lectures, special attention to the reactions were the students made more mistakes.

  15. Folding outer membrane proteins independently of the β-barrel assembly machinery: an assembly pathway for multimeric complexes?

    Science.gov (United States)

    Huysmans, Gerard H M

    2016-06-15

    Since the discovery of the essential role of the β-barrel assembly machinery (BAM) for the membrane insertion of outer membrane proteins (OMPs) that are unrelated in sequence, members of this universally conserved family dominate discussions on OMP assembly in bacteria, mitochondria and chloroplasts. However, several multimeric bacterial OMPs assemble independently of the catalyzing BAM-component BamA. Recent progress on this alternative pathway is reviewed here, and a model for BAM-independent assembly for multimeric OMPs is proposed in which monomer delivery to the membrane and stable prepore formation are key steps towards productive membrane insertion.

  16. Role of Achiral Nucleobases in Multicomponent Chiral Self-Assembly: Purine-Triggered Helix and Chirality Transfer.

    Science.gov (United States)

    Deng, Ming; Zhang, Li; Jiang, Yuqian; Liu, Minghua

    2016-11-21

    Chiral self-assembly is a basic process in biological systems, where many chiral biomolecules such as amino acids and sugars play important roles. Achiral nucleobases usually covalently bond to saccharides and play a significant role in the formation of the double helix structure. However, it remains unclear how the achiral nucleobases can function in chiral self-assembly without the sugar modification. Herein, we have clarified that purine nucleobases could trigger N-(9-fluorenylmethox-ycarbonyl) (Fmoc)-protected glutamic acid to self-assemble into helical nanostructures. Moreover, the helical nanostructure could serve as a matrix and transfer the chirality to an achiral fluorescence probe, thioflavin T (ThT). Upon chirality transfer, the ThT showed not only supramolecular chirality but also circular polarized fluorescence (CPL). Without the nucleobase, the self-assembly processes cannot happen, thus providing an example where achiral molecules played an essential role in the expression and transfer of the chirality.

  17. Randomized BioBrick assembly: a novel DNA assembly method for randomizing and optimizing genetic circuits and metabolic pathways.

    Science.gov (United States)

    Sleight, Sean C; Sauro, Herbert M

    2013-09-20

    The optimization of genetic circuits and metabolic pathways often involves constructing various iterations of the same construct or using directed evolution to achieve the desired function. Alternatively, a method that randomizes individual parts in the same assembly reaction could be used for optimization by allowing for the ability to screen large numbers of individual clones expressing randomized circuits or pathways for optimal function. Here we describe a new assembly method to randomize genetic circuits and metabolic pathways from modular DNA fragments derived from PCR-amplified BioBricks. As a proof-of-principle for this method, we successfully assembled CMY (Cyan-Magenta-Yellow) three-gene circuits using Gibson Assembly that express CFP, RFP, and YFP with independently randomized promoters, ribosome binding sites, transcriptional terminators, and all parts randomized simultaneously. Sequencing results from 24 CMY circuits with various parts randomized show that 20/24 circuits are distinct and expression varies over a 200-fold range above background levels. We then adapted this method to randomize the same parts with enzyme coding sequences from the lycopene biosynthesis pathway instead of fluorescent proteins, designed to independently express each enzyme in the pathway from a different promoter. Lycopene production is improved using this randomization method by about 30% relative to the highest polycistronic-expressing pathway. These results demonstrate the potential of generating nearly 20,000 unique circuit or pathway combinations when three parts are permutated at each position in a three-gene circuit or pathway, and the methodology can likely be adapted to other circuits and pathways to maximize products of interest.

  18. A modular platform for one-step assembly of multi-component membrane systems by fusion of charged proteoliposomes

    Science.gov (United States)

    Ishmukhametov, Robert R.; Russell, Aidan N.; Berry, Richard M.

    2016-10-01

    An important goal in synthetic biology is the assembly of biomimetic cell-like structures, which combine multiple biological components in synthetic lipid vesicles. A key limiting assembly step is the incorporation of membrane proteins into the lipid bilayer of the vesicles. Here we present a simple method for delivery of membrane proteins into a lipid bilayer within 5 min. Fusogenic proteoliposomes, containing charged lipids and membrane proteins, fuse with oppositely charged bilayers, with no requirement for detergent or fusion-promoting proteins, and deliver large, fragile membrane protein complexes into the target bilayers. We demonstrate the feasibility of our method by assembling a minimal electron transport chain capable of adenosine triphosphate (ATP) synthesis, combining Escherichia coli F1Fo ATP-synthase and the primary proton pump bo3-oxidase, into synthetic lipid vesicles with sizes ranging from 100 nm to ~10 μm. This provides a platform for the combination of multiple sets of membrane protein complexes into cell-like artificial structures.

  19. Elucidating dominant pathways of the nano-particle self-assembly process.

    Science.gov (United States)

    Zeng, Xiangze; Li, Bin; Qiao, Qin; Zhu, Lizhe; Lu, Zhong-Yuan; Huang, Xuhui

    2016-09-14

    Self-assembly processes play a key role in the fabrication of functional nano-structures with widespread application in drug delivery and micro-reactors. In addition to the thermodynamics, the kinetics of the self-assembled nano-structures also play an important role in determining the formed structures. However, as the self-assembly process is often highly heterogeneous, systematic elucidation of the dominant kinetic pathways of self-assembly is challenging. Here, based on mass flow, we developed a new method for the construction of kinetic network models and applied it to identify the dominant kinetic pathways for the self-assembly of star-like block copolymers. We found that the dominant pathways are controlled by two competing kinetic parameters: the encounter time Te, characterizing the frequency of collision and the transition time Tt for the aggregate morphology change from rod to sphere. Interestingly, two distinct self-assembly mechanisms, diffusion of an individual copolymer into the aggregate core and membrane closure, both appear at different stages (with different values of Tt) of a single self-assembly process. In particular, the diffusion mechanism dominates the middle-sized semi-vesicle formation stage (with large Tt), while the membrane closure mechanism dominates the large-sized vesicle formation stage (with small Tt). Through the rational design of the hydrophibicity of the copolymer, we successfully tuned the transition time Tt and altered the dominant self-assembly pathways.

  20. Development of new multicomponent Sn–Ag–Cu–Bi lead-free solders for low-cost commercial electronic assembly

    Energy Technology Data Exchange (ETDEWEB)

    El-Daly, A.A., E-mail: dreldaly11@yahoo.com [Physics Department, Faculty of Science, Zagazig Univ., Zagazig (Egypt); Center of Nanotechnology, Zagazig Univ., Zagazig (Egypt); El-Taher, A.M. [Physics Department, Faculty of Science, Zagazig Univ., Zagazig (Egypt); Center of Nanotechnology, Zagazig Univ., Zagazig (Egypt); Gouda, S. [Physics Department, Faculty of Science, Zagazig Univ., Zagazig (Egypt)

    2015-04-05

    Highlights: • Small amounts of Bi have been added into Sn–1.5Ag–0.7Cu solder. • Bi reduced the undercooling and eutectic temperature of SAC257 solder. • Bi refined the microstructure and diminishes the nucleation rate of IMCs. • Bi increased the creep resistance and fracture lifetime of the solder. • Overall SAC properties can be improved adding not more than 3 wt.% Bi. - Abstract: Eutectic Sn–Ag–Cu (SAC) solder is one of the candidate alternatives to Sn–Pb-based solder alloys. The coupling effect of both minor alloying Bi addition and reducing the amount of Ag phase have been proposed as an important approach to optimize existing and to develop new SAC solders. Characteristics of new Sn–Ag–Cu–Bi solders were analyzed and compared with those of as-solidified Sn–1.5Ag–0.7Cu (SAC157) alloy. The results of differential scanning calorimetry (DSC) indicate significant reduction of both undercooling, eutectic temperature, solidus and liquidus temperatures with the addition of Bi into SAC(157) solder, although the pasty range remains the same or slightly increased. Moreover, SAC(157) solders containing Bi were found to have a higher creep resistance (126.1 times) than SAC(157) solder at the same stress level and testing temperature. The higher creep resistance was contributed by the solid solution and precipitations strengthen effects of Bi. The precipitation of these Bi atoms or particles can significantly refine the microstructure, blocks the movement of dislocations and increases the creep resistance of Bi-containing solders. The creep life time of plain SAC(157) alloy was extremely enlarged 23.7 times with the addition of 3 wt.% Bi. Constitutive Garofalo model of creep for both SAC(157) and Sn–Ag–Cu–Bi solders was assembled based on the experimental data.

  1. The sequential activation of the mitotic microtubule assembly pathways favors bipolar spindle formation

    Science.gov (United States)

    Cavazza, Tommaso; Malgaretti, Paolo; Vernos, Isabelle

    2016-01-01

    Centrosome maturation is the process by which the duplicated centrosomes recruit pericentriolar components and increase their microtubule nucleation activity before mitosis. The role of this process in cells entering mitosis has been mostly related to the separation of the duplicated centrosomes and thereby to the assembly of a bipolar spindle. However, spindles can form without centrosomes. In fact, all cells, whether they have centrosomes or not, rely on chromatin-driven microtubule assembly to form a spindle. To test whether the sequential activation of these microtubule assembly pathways, defined by centrosome maturation and nuclear envelope breakdown, plays any role in spindle assembly, we combined experiments in tissue culture cells and Xenopus laevis egg extracts with a mathematical model. We found that interfering with the sequential activation of the microtubule assembly pathways compromises bipolar spindle assembly in tissue culture cells but not in X. laevis egg extracts. Our data suggest a novel function for centrosome maturation that determines the contribution of the chromosomal microtubule assembly pathway and favors bipolar spindle formation in most animal cells in which tubulin is in limiting amounts. PMID:27489339

  2. Rapid Optimization of Engineered Metabolic Pathways with Serine Integrase Recombinational Assembly (SIRA).

    Science.gov (United States)

    Merrick, C A; Wardrope, C; Paget, J E; Colloms, S D; Rosser, S J

    2016-01-01

    Metabolic pathway engineering in microbial hosts for heterologous biosynthesis of commodity compounds and fine chemicals offers a cheaper, greener, and more reliable method of production than does chemical synthesis. However, engineering metabolic pathways within a microbe is a complicated process: levels of gene expression, protein stability, enzyme activity, and metabolic flux must be balanced for high productivity without compromising host cell viability. A major rate-limiting step in engineering microbes for optimum biosynthesis of a target compound is DNA assembly, as current methods can be cumbersome and costly. Serine integrase recombinational assembly (SIRA) is a rapid DNA assembly method that utilizes serine integrases, and is particularly applicable to rapid optimization of engineered metabolic pathways. Using six pairs of orthogonal attP and attB sites with different central dinucleotide sequences that follow SIRA design principles, we have demonstrated that ΦC31 integrase can be used to (1) insert a single piece of DNA into a substrate plasmid; (2) assemble three, four, and five DNA parts encoding the enzymes for functional metabolic pathways in a one-pot reaction; (3) generate combinatorial libraries of metabolic pathway constructs with varied ribosome binding site strengths or gene orders in a one-pot reaction; and (4) replace and add DNA parts within a construct through targeted postassembly modification. We explain the mechanism of SIRA and the principles behind designing a SIRA reaction. We also provide protocols for making SIRA reaction components and practical methods for applying SIRA to rapid optimization of metabolic pathways.

  3. Alternative Spliceosome Assembly Pathways Revealed by Single-Molecule Fluorescence Microscopy

    Directory of Open Access Journals (Sweden)

    Inna Shcherbakova

    2013-10-01

    Full Text Available Removal of introns from nascent transcripts (pre-mRNAs by the spliceosome is an essential step in eukaryotic gene expression. Previous studies have suggested that the earliest steps in spliceosome assembly in yeast are highly ordered and the stable recruitment of U1 small nuclear ribonucleoprotein particle (snRNP to the 5′ splice site necessarily precedes recruitment of U2 snRNP to the branch site to form the “prespliceosome.” Here, using colocalization single-molecule spectroscopy to follow initial spliceosome assembly on eight different S. cerevisiae pre-mRNAs, we demonstrate that active yeast spliceosomes can form by both U1-first and U2-first pathways. Both assembly pathways yield prespliceosomes functionally equivalent for subsequent U5⋅U4/U6 tri-snRNP recruitment and for intron excision. Although fractional flux through the two pathways varies on different introns, both are operational on all introns studied. Thus, multiple pathways exist for assembling functional spliceosomes. These observations provide insight into the mechanisms of cross-intron coordination of initial spliceosome assembly.

  4. Construction of energy transfer pathways self-assembled from DNA-templated stacks of anthracene.

    Science.gov (United States)

    Iwaura, Rika; Yui, Hiroharu; Someya, Yuu; Ohnishi-Kameyama, Mayumi

    2014-01-05

    We describe optical properties of anthracene stacks formed from single-component self-assembly of thymidylic acid-appended anthracene 2,6-bis[5-(3'-thymidylic acid)pentyloxy] anthracene (TACT) and the binary self-assembly of TACT and complementary 20-meric oligoadenylic acid (TACT/dA20) in an aqueous buffer. UV-Vis and emission spectra for the single-component self-assembly of TACT and the binary self-assembly of TACT/dA20 were very consistent with stacked acene moieties in both self-assemblies. Interestingly, time-resolved fluorescence spectra from anthracene stacks exhibited very different features of the single-component and binary self-assemblies. In the single-component self-assembly of TACT, a dynamic Stokes shift (DSS) and relatively short fluorescence lifetime (τ=0.35ns) observed at around 450nm suggested that the anthracene moieties were flexible. Moreover, a broad emission at 530nm suggested the formation of an excited dimer (excimer). In the binary self-assembly of TACT/dA20, we detected a broad, red-shifted emission component at 534nm with a lifetime (τ=0.4ns) shorter than that observed in the TACT single-component self-assembly. Combining these results with the emission spectrum of the binary self-assembly of TACT/5'-HEX dA20, we concluded that the energy transfer pathway was constructed by columnar anthracene stacks formed from the DNA-templated self-assembly of TACT.

  5. Structure and function of Enterotoxigenic Escherichia coli fimbriae from differing assembly pathways

    CERN Document Server

    Mortezaei, Narges; Shao, Paul P; Shirdel, Mariam; Singh, Bhupender; McVeigh, Annette; Uhlin, Bernt Eric; Savarino, Stephen J; Andersson, Magnus; Bullitt, Esther

    2014-01-01

    Pathogenic enterotoxigenic Escherichia coli (ETEC) are the major bacterial cause of diarrhea in young children in developing countries and in travelers, causing significant mortality in children. Adhesive fimbriae are a prime virulence factor for ETEC, initiating colonization of the small intestinal epithelium. Similar to other Gram-negative bacteria, ETEC express one or more diverse fimbriae, some assembled by the chaperone-usher pathway and others by the alternate chaperone pathway. Here we elucidate structural and biophysical aspects and adaptations of each fimbrial type to its respective host niche. CS20 fimbriae are compared to CFA/I fimbriae, which are two ETEC fimbriae assembled via different pathways, and to Pfimbriae from uropathogenic E. coli. Many fimbriae unwind from their native helical filament to an extended linear conformation under force, thereby sustaining adhesion by reducing load at the point of contact between the bacterium and the target cell. CFA/I fimbriae require the least force to un...

  6. Energetics, kinetics, and pathway of SNARE folding and assembly revealed by optical tweezers.

    Science.gov (United States)

    Zhang, Yongli

    2017-07-01

    Soluble N-ethylmaleimide-sensitive factor attachment protein receptors (SNAREs) are universal molecular engines that drive membrane fusion. Particularly, synaptic SNAREs mediate fast calcium-triggered fusion of neurotransmitter-containing vesicles with plasma membranes for synaptic transmission, the basis of all thought and action. During membrane fusion, complementary SNAREs located on two apposed membranes (often called t- and v-SNAREs) join together to assemble into a parallel four-helix bundle, releasing the energy to overcome the energy barrier for fusion. A long-standing hypothesis suggests that SNAREs act like a zipper to draw the two membranes into proximity and thereby force them to fuse. However, a quantitative test of this SNARE zippering hypothesis was hindered by difficulties to determine the energetics and kinetics of SNARE assembly and to identify the relevant folding intermediates. Here, we first review different approaches that have been applied to study SNARE assembly and then focus on high-resolution optical tweezers. We summarize the folding energies, kinetics, and pathways of both wild-type and mutant SNARE complexes derived from this new approach. These results show that synaptic SNAREs assemble in four distinct stages with different functions: slow N-terminal domain association initiates SNARE assembly; a middle domain suspends and controls SNARE assembly; and rapid sequential zippering of the C-terminal domain and the linker domain directly drive membrane fusion. In addition, the kinetics and pathway of the stagewise assembly are shared by other SNARE complexes. These measurements prove the SNARE zippering hypothesis and suggest new mechanisms for SNARE assembly regulated by other proteins. © 2017 The Protein Society.

  7. Patterning Multicomponent Polymer Thin Films via Dynamic Thermal Processing

    Science.gov (United States)

    Singh, Gurpreet

    Bottom-up patterning is gaining increased importance owing to the physical limitations and rising costs of top-down patterning. One example of bottom-up patterning is self-assembling polymer thin films. Although there are several pathways to facilitate polymer thin film self-assembly, this presentation will focus on dynamic thermal field based processes for patterning multicomponent polymer thin films. Dynamic thermal field processing is an attractive roll­to­roll (R2R) amenable directed self­assembly (DSA) method for molecular level organization of multicomponent polymer systems such as block copolymer thin films over large areas without requiring guiding templates. The talk will first outline how parameters such as magnitude of the temperature gradient, velocity of annealing, thermal expansion, and molecular weight of the polymer can be optimized to finely tune the morphology of the block copolymer thin films and also elucidate their associated physical mechanisms. The second part of the talk will outline application of dynamic thermal field processes for fabricating functional nanomaterials and discuss the recent advancements achieved using these processes.

  8. Assembly of a novel biosynthetic pathway for production of the plant flavonoid fisetin in Escherichia coli

    DEFF Research Database (Denmark)

    Stahlhut, Steen Gustav; Siedler, Solvej; Malla, Sailesh

    2015-01-01

    Plant secondary metabolites are an underutilized pool of bioactive molecules for applications in the food, pharma and nutritional industries. One such molecule is fisetin, which is present in many fruits and vegetables and has several potential health benefits, including anti-cancer, anti......-viral and anti-aging activity. Moreover, fisetin has recently been shown to prevent Alzheimer׳s disease in mice and to prevent complications associated with diabetes type I. Thus far the biosynthetic pathway of fisetin in plants remains elusive. Here, we present the heterologous assembly of a novel fisetin...... biosynthetic pathway and establish E. coli as a microbial platform strain for the production of fisetin and related flavonols....

  9. Identifying the assembly pathway of cyanophage inside the marine bacterium using electron cryo-tomography

    Directory of Open Access Journals (Sweden)

    Wei Dai

    2014-01-01

    Full Text Available Advances in electron cryo-tomography open up a new avenue to visualize the 3-D internal structure of a single bacterium before and after its infection by bacteriophages in its native environment, without using chemical fixatives, fluorescent dyes or negative stains. Such direct observation reveals the presence of assembly intermediates of the bacteriophage and thus allows us to map out the maturation pathway of the bacteriophage inside its host.

  10. Identifying the assembly pathway of cyanophage inside the marine bacterium using electron cryo-tomography.

    Science.gov (United States)

    Dai, Wei; Schmid, Michael F; King, Jonathan A; Chiu, Wah

    2014-06-01

    Advances in electron cryo-tomography open up a new avenue to visualize the 3-D internal structure of a single bacterium before and after its infection by bacteriophages in its native environment, without using chemical fixatives, fluorescent dyes or negative stains. Such direct observation reveals the presence of assembly intermediates of the bacteriophage and thus allows us to map out the maturation pathway of the bacteriophage inside its host.

  11. Identifying the assembly pathway of cyanophage inside the marine bacterium using electron cryo-tomography

    OpenAIRE

    Wei Dai; Schmid, Michael F.; King, Jonathan A.; Wah Chiu

    2014-01-01

    Advances in electron cryo-tomography open up a new avenue to visualize the 3-D internal structure of a single bacterium before and after its infection by bacteriophages in its native environment, without using chemical fixatives, fluorescent dyes or negative stains. Such direct observation reveals the presence of assembly intermediates of the bacteriophage and thus allows us to map out the maturation pathway of the bacteriophage inside its host.

  12. Distinct annular oligomers captured along the assembly and disassembly pathways of transthyretin amyloid protofibrils.

    Directory of Open Access Journals (Sweden)

    Ricardo H Pires

    Full Text Available BACKGROUND: Defects in protein folding may lead to severe degenerative diseases characterized by the appearance of amyloid fibril deposits. Cytotoxicity in amyloidoses has been linked to poration of the cell membrane that may involve interactions with amyloid intermediates of annular shape. Although annular oligomers have been detected in many amyloidogenic systems, their universality, function and molecular mechanisms of appearance are debated. METHODOLOGY/PRINCIPAL FINDINGS: We investigated with high-resolution in situ atomic force microscopy the assembly and disassembly of transthyretin (TTR amyloid protofibrils formed of the native protein by pH shift. Annular oligomers were the first morphologically distinct intermediates observed in the TTR aggregation pathway. Morphological analysis suggests that they can assemble into a double-stack of octameric rings with a 16 ± 2 nm diameter, and displaying the tendency to form linear structures. According to light scattering data coupled to AFM imaging, annular oligomers appeared to undergo a collapse type of structural transition into spheroid oligomers containing 8-16 monomers. Disassembly of TTR amyloid protofibrils also resulted in the rapid appearance of annular oligomers but with a morphology quite distinct from that observed in the assembly pathway. CONCLUSIONS/SIGNIFICANCE: Our observations indicate that annular oligomers are key dynamic intermediates not only in the assembly but also in the disassembly of TTR protofibrils. The balance between annular and more compact forms of aggregation could be relevant for cytotoxicity in amyloidogenic disorders.

  13. Assembly of a novel biosynthetic pathway for production of the plant flavonoid fisetin in Escherichia coli.

    Science.gov (United States)

    Stahlhut, Steen G; Siedler, Solvej; Malla, Sailesh; Harrison, Scott J; Maury, Jérôme; Neves, Ana Rute; Forster, Jochen

    2015-09-01

    Plant secondary metabolites are an underutilized pool of bioactive molecules for applications in the food, pharma and nutritional industries. One such molecule is fisetin, which is present in many fruits and vegetables and has several potential health benefits, including anti-cancer, anti-viral and anti-aging activity. Moreover, fisetin has recently been shown to prevent Alzheimer's disease in mice and to prevent complications associated with diabetes type I. Thus far the biosynthetic pathway of fisetin in plants remains elusive. Here, we present the heterologous assembly of a novel fisetin pathway in Escherichia coli. We propose a novel biosynthetic pathway from the amino acid, tyrosine, utilizing nine heterologous enzymes. The pathway proceeds via the synthesis of two flavanones never produced in microorganisms before--garbanzol and resokaempferol. We show for the first time a functional biosynthetic pathway and establish E. coli as a microbial platform strain for the production of fisetin and related flavonols. Copyright © 2015 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.

  14. Desosamine in multicomponent reactions

    NARCIS (Netherlands)

    Achatz, Sepp; Dömling, Alexander

    2006-01-01

    Desosamine occurring ubiquitously in natural products is introduced into isocyanide based multicomponent reaction chemistry. Corresponding products are of potential interest for the design of novel antibiotics. © 2006.

  15. Desosamine in multicomponent reactions

    NARCIS (Netherlands)

    Achatz, Sepp; Dömling, Alexander

    2006-01-01

    Desosamine occurring ubiquitously in natural products is introduced into isocyanide based multicomponent reaction chemistry. Corresponding products are of potential interest for the design of novel antibiotics. © 2006.

  16. De novo transcriptome assembly and the putative biosynthetic pathway of steroidal sapogenins of Dioscorea composita.

    Directory of Open Access Journals (Sweden)

    Xia Wang

    Full Text Available The plant Dioscorea composita has important applications in the medical and energy industries, and can be used for the extraction of steroidal sapogenins (important raw materials for the synthesis of steroidal drugs and bioethanol production. However, little is known at the genetic level about how sapogenins are biosynthesized in this plant. Using Illumina deep sequencing, 62,341 unigenes were obtained by assembling its transcriptome, and 27,720 unigenes were annotated. Of these, 8,022 unigenes were mapped to 243 specific pathways, and 531 unigenes were identified to be involved in 24 secondary metabolic pathways. 35 enzymes, which were encoded by 79 unigenes, were related to the biosynthesis of steroidal sapogenins in this transcriptome database, covering almost all the nodes in the steroidal pathway. The results of real-time PCR experiments on ten related transcripts (HMGR, MK, SQLE, FPPS, DXS, CAS, HMED, CYP51, DHCR7, and DHCR24 indicated that sapogenins were mainly biosynthesized by the mevalonate pathway. The expression of these ten transcripts in the tuber and leaves was found to be much higher than in the stem. Also, expression in the shoots was low. The nucleotide and protein sequences and conserved domains of four related genes (HMGR, CAS, SQS, and SMT1 were highly conserved between D. composita and D. zingiberensis; but expression of these four genes is greater in D. composita. However, there is no expression of these key enzymes in potato and no steroidal sapogenins are synthesized.

  17. RECOVERY ACT - Thylakoid Assembly and Folded Protein Transport by the Tat Pathway

    Energy Technology Data Exchange (ETDEWEB)

    Dabney-Smith, Carole [Miami Univ., Oxford, OH (United States)

    2016-07-18

    Assembly of functional photosystems complete with necessary intrinsic (membrane-bound) and extrinsic proteins requires the function of at least 3 protein transport pathways in thylakoid membranes. Our research focuses on one of those pathways, a unique and essential protein transport pathway found in the chloroplasts of plants, bacteria, and some archaebacteria, the Twin arginine translocation (Tat) system. The chloroplast Tat (cpTat) system is thought to be responsible for the proper location of ~50% of thylakoid lumen proteins, several of which are necessary for proper photosystem assembly, maintenance, and function. Specifically, cpTat systems are unique because they transport fully folded and assembled proteins across ion tight membranes using only three membrane components, Tha4, Hcf106, and cpTatC, and the protonmotive force generated by photosynthesis. Despite the importance of the cpTat system in plants, the mechanism of transport of a folded precursor is not well known. Our long-term goal is to investigate the role protein transport systems have on organelle biogenesis, particularly the assembly of membrane protein complexes in thylakoids of chloroplasts. The objective of this proposal is to correlate structural changes in the membrane-bound cpTat component, Tha4, to the mechanism of translocation of folded-precursor substrates across the membrane bilayer by using a cysteine accessibility and crosslinking approach. Our central hypothesis is that the precursor passes through a proteinaceous pore of assembled Tha4 protomers that have undergone a conformational or topological change in response to transport. This research is predicated upon the observations that Tha4 exists in molar excess in the membrane relative to the other cpTat components; its regulated assembly to the precursor-bound receptor; and our data showing oligomerization of Tha4 into very large complexes in response to transport. Our rationale for these studies is that understanding cp

  18. Assembly of functional photosystem complexes in Rhodobacter sphaeroides incorporating carotenoids from the spirilloxanthin pathway.

    Science.gov (United States)

    Chi, Shuang C; Mothersole, David J; Dilbeck, Preston; Niedzwiedzki, Dariusz M; Zhang, Hao; Qian, Pu; Vasilev, Cvetelin; Grayson, Katie J; Jackson, Philip J; Martin, Elizabeth C; Li, Ying; Holten, Dewey; Neil Hunter, C

    2015-02-01

    Carotenoids protect the photosynthetic apparatus against harmful radicals arising from the presence of both light and oxygen. They also act as accessory pigments for harvesting solar energy, and are required for stable assembly of many light-harvesting complexes. In the phototrophic bacterium Rhodobacter (Rba.) sphaeroides phytoene desaturase (CrtI) catalyses three sequential desaturations of the colourless carotenoid phytoene, extending the number of conjugated carbon-carbon double bonds, N, from three to nine and producing the yellow carotenoid neurosporene; subsequent modifications produce the yellow/red carotenoids spheroidene/spheroidenone (N=10/11). Genomic crtI replacements were used to swap the native three-step Rba. sphaeroides CrtI for the four-step Pantoea agglomerans enzyme, which re-routed carotenoid biosynthesis and culminated in the production of 2,2'-diketo-spirilloxanthin under semi-aerobic conditions. The new carotenoid pathway was elucidated using a combination of HPLC and mass spectrometry. Premature termination of this new pathway by inactivating crtC or crtD produced strains with lycopene or rhodopin as major carotenoids. All of the spirilloxanthin series carotenoids are accepted by the assembly pathways for LH2 and RC-LH1-PufX complexes. The efficiency of carotenoid-to-bacteriochlorophyll energy transfer for 2,2'-diketo-spirilloxanthin (15 conjugated CC bonds; N=15) in LH2 complexes is low, at 35%. High energy transfer efficiencies were obtained for neurosporene (N=9; 94%), spheroidene (N=10; 96%) and spheroidenone (N=11; 95%), whereas intermediate values were measured for lycopene (N=11; 64%), rhodopin (N=11; 62%) and spirilloxanthin (N=13; 39%). The variety and stability of these novel Rba. sphaeroides antenna complexes make them useful experimental models for investigating the energy transfer dynamics of carotenoids in bacterial photosynthesis.

  19. De novo assembly of Euphorbia fischeriana root transcriptome identifies prostratin pathway related genes

    Directory of Open Access Journals (Sweden)

    Barrero Roberto A

    2011-12-01

    Full Text Available Abstract Background Euphorbia fischeriana is an important medicinal plant found in Northeast China. The plant roots contain many medicinal compounds including 12-deoxyphorbol-13-acetate, commonly known as prostratin that is a phorbol ester from the tigliane diterpene series. Prostratin is a protein kinase C activator and is effective in the treatment of Human Immunodeficiency Virus (HIV by acting as a latent HIV activator. Latent HIV is currently the biggest limitation for viral eradication. The aim of this study was to sequence, assemble and annotate the E. fischeriana transcriptome to better understand the potential biochemical pathways leading to the synthesis of prostratin and other related diterpene compounds. Results In this study we conducted a high throughput RNA-seq approach to sequence the root transcriptome of E. fischeriana. We assembled 18,180 transcripts, of these the majority encoded protein-coding genes and only 17 transcripts corresponded to known RNA genes. Interestingly, we identified 5,956 protein-coding transcripts with high similarity (> = 75% to Ricinus communis, a close relative to E. fischeriana. We also evaluated the conservation of E. fischeriana genes against EST datasets from the Euphorbeacea family, which included R. communis, Hevea brasiliensis and Euphorbia esula. We identified a core set of 1,145 gene clusters conserved in all four species and 1,487 E. fischeriana paralogous genes. Furthermore, we screened E. fischeriana transcripts against an in-house reference database for genes implicated in the biosynthesis of upstream precursors to prostratin. This identified 24 and 9 candidate transcripts involved in the terpenoid and diterpenoid biosyntehsis pathways, respectively. The majority of the candidate genes in these pathways presented relatively low expression levels except for 1-hydroxy-2-methyl-2-(E-butenyl 4-diphosphate synthase (HDS and isopentenyl diphosphate/dimethylallyl diphosphate synthase (IDS, which

  20. Multicomponent Self-assembly:Spontaneous Formation of a Metallomacrocycle from Two Quinoline Based Linear Ligands and Four Silver(Ⅰ) Nitrates

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    @@ Using metal ions to control the self-assembly of metallosupramolecules of varying architecture is one of the fascinating developments in supramolecular chemistry[1,2],particularly those concerned with the deliberate construction of molecular aggregates,like helices,rotaxanes,catenanes,knots,cages[3~6] and the crystal engineering of two or three dimensional networks with varied topology and interpenetration[7~10].Coordination bonds have proved themselves to be one of the most useful connectors in supramolecular self-assembly due to their versatile geometrical modes(e.g.linear,trigonal,square plane,tetrahedral,octahedral) in bond formations.By careful design of tailored ligands,various novel supramolecular architectures have been constructed.Recently,angular bi- or tridentate and other polydentate ligands have aroused a special interest,and a variety of molecular squares,boxes and cages[1~14] with internal cavity or void have been reported,in which many nanoscale structures are formed[6,15,16].We have been interested in the construction of metal based supramolecular structures with polydentate ligands[17~20] and herein report a new metallomacrocyclic complex assembled from two linear polydentate ligands and silver(Ⅰ) nitrate.

  1. Molecular recognition between glyconectins as an adhesion self-assembly pathway to multicellularity.

    Science.gov (United States)

    Misevic, Gradimir N; Guerardel, Yann; Sumanovski, Lazar T; Slomianny, Marie-Christine; Demarty, Maurice; Ripoll, Camille; Karamanos, Yannis; Maes, Emmanuel; Popescu, Octavian; Strecker, Gerard

    2004-04-01

    primordial glyconectin to glyconectin recognition may be a new paradigm in the self-assembly and non-self discrimination pathway of cellular adhesion leading to multicellularity.

  2. Supramolecular self-assembly on the B-Si(111)-(√3x√3) R30° surface: From single molecules to multicomponent networks

    Science.gov (United States)

    Makoudi, Younes; Jeannoutot, Judicaël; Palmino, Frank; Chérioux, Frédéric; Copie, Guillaume; Krzeminski, Christophe; Cleri, Fabrizio; Grandidier, Bruno

    2017-09-01

    Understanding the physical and chemical processes in which local interactions lead to ordered structures is of particular relevance to the realization of supramolecular architectures on surfaces. While spectacular patterns have been demonstrated on metal surfaces, there have been fewer studies of the spontaneous organization of supramolecular networks on semiconductor surfaces, where the formation of covalent bonds between organics and adatoms usually hamper the diffusion of molecules and their subsequent interactions with each other. However, the saturation of the dangling bonds at a semiconductor surface is known to make them inert and offers a unique way for the engineering of molecular patterns on these surfaces. This review describes the physicochemical properties of the passivated B-Si(111)-(√3x√3) R30° surface, that enable the self-assembly of molecules into a rich variety of extended and regular structures on silicon. Particular attention is given to computational methods based on multi-scale simulations that allow to rationalize the relative contribution of the dispersion forces involved in the self-assembled networks observed with scanning tunneling microscopy. A summary of state of the art studies, where a fine tuning of the molecular network topology has been achieved, sheds light on new frontiers for exploiting the construction of supramolecular structures on semiconductor surfaces.

  3. PALM-IST: Pathway Assembly from Literature Mining - an Information Search Tool

    Science.gov (United States)

    Mandloi, Sapan; Chakrabarti, Saikat

    2015-01-01

    Manual curation of biomedical literature has become extremely tedious process due to its exponential growth in recent years. To extract meaningful information from such large and unstructured text, newer and more efficient mining tool is required. Here, we introduce PALM-IST, a computational platform that not only allows users to explore biomedical abstracts using keyword based text mining but also extracts biological entity (e.g., gene/protein, drug, disease, biological processes, cellular component, etc.) information from the extracted text and subsequently mines various databases to provide their comprehensive inter-relation (e.g., interaction, expression, etc.). PALM-IST constructs protein interaction network and pathway information data relevant to the text search using multiple data mining tools and assembles them to create a meta-interaction network. It also analyzes scientific collaboration by extraction and creation of “co-authorship network,” for a given search context. Hence, this useful combination of literature and data mining provided in PALM-IST can be used to extract novel protein-protein interaction (PPI), to generate meta-pathways and further to identify key crosstalk and bottleneck proteins. PALM-IST is available at www.hpppi.iicb.res.in/ctm. PMID:25989388

  4. Multicomponent flow modeling

    Institute of Scientific and Technical Information of China (English)

    GIOVANGIGLI; Vincent

    2012-01-01

    We present multicomponent flow models derived from the kinetic theory of gases and investigate the symmetric hyperbolic-parabolic structure of the resulting system of partial differential equations.We address the Cauchy problem for smooth solutions as well as the existence of deflagration waves,also termed anchored waves.We further discuss related models which have a similar hyperbolic-parabolic structure,notably the SaintVenant system with a temperature equation as well as the equations governing chemical equilibrium flows.We next investigate multicomponent ionized and magnetized flow models with anisotropic transport fluxes which have a different mathematical structure.We finally discuss numerical algorithms specifically devoted to complex chemistry flows,in particular the evaluation of multicomponent transport properties,as well as the impact of multicomponent transport.

  5. Microwave Multicomponent Synthesis

    Directory of Open Access Journals (Sweden)

    Helmut M. Hügel

    2009-12-01

    Full Text Available In the manner that very important research is often performed by multidisciplinary research teams, the applications of multicomponent reactions involving the combination of multiple starting materials with different functional groups leading to the higher efficiency and environmentally friendly construction of multifunctional/complex target molecules is growing in importance. This review will explore the advances and advantages in microwave multicomponent synthesis (MMS that have been achieved over the last five years.

  6. Understanding Pathway Complexity of Organic Micro/Nanofiber Growth in Hydrogen Bonded Co-Assembly of Aromatic Amino Acids.

    Science.gov (United States)

    Xing, Pengyao; Li, Peizhou; Chen, Hongzhong; Hao, Aiyou; Zhao, Yanli

    2017-04-03

    Rational engineering of one-dimensional (1D) self-assembled aggregates to produce desired materials for versatile functions remains a challenge. In this work, we report the noncovalent modulation of 1D aggregates at micro/nanoscale using a co-assembly protocol. Aromatic amino acids were employed as the model building blocks, and melamine (Mm) behaves as a modulator to form co-assembly arrays with aromatic amino acids selectively. The selective self-assembly behavior between aromatic amino acids and Mm allows distinguishing and detecting Mm and aromatic amino acids from their analogues in macroscopic and microscopic scales. Dimensions and sizes of fibrous aggregates prepared from different amino acids show two opposite pathways from pristine assemblies to co-assemblies induced by the addition of Mm. This pathway complexity could be controlled by the molecular conformation determined by α-positioned substituents. The developed hypothesis presents an excellent expansibility to other substrates, which may guide us to rationally design and screen 1D materials with different dimensions and sizes including the production of high-quality self-standing hydrogels.

  7. Vesicular Trafficking to the Immune Synapse: How to Assemble Receptor-Tailored Pathways from a Basic Building Set.

    Science.gov (United States)

    Onnis, Anna; Finetti, Francesca; Baldari, Cosima T

    2016-01-01

    The signals that orchestrate T-cell activation are coordinated within a highly organized interface with the antigen-presenting cell (APC), known as the immune synapse (IS). IS assembly depends on T-cell antigen receptor engagement by a specific peptide antigen-major histocompatibility complex ligand. This primary event leads to polarized trafficking of receptors and signaling mediators associated with recycling endosomes to the cellular interface, which contributes to IS assembly as well as signal termination and favors information transfer from T cells to APCs. Here, we will review recent advances on the vesicular pathways implicated in IS assembly and maintenance, focusing on the spatiotemporal regulation of the traffic of specific receptors by Rab GTPases. Based on accumulating evidence that the IS is a functional homolog of the primary cilium, which coordinates several central signaling pathways in ciliated cells, we will also discuss the similarities in the mechanisms regulating vesicular trafficking to these specialized membrane domains.

  8. RAM-induced Allostery Facilitates Assembly of a Notch Pathway Active Transcription Complex

    Energy Technology Data Exchange (ETDEWEB)

    Friedmann, David R.; Wilson, Jeffrey J.; Kovall, Rhett A. (UCIN-MED)

    2008-07-09

    The Notch pathway is a conserved cell-to-cell signaling mechanism, in which extracellular signals are transduced into transcriptional outputs through the nuclear effector CSL. CSL is converted from a repressor to an activator through the formation of the CSL-NotchIC-Mastermind ternary complex. The RAM (RBP-J associated molecule) domain of NotchIC avidly interacts with CSL; however, its role in assembly of the CSL-NotchIC-Mastermind ternary complex is not understood. Here we provide a comprehensive thermodynamic, structural, and biochemical analysis of the RAM-CSL interaction for components from both mouse and worm. Our binding data show that RAM and CSL form a high affinity complex in the presence or absence of DNA. Our structural studies reveal a striking distal conformational change in CSL upon RAM binding, which creates a docking site for Mastermind to bind to the complex. Finally, we show that the addition of a RAM peptide in trans facilitates formation of the CSL-NotchIC-Mastermind ternary complex in vitro.

  9. RAM-Induced Allostery Facilitates Assembly of a Notch Pathway Active Transcription Complex

    Energy Technology Data Exchange (ETDEWEB)

    Friedman,D.; Wilson, J.; Kovall, R.

    2008-01-01

    The Notch pathway is a conserved cell-to-cell signaling mechanism, in which extracellular signals are transduced into transcriptional outputs through the nuclear effector CSL. CSL is converted from a repressor to an activator through the formation of the CSL-NotchIC-Mastermind ternary complex. The RAM (RBP-J associated molecule) domain of NotchIC avidly interacts with CSL; however, its role in assembly of the CSL-NotchIC-Mastermind ternary complex is not understood. Here we provide a comprehensive thermodynamic, structural, and biochemical analysis of the RAM-CSL interaction for components from both mouse and worm. Our binding data show that RAM and CSL form a high affinity complex in the presence or absence of DNA. Our structural studies reveal a striking distal conformational change in CSL upon RAM binding, which creates a docking site for Mastermind to bind to the complex. Finally, we show that the addition of a RAM peptide in trans facilitates formation of the CSL-NotchIC-Mastermind ternary complex in vitro.

  10. A non-classical assembly pathway of Escherichia coli pore-forming toxin cytolysin A.

    Science.gov (United States)

    Fahie, Monifa; Romano, Fabian B; Chisholm, Christina; Heuck, Alejandro P; Zbinden, Mark; Chen, Min

    2013-10-25

    Cytolysin A (ClyA) is an α-pore forming toxin from pathogenic Escherichia coli (E. coli) and Salmonella enterica. Here, we report that E. coli ClyA assembles into an oligomeric structure in solution in the absence of either bilayer membranes or detergents at physiological temperature. These oligomers can rearrange to create transmembrane pores when in contact with detergents or biological membranes. Intrinsic fluorescence measurements revealed that oligomers adopted an intermediate state found during the transition between monomer and transmembrane pore. These results indicate that the water-soluble oligomer represents a prepore intermediate state. Furthermore, we show that ClyA does not form transmembrane pores on E. coli lipid membranes. Because ClyA is delivered to the target host cell in an oligomeric conformation within outer membrane vesicles (OMVs), our findings suggest ClyA forms a prepore oligomeric structure independently of the lipid membrane within the OMV. The proposed model for ClyA represents a non-classical pathway to attack eukaryotic host cells.

  11. Coordinated Activation of VEGF/VEGFR-2 and PPARδ Pathways by a Multi-Component Chinese Medicine DHI Accelerated Recovery from Peripheral Arterial Disease in Type 2 Diabetic Mice

    Science.gov (United States)

    He, Shuang; Zhao, Tiechan; Guo, Hao; Meng, Yanzhi; Qin, Gangjian; Goukassian, David A.; Han, Jihong; Gao, Xuimei; Zhu, Yan

    2016-01-01

    Diabetic mellitus (DM) patients are at an increased risk of developing peripheral arterial disease (PAD). Danhong injection (DHI) is a Chinese patent medicine widely used for several cardiovascular indications but the mechanism of action is not well-understood. We investigated the therapeutic potential of DHI on experimental PAD in mice with chemically induced as well as genetic (KKAy) type 2 DM and the overlapping signaling pathways regulating both therapeutic angiogenesis and glucose homeostasis. Compared with normal genetic background wild type (WT) mice, both DM mice showed impaired perfusion recovery in hind-limb ischemia (HLI) model. DHI treatment significantly accelerated perfusion recovery, lowered blood glucose and improved glucose tolerance in both DM models. Bioluminescent imaging demonstrated a continuous ischemia-induced vascular endothelial growth factor receptor 2 (VEGFR-2) gene expressions with a peak time coincident with the maximal DHI stimulation. Flow cytometry analysis showed a DHI-mediated increase in endothelial progenitor cell (EPC) mobilization from bone marrow to circulating peripheral blood. DHI administration upregulated the expression of vascular endothelial growth factor A (VEGF-A) and VEGF receptor-2 (VEGFR-2) in ischemic muscle. A cross talk between ischemia-induced angiogenesis and glucose tolerance pathways was analyzed by Ingenuity Pathway Analysis (IPA) which suggested an interaction of VEGF-A/VEGFR-2 and peroxisome proliferator-activated receptor δ (PPARδ)/peroxisome proliferator-activated receptor γ (PPARγ) genes. We confirmed that upregulation of VEGF-A/VEGFR-2 by DHI promoted PPARδ gene expression in both type 2 diabetic mice. Our findings demonstrated that a multi-component Chinese medicine DHI effectively increased blood flow recovery after tissue ischemia in diabetic mice by promoting angiogenesis and improving glucose tolerance through a concomitant activation of VEGF-A/VEGFR-2 and PPARδ signaling pathways. PMID

  12. Assembly and release of infectious hepatitis C virus involving unusual organization of the secretory pathway

    Institute of Scientific and Technical Information of China (English)

    Miriam; Triyatni; Edward; A; Berger; Bertrand; Saunier

    2016-01-01

    AIM: To determine if calnexin(CANX), RAB1 and alphatubulin were involved in the production of hepatitis C virus(HCV) particles by baby hamster kidney-West Nile virus(BHK-WNV) cells. METHODS: Using a si RNA-based approach complemented with immuno-fluorescence confocal microscope and Western blot studies, we examined the roles of CANX, RAB1 and alpha-tubulin in the production of HCV particles by permissive BHK-WNV cells expressing HCV structural proteins or the full-length genome of HCV genotype 1a. Immuno-fluorescence studies in producer cells were performed with monoclonal antibodies against HCV structural proteins, as well as immunoglobulin from the serum of a patient recently cured from an HCV infection of same genotype. The cellular compartment stained by the serum immunoglobulin was also observedin thin section transmission electron microscopy. These findings were compared with the JFH-1 strain/Huh-7.5 cell model.RESULTS: We found that CANX was necessary for the production of HCV particles by BHK-WNV cells. This process involved the recruitment of a subset of HCV proteins, detected by immunoglobulin of an HCV-cured patient, in a compartment of rearranged membranes bypassing the endoplasmic reticulum-Golgi intermediary compartment and surrounded by mitochondria. It also involved the maturation of N-linked glycans on HCV envelope proteins, which was required for assembly and/or secretion of HCV particles. The formation of this specialized compartment required RAB1; upon expression of HCV structural genes, this compartment developed large vesicles with viral particles. RAB1 and alpha-tubulin were required for the release of HCV particles. These cellular factors were also involved in the production of HCVcc in the JFH-1 strain/Huh-7.5 cell system, which involves HCV RNA replication. The secretion of HCV particles by BHK-WNV cells presents similarities with a pathway involving caspase-1; a caspase-1 inhibitor was found to suppress the production of HCV particles

  13. MKS5 and CEP290 Dependent Assembly Pathway of the Ciliary Transition Zone.

    Directory of Open Access Journals (Sweden)

    Chunmei Li

    2016-03-01

    --including the previously uncharacterised mammalian Tmem80--and suggest an MKS-5 and CEP-290-dependent assembly pathway for building a functional TZ.

  14. Cryo-EM reconstruction of the Cafeteria roenbergensis virus capsid suggests novel assembly pathway for giant viruses.

    Science.gov (United States)

    Xiao, Chuan; Fischer, Matthias G; Bolotaulo, Duer M; Ulloa-Rondeau, Nancy; Avila, Gustavo A; Suttle, Curtis A

    2017-07-14

    Whereas the protein composition and overall shape of several giant virus capsids have been described, the mechanism by which these large capsids assemble remains enigmatic. Here, we present a reconstruction of the capsid of Cafeteria roenbergensis virus (CroV), one of the largest viruses analyzed by cryo-electron microscopy (cryo-EM) to date. The CroV capsid has a diameter of 3,000 Å and a Triangulation number of 499. Unlike related mimiviruses, the CroV capsid is not decorated with glycosylated surface fibers, but features 30 Å-long surface protrusions that are formed by loops of the major capsid protein. Based on the orientation of capsomers in the cryo-EM reconstruction, we propose that the capsids of CroV and related giant viruses are assembled by a newly conceived assembly pathway that initiates at a five-fold vertex and continuously proceeds outwards in a spiraling fashion.

  15. Co-assembly of cyclic peptide nanotubes and block copolymers in thin films: controlling the kinetic pathway

    Science.gov (United States)

    Zhang, Chen; Xu, Ting

    2015-09-01

    Directed co-assembly of polymer-conjugated cyclic peptide nanotubes (CPNs) and block copolymers in thin films is a viable approach to fabricate sub-nanometer porous membranes without synthesizing nanotubes with identical length and vertical alignment. Here we show that the process is pathway dependent and successful co-assembly requires eliminating CPNs larger than 100 nm in solution. Optimizing polymer-solvent interactions can improve conjugate dispersion to a certain extent, but this limits thin film fabrication. Introduction of a trace amount of hydrogen-bond blockers, such as trifluoroacetic acid by vapor absorption, is more effective to reduce CPN aggregation in solution and circumvents issues of solvent immiscibility. This study provides critical insights into guided assemblies within nanoscopic frameworks toward sub-nanometer porous membranes.Directed co-assembly of polymer-conjugated cyclic peptide nanotubes (CPNs) and block copolymers in thin films is a viable approach to fabricate sub-nanometer porous membranes without synthesizing nanotubes with identical length and vertical alignment. Here we show that the process is pathway dependent and successful co-assembly requires eliminating CPNs larger than 100 nm in solution. Optimizing polymer-solvent interactions can improve conjugate dispersion to a certain extent, but this limits thin film fabrication. Introduction of a trace amount of hydrogen-bond blockers, such as trifluoroacetic acid by vapor absorption, is more effective to reduce CPN aggregation in solution and circumvents issues of solvent immiscibility. This study provides critical insights into guided assemblies within nanoscopic frameworks toward sub-nanometer porous membranes. Electronic supplementary information (ESI) available. See DOI: 10.1039/c5nr03915k

  16. Lipidomics reveals multiple pathway effects of a multi-components preparation on lipid biochemistry in ApoE*3Leiden.CETP mice.

    Directory of Open Access Journals (Sweden)

    Heng Wei

    Full Text Available BACKGROUND: Causes and consequences of the complex changes in lipids occurring in the metabolic syndrome are only partly understood. Several interconnected processes are deteriorating, which implies that multi-target approaches might be more successful than strategies based on a limited number of surrogate markers. Preparations from Chinese Medicine (CM systems have been handed down with documented clinical features similar as metabolic syndrome, which might help developing new intervention for metabolic syndrome. The progress in systems biology and specific animal models created possibilities to assess the effects of such preparations. Here we report the plasma and liver lipidomics results of the intervention effects of a preparation SUB885C in apolipoprotein E3 Leiden cholesteryl ester transfer protein (ApoE*3Leiden.CETP mice. SUB885C was developed according to the principles of CM for treatment of metabolic syndrome. The cannabinoid receptor type 1 blocker rimonabant was included as a general control for the evaluation of weight and metabolic responses. METHODOLOGY/PRINCIPAL FINDINGS: ApoE*3Leiden.CETP mice with mild hypercholesterolemia were divided into SUB885C-, rimonabant- and non-treated control groups. SUB885C caused no weight loss, but significantly reduced plasma cholesterol (-49%, p<0.001, CETP levels (-31%, p<0.001, CETP activity (-74%, p<0.001 and increased HDL-C (39%, p<0.05. It influenced lipidomics classes of cholesterol esters and triglycerides the most. Rimonabant induced a weight loss (-9%, p<0.05, but only a moderate improvement of lipid profiles. In vitro, SUB885C extract caused adipolysis stimulation and adipogenesis inhibition in 3T3-L1 cells. CONCLUSIONS: SUB885C, a multi-components preparation, is able to produce anti-atherogenic changes in lipids of the ApoE*3Leiden.CETP mice, which are comparable to those obtained with compounds belonging to known drugs (e.g. rimonabant, atorvastatin, niacin. This study successfully

  17. Formin-like2 regulates Rho/ROCK pathway to promote actin assembly and cell invasion of colorectal cancer.

    Science.gov (United States)

    Zeng, Yuanfeng; Xie, Huijun; Qiao, Yudan; Wang, Jianmei; Zhu, Xiling; He, Guoyang; Li, Yuling; Ren, Xiaoli; Wang, Feifei; Liang, Li; Ding, Yanqing

    2015-10-01

    Formin-like2 (FMNL2) is a member of the diaphanous-related formins family, which act as effectors and upstream modulators of Rho GTPases signaling and control the actin-dependent processes, such as cell motility or invasion. FMNL2 has been identified as promoting the motility and metastasis in colorectal carcinoma (CRC). However, whether FMNL2 regulates Rho signaling to promote cancer cell invasion remains unclear. In this study, we demonstrated an essential role for FMNL2 in the activations of Rho/ROCK pathway, SRF transcription or actin assembly, and subsequent CRC cell invasion. FMNL2 could activate Rho/ROCK pathway, and required ROCK to promote CRC cell invasion. Moreover, FMNL2 promoted the formation of filopodia and stress fiber, and activated the SRF transcription in a Rho-dependent manner. We also demonstrated that FMNL2 was necessary for LPA-induced invasion, RhoA/ROCK activation, actin assembly and SRF activation. FMNL2 was an essential component of LPA signal transduction toward RhoA by directly interacting with LARG. LARG silence inhibited RhoA/ROCK pathway and CRC cell invasion. Collectively, these data indicate that FMNL2, acting as upstream of RhoA by interacting with LARG, can promote actin assembly and CRC cell invasion through a Rho/ROCK-dependent mechanism.

  18. PI3K/mTOR-dependent signaling pathway as a possible regulator of processing bodies’ assembly

    Directory of Open Access Journals (Sweden)

    Filonenko V. V.

    2011-10-01

    Full Text Available Aim. To study the role of PI3K/mTOR signaling pathway in regulation of processing body (PB assembly. Methods. During this study we employed cell imaging technique and Western blot analysis. Results. It was shown that treatment of cells with the specific inhibitors of PI3K/mTOR pathway leads to changes of PBs’ number and size within cells as well as proteasomal degradation of their scaffold protein RCD-8. Conclusions. We speculate that mTOR/PI3K pathway may regulate in part the dynamic of PB formation in the cell by affecting the stability of RCD-8 protein and therefore controle mRNA metabolism

  19. Modern methods of production of large-sized multicomponent optical systems

    Science.gov (United States)

    Galyavov, Igor R.; Belousov, Sergey P.; Ignatov, Aleksandr N.; Ponin, Oleg V.; Sharov, Aleksandr A.; Domnin, Aleksandr V.

    2016-10-01

    The article describes the technology of production of large-sized multicomponent optical systems of different function. All stages of a production cycle are considered: assembly of separate units of optical components, including aspherical and off-axis mirrors; preliminary assembly and adjustment of all system; final adjustment of optical system. Modern computer-controlled methods of testings and adjustment of multicomponent optical systems, using the examples of production of such systems at JSC LZOS, are described.

  20. Carbon nanotubes enhance intercalated disc assembly in cardiac myocytes via the β1-integrin-mediated signaling pathway.

    Science.gov (United States)

    Sun, Hongyu; Lü, Shuanghong; Jiang, Xiao-Xia; Li, Xia; Li, Hong; Lin, Qiuxia; Mou, Yongchao; Zhao, Yuwei; Han, Yao; Zhou, Jin; Wang, Changyong

    2015-07-01

    Carbon nanotubes (CNTs) offer a new paradigm for constructing functional cardiac patches and repairing myocardial infarction (MI). However, little is known about how CNTs enhance the mechanical integrity and electrophysiological function of cardiac myocytes. To address this issue, we investigated the regularity and precise mechanism of the influence of CNTs on the assembly of intercalated disc (IDs). Here, single walled CNTs incorporated into collagen substrates were utilized as growth supports for neonatal cardiomyocytes, which enhanced cardiomyocyte adhesion and maturation. Furthermore, through the use of immunohistochemical staining, western blotting, transmission electron microscopy, and intracellular calcium transient measurement, we discovered that the addition of CNTs remarkably increased ID-related protein expression and enhanced ID assembly and functionality. On that basis, we further explored the underlying mechanism for how CNTs enhanced ID assembly through the use of immunohistochemical staining and western blotting. We found that the β1-integrin-mediated signaling pathway mediated CNT-induced upregulation of electrical and mechanical junction proteins. Notably, CNTs remarkably accelerated gap junction formation via activation of the β1-integrin-mediated FAK/ERK/GATA4 pathway. These findings provide valuable insight into the mechanistic effects that CNTs have on neonatal cardiomyocyte performance and will have a significant impact on the future of nanomedical research.

  1. Multicomponent and High Entropy Alloys

    Directory of Open Access Journals (Sweden)

    Brian Cantor

    2014-08-01

    Full Text Available This paper describes some underlying principles of multicomponent and high entropy alloys, and gives some examples of these materials. Different types of multicomponent alloy and different methods of accessing multicomponent phase space are discussed. The alloys were manufactured by conventional and high speed solidification techniques, and their macroscopic, microscopic and nanoscale structures were studied by optical, X-ray and electron microscope methods. They exhibit a variety of amorphous, quasicrystalline, dendritic and eutectic structures.

  2. Type VI secretion and bacteriophage tail tubes share a common assembly pathway.

    Science.gov (United States)

    Brunet, Yannick R; Hénin, Jérôme; Celia, Hervé; Cascales, Eric

    2014-03-01

    The Type VI secretion system (T6SS) is a widespread macromolecular structure that delivers protein effectors to both eukaryotic and prokaryotic recipient cells. The current model describes the T6SS as an inverted phage tail composed of a sheath-like structure wrapped around a tube assembled by stacked Hcp hexamers. Although recent progress has been made to understand T6SS sheath assembly and dynamics, there is no evidence that Hcp forms tubes in vivo. Here we show that Hcp interacts with TssB, a component of the T6SS sheath. Using a cysteine substitution approach, we demonstrate that Hcp hexamers assemble tubes in an ordered manner with a head-to-tail stacking that are used as a scaffold for polymerization of the TssB/C sheath-like structure. Finally, we show that VgrG but not TssB/C controls the proper assembly of the Hcp tubular structure. These results highlight the conservation in the assembly mechanisms between the T6SS and the bacteriophage tail tube/sheath.

  3. The impact of conformational transformations on the pathways and kinetics of protein self-assembly into extended matrices

    Science.gov (United States)

    de Yoreo, Jim

    2012-02-01

    The concept of a folding funnel with kinetic traps is used to describe folding of individual proteins. Using in situ AFM to investigate both collagen fibril and S-layer membrane assembly on mica, we show this concept is equally valid during self-assembly of proteins into extended matrices. Moreover, considering the conformational changes required to achieve the ordered structure is critical to understanding the pathway to the final state and the kinetics of assembly. In the collagen system, both the pathway and the final conformational state can be finely tuned by varying the ionic strength. This alters the relative strengths of the collagen-collagen and collagen-mica binding free energy, which we quantify using dynamic force spectroscopy. Moreover, when conditions result in the ordered D-band structure of collagen, the emergence of order catalyzes the further transformation leading to non-linear attachment kinetics. In the S-layer system, there is a kinetic trap associated with conformational differences between a long-lived transient state and the final stable state. Both ordered tetrameric states emerge from clusters of an amorphous precursor phase, however, they then track along two different pathways. One leads directly to the final low-energy state and the other to the kinetic trap. Over time, the trapped state transforms into the stable state. By analyzing the time and temperature dependencies of formation and transformation we find the energy barriers to formation of either state to be nearly identical, but once the high-energy state forms, the barrier to transformation to the low-energy state is large. Thus the transient state exhibits the characteristics of a kinetic trap in a folding funnel.

  4. Structure of Hepatitis E Virion-Sized Particle Reveals an RNA-Dependent Viral Assembly Pathway

    Energy Technology Data Exchange (ETDEWEB)

    Xing, L.; Wall, J.; Li, T.-C.; Mayazaki, N.; Simon, M. N.; Moore, M.; Wang, C.-Y.; Takeda, N.; Wakita, T.; Miyamura, T.; Cheng, R. H.

    2010-10-22

    Hepatitis E virus (HEV) induces acute hepatitis in humans with a high fatality rate in pregnant women. There is a need for anti-HEV research to understand the assembly process of HEV native capsid. Here, we produced a large virion-sized and a small T=1 capsid by expressing the HEV capsid protein in insect cells with and without the N-terminal 111 residues, respectively, for comparative structural analysis. The virion-sized capsid demonstrates a T=3 icosahedral lattice and contains RNA fragment in contrast to the RNA-free T=1 capsid. However, both capsids shared common decameric organization. The in vitro assembly further demonstrated that HEV capsid protein had the intrinsic ability to form decameric intermediate. Our data suggest that RNA binding is the extrinsic factor essential for the assembly of HEV native capsids.

  5. Type VI secretion and bacteriophage tail tubes share a common assembly pathway

    OpenAIRE

    Yannick R Brunet; Hénin, Jérôme; Celia, Hervé; Cascales, Eric

    2014-01-01

    The Type VI secretion system (T6SS) is a widespread macromolecular structure that delivers protein effectors to both eukaryotic and prokaryotic recipient cells. The current model describes the T6SS as an inverted phage tail composed of a sheath-like structure wrapped around a tube assembled by stacked Hcp hexamers. Although recent progress has been made to understand T6SS sheath assembly and dynamics, there is no evidence that Hcp forms tubes in vivo. Here we show that Hcp interacts with TssB...

  6. An siRNA screen of membrane trafficking genes highlights pathways common to HIV-1 and M-PMV virus assembly and release.

    Directory of Open Access Journals (Sweden)

    Xiaoyun Wen

    Full Text Available The assembly and release of retroviruses from the host cells requires a coordinated series of interactions between viral structural proteins and cellular trafficking pathways. Although a number of cellular factors involved in retrovirus assembly have been identified, it is likely that retroviruses utilize additional trafficking factors to expedite their assembly and budding that have not yet been defined. We performed a screen using an siRNA library targeting host membrane trafficking genes in order to identify new host factors that contribute to retrovirus assembly or release. We utilized two retroviruses that follow very distinct assembly pathways, HIV-1 and Mason-Pfizer monkey virus (M-PMV in order to identify host pathways that are generally applicable in retrovirus assembly versus those that are unique to HIV or M-PMV. Here we report the identification of 24 host proteins identified in the screen and subsequently validated in follow-up experiments as contributors to the assembly or release of both viruses. In addition to identifying a number of previously unsuspected individual trafficking factors, we noted multiple hits among proteins involved in modulation of the actin cytoskeleton, clathrin-mediated transport pathways, and phosphoinositide metabolism. Our study shows that distant genera of retroviruses share a number of common interaction strategies with host cell trafficking machinery, and identifies new cellular factors involved in the late stages of retroviral replication.

  7. The Drosophila PRR GNBP3 assembles effector complexes involved in antifungal defenses independently of its Toll-pathway activation function.

    Science.gov (United States)

    Matskevich, Alexey A; Quintin, Jessica; Ferrandon, Dominique

    2010-05-01

    The Drosophila Toll-signaling pathway controls the systemic antifungal host response. Gram-negative binding protein 3 (GNBP3), a member of the beta-glucan recognition protein family senses fungal infections and activates this pathway. A second detection system perceives the activity of proteolytic fungal virulence factors and redundantly activates Toll. GNBP3(hades) mutant flies succumb more rapidly to Candida albicans and to entomopathogenic fungal infections than WT flies, despite normal triggering of the Toll pathway via the virulence detection system. These observations suggest that GNBP3 triggers antifungal defenses that are not dependent on activation of the Toll pathway. Here, we show that GNBP3 agglutinates fungal cells. Furthermore, it can activate melanization in a Toll-independent manner. Melanization is likely to be an essential defense against some fungal infections given that the entomopathogenic fungus Beauveria bassiana inhibits the activity of the main melanization enzymes, the phenol oxidases. Finally, we show that GNBP3 assembles "attack complexes", which comprise phenoloxidase and the necrotic serpin. We propose that Drosophila GNBP3 targets fungi immediately at the inception of the infection by bringing effector molecules in direct contact with the invading microorganisms.

  8. Deconstruction of archaeal genome depict strategic consensus in core pathways coding sequence assembly.

    Directory of Open Access Journals (Sweden)

    Ayon Pal

    Full Text Available A comprehensive in silico analysis of 71 species representing the different taxonomic classes and physiological genre of the domain Archaea was performed. These organisms differed in their physiological attributes, particularly oxygen tolerance and energy metabolism. We explored the diversity and similarity in the codon usage pattern in the genes and genomes of these organisms, emphasizing on their core cellular pathways. Our thrust was to figure out whether there is any underlying similarity in the design of core pathways within these organisms. Analyses of codon utilization pattern, construction of hierarchical linear models of codon usage, expression pattern and codon pair preference pointed to the fact that, in the archaea there is a trend towards biased use of synonymous codons in the core cellular pathways and the Nc-plots appeared to display the physiological variations present within the different species. Our analyses revealed that aerobic species of archaea possessed a larger degree of freedom in regulating expression levels than could be accounted for by codon usage bias alone. This feature might be a consequence of their enhanced metabolic activities as a result of their adaptation to the relatively O2-rich environment. Species of archaea, which are related from the taxonomical viewpoint, were found to have striking similarities in their ORF structuring pattern. In the anaerobic species of archaea, codon bias was found to be a major determinant of gene expression. We have also detected a significant difference in the codon pair usage pattern between the whole genome and the genes related to vital cellular pathways, and it was not only species-specific but pathway specific too. This hints towards the structuring of ORFs with better decoding accuracy during translation. Finally, a codon-pathway interaction in shaping the codon design of pathways was observed where the transcription pathway exhibited a significantly different coding

  9. CRYSTALLIZATION IN MULTICOMPONENT GLASSES

    Energy Technology Data Exchange (ETDEWEB)

    KRUGER AA; HRMA PR

    2009-10-08

    In glass processing situations involving glass crystallization, various crystalline forms nucleate, grow, and dissolve, typically in a nonuniform temperature field of molten glass subjected to convection. Nuclear waste glasses are remarkable examples of multicomponent vitrified mixtures involving partial crystallization. In the glass melter, crystals form and dissolve during batch-to-glass conversion, melter processing, and product cooling. Crystals often agglomerate and sink, and they may settle at the melter bottom. Within the body of cooling glass, multiple phases crystallize in a non-uniform time-dependent temperature field. Self-organizing periodic distribution (the Liesegnang effect) is common. Various crystallization phenomena that occur in glass making are reviewed.

  10. Rapid α-oligomer formation mediated by the Aβ C terminus initiates an amyloid assembly pathway

    OpenAIRE

    Misra, Pinaki; Kodali, Ravindra; Chemuru, Saketh; Kar, Karunakar; Wetzel, Ronald

    2016-01-01

    Since early oligomeric intermediates in amyloid assembly are often transient and difficult to distinguish, characterize and quantify, the mechanistic basis of the initiation of spontaneous amyloid growth is often opaque. We describe here an approach to the analysis of the Aβ aggregation mechanism that uses Aβ-polyglutamine hybrid peptides designed to retard amyloid maturation and an adjusted thioflavin intensity scale that reveals structural features of aggregation intermediates. The results ...

  11. Cx31 is assembled and trafficked to cell surface by ER-Golgi pathway and degraded by proteasomal or lysosomal pathways

    Institute of Scientific and Technical Information of China (English)

    Li Qiang HE; Zhi Gao LONG; He Ping DAI; Kun XIA; Jia Hui XIA; Zhuo Hua ZHANG; Fang CAI; Yu LIU; Mu Jun LIU; Zhi Ping TAN; Qian PAN; Fai Yan FANG; De Sheng LIANG; Ling Qian WU

    2005-01-01

    Gap junctions, consisting of connexins, allow the exchange of small molecules (<1 kD) between adjacent cells, thus providing a mechanism for synchronizing the responses of groups of cells to environmental stimuli. Connexin 31 is a member of the connexin family. Mutations on connexin 31 are associated with erythrokeratodermia variabilis, hearing impairment and peripheral neuropathy. However, the pathological mechanism for connexin 31 mutants in these diseases are still unknown. In this study, we analyzed the assembly, trafficking and metabolism of connexin 31 in HeLa cells stably expressing connexin 31. Calcein transfer assay showed that calcein transfer was inhibited when cells were treated with Brefeldin A or cytochalasin D, but not when treated with nocodazole or α-glycyrrhetinic acid, suggesting that Golgi apparatus and actin filaments, but not microtubules, are crucial to the trafficking and assembly of connexin 31, as well as the formation of gap junction intercellular communication by connexin 31. Additionally, α-glycyrrhetinic acid did not effectively inhibit gap junctional intercellular communication formed by connexin 31. Pulse-chase assay revealed that connexin 31 had a half-life of about 6 h. Moreover, Western blotting and fluorescent staining demonstrated that in HeLa cells stably expressing connexin 31, the amount of connexin 31 was significantly increased after these cells were treated with proteasomal or lysosomal inhibitors. These findings indicate that connexin 31 was rapidly renewed,and possibly degraded by both proteasomal and lysosomal pathways.

  12. Primordial follicle assembly was regulated by Notch signaling pathway in the mice.

    Science.gov (United States)

    Chen, Chun-Lei; Fu, Xia-Fei; Wang, Lin-Qing; Wang, Jun-Jie; Ma, Hua-Gang; Cheng, Shun-Feng; Hou, Zhu-Mei; Ma, Jin-Mei; Quan, Guo-Bo; Shen, Wei; Li, Lan

    2014-03-01

    Notch signaling pathway, a highly conserved cell signaling system, exists in most multicellular organisms. The objective of this study was to examine Notch signaling pathway in germ cell cyst breakdown and primordial follicle formation. The receptor and ligand genes of Notch pathway (Notch1, Notch2, Jagged1, Jagged2 and Hes1) were extremely down-regulated after newborn mouse ovaries were cultured then exposed to DAPT or L-685,458 in vitro (P primordial follicles. Down-regulated mRNA expression of specific genes including Lhx8, Figla, Sohlh2 and Nobox, were also observed. The percentages of female germ cells in germ cell cysts and primordial follicles were counted after culture of newborn ovaries for 3 days in vitro. The result showed female germ cells in cysts was remarkably up-regulated while as the oocytes in primordial follicles was significantly down-regulated (P primordial follicle in mice.

  13. Activation of the yeast Hippo pathway by phosphorylation-dependent assembly of signaling complexes.

    Science.gov (United States)

    Rock, Jeremy M; Lim, Daniel; Stach, Lasse; Ogrodowicz, Roksana W; Keck, Jamie M; Jones, Michele H; Wong, Catherine C L; Yates, John R; Winey, Mark; Smerdon, Stephen J; Yaffe, Michael B; Amon, Angelika

    2013-05-17

    Scaffold-assisted signaling cascades guide cellular decision-making. In budding yeast, one such signal transduction pathway called the mitotic exit network (MEN) governs the transition from mitosis to the G1 phase of the cell cycle. The MEN is conserved and in metazoans is known as the Hippo tumor-suppressor pathway. We found that signaling through the MEN kinase cascade was mediated by an unusual two-step process. The MEN kinase Cdc15 first phosphorylated the scaffold Nud1. This created a phospho-docking site on Nud1, to which the effector kinase complex Dbf2-Mob1 bound through a phosphoserine-threonine binding domain, in order to be activated by Cdc15. This mechanism of pathway activation has implications for signal transmission through other kinase cascades and might represent a general principle in scaffold-assisted signaling.

  14. Assembling the components of the quorum sensing pathway in African trypanosomes.

    Science.gov (United States)

    Mony, Binny M; Matthews, Keith R

    2015-04-01

    African trypanosomes, parasites that cause human sleeping sickness, undergo a density-dependent differentiation in the bloodstream of their mammalian hosts. This process is driven by a released parasite-derived factor that causes parasites to accumulate in G1 and become quiescent. This is accompanied by morphological transformation to 'stumpy' forms that are adapted to survival and further development when taken up in the blood meal of tsetse flies, the vector for trypanosomiasis. Although the soluble signal driving differentiation to stumpy forms is unidentified, a recent genome-wide RNAi screen identified many of the intracellular signalling and effector molecules required for the response to this signal. These resemble components of nutritional starvation and quiescence pathways in other eukaryotes, suggesting that parasite development shares similarities with the adaptive quiescence of organisms such as yeasts and Dictyostelium in response to nutritional starvation and stress. Here, the trypanosome signalling pathway is discussed in the context of these conserved pathways and the possible contributions of opposing 'slender retainer' and 'stumpy inducer' arms described. As evolutionarily highly divergent eukaryotes, the organisation and conservation of this developmental pathway can provide insight into the developmental cycle of other protozoan parasites, as well as the adaptive and programmed developmental responses of all eukaryotic cells.

  15. Rapid α-oligomer formation mediated by the Aβ C terminus initiates an amyloid assembly pathway

    Science.gov (United States)

    Misra, Pinaki; Kodali, Ravindra; Chemuru, Saketh; Kar, Karunakar; Wetzel, Ronald

    2016-01-01

    Since early oligomeric intermediates in amyloid assembly are often transient and difficult to distinguish, characterize and quantify, the mechanistic basis of the initiation of spontaneous amyloid growth is often opaque. We describe here an approach to the analysis of the Aβ aggregation mechanism that uses Aβ-polyglutamine hybrid peptides designed to retard amyloid maturation and an adjusted thioflavin intensity scale that reveals structural features of aggregation intermediates. The results support an aggregation initiation mechanism for Aβ-polyQ hybrids, and by extension for full-length Aβ peptides, in which a modular Aβ C-terminal segment mediates rapid, non-nucleated formation of α-helical oligomers. The resulting high local concentration of tethered amyloidogenic segments within these α-oligomers facilitates transition to a β-oligomer population that, via further remodelling and/or elongation steps, ultimately generates mature amyloid. Consistent with this mechanism, an engineered Aβ C-terminal fragment delays aggregation onset by Aβ-polyglutamine peptides and redirects assembly of Aβ42 fibrils. PMID:27546208

  16. Multicomponent polymeric materials

    CERN Document Server

    Thomas, Sabu; Saha, Prosenjit

    2016-01-01

    The book offers an in-depth review of the materials design and manufacturing processes employed in the development of multi-component or multiphase polymer material systems. This field has seen rapid growth in both academic and industrial research, as multiphase materials are increasingly replacing traditional single-component materials in commercial applications. Many obstacles can be overcome by processing and using multiphase materials in automobile, construction, aerospace, food processing, and other chemical industry applications. The comprehensive description of the processing, characterization, and application of multiphase materials presented in this book offers a world of new ideas and potential technological advantages for academics, researchers, students, and industrial manufacturers from diverse fields including rubber engineering, polymer chemistry, materials processing and chemical science. From the commercial point of view it will be of great value to those involved in processing, optimizing an...

  17. Crystallization & Encapsulation in multicomponent mixtures

    NARCIS (Netherlands)

    Reus, M.A.

    2016-01-01

    In this dissertation crystallization and microencapsulation processes are used to produce multicomponent particulate products with different functionalities (improved stability, controlled release, protection from environment, etc.) and their performance is assessed. Additionally, the interactions b

  18. Optimal Parameters Multicomponent Mixtures Extruding

    Directory of Open Access Journals (Sweden)

    Ramil F. Sagitov

    2013-01-01

    Full Text Available Experimental research of multicomponent mixtures extruding from production wastes are carried out, unit for production of composites from different types of waste is presented. Having analyzed dependence of multicomponent mixtures extruding energy requirements on die length and components content at three values of angular rate of screw rotation, we received the values of energy requirements at optimal length of the die, angular speed and percent of binding additives.

  19. Yeast artificial chromosomes employed for random assembly of biosynthetic pathways and production of diverse compounds in Saccharomyces cerevisiae

    Directory of Open Access Journals (Sweden)

    Mitra Partha P

    2009-08-01

    Full Text Available Abstract Background Natural products are an important source of drugs and other commercially interesting compounds, however their isolation and production is often difficult. Metabolic engineering, mainly in bacteria and yeast, has sought to circumvent some of the associated problems but also this approach is impeded by technical limitations. Here we describe a novel strategy for production of diverse natural products, comprising the expression of an unprecedented large number of biosynthetic genes in a heterologous host. Results As an example, genes from different sources, representing enzymes of a seven step flavonoid pathway, were individually cloned into yeast expression cassettes, which were then randomly combined on Yeast Artificial Chromosomes and used, in a single transformation of yeast, to create a variety of flavonoid producing pathways. Randomly picked clones were analysed, and approximately half of them showed production of the flavanone naringenin, and a third of them produced the flavonol kaempferol in various amounts. This reflected the assembly of 5–7 step multi-species pathways converting the yeast metabolites phenylalanine and/or tyrosine into flavonoids, normally only produced by plants. Other flavonoids were also produced that were either direct intermediates or derivatives thereof. Feeding natural and unnatural, halogenated precursors to these recombinant clones demonstrated the potential to further diversify the type of molecules that can be produced with this technology. Conclusion The technology has many potential uses but is particularly suited for generating high numbers of structurally diverse compounds, some of which may not be amenable to chemical synthesis, thus greatly facilitating access to a huge chemical space in the search for new commercially interesting compounds

  20. Regulated assembly of vacuolar ATPase is increased during cluster disruption-induced maturation of dendritic cells through a phosphatidylinositol 3-kinase/mTOR-dependent pathway.

    Science.gov (United States)

    Liberman, Rachel; Bond, Sarah; Shainheit, Mara G; Stadecker, Miguel J; Forgac, Michael

    2014-01-17

    The vacuolar (H(+))-ATPases (V-ATPases) are ATP-driven proton pumps composed of a peripheral V1 domain and a membrane-embedded V0 domain. Regulated assembly of V1 and V0 represents an important regulatory mechanism for controlling V-ATPase activity in vivo. Previous work has shown that V-ATPase assembly increases during maturation of bone marrow-derived dendritic cells induced by activation of Toll-like receptors. This increased assembly is essential for antigen processing, which is dependent upon an acidic lysosomal pH. Cluster disruption of dendritic cells induces a semi-mature phenotype associated with immune tolerance. Thus, semi-mature dendritic cells are able to process and present self-peptides to suppress autoimmune responses. We have investigated V-ATPase assembly in bone marrow-derived, murine dendritic cells and observed an increase in assembly following cluster disruption. This increased assembly is not dependent upon new protein synthesis and is associated with an increase in concanamycin A-sensitive proton transport in FITC-loaded lysosomes. Inhibition of phosphatidylinositol 3-kinase with wortmannin or mTORC1 with rapamycin effectively inhibits the increased assembly observed upon cluster disruption. These results suggest that the phosphatidylinositol 3-kinase/mTOR pathway is involved in controlling V-ATPase assembly during dendritic cell maturation.

  1. Off-pathway assembly of fimbria subunits is prevented by chaperone CfaA of CFA/I fimbriae from enterotoxigenic E. coli.

    Science.gov (United States)

    Bao, Rui; Liu, Yang; Savarino, Stephen J; Xia, Di

    2016-12-01

    The assembly of the class 5 colonization factor antigen I (CFA/I) fimbriae of enterotoxigenic E. coli was proposed to proceed via the alternate chaperone-usher pathway. Here, we show that in the absence of the chaperone CfaA, CfaB, the major pilin subunit of CFA/I fimbriae, is able to spontaneously refold and polymerize into cyclic trimers. CfaA kinetically traps CfaB to form a metastable complex that can be stabilized by mutations. Crystal structure of the stabilized complex reveals distinctive interactions provided by CfaA to trap CfaB in an assembly competent state through donor-strand complementation (DSC) and cleft-mediated anchorage. Mutagenesis indicated that DSC controls the stability of the chaperone-subunit complex and the cleft-mediated anchorage of the subunit C-terminus additionally assist in subunit refolding. Surprisingly, over-stabilization of the chaperone-subunit complex led to delayed fimbria assembly, whereas destabilizing the complex resulted in no fimbriation. Thus, CfaA acts predominantly as a kinetic trap by stabilizing subunit to avoid its off-pathway self-polymerization that results in energetically favorable trimers and could serve as a driving force for CFA/I pilus assembly, representing an energetic landscape unique to class 5 fimbria assembly. Published 2016. This article is a U.S. Government work and is in the public domain in the USA. Molecular Microbiology published by John Wiley & Sons Ltd.

  2. Multicomponent Protein Cage Architectures for Photocatalysis

    Energy Technology Data Exchange (ETDEWEB)

    Gupta, Arunava [Univ. of Alabama, Tuscaloosa, AL (United States); Prevelige, Peter E [Univ. of Alabama, Birmingham, AL (United States)

    2016-01-04

    The primary goal of the project was to develop protein-templated approaches for the synthesis and directed assembly of semiconductor nanomaterials that are efficient for visible light absorption and hydrogen production. In general, visible-light-driven photocatalysis reactions exhibit low quantum efficiency for solar energy conversion primarily because of materials-related issues and limitations, such as the control of the band gap, band structure, photochemical stability, and available reactive surface area of the photocatalyst. Synthesis of multicomponent hierarchical nano-architectures, consisting of semiconductor nanoparticles (NPs) with desired optical properties fabricated to maximize spatial proximity for optimum electron and energy transfer represents an attractive route for addressing the problem. Virus capsids are highly symmetrical, self-assembling protein cage nanoparticles that exist in a range of sizes and symmetries. Selective deposition of inorganic, by design, at specific locations on virus capsids affords precise control over the size, spacing, and assembly of nanomaterials, resulting in uniform and reproducible nano-architectures. We utilized the self-assembling capabilities of the 420 subunit, 60 nm icosahedral, P22 virus capsid to direct the nucleation, growth, and proximity of a range of component materials. Controlled fabrication on the exterior of the temperature stable shell was achieved by genetically encoding specific binding peptides into an externally exposed loop which is displayed on each of the 420 coat protein subunits. Localization of complimentary materials to the interior of the particle was achieved through the use “scaffolding-fusion proteins. The scaffolding domain drives coat protein polymerization resulting in a coat protein shell surrounding a core of approximately 300 scaffolding/fusion molecules. The fusion domain comprises a peptide which specifically binds the semiconductor material of interest.

  3. Ultrastructural Evidences of Hepatitis B Infection in Human Liver Biopsies Disclose Complex Assembly and Morphogenesis Pathways for Hepatitis B Virus

    Directory of Open Access Journals (Sweden)

    Viviana Falcon

    2008-01-01

    Full Text Available Despite of recent advances on acknowledge of hepatitis B virus (HBV structure and biology, little is known about the morphogenesis and release of virions. In this study, the ultrastructural analysis of HBV components in liver biopsies from chronically HBV-infected patients disclosed complex assembly and morphogenesis pathways for HBV. HBV core (HBcAg and surface (HBsAg antigens were specifically identified in all liver biopsies from HVB-infected patients. HBcAg containing core-like particles 24-28 nm in diameter were observed both in nucleus and cytoplasm of hepatocytes. Dane’s-like particles were detected either budding to or into the lumen of ER close to HBsAg containing tubular structures. Besides, Dane’s-like particles were detected in different vesicular compartments resembling multivesicular endosomes. Other kind of enveloped HBV-like particles similar to the previously described cobra-shaped and horn-shaped particles were also observed in hepatocytes. Some of these particles were connected to the vesicle membrane through a stalk 20-22 nm in diameter. On the other hand, spherical subviral particles (SVP were frequently observed in cytoplasmic vesicles. Moreover, a minor proportion of enveloped HBV-like particles budding through the plasma membrane to the extracellular space and bile canaliculi were detected. Interestingly, Dane’s-like particles in the bile canaliculi and entering into ductular-like cells were shown. Strikingly, Dane’s-like particles close to tubular structures and specific immunolabeling for HBcAg both in cytoplasm and nuclei of stellate-like cells were detected. Remarkably, HVB-like particles appeared entering hepatocytes from large cytoplasmic processes of fibrocytes raising the interesting possibility of a cell to cell passage of HBV through direct transcellular migration.

  4. MALDI-imaging enables direct observation of kinetic and thermodynamic products of mixed peptide fiber assembly.

    Science.gov (United States)

    Medini, Karima; West, Brandi; Williams, David E; Brimble, Margaret A; Gerrard, Juliet A

    2017-02-04

    Controlling the self-assembly of multicomponent systems provides a key to designing new materials and understanding the molecular complexity of biology. Here, we demonstrate the first use of MALDI-imaging to characterize a multicomponent self-assembling peptide fiber. Observations of mixed peptide systems over time demonstrate how simple sequence variation can change the balance between kinetic and thermodynamic products.

  5. A new and efficient multicomponent solid-phase synthesis of 2-acylaminomethylthiazoles

    NARCIS (Netherlands)

    Henkel, Bernd; Sax, Michael; Dömling, Alexander

    2003-01-01

    A new multicomponent reaction (MCR) for the preparation of 2-substituted thiazole libraries using Rink amide resin is described. Thiazoles are assembled in a one-pot MCR of a thiocarboxylic acid, aldehyde, 3-(N,N-dimethylamino)-2-isocyanoacrylate with a resin-bound primary amine. Aliphatic and aroma

  6. Fluctuating multicomponent lattice Boltzmann model.

    Science.gov (United States)

    Belardinelli, D; Sbragaglia, M; Biferale, L; Gross, M; Varnik, F

    2015-02-01

    Current implementations of fluctuating lattice Boltzmann equations (FLBEs) describe single component fluids. In this paper, a model based on the continuum kinetic Boltzmann equation for describing multicomponent fluids is extended to incorporate the effects of thermal fluctuations. The thus obtained fluctuating Boltzmann equation is first linearized to apply the theory of linear fluctuations, and expressions for the noise covariances are determined by invoking the fluctuation-dissipation theorem directly at the kinetic level. Crucial for our analysis is the projection of the Boltzmann equation onto the orthonormal Hermite basis. By integrating in space and time the fluctuating Boltzmann equation with a discrete number of velocities, the FLBE is obtained for both ideal and nonideal multicomponent fluids. Numerical simulations are specialized to the case where mean-field interactions are introduced on the lattice, indicating a proper thermalization of the system.

  7. Potential Theory of Multicomponent Adsorption

    DEFF Research Database (Denmark)

    Shapiro, Alexander; Stenby, Erling Halfdan

    1998-01-01

    We developed a theory of multicomponent adsorption on the basis of the potential concept originally suggested by Polanyi. The mixture is considered as a heterogeneous substance segregated in the external field emitted by the adsorbent. The same standard equation of state, with no additional fitting...... parameters, is used for the segregated and for the bulk phases. With this approach, few parameters are needed to correlate pure component adsorption isotherms. These parameters may be used to predict adsorption equilibria of multicomponent mixtures without additional adjustment. A connection between...... the potential theory and the spreading pressure concept is established, and problems of the theory consistency are studied. Numerical algorithms are suggested for evaluation of the segregated state of the mixture in the potential field of adsorption forces. Comparison with experimental data shows good agreement...

  8. The Drosophila PRR GNBP3 assembles effector complexes involved in antifungal defenses independently of its Toll-pathway activation function.

    NARCIS (Netherlands)

    Matskevich, A.A.; Quintin, J.; Ferrandon, D.

    2010-01-01

    The Drosophila Toll-signaling pathway controls the systemic antifungal host response. Gram-negative binding protein 3 (GNBP3), a member of the beta-glucan recognition protein family senses fungal infections and activates this pathway. A second detection system perceives the activity of proteolytic f

  9. Soluble Oligomers of the Pore-forming Toxin Cytolysin A from Escherichia coli Are Off-pathway Products of Pore Assembly.

    Science.gov (United States)

    Roderer, Daniel; Benke, Stephan; Schuler, Benjamin; Glockshuber, Rudi

    2016-03-11

    The α-pore-forming toxin Cytolysin A (ClyA) is responsible for the hemolytic activity of various Escherichia coli and Salmonella enterica strains. Soluble ClyA monomers spontaneously assemble into annular dodecameric pore complexes upon contact with membranes or detergent. At ClyA monomer concentrations above ∼100 nm, the rate-limiting step in detergent- or membrane- induced pore assembly is the unimolecular reaction from the monomer to the assembly-competent protomer, which then oligomerizes rapidly to active pore complexes. In the absence of detergent, ClyA slowly forms soluble oligomers. Here we show that soluble ClyA oligomers cannot form dodecameric pore complexes after the addition of detergent and are hemolytically inactive. In addition, we demonstrate that the natural cysteine pair Cys-87/Cys-285 of ClyA forms a disulfide bond under oxidizing conditions and that both the oxidized and reduced ClyA monomers assemble to active pores via the same pathway in the presence of detergent, in which an unstructured, monomeric intermediate is transiently populated. The results show that the oxidized ClyA monomer assembles to pore complexes about one order of magnitude faster than the reduced monomer because the unstructured intermediate of oxidized ClyA is less stable and dissolves more rapidly than the reduced intermediate. Moreover, we show that oxidized ClyA forms soluble, inactive oligomers in the absence of detergent much faster than the reduced monomer, providing an explanation for several contradictory reports in which oxidized ClyA had been described as inactive.

  10. A Multicomponent Latent Trait Model for Diagnosis

    Science.gov (United States)

    Embretson, Susan E.; Yang, Xiangdong

    2013-01-01

    This paper presents a noncompensatory latent trait model, the multicomponent latent trait model for diagnosis (MLTM-D), for cognitive diagnosis. In MLTM-D, a hierarchical relationship between components and attributes is specified to be applicable to permit diagnosis at two levels. MLTM-D is a generalization of the multicomponent latent trait…

  11. A Multicomponent Animal Virus Isolated from Mosquitoes.

    Science.gov (United States)

    Ladner, Jason T; Wiley, Michael R; Beitzel, Brett; Auguste, Albert J; Dupuis, Alan P; Lindquist, Michael E; Sibley, Samuel D; Kota, Krishna P; Fetterer, David; Eastwood, Gillian; Kimmel, David; Prieto, Karla; Guzman, Hilda; Aliota, Matthew T; Reyes, Daniel; Brueggemann, Ernst E; St John, Lena; Hyeroba, David; Lauck, Michael; Friedrich, Thomas C; O'Connor, David H; Gestole, Marie C; Cazares, Lisa H; Popov, Vsevolod L; Castro-Llanos, Fanny; Kochel, Tadeusz J; Kenny, Tara; White, Bailey; Ward, Michael D; Loaiza, Jose R; Goldberg, Tony L; Weaver, Scott C; Kramer, Laura D; Tesh, Robert B; Palacios, Gustavo

    2016-09-14

    RNA viruses exhibit a variety of genome organization strategies, including multicomponent genomes in which each segment is packaged separately. Although multicomponent genomes are common among viruses infecting plants and fungi, their prevalence among those infecting animals remains unclear. We characterize a multicomponent RNA virus isolated from mosquitoes, designated Guaico Culex virus (GCXV). GCXV belongs to a diverse clade of segmented viruses (Jingmenvirus) related to the prototypically unsegmented Flaviviridae. The GCXV genome comprises five segments, each of which appears to be separately packaged. The smallest segment is not required for replication, and its presence is variable in natural infections. We also describe a variant of Jingmen tick virus, another Jingmenvirus, sequenced from a Ugandan red colobus monkey, thus expanding the host range of this segmented and likely multicomponent virus group. Collectively, this study provides evidence for the existence of multicomponent animal viruses and their potential relevance for animal and human health.

  12. Novel transcriptome assembly and comparative toxicity pathway analysis in mahi-mahi (Coryphaena hippurus) embryos and larvae exposed to Deepwater Horizon oil

    Science.gov (United States)

    Xu, Elvis Genbo; Mager, Edward M.; Grosell, Martin; Hazard, E. Starr; Hardiman, Gary; Schlenk, Daniel

    2017-03-01

    The impacts of Deepwater Horizon (DWH) oil on morphology and function during embryonic development have been documented for a number of fish species, including the economically and ecologically important pelagic species, mahi-mahi (Coryphaena hippurus). However, further investigations on molecular events and pathways responsible for developmental toxicity have been largely restricted due to the limited molecular data available for this species. We sought to establish the de novo transcriptomic database from the embryos and larvae of mahi-mahi exposed to water accommodated fractions (HEWAFs) of two DWH oil types (weathered and source oil), in an effort to advance our understanding of the molecular aspects involved during specific toxicity responses. By high throughput sequencing (HTS), we obtained the first de novo transcriptome of mahi-mahi, with 60,842 assembled transcripts and 30,518 BLAST hits. Among them, 2,345 genes were significantly regulated in 96hpf larvae after exposure to weathered oil. With comparative analysis to a reference-transcriptome-guided approach on gene ontology and tox-pathways, we confirmed the novel approach effective for exploring tox-pathways in non-model species, and also identified a list of co-expressed genes as potential biomarkers which will provide information for the construction of an Adverse Outcome Pathway which could be useful in Ecological Risk Assessments.

  13. The cholesterol-dependent cytolysin signature motif: a critical element in the allosteric pathway that couples membrane binding to pore assembly.

    Directory of Open Access Journals (Sweden)

    Kelley J Dowd

    Full Text Available The cholesterol-dependent cytolysins (CDCs constitute a family of pore-forming toxins that contribute to the pathogenesis of a large number of Gram-positive bacterial pathogens.The most highly conserved region in the primary structure of the CDCs is the signature undecapeptide sequence (ECTGLAWEWWR. The CDC pore forming mechanism is highly sensitive to changes in its structure, yet its contribution to the molecular mechanism of the CDCs has remained enigmatic. Using a combination of fluorescence spectroscopic methods we provide evidence that shows the undecapeptide motif of the archetype CDC, perfringolysin O (PFO, is a key structural element in the allosteric coupling of the cholesterol-mediated membrane binding in domain 4 (D4 to distal structural changes in domain 3 (D3 that are required for the formation of the oligomeric pore complex. Loss of the undecapeptide function prevents all measurable D3 structural transitions, the intermolecular interaction of membrane bound monomers and the assembly of the oligomeric pore complex. We further show that this pathway does not exist in intermedilysin (ILY, a CDC that exhibits a divergent undecapeptide and that has evolved to use human CD59 rather than cholesterol as its receptor. These studies show for the first time that the undecapeptide of the cholesterol-binding CDCs forms a critical element of the allosteric pathway that controls the assembly of the pore complex.

  14. Identification of a major intermediate along the self-assembly pathway of an icosahedral viral capsid by using an analytical model of a spherical patch.

    Science.gov (United States)

    Law-Hine, Didier; Zeghal, Mehdi; Bressanelli, Stéphane; Constantin, Doru; Tresset, Guillaume

    2016-08-10

    Viruses are astonishing edifices in which hundreds of molecular building blocks fit into the final structure with pinpoint accuracy. We established a robust kinetic model accounting for the in vitro self-assembly of a capsid shell derived from an icosahedral plant virus by using time-resolved small-angle X-ray scattering (TR-SAXS) data at high spatiotemporal resolution. By implementing an analytical model of a spherical patch into a global fitting algorithm, we managed to identify a major intermediate species along the self-assembly pathway. With a series of data collected at different protein concentrations, we showed that free dimers self-assembled into a capsid through an intermediate resembling a half-capsid. The typical lifetime of the intermediate was a few seconds and yet the presence of so large an oligomer was not reported before. The progress in instrumental detection along with the development of powerful algorithms for data processing contribute to shedding light on nonequilibrium processes in highly complex systems such as viruses.

  15. Supporting First Year Alternatively Certified Urban and Rural Intern Teachers through a Multicomponent Distance Induction Program

    Science.gov (United States)

    Gresko, Jennifer A.

    2013-01-01

    The pathway for entering the K-12 classroom as a teacher varies compared to what was once the traditional model of teacher preparation. In this mixed-methods action research study, I explore supporting first year alternatively certified urban and rural intern teachers through a multicomponent distance induction program. The induction model in this…

  16. Effect of uncoupler on assembly pathway for pigment-binding protein of bacterial photosynthetic membranes. [Rhodobacter capsulatus

    Energy Technology Data Exchange (ETDEWEB)

    Dierstein, R.; Drews, G.

    1986-10-01

    The uncoupler carbonylcyanide m-chlorophenylhydrazone (CCCP) was used to investigate membrane protein assembly in the phototrophic bacterium Rhodobacter capsulatus. As found for Escherichia coli and mitochondrial proteins, assembly across the bacterial photosynthetic membranes was sensitive to CCCP. At uncoupler concentrations which were sufficient to block the export of the periplasmic cytochrome c/sub 2/ and an outer membrane protein, the integration of pigment-binding protein into the photosynthetic apparatus was abolished. The unassembled protein was detected on the inner surface of the intracytoplasmic membrane. After inactivation of CCCP, accumulated protein continued insertion into the membrane. The data suggest that after binding to the cytoplasmic face of the membrane (i), translocation of protein into a transmembrane orientation takes place (ii), which is a prerequisite for the formation of a functional pigment-protein complex (iii).

  17. Functionalized self-assembling peptide improves INS-1 β-cell function and proliferation via the integrin/FAK/ERK/cyclin pathway

    Directory of Open Access Journals (Sweden)

    Liu JP

    2015-05-01

    Full Text Available Jingping Liu,1 Shuyun Liu,1 Younan Chen,1 Xiaojun Zhao,2 Yanrong Lu,1 Jingqiu Cheng1 1Key Laboratory of Transplant Engineering and Immunology, Regenerative Medicine Research Center, 2Laboratory of Nanomedicine, West China Hospital, Sichuan University, Chengdu, People’s Republic of China Abstract: Islet transplantation is considered to be a curative treatment for type 1 diabetes mellitus. However, disruption of the extracellular matrix (ECM leads to β-cell destruction and graft dysfunction. In this study, we developed a functionalized self-assembling peptide, KLD-F, with ECM mimic motifs derived from fibronectin and collagen IV, and evaluated its effect on β-cell function and proliferation. Atomic force microscopy and rheological results showed that KLD-F could self-assemble into a nanofibrous scaffold and change into a hydrogel in physiological saline condition. In a three-dimensional cell culture model, KLD-F improved ECM remodeling and cell-cell adhesion of INS-1 β-cells by upregulation of E-cadherin, fibronectin, and collagen IV. KLD-F also enhanced glucose-stimulated insulin secretion and expression of β-cell function genes, including Glut2, Ins1, MafA, and Pdx-1 in INS-1 cells. Moreover, KLD-F promoted proliferation of INS-1 β-cells and upregulated Ki67 expression by mediating cell cycle progression. In addition, KLD-F improved β-cell function and proliferation via an integrin/focal adhesion kinase/extracellular signal-regulated kinase/cyclin D pathway. This study highlights the fact that the β-cell-ECM interaction reestablished with this functionalized self-assembling peptide is a promising method to improve the therapeutic efficacy of islet transplantation. Keywords: extracellular matrix, self-assembling peptide, islet transplantation, β-cell proliferation, insulin secretion

  18. Insights Into The Sesquiterpenoid Pathway By Metabolic Profiling And De Novo Transcriptome Assembly Of Stem-Chicory (Cichorium intybus Cultigroup 'Catalogna'.

    Directory of Open Access Journals (Sweden)

    Giulio Testone

    2016-11-01

    Full Text Available Stem-chicory of the 'Catalogna' group is a vegetable consumed for bitter-flavored stems. Type and levels of bitter sesquiterpene lactones (STLs participate in conferring bitterness in vegetables. The content of lactucin- and lactucopocrin-like STLs was higher in 'Molfettese' than 'Galatina' landrace stalks, regardless of the cultivation sites, consistently with bitterness scores and gustative differences. The 'Galatina' transcriptome assembly resulted in 58,872 unigenes, 77% of which were annotated, paving the way to molecular investigation of the STL pathway. Comparative transcriptome analysis allowed the identification of 69,352 SNPs and of 1,640 differentially expressed genes that maintained the pattern independently of the site. Enrichment analyses revealed that 4 out of 29 unigenes were up-regulated in 'Molfettese' vs 'Galatina' within the sesquiterpenoid pathway. The expression of two germacrene A -synthase (GAS and one -oxidase (GAO genes of the costunolide branch correlated positively with the contents of lactucin-like molecules, supporting that STL biosynthesis regulation occurs at the transcriptional level. Finally, 46 genes encoding transcription factors (TFs maintained a differential expression pattern between the two varieties regardless of the growth site; correlation analyses among TFs, GAS, GAO gene expressions and STLs contents suggest that one MYB and one bHLH may act in the pathway.

  19. ANALYZING OF MULTICOMPONENT UNDERSAMPLED SIGNALS BY HAF

    Institute of Scientific and Technical Information of China (English)

    Tao Ran; Shan Tao; Zhou Siyong; Wang Yue

    2001-01-01

    The phenomenon of frequency ambiguity may appear in radar or communication systems. S. Barbarossa(1991) had unwrapped the frequency ambiguity of single component undersampled signals by Wigner-Ville distribution(WVD). But there has no any effective algorithm to analyze multicomponent undersampled signals by now. A new algorithm to analyze multicomponent undersampled signals by high-order ambiguity function (HAF) is proposed hera HAF analyzes polynomial phase signals by the method of phase rank reduction, its advantage is that it does not have boundary effect and is not sensitive to the cross-items of multicomponent signals.The simulation results prove the effectiveness of HAF algorithm.

  20. Particle Lithography Enables Fabrication of Multicomponent Nanostructures

    Science.gov (United States)

    Lin, Wei-feng; Swartz, Logan A.; Li, Jie-Ren; Liu, Yang; Liu, Gang-yu

    2014-01-01

    Multicomponent nanostructures with individual geometries have attracted much attention because of their potential to carry out multiple functions synergistically. The current work reports a simple method using particle lithography to fabricate multicomponent nanostructures of metals, proteins, and organosiloxane molecules, each with its own geometry. Particle lithography is well-known for its capability to produce arrays of triangular-shaped nanostructures with novel optical properties. This paper extends the capability of particle lithography by combining a particle template in conjunction with surface chemistry to produce multicomponent nanostructures. The advantages and limitations of this approach will also be addressed. PMID:24707328

  1. Novel energy sharing collisions of multicomponent solitons

    Indian Academy of Sciences (India)

    T Kanna; K Sakkaravarthi; M Vijayajayanthi

    2015-11-01

    In this paper, we discuss the fascinating energy sharing collisions of multicomponent solitons in certain incoherently coupled and coherently coupled nonlinear Schrödinger-type equations arising in the context of nonlinear optics.

  2. High Pressure Multicomponent Adsorption in Porous Media

    DEFF Research Database (Denmark)

    Shapiro, Alexander; Stenby, Erling Halfdan

    1999-01-01

    We analyse adsorption of a multicomponent mixture at high pressure on the basis of the potential theory of adsorption. The adsorbate is considered as a segregated mixture in the external field produced by a solid adsorbent. we derive an analytical equation for the thickness of a multicomponent film...... close to a dew point. This equation (asymptotic adsorption equation, AAE) is a first order approximation with regard to the distance from a phase envelope....

  3. Pathway-Dependent Post-assembly Modification of an Anthracene-Edged M(II)4L6 Tetrahedron.

    Science.gov (United States)

    Ronson, Tanya K; Pilgrim, Ben S; Nitschke, Jonathan R

    2016-08-24

    Fe(II)4L6 tetrahedral cage 1 undergoes post-assembly modification (PAM) via a Diels-Alder cycloaddition of the anthracene panels of the cage with tetracyanoethylene (TCNE). The modified cage 2 possesses an enclosed cavity suitable for encapsulation of the fullerene C60, whereas original cage 1 forms a unique covalent adduct through a Diels-Alder cycloaddition of three of its anthracene ligands with C60. This adduct undergoes further PAM via reaction of the remaining three ligands with TCNE, enabling the isolation of two distinct products depending on the order of addition of C60 and TCNE. Modified cage 2 was also able to bind an anionic guest, [Co(C2B9H11)2](-), which was not encapsulated by the original cage, demonstrating the potential of PAM for tuning the binding properties of supramolecular hosts.

  4. Selective preparation of elusive and alternative single component polymorphic solid forms through multi-component crystallisation routes.

    Science.gov (United States)

    Thomas, Lynne H; Wales, Craig; Wilson, Chick C

    2016-05-31

    A transferable, simple, method for producing previously elusive and novel polymorphic forms of important active pharmaceutical ingredients (APIs; paracetamol (acetaminophen), piroxicam and piracetam) is demonstrated. Nitrogen heterocyclic co-molecules are employed to influence the self-assembly crystallisation process in a multi-component environment. Previously unknown solvates have also been synthesised by this method.

  5. A metabolic pathway assembled by enzyme selection may support herbivory of leaf-cutter ants on plant starch.

    Science.gov (United States)

    Bacci, Maurício; Bueno, Odair Correa; Rodrigues, André; Pagnocca, Fernando Carlos; Somera, Alexandre Favarin; Silva, Aline

    2013-05-01

    Mutualistic associations shape the evolution in different organism groups. The association between the leaf-cutter ant Atta sexdens and the basidiomycete fungus Leucoagaricus gongylophorus has enabled them to degrade starch from plant material generating glucose, which is a major food source for both mutualists. Starch degradation is promoted by enzymes contained in the fecal fluid that ants deposit on the fungus culture in cut leaves inside the nests. To understand the dynamics of starch degradation in ant nests, we purified and characterized starch degrading enzymes from the ant fecal fluid and from laboratory cultures of L. gongylophorus and found that the ants intestine positively selects fungal α-amylase and a maltase likely produced by the ants, as a negative selection is imposed to fungal maltase and ant α-amylases. Selected enzymes are more resistant to catabolic repression by glucose and proposed to structure a metabolic pathway in which the fungal α-amylase initiates starch catalysis to generate byproducts which are sequentially degraded by the maltase to produce glucose. The pathway is responsible for effective degradation of starch and proposed to represent a major evolutionary innovation enabling efficient starch assimilation from plant material by leaf-cutters.

  6. A Wnt-planar polarity pathway instructs neurite branching by restricting F-actin assembly through endosomal signaling

    Science.gov (United States)

    Chen, Chun-Hao; Liao, Chien-Po

    2017-01-01

    Spatial arrangement of neurite branching is instructed by both attractive and repulsive cues. Here we show that in C. elegans, the Wnt family of secreted glycoproteins specify neurite branching sites in the PLM mechanosensory neurons. Wnts function through MIG-1/Frizzled and the planar cell polarity protein (PCP) VANG-1/Strabismus/Vangl2 to restrict the formation of F-actin patches, which mark branching sites in nascent neurites. We find that VANG-1 promotes Wnt signaling by facilitating Frizzled endocytosis and genetically acts in a common pathway with arr-1/β-arrestin, whose mutation results in defective PLM branching and F-actin patterns similar to those in the Wnt, mig-1 or vang-1 mutants. On the other hand, the UNC-6/Netrin pathway intersects orthogonally with Wnt-PCP signaling to guide PLM branch growth along the dorsal-ventral axis. Our study provides insights for how attractive and repulsive signals coordinate to sculpt neurite branching patterns, which are critical for circuit connectivity. PMID:28384160

  7. A novel pathway of cytochrome c biogenesis is involved in the assembly of the cytochrome b6f complex in arabidopsis chloroplasts.

    Science.gov (United States)

    Lezhneva, Lina; Kuras, Richard; Ephritikhine, Geneviève; de Vitry, Catherine

    2008-09-05

    We recently characterized a novel heme biogenesis pathway required for heme c(i)' covalent binding to cytochrome b6 in Chlamydomonas named system IV or CCB (cofactor assembly, complex C (b6f), subunit B (PetB)). To find out whether this CCB pathway also operates in higher plants and extend the knowledge of the c-type cytochrome biogenesis, we studied Arabidopsis insertion mutants in the orthologs of the CCB genes. The ccb1, ccb2, and ccb4 mutants show a phenotype characterized by a deficiency in the accumulation of the subunits of the cytochrome b6f complex and lack covalent heme binding to cytochrome b6. These mutants were functionally complemented with the corresponding wild type cDNAs. Using fluorescent protein reporters, we demonstrated that the CCB1, CCB2, CCB3, and CCB4 proteins are targeted to the chloroplast compartment of Arabidopsis. We have extended our study to the YGGT family, to which CCB3 belongs, by studying insertion mutants of two additional members of this family for which no mutants were previously characterized, and we showed that they are not functionally involved in the CCB system. Thus, we demonstrate the ubiquity of the CCB proteins in chloroplast heme c(i)' binding.

  8. A Novel Pathway of Cytochrome c Biogenesis Is Involved in the Assembly of the Cytochrome b6f Complex in Arabidopsis Chloroplasts*S⃞

    Science.gov (United States)

    Lezhneva, Lina; Kuras, Richard; Ephritikhine, Geneviève; de Vitry, Catherine

    2008-01-01

    We recently characterized a novel heme biogenesis pathway required for heme ci′ covalent binding to cytochrome b6 in Chlamydomonas named system IV or CCB (cofactor assembly, complex C (b6f), subunit B (PetB)). To find out whether this CCB pathway also operates in higher plants and extend the knowledge of the c-type cytochrome biogenesis, we studied Arabidopsis insertion mutants in the orthologs of the CCB genes. The ccb1, ccb2, and ccb4 mutants show a phenotype characterized by a deficiency in the accumulation of the subunits of the cytochrome b6f complex and lack covalent heme binding to cytochrome b6. These mutants were functionally complemented with the corresponding wild type cDNAs. Using fluorescent protein reporters, we demonstrated that the CCB1, CCB2, CCB3, and CCB4 proteins are targeted to the chloroplast compartment of Arabidopsis. We have extended our study to the YGGT family, to which CCB3 belongs, by studying insertion mutants of two additional members of this family for which no mutants were previously characterized, and we showed that they are not functionally involved in the CCB system. Thus, we demonstrate the ubiquity of the CCB proteins in chloroplast heme ci′ binding. PMID:18593701

  9. Dynamics of multicomponent lipid membranes

    Science.gov (United States)

    Camley, Brian Andrew

    We present theoretical and computational descriptions of the dynamics of multicomponent lipid bilayer membranes. These systems are both model systems for "lipid rafts" in cell membranes and interesting physical examples of quasi-two-dimensional fluids. Our chief tool is a continuum simulation that uses a phase field to track the composition of the membrane, and solves the hydrodynamic equations exactly using the appropriate Green's function (Oseen tensor) for the membrane. We apply this simulation to describe the diffusion of domains in phase-separated membranes, the dynamics of domain flickering, and the process of phase separation in lipid membranes. We then derive an analytical theory to describe domain flickering that is consistent with our simulation results, and use this to analyze experimental measurements of membrane domains. Through this method, we measure the membrane viscosity solely from fluorescence microscopy measurements. We study phase separation in quasi-two-dimensional membranes in depth with both simulations and scaling theory, and classify the different scaling regimes and morphologies, which differ from pure two-dimensional fluids. Our results may explain previous inconsistent measurements of the dynamical scaling exponent for phase separation in membranes. We also extend our theory beyond the simplest model, including the possibility that the membrane will be viscoelastic, as well as considering the inertia of the membrane and the fluid surrounding the membrane.

  10. Gold Nanoparticle Assemblies through Hydrogen-Bonded Supramolecular Mediators

    NARCIS (Netherlands)

    Kinge, Sachin S.; Crego-Calama, Mercedes; Reinhoudt, David N.

    2007-01-01

    The synthesis of spherical gold nanoparticle assemblies with multicomponent double rosette molecular boxes as mediators is presented. These nine-component hydrogen-bonded supramolecular structures held together by 36 hydrogen bonds induce gold nanoparticle assembly. The morphologies of the nanoparti

  11. Multicomponent liquid ion exchange with chabazite zeolites

    Energy Technology Data Exchange (ETDEWEB)

    Robinson, S.M.; Arnold, W.D. Jr.; Byers, C.W.

    1993-10-01

    In spite of the increasing commercial use of zeolites for binary and multicomponent sorption, the understanding of the basic mass-transfer processes associated with multicomponent zeolite ion-exchange systems is quite limited. This study was undertaken to evaluate Na-Ca-Mg-Cs-Sr ion exchange from an aqueous solution using a chabazite zeolite. Mass-transfer coefficients and equilibrium equations were determined from experimental batch-reactor data for single and multicomponent systems. The Langmuir isotherm was used to represent the equilibrium relationship for binary systems, and a modified Dubinin-Polyani model was used for the multicomponent systems. The experimental data indicate that diffusion through the microporous zeolite crystals is the primary diffusional resistance. Macropore diffusion also significantly contributes to the mass-transfer resistance. Various mass-transfer models were compared to the experimental data to determine mass-transfer coefficients. Effective diffusivities were obtained which accurately predicted experimental data using a variety of models. Only the model which accounts for micropore and macropore diffusion occurring in series accurately predicted multicomponent data using single-component diffusivities. Liquid and surface diffusion both contribute to macropore diffusion. Surface and micropore diffusivities were determined to be concentration dependent.

  12. Conscientiousness increases efficiency of multicomponent behavior.

    Science.gov (United States)

    Stock, Ann-Kathrin; Beste, Christian

    2015-10-27

    Many everyday situations require the flexible interruption and changing of different actions to achieve a goal. Several strategies can be applied to do so, but those requiring high levels of cognitive control seem to confer an efficiency (speed) advantage in situations requiring multi-component behavior. However, it is elusive in how far personality traits affect performance in such situations. Given that top-down control is an important aspect of personality and furthermore correlates with conscientiousness, N = 163 participants completed the NEO-FFI and performed an experimental (stop-change) paradigm assessing multicomponent behavior. Applying mathematical constraints to the behavioral data, we estimated the processing strategy of each individual. The results show that multicomponent behavior is selectively affected by conscientiousness which explained approximately 19% of the measured inter-individual behavioral variance. Conscientiousness should hence be seen as a major personality dimension modulating multicomponent behavior. Highly conscientious people showed a more effective, step-by-step processing strategy of different actions necessary to achieve a goal. In situations with simultaneous requirements, this strategy equipped them with an efficiency (speed) advantage towards individuals with lower conscientiousness. In sum, the results show that strategies and the efficiency with which people cope with situations requiring multicomponent behavior are strongly influenced by their personality.

  13. Charge transfer in multicomponent oxides

    Science.gov (United States)

    Kohan, A. F.; Ceder, G.

    1998-02-01

    The transfer of charge between different ions in an oxide plays an essential role in the stability of these compounds. Since small variations in charge can introduce large changes in the total energy, a correct description of this phenomenon is critical. In this work, we show that the ionic charge in oxides can strongly depend on its atomic environment. A model to assign point charges to atoms as a function of their atomic environment has recently been proposed for binary alloys [C. Wolverton, A. Zunger, S. Froyen, and S.-H. Wei, Phys. Rev. B 54, 7843 (1996)] and proven to be very successful in screened solids such as semiconductors and metals. Here, we extend this formalism to multicomponent oxides and we assess its applicability. The simple point-charge model predicts a linear relation between the charge on an atom and the number of unlike neighbors, and between the net value of the charge and the Coulomb field at a given site. The applicability of this approach is tested in a large-supercell self-consistent tight-binding calculation for a random Zr-Ca-O alloy. The observed fluctuations of the ionic charge about the average linear behavior (as a function of the number of unlike neighbors) was larger than 0.25 electrons even when many shells of atomic neighbors were considered in the fit. This variation is significant since it can introduce large errors in the electrostatic energy. On the other hand, for small absolute values of the charge, the ionic charge varied linearly with the Coulomb field, in agreement with previous findings. However, for large Coulomb fields, this function saturates at the formal chemical charge.

  14. Carbon nanotube-composite hydrogels promote intercalated disc assembly in engineered cardiac tissues through β1-integrin mediated FAK and RhoA pathway.

    Science.gov (United States)

    Sun, Hongyu; Tang, Jiajia; Mou, Yongchao; Zhou, Jing; Qu, Linlin; Duval, Kayla; Huang, Zhu; Lin, Ning; Dai, Ruiwu; Liang, Chengxiao; Chen, Zi; Tang, Lijun; Tian, Fuzhou

    2017-01-15

    Carbon nanotube (CNT)-based hydrogels have been shown to support cardiomyocyte growth and function. However, their role in cellular integrity among cardiomyocytes has not been studied in detail and the mechanisms underlying this process remain unclear. Here, single walled CNTs incorporated into gelatin with methacrylate anhydride (CNT/GelMA) hydrogels were utilized to construct cardiac tissues, which enhanced cardiomyocyte adhesion and maturation. Furthermore, through the use of immunohistochemical staining, transmission electron microscopy and intracellular calcium transient measurement, the incorporation of CNTs into the scaffolds was observed to markedly enhance the assembly and formation in the cardiac constructs. Importantly, we further explored the underlying mechanism behind these effects through the use of immunohistochemical staining and western blotting. The β1-integrin-mediated FAK and RhoA signaling pathways were found to be responsible for CNT-induced upregulation of electrical and mechanical junction proteins respectively. Together, our study provides new insights into the facilitative effects of CNTs on ID formation, which has important significance for improving the quality of engineered cardiac tissue and applying them to cardiac regenerative therapies. Currently, the bottleneck to engineering cardiac tissues (ECTs) for cardiac regeneration is the lack of efficient cellular integrity among adjacent cells, especially the insufficient remodeling of intercalated discs (IDs) in ECTs. Recently, carbon nanotube (CNT) hydrogels provide an advantageous supporting microenvironment and therefore benefit greatly the functional performance of ECTs. Although their beneficial effect in modulating ECT performance is evident, the influence of CNTs on structural integrity of ECTs has not been studied in detail, and the mechanisms underlying the process remain to be determined. Here, we utilized carbon nanotube incorporated into gelatin with methacrylate anhydride

  15. De novo assembly and transcriptome analysis of the rubber tree (Hevea brasiliensis and SNP markers development for rubber biosynthesis pathways.

    Directory of Open Access Journals (Sweden)

    Camila Campos Mantello

    Full Text Available Hevea brasiliensis (Willd. Ex Adr. Juss. Muell.-Arg. is the primary source of natural rubber that is native to the Amazon rainforest. The singular properties of natural rubber make it superior to and competitive with synthetic rubber for use in several applications. Here, we performed RNA sequencing (RNA-seq of H. brasiliensis bark on the Illumina GAIIx platform, which generated 179,326,804 raw reads on the Illumina GAIIx platform. A total of 50,384 contigs that were over 400 bp in size were obtained and subjected to further analyses. A similarity search against the non-redundant (nr protein database returned 32,018 (63% positive BLASTx hits. The transcriptome analysis was annotated using the clusters of orthologous groups (COG, gene ontology (GO, Kyoto Encyclopedia of Genes and Genomes (KEGG, and Pfam databases. A search for putative molecular marker was performed to identify simple sequence repeats (SSRs and single nucleotide polymorphisms (SNPs. In total, 17,927 SSRs and 404,114 SNPs were detected. Finally, we selected sequences that were identified as belonging to the mevalonate (MVA and 2-C-methyl-D-erythritol 4-phosphate (MEP pathways, which are involved in rubber biosynthesis, to validate the SNP markers. A total of 78 SNPs were validated in 36 genotypes of H. brasiliensis. This new dataset represents a powerful information source for rubber tree bark genes and will be an important tool for the development of microsatellites and SNP markers for use in future genetic analyses such as genetic linkage mapping, quantitative trait loci identification, investigations of linkage disequilibrium and marker-assisted selection.

  16. De novo assembly and transcriptome analysis of the rubber tree (Hevea brasiliensis) and SNP markers development for rubber biosynthesis pathways.

    Science.gov (United States)

    Mantello, Camila Campos; Cardoso-Silva, Claudio Benicio; da Silva, Carla Cristina; de Souza, Livia Moura; Scaloppi Junior, Erivaldo José; de Souza Gonçalves, Paulo; Vicentini, Renato; de Souza, Anete Pereira

    2014-01-01

    Hevea brasiliensis (Willd. Ex Adr. Juss.) Muell.-Arg. is the primary source of natural rubber that is native to the Amazon rainforest. The singular properties of natural rubber make it superior to and competitive with synthetic rubber for use in several applications. Here, we performed RNA sequencing (RNA-seq) of H. brasiliensis bark on the Illumina GAIIx platform, which generated 179,326,804 raw reads on the Illumina GAIIx platform. A total of 50,384 contigs that were over 400 bp in size were obtained and subjected to further analyses. A similarity search against the non-redundant (nr) protein database returned 32,018 (63%) positive BLASTx hits. The transcriptome analysis was annotated using the clusters of orthologous groups (COG), gene ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and Pfam databases. A search for putative molecular marker was performed to identify simple sequence repeats (SSRs) and single nucleotide polymorphisms (SNPs). In total, 17,927 SSRs and 404,114 SNPs were detected. Finally, we selected sequences that were identified as belonging to the mevalonate (MVA) and 2-C-methyl-D-erythritol 4-phosphate (MEP) pathways, which are involved in rubber biosynthesis, to validate the SNP markers. A total of 78 SNPs were validated in 36 genotypes of H. brasiliensis. This new dataset represents a powerful information source for rubber tree bark genes and will be an important tool for the development of microsatellites and SNP markers for use in future genetic analyses such as genetic linkage mapping, quantitative trait loci identification, investigations of linkage disequilibrium and marker-assisted selection.

  17. Strategies for innovation in multicomponent reaction design.

    Science.gov (United States)

    Ganem, Bruce

    2009-03-17

    By generating structural complexity in a single step from three or more reactants, multicomponent reactions (MCRs) make it possible to synthesize target compounds with greater efficiency and atom economy. The history of such reactions can be traced to the mid-19th century when Strecker first produced alpha-aminonitriles from the condensation of aldehydes with ammonia and hydrogen cyanide. Recently, academic chemists have renewed their interest in MCRs. In part, the pharmaceutical industry has fueled this resurgence because of the growing need to assemble libraries of structurally complex substances for evaluation as lead compounds in drug discovery and development programs. The application of MCRs to that increasingly important objective remains limited by the relatively small number of such reactions that can be broadly applied to prepare biologically relevant or natural-product-like molecular frameworks. We were interested in applying logic-based approaches, such as our single reactant replacement (SRR) approach, as a way both to improve known MCRs and to design new multiple-component routes to bioactive structures. This Account provides several examples that illustrate the use of SRR with known MCRs as starting points for synthetic innovation in this area. As part of our working hypothesis, we initially explored strategies for engineering improvements into known MCRs, either by increasing the dimensionality--that is, changing an n-component to an (n + 1)-component reaction--or broadening the scope of useful input structures, or both. By exhaustively applying retrosynthetic analysis to the cognate MCR to identify and exploit alternative entry points into the overall reaction manifold, we have devised several such re-engineered MCRs. Serendipitous findings have also augmented the yield of useful developments from our logic-inspired approach. In some cases, we have identified surprising links between different compound families that provide useful new entry points

  18. Multicomponent equations of state for electrolytes

    DEFF Research Database (Denmark)

    Lin, Yi; Thomsen, Kaj; Hemptinne, Jean-Charles de

    2007-01-01

    Four equations of state have been implemented and evaluated for multicomponent electrolyte solutions at 298.15 K and 1 bar. The equations contain terms accounting for short-range and long-range interactions in electrolyte solutions. Short range interactions are described by one of the three...... equations of state, Peng-Robinson, Soave-Redlich-Kwong, or Cubic-Plus-Association (CPA). Long-range interactions are described by either the simplified mean spherical approximation (MSA) solution of the Ornstein-Zernicke equation or the simplified Debye-Huchel term. An optional Born term is added...... to these electrostatic terms. The resulting electrolyte equations of state were tested by determining the optimal model parameters for the multicomponent test system consisting of H2O, Na+, H+, Ca2+, Cl-, OH-, SO42-. To describe the thermodynamics of this multicomponent system, ion specific parameters were determined...

  19. Benchmarks for multicomponent diffusion and electrochemical migration

    DEFF Research Database (Denmark)

    Rasouli, Pejman; Steefel, Carl I.; Mayer, K. Ulrich

    2015-01-01

    In multicomponent electrolyte solutions, the tendency of ions to diffuse at different rates results in a charge imbalance that is counteracted by the electrostatic coupling between charged species leading to a process called “electrochemical migration” or “electromigration.” Although not commonly...... not been published to date. This contribution provides a set of three benchmark problems that demonstrate the effect of electric coupling during multicomponent diffusion and electrochemical migration and at the same time facilitate the intercomparison of solutions from existing reactive transport codes...

  20. Multiphase, multicomponent phase behavior prediction

    Science.gov (United States)

    Dadmohammadi, Younas

    Accurate prediction of phase behavior of fluid mixtures in the chemical industry is essential for designing and operating a multitude of processes. Reliable generalized predictions of phase equilibrium properties, such as pressure, temperature, and phase compositions offer an attractive alternative to costly and time consuming experimental measurements. The main purpose of this work was to assess the efficacy of recently generalized activity coefficient models based on binary experimental data to (a) predict binary and ternary vapor-liquid equilibrium systems, and (b) characterize liquid-liquid equilibrium systems. These studies were completed using a diverse binary VLE database consisting of 916 binary and 86 ternary systems involving 140 compounds belonging to 31 chemical classes. Specifically the following tasks were undertaken: First, a comprehensive assessment of the two common approaches (gamma-phi (gamma-ϕ) and phi-phi (ϕ-ϕ)) used for determining the phase behavior of vapor-liquid equilibrium systems is presented. Both the representation and predictive capabilities of these two approaches were examined, as delineated form internal and external consistency tests of 916 binary systems. For the purpose, the universal quasi-chemical (UNIQUAC) model and the Peng-Robinson (PR) equation of state (EOS) were used in this assessment. Second, the efficacy of recently developed generalized UNIQUAC and the nonrandom two-liquid (NRTL) for predicting multicomponent VLE systems were investigated. Third, the abilities of recently modified NRTL model (mNRTL2 and mNRTL1) to characterize liquid-liquid equilibria (LLE) phase conditions and attributes, including phase stability, miscibility, and consolute point coordinates, were assessed. The results of this work indicate that the ϕ-ϕ approach represents the binary VLE systems considered within three times the error of the gamma-ϕ approach. A similar trend was observed for the for the generalized model predictions using

  1. The Rab GTPase Rab8 as a shared regulator of ciliogenesis and immune synapse assembly: From a conserved pathway to diverse cellular structures

    Science.gov (United States)

    Patrussi, Laura; Baldari, Cosima T.

    2016-01-01

    ABSTRACT Rab GTPases, which form the largest branch of the Ras GTPase superfamily, regulate almost every step of vesicle-mediated trafficking. Among them, Rab8 is an essential participant in primary cilium formation. In a report recently published in the Journal of Cell Science, Finetti and colleagues identify Rab8 as a novel player in vesicular traffic in the non-ciliated T lymphocytes, which contributes to the assembly of the specialized signaling platform known as the immune synapse. By interacting with the v-SNARE VAMP-3, Rab8 is indeed responsible for the final docking/fusion step in T cell receptor (TCR) recycling to the immune synapse. A second important take-home message which comes to light from this work is that VAMP-3 also interacts with Rab8 at the base of the cilium in NIH-3T3 cells, where it regulates ciliary growth and targeting of Smoothened at the plasma membrane. Hence the data presented in this report, in addition to identifying Rab8 as a novel player in vesicular traffic to the immune synapse, reveal how both ciliated and non-ciliated cells take advantage of a conserved pathway to build highly specific cellular structures. PMID:26587735

  2. Self-Assembled Tetrahedral DNA Nanostructures Promote Adipose-Derived Stem Cell Migration via lncRNA XLOC 010623 and RHOA/ROCK2 Signal Pathway.

    Science.gov (United States)

    Shi, Sirong; Peng, Qiang; Shao, Xiaoru; Xie, Jing; Lin, Shiyu; Zhang, Tao; Li, Qianshun; Li, Xiaolong; Lin, Yunfeng

    2016-08-03

    Self-assembled tetrahedral DNA nanostructures (TDNs) with precise sizes have been extensively applied in various fields owing to their exceptional mechanical rigidity, structural stability, and modification versatility. In addition, TDNs can be internalized by mammalian cells and remain mainly intact within the cytoplasm by escaping degradation by nucleases. Here, we studied the effects of TDNs on cell migration and the underlying molecular mechanisms. TDNs remarkably enhanced the migration of rat adipose-derived stem cells and down-regulated the long noncoding RNA (lncRNA) XLOC 010623 to activate the mRNA expression of Tiam1 and Rac1. Furthermore, TDNs highly up-regulated the mRNA and protein expression of RHOA, ROCK2, and VCL. These results indicate that TDNs suppressed the transcription of lncRNA XLOC 010623 and activated the TIAM1/RAC1 and RHOA/ROCK2 signaling pathways to promote cell migration. On the basis of these findings, TDNs show a high potential for application in tissue repair and regenerative medicine as a functional three-dimensional DNA nanomaterial.

  3. Strategies for Innovation in Multicomponent Reaction Design

    OpenAIRE

    Ganem, Bruce

    2009-01-01

    By generating structural complexity in a single step from three or more reactants, multicomponent reactions (MCRs) make it possible to synthesize target compounds with greater efficiency and atom economy. The history of such reactions can be traced to the mid-nineteenth century when Strecker first produced α-aminonitriles from the condensation of aldehydes with ammonia and hydrogen cyanide.

  4. Multicomponent density functional theory embedding formulation.

    Science.gov (United States)

    Culpitt, Tanner; Brorsen, Kurt R; Pak, Michael V; Hammes-Schiffer, Sharon

    2016-07-28

    Multicomponent density functional theory (DFT) methods have been developed to treat two types of particles, such as electrons and nuclei, quantum mechanically at the same level. In the nuclear-electronic orbital (NEO) approach, all electrons and select nuclei, typically key protons, are treated quantum mechanically. For multicomponent DFT methods developed within the NEO framework, electron-proton correlation functionals based on explicitly correlated wavefunctions have been designed and used in conjunction with well-established electronic exchange-correlation functionals. Herein a general theory for multicomponent embedded DFT is developed to enable the accurate treatment of larger systems. In the general theory, the total electronic density is separated into two subsystem densities, denoted as regular and special, and different electron-proton correlation functionals are used for these two electronic densities. In the specific implementation, the special electron density is defined in terms of spatially localized Kohn-Sham electronic orbitals, and electron-proton correlation is included only for the special electron density. The electron-proton correlation functional depends on only the special electron density and the proton density, whereas the electronic exchange-correlation functional depends on the total electronic density. This scheme includes the essential electron-proton correlation, which is a relatively local effect, as well as the electronic exchange-correlation for the entire system. This multicomponent DFT-in-DFT embedding theory is applied to the HCN and FHF(-) molecules in conjunction with two different electron-proton correlation functionals and three different electronic exchange-correlation functionals. The results illustrate that this approach provides qualitatively accurate nuclear densities in a computationally tractable manner. The general theory is also easily extended to other types of partitioning schemes for multicomponent systems.

  5. Multicomponent density functional theory embedding formulation

    Science.gov (United States)

    Culpitt, Tanner; Brorsen, Kurt R.; Pak, Michael V.; Hammes-Schiffer, Sharon

    2016-07-01

    Multicomponent density functional theory (DFT) methods have been developed to treat two types of particles, such as electrons and nuclei, quantum mechanically at the same level. In the nuclear-electronic orbital (NEO) approach, all electrons and select nuclei, typically key protons, are treated quantum mechanically. For multicomponent DFT methods developed within the NEO framework, electron-proton correlation functionals based on explicitly correlated wavefunctions have been designed and used in conjunction with well-established electronic exchange-correlation functionals. Herein a general theory for multicomponent embedded DFT is developed to enable the accurate treatment of larger systems. In the general theory, the total electronic density is separated into two subsystem densities, denoted as regular and special, and different electron-proton correlation functionals are used for these two electronic densities. In the specific implementation, the special electron density is defined in terms of spatially localized Kohn-Sham electronic orbitals, and electron-proton correlation is included only for the special electron density. The electron-proton correlation functional depends on only the special electron density and the proton density, whereas the electronic exchange-correlation functional depends on the total electronic density. This scheme includes the essential electron-proton correlation, which is a relatively local effect, as well as the electronic exchange-correlation for the entire system. This multicomponent DFT-in-DFT embedding theory is applied to the HCN and FHF- molecules in conjunction with two different electron-proton correlation functionals and three different electronic exchange-correlation functionals. The results illustrate that this approach provides qualitatively accurate nuclear densities in a computationally tractable manner. The general theory is also easily extended to other types of partitioning schemes for multicomponent systems.

  6. Enhancing cognitive functioning in the elderly: multicomponent vs resistance training

    Directory of Open Access Journals (Sweden)

    Forte R

    2013-01-01

    Full Text Available Roberta Forte,1,2 Colin AG Boreham,1 Joao Costa Leite,3 Giuseppe De Vito,1 Lorraine Brennan,3 Eileen R Gibney,3 Caterina Pesce21Institute for Sport and Health, University College Dublin, Dublin, Ireland; 2Department of Human Movement and Sport Science, University of Rome "Foro Italico," Rome, Italy; 3Institute of Food and Health, University College Dublin, Dublin, IrelandPurpose: The primary purpose of this study was to compare the effects of two different exercise training programs on executive cognitive functions and functional mobility in older adults. A secondary purpose was to explore the potential mediators of training effects on executive function and functional mobility with particular reference to physical fitness gains.Methods: A sample of 42 healthy community dwelling adults aged 65 to 75 years participated twice weekly for 3 months in either: (1 multicomponent training, prioritizing neuromuscular coordination, balance, agility, and cognitive executive control; or (2 progressive resistance training for strength conditioning. Participants were tested at baseline (T1, following a 4-week control period (T2, and finally at postintervention (T3 for executive function (inhibition and cognitive flexibility and functional mobility (maximal walking speed with and without additional task requirements. Cardiorespiratory and muscular fitness were also assessed as potential mediators.Results: Indices of inhibition, the functions involved in the deliberate withholding of prepotent or automatic responses, and measures of functional mobility improved after the intervention, independent of training type. Mediation analysis suggested that different mechanisms underlie the effects of multicomponent and progressive resistance training. While multicomponent training seemed to directly affect inhibitory capacity, resistance training seemed to affect it indirectly through gains in muscular strength. Physical fitness and executive function variables did not

  7. Silver and gold-catalyzed multicomponent reactions

    Directory of Open Access Journals (Sweden)

    Giorgio Abbiati

    2014-02-01

    Full Text Available Silver and gold salts and complexes mainly act as soft and carbophilic Lewis acids even if their use as σ-activators has been rarely reported. Recently, transformations involving Au(I/Au(III-redox catalytic systems have been reported in the literature. In this review we highlight all these aspects of silver and gold-mediated processes and their application in multicomponent reactions.

  8. On Problems of Multicomponent System Maintenance Modelling

    Institute of Scientific and Technical Information of China (English)

    Tomasz Nowakowski; Sylwia Werbinka

    2009-01-01

    We present an overview of some recent developments in the area of mathematical modeling of maintenance decisions for multi-unit systems. The emphasis is on three main groups of multicomponent maintenance optimization models: the block replacement models, group maintenance models, and opportunistic maintenance models. Moreover, an example of a two-unit system maintenance process is provided in order to compare various maintenance policies.

  9. Multi-component optical solitary waves

    DEFF Research Database (Denmark)

    Kivshar, Y. S.; Sukhorukov, A. A.; Ostrovskaya, E. A.

    2000-01-01

    We discuss several novel types of multi-component (temporal and spatial) envelope solitary waves that appear in fiber and waveguide nonlinear optics. In particular, we describe multi-channel solitary waves in bit-parallel-wavelength fiber transmission systems for highperformance computer networks......, multi-color parametric spatial solitary waves due to cascaded nonlinearities of quadratic materials, and quasiperiodic envelope solitons due to quasi-phase-matching in Fibonacci optical superlattices. (C) 2000 Elsevier Science B.V. All rights reserved....

  10. Multicomponent Gas Diffusion in Porous Electrodes

    CERN Document Server

    Fu, Yeqing; Dutta, Abhijit; Mohanram, Aravind; Pietras, John D; Bazant, Martin Z

    2014-01-01

    Multicomponent gas transport is investigated with unprecedented precision by AC impedance analysis of porous YSZ anode-supported solid oxide fuel cells. A fuel gas mixture of H2-H2O-N2 is fed to the anode, and impedance data are measured across the range of hydrogen partial pressure (10-100%) for open circuit conditions at three temperatures (800C, 850C and 900C) and for 300mA applied current at 800C. For the first time, analytical formulae for the diffusion resistance (Rb) of three standard models of multicomponent gas transport (Fick, Stefan-Maxwell, and Dusty Gas) are derived and tested against the impedance data. The tortuosity is the only fitting parameter since all the diffusion coefficients are known. Only the Dusty Gas model leads to a remarkable data collapse for over twenty experimental conditions, using a constant tortuosity consistent with permeability measurements and the Bruggeman relation. These results establish the accuracy of the Dusty Gas model for multicomponent gas diffusion in porous med...

  11. Multicomponent diffusion in two-temperature magnetohydrodynamics

    Science.gov (United States)

    Ramshaw, J. D.; Chang, C. H.

    1996-06-01

    A recent hydrodynamic theory of multicomponent diffusion in multitemperature gas mixtures [J. D. Ramshaw, J. Non-Equilib. Thermodyn. 18, 121 (1993)] is generalized to include the velocity-dependent Lorentz force on charged species in a magnetic field B. This generalization is used to extend a previous treatment of ambipolar diffusion in two-temperature multicomponent plasmas [J. D. Ramshaw and C. H. Chang, Plasma Chem. Plasma Process. 13, 489 (1993)] to situations in which B and the electrical current density are nonzero. General expressions are thereby derived for the species diffusion fluxes, including thermal diffusion, in both single- and two-temperature multicomponent magnetohydrodynamics (MHD). It is shown that the usual zero-field form of the Stefan-Maxwell equations can be preserved in the presence of B by introducing generalized binary diffusion tensors dependent on B. A self-consistent effective binary diffusion approximation is presented that provides explicit approximate expressions for the diffusion fluxes. Simplifications due to the small electron mass are exploited to obtain an ideal MHD description in which the electron diffusion coefficients drop out, resistive effects vanish, and the electric field reduces to a particularly simple form. This description should be well suited for numerical calculations.

  12. Inkjet printing assisted synthesis of multicomponent mesoporous metal oxides for ultrafast catalyst exploration.

    Science.gov (United States)

    Liu, Xiaonao; Shen, Yi; Yang, Ruoting; Zou, Shihui; Ji, Xiulei; Shi, Lei; Zhang, Yichi; Liu, Deyu; Xiao, Liping; Zheng, Xiaoming; Li, Song; Fan, Jie; Stucky, Galen D

    2012-11-14

    We describe an inkjet printing assisted cooperative-assembly method for high-throughput generation of catalyst libraries (multicomponent mesoporous metal oxides) at a rate of 1,000,000-formulations/hour with up to eight-component compositions. The compositions and mesostructures of the libraries can be well-controlled and continuously varied. Fast identification of an inexpensive and efficient quaternary catalyst for photocatalytic hydrogen evolution is achieved via a multidimensional group testing strategy to reduce the number of performance validation experiments (25,000-fold reduction over an exhaustive one-by-one search).

  13. Spatially confined assembly of nanoparticles.

    Science.gov (United States)

    Jiang, Lin; Chen, Xiaodong; Lu, Nan; Chi, Lifeng

    2014-10-21

    The ability to assemble NPs into ordered structures that are expected to yield collective physical or chemical properties has afforded new and exciting opportunities in the field of nanotechnology. Among the various configurations of nanoparticle assemblies, two-dimensional (2D) NP patterns and one-dimensional (1D) NP arrays on surfaces are regarded as the ideal assembly configurations for many technological devices, for example, solar cells, magnetic memory, switching devices, and sensing devices, due to their unique transport phenomena and the cooperative properties of NPs in assemblies. To realize the potential applications of NP assemblies, especially in nanodevice-related applications, certain key issues must still be resolved, for example, ordering and alignment, manipulating and positioning in nanodevices, and multicomponent or hierarchical structures of NP assemblies for device integration. Additionally, the assembly of NPs with high precision and high levels of integration and uniformity for devices with scaled-down dimensions has become a key and challenging issue. Two-dimensional NP patterns and 1D NP arrays are obtained using traditional lithography techniques (top-down strategies) or interfacial assembly techniques (bottom-up strategies). However, a formidable challenge that persists is the controllable assembly of NPs in desired locations over large areas with high precision and high levels of integration. The difficulty of this assembly is due to the low efficiency of small features over large areas in lithography techniques or the inevitable structural defects that occur during the assembly process. The combination of self-assembly strategies with existing nanofabrication techniques could potentially provide effective and distinctive solutions for fabricating NPs with precise position control and high resolution. Furthermore, the synergistic combination of spatially mediated interactions between nanoparticles and prestructures on surfaces may play

  14. A Course in Transport Phenomena in Multicomponent, Multiphase, Reacting Systems.

    Science.gov (United States)

    Carbonell, R. G.; Whitaker, S.

    1978-01-01

    This course concentrates on a rigorous development of the multicomponent transport equations, boundary conditions at phase interfaces, and volume-averaged transport equations for multiphase reacting systems. (BB)

  15. The multi-component Tu hierarchy of soliton equations and its multi-component integrable couplings system

    Institute of Scientific and Technical Information of China (English)

    Xia Tie-Cheng; Wang Hong; Zhang Yu-Feng

    2005-01-01

    A new simple loop algebra GM is constructed, which is devoted to the establishing of an isospectral problem. By making use of the Tu scheme, the multi-component Tu hierarchy is obtained. Furthermore, an expanding loop algebra FM of the loop algebra GM is presented. Based on the FM, the multi-component integrable coupling system of the multi-component Tu hierarchy has been worked out. The method can be applied to other nonlinear evolution equation hierarchies.

  16. Adsorption Rate Models for Multicomponent Adsorption Systems

    Institute of Scientific and Technical Information of China (English)

    姚春才

    2004-01-01

    Three adsorption rate models are derived for multicomponent adsorption systems under either pore diffusion or surface diffusion control. The linear driving force (LDF) model is obtained by assuming a parabolic intraparticle concentration profile. Models I and Ⅱ are obtained from the parabolic concentration layer approximation. Examples are presented to demonstrate the usage and accuracy of these models. It is shown that Model I is suitable for batch adsorption calculations and Model Ⅱ provides a good approximation in fixed-bed adsorption processes while the LDF model should not be used in batch adsorption and may be considered acceptable in fixed-bed adsorption where the parameter Ti is relatively large.

  17. Multicomponent glass fiber optic integrated structures

    Science.gov (United States)

    Pysz, Dariusz; Kujawa, Ireneusz; Szarniak, Przemyslaw; Franczyk, Marcin; Stepien, Ryszard; Buczynski, Ryszard

    2005-09-01

    A range of integrated fiber optic structures - lightguides, image guides, multicapillary arrays, microstructured (photonic) fibers - manufactured in the Institute of Electronic Materials Technology (ITME) is described. All these structures are made of multicomponent glasses (a part of them melted in ITME). They can be manufactured in similar multistep process that involves drawing glass or lightguide rods and tubes preparing glass performs, stacking a bundle with rods and (or) tubes, drawing multifiber or multicapillary performs. Structure formation, technological process, characterization and applications of different integrated structures are presented.

  18. AD JOINT SYMMETRY CONSTRAINTS OF MULTICOMPONENT AKNS EQUATIONS

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    A soliton hierarchy of multicomponent AKNS equations is generated from an arbitrary order matrix spectral problem,along with its bi-Hamiltonian formulation.Adjoint symmetry constraints are presented to manipulate binary nonlinearization for the associated arbitrary order matrix spectral problem.The resulting spatial and temporal constrained flows are shown to provide integrable decompositions of the multicomponent AKNS equations.

  19. Multicomponent and multiscale systems theory, methods, and applications in engineering

    CERN Document Server

    Geiser, Juergen

    2016-01-01

    This book examines the latest research results from combined multi-component and multi-scale explorations. It provides theory, considers underlying numerical methods, and presents brilliant computational experimentation. Engineering computations featured in this monograph further offer particular interest to many researchers, engineers, and computational scientists working in frontier modeling and applications of multicomponent and multiscale problems. Professor Geiser gives specific attention to the aspects of decomposing and splitting delicate structures and controlling decomposition and the rationale behind many important applications of multi-component and multi-scale analysis. Multicomponent and Multiscale Systems: Theory, Methods, and Applications in Engineering also considers the question of why iterative methods can be powerful and more appropriate for well-balanced multiscale and multicomponent coupled nonlinear problems. The book is ideal for engineers and scientists working in theoretical and a...

  20. Small-peptide-based organogel kit: towards the development of multicomponent self-sorting organogels.

    Science.gov (United States)

    Afrasiabi, Rouzbeh; Kraatz, Heinz-Bernhard

    2013-11-18

    The results presented here highlight the extremely useful nature of ultra-short peptides as building blocks in the development of smart multicomponent supramolecular devices. A facile bottom-up strategy for the synthesis of a small library of stimuli-responsive smart organogelators has been proposed based on the predictive self-assembly of ultra-short peptides. More importantly, the narcissistic self-sorting of the gelators has been evaluated as a simple method for the efficient co-assembly of a donor-acceptor dual-component gel, allowing the investigation of possible future applications of similar systems in the development of a supramolecular photo-conversion device. Interestingly, it was observed that the self-organization of the components can lead to highly ordered systems in which discrimination between compatible and non-compatible building blocks directs the effective organization of the chromophores and gives rise to the formation of an excited-state complex with exciplex-like emission. The current report may prove important in the development of organogel-based multicomponent smart devices.

  1. Planar ceramic membrane assembly and oxidation reactor system

    Science.gov (United States)

    Carolan, Michael Francis; Dyer, legal representative, Kathryn Beverly; Wilson, Merrill Anderson; Ohm, Ted R.; Kneidel, Kurt E.; Peterson, David; Chen, Christopher M.; Rackers, Keith Gerard; Dyer, deceased, Paul Nigel

    2007-10-09

    Planar ceramic membrane assembly comprising a dense layer of mixed-conducting multi-component metal oxide material, wherein the dense layer has a first side and a second side, a porous layer of mixed-conducting multi-component metal oxide material in contact with the first side of the dense layer, and a ceramic channeled support layer in contact with the second side of the dense layer. The planar ceramic membrane assembly can be used in a ceramic wafer assembly comprising a planar ceramic channeled support layer having a first side and a second side; a first dense layer of mixed-conducting multi-component metal oxide material having an inner side and an outer side, wherein the inner side is in contact with the first side of the ceramic channeled support layer; a first outer support layer comprising porous mixed-conducting multi-component metal oxide material and having an inner side and an outer side, wherein the inner side is in contact with the outer side of the first dense layer; a second dense layer of mixed-conducting multi-component metal oxide material having an inner side and an outer side, wherein the inner side is in contact with the second side of the ceramic channeled layer; and a second outer support layer comprising porous mixed-conducting multi-component metal oxide material and having an inner side and an outer side, wherein the inner side is in contact with the outer side of the second dense layer.

  2. Calculation of sulfide capacities of multicomponent slags

    Science.gov (United States)

    Pelton, Arthur D.; Eriksson, Gunnar; Romero-Serrano, Antonio

    1993-10-01

    The Reddy-Blander model for the sulfide capacities of slags has been modified for the case of acid slags and to include A12O3 and TiO2 as components. The model has been extended to calculate a priori sulfide capacities of multicomponent slags, from a knowledge of the thermodynamic activities of the component oxides, with no adjustable parameters. Agreement with measurements is obtained within experimental uncertainty for binary, ternary, and quinary slags involving the components SiO2-Al2O3-TiO2-CaO-MgO-FeO-MnO over wide ranges of composition. The oxide activities used in the computations are calculated from a database of model parameters obtained by optimizing thermodynamic and phase equilibrium data for oxide systems. Sulfur has now been included in this database. A computing system with automatic access to this and other databases has been developed to permit the calculation of the sulfur content of slags in multicomponent slag/metal/gas/solid equilibria.

  3. Theory of margination in confined multicomponent suspensions

    Science.gov (United States)

    Henriquez Rivera, Rafael; Sinha, Kushal; Graham, Michael

    2015-11-01

    In blood flow, leukocytes and platelets tend to segregate near the vessel walls; this is known as margination. Margination of leukocytes and platelets is important in physiological processes, medical diagnostics and drug delivery. A mechanistic theory is developed to describe flow-induced segregation in confined multicomponent suspensions of deformable particles such as blood. The theory captures the essential features of margination by describing it in terms of two key competing processes in these systems at low Reynolds number: wall-induced migration and hydrodynamic pair collisions. The theory also includes the effect of physical properties of the deformable particles and molecular diffusion. Several regimes of segregation are identified, depending on the value of a ``margination parameter'' M. Moreover, there is a critical value of M below which a sharp ``drainage transition'' occurs: one component is completely depleted from the bulk flow to the vicinity of the walls. Direct hydrodynamic simulations also display this transition in suspensions where the components differ in size or flexibility. The developed mechanistic theory leads to substantial insight into the origins of margination and will help in guiding development of new technologies involving multicomponent suspensions. This work was supported by NSF grant CBET-1436082.

  4. Mechanics of Turbulence of Multicomponent Gases

    Science.gov (United States)

    Marov, Mikhail Ya.; Kolesnichenko, Aleksander V.

    2002-02-01

    Turbulence in multicomponent reacting gas mixtures is an important mechanism underlying numerous natural phenomena closely related to the study of our space environment. This book develops a new mathematical approach for modelling multicomponent gas turbulence that adequately describes the combined processes of dynamics and heat and mass transfer when chemical kinetics and turbulent mixing are equally important. The developed models include the evolutionary transfer equations for the single-point second correlation moments of turbulent fluctuations of thermohydrodynamical parameters. The phenomenological approach to the closure problem in hydrodynamic equations of mean motion at the level of the first order moments is based on the thermodynamics of irreversible processes and enables defining relationships in a more general form as compared to those conventionally deduced using the mixing path concept. Based on the developed approach, turbulent exchange factors for a planetary upper atmosphere are evaluated, and a turbulent model of a protoplanetary accretion gas-dust disk involving heat and mass transfer and coagulation is also considered. As compared to previously published books on the problem of turbulence, this book deals, for the first time, with the complicated models of reacting gas mixtures. It is intended for graduate and postgraduate students in the fields of fluid gas dynamics, astrophysics, space physics, planetary sciences, and aeronomy, and especially for those dealing with computer modelling of the processes in such natural media. The book may also be of interest to specialists in the relevant fields of ecology, engineering, and material processing.

  5. Multicomponent Dark Matter from Gauge Symmetry

    CERN Document Server

    Arcadi, Giorgio; Lebedev, Oleg; Mambrini, Yann; Pokorski, Stefan; Toma, Takashi

    2016-01-01

    The composition of Dark Matter (DM) remains an important open question. The current data do not distinguish between single- and multi-component DM, while in theory constructions it is often assumed that DM is composed of a single field. In this work, we study a hidden sector which naturally entails multicomponent DM consisting of spin-1 and spin-0 states. This UV complete set-up is based on SU(3) hidden gauge symmetry with the minimal scalar field content to break it spontaneously. The presence of multiple DM components is a result of a residual Z_2 x Z'_2 symmetry which is inherent in the Yang-Mills systems. We find that the model exhibits various parametric regimes with drastically different DM detection prospects. In particular, we find that the direct detection cross section is much suppressed in large regions of parameter space as long as the Standard Model Higgs mixes predominantly with a single scalar from the hidden sector. The resulting scattering rate is often beyond the level of sensitivity of XENO...

  6. Theory and Simulation of Multicomponent Osmotic Systems.

    Science.gov (United States)

    Karunaweera, Sadish; Gee, Moon Bae; Weerasinghe, Samantha; Smith, Paul E

    2012-05-28

    Most cellular processes occur in systems containing a variety of components many of which are open to material exchange. However, computer simulations of biological systems are almost exclusively performed in systems closed to material exchange. In principle, the behavior of biomolecules in open and closed systems will be different. Here, we provide a rigorous framework for the analysis of experimental and simulation data concerning open and closed multicomponent systems using the Kirkwood-Buff (KB) theory of solutions. The results are illustrated using computer simulations for various concentrations of the solutes Gly, Gly(2) and Gly(3) in both open and closed systems, and in the absence or presence of NaCl as a cosolvent. In addition, KB theory is used to help rationalize the aggregation properties of the solutes. Here one observes that the picture of solute association described by the KB integrals, which are directly related to the solution thermodynamics, and that provided by more physical clustering approaches are different. It is argued that the combination of KB theory and simulation data provides a simple and powerful tool for the analysis of complex multicomponent open and closed systems.

  7. The puzzle of the Krebs citric acid cycle: assembling the pieces of chemically feasible reactions, and opportunism in the design of metabolic pathways during evolution.

    Science.gov (United States)

    Meléndez-Hevia, E; Waddell, T G; Cascante, M

    1996-09-01

    The evolutionary origin of the Krebs citric acid cycle has been for a long time a model case in the understanding of the origin and evolution of metabolic pathways: How can the emergence of such a complex pathway be explained? A number of speculative studies have been carried out that have reached the conclusion that the Krebs cycle evolved from pathways for amino acid biosynthesis, but many important questions remain open: Why and how did the full pathway emerge from there? Are other alternative routes for the same purpose possible? Are they better or worse? Have they had any opportunity to be developed in cellular metabolism evolution? We have analyzed the Krebs cycle as a problem of chemical design to oxidize acetate yielding reduction equivalents to the respiratory chain to make ATP. Our analysis demonstrates that although there are several different chemical solutions to this problem, the design of this metabolic pathway as it occurs in living cells is the best chemical solution: It has the least possible number of steps and it also has the greatest ATP yielding. Study of the evolutionary possibilities of each one-taking the available material to build new pathways-demonstrates that the emergence of the Krebs cycle has been a typical case of opportunism in molecular evolution. Our analysis proves, therefore, that the role of opportunism in evolution has converted a problem of several possible chemical solutions into a single-solution problem, with the actual Krebs cycle demonstrated to be the best possible chemical design. Our results also allow us to derive the rules under which metabolic pathways emerged during the origin of life.

  8. The PprA-PprB two-component system activates CupE, the first non-archetypal Pseudomonas aeruginosa chaperione-usher pathway system assembling fimbriae

    DEFF Research Database (Denmark)

    Giraud, Caroline; Bernard, Christophe S.; Calderon, Virginie

    2011-01-01

    two-component system (TCS) as a regulator of cupE expression, and further demonstrated the involvement of the PprAB TCS in direct CupE fimbrial assembly activation. Thus, this TCS represents a new regulatory element controlling the transition between planktonic and community lifestyles in P......The opportunistic pathogen Pseudomonas aeruginosa has redundant molecular systems that contribute to its pathogenicity. Those assembling fimbrial structures promote complex organized community lifestyle. We characterized a new 5.8 kb genetic locus, cupE, that includes the conserved usher...... at least CupE1 protein, at the bacterial cell surface. These fimbriae not only played a significant role in the early stages (microcolony and macrocolony formation) but also in shaping 3D mushrooms during P. aeruginosa biofilm development. Using wide-genome transposon mutagenesis, we identified the PprAB...

  9. The PprA-PprB two-component system activates CupE, the first non-archetypal Pseudomonas aeruginosa chaperone-usher pathway system assembling fimbriae.

    Science.gov (United States)

    Giraud, Caroline; Bernard, Christophe S; Calderon, Virginie; Yang, Liang; Filloux, Alain; Molin, Søren; Fichant, Gwennaele; Bordi, Christophe; de Bentzmann, Sophie

    2011-03-01

    The opportunistic pathogen Pseudomonas aeruginosa has redundant molecular systems that contribute to its pathogenicity. Those assembling fimbrial structures promote complex organized community lifestyle. We characterized a new 5.8 kb genetic locus, cupE, that includes the conserved usher- and chaperone-encoding genes. This locus, widely conserved in different bacterial species, contains four additional genes encoding non-archetypal fimbrial subunits. We first evidenced that the cupE gene cluster was specifically expressed in biofilm conditions and was responsible for fibre assembly containing at least CupE1 protein, at the bacterial cell surface. These fimbriae not only played a significant role in the early stages (microcolony and macrocolony formation) but also in shaping 3D mushrooms during P. aeruginosa biofilm development. Using wide-genome transposon mutagenesis, we identified the PprAB two-component system (TCS) as a regulator of cupE expression, and further demonstrated the involvement of the PprAB TCS in direct CupE fimbrial assembly activation. Thus, this TCS represents a new regulatory element controlling the transition between planktonic and community lifestyles in P. aeruginosa.

  10. A crotonyl-CoA reductase-carboxylase independent pathway for assembly of unusual alkylmalonyl-CoA polyketide synthase extender units

    Science.gov (United States)

    Ray, Lauren; Valentic, Timothy R.; Miyazawa, Takeshi; Withall, David M.; Song, Lijiang; Milligan, Jacob C.; Osada, Hiroyuki; Takahashi, Shunji; Tsai, Shiou-Chuan; Challis, Gregory L.

    2016-12-01

    Type I modular polyketide synthases assemble diverse bioactive natural products. Such multienzymes typically use malonyl and methylmalonyl-CoA building blocks for polyketide chain assembly. However, in several cases more exotic alkylmalonyl-CoA extender units are also known to be incorporated. In all examples studied to date, such unusual extender units are biosynthesized via reductive carboxylation of α, β-unsaturated thioesters catalysed by crotonyl-CoA reductase/carboxylase (CCRC) homologues. Here we show using a chemically-synthesized deuterium-labelled mechanistic probe, and heterologous gene expression experiments that the unusual alkylmalonyl-CoA extender units incorporated into the stambomycin family of polyketide antibiotics are assembled by direct carboxylation of medium chain acyl-CoA thioesters. X-ray crystal structures of the unusual β-subunit of the acyl-CoA carboxylase (YCC) responsible for this reaction, alone and in complex with hexanoyl-CoA, reveal the molecular basis for substrate recognition, inspiring the development of methodology for polyketide bio-orthogonal tagging via incorporation of 6-azidohexanoic acid and 8-nonynoic acid into novel stambomycin analogues.

  11. Self-similar behavior for multicomponent coagulation

    Institute of Scientific and Technical Information of China (English)

    杨曼丽; 卢志明; 刘宇陆

    2014-01-01

    Self-similar behavior for the multicomponent coagulation system is investi-gated analytically in this paper. Asymptotic self-similar solutions for the constant ker-nel, sum kernel, and product kernel are achieved by introduction of different generating functions. In these solutions, two size-scale variables are introduced to characterize the asymptotic distribution of total mass and individual masses. The result of product kernel (gelling kernel) is consistent with the Vigli-Ziff conjecture to some extent. Furthermore, the steady-state solution with injection for the constant kernel is obtained, which is again the product of a normal distribution and the scaling solution for the single variable coag-ulation.

  12. Chemical-potential route for multicomponent fluids

    Science.gov (United States)

    Santos, Andrés; Rohrmann, René D.

    2013-05-01

    The chemical potentials of multicomponent fluids are derived in terms of the pair correlation functions for arbitrary number of components, interaction potentials, and dimensionality. The formally exact result is particularized to hard-sphere mixtures with zero or positive nonadditivity. As a simple application, the chemical potentials of three-dimensional additive hard-sphere mixtures are derived from the Percus-Yevick theory and the associated equation of state is obtained. This Percus-Yevick chemical-route equation of state is shown to be more accurate than the virial equation of state. An interpolation between the chemical-potential and compressibility routes exhibits a better performance than the well-known Boublík-Mansoori-Carnahan-Starling-Leland equation of state.

  13. Determination of Stability from Multicomponent Pesticide Mixes.

    Science.gov (United States)

    Dorweiler, Kelly J; Gurav, Jagdish N; Walbridge, James S; Ghatge, Vishwas S; Savant, Rahul H

    2016-08-10

    A study was conducted to evaluate the stability of 528 pesticides, metabolites, and contaminants prepared in large multicomponent mixes to enhance laboratory efficiency by allowing maximum use of the useful shelf life of the mixtures. Accelerated aging at 50 °C simulated 6 month, 1 year, and 2 year storage periods at -20 °C. Initial mixture composition was based on the instrument of analysis. After preliminary stability data had been obtained, mixtures were reformulated and re-evaluated. In all, 344 compounds showed satisfactory stability across all treatment groups, 100 compounds showed statistically significant changes between the control and the 6 month simulated storage period (27 with losses >20%), and the remainder showed borderline stability or were tested in one protocol. Stability behavior for organophosphates agreed with the proposed reaction mechanism responsible for acetylcholinesterase inhibition. A small number of compounds increased in response over time, suggesting the occurrence of degradation of precursor pesticides into these respective compounds.

  14. Tailoring two-dimensional PTCDA-melamine self-assembled architectures at room temperature by tuning molecular ratio

    NARCIS (Netherlands)

    Sun, Xiaonan; Jonkman, Harry T.; Silly, Fabien

    2010-01-01

    Engineering and tuning multi-component supramolecular self-assemblies on surfaces is one of the challenges of nanotechnology. We use scanning tunneling microscopy to investigate the influence of molecular ratio on the self-assembly of PTCDA-melamine structures on Au(111)-(22 x root 3). Our observati

  15. Electrospinning of multicomponent ultrathin fibrous nonwovens for semi-occlusive wound dressings.

    Science.gov (United States)

    Hong, Youliang; Li, Yanan; Zhuang, Xiuli; Chen, Xuesi; Jing, Xiabin

    2009-05-01

    This work describes the design and assembly of multifunctional and cost-efficient composite fiber nonwovens as semi-occlusive wound dressings using a simple electrospinning process to incorporate a variety of functional components into an ultrathin fiber. These components include non-hydrophilic poly(L-lactide) (PLLA) as fibrous backbone, hydrophilic poly(vinyl pyrrolidone)-iodine (PVP-I), TiO(2) nanoparticles, zinc chloride as antimicrobial, odor-controlling, and antiphlogistic agents, respectively. The process of synthesis starts with a multicomponent solution of PLLA, PVP, TiO(2) nanoparticles plus zinc chloride, in which TiO(2) nanoparticles are synthesized by in situ hydrolysis of TiO(2) precursors in a PVP solution for the sake of obtaining the particle-uniformly dispersive solution. Subsequent electrospinning generates the corresponding composite fibers. A further iodine vapor treatment to the composite fibers combines iodine with PVP to produce the PVP-I complexes. Experiments indicate that the assembled composite fibers (300-400 nm) possess the ointment-releasing characteristic and the phase-separate, core-sheath structures in which PVP-I residing in fiber surface layer becomes the sheath, and PLLA distributing inside the fiber acts as the core. Based on this design, the structural advantages combining active components endow the assembled composite nonwovens with a variety of functions, especially, the existence of PVP-I, endows the nonwoven with water absorbability, antimicrobial activity, adhesive ability, and transformable characteristic from hydrophilicity to non-hydrophilicity. The multifunctional, cost-efficient, and ointment-releasing characteristics make the multicomponent composite fibrous nonwovens potentially useful in applications such as initial stage of dressing of the cankerous or contaminated wounds.

  16. Multicomponent asymmetric reactions mediated by proline lithium salt

    DEFF Research Database (Denmark)

    Renzi, Polyssena; Overgaard, Jacob; Bella, Marco

    2010-01-01

    The multicomponent reaction between proline lithium salt, 2-cyclohexen-1-one and aliphatic aldehydes affords the 4- alkylidene-2-cyclohexen-1-ones, which are interesting fragrances, and bicyclic amino acids that bear four additional stereocenters, obtained as single stereoisomer....

  17. Multicomponent reactions: A simple and efficient route to heterocyclic phosphonates

    Science.gov (United States)

    2016-01-01

    Summary Multicomponent reactions (MCRs) are one of the most important processes for the preparation of highly functionalized organic compounds in modern synthetic chemistry. As shown in this review, they play an important role in organophosphorus chemistry where phosphorus reagents are used as substrates for the synthesis of a wide range of phosphorylated heterocycles. In this article, an overview about multicomponent reactions used for the synthesis of heterocyclic compounds bearing a phosphonate group on the ring is given. PMID:27559377

  18. Modulated decay in the multi-component Universe

    Energy Technology Data Exchange (ETDEWEB)

    Enomoto, Seishi [Department of Physics, Nagoya University, Nagoya 464-8602 (Japan); Kohri, Kazunori [Cosmophysics group, Theory Center, IPNS, KEK, and The Graduate University for Advanced Study (Sokendai), Tsukuba 305-0801 (Japan); Matsuda, Tomohiro, E-mail: enomoto@th.phys.nagoya-u.ac.jp, E-mail: kohri@post.kek.jp, E-mail: matsuda@sit.ac.jp [Laboratory of Physics, Saitama Institute of Technology, Fukaya, Saitama 369-0293 (Japan)

    2013-08-01

    The early Universe after inflation may have oscillations, kinations (nonoscillatory evolution of a field), topological defects, relativistic and non-relativistic particles at the same time. The Universe whose energy density is a sum of those components can be called the multi-component Universe. The components, which may have distinguishable density scalings, may decay modulated. In this paper we study generation of the curvature perturbations caused by the modulated decay in the multi-component Universe.

  19. A Robust MEMS Based Multi-Component Sensor for 3D Borehole Seismic Arrays

    Energy Technology Data Exchange (ETDEWEB)

    Paulsson Geophysical Services

    2008-03-31

    The objective of this project was to develop, prototype and test a robust multi-component sensor that combines both Fiber Optic and MEMS technology for use in a borehole seismic array. The use such FOMEMS based sensors allows a dramatic increase in the number of sensors that can be deployed simultaneously in a borehole seismic array. Therefore, denser sampling of the seismic wave field can be afforded, which in turn allows us to efficiently and adequately sample P-wave as well as S-wave for high-resolution imaging purposes. Design, packaging and integration of the multi-component sensors and deployment system will target maximum operating temperature of 350-400 F and a maximum pressure of 15000-25000 psi, thus allowing operation under conditions encountered in deep gas reservoirs. This project aimed at using existing pieces of deployment technology as well as MEMS and fiber-optic technology. A sensor design and analysis study has been carried out and a laboratory prototype of an interrogator for a robust borehole seismic array system has been assembled and validated.

  20. G protein-coupled receptors engage the mammalian Hippo pathway through F-actin: F-Actin, assembled in response to Galpha12/13 induced RhoA-GTP, promotes dephosphorylation and activation of the YAP oncogene.

    Science.gov (United States)

    Regué, Laura; Mou, Fan; Avruch, Joseph

    2013-05-01

    The Hippo pathway, a cascade of protein kinases that inhibits the oncogenic transcriptional coactivators YAP and TAZ, was discovered in Drosophila as a major determinant of organ size in development. Known modes of regulation involve surface proteins that mediate cell-cell contact or determine epithelial cell polarity which, in a tissue-specific manner, use intracellular complexes containing FERM domain and actin-binding proteins to modulate the kinase activities or directly sequester YAP. Unexpectedly, recent work demonstrates that GPCRs, especially those signaling through Galpha12/13 such as the protease activated receptor PAR1, cause potent YAP dephosphorylation and activation. This response requires active RhoA GTPase and increased assembly of filamentous (F-)actin. Morever, cell architectures that promote F-actin assembly per se also activate YAP by kinase-dependent and independent mechanisms. These findings unveil the ability of GPCRs to activate the YAP oncogene through a newly recognized signaling function of the actin cytoskeleton, likely to be especially important for normal and cancerous stem cells.

  1. The sphingolipid long-chain base-Pkh1/2-Ypk1/2 signaling pathway regulates eisosome assembly and turnover.

    Science.gov (United States)

    Luo, Guangzuo; Gruhler, Albrecht; Liu, Ying; Jensen, Ole N; Dickson, Robert C

    2008-04-18

    Eisosomes are recently described fungal structures that play roles in the organization of the plasma membrane and endocytosis. Their major protein components are Pil1 and Lsp1, and previous studies showed that these proteins are phosphorylated by the sphingolipid long-chain base-activated Pkh1 and Pkh2 protein kinases in vitro. We show that Pkh1 and Pkh2 phosphorylate Pil1 and Lsp1 in vivo to produce species B, and that heat stress, which activates Pkh1 and Pkh2, generates a more highly phosphorylated species, C. Cells with low Pkh activity lack species B and C and contain abnormally organized eisosomes. To verify that Pil1 phosphorylation is essential for correct eisosome organization, phosphorylated serine and threonine residues were identified and changed to alanines. A variant Pil1 protein lacking five phosphorylation sites did not form eisosomes during log phase growth, indicating that phosphorylation is critical for eisosome organization. We also found that eisosomes are dynamic structures and disassemble when the Ypk protein kinases, which are activated by the sphingolipid-Pkh signaling pathway, are inactivated or when the sphingolipid signal is pharmacologically blocked with myriocin. We conclude that eisosome formation and turnover are regulated by the sphingolipid-Pkh1/2-Ypk1/2 signaling pathway. These data and previous data showing that endocytosis is regulated by the sphingolipid-Pkh1/2-Ypk1/2 signaling pathway suggest that Pkh1 and -2 respond to changes in membrane sphingolipids and transmit this information to eisosomes via Pil1 phosphorylation. Eisosomes then control endocytosis to align the composition and function of the plasma membrane to match demand.

  2. Single Pass Multi-component Harvester

    Energy Technology Data Exchange (ETDEWEB)

    Reed Hoskinson; J. Richard Hess

    2004-08-01

    Abstract. In order to meet the U. S. government’s goal of supplementing the energy available from petroleum by increasing the production of energy from renewable resources, increased production of bioenergy has become one of the new goals of the United States government and our society. U.S. Executive Orders and new Federal Legislation have mandated changes in government procedures and caused reorganizations within the government to support these goals. The Biomass Research and Development Initiative is a multi-agency effort to coordinate and accelerate all U.S. Federal biobased products and bioenergy research and development. The Initiative is managed by the National Biomass Coordination Office, which is staffed by both the DOE and the USDA. One of the most readily available sources of biomass from which to produce bioenergy is an agricultural crop residue, of which straw from small grains is the most feasible residue with which to start. For the straw residue to be used its collection must be energy efficient and its removal must not impact the sustainability of the growing environment. In addition, its collection must be economically advantageous to the producer. To do all that, a single pass multi-component harvester system is most desirable. Results from our first prototype suggest that current combines probably do adequate threshing and that a separate chassis can be developed that does additional separation and that is economically feasible.

  3. From generic pathways to ICT-supported horizontally integrated care: the SmartCare approach and convergence with future Internet assembly.

    Science.gov (United States)

    Urošević, Vladimir; Mitić, Marko

    2014-01-01

    Successful service integration in policy and practice requires both technology innovation and service process innovation being pursued and implemented at the same time. The SmartCare project (partially EC-funded under CIP ICT PSP Program) aims to achieve this through development, piloting and evaluation of ICT-based services, horizontally integrating health and social care in ten pilot regions, including Kraljevo region in Serbia. The project has identified and adopted two generic highest-level common thematic pathways in joint consolidation phase - integrated support for long-term care and integrated support after hospital discharge. A common set of standard functional specifications for an open ICT platform enabling the delivery of integrated care is being defined, around the challenges of data sharing, coordination and communication in these two formalized pathways. Implementation and system integration on technology and architecture level are to be based on open standards, multivendor interoperability, and leveraging on the current evolving open specification technology foundations developed in relevant projects across the European Research Area.

  4. Analysis of the Durability of PEM FC Membrane Electrode Assemblies in Automotive Applications through the Fundamental Understanding of Membrane and MEA Degradation Pathways

    Energy Technology Data Exchange (ETDEWEB)

    Perry, Randal L. [DuPont

    2013-10-31

    The Project focused on mitigation of degradation processes on membrane electrode assemblies. The approach was to develop a model to improve understanding of the mechanisms, and to use it to focus mitigation strategies. The detailed effects of various accelerated stress tests (ASTs) were evaluated to determine the best subset to use in model development. A combination of ASTs developed by the Fuel Cell Commercialization Conference of Japan and the Fuel Cell Tech Team were selected for use. The ASTs were compared by measuring effects on performance, running in-situ diagnostics, and performing microscopic analyses of the membrane electrode assemblies after the stress tests were complete. Nissan ran FCCJ AST protocols and performed in situ and ex-situ electrochemical testing. DuPont ran FCTT and USFCC AST protocols, performed scanning and transmission electron microscopy and ran in-situ electrochemical tests. Other ex-situ testing was performed by IIT, along with much of the data analysis and model development. These tests were then modified to generate time-dependent data of the degradation mechanisms. Three different catalyst types and four membrane variants were then used to generate data for a theoretically-based degradation model. An important part of the approach was to use commercially available materials in the electrodes and membranes made in scalable semiworks processes rather than lab-based materials. This constraint ensured all materials would be practicable for full-scale testing. The initial model for the electrode layer was tested for internal consistency and agreement with the data. A Java-based computer application was developed to analyze the time-dependent AST data using polarization curves with four different cathode gas feeds and generate model parameters. Data showed very good reproducibility and good consistency as cathode catalyst loadings were varied. At the point of termination of the project, a basic electrode model was in hand with several

  5. Multicomponent synthetic polymers with viral-mimetic chemistry for nucleic acid delivery.

    Science.gov (United States)

    Soliman, Mahmoud; Nasanit, Rujikan; Abulateefeh, Samer R; Allen, Stephanie; Davies, Martyn C; Briggs, Simon S; Seymour, Leonard W; Preece, Jon A; Grabowska, Anna M; Watson, Susan A; Alexander, Cameron

    2012-01-01

    The ability to deliver genetic material for therapy remains an unsolved challenge in medicine. Natural gene carriers, such as viruses, have evolved sophisticated mechanisms and modular biopolymer architectures to overcome these hurdles. Here we describe synthetic multicomponent materials for gene delivery, designed with features that mimic virus modular components and which transfect specific cell lines with high efficacy. The hierarchical nature of the synthetic carriers allows the incorporation of membrane-disrupting peptides, nucleic acid binding components, a protective coat layer, and an outer targeting ligand all in a single nanoparticle, but with functionality such that each is utilized in a specific sequence during the gene delivery process. The experimentally facile assembly suggests these materials could form a generic class of carrier systems that could be customized for many different therapeutic settings.

  6. Amine-phenyl multi-component gradient stationary phases.

    Science.gov (United States)

    Dewoolkar, Veeren C; Kannan, Balamurali; Ashraf, Kayesh M; Higgins, Daniel A; Collinson, Maryanne M

    2015-09-04

    Continuous multi-component gradients in amine and phenyl groups were fabricated using controlled rate infusion (CRI). Solutions prepared from either 3-aminopropyltriethoxysilane (APTEOS) or phenyltrimethoxysilane (PTMOS) were infused, in a sequential fashion, at a controlled rate into an empty graduated cylinder housing a vertically aligned thin layer chromatography (TLC) plate. The hydrolyzed precursors reacted with an abundance of silanol (SiOH) groups on the TLC plates, covalently attaching the functionalized silane to its surface. The extent of modification by phenyl and amine was determined by the kinetics of each reaction and the exposure time at each point along the TLC plate. The local concentrations of phenyl and amine were measured using diffuse reflectance spectroscopy and X-ray photoelectron spectroscopy, respectively. The profile of the multi-component gradients strongly depended on the order of infusion, the direction of the gradient and the presence of available surface silanol groups. A slightly higher amount of phenyl can be deposited on the TLC plate by first modifying its surface with amine groups as they serve as a catalyst, enhancing condensation. Separation of water- and fat-soluble vitamins and the control of retention factors were demonstrated on the multi-component gradient TLC plates. Uniformly modified and single-component TLC plates gave different separations compared to the multi-component gradient plates. The retention factors of the individual vitamins depended on the order of surface modification, the spotting end, and whether the multi-component gradients align or oppose each other.

  7. Multicomponent seismic noise attenuation with multivariate order statistic filters

    Science.gov (United States)

    Wang, Chao; Wang, Yun; Wang, Xiaokai; Xun, Chao

    2016-10-01

    The vector relationship between multicomponent seismic data is highly important for multicomponent processing and interpretation, but this vector relationship could be damaged when each component is processed individually. To overcome the drawback of standard component-by-component filtering, multivariate order statistic filters are introduced and extended to attenuate the noise of multicomponent seismic data by treating such dataset as a vector wavefield rather than a set of scalar fields. According to the characteristics of seismic signals, we implement this type of multivariate filtering along local events. First, the optimal local events are recognized according to the similarity between the vector signals which are windowed from neighbouring seismic traces with a sliding time window along each trial trajectory. An efficient strategy is used to reduce the computational cost of similarity measurement for vector signals. Next, one vector sample each from the neighbouring traces are extracted along the optimal local event as the input data for a multivariate filter. Different multivariate filters are optimal for different noise. The multichannel modified trimmed mean (MTM) filter, as one of the multivariate order statistic filters, is applied to synthetic and field multicomponent seismic data to test its performance for attenuating white Gaussian noise. The results indicate that the multichannel MTM filter can attenuate noise while preserving the relative amplitude information of multicomponent seismic data more effectively than a single-channel filter.

  8. Exergy Rate Profile of Multicomponent Distillation System

    Directory of Open Access Journals (Sweden)

    Kehinde Adewale Adesina

    2016-07-01

    Full Text Available Exergy rate profiles, exergetic efficiency and irreversibility were used to examine the driving forces in multicomponent distillation system with the view to identifying feasible and efficient operating parameters. The mixture used comprised of 5% propane, 15% iso-butane, 25% nbutane, 20% iso-pentane and 35% n-pentane. Operating variables were feed temperature (-30 oC and -80 oC, pressure (800 kPa and 1200 kPa, and reflux-ratio (2 and 6. Stage-by-stage system exergy analysis was estimated. Column profiles of base case -30 oC, -80 oC, -30 oC-reflus ratio 6, -80 oC reflux ratio 6 and base case reflux ratio 6 did not crossed thus are thermodynamically feasible. Base case -30 oC-reflux ratio 2, -80 oC-reflux ratio 2, and base case-reflux ratio 2 were crossed and constricted and are infeasible. Base case results gave efficiency of 81.7% at depropanizer and 65.2% at debutanizer. Base cases sensitivity results with -30 oC, -80 oC and reflux ratio 6, efficiency range 57.40 – 70% and 65.20% - 54.90% for depropanizer and debutanizer respectively. Spitted cases gave 81.7% and 62.20% with more scatter profiles. Splitted feed base case -30 oC design gave the lowest overall system exergy loss rate of 1.12E+6 and efficiency of 95.70%. Design feasible parameters, system efficiency and irreversibility which form basis

  9. Sequence assembly

    DEFF Research Database (Denmark)

    Scheibye-Alsing, Karsten; Hoffmann, S.; Frankel, Annett Maria

    2009-01-01

    Despite the rapidly increasing number of sequenced and re-sequenced genomes, many issues regarding the computational assembly of large-scale sequencing data have remain unresolved. Computational assembly is crucial in large genome projects as well for the evolving high-throughput technologies...

  10. Mathematical Model for Multicomponent Adsorption Equilibria Using Only Pure Component Data

    DEFF Research Database (Denmark)

    Marcussen, Lis

    2000-01-01

    A mathematical model for nonideal adsorption equilibria in multicomponent mixtures is developed. It is applied with good results for pure substances and for prediction of strongly nonideal multicomponent equilibria using only pure component data. The model accounts for adsorbent...

  11. Supramolecular nanostructuring of silver surfaces via self-assembly of [60]fullerene and porphyrin modules

    NARCIS (Netherlands)

    Bonifazi, Davide; Kiebele, Andreas; Stöhr, Meike; Cheng, Fuyong; Jung, Thomas; Diederich, Francois; Spillmann, Hannes

    2007-01-01

    Recent achievements in our laboratory toward the "bottom-up" fabrication of addressable multicomponent molecular entities obtained by self-assembly of C-60 and porphyrins on Ag(100) and Ag(111) surfaces are described.. Scanning tunneling microscopy (STM) studies on ad-layers constituting monomeric

  12. Supramolecular nanostructuring of silver surfaces via self-assembly of [60]fullerene and porphyrin modules

    NARCIS (Netherlands)

    Bonifazi, Davide; Kiebele, Andreas; Stöhr, Meike; Cheng, Fuyong; Jung, Thomas; Diederich, Francois; Spillmann, Hannes

    2007-01-01

    Recent achievements in our laboratory toward the "bottom-up" fabrication of addressable multicomponent molecular entities obtained by self-assembly of C-60 and porphyrins on Ag(100) and Ag(111) surfaces are described.. Scanning tunneling microscopy (STM) studies on ad-layers constituting monomeric a

  13. Multicomponent Protein Cage Architectures for Photocatalysis

    Energy Technology Data Exchange (ETDEWEB)

    Douglas, Trevor [Montana State University

    2014-11-21

    The central focus of the work performed under this award has been to develop the bacteriophage P22 viral capsid as a vehicle for the encapsulation of catalyticaly active cargo materials and study their utility towards economic energy harvesting systems. We have demonstrated that the capsid of the bacteriophage P22 can be used to genetically program the assembly and encapsulation of a range of inorganic nanoparticles and protein cargoes. The P22 capsid uses a scaffold protein (SP) to direct the assembly of its coat protein (CP) into icosahedral capsids. By creating a genetic fusion of a desired cargo enzyme or a small peptide that can act as a nucleation site for subsequent NP growth, we have demonstrated the co-assembly of these SP-fusions and CP into stable “nano-reactors”. The cargo is sequestered inside the engineered capsid and can either be used directly as a nanocatalyst or for the nucleation and growth of inorganic or organic nanoparticles or polymers. The synthetic cargos (NP or polymers) were shown to have photocatalytic activity. The time dependent photophysics of a select few of these systems were studied to determine the underlying mechanisms and efficiency of light harversting. Enzyme cargos encapsulated within the P22 were thermally activated catalysts and their kinetic behavior was characterized. During the course of this work we have demonstrated that the method is a robust means to harness biology for materials applications and have initiated work into assembling the P22 nanoreactors into hierarchically ordered materials. The successful implementation of the work performed under this DOE grant provides us with a great deal of knowledge and a library of components to go forward towards the development of bioinspired catalytic materials for energy harvesting.

  14. MULTICOMPONENT SOLUTION FOR LOCAL ANAESTHESIA IN OPERATIONS ON EXTREMITIES

    Directory of Open Access Journals (Sweden)

    V.I. Sobolev

    2008-03-01

    Full Text Available The analysis of the results of local anaesthesia (LA in 89 patients aged 18 to 68 years with trauma and diseases of extremities has been carried out. The efficiency of perineural injected multicomponent solution of clonidine added to conventional mixture oflidocaine and phentanyl has been assessed. The multicomponent method has significantly prolonged the duration of local anaesthesia of 1% lidocaine solution providing reliable anaesthesia of plexus and peripheral nerves alongside the sufficient regional myoplegia and prolonged postoperative anesthetization. When there is no need of deep myoplegia Hallows to lower the concentration of lidocaine solution twofold, maintaining its efficiency, and to realize local anaesthesia of patients with high risk.

  15. A Weibull characterization for tensile fracture of multicomponent brittle fibers

    Science.gov (United States)

    Barrows, R. G.

    1977-01-01

    Necessary to the development and understanding of brittle fiber reinforced composites is a means to statistically describe fiber strength and strain-to-failure behavior. A statistical characterization for multicomponent brittle fibers is presented. The method, which is an extension of usual Weibull distribution procedures, statistically considers the components making up a fiber (e.g., substrate, sheath, and surface) as separate entities and taken together as in a fiber. Tensile data for silicon carbide fiber and for an experimental carbon-boron alloy fiber are evaluated in terms of the proposed multicomponent Weibull characterization.

  16. The Single Pass Multi-component Harvester

    Energy Technology Data Exchange (ETDEWEB)

    Reed Hoskinson; John R. Hess

    2004-08-01

    collection must be economically advantageous to the producer. To do all that, a single pass multi-component harvester system is most desirable. Results from our first prototype suggest that current combines probably do adequate threshing and that a separate chassis can be developed that does additional separation and that is economically feasible.

  17. Reconstruction of Metabolic Pathways, Protein Expression, and Homeostasis Machineries across Maize Bundle Sheath and Mesophyll Chloroplasts: Large-Scale Quantitative Proteomics Using the First Maize Genome Assembly1[W][OA

    Science.gov (United States)

    Friso, Giulia; Majeran, Wojciech; Huang, Mingshu; Sun, Qi; van Wijk, Klaas J.

    2010-01-01

    Chloroplasts in differentiated bundle sheath (BS) and mesophyll (M) cells of maize (Zea mays) leaves are specialized to accommodate C4 photosynthesis. This study provides a reconstruction of how metabolic pathways, protein expression, and homeostasis functions are quantitatively distributed across BS and M chloroplasts. This yielded new insights into cellular specialization. The experimental analysis was based on high-accuracy mass spectrometry, protein quantification by spectral counting, and the first maize genome assembly. A bioinformatics workflow was developed to deal with gene models, protein families, and gene duplications related to the polyploidy of maize; this avoided overidentification of proteins and resulted in more accurate protein quantification. A total of 1,105 proteins were assigned as potential chloroplast proteins, annotated for function, and quantified. Nearly complete coverage of primary carbon, starch, and tetrapyrole metabolism, as well as excellent coverage for fatty acid synthesis, isoprenoid, sulfur, nitrogen, and amino acid metabolism, was obtained. This showed, for example, quantitative and qualitative cell type-specific specialization in starch biosynthesis, arginine synthesis, nitrogen assimilation, and initial steps in sulfur assimilation. An extensive overview of BS and M chloroplast protein expression and homeostasis machineries (more than 200 proteins) demonstrated qualitative and quantitative differences between M and BS chloroplasts and BS-enhanced levels of the specialized chaperones ClpB3 and HSP90 that suggest active remodeling of the BS proteome. The reconstructed pathways are presented as detailed flow diagrams including annotation, relative protein abundance, and cell-specific expression pattern. Protein annotation and identification data, and projection of matched peptides on the protein models, are available online through the Plant Proteome Database. PMID:20089766

  18. IOP1 protein is an external component of the human cytosolic iron-sulfur cluster assembly (CIA) machinery and functions in the MMS19 protein-dependent CIA pathway.

    Science.gov (United States)

    Seki, Mineaki; Takeda, Yukiko; Iwai, Kazuhiro; Tanaka, Kiyoji

    2013-06-07

    The emerging link between iron metabolism and genome integrity is increasingly clear. Recent studies have revealed that MMS19 and cytosolic iron-sulfur cluster assembly (CIA) factors form a complex and have central roles in CIA pathway. However, the composition of the CIA complex, particularly the involvement of the Fe-S protein IOP1, is still unclear. The roles of each component are also largely unknown. Here, we show that MMS19, MIP18, and CIAO1 form a tight "core" complex and that IOP1 is an "external" component of this complex. Although IOP1 and the core complex form a complex both in vivo and in vitro, IOP1 behaves differently in vivo. A deficiency in any core component leads to down-regulation of all of the components. In contrast, IOP1 knockdown does not affect the level of any core component. In MMS19-overproducing cells, other core components are also up-regulated, but the protein level of IOP1 remains unchanged. IOP1 behaves like a target protein in the CIA reaction, like other Fe-S helicases, and the core complex may participate in the maturation process of IOP1. Alternatively, the core complex may catch and hold IOP1 when it becomes mature to prevent its degradation. In any case, IOP1 functions in the MMS19-dependent CIA pathway. We also reveal that MMS19 interacts with target proteins. MIP18 has a role to bridge MMS19 and CIAO1. CIAO1 also binds IOP1. Based on our in vivo and in vitro data, new models of the CIA machinery are proposed.

  19. Early Reading Intervention by Means of a Multicomponent Reading Game

    Science.gov (United States)

    van de Ven, M.; de Leeuw, L.; van Weerdenburg, M.; Steenbeek-Planting, E. G.

    2017-01-01

    This study examined the effects of an intervention with a multicomponent reading game on the development of reading skills in 60 Dutch primary school children with special educational needs. The game contains evidence-based reading exercises and is based on principles of applied gaming. Using a multiple baseline approach, we tested children's…

  20. Early reading intervention by means of a multicomponent reading game

    NARCIS (Netherlands)

    Ven, M.A.M. van de; Leeuw, L.C. de; Weerdenburg, M.W.C. van; Steenbeek-Planting, E.G.

    2017-01-01

    This study examined the effects of an intervention with a multicomponent reading game on the development of reading skills in 60 Dutch primary school children with special educational needs. The game contains evidence-based reading exercises and is based on principles of applied gaming. Using a

  1. THE THERMAL CHARACTERIZATION OF MULTICOMPONENT SYSTEMS BY ENTHALPY RELAXATION

    NARCIS (Netherlands)

    TENBRINKE, G; OUDHUIS, L; ELLIS, TS

    1994-01-01

    The phenomenon of enthalpy relaxation of amorphous glassy polymers has been developed into an analytical tool which can be applied to elucidate phase behavior and morphologically related phenomena of multi-component systems. We have both reviewed the experimental details concerning its application,

  2. On new electromagnetic waves in a multicomponent insulator

    NARCIS (Netherlands)

    Dubovik, V. M.

    The dispersion equation for additional transverse electromagnetic waves in a multicomponent amorphous insulator is analyzed in the vicinity of a narrow absorption line. Such waves can be excited due to spatial dispersion associated with fluctuation of the polarizability of insulator molecules. The

  3. Kelvin Equation for a Non-Ideal Multicomponent Mixture

    DEFF Research Database (Denmark)

    Shapiro, Alexander; Stenby, Erling Halfdan

    1997-01-01

    The Kelvin equation is generalized by application to a case of a multicomponent non-ideal mixture. Such a generalization is necessary in order to describe the two-phase equilibrium in a capillary medium with respect to both normal and retrograde condensation. The equation obtained is applied...... to the equilibrium state of a hydrocarbon mixture ina gas-condensate reservoir....

  4. Revision of outcome and mechanism of a new multicomponent reaction.

    Science.gov (United States)

    Carballares, Santiago; Espinosa, Juan F

    2005-06-09

    [reaction: see text] A recently reported multicomponent reaction (MCR) produces pyrido[1,2-a]pyrazines and not the previously described 1H-imidazol-4-yl-pyridines. This different structure is proposed on the basis of a new mechanism of formation and the spectroscopic data.

  5. Theory of sheath in a collisional multi-component plasma

    Indian Academy of Sciences (India)

    M K Mahanta; K S Goswami

    2001-04-01

    The aim of this brief report is to study the behaviour of sheath structure in a multicomponent plasma with dust-neutral collisions. The plasma consists of electrons, ions, micron size negatively charged dust particles and neutrals. The sheath-edge potential and sheath width are calculated for collisionally dominated sheath. Comparison of collisionless and collisionally dominated sheath are made.

  6. Multicomponent Linguistic Awareness Intervention for At-Risk Kindergarteners

    Science.gov (United States)

    Zoski, Jennifer L.; Erickson, Karen A.

    2017-01-01

    This study investigated the feasibility of multicomponent linguistic awareness intervention on early literacy skills in at-risk kindergarteners. Seventeen students, including native Spanish-speaking English language learners (n = 10) and native English speakers (n = 7), participated in a 6-week small-group therapy program, for a total of 12…

  7. Efficacy of Self-Instructional Talk and Multicomponent Techniques in ...

    African Journals Online (AJOL)

    Efficacy of Self-Instructional Talk and Multicomponent Techniques in ... to eight weeks of training sessions while the participants in the control were not exposed to any ... There was no interaction effect of gender on treatment as the males were ...

  8. Multicomponent Droplet Evaporation on Chemical Micro-Patterned Surfaces

    Science.gov (United States)

    He, Minghao; Liao, Dong; Qiu, Huihe

    2017-02-01

    The evaporation and dynamics of a multicomponent droplet on a heated chemical patterned surface were presented. Comparing to the evaporation process of a multicomponent droplet on a homogenous surface, it is found that the chemical patterned surface can not only enhance evaporation by elongating the contact line, but also change the evaporation process from three regimes for the homogenous surface including constant contact line (CCL) regime, constant contact angle (CCA) regime and mix mode (MM) to two regimes, i.e. constant contact line (CCL) and moving contact line (MCL) regimes. The mechanism of contact line stepwise movement in MCL regimes in the microscopic range is investigated in detail. In addition, an improved local force model on the contact line was employed for analyzing the critical receding contact angles on homogenous and patterned surfaces. The analysis results agree well for both surfaces, and confirm that the transition from CCL to MCL regimes indicated droplet composition changes from multicomponent to monocomponent, providing an important metric to predict and control the dynamic behavior and composition of a multicomponent droplet using a patterned surface.

  9. Capabilities and limitations of predictive engineering theories for multicomponent adsorption

    DEFF Research Database (Denmark)

    Bartholdy, Sofie; Bjørner, Martin Gamel; Solbraa, Even;

    2013-01-01

    ensured that the description of single gas/solid systems is as accurate as possible, but besides this, the calculations for multicomponent systems are straight predictions. The work revealed on one side that all three theories yield for some systems similar predictions, with IAST and MPTA performing...

  10. Spinodal decomposition in multicomponent fluid mixtures: A molecular dynamics study

    DEFF Research Database (Denmark)

    Laradji, Mohamed; Mouritsen, Ole G.; Toxvaerd, Søren

    1996-01-01

    We have investigated the effect of the number p of components on the dynamics of phase separation in two-dimensional symmetric multicomponent fluids. In contrast to concentrated two-dimensional binary fluids, where the growth dynamics is controlled by the coupling of the velocity held to the orde...

  11. Drying of liquid food droplets. Enzyme inactivation and multicomponent diffusion.

    NARCIS (Netherlands)

    Meerdink, G.

    1993-01-01

    In this thesis the drying of liquid food droplets is studied from three different points of view: drying kinetics, enzyme inactivation and multicomponent diffusion. Mathematical models are developed and validated experimentally.Drying experiments are performed with suspended droplets and with free f

  12. The study of antioxidant activity of multicomponent vegetable puree

    Directory of Open Access Journals (Sweden)

    A. V. Trushechkin

    2013-01-01

    Full Text Available Studied the antioxidant activity of multicomponent vegetable puree, consisting of 20 % of eggplant, 20 % of zucchini, 16 % of bell peppers, 15 % of tomatoes, 14 % of carrots, 10 % of onions and 5 % of garlic. These results showed an increase in concentration of the antioxidant activity of puree and, consequently, increase its quality.

  13. Synthesis of conformationally constrained peptidomimetics using multicomponent reactions

    NARCIS (Netherlands)

    Scheffelaar, R.; Klein Nijenhuis, R.A.; Paravidino, M.; Lutz, M.; Spek, A.L.; Ehlers, A.W.; de Kanter, F.J.J.; Groen, M.B.; Orru, R.V.A.; Ruijter, E.

    2009-01-01

    A novel modular synthetic approach toward constrained peptidomimetics is reported. The approach involves a highly efficient three-step sequence including two multicomponent reactions, thus allowing unprecedented diversification of both the peptide moieties and the turn-inducing scaffold. The turn-in

  14. Efficient isocyanide-less isocyanide-based multicomponent reactions

    NARCIS (Netherlands)

    Neochoritis, Dinos; Stotani, Silvia; Mishra, Bhupendra; Dömling, Alexander

    2015-01-01

    Isocyanides are the "Jekyll and Hyde" of organic chemistry allowing for extremely interesting transformations that are not only extremely odorous but also noxious. Therefore, an isocyanide-less isocyanide-based multicomponent reaction (IMCR) has been developed, and this protocol is expected to

  15. A versatile multi-component one-pot thiazole synthesis

    NARCIS (Netherlands)

    Heck, Stefan; Dömling, Alexander

    2000-01-01

    A new multi-component reaction (MCR) of oxo components, primary amines, thiocarboxylic acids and a special isocyanide yielding 2,4-disubstituted thiazoles is described. This one-pot, one-step reaction is an alternative to current methods of thiazole ring formation and can be applied to combinatorial

  16. Multicomponent Training of Teachers of Students with Severe Disabilities

    Science.gov (United States)

    Brown, Phillip; Stephenson, Jennifer; Carter, Mark

    2014-01-01

    Over the last decade, the obligation of general and special educators to utilize evidence-based instructional practices has become more prominent. Research increasingly suggests the failure of didactic teacher training alone to ensure implementation with fidelity of these practices by teachers in their classrooms. Multicomponent training (MCT)…

  17. A versatile multi-component one-pot thiazole synthesis

    NARCIS (Netherlands)

    Heck, Stefan; Dömling, Alexander

    2000-01-01

    A new multi-component reaction (MCR) of oxo components, primary amines, thiocarboxylic acids and a special isocyanide yielding 2,4-disubstituted thiazoles is described. This one-pot, one-step reaction is an alternative to current methods of thiazole ring formation and can be applied to combinatorial

  18. A type of multi-component integrable hierarchy

    Institute of Scientific and Technical Information of China (English)

    Zhang Yu-Feng; Zhang Yu-Sen

    2004-01-01

    A new isospectral problem is established by constructing a simple interesting loop algebra. A commutation operation of the loop algebra is as straightforward as the loop algebra (A)1. It follows that a type of multi-component integrable hierarchy is obtained. This can be used as a general method.

  19. THE THERMAL CHARACTERIZATION OF MULTICOMPONENT SYSTEMS BY ENTHALPY RELAXATION

    NARCIS (Netherlands)

    TENBRINKE, G; OUDHUIS, L; ELLIS, TS

    1994-01-01

    The phenomenon of enthalpy relaxation of amorphous glassy polymers has been developed into an analytical tool which can be applied to elucidate phase behavior and morphologically related phenomena of multi-component systems. We have both reviewed the experimental details concerning its application,

  20. Pathway Commons, a web resource for biological pathway data.

    Science.gov (United States)

    Cerami, Ethan G; Gross, Benjamin E; Demir, Emek; Rodchenkov, Igor; Babur, Ozgün; Anwar, Nadia; Schultz, Nikolaus; Bader, Gary D; Sander, Chris

    2011-01-01

    Pathway Commons (http://www.pathwaycommons.org) is a collection of publicly available pathway data from multiple organisms. Pathway Commons provides a web-based interface that enables biologists to browse and search a comprehensive collection of pathways from multiple sources represented in a common language, a download site that provides integrated bulk sets of pathway information in standard or convenient formats and a web service that software developers can use to conveniently query and access all data. Database providers can share their pathway data via a common repository. Pathways include biochemical reactions, complex assembly, transport and catalysis events and physical interactions involving proteins, DNA, RNA, small molecules and complexes. Pathway Commons aims to collect and integrate all public pathway data available in standard formats. Pathway Commons currently contains data from nine databases with over 1400 pathways and 687,000 interactions and will be continually expanded and updated.

  1. Remembering a Shape -- Assembling a Memory

    Science.gov (United States)

    Zeravcic, Zorana; Murugan, Arvind; Brenner, Michael; Leibler, Stanislas

    2014-03-01

    Recently we have been developing a new connection between self-assembly and neural networks, where a multi-component particle system with specified interaction rules between its components is mapped onto a multi-state Hopfield neural network model. Within this framework, a fixed interaction pattern of neurons representing a ``memory'' maps to particle interactions encoding a certain structure. Properties of neural networks motivate new types of questions: Can the interaction energies of particles code for multiple structures at the same time? Can stored structures be retrieved by throwing in a nucleation seed (i.e., a small assembly of particles) and have it complete into the desired stored structure? Can we define a capacity, i.e., a maximal number of structures that can be retrieved with limited error? We investigate these questions using numerical simulations of different types of building blocks with short-range interactions.

  2. Timing of pathogen adaptation to a multicomponent treatment.

    Directory of Open Access Journals (Sweden)

    Romain Bourget

    Full Text Available The sustainable use of multicomponent treatments such as combination therapies, combination vaccines/chemicals, and plants carrying multigenic resistance requires an understanding of how their population-wide deployment affects the speed of the pathogen adaptation. Here, we develop a stochastic model describing the emergence of a mutant pathogen and its dynamics in a heterogeneous host population split into various types by the management strategy. Based on a multi-type Markov birth and death process, the model can be used to provide a basic understanding of how the life-cycle parameters of the pathogen population, and the controllable parameters of a management strategy affect the speed at which a pathogen adapts to a multicomponent treatment. Our results reveal the importance of coupling stochastic mutation and migration processes, and illustrate how their stochasticity can alter our view of the principles of managing pathogen adaptive dynamics at the population level. In particular, we identify the growth and migration rates that allow pathogens to adapt to a multicomponent treatment even if it is deployed on only small proportions of the host. In contrast to the accepted view, our model suggests that treatment durability should not systematically be identified with mutation cost. We show also that associating a multicomponent treatment with defeated monocomponent treatments can be more durable than associating it with intermediate treatments including only some of the components. We conclude that the explicit modelling of stochastic processes underlying evolutionary dynamics could help to elucidate the principles of the sustainable use of multicomponent treatments in population-wide management strategies intended to impede the evolution of harmful populations.

  3. Sabot assembly

    Energy Technology Data Exchange (ETDEWEB)

    Bzorgi, Fariborz

    2016-11-08

    A sabot assembly includes a projectile and a housing dimensioned and configured for receiving the projectile. An air pressure cavity having a cavity diameter is disposed between a front end and a rear end of the housing. Air intake nozzles are in fluid communication with the air pressure cavity and each has a nozzle diameter less than the cavity diameter. In operation, air flows through the plurality of air intake nozzles and into the air pressure cavity upon firing of the projectile from a gun barrel to pressurize the air pressure cavity for assisting in separation of the housing from the projectile upon the sabot assembly exiting the gun barrel.

  4. Assembling consumption

    DEFF Research Database (Denmark)

    Assembling Consumption marks a definitive step in the institutionalisation of qualitative business research. By gathering leading scholars and educators who study markets, marketing and consumption through the lenses of philosophy, sociology and anthropology, this book clarifies and applies...... societies. This is an essential reading for both seasoned scholars and advanced students of markets, economies and social forms of consumption....

  5. Electrostatic twisted modes in multi-component dusty plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Ayub, M. K. [Theoretical Plasma Physics Division, PINSTECH, P. O. Nilore, Islamabad (Pakistan); National Centre for Physics, Shahdra Valley Road, Quaid-i-Azam University Campus, Islamabad 44000 (Pakistan); Pohang University of Sciences and Technology, Pohang, Gyeongbuk 790-784 (Korea, Republic of); Ali, S. [National Centre for Physics, Shahdra Valley Road, Quaid-i-Azam University Campus, Islamabad 44000 (Pakistan); Ikram, M. [Department of Physics, Hazara University, Mansehra 21300 (Pakistan)

    2016-01-15

    Various electrostatic twisted modes are re-investigated with finite orbital angular momentum in an unmagnetized collisionless multi-component dusty plasma, consisting of positive/negative charged dust particles, ions, and electrons. For this purpose, hydrodynamical equations are employed to obtain paraxial equations in terms of density perturbations, while assuming the Gaussian and Laguerre-Gaussian (LG) beam solutions. Specifically, approximated solutions for potential problem are studied by using the paraxial approximation and expressed the electric field components in terms of LG functions. The energy fluxes associated with these modes are computed and corresponding expressions for orbital angular momenta are derived. Numerical analyses reveal that radial/angular mode numbers as well as dust number density and dust charging states strongly modify the LG potential profiles attributed to different electrostatic modes. Our results are important for understanding particle transport and energy transfer due to wave excitations in multi-component dusty plasmas.

  6. Predicting Microstructure and Microsegregation in Multicomponent Aluminum Alloys

    Science.gov (United States)

    Yan, Xinyan; Ding, Ling; Chen, ShuangLin; Xie, Fanyou; Chu, M.; Chang, Y. Austin

    Accurate predictions of microstructure and microsegregation in metallic alloys are highly important for applications such as alloy design and process optimization. Restricted assumptions concerning the phase diagram could easily lead to erroneous predictions. The best approach is to couple microsegregation modeling with phase diagram computations. A newly developed numerical model for the prediction of microstructure and microsegregation in multicomponent alloys during dendritic solidification was introduced. The micromodel is directly coupled with phase diagram calculations using a user-friendly and robust phase diagram calculation engine-PANDAT. Solid state back diffusion, undercooling and coarsening effects are included in this model, and the experimentally measured cooling curves are used as the inputs to carry out the calculations. This model has been used to predict the microstructure and microsegregation in two multicomponent aluminum alloys, 2219 and 7050. The calculated values were confirmed using results obtained from directional solidification.

  7. Multicomponent delirium prevention: not as effective as NICE suggest?

    Science.gov (United States)

    Teale, Elizabeth; Young, John

    2015-11-01

    Multicomponent delirium prevention strategies have been shown in intervention studies consistently to reduce the occurrence of delirium. Based on this convincing evidence base, the National Institute for Health and Care Excellence has advocated the widespread adoption of multicomponent delirium prevention interventions into the routine inpatient care of older people. However, despite successful reductions in incident delirium of about a third, anticipated reductions in mortality or admissions to long-term care--both clinically important endpoints statistically correlated with the occurrence of delirium--have not been conclusively observed. We hypothesise that the reasons for this disconnection are partly methodological, due to difficulties in delirium detection and blinding of study personnel to the intervention, but predominantly due to the underlying relationship between delirium and the abnormal health state of frailty; the interaction between these two geriatric syndromes is currently poorly understood.

  8. Generalized statistical model for multicomponent adsorption equilibria on zeolites

    Energy Technology Data Exchange (ETDEWEB)

    Rota, R.; Gamba, G.; Paludetto, R.; Carra, S.; Morbidelli, M. (Dipartimento di Chimica Fisica Applicata, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano (IT))

    1988-05-01

    The statistical thermodynamic approach to multicomponent adsorption equilibria on zeolites has been extended to nonideal systems, through the correction of cross coefficients characterizing the interaction between unlike molecules. Estimation of the model parameters requires experimental binary equilibrium data. Comparisons with the classical model based on adsorbed solution theory are reported for three nonideal ternary systems. The two approaches provide comparable results in the simulation of binary and ternary adsorption equilibrium data at constant temperature and pressure.

  9. A generalized eigenvalue problem solution for an uncoupled multicomponent system

    Energy Technology Data Exchange (ETDEWEB)

    Diago-Cisneros, L; Fernandez-Anaya, G; Bonfanti-Escalera, G [Departamento de Fisica y Matematicas, Universidad Iberoamericana, CP 01219, DF Mexico (Mexico)], E-mail: ldiago@fisica.uh.cu

    2008-09-15

    Meaningful and well-founded physical quantities are convincingly determined by eigenvalue problem solutions emerging from a second-order N-coupled system of differential equations, known as the Sturm-Liouville matrix boundary problem. Via the generalized Schur decomposition procedure and imposing to the multicomponent system to be decoupled, which is a widely accepted remarkable physical situation, we have unambiguously demonstrated a simultaneously triangularizable scenario for (2Nx2N) matrices content in a generalized eigenvalue equation.

  10. Description of Wiener bounds of multicomponent composites by barycentric coordinates

    Science.gov (United States)

    Peiponen, Kai-Erik; Gornov, Evgeny

    2006-07-01

    Wiener bounds for effective complex permittivity of multicomponent composites are treated by use of barycentric coordinates, a convex hull, and conformal mapping in a complex plane. Depending on the complexity of the multiphase system, the bounds provide singly or multiply connected regions that can be used in estimating the limits of the effective permittivity of the composite. The present modeling is important, e.g., in estimating spectral properties of nanocomposites in engineering and nanomedicine and in terahertz-based security imaging.

  11. Elastic envelope inversion using multicomponent seismic data without low frequency

    OpenAIRE

    2014-01-01

    Low frequency is a key issue to reduce the nonlinearity of elastic full waveform inversion. Hence, the lack of low frequency in recorded seismic data is one of the most challenging problems in elastic full waveform inversion. Theoretical derivations and numerical analysis are presented in this paper to show that envelope operator can retrieve strong low frequency modulation signal demodulated in multicomponent data, no matter what the frequency bands of the data is. With the be...

  12. Sensor Arrays from Multicomponent Micropatterned Nanoparticles and Graphene

    Science.gov (United States)

    2013-10-10

    order to achieve chemical selectivity and stability for multiple gas sensing applications, in this study, we deposited graphene on a SiO2 /Si substrate...nanoparticles and graphene 5a. CONTRACT NUMBER 5b. GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR(S) 5d. PROJECT NUMBER 5e. TASK NUMBER 5f. WORK...A novel approach for multicomponent patterning metal/metal oxide nanoparticles on graphene was developed, which involves region-specific plasma

  13. Phase behavior of multicomponent membranes: Experimental and computational techniques

    DEFF Research Database (Denmark)

    Bagatolli, Luis; Kumar, P.B. Sunil

    2009-01-01

    membranes. Current increase in interest in the domain formation in multicomponent membranes also stems from the experiments demonstrating liquid ordered-liquid disordered coexistence in mixtures of lipids and cholesterol and the success of several computational models in predicting their behavior....... This review includes basic foundations on membrane model systems and experimental approaches applied in the membrane research area, stressing on recent advances in the experimental and computational techniques....

  14. Dispersionless and multicomponent BKP hierarchies with quantum torus symmetries

    Science.gov (United States)

    Li, Chuanzhong

    2017-09-01

    In this article, we will construct the additional perturbative quantum torus symmetry of the dispersionless BKP hierarchy based on the W∞ infinite dimensional Lie symmetry. These results show that the complete quantum torus symmetry is broken from the BKP hierarchy to its dispersionless hierarchies. Further a series of additional flows of the multicomponent BKP hierarchy will be defined and these flows constitute an N-folds direct product of the positive half of the quantum torus symmetries.

  15. A micropolar mixture theory of multi-component porous media

    Institute of Scientific and Technical Information of China (English)

    Lu HUANG; Cheng-gang ZHAO

    2009-01-01

    A mixture theory is developed for multi-component micropolar porous media with a combination of the hybrid mixture theory and the micropolar continuum theory.The system is modeled as multi-component micropolar elastic solids saturated with multicomponent micropolar viscous fluids. Balance equations are given through the mixture theory. Constitutive equations are developed based on the second law of thermodynamics and constitutive assumptions. Taking account of compressibility of solid phases,the volume fraction of fluid as an independent state variable is introduced in the free energy function,and the dynamic compatibility condition is obtained to restrict the change of pressure difference on the solid-fluid interface. The constructed constitutive equations are used to close the field equations. The linear field equations are obtained using a linearization procedure,and the micropolar thermo-hydro-mechanical component transport model is established. This model can be applied to practical problems,such as contaminant,drug,and pesticide transport. When the proposed model is supposed to be porous media,and both fluid and solid are single-component,it will almost agree with Eringen's model.

  16. Multicomponent Fitness Training Improves Walking Economy in Older Adults.

    Science.gov (United States)

    Valenti, Giulio; Bonomi, Alberto Giovanni; Westerterp, Klaas Roelof

    2016-07-01

    Walking economy declines with increasing age, possibly leading to mobility limitation in older adults. Multicomponent fitness training could delay the decline in walking economy. This study aimed to determine the effect of multicomponent fitness training on walking economy in older adults. Participants were untrained adults, age 50 to 83 yr (N = 26, 10 males, age = 63 ± 6 yr, BMI = 25.6 ± 2.1 kg·m, mean ± SD). A control group was also recruited (N = 16, 9 males, age = 66 ± 10 yr, BMI = 25.4 ± 3.0 kg·m), matching the intervention group for age, weight, body composition, and fitness. The intervention group followed a multicomponent fitness program of 1 h, twice per week during 1 yr. The control group did not take part in any physical training. Fat-free mass, walking economy, and maximal oxygen uptake (V˙O2max) were measured in both groups before and after the year. Walking economy was measured with indirect calorimetry as the lowest energy needed to displace 1 kg of body mass for 1 m while walking on a treadmill. The data were compared between the two groups with repeated-measures ANOVA. Thirty-two subjects completed all measurements. There was an interaction between the effects of time and group on V˙O2max (P economy (P economy. Thus, training programs could delay mobility limitation with increasing age.

  17. Hydrodynamic theory of diffusion in two-temperature multicomponent plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Ramshaw, J.D.; Chang, C.H. [Idaho National Engineering Lab., Idaho Falls, ID (United States)

    1995-12-31

    Detailed numerical simulations of multicomponent plasmas require tractable expressions for species diffusion fluxes, which must be consistent with the given plasma current density J{sub q} to preserve local charge neutrality. The common situation in which J{sub q} = 0 is referred to as ambipolar diffusion. The use of formal kinetic theory in this context leads to results of formidable complexity. We derive simple tractable approximations for the diffusion fluxes in two-temperature multicomponent plasmas by means of a generalization of the hydrodynamical approach used by Maxwell, Stefan, Furry, and Williams. The resulting diffusion fluxes obey generalized Stefan-Maxwell equations that contain driving forces corresponding to ordinary, forced, pressure, and thermal diffusion. The ordinary diffusion fluxes are driven by gradients in pressure fractions rather than mole fractions. Simplifications due to the small electron mass are systematically exploited and lead to a general expression for the ambipolar electric field in the limit of infinite electrical conductivity. We present a self-consistent effective binary diffusion approximation for the diffusion fluxes. This approximation is well suited to numerical implementation and is currently in use in our LAVA computer code for simulating multicomponent thermal plasmas. Applications to date include a successful simulation of demixing effects in an argon-helium plasma jet, for which selected computational results are presented. Generalizations of the diffusion theory to finite electrical conductivity and nonzero magnetic field are currently in progress.

  18. Development of multicomponent coupled-cluster method for investigation of multiexcitonic interactions

    CERN Document Server

    Ellis, Benjamin H; Chakraborty, Arindam

    2015-01-01

    Multicomponent systems are defined as chemical systems that require a quantum mechanical description of two or more different types of particles. Non-Born-Oppenheimer electron-nuclear interactions in molecules, electron-hole interactions in electronically excited nanoparticles, and electron-positron interactions are examples of physical systems that require a multicomponent quantum mechanical formalism. The central challenge in the theoretical treatment of multicomponent systems is capturing the many-body correlation effects that exist not only between particles of identical types (electron-electron) but also between particles of different types (electron-nuclear and electron-hole). In this work, the development and implementation of multicomponent coupled-cluster (mcCC) theory for treating particle-particle correlation in multicomponent systems is presented. This method provides a balanced treatment of many-particle correlation in a general multicomponent system while maintaining a size-consistent and size-e...

  19. Dump assembly

    Science.gov (United States)

    Goldmann, Louis H.

    1986-01-01

    A dump assembly having a fixed conduit and a rotatable conduit provided with overlapping plates, respectively, at their adjacent ends. The plates are formed with openings, respectively, normally offset from each other to block flow. The other end of the rotatable conduit is provided with means for securing the open end of a filled container thereto. Rotation of the rotatable conduit raises and inverts the container to empty the contents while concurrently aligning the conduit openings to permit flow of material therethrough.

  20. Efficient Formation of Multicomponent Ion Gels by Stepwise Self-Assembly of Thermoresponsive ABC Triblock Terpolymers

    Science.gov (United States)

    Danielsen, Scott; Zhou, Can; Lodge, Timothy

    2013-03-01

    The gelation behavior of a poly(ethylene-alt-propylene)- b-poly(ethylene oxide)- b-poly(N-isopropyl acrylamide) (PON) triblock terpolymer in room-temperature ionic liquids, 1-butyl-3-methylimidazolium tetrafluoroborate ([BMIM][BF4]) and 1-ethyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide ([EMIM] [TFSI]), has been studied by rheology over the concentration range 1-10 wt.%. PON terpolymers have proven better gelation efficiency and mechanical properties (modulus) in hydrogels. Physical ion gels from PON terpolymers in [BMIM][BF4] and [EMIM][TFSI] have been studied to determine improvements in gelation efficiency and mechanical properties (modulus) for triblock terpolymers. A two-compartment micellar network is believed to result from the stepwise gelation of PON terpolymers involving micellization at elevated temperatures and gelation at lower temperatures.

  1. General Assembly

    CERN Multimedia

    Staff Association

    2016-01-01

    5th April, 2016 – Ordinary General Assembly of the Staff Association! In the first semester of each year, the Staff Association (SA) invites its members to attend and participate in the Ordinary General Assembly (OGA). This year the OGA will be held on Tuesday, April 5th 2016 from 11:00 to 12:00 in BE Auditorium, Meyrin (6-2-024). During the Ordinary General Assembly, the activity and financial reports of the SA are presented and submitted for approval to the members. This is the occasion to get a global view on the activities of the SA, its financial management, and an opportunity to express one’s opinion, including taking part in the votes. Other points are listed on the agenda, as proposed by the Staff Council. Who can vote? Only “ordinary” members (MPE) of the SA can vote. Associated members (MPA) of the SA and/or affiliated pensioners have a right to vote on those topics that are of direct interest to them. Who can give his/her opinion? The Ordinary General Asse...

  2. Betti designature and elastic demultiple of multi-component seismic data

    OpenAIRE

    2003-01-01

    In this work I show that Bettis's theorem provides the theoretical basis for eliminating the physical response of the medium above the receiver surface (overburden) in the multi-component source, multi-component receiver seismic experiment. Other than the position of the orthogonally oriented source elements, no source characteristics are required to eliminate all seismic waves scattered from the overburden. The physical radiation characteristics (signatures) of the multi-component sources ar...

  3. Multicomponent versus domino reactions: One-pot free-radical synthesis of β-amino-ethers and β-amino-alcohols

    Directory of Open Access Journals (Sweden)

    Bianca Rossi

    2015-01-01

    Full Text Available Following an optimized multicomponent procedure, an aryl amine, a ketone, and a cyclic ether or an alcohol molecule are assembled in a one-pot synthesis by nucleophilic radical addition of ketyl radicals to ketimines generated in situ. The reaction occurs under mild conditions by mediation of the TiCl4/Zn/t-BuOOH system, leading to the formation of quaternary β-amino-ethers and -alcohols. The new reaction conditions guarantee good selectivity by preventing the formation of secondary products. The secondary products are possibly derived from a competitive domino reaction, which involves further oxidation of the ketyl radicals.

  4. Equivalence of two models in single-phase multicomponent flow simulations

    KAUST Repository

    Wu, Yuanqing

    2016-02-28

    In this work, two models to simulate the single-phase multicomponent flow in reservoirs are introduced: single-phase multicomponent flow model and two-phase compositional flow model. Because the single-phase multicomponent flow is a special case of the two-phase compositional flow, the two-phase compositional flow model can also simulate the case. We compare and analyze the two models when simulating the single-phase multicomponent flow, and then demonstrate the equivalence of the two models mathematically. An experiment is also carried out to verify the equivalence of the two models.

  5. Screening of multicomponent crystals of L-tryptophan with three isomers of pyridinedicarboxylic acids

    Science.gov (United States)

    Das, Babulal

    2016-08-01

    Multicomponent crystallization of L-tryptophan with three different isomers of pyridinedicarboxylic acids, namely, 2,3-pyridinedicarboxylic acid (2,3-PDA), 2,5-pyridinedicarboxylic acid (2,5-PDA) and 2,6-pyridinedicarboxylic acid (2,6-PDA), were screened using conventional solution cocrystallization technique. Whereas the new phases derived from the amino acid with 2,3-PDA or 2,5-PDA were analyzed using powder X-ray diffraction and thermal analysis techniques, the crystalline phase synthesized from 2,6-substituted isomer was further characterized by single crystal X-ray diffraction. Structural analysis revealed that the amino acid exists in the zwitterionic form interacting with the neutral 2,6-PDA by strong intermolecular hydrogen bonding. The components in the co-crystal self-assemble leading to a three dimensional hydrogen bonded closed packed network structure. Isothermal calorimetric titration showed that among the three isomers, 2,6-PDA showed relatively strong binding interaction towards the amino acid in water at 298 K. All the crystals exhibit marginal quenching of fluorescence properties of L-tryptophan in the solid state.

  6. General Assembly

    CERN Multimedia

    Staff Association

    2015-01-01

    Mardi 5 mai à 11 h 00 Salle 13-2-005 Conformément aux statuts de l’Association du personnel, une Assemblée générale ordinaire est organisée une fois par année (article IV.2.1). Projet d’ordre du jour : 1- Adoption de l’ordre du jour. 2- Approbation du procès-verbal de l’Assemblée générale ordinaire du 22 mai 2014. 3- Présentation et approbation du rapport d’activités 2014. 4- Présentation et approbation du rapport financier 2014. 5- Présentation et approbation du rapport des vérificateurs aux comptes pour 2014. 6- Programme 2015. 7- Présentation et approbation du projet de budget 2015 et taux de cotisation pour 2015. 8- Pas de modifications aux Statuts de l'Association du personnel proposée. 9- Élections des membres de la Commission é...

  7. General Assembly

    CERN Multimedia

    Staff Association

    2016-01-01

    Mardi 5 avril à 11 h 00 BE Auditorium Meyrin (6-2-024) Conformément aux statuts de l’Association du personnel, une Assemblée générale ordinaire est organisée une fois par année (article IV.2.1). Projet d’ordre du jour : Adoption de l’ordre du jour. Approbation du procès-verbal de l’Assemblée générale ordinaire du 5 mai 2015. Présentation et approbation du rapport d’activités 2015. Présentation et approbation du rapport financier 2015. Présentation et approbation du rapport des vérificateurs aux comptes pour 2015. Programme de travail 2016. Présentation et approbation du projet de budget 2016 Approbation du taux de cotisation pour 2017. Modifications aux Statuts de l'Association du personnel proposée. Élections des membres de la Commissio...

  8. General assembly

    CERN Multimedia

    Staff Association

    2015-01-01

    Mardi 5 mai à 11 h 00 Salle 13-2-005 Conformément aux statuts de l’Association du personnel, une Assemblée générale ordinaire est organisée une fois par année (article IV.2.1). Projet d’ordre du jour : Adoption de l’ordre du jour. Approbation du procès-verbal de l’Assemblée générale ordinaire du 22 mai 2014. Présentation et approbation du rapport d’activités 2014. Présentation et approbation du rapport financier 2014. Présentation et approbation du rapport des vérificateurs aux comptes pour 2014. Programme 2015. Présentation et approbation du projet de budget 2015 et taux de cotisation pour 2015. Pas de modifications aux Statuts de l'Association du personnel proposée. Élections des membres de la Commission électorale. &am...

  9. General Assembly

    CERN Multimedia

    Staff Association

    2017-01-01

    Conformément aux statuts de l’Association du personnel, une Assemblée générale ordinaire est organisée une fois par année (article IV.2.1). Projet d’ordre du jour : Adoption de l’ordre du jour. Approbation du procès-verbal de l’Assemblée générale ordinaire du 5 avril 2016. Présentation et approbation du rapport d’activités 2016. Présentation et approbation du rapport financier 2016. Présentation et approbation du rapport des vérificateurs aux comptes pour 2016. Programme de travail 2017. Présentation et approbation du projet de budget 2017 Approbation du taux de cotisation pour 2018. Modifications aux Statuts de l'Association du personnel proposées. Élections des membres de la Commission électorale. Élections des vérifica...

  10. Induced pluripotent stem cell-derived hepatocytes and endothelial cells in multi-component hydrogel fibers for liver tissue engineering.

    Science.gov (United States)

    Du, Chan; Narayanan, Karthikeyan; Leong, Meng Fatt; Wan, Andrew C A

    2014-07-01

    Liver tissue engineering requires a suitable cell source, methodologies to assemble the cells within their niche microenvironments in a spatially defined manner, and vascularization of the construct in vivo for maintenance of hepatocyte viability and function. Recently, we have developed methods of encapsulating cells within separate domains in multi-component hydrogel fibers and methods of assembling fibers to form 3D-patterned tissue constructs. In the present work, we have combined these approaches to encapsulate hepatocytes and endothelial cells within their specific niches, and to assemble them into endothelialized liver tissue constructs. The hepatocytes and endothelial cells were obtained in parallel by differentiating human recombinant protein-induced human pluripotent stem cells, resulting in a construct which contained genetically identical endothelial and parenchymal elements. We were able to demonstrate that the presence of endothelial cells in the scaffold significantly improved hepatocyte function in vitro and facilitated vascularization of the scaffold when implanted in a mouse partial hepatectomy model. The in vivo studies further asserted that integration of the scaffold with host vasculature had occurred, as demonstrated by the presence of human albumin in the mouse serum. Copyright © 2014 Elsevier Ltd. All rights reserved.

  11. Multicomponent aerosol dynamics model UHMA: model development and validation

    Directory of Open Access Journals (Sweden)

    H. Korhonen

    2004-01-01

    Full Text Available A size-segregated aerosol dynamics model UHMA (University of Helsinki Multicomponent Aerosol model was developed for studies of multicomponent tropospheric aerosol particles. The model includes major aerosol microphysical processes in the atmosphere with a focus on new particle formation and growth; thus it incorporates particle coagulation and multicomponent condensation, applying a revised treatment of condensation flux onto free molecular regime particles and the activation of nanosized clusters by organic vapours (Nano-Köhler theory, as well as recent parameterizations for binary H2SO4-H2O and ternary H2SO4-NH3-H2O homogeneous nucleation and dry deposition. The representation of particle size distribution can be chosen from three sectional methods: the hybrid method, the moving center method, and the retracking method in which moving sections are retracked to a fixed grid after a certain time interval. All these methods can treat particle emissions and atmospheric transport consistently, and are therefore suitable for use in large scale atmospheric models. In a test simulation against an accurate high resolution solution, all the methods showed reasonable treatment of new particle formation with 20 size sections although the hybrid and the retracking methods suffered from artificial widening of the distribution. The moving center approach, on the other hand, showed extra dents in the particle size distribution and failed to predict the onset of detectable particle formation. In a separate test simulation of an observed nucleation event, the model captured the key qualitative behaviour of the system well. Furthermore, its prediction of the organic volume fraction in newly formed particles, suggesting values as high as 0.5 for 3–4 nm particles and approximately 0.8 for 10 nm particles, agrees with recent indirect composition measurements.

  12. Multicomponent aerosol dynamics model UHMA: model development and validation

    Directory of Open Access Journals (Sweden)

    H. Korhonen

    2004-01-01

    Full Text Available A size-segregated aerosol dynamics model UHMA (University of Helsinki Multicomponent Aerosol model was developed for studies of multicomponent tropospheric aerosol particles. The model includes major aerosol microphysical processes in the atmosphere with a focus on new particle formation and growth; thus it incorporates particle coagulation and multicomponent condensation, applying a revised treatment of condensation flux onto free molecular regime particles and the activation of nanosized clusters by organic vapours (Nano-Köhler theory, as well as recent parameterizations for binary H2SO4–H2O and ternary H2SO4–NH3-H2O homogeneous nucleation and dry deposition. The representation of particle size distribution can be chosen from three sectional methods: the hybrid method, the moving center method, and the retracking method in which moving sections are retracked to a fixed grid after a certain time interval. All these methods can treat particle emissions and transport consistently, and are therefore suitable for use in large scale atmospheric models. In a test simulation against an accurate high resolution solution, all the methods showed reasonable treatment of new particle formation with 20 size sections although the hybrid and the retracking methods suffered from artificial widening of the distribution. The moving center approach, on the other hand, showed extra dents in the particle size distribution and failed to predict the onset of detectable particle formation. In a separate test simulation of an observed nucleation event, the model captured the key qualitative behaviour of the system well. Furthermore, its prediction of the organic volume fraction in newly formed particles, suggesting values as high as 0.5 for 3–4 nm particles and approximately 0.8 for 10 nm particles, agrees with recent indirect composition measurements.

  13. Multicomponent aerosol dynamics model UHMA: model development and validation

    Science.gov (United States)

    Korhonen, H.; Lehtinen, K. E. J.; Kulmala, M.

    2004-05-01

    A size-segregated aerosol dynamics model UHMA (University of Helsinki Multicomponent Aerosol model) was developed for studies of multicomponent tropospheric aerosol particles. The model includes major aerosol microphysical processes in the atmosphere with a focus on new particle formation and growth; thus it incorporates particle coagulation and multicomponent condensation, applying a revised treatment of condensation flux onto free molecular regime particles and the activation of nanosized clusters by organic vapours (Nano-Köhler theory), as well as recent parameterizations for binary H2SO4-H2O and ternary H2SO4-NH3-H2O homogeneous nucleation and dry deposition. The representation of particle size distribution can be chosen from three sectional methods: the hybrid method, the moving center method, and the retracking method in which moving sections are retracked to a fixed grid after a certain time interval. All these methods can treat particle emissions and atmospheric transport consistently, and are therefore suitable for use in large scale atmospheric models. In a test simulation against an accurate high resolution solution, all the methods showed reasonable treatment of new particle formation with 20 size sections although the hybrid and the retracking methods suffered from artificial widening of the distribution. The moving center approach, on the other hand, showed extra dents in the particle size distribution and failed to predict the onset of detectable particle formation. In a separate test simulation of an observed nucleation event, the model captured the key qualitative behaviour of the system well. Furthermore, its prediction of the organic volume fraction in newly formed particles, suggesting values as high as 0.5 for 3-4 nm particles and approximately 0.8 for 10 nm particles, agrees with recent indirect composition measurements.

  14. Transformations among CE–CVM model parameters for multicomponent systems

    Indian Academy of Sciences (India)

    B Nageswara Sarma; Shrikant Lele

    2005-06-01

    In the development of thermodynamic databases for multicomponent systems using the cluster expansion–cluster variation methods, we need to have a consistent procedure for expressing the model parameters (CECs) of a higher order system in terms of those of the lower order subsystems and to an independent set of parameters which exclusively represent interactions of the higher order systems. Such a procedure is presented in detail in this communication. Furthermore, the details of transformations required to express the model parameters in one basis from those defined in another basis for the same system are also presented.

  15. Biosorption of Metals from Multi-Component Bacterial Solutions

    CERN Document Server

    Tsertsvadze, L A; Petriashvili, Sh G; Chutkerashvili, D G; Kirkesali, E I; Frontasyeva, M V; Pavlov, S S; Gundorina, S F

    2002-01-01

    The method of extraction of metals from industrial solutions by means of economical and easy to apply biosorbents in subtropics such as products of tea manufacturing, moss, microorganisms is described. The multi-component solutions obtained in the process of leaching of ores, rocks and industrial wastes by peat suspension were used in the experiments. The element composition of sorbent biomass and solutions was investigated by epithermal neutron activation analysis and by atomic absorption spectrometry. The results obtained evidence that the used biosorbents are applicable for extraction of the whole set of heavy metals and actinides (U, Th, Cu, Mn, Fe, Pb, Li, Rb, Sr, Cd, As, Co and others) from industrial solutions.

  16. Communication issues in a multicomponent study of semiconductor employees.

    Science.gov (United States)

    Saiki, C L; Green, R S; Gold, E B; Schenker, M B

    1995-12-01

    A variety of methods were used to address communication problems in the Semiconductor Health Study (SHS). The diverse employee population required investigators to consider language, ethnic, and cultural differences in planning and implementing the study design. Studies of reproductive health in the workplace raise special concerns, including the critical need to preserve confidentiality and privacy of subjects. Notification of results of epidemiological studies reporting workplace hazards requires sensitivity to needs of workers. SHS investigators directly communicated overall results of this multicomponent study to participating employees at all sites and notified subjects of results of individual industrial hygiene monitoring and endocrine hormone assays.

  17. Time-derivative preconditioning method for multicomponent flow

    Science.gov (United States)

    Housman, Jeffrey Allen

    A time-derivative preconditioned system of equations suitable for the numerical simulation of single component and multicomponent inviscid flows at all speeds is formulated. The system is shown to be hyperbolic in time and remain well-posed at low Mach numbers, allowing an efficient time marching solution strategy to be utilized from transonic to incompressible flow speeds. For multicomponent flow at low speed, a preconditioned nonconservative discretization scheme is described which preserves pressure and velocity equilibrium across fluid interfaces, handles sharp liquid/gas interfaces with large density ratios, while remaining well-conditioned for time marching methods. The method is then extended to transonic and supersonic flows using a hybrid conservative/nonconservative formulation which retains the pressure/velocity equilibrium property and converges to the correct weak solution when shocks are present. In order to apply the proposed model to complex flow applications, the overset grid methodology is used where the equations are transformed to a nonorthogonal curvilinear coordinate system and discretized on structured body-fitted curvilinear grids. The multicomponent model and its extension to homogeneous multiphase mixtures is discussed and the hyperbolicity of the governing equations is demonstrated. Low Mach number perturbation analysis is then performed on the system of equations and a local time-derivative preconditioning matrix is derived allowing time marching numerical methods to remain efficient at low speeds. Next, a particular time marching numerical method is presented along with three discretization schemes for the convective terms. These include a conservative preconditioned Roe type method, a nonconservative preconditioned Split Coefficient Matrix (SCM) method, and hybrid formulation which combines the conservative and nonconservative schemes using a simple switching function. A characteristic boundary treatment which includes time

  18. Nonrelativistic factorizable scattering theory of multicomponent Calogero-Sutherland model

    CERN Document Server

    Ahn, C; Nam, S; Ahn, Changrim; Lee, Kong Ju Bock; Nam, Soonkeon

    1995-01-01

    We relate two integrable models in (1+1) dimensions, namely, multicomponent Calogero-Sutherland model with particles and antiparticles interacting via the hyperbolic potential and the nonrelativistic factorizable S-matrix theory with SU(N)-invariance. We find complete solutions of the Yang-Baxter equations without implementing the crossing symmetry, and one of them is identified with the scattering amplitudes derived from the Schr\\"{o}dinger equation of the Calogero-Sutherland model. This particular solution is of interest in that it cannot be obtained as a nonrelativistic limit of any known relativistic solutions of the SU(N)-invariant Yang-Baxter equations.

  19. Instabilities in rapid solidification of multi-component alloys

    Science.gov (United States)

    Altieri, Anthony L.; Davis, Stephen H.

    2017-10-01

    Rapid solidification of multi-component liquids occurs in many modern applications such as additive manufacturing. In the present work the interface departures from equilibrium consist of the segregation coefficient and liquidus slope depending on front speed, the one-sided, frozen-temperature approximation, and the alloy behaving as the superposition of individual components. Linear-stability theory is applied, showing that the cellular and oscillatory instabilities of the binary case are modified. The addition of components tends to destabilize the interface while the addition of a single large-diffusivity material can entirely suppress the oscillatory mode. Multiple minima in the neutral curve for the cellular mode occur.

  20. Diffusion dominated evaporation in multicomponent lattice Boltzmann simulations

    Science.gov (United States)

    Hessling, Dennis; Xie, Qingguang; Harting, Jens

    2017-02-01

    We present a diffusion dominated evaporation model using the popular pseudopotential multicomponent lattice Boltzmann method introduced by Shan and Chen. With an analytical computation of the diffusion coefficients, we demonstrate that Fick's law is obeyed. We then validate the applicability of our model by demonstrating the agreement of the time evolution of the interface position of an evaporating planar film to the analytical prediction. Furthermore, we study the evaporation of a freely floating droplet and confirm that the effect of Laplace pressure is significant for predicting the time evolution of small droplet radii.

  1. Fluid description of multi-component solar partially ionized plasma

    CERN Document Server

    Khomenko, Elena; Diaz, Antonio; Vitas, Nikola

    2014-01-01

    We derive self-consistent formalism for the description of multi-component partially ionized solar plasma, by means of the coupled equations for the charged and neutral components for an arbitrary number of chemical species, and the radiation field. All approximations and assumptions are carefully considered. Generalized Ohm's law is derived for the single-fluid and two-fluid formalism. Our approach is analytical with some order-of-magnitude support calculations. After general equations are developed we particularize to some frequently considered cases as for the interaction of matter and radiation.

  2. Fluid description of multi-component solar partially ionized plasma

    Energy Technology Data Exchange (ETDEWEB)

    Khomenko, E., E-mail: khomenko@iac.es; Collados, M.; Vitas, N. [Instituto de Astrofísica de Canarias, 38205 La Laguna, Tenerife (Spain); Departamento de Astrofísica, Universidad de La Laguna, 38205 La Laguna, Tenerife (Spain); Díaz, A. [Departament de Física, Universitat de les Illes Balears, E-07122 Palma de Mallorca (Spain)

    2014-09-15

    We derive self-consistent formalism for the description of multi-component partially ionized solar plasma, by means of the coupled equations for the charged and neutral components for an arbitrary number of chemical species, and the radiation field. All approximations and assumptions are carefully considered. Generalized Ohm's law is derived for the single-fluid and two-fluid formalism. Our approach is analytical with some order-of-magnitude support calculations. After general equations are developed, we particularize to some frequently considered cases as for the interaction of matter and radiation.

  3. Efficiency in chemistry: from hydrogen autotransfer to multicomponent catalysis.

    Science.gov (United States)

    Alonso, Francisco; Foubelo, Francisco; González-Gómez, José C; Martínez, Ricardo; Ramón, Diego J; Riente, Paola; Yus, Miguel

    2010-08-01

    A hydrogen autotransfer reaction has been applied to the α-alkylation of ketones, with primary alcohols as the electrophilic component, either under homogeneous (using a Ru complex as catalyst) or under heterogeneous (using Ni nanoparticles) conditions. This process is both very efficient (concerning atom economy) and ecologically friendly (water as the only by-product generated). On the other hand, three multicomponent reactions, namely, the Strecker reaction (without any catalyst), the aza-Sakurai process (catalyzed by ferrite), and the addition of in situ generated Zn enolates to chiral sulfinylimines (catalyzed by Cu), have proven to be very efficient in the generation of a diversity of polyfunctionalized molecules.

  4. Prediction of release ratios of multicomponent pheromones from rubber septa.

    Science.gov (United States)

    Heath, R R; Teal, P E; Tumlinson, J H; Mengelkoch, L J

    1986-12-01

    A method has been developed to predict the release ratio of the components of blends of alcohols, acetates, and/or aldehydes from rubber septa. The calculations of predicted release ratios are based on the relative vapor pressures of the components. The relative vapor pressures of the compounds were calculated from their retention indices on a liquid crystal capillary gas chromatographie column. The correlation between the theoretically predicted and experimentally determined ratios was very good. Thus, formulations can be prepared that will release a desired ratio of the components of a multicomponent pheromone blend.

  5. Multicomponent fluid of hard spheres near a wall.

    Science.gov (United States)

    Malijevský, Alexandr; Yuste, Santos B; Santos, Andrés; López de Haro, Mariano

    2007-06-01

    The rational function approximation method, density functional theory, and NVT Monte Carlo simulation are used to obtain the density profiles of multicomponent hard-sphere mixtures near a planar hard wall. Binary mixtures with a size ratio 1:3 in which both components occupy a similar volume are specifically examined. The results indicate that the present version of density functional theory yields an excellent overall performance. A reasonably accurate behavior of the rational function approximation method is also observed, except in the vicinity of the first minimum, where it may even predict unphysical negative values.

  6. Local Axisymmetric Instability Criterion in the Thin, Rotating, Multicomponent Disk

    CERN Document Server

    Rafikov, R R

    2000-01-01

    Purely gravitational perturbations are considered in a thin rotating disk composed of several gas and stellar components. The dispersion relation for the axisymmetric density waves propagating through the disk is found and the criterion for the local axisymmetric stability of the whole system is formulated. In the appropriate limit of two-component gas we confirm the findings of Jog & Solomon (1984) and extend consideration to the case when one component is collisionless. Gravitational stability of the Galactic disk in the Solar neighborhood based on the multicomponent instability condition is explored using recent measurements of the stellar composition and kinematics in the local Galactic disk obtained by Hipparcos satellite.

  7. Nucleation and growth of a multicomponent metallic glass@

    Indian Academy of Sciences (India)

    Arun Pratap; K G Raval; Ajay Gupta; S K Kulkarni

    2000-06-01

    The metallic glass samples of Fe67Co18B14Si1 (2605CO), prepared by the melt spinning technique were procured from the Allied Corporation. The kinetics of crystallization of this multicomponent glassy alloy is studied using differential scanning calorimetry (DSC). The crystallization data have been examined in terms of modified Kissinger and Matusita equations for the non-isothermal crystallization. The results show enhanced bulk nucleation in general. At high heating rates added to it is surface induced abnormal grain growth resulting in fractal dimensionality.

  8. The discovery of new isocyanide-based multi-component reactions

    NARCIS (Netherlands)

    Dömling, Alexander

    2000-01-01

    Multi-component reactions are finding increasing use in the discovery process of new drugs and agrochemicals. Some years ago they were considered as highly exotic types of organic reactions. Recently, many groups have realized that the field of multi-component reactions is full of new opportunities.

  9. Catalysis of Cascade and Multicomponent Reactions of Carbonyl Compounds and CH Acids by Electricity.

    Science.gov (United States)

    Elinson, Michail N; Vereshchagin, Anatoly N; Ryzhkov, Fedor V

    2016-08-01

    This review is concerned with modern trends in the use of electrochemically induced chain reactions in cascade and multicomponent electroorganic synthesis. The review summarizes the data on the use of electrochemically induced chain reactions in cascade and multicomponent organic synthesis, which were published mainly in the last decade.

  10. A mathematical model for the dissolution of stoichiometric particles in multi-component alloys

    NARCIS (Netherlands)

    Vermolen, F.J.; Vuik, C.; Van der Zwaag, S.

    2001-01-01

    A general model for the dissolution of stoichiometric particles in multi-component alloys is proposed and analysed. We introduce the concept of mass-conserving solutions and give a self-similar solution for the resulting Stefan-problem. Furthermore, we show that particle dissolution in multi-compone

  11. Feature-Based TAG in place of multi-component adjunction Computational Implications

    CERN Document Server

    Hockey, B A

    1994-01-01

    Using feature-based Tree Adjoining Grammar (TAG), this paper presents linguistically motivated analyses of constructions claimed to require multi-component adjunction. These feature-based TAG analyses permit parsing of these constructions using an existing unification-based Earley-style TAG parser, thus obviating the need for a multi-component TAG parser without sacrificing linguistic coverage for English.

  12. Mesoscopic structure prediction of nanoparticle assembly and coassembly: Theoretical foundation

    KAUST Repository

    Hur, Kahyun

    2010-01-01

    In this work, we present a theoretical framework that unifies polymer field theory and density functional theory in order to efficiently predict ordered nanostructure formation of systems having considerable complexity in terms of molecular structures and interactions. We validate our approach by comparing its predictions with previous simulation results for model systems. We illustrate the flexibility of our approach by applying it to hybrid systems composed of block copolymers and ligand coated nanoparticles. We expect that our approach will enable the treatment of multicomponent self-assembly with a level of molecular complexity that approaches experimental systems. © 2010 American Institute of Physics.

  13. Protein-Protein Interaction and Pathway Analyses of Top Schizophrenia Genes Reveal Schizophrenia Susceptibility Genes Converge on Common Molecular Networks and Enrichment of Nucleosome (Chromatin) Assembly Genes in Schizophrenia Susceptibility Loci

    OpenAIRE

    Luo, Xiongjian; Huang, Liang; Jia, Peilin; Li, Ming; SU, Bing; Zhao, Zhongming; Gan, Lin

    2013-01-01

    Recent genome-wide association studies have identified many promising schizophrenia candidate genes and demonstrated that common polygenic variation contributes to schizophrenia risk. However, whether these genes represent perturbations to a common but limited set of underlying molecular processes (pathways) that modulate risk to schizophrenia remains elusive, and it is not known whether these genes converge on common biological pathways (networks) or represent different pathways. In addition...

  14. Microreactor Technology as an Efficient Tool for Multicomponent Reactions

    Science.gov (United States)

    Cukalovic, Ana; Monbaliu, Jean-Christophe M. R.; Stevens, Christian V.

    Multicomponent reactions are an important tool in organic synthesis as they often allow the circumvention of multistep procedures by combining three or more molecules into one structure in a single step. An additional asset of the approach is the significant increase of the combinatorial possibilities, since a modification of the final product is easily accomplished by implementing minor changes in the reaction setup; this obviously allows considerable savings in time and resources. These advantages are of particular interest in pharmaceutical research for the construction of libraries. In order to increase the sustainability of chemical processes, the field is intensively explored, and novel reactions are frequently reported. Microreactor technology also offers a contemporary way of conducting chemical reactions in a more sustainable fashion due to the miniaturization and increased safety, and also in a technically improved manner due to intensified process efficiency. This relatively new technology is implemented in novel and improved applications and is getting more and more used in chemical research. The combination of the benefits from the two approaches clearly presents an attractive reaction design, and this chapter presents an overview of the reported examples in which the microreactor technology and the multicomponent approach are combined, usually with dramatically improved results compared to those previously reported.

  15. Isentropic Compression of Multicomponent Mixtures of Fuels and Inert Gases

    Science.gov (United States)

    Barragan, Michelle; Julien, Howard L.; Woods, Stephen S.; Wilson, D. Bruce; Saulsberry, Regor L.

    2000-01-01

    In selected aerospace applications of the fuels hydrazine and monomethythydrazine, there occur conditions which can result in the isentropic compression of a multicomponent mixture of fuel and inert gas. One such example is when a driver gas such as helium comes out of solution and mixes with the fuel vapor, which is being compressed. A second example is when product gas from an energetic device mixes with the fuel vapor which is being compressed. Thermodynamic analysis has shown that under isentropic compression, the fuels hydrazine and monomethylhydrazine must be treated as real fluids using appropriate equations of state. The appropriate equations of state are the Peng-Robinson equation of state for hydrazine and the Redlich-Kwong-Soave equation of state for monomethylhydrazine. The addition of an inert gas of variable quantity and input temperature and pressure to the fuel compounds the problem for safety design or analysis. This work provides the appropriate thermodynamic analysis of isentropic compression of the two examples cited. In addition to an entropy balance describing the change of state, an enthalpy balance is required. The presence of multicomponents in the system requires that appropriate mixing rules are identified and applied to the analysis. This analysis is not currently available.

  16. Multicomponent, Rare-Earth-Doped Thermal-Barrier Coatings

    Science.gov (United States)

    Miller, Robert A.; Zhu, Dongming

    2005-01-01

    Multicomponent, rare-earth-doped, perovskite-type thermal-barrier coating materials have been developed in an effort to obtain lower thermal conductivity, greater phase stability, and greater high-temperature capability, relative to those of the prior thermal-barrier coating material of choice, which is yttria-partially stabilized zirconia. As used here, "thermal-barrier coatings" (TBCs) denotes thin ceramic layers used to insulate air-cooled metallic components of heat engines (e.g., gas turbines) from hot gases. These layers are generally fabricated by plasma spraying or physical vapor deposition of the TBC materials onto the metal components. A TBC as deposited has some porosity, which is desirable in that it reduces the thermal conductivity below the intrinsic thermal conductivity of the fully dense form of the material. Undesirably, the thermal conductivity gradually increases because the porosity gradually decreases as a consequence of sintering during high-temperature service. Because of these and other considerations such as phase transformations, the maximum allowable service temperature for yttria-partially stabilized zirconia TBCs lies in the range of about 1,200 to 1,300 C. In contrast, the present multicomponent, rare-earth-doped, perovskite-type TBCs can withstand higher temperatures.

  17. Smoking cessation after 12 months with multi-component therapy.

    Science.gov (United States)

    Raich, Antònia; Martínez-Sánchez, Jose Maria; Marquilles, Emili; Rubio, Lídia; Fu, Marcela; Fernández, Esteve

    2015-03-01

    Smoking is one of the most important causes of morbidity and mortality in developed countries. One of the priorities of public health programmes is the reduction of its prevalence, which would involve millions of people quitting smoking, but cessation programs often have modest results, especially within certain population groups. The aim of this study was to analyze the variables determining the success of a multicomponent therapy programme for smoking cessation. We conducted the study in the Smoking Addiction Unit at the Hospital of Manresa, with 314 patients (91.4% of whom had medium or high-level dependency). We observed that higher educational level, not living with a smoker, following a multimodal programme or smoking cessation with psychological therapy, and pharmacological treatment are relevant factors for quitting smoking. Abstinence rates are not associated with other factors, such as sex, age, smoking behaviour characteristics or psychiatric history. The combination of pharmacological and psychological treatment increased success rates in multicomponent therapy. Psychological therapy only also obtained positive results, though somewhat more modest.

  18. Gravitational Effects on Multi-component Droplet Evaporation

    Science.gov (United States)

    Habchi, Chawki; Ebrahimian, Vahid

    2012-06-01

    This paper focuses on the analysis of multi-component droplet heating and evaporation under microgravity and normal gravity conditions. This analysis is based on the conventional conservation equations of species and energy for the gas phase, and the energy balance equation at the liquid-gas interface. The species diffusion is based on the Hirschfelder law, rather than on the less general Fick's equation. Moreover, the heat flux due to species diffusion is taken into account in addition to the classical conduction heat flux between the gas and the liquid droplets. The liquid phase analysis is based on the infinite thermal conductivity liquid phase model, which has been justified by a reasonably good agreement between the predicted and experimental results. Indeed, the developed evaporation model has been validated against experimental data reported by Chauveau et al. (2008), where the droplets evaporation has been observed in microgravity and normal gravity conditions. The effects of gravity have been taken into account by introducing the Grashof number in the expressions of the Sherwood and Nusselt numbers. This model has been implemented in the multidimensional IFP-C3D industrial software. The modeling and experimental results have been shown to be reasonably close and the gravitational effects have been revealed to be significant especially for multi-component liquids including heavy components.

  19. Issues of structure formation of multi-component construction materials

    Directory of Open Access Journals (Sweden)

    Sidorenko Yulia

    2017-01-01

    Full Text Available Growing volumes of construction result in the rising demand for high-quality wall materials and products, growing relevance of availability of resource and raw-material base of natural and industrial products for the construction industry. Structural, physical and mechanical qualities of these products can be improved through systematical selection of compositions based on natural and raw materials, including nano-scale products. The goal of this paper is to provide rationale for structure formation mechanisms of multicomponent materials (silica-lime, silicate, cement materials, with the possibility of using nano-scale products in their production. The primary mechanism of directed structure formation at the interface boundaries of binders are nano- and ultra-disperse particles with high absorption and adhesion properties, which are primarily intended to strengthen the contact area (one of the key structural units of multicomponent binders. The knowledge of genesis, chemical, mineralogical, and phase compositions, as well as specific features of formation of nano-technological raw materials, enables optimization of construction product properties. Using the small-angle neutron scattering method, we identified granulometric and surface properties of a series of nano-technological products (binary and sludge and materials where such products are used, which enabled us to design optimal mixture compositions and parameters of pressing operations.

  20. New Matrix Lie Algebra, a Powerful Tool for Constructing Multi-component C-KdV Equation Hierarchy

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    A set of new multi-component matrix Lie algebra is constructed, which is devoted to obtaining a new loop algebra A-2M. It follows that an isospectral problem is established. By making use of Tu scheme, a Liouville integrable multi-component hierarchy of soliton equations is generated, which possesses the multi-component Hamiltonian structures. As its reduction cases, the multi-component C-KdV hierarchy is given. Finally, the multi-component integrable coupling system of C-KdV hierarchy is presented through enlarging matrix spectral problem.

  1. Evaluation of multicomponent recombinant vaccines against Actinobacillus pleuropneumoniae in mice

    Directory of Open Access Journals (Sweden)

    Shao Meili

    2010-09-01

    Full Text Available Abstract Background Porcine contagious pleuropneumonia (PCP is a highly contagious disease that is caused by Actinobacillus pleuropneumoniae (APP and characterized by severe fibrinous necrotizing hemorrhagic pleuropneumonia, which is a severe threat to the swine industry. In addition to APP RTX-toxins I (ApxI, APP RTX-toxin II (ApxII, APP RTX-toxin III (ApxIII and Outer membrane protein (OMP, there may be other useful antigens that can contribute to protection. In the development of an efficacious vaccine against APP, the immunogenicities of multicomponent recombinant subunit vaccines were evaluated. Methods Six major virulent factor genes of APP, i.e., apxI, apxII, apxIII, APP RTX-toxins IV (apxIV, omp and type 4 fimbrial structural (apfa were expressed. BALB/c mice were immunized with recombinant ApxI ( rApxI, recombinant ApxII (rApxII, recombinant ApxIII (rApxIII and recombinant OMP (rOMP (Group I; rApxI, rApxII, rApxIII, recombinant ApxIV (rApxIV, recombinant Apfa (rApfa and rOMP (Group II; APP serotype 1 (APP1 inactivated vaccine (Group III; or phosphate-buffered saline (PBS (Control group, respectively. After the first immunization, mice were subjected to two booster immunizations at 2-week intervals, followed by challenge with APP1 Shope 4074 and APP2 S1536. Results The efficacy of the multicomponent recombinant subunit vaccines was evaluated on the basis of antibody titers, survival rates, lung lesions and indirect immunofluorescence (IIF detection of APP. The antibody level of Group I was significantly higher than those of the other three groups (P P P Conclusion The result indicates that the multicomponent recombinant subunit vaccine composed of rApxI, rApxII, rApxIII and rOMP can provide effective cross-protection against homologous and heterologous APP challenge.

  2. Mapping Chemical Selection Pathways for Designing Multicomponent Alloys: an informatics framework for materials design

    OpenAIRE

    Srikant Srinivasan; BRODERICK, Scott R.; Ruifeng Zhang; Amrita Mishra; Sinnott, Susan B.; Saxena, Surendra K.; James M. LeBeau; Krishna Rajan

    2015-01-01

    A data driven methodology is developed for tracking the collective influence of the multiple attributes of alloying elements on both thermodynamic and mechanical properties of metal alloys. Cobalt-based superalloys are used as a template to demonstrate the approach. By mapping the high dimensional nature of the systematics of elemental data embedded in the periodic table into the form of a network graph, one can guide targeted first principles calculations that identify the influence of speci...

  3. Mapping Chemical Selection Pathways for Designing Multicomponent Alloys: an informatics framework for materials design.

    Science.gov (United States)

    Srinivasan, Srikant; Broderick, Scott R; Zhang, Ruifeng; Mishra, Amrita; Sinnott, Susan B; Saxena, Surendra K; LeBeau, James M; Rajan, Krishna

    2015-12-18

    A data driven methodology is developed for tracking the collective influence of the multiple attributes of alloying elements on both thermodynamic and mechanical properties of metal alloys. Cobalt-based superalloys are used as a template to demonstrate the approach. By mapping the high dimensional nature of the systematics of elemental data embedded in the periodic table into the form of a network graph, one can guide targeted first principles calculations that identify the influence of specific elements on phase stability, crystal structure and elastic properties. This provides a fundamentally new means to rapidly identify new stable alloy chemistries with enhanced high temperature properties. The resulting visualization scheme exhibits the grouping and proximity of elements based on their impact on the properties of intermetallic alloys. Unlike the periodic table however, the distance between neighboring elements uncovers relationships in a complex high dimensional information space that would not have been easily seen otherwise. The predictions of the methodology are found to be consistent with reported experimental and theoretical studies. The informatics based methodology presented in this study can be generalized to a framework for data analysis and knowledge discovery that can be applied to many material systems and recreated for different design objectives.

  4. Mapping Chemical Selection Pathways for Designing Multicomponent Alloys: an informatics framework for materials design

    Science.gov (United States)

    Srinivasan, Srikant; Broderick, Scott R.; Zhang, Ruifeng; Mishra, Amrita; Sinnott, Susan B.; Saxena, Surendra K.; Lebeau, James M.; Rajan, Krishna

    2015-12-01

    A data driven methodology is developed for tracking the collective influence of the multiple attributes of alloying elements on both thermodynamic and mechanical properties of metal alloys. Cobalt-based superalloys are used as a template to demonstrate the approach. By mapping the high dimensional nature of the systematics of elemental data embedded in the periodic table into the form of a network graph, one can guide targeted first principles calculations that identify the influence of specific elements on phase stability, crystal structure and elastic properties. This provides a fundamentally new means to rapidly identify new stable alloy chemistries with enhanced high temperature properties. The resulting visualization scheme exhibits the grouping and proximity of elements based on their impact on the properties of intermetallic alloys. Unlike the periodic table however, the distance between neighboring elements uncovers relationships in a complex high dimensional information space that would not have been easily seen otherwise. The predictions of the methodology are found to be consistent with reported experimental and theoretical studies. The informatics based methodology presented in this study can be generalized to a framework for data analysis and knowledge discovery that can be applied to many material systems and recreated for different design objectives.

  5. Cascade multicomponent synthesis of indoles, pyrazoles, and pyridazinones by functionalization of alkenes.

    Science.gov (United States)

    Matcha, Kiran; Antonchick, Andrey P

    2014-10-27

    The development of multicomponent reactions for indole synthesis is demanding and has hardly been explored. The present study describes the development of a novel multicomponent, cascade approach for indole synthesis. Various substituted indole derivatives were obtained from simple reagents, such as unfunctionalized alkenes, diazonium salts, and sodium triflinate, by using an established straightforward and regioselective method. The method is based on the radical trifluoromethylation of alkenes as an entry into Fischer indole synthesis. Besides indole synthesis, the application of the multicomponent cascade reaction to the synthesis of pyrazoles and pyridazinones is described. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  6. Multi-component Erlang distribution of plant seed masses and sizes

    Science.gov (United States)

    Fan, San-Hong; Wei, Hua-Rong

    2012-12-01

    The mass and the size distributions of plant seeds are very similar to the multi-component Erlang distribution of final-state particle multiplicities in high-energy collisions. We study the mass, length, width, and thickness distributions of pumpkin and marrow squash seeds in this paper. The corresponding distribution curves are obtained and fitted by using the multi-component Erlang distribution. In the comparison, the method of χ2-testing is used. The mass and the size distributions of the mentioned seeds are shown to obey approximately the multi-component Erlang distribution with the component number being 1.

  7. Multi-component Dark Matter through a Radiative Higgs Portal

    CERN Document Server

    DiFranzo, Anthony

    2016-01-01

    We study a multi-component dark matter model where interactions with the Standard Model are primarily via the Higgs boson. The model contains vector-like fermions charged under $SU(2)_W \\times U(1)_Y$ and under the dark gauge group, $U(1)^\\prime$. This results in two dark matter candidates. A spin-1 and a spin-1/2 candidate, which have loop and tree-level couplings to the Higgs, respectively. We explore the resulting effect on the dark matter relic abundance, while also evaluating constraints on the Higgs invisible width and from direct detection experiments. Generally, we find that this model is highly constrained when the fermionic candidate is the predominant fraction of the dark matter relic abundance.

  8. Closure conditions for non-equilibrium multi-component models

    Science.gov (United States)

    Müller, S.; Hantke, M.; Richter, P.

    2016-07-01

    A class of non-equilibrium models for compressible multi-component fluids in multi-dimensions is investigated taking into account viscosity and heat conduction. These models are subject to the choice of interfacial pressures and interfacial velocity as well as relaxation terms for velocity, pressure, temperature and chemical potentials. Sufficient conditions are derived for these quantities that ensure meaningful physical properties such as a non-negative entropy production, thermodynamical stability, Galilean invariance and mathematical properties such as hyperbolicity, subcharacteristic property and existence of an entropy-entropy flux pair. For the relaxation of chemical potentials, a two-component and a three-component models for vapor-water and gas-water-vapor, respectively, are considered.

  9. Cosmic Ray Excesses from Multi-component Dark Matter Decays

    CERN Document Server

    Geng, Chao-Qiang; Tsai, Lu-Hsing

    2014-01-01

    We use multi-component decaying dark matter (DM) scenario to explain the possible cosmic ray excesses in the positron fraction recently confirmed by AMS-02 and the total $e^+ +e^-$ flux observed by Fermi-LAT. In the two-component DM models, we find an interesting variation of the flavor structure along with the cutoff of the heavy DM. For the three-component DM case, we focus on a particular parameter range in which the best fits prefer to open only 2 DM decay channels with a third DM contributing nothing to the electron and positron spectra. We show that all models give the reasonable fits to both the AMS-02 positron fraction and the Fermi-LAT total $e^++e^-$ flux, which are also consistent with the measured diffuse $\\gamma$-ray flux by Fermi-LAT.

  10. Degree of molecular self-sorting in multicomponent systems.

    Science.gov (United States)

    Saha, Manik Lal; Schmittel, Michael

    2012-06-28

    Self-sorting represents the spontaneous and high fidelity self and/or non-self-recognition of two or more related components within a complex mixture. While the effective management of self-sorting principles perceptibly requires some key expertise in molecular programming, at a higher stage of operation it is of supreme interest to guide the process to increasingly higher degrees of self-sorting. In this article, we present the emerging principles of how to guide several components toward formation of self-sorted multicomponent architectures. To provide further guidance in denominating such systems, we suggest to utilise a systematic classification as well as a formula to evaluate their degree of self-sorting (M).

  11. Water activity changes of multicomponent food mixture during processing

    Directory of Open Access Journals (Sweden)

    Jiří Štencl

    2004-01-01

    Full Text Available Water activity of multicomponent food mixture was analysed and measured. Samples of dry fermented sausages with two different starter cultures (Pediococcus pentosaceus + Staphylococcus carnosus and Staphylococcus carnosus + Staphylococcus xylosus + Lactobacillus farciminis were tested during ripening (21 days and storing (91 days. The basic raw materials were the same for all samples: lean beef meat, lean pork and pork fat in equal parts, nitrite salt mixture (2.5 %, and sugars (1.0 %. The method used for water activity tests was indirect manometric in a static environment. Moisture content of samples was measured using halogen dryer. The course of water activity and moisture content of sausages was variable during ripening and steady during storage. Diagrams showed gradual decrease of both parameters. Mathematical models of water activity and moisture content for storage of dry fermented sausages were developed and statistically verified. The influence of starter cultures was not significant.

  12. Temperature extrapolation of multicomponent grand canonical free energy landscapes

    Science.gov (United States)

    Mahynski, Nathan A.; Errington, Jeffrey R.; Shen, Vincent K.

    2017-08-01

    We derive a method for extrapolating the grand canonical free energy landscape of a multicomponent fluid system from one temperature to another. Previously, we introduced this statistical mechanical framework for the case where kinetic energy contributions to the classical partition function were neglected for simplicity [N. A. Mahynski et al., J. Chem. Phys. 146, 074101 (2017)]. Here, we generalize the derivation to admit these contributions in order to explicitly illustrate the differences that result. Specifically, we show how factoring out kinetic energy effects a priori, in order to consider only the configurational partition function, leads to simpler mathematical expressions that tend to produce more accurate extrapolations than when these effects are included. We demonstrate this by comparing and contrasting these two approaches for the simple cases of an ideal gas and a non-ideal, square-well fluid.

  13. Isocyanide-Based Multicomponent Reactions for the Synthesis of Heterocycles

    Directory of Open Access Journals (Sweden)

    András Váradi

    2015-12-01

    Full Text Available Multicomponent reactions (MCRs are extremely popular owing to their facile execution, high atom-efficiency and the high diversity of products. MCRs can be used to access various heterocycles and highly functionalized scaffolds, and thus have been invaluable tools in total synthesis, drug discovery and bioconjugation. Traditional isocyanide-based MCRs utilize an external nucleophile attacking the reactive nitrilium ion, the key intermediate formed in the reaction of the imine and the isocyanide. However, when reactants with multiple nucleophilic groups (bisfunctional reactants are used in the MCR, the nitrilium intermediate can be trapped by an intramolecular nucleophilic attack to form various heterocycles. The implications of nitrilium trapping along with widely applied conventional isocyanide-based MCRs in drug design are discussed in this review.

  14. Multicomponent Consideration of Electron Fraction of ECR Source Plasma

    CERN Document Server

    Shirkov, G D

    1999-01-01

    The development of physical model and mathematical simulation methods of electron and ion accumulation and production in the ECR ion source is presented. New equations represent electrons in the ECR plasma as a multicomponent media. In the result any kind of experimental or analytical electron distribution function can be approximated with a series of Maxwellian distributions with different temperatures and partial weights. Main positive plasma potential is introduced into consideration in addition to the negative potential dip for highly charged ion confinement. This potential regulates the loss rate of primary cold electrons from the plasma volume and completes the total picture of ECR plasma behavior. The first test of new model and code with recent experimental data of RIKEN 18 GHz ECR source has shown some new opportunities for investigators to study the ECR ion sources.

  15. Isocyanide-Based Multicomponent Reactions for the Synthesis of Heterocycles.

    Science.gov (United States)

    Váradi, András; Palmer, Travis C; Notis Dardashti, Rebecca; Majumdar, Susruta

    2015-12-23

    Multicomponent reactions (MCRs) are extremely popular owing to their facile execution, high atom-efficiency and the high diversity of products. MCRs can be used to access various heterocycles and highly functionalized scaffolds, and thus have been invaluable tools in total synthesis, drug discovery and bioconjugation. Traditional isocyanide-based MCRs utilize an external nucleophile attacking the reactive nitrilium ion, the key intermediate formed in the reaction of the imine and the isocyanide. However, when reactants with multiple nucleophilic groups (bisfunctional reactants) are used in the MCR, the nitrilium intermediate can be trapped by an intramolecular nucleophilic attack to form various heterocycles. The implications of nitrilium trapping along with widely applied conventional isocyanide-based MCRs in drug design are discussed in this review.

  16. Multi-component, rigidly rotating polytropes: improved and extended theory

    CERN Document Server

    Caimmi, R

    2016-01-01

    With respect to earlier investigations, the theory of multi-component, concentric, copolar, axisymmetric, rigidly rotating polytropes is improved and extended, including subsystems with nonzero density on the boundary and subsystems with intersecting boundaries. The formulation is restricted to two subsystems for simplicity but, in principle, can be extended to $N$ subsystems. Equilibrium configurations are independent of the nature of the fluid i.e. collisional or collisionless, provided the polytropic index lies within the range, $1/2\\le n\\le5$, as in one-component systems. The solution of the equilibrium equations is expanded in power series, which can be continued up to the boundary and outside via starting points placed at increasingly larger distance from the centre of mass. A detailed analysis is devoted to special cases where the solution of the equilibrium equations can be expressed analytically. Finally a guidance example is shown, involving homogeneous subsystems with intersecting boundaries, where...

  17. A multi-component evaporation model for beam melting processes

    Science.gov (United States)

    Klassen, Alexander; Forster, Vera E.; Körner, Carolin

    2017-02-01

    In additive manufacturing using laser or electron beam melting technologies, evaporation losses and changes in chemical composition are known issues when processing alloys with volatile elements. In this paper, a recently described numerical model based on a two-dimensional free surface lattice Boltzmann method is further developed to incorporate the effects of multi-component evaporation. The model takes into account the local melt pool composition during heating and fusion of metal powder. For validation, the titanium alloy Ti-6Al-4V is melted by selective electron beam melting and analysed using mass loss measurements and high-resolution microprobe imaging. Numerically determined evaporation losses and spatial distributions of aluminium compare well with experimental data. Predictions of the melt pool formation in bulk samples provide insight into the competition between the loss of volatile alloying elements from the irradiated surface and their advective redistribution within the molten region.

  18. Multicomponent fluid of nonadditive hard spheres near a wall.

    Science.gov (United States)

    Fantoni, Riccardo; Santos, Andrés

    2013-04-01

    A recently proposed rational-function approximation [Phys. Rev. E 84, 041201 (2011)] for the structural properties of nonadditive hard spheres is applied to evaluate analytically (in Laplace space) the local density profiles of multicomponent nonadditive hard-sphere mixtures near a planar nonadditive hard wall. The theory is assessed by comparison with NVT Monte Carlo simulations of binary mixtures with a size ratio 1:3 in three possible scenarios: a mixture with either positive or negative nonadditivity near an additive wall, an additive mixture with a nonadditive wall, and a nonadditive mixture with a nonadditive wall. It is observed that, while the theory tends to underestimate the local densities at contact (especially in the case of the big spheres) it captures very well the initial decay of the densities with increasing separation from the wall and the subsequent oscillations.

  19. Synthesis of Multi-component Mass-exchange Networks

    Institute of Scientific and Technical Information of China (English)

    LIU Linlin; DU Jian; Mahmoud M.El-Halwagi; José María Ponce-Ortega; YAO Pingjing

    2013-01-01

    This paper presents a superstructure-based formulation for the synthesis of mass-exchange networks (MENs) considering multiple components.The superstructure is simplified by directly using the mass separation agents (MSA) from their sources,and therefore the automatic synthesis of the multi-component system involved in the MENs can be achieved without choosing a ‘key-component' either for the whole process or the mass exchangers.A mathematical model is proposed to carry out the optimization process.The concentrations,flow rates,matches and unit operation displayed in the obtained network constitute the exact representation of the mass exchange process in terms of all species in the system.An example is used to illustrate and demonstrate the application of the proposed method.

  20. Multicomponent seismic forward modeling of gas hydrates beneath the seafloor

    Institute of Scientific and Technical Information of China (English)

    Yang Jia-Jia; He Bing-Shou; Zhang Jian-Zhong

    2014-01-01

    We investigated the effect of microscopic distribution modes of hydrates in porous sediments, and the saturation of hydrates and free gas on the elastic properties of saturated sediments. We simulated the propagation of seismic waves in gas hydrate-bearing sediments beneath the seafloor, and obtained the common receiver gathers of compressional waves (P-waves) and shear waves (S-waves). The numerical results suggest that the interface between sediments containing gas hydrates and free gas produces a large-amplitude bottom-simulating reflector. The analysis of multicomponent common receiver data suggests that ocean-bottom seismometers receive the converted waves of upgoing P-and S-waves, which increases the complexity of the wavefield record.

  1. Quantum error correction against photon loss using multicomponent cat states

    Science.gov (United States)

    Bergmann, Marcel; van Loock, Peter

    2016-10-01

    We analyze a generalized quantum error-correction code against photon loss where a logical qubit is encoded into a subspace of a single oscillator mode that is spanned by distinct multicomponent cat states (coherent-state superpositions). We present a systematic code construction that includes the extension of an existing one-photon-loss code to higher numbers of losses. When subject to a photon loss (amplitude damping) channel, the encoded qubits are shown to exhibit a cyclic behavior where the code and error spaces each correspond to certain multiples of losses, half of which can be corrected. As another generalization we also discuss how to protect logical qudits against photon losses, and as an application we consider a one-way quantum communication scheme in which the encoded qubits are periodically recovered while the coherent-state amplitudes are restored as well at regular intervals.

  2. Multi-component intermetallic electrodes for lithium batteries

    Science.gov (United States)

    Thackeray, Michael M; Trahey, Lynn; Vaughey, John T

    2015-03-10

    Multi-component intermetallic negative electrodes prepared by electrochemical deposition for non-aqueous lithium cells and batteries are disclosed. More specifically, the invention relates to composite intermetallic electrodes comprising two or more compounds containing metallic or metaloid elements, at least one element of which can react with lithium to form binary, ternary, quaternary or higher order compounds, these compounds being in combination with one or more other metals that are essentially inactive toward lithium and act predominantly, but not necessarily exclusively, to the electronic conductivity of, and as current collection agent for, the electrode. The invention relates more specifically to negative electrode materials that provide an operating potential between 0.05 and 2.0 V vs. metallic lithium.

  3. Multi-component dark matter through a radiative Higgs portal

    Science.gov (United States)

    DiFranzo, Anthony; Mohlabeng, Gopolang

    2017-01-01

    We study a multi-component dark matter model where interactions with the Standard Model are primarily via the Higgs boson. The model contains vector-like fermions charged under SU(2) W × U(1) Y and under the dark gauge group, U(1)'. This results in two dark matter candidates. A spin-1 and a spin- 1/2 candidate, which have loop and tree-level couplings to the Higgs, respectively. We explore the resulting effect on the dark matter relic abundance, while also evaluating constraints on the Higgs invisible width and from direct detection experiments. Generally, we find that this model is highly constrained when the fermionic candidate is the predominant fraction of the dark matter relic abundance.

  4. Dissolution of multicomponent bubbles. [gases in glass melts

    Science.gov (United States)

    Weinberg, M. C.; Subramanian, R. S.

    1980-01-01

    The behavior of an isolated, stationary, multicomponent gas bubble in a glassmelt containing several dissolved gases is considered. The relevant mass-transport equations are formulated and calculations are performed for the case of two diffusing gases using a quasi-stationary model and a numerical solution of the exact mass-transfer equations. The results obtained from these two approaches are compared. The factors which govern the dissolution or growth of a bubble are thermodynamic and kinetic in origin. The tendency of a bubble to grow or shrink at long times is controlled by departure from overall equilibrium, whereas the short-time bubble dynamics may be dominated by kinetic effects. As a result of the existence of these dual influences, maxima and/or minima occur in the functional dependence of the bubble radius on time.

  5. Patient adherence to multi-component continuing care discharge plans.

    Science.gov (United States)

    Proctor, Steven L; Wainwright, Jaclyn L; Herschman, Philip L

    2017-09-01

    Intuitively, it is assumed that greater patient adherence to treatment recommendations in substance use disorder (SUD) treatment is associated with favorable outcomes, but surprisingly, there is limited research systematically examining the adherence-outcome relationship in the context of the continuing care phase post-discharge from residential treatment. This study sought to determine the effect of adherence to multi-component continuing care plans on long-term outcomes among patients following the primary treatment episode. Data were abstracted from electronic medical records for 271 patients (59.0% male) discharged from a U.S. residential program between 2013 and 2015. Patients were categorized based on their level of adherence to their individualized continuing care discharge plan, and studied through retrospective record review for 12months post-discharge. 12-month outcomes included past 30-day and continuous abstinence, re-admission, and quality of life. With the exception of re-admission rate, fully adherent patients demonstrated significantly better results on all study outcomes at 12months compared to patients who were partially or non-adherent. Fully adherent patients were 9.46 times (95% CI: 5.07-17.62) more likely to be continuously abstinent through 12months relative to the other adherence groups. Fully adherent patients were 7.53 times (95% CI: 2.41-23.50) more likely to report a positive quality of life at 12months relative to the other adherence groups. The findings support the widely held contention that greater adherence to continuing care discharge plans is associated with favorable long-term outcomes, and provide insight into realistic outcomes expectations for patients who are adherent to their multi-component continuing care discharge plans. Copyright © 2017 Elsevier Inc. All rights reserved.

  6. Wavelet-based multicomponent matching pursuit trace interpolation

    Science.gov (United States)

    Choi, Jihun; Byun, Joongmoo; Seol, Soon Jee; Kim, Young

    2016-09-01

    Typically, seismic data are sparsely and irregularly sampled due to limitations in the survey environment and these cause problems for key seismic processing steps such as surface-related multiple elimination or wave-equation-based migration. Various interpolation techniques have been developed to alleviate the problems caused by sparse and irregular sampling. Among many interpolation techniques, matching pursuit interpolation is a robust tool to interpolate the regularly sampled data with large receiver separation such as crossline data in marine seismic acquisition when both pressure and particle velocity data are used. Multicomponent matching pursuit methods generally used the sinusoidal basis function, which have shown to be effective for interpolating multicomponent marine seismic data in the crossline direction. In this paper, we report the use of wavelet basis functions which further enhances the performance of matching pursuit methods for de-aliasing than sinusoidal basis functions. We also found that the range of the peak wavenumber of the wavelet is critical to the stability of the interpolation results and the de-aliasing performance and that the range should be determined based on Nyquist criteria. In addition, we reduced the computational cost by adopting the inner product of the wavelet and the input data to find the parameters of the wavelet basis function instead of using L-2 norm minimization. Using synthetic data, we illustrate that for aliased data, wavelet-based matching pursuit interpolation yields more stable results than sinusoidal function-based one when we use not only pressure data only but also both pressure and particle velocity together.

  7. Probe tip heating assembly

    Science.gov (United States)

    Schmitz, Roger William; Oh, Yunje

    2016-10-25

    A heating assembly configured for use in mechanical testing at a scale of microns or less. The heating assembly includes a probe tip assembly configured for coupling with a transducer of the mechanical testing system. The probe tip assembly includes a probe tip heater system having a heating element, a probe tip coupled with the probe tip heater system, and a heater socket assembly. The heater socket assembly, in one example, includes a yoke and a heater interface that form a socket within the heater socket assembly. The probe tip heater system, coupled with the probe tip, is slidably received and clamped within the socket.

  8. Newnes electronics assembly handbook

    CERN Document Server

    Brindley, Keith

    2013-01-01

    Newnes Electronics Assembly Handbook: Techniques, Standards and Quality Assurance focuses on the aspects of electronic assembling. The handbook first looks at the printed circuit board (PCB). Base materials, basic mechanical properties, cleaning of assemblies, design, and PCB manufacturing processes are then explained. The text also discusses surface mounted assemblies and packaging of electromechanical assemblies, as well as the soldering process. Requirements for the soldering process; solderability and protective coatings; cleaning of PCBs; and mass solder/component reflow soldering are des

  9. Immiscible multicomponent lattice Boltzmann model for fluids with high relaxation time ratio

    Indian Academy of Sciences (India)

    Tao Jiang; Qiwei Gong; Ruofan Qiu; Anlin Wang

    2014-10-01

    An immiscible multicomponent lattice Boltzmann model is developed for fluids with high relaxation time ratios, which is based on the model proposed by Shan and Chen (SC). In the SC model, an interaction potential between particles is incorporated into the discrete lattice Boltzmann equation through the equilibrium velocity. Compared to the SC model, external forces in our model are discretized directly into the discrete lattice Boltzmann equation, as proposed by Guo et al. We develop it into a new multicomponent lattice Boltzmann (LB) model which has the ability to simulate immiscible multicomponent fluids with relaxation time ratio as large as 29.0 and to reduce `spurious velocity’. In this work, the improved model is validated and studied using the central bubble case and the rising bubble case. It finds good applications in both static and dynamic cases for multicomponent simulations with different relaxation time ratios.

  10. Novel nonpeptidic inhibitors of HIV-1 protease obtained via a new multicomponent chemistry strategy

    NARCIS (Netherlands)

    Yehia, Nasser A. M.; Antuch, Walfrido; Beck, Barbara; Hess, Sibylle; Schauer-Vukašinović, Vesna; Almstetter, Michael; Furer, Patrick; Herdtweck, Eberhardt; Dömling, Alexander

    2004-01-01

    Using a newly developed multicomponent chemistry strategy in combination with structure based drug design, a new class of HIV-1 protease inhibitors has been obtained. © 2004 Elsevier Ltd. All rights reserved.

  11. Multicomponent and Longitudinal Imaging Seen as a Communication Channel—An Application to Stroke

    Directory of Open Access Journals (Sweden)

    Mathilde Giacalone

    2017-04-01

    Full Text Available In longitudinal medical studies, multicomponent images of the tissues, acquired at a given stage of a disease, are used to provide information on the fate of the tissues. We propose a quantification of the predictive value of multicomponent images using information theory. To this end, we revisit the predictive information introduced for monodimensional time series and extend it to multicomponent images. The interest of this theoretical approach is illustrated on multicomponent magnetic resonance images acquired on stroke patients at acute and late stages, for which we propose an original and realistic model of noise together with a spatial encoding for the images. We address therefrom very practical questions such as the impact of noise on the predictability, the optimal choice of an observation scale and the predictability gain brought by the addition of imaging components.

  12. Equivalence Between Forward and Backward Boltzmann Equations in Multi-Component Medium

    Institute of Scientific and Technical Information of China (English)

    张竹林

    2002-01-01

    The author generalized the propagator function theory introduced first by Sigmund, and gave a explicitly proof of a equivalence between forward and backward Boltzmann equations in a multi-component medium by using the generalized propagator function theory.

  13. [Study on high accuracy detection of multi-component gas in oil-immerse power transformer].

    Science.gov (United States)

    Fan, Jie; Chen, Xiao; Huang, Qi-Feng; Zhou, Yu; Chen, Gang

    2013-12-01

    In order to solve the problem of low accuracy and mutual interference in multi-component gas detection, a kind of multi-component gas detection network with high accuracy was designed. A semiconductor laser with narrow bandwidth was utilized as light source and a novel long-path gas cell was also used in this system. By taking the single sine signal to modulate the spectrum of laser and using space division multiplexing (SDM) and time division multiplexing (TDM) technique, the detection of multi-component gas was achieved. The experiments indicate that the linearity relevance coefficient is 0. 99 and the measurement relative error is less than 4%. The system dynamic response time is less than 15 s, by filling a volume of multi-component gas into the gas cell gradually. The system has advantages of high accuracy and quick response, which can be used in the fault gas on-line monitoring for power transformers in real time.

  14. Raman correlation spectroscopy: A feasibility study of a new optical correlation technique and development of multi-component nanoparticles using the reprecipitation method

    Science.gov (United States)

    Nishida, Maki

    of CBZ:NCT (carbamazepine:nicotinamide). The experimental results with various characterization methods including DLS, absorption spectroscopy, powder x-ray diffraction, and SEM imaging, verify formation of the multicomponent cocrystals. The observation of the self-assembly of TCNQ crystals is also discussed.

  15. Properties of photonic bandgap in one-dimensional multicomponent photonic crystal

    Institute of Scientific and Technical Information of China (English)

    ZHANG Yi; WANG Qi

    2006-01-01

    Properties of photonic band gap and light propagation in one-dimensional multicomponent photonic crystal have been studied with the optical transfer matrix method.We mainly analyze the relation of photonic band-gap property with the arrangement of components,the refractive index and the geometrical thickness.In this study,the methods to change the width and the location of the existing photonic band-gaps in multicomponent photonic crystal are proposed.

  16. Dechirping of multicomponent chirp signal based on time-space decompositoion and H∞ filter

    Institute of Scientific and Technical Information of China (English)

    陶建武; 石要武; 常文秀

    2004-01-01

    In time-space domain, the multicomponent chirp signal is decomposed into several monocomponent chirp signals. Based on H∞ filter, dechirping for the monocomponent chirp signal is achieved. When data length of the multicomponent chirp signal is short and SNR is low, this approach is applicable. It is insensitive to the exact knowledge of the statistics of the unknown disturbance and noise. Simulation results are presented to show the validity of the approach.

  17. Blind separation of multicomponent seismic wavefield using SVD of reduced dimension spectral matrix

    OpenAIRE

    2017-01-01

    This paper presents a blind separation algorithm based on singular value decomposition (SVD) of reduced dimension spectral matrix. Furthermore, a mathematical matrix model of the multicomponent seismic wavefield is developed as a framework for implementing the proposed algorithm. The proposed blind separation algorithm organizes the frequency transformed multicomponent seismic wavefield into one long data vector. The blind separation of the desired seismic wavefield is accomplished by project...

  18. Gold nanoparticle self-assembly in two-component lipid Langmuir monolayers.

    Science.gov (United States)

    Mogilevsky, Alina; Jelinek, Raz

    2011-02-15

    Self-assembly processes are considered to be fundamental factors in supramolecular chemistry. Langmuir monolayers of surfactants or lipids have been shown to constitute effective 2D "templates" for self-assembled nanoparticles and colloids. Here we show that alkyl-coated gold nanoparticles (Au NPs) adopt distinct configurations when incorporated within Langmuir monolayers comprising two lipid components at different mole ratios. Thermodynamic and microscopy analyses reveal that the organization of the Au NP aggregates is governed by both lipid components. In particular, we show that the configurations of the NP assemblies were significantly affected by the extent of molecular interactions between the two lipid components within the monolayer and the monolayer phases formed by each individual lipid. This study demonstrates that multicomponent Langmuir monolayers significantly modulate the self-assembly properties of embedded Au NPs and that parameters such as the monolayer composition, surface pressure, and temperature significantly affect the 2D nanoparticle organization.

  19. Protein-protein interaction and pathway analyses of top schizophrenia genes reveal schizophrenia susceptibility genes converge on common molecular networks and enrichment of nucleosome (chromatin) assembly genes in schizophrenia susceptibility loci.

    Science.gov (United States)

    Luo, Xiongjian; Huang, Liang; Jia, Peilin; Li, Ming; Su, Bing; Zhao, Zhongming; Gan, Lin

    2014-01-01

    Recent genome-wide association studies have identified many promising schizophrenia candidate genes and demonstrated that common polygenic variation contributes to schizophrenia risk. However, whether these genes represent perturbations to a common but limited set of underlying molecular processes (pathways) that modulate risk to schizophrenia remains elusive, and it is not known whether these genes converge on common biological pathways (networks) or represent different pathways. In addition, the theoretical and genetic mechanisms underlying the strong genetic heterogeneity of schizophrenia remain largely unknown. Using 4 well-defined data sets that contain top schizophrenia susceptibility genes and applying protein-protein interaction (PPI) network analysis, we investigated the interactions among proteins encoded by top schizophrenia susceptibility genes. We found proteins encoded by top schizophrenia susceptibility genes formed a highly significant interconnected network, and, compared with random networks, these PPI networks are statistically highly significant for both direct connectivity and indirect connectivity. We further validated these results using empirical functional data (transcriptome data from a clinical sample). These highly significant findings indicate that top schizophrenia susceptibility genes encode proteins that significantly directly interacted and formed a densely interconnected network, suggesting perturbations of common underlying molecular processes or pathways that modulate risk to schizophrenia. Our findings that schizophrenia susceptibility genes encode a highly interconnected protein network may also provide a novel explanation for the observed genetic heterogeneity of schizophrenia, ie, mutation in any member of this molecular network will lead to same functional consequences that eventually contribute to risk of schizophrenia.

  20. Mitochondrial ribosome assembly in health and disease.

    Science.gov (United States)

    De Silva, Dasmanthie; Tu, Ya-Ting; Amunts, Alexey; Fontanesi, Flavia; Barrientos, Antoni

    2015-01-01

    The ribosome is a structurally and functionally conserved macromolecular machine universally responsible for catalyzing protein synthesis. Within eukaryotic cells, mitochondria contain their own ribosomes (mitoribosomes), which synthesize a handful of proteins, all essential for the biogenesis of the oxidative phosphorylation system. High-resolution cryo-EM structures of the yeast, porcine and human mitoribosomal subunits and of the entire human mitoribosome have uncovered a wealth of new information to illustrate their evolutionary divergence from their bacterial ancestors and their adaptation to synthesis of highly hydrophobic membrane proteins. With such structural data becoming available, one of the most important remaining questions is that of the mitoribosome assembly pathway and factors involved. The regulation of mitoribosome biogenesis is paramount to mitochondrial respiration, and thus to cell viability, growth and differentiation. Moreover, mutations affecting the rRNA and protein components produce severe human mitochondrial disorders. Despite its biological and biomedical significance, knowledge on mitoribosome biogenesis and its deviations from the much-studied bacterial ribosome assembly processes is scarce, especially the order of rRNA processing and assembly events and the regulatory factors required to achieve fully functional particles. This article focuses on summarizing the current available information on mitoribosome assembly pathway, factors that form the mitoribosome assembly machinery, and the effect of defective mitoribosome assembly on human health.

  1. Mechanisms of centrosome separation and bipolar spindle assembly.

    Science.gov (United States)

    Tanenbaum, Marvin E; Medema, René H

    2010-12-14

    Accurate segregation of chromosomes during cell division is accomplished through the assembly of a bipolar microtubule-based structure called the mitotic spindle. Work over the past two decades has identified a core regulator of spindle bipolarity, the microtubule motor protein kinesin-5. However, an increasing body of evidence has emerged demonstrating that kinesin-5-independent mechanisms driving bipolar spindle assembly exist as well. Here, we discuss different pathways that promote initial centrosome separation and bipolar spindle assembly.

  2. Mitotic spindle assembly: May the force be with you

    NARCIS (Netherlands)

    Heesbeen, R.G.H.P. van

    2015-01-01

    The research described in this thesis is focused on multiple pathways required for assembly of a bipolar mitotic spindle. Proper assembly of a bipolar mitotic spindle is essential for the generation of stable kinetochore-microtubule attachments and correct segregation of the sister chromatids. Defec

  3. Autonomous electrochromic assembly

    Energy Technology Data Exchange (ETDEWEB)

    Berland, Brian Spencer; Lanning, Bruce Roy; Stowell, Jr., Michael Wayne

    2015-03-10

    This disclosure describes system and methods for creating an autonomous electrochromic assembly, and systems and methods for use of the autonomous electrochromic assembly in combination with a window. Embodiments described herein include an electrochromic assembly that has an electrochromic device, an energy storage device, an energy collection device, and an electrochromic controller device. These devices may be combined into a unitary electrochromic insert assembly. The electrochromic assembly may have the capability of generating power sufficient to operate and control an electrochromic device. This control may occur through the application of a voltage to an electrochromic device to change its opacity state. The electrochromic assembly may be used in combination with a window.

  4. A new multicomponent salt of imidazole and tetrabromoterepthalic acid: Structural, optical, thermal, electrical transport properties and antibacterial activity along with Hirshfeld surface analysis

    Science.gov (United States)

    Dey, Sanjoy Kumar; Saha, Rajat; Singha, Soumen; Biswas, Susobhan; Layek, Animesh; Middya, Somnath; Ray, Partha Pratim; Bandhyopadhyay, Debasis; Kumar, Sanjay

    2015-06-01

    Herein, we report the structural, optical, thermal and electrical transport properties of a new multicomponent salt (TBTA2-)·2(IM+)·(water) [TBTA-IM] of tetrabromoterepthalic acid (TBTA) with imidazole (IM). The crystal structure of TBTA-IM is determined by both the single crystal and powder X-ray diffraction techniques. The structural analysis has revealed that the supramolecular charge assisted O-⋯Hsbnd N+ hydrogen bonding and Br⋯π interactions play the most vital role in formation of this multicomponent supramolecular assembly. The Hirshfeld surface analysis has been carried out to investigate supramolecular interactions and associated 2D fingerprint plots reveal the relative contribution of these interactions in the crystal structure quantitatively. According to theoretical analysis the HOMO-LUMO energy gap of the salt is 2.92 eV. The salt has been characterized by IR, UV-vis and photoluminescence spectroscopic studies. It shows direct optical transition with band gaps of 4.1 eV, which indicates that the salt is insulating in nature. The photoluminescence spectrum of the salt is significantly different from that of TBTA. Further, a comparative study on the antibacterial activity of the salt with respect to imidazole, Gatifloxacin and Ciprofloxacin has been performed. Moreover, the current-voltage (I-V) characteristic of ITO/TBTA-IM/Al sandwich structure exhibits good rectifying property and the electron tunneling process governs the electrical transport mechanism of the device.

  5. Measuring the Relative Efficiency in Multi-Component Decision Making Units and its Application to Bank Branches

    Directory of Open Access Journals (Sweden)

    A. A. Noora

    2011-06-01

    Full Text Available In many cases of data envelopment analysis (DEA, decision making units (DMUs can be separated into different components. These DMUs are called multi-component DMUs, and studying them is known as multi-component DEA. In multi-component DEA some inputs are shared among the components of a DMU, and some components involve into producing some outputs of the DMU. In this paper, we survey measuring the relative efficiency in multi-component DEA. It is shown that using common idea for measuring the efficiency of multi-component DMUs, the relative efficiency of an evaluating DMU may be not obtained. Therefore, present paper proposes a new DEA model which can obtain the relative efficiencies of multi-component DMUs. Some facts about the proposed approach are also provided by theorems. Moreover, the proposed DEA model is compared to another approach in literature utilizing a set of data about 19 bank branches

  6. Collagen mimetic peptide discs promote assembly of a broad range of natural protein fibers through hydrophobic interactions.

    Science.gov (United States)

    McGuinness, Kenneth; Nanda, Vikas

    2017-07-19

    Collagen mimetic peptides that alone formed two-dimensional nanoscale discs driven by hydrophobic interactions were shown in electron microscopy studies to also co-assemble with natural fibrous proteins to produce discs-on-a-string (DoS) nanostructures. In most cases, peptide discs also facilitated bundling of the protein fibers. This provides insight into how synthetic and natural proteins may be combined to develop multicomponent, multi-dimensional architectures at the nanoscale.

  7. Patchwork assembly of nag-like nitroarene dioxygenase genes and the 3-chlorocatechol degradation cluster for evolution of the 2-chloronitrobenzene catabolism pathway in Pseudomonas stutzeri ZWLR2-1.

    Science.gov (United States)

    Liu, Hong; Wang, Shu-Jun; Zhang, Jun-Jie; Dai, Hui; Tang, Huiru; Zhou, Ning-Yi

    2011-07-01

    Pseudomonas stutzeri ZWLR2-1 utilizes 2-chloronitrobenzene (2CNB) as a sole source of carbon, nitrogen, and energy. To identify genes involved in this pathway, a 16.2-kb DNA fragment containing putative 2CNB dioxygenase genes was cloned and sequenced. Of the products from the 19 open reading frames that resulted from this fragment, CnbAc and CnbAd exhibited striking identities to the respective α and β subunits of the Nag-like ring-hydroxylating dioxygenases involved in the metabolism of nitrotoluene, nitrobenzene, and naphthalene. The encoding genes were also flanked by two copies of insertion sequence IS6100. CnbAa and CnbAb are similar to the ferredoxin reductase and ferredoxin for anthranilate 1,2-dioxygenase from Burkholderia cepacia DBO1. Escherichia coli cells expressing cnbAaAbAcAd converted 2CNB to 3-chlorocatechol with concomitant nitrite release. Cell extracts of E. coli/pCNBC exhibited chlorocatechol 1,2-dioxygenase activity. The cnbCDEF gene cluster, homologous to a 3-chlorocatechol degradation cluster in Sphingomonas sp. strain TFD44, probably contains all of the genes necessary for the conversion of 3-chlorocatechol to 3-oxoadipate. The patchwork-like structure of this catabolic cluster suggests that the cnb cluster for 2CNB degradation evolved by recruiting two catabolic clusters encoding a nitroarene dioxygenase and a chlorocatechol degradation pathway. This provides another example to help elucidate the bacterial evolution of catabolic pathways in response to xenobiotic chemicals.

  8. Analysis of hollow fibre membrane systems for multicomponent gas separation

    KAUST Repository

    Khalilpour, Rajab

    2013-02-01

    This paper analysed the performance of a membrane system over key design/operation parameters. A computation methodology is developed to solve the model of hollow fibre membrane systems for multicomponent gas feeds. The model represented by a nonlinear differential algebraic equation system is solved via a combination of backward differentiation and Gauss-Seidel methods. Natural gas sweetening problem is investigated as a case study. Model parametric analyses of variables, namely feed gas quality, pressure, area, selectivity and permeance, resulted in better understanding of operating and design optima. Particularly, high selectivities and/or permeabilities are shown not to be necessary targets for optimal operation. Rather, a medium selectivity (<60 in the given example) combined with medium permeance (∼300-500×10-10mol/sm2Pa in the given case study) is more advantageous. This model-based membrane systems engineering approach is proposed for the synthesis of efficient and cost-effective multi-stage membrane networks. © 2012 The Institution of Chemical Engineers.

  9. Dynamic p-enrichment schemes for multicomponent reactive flows

    CERN Document Server

    Michoski, C; Dawson, C; Kubatko, E J; Wirasaet, D; Westerink, J J

    2011-01-01

    We present a family of p-enrichment schemes. These schemes may be separated into two basic classes: the first, called \\emph{fixed tolerance schemes}, rely on setting global scalar tolerances on the local regularity of the solution, and the second, called \\emph{dioristic schemes}, rely on time-evolving bounds on the local variation in the solution. Each class of $p$-enrichment scheme is further divided into two basic types. The first type (the Type I schemes) enrich along lines of maximal variation, striving to enhance stable solutions in "areas of highest interest." The second type (the Type II schemes) enrich along lines of maximal regularity in order to maximize the stability of the enrichment process. Each of these schemes are tested over a pair of model problems arising in coastal hydrology. The first is a contaminant transport model, which addresses a declinature problem for a contaminant plume with respect to a bay inlet setting. The second is a multicomponent chemically reactive flow model of estuary e...

  10. Margination and demargination in confined multicomponent suspensions: a parametric study

    Science.gov (United States)

    Graham, Michael; Sinha, Kushal; Henriquez Rivera, Rafael

    2014-11-01

    Blood and other multicomponent suspensions display a segregation behavior in which different components are differentially distributed in the cross-stream direction during flow in a confined geometry such as an arteriole or a microfluidic device. In blood the platelets and leukocytes are strongly segregated to the near wall region and are said to be ``marginated.'' The effects of particle size, shape and rigidity on segregation behavior in confined simple shear flow of binary suspensions are computationally investigated here. The results show that in a mixture of particles with same shape and different membrane rigidity, the stiffer particles marginate while the flexible particles demarginate, moving toward the center of the channel. In a mixture of particle with same membrane rigidity and different shape, particles with smaller aspect ratio marginate while those with higher aspect ratio demarginate. These results are consistent with theoretical arguments based on wall-induced migration and pair collision dynamics. An analytical solution is presented for a model problem that reveals qualitatively different behavior in various parameter regimes. Finally, effects of viscoelasticity of the suspending phase on margination are examined. This work was supported by the NSF under Grants CBET-1132579 and CBET-1436082.

  11. Imprint of Multi-component Dark Matter on AMS-02

    CERN Document Server

    Geng, Chao-Qiang; Tsai, Lu-Hsing

    2013-01-01

    The multi-component decaying dark matter (DM) scenario is investigated to explain the possible excesses in the positron fraction by PAMELA and recently confirmed by AMS-02, and in the total $e^+ +e^-$ flux observed by Fermi-LAT. By performing the $\\chi^2$ fits, we find that two DM components are already enough to give a reasonable fit of both AMS-02 and Fermi-LAT data. The best-fitted results show that the heavier DM component with its mass 1.5 TeV dominantly decays through the $\\mu$-channel, while the lighter one of 100 GeV mainly through the $\\tau$-channel. As a byproduct, the fine structure around 100 GeV observed by AMS-02 and Fermi-LAT can be naturally explained by the dropping due to the lighter DM component. With the obtained model parameters by the fitting, we calculate the diffuse $\\gamma$-ray emission spectrum in this two-component DM scenario, and find that it is consistent with the data measured by Fermi-LAT. We also construct a microscopic particle DM model to naturally realize the two-component ...

  12. Finite-volume WENO scheme for viscous compressible multicomponent flows

    Science.gov (United States)

    Coralic, Vedran; Colonius, Tim

    2014-01-01

    We develop a shock- and interface-capturing numerical method that is suitable for the simulation of multicomponent flows governed by the compressible Navier-Stokes equations. The numerical method is high-order accurate in smooth regions of the flow, discretely conserves the mass of each component, as well as the total momentum and energy, and is oscillation-free, i.e. it does not introduce spurious oscillations at the locations of shockwaves and/or material interfaces. The method is of Godunov-type and utilizes a fifth-order, finite-volume, weighted essentially non-oscillatory (WENO) scheme for the spatial reconstruction and a Harten-Lax-van Leer contact (HLLC) approximate Riemann solver to upwind the fluxes. A third-order total variation diminishing (TVD) Runge-Kutta (RK) algorithm is employed to march the solution in time. The derivation is generalized to three dimensions and nonuniform Cartesian grids. A two-point, fourth-order, Gaussian quadrature rule is utilized to build the spatial averages of the reconstructed variables inside the cells, as well as at cell boundaries. The algorithm is therefore fourth-order accurate in space and third-order accurate in time in smooth regions of the flow. We corroborate the properties of our numerical method by considering several challenging one-, two- and three-dimensional test cases, the most complex of which is the asymmetric collapse of an air bubble submerged in a cylindrical water cavity that is embedded in 10% gelatin. PMID:25110358

  13. Multi-phase multi-component reactive flow in Geodynamics

    Science.gov (United States)

    Oliveira, Beñat; Afonso, Juan Carlos; Zlotnik, Sergio

    2016-04-01

    Multi-phase multi-component reactive flow (MPMCRF) controls a number of important complex geodynamic/geochemical problems, such as melt generation and percolation, metasomatism, rheological weakening, magmatic differentiation, ore emplacement, and fractionation of chemical elements, to name a few. These interacting processes occur over very different spatial and temporal scales and under very different physico-chemical conditions. Therefore, there is a strong motivation in geodynamics for investigating the equations governing MPMCRF, their mathematical structure and properties, and the numerical techniques necessary to obtain reliable and accurate results. In this contribution we present results from a novel numerical framework to solve multiscale MPMCRF problems in geodynamic contexts. Our approach is based on the effective tracking of the most basic building blocks: internal energy and chemical composition. This is achieved through the combination of rigorous solutions to the conservation equations (mass, energy and momentum) for each dynamic phase (instead of the more common "mixture-type" approach) and the transport equation for the chemical species, within the context of classical irreversible thermodynamics. Interfacial processes such as phase changes, chemical diffusion+reaction, and surface tension effects are explicitly incorporated in the context of ensemble averaging. Phase assemblages, mineral and melt compositions, and all other physical parameters of multi-phase systems are obtained through dynamic free-energy minimization procedures.

  14. Numerical Simulation Multicomponent Ion Beam Transport form ECR Ion Source

    Institute of Scientific and Technical Information of China (English)

    MaLei; SongMingtao; ZhangZimin; CaoYun

    2003-01-01

    In order to simulate the transport of multi-components ion beam extracted from an ECR ion source, we have developed a multi-charged ion beam transport program named MCIBS 1.0. The program is dedicated to numerical simulation of the behavior of highly-charged ion beam and optimization of beam optics in transport lines and is realized on a PC with Windows user interface of Microsoft Visual Basic. Among all the ions with different charge states in the beam, the exchanges of electrons between highly charged ions and low charged ions or neutral,atoms of residual gas are taken into account by using classical Molecular Over-barrier Model and Monte Carlo method. An advanced Windows graphical interface makes it; comfortable and friendly for the user to operate in an interactive mode. The present program is used for the numerical calculation and optimization of beam optics in a transport line consisting of various magnetic elements, such as dipole magnet, quadrupole and so on. It is possible to simultaneously simulate 200,000 particles, in a transport line of 340 m at most, and show every particle orbit. Beam cross section graphics and emittance phase pictures can be also shown at any position in the transport line.

  15. Type-1.5 superconductivity in multicomponent systems

    Science.gov (United States)

    Babaev, E.; Carlström, J.; Silaev, M.; Speight, J. M.

    2017-02-01

    In general a superconducting state breaks multiple symmetries and, therefore, is characterized by several different coherence lengths ξi, i = 1 , … , N . Moreover in multiband material even superconducting states that break only a single symmetry are nonetheless described, under certain conditions by multi-component theories with multiple coherence lengths. As a result of that there can appear a state where some coherence lengths are smaller and some are larger than the magnetic field penetration length λ: ξ1 ≤ξ2 … recently termed "type-1.5" superconductivity. This breakdown of type-1/type-2 dichotomy is rather generic near a phase transition between superconducting states with different symmetries. The examples include the transitions between U(1) and U(1) × U(1) states or between U(1) and U(1) × Z2 states. The later example is realized in systems that feature transition between s-wave and s + is states. The extra fundamental length scales have many physical consequences. In particular in these regimes vortices can attract one another at long range but repel at shorter ranges. Such a system can form vortex clusters in low magnetic fields. The vortex clustering in the type-1.5 regime gives rise to many physical effects, ranging from macroscopic phase separation in domains of different broken symmetries, to unusual transport properties. Prepared for the proceedings of Vortex IX conference, Rhodes 12-17 September 2015.

  16. A Multi-Component Model of Hodgkin's Lymphoma.

    Directory of Open Access Journals (Sweden)

    Martin S Staege

    Full Text Available Hodgkin's lymphoma is an example for a tumor with an extremely tight interaction of tumor cells with cells from the tumor micro-environment. These so-called bystander cells are not inert but interact actively with the tumor cells. Some of these cells support tumor growth by delivery of co-stimulating and anti-apoptotic signals ("helper cells". Other cells ("killer cells" are involved in the anti-tumor immune response which is obviously not efficient enough for tumor elimination. The activity of both helper cells and killer cells is regulated by additional cells in the stroma ("regulatory cells". The dynamic behavior of such multi-component systems is difficult to predict. In the present paper we propose a model that can be used for simulation of essential features of this system. In this model, tumor growth depends on (i presence of few cancer stem cells, (ii co-stimulation of cancer cells by the tumor stroma, (iii activity of regulatory cells that suppress killer cells without suppression of helper cells. The success of cytotoxic/cytostatic therapy in this model varies depending on the therapy-related toxicity for each of the cell populations. The model also allows the analysis of immunotherapeutic interventions. Under certain conditions, paradox enhancement of tumor growth can occur after therapeutic intervention. The model might be useful for the design of new treatment strategies for Hodgkin's lymphoma and other tumors with prominent tumor-stroma interaction.

  17. Predicting minimum fluidization velocities of multi-component solid mixtures

    Institute of Scientific and Technical Information of China (English)

    Mohammad Asif

    2013-01-01

    Employing well-established mixing rules for mean properties,appropriate expressions are aerivea for predicting minimum fluidization velocities of multi-component solid mixtures in terms of monocomponent values for the velocity and the bed voidage at incipient fluidization.Based on flow regime and the mixing level of constituent species,it is found that these relationships differ significantly from each other,whether related to size-different or density-different mixtures.For mixed beds of size-different mixtures,the effect of volume contraction is accounted for by the mean voidage term,which is absent for segregated beds.Incorporating the volume-change of mixing leads to values of the mixture minimum fluidization velocities even lower than corresponding values for segregated bed,thus conforming to the trend reported in the literature.Size-different mixtures exhibit flow regime dependence irrespective of whether the bed is mixed or segregated.On the other hand,the mixing of constituent species does not affect the minimum fluidization velocity of density-different mixtures,as the difference in the expressions for a segregated and a mixed system is rather inconsequential.Comparison with experimental data available in the literature is made to test the efficacy of the minimum fluidization velocity expressions derived here.

  18. Multi-component solid solution alloys having high mixing entropy

    Science.gov (United States)

    Bei, Hongbin

    2015-10-06

    A multi-component high-entropy alloy includes a composition selected from the following group: VNbTaTiMoWRe, VNbTaTiMoW, VNbTaTiMoRe, VNbTaTiWRe, VNbTaMoWRe, VNbTiMoWRe, VTaTiMoWRe, NbTaTiMoWRe, VNbTaTiMo, VNbTaTiW, VNbTaMoW, VNbTiMoW, VTaTiMoW, NbTaTiMoW, VNbTaTiRe, VNbTaMoRe, VNbTiMoRe, VTaTiMoRe, NbTaTiMoRe, VNbTaWRe, VNbTiWRe, VTaTiWRe, NbTaTiWRe, VNbMoWRe, VTaMoWRe, NbTaMoWRe, VTiMoWRe, NbTiMoWRe, TaTiMoWRe, wherein relative amounts of each element vary by no more than .+-.15 atomic %.

  19. Dark matter halo formation in the multicomponent dark matter models

    CERN Document Server

    Semenov, Vadim; Doroshkevich, Andrei; Lukash, Vladimir; Mikheeva, Elena

    2013-01-01

    This work investigates a set of cosmological collisionless N-body simulations with featured power spectra of initial perturbations in the context of the core-cusp and satellites problems. On the studied power spectra some scales of fluctuations were suppressed. Such spectral features can be caused by multicomponent dark matter. The density profiles innermost resolved slopes $\\alpha\\equiv d \\log(\\rho) /d \\log(r) $ of the five largest haloes were measured and its dependence on the parameters of the suppression was traced. In a certain range of the parameters the slopes flatten from initial value of about -1.2 to -0.6 or even to -0.2 in one of the cases. This qualitatively demonstrates that (i) profiles shape depends on initial power spectrum and (ii) this effect may be responsible for the solution of the core-cusp problem. The suppression of some part of the initial power spectrum also leads to the decrease of the number of massive subhaloes.

  20. Variable environmental effects on a multicomponent sexually selected trait.

    Science.gov (United States)

    Cole, Gemma L; Endler, John A

    2015-04-01

    Multicomponent signals are made up of interacting elements that generate a functional signaling unit. The interactions between signal components and their effects on individual fitness are not well understood, and the effect of environment is even less so. It is usually assumed that color patterns appear the same in all light environments and that the effects of each color are additive. Using guppies, Poecilia reticulata, we investigated the effect of water color on the interactions between components of sexually selected male coloration. Through behavioral mate choice trials in four different water colors, we estimated the attractiveness of male color patterns, using multivariate fitness estimates and overall signal contrast. Our results show that females exhibit preferences that favor groups of colors rather than individual colors independently and that each environment favors different color combinations. We found that these effects are consistent with female guppies selecting entire color patterns on the basis of overall visual contrast. This suggests that both individuals and populations inhabiting different light environments will be subject to divergent, multivariate selection. Although the appearance of color patterns changes with light environment, achromatic components change little, suggesting that these could function in species recognition or other aspects of communication that must work across environments. Consequently, we predict different phylogenetic patterns between chromatic and achromatic signals within the same clades.

  1. The multicomponent (2+1)-dimensional Glachette-Johnson (GJ) equation hierarchy and its super-integrable coupling system

    Institute of Scientific and Technical Information of China (English)

    Yu Fa-Jun; Zhang Hong-Qing

    2008-01-01

    This paper presents a set of multicomponent matrix Lie algebra,which is used to construct a new loop algebra (A)M.By using the Tu scheme,a Liouville integrable multicomponent equation hierarchy is generated,which possesses the Hamiltonian structure.As its reduction cases,the multicomponent (2+1)-dimensional Glaehette-Johnson (GJ) hierarchy is given.Finally,the super-integrable coupling system of multicomponent (2+1)-dimensional GJ hierarchy is established through enlarging the spectral problem.

  2. Catalyst-free Multicomponent Synthesis of β-Mercapto Diketones in Water%Catalyst-free Multicomponent Synthesis of β-Mercapto Diketones in Water

    Institute of Scientific and Technical Information of China (English)

    Li, Li; Liu, Bokai; WU, Qi; Lin, Xianfu

    2011-01-01

    A simple, efficient and eco-friendly route has been developed for the synthesis of fl-mercapto diketones via a multicomponent reaction of an aldehyde, acetylacetone and thiol in water. This methodology affords a number of β-mercapto diketone derivatives in moderate to good yields.

  3. Polymer Directed Protein Assemblies

    NARCIS (Netherlands)

    van Rijn, Patrick

    2013-01-01

    Protein aggregation and protein self-assembly is an important occurrence in natural systems, and is in some form or other dictated by biopolymers. Very obvious influences of biopolymers on protein assemblies are, e. g., virus particles. Viruses are a multi-protein assembly of which the morphology is

  4. Polymer Directed Protein Assemblies

    NARCIS (Netherlands)

    van Rijn, Patrick

    Protein aggregation and protein self-assembly is an important occurrence in natural systems, and is in some form or other dictated by biopolymers. Very obvious influences of biopolymers on protein assemblies are, e. g., virus particles. Viruses are a multi-protein assembly of which the morphology is

  5. Guided hierarchical co-assembly of soft patchy nanoparticles

    Science.gov (United States)

    Gröschel, André H.; Walther, Andreas; Löbling, Tina I.; Schacher, Felix H.; Schmalz, Holger; Müller, Axel H. E.

    2013-11-01

    The concept of hierarchical bottom-up structuring commonly encountered in natural materials provides inspiration for the design of complex artificial materials with advanced functionalities. Natural processes have achieved the orchestration of multicomponent systems across many length scales with very high precision, but man-made self-assemblies still face obstacles in realizing well-defined hierarchical structures. In particle-based self-assembly, the challenge is to program symmetries and periodicities of superstructures by providing monodisperse building blocks with suitable shape anisotropy or anisotropic interaction patterns (`patches'). Irregularities in particle architecture are intolerable because they generate defects that amplify throughout the hierarchical levels. For patchy microscopic hard colloids, this challenge has been approached by using top-down methods (such as metal shading or microcontact printing), enabling molecule-like directionality during aggregation. However, both top-down procedures and particulate systems based on molecular assembly struggle to fabricate patchy particles controllably in the desired size regime (10-100nm). Here we introduce the co-assembly of dynamic patchy nanoparticles--that is, soft patchy nanoparticles that are intrinsically self-assembled and monodisperse--as a modular approach for producing well-ordered binary and ternary supracolloidal hierarchical assemblies. We bridge up to three hierarchical levels by guiding triblock terpolymers (length scale ~10nm) to form soft patchy nanoparticles (20-50nm) of different symmetries that, in combination, co-assemble into substructured, compartmentalized materials (>10μm) with predictable and tunable nanoscale periodicities. We establish how molecular control over polymer composition programs the building block symmetries and regulates particle positioning, offering a route to well-ordered mixed mesostructures of high complexity.

  6. Sensor mount assemblies and sensor assemblies

    Science.gov (United States)

    Miller, David H [Redondo Beach, CA

    2012-04-10

    Sensor mount assemblies and sensor assemblies are provided. In an embodiment, by way of example only, a sensor mount assembly includes a busbar, a main body, a backing surface, and a first finger. The busbar has a first end and a second end. The main body is overmolded onto the busbar. The backing surface extends radially outwardly relative to the main body. The first finger extends axially from the backing surface, and the first finger has a first end, a second end, and a tooth. The first end of the first finger is disposed on the backing surface, and the tooth is formed on the second end of the first finger.

  7. Incorporating hysteresis in a multi-phase multi-component NAPL modelling framework; a multi-component LNAPL gasoline example

    Science.gov (United States)

    Sookhak Lari, Kaveh; Davis, Greg B.; Johnston, Colin D.

    2016-10-01

    The longevity of chemicals in subsurface NAPL releases is a function of their partitioning into different phases. Hysteresis can affect distribution and partitioning of compounds in the vadose zone. We separated and modified hysteresis code from NAPL Simulator (which include hysteresis caused by fluid entrapment and capillary effects) and embedded it into TMVOC. For the first time, the resulting framework is used to model multi-component and multi-phase NAPL release, partitioning and transport. We then applied the verified framework to model effects of hysteresis on partitioning of BTEX, TMB and short and long chain alkanes from a typical gasoline spill. Excluding hysteresis resulted in an expanded LNAPL plume and underestimated the compounds longevity. Hysteresis altered the spatial distribution of LNAPL molar fractions as well as gas flow path and contaminants distribution compared to the non-hysteretic case. The amplifying effect of hysteresis on the longevity of mixtures (and associated risks) should be considered if non-hysteretic relationships are applied.

  8. Crystalline self-assembly of organic molecules with metal ions at the air-aqueous solution interface. A grazing incidence X-ray scattering study

    DEFF Research Database (Denmark)

    Weissbuch, I.; Buller, R.; Kjær, K.;

    2002-01-01

    The advent of intense X-rays from synchrotron sources made possible to probe, at the molecular level, the structural aspects of self-assemblies generated at interfaces. Here we present the two-dimensional (2-D) packing arrangements of two-, three- and multi-component organo-metallic self-assembli...... amphiphiles; organization of ionophores in the presence of metal ions in membrane-like environment; self-assembly of 2 x 2 and 3 x 3 silver(I) grid-type complexes generated at the air-solution interface. (C) 2002 Elsevier Science B.V. All rights reserved....

  9. Soldering in electronics assembly

    CERN Document Server

    Judd, Mike

    2013-01-01

    Soldering in Electronics Assembly discusses several concerns in soldering of electronic assemblies. The book is comprised of nine chapters that tackle different areas in electronic assembly soldering. Chapter 1 discusses the soldering process itself, while Chapter 2 covers the electronic assemblies. Chapter 3 talks about solders and Chapter 4 deals with flux. The text also tackles the CS and SC soldering process. The cleaning of soldered assemblies, solder quality, and standards and specifications are also discussed. The book will be of great use to professionals who deal with electronic assem

  10. A scalable and accurate targeted gene assembly tool (SAT-Assembler) for next-generation sequencing data.

    Science.gov (United States)

    Zhang, Yuan; Sun, Yanni; Cole, James R

    2014-08-01

    Gene assembly, which recovers gene segments from short reads, is an important step in functional analysis of next-generation sequencing data. Lacking quality reference genomes, de novo assembly is commonly used for RNA-Seq data of non-model organisms and metagenomic data. However, heterogeneous sequence coverage caused by heterogeneous expression or species abundance, similarity between isoforms or homologous genes, and large data size all pose challenges to de novo assembly. As a result, existing assembly tools tend to output fragmented contigs or chimeric contigs, or have high memory footprint. In this work, we introduce a targeted gene assembly program SAT-Assembler, which aims to recover gene families of particular interest to biologists. It addresses the above challenges by conducting family-specific homology search, homology-guided overlap graph construction, and careful graph traversal. It can be applied to both RNA-Seq and metagenomic data. Our experimental results on an Arabidopsis RNA-Seq data set and two metagenomic data sets show that SAT-Assembler has smaller memory usage, comparable or better gene coverage, and lower chimera rate for assembling a set of genes from one or multiple pathways compared with other assembly tools. Moreover, the family-specific design and rapid homology search allow SAT-Assembler to be naturally compatible with parallel computing platforms. The source code of SAT-Assembler is available at https://sourceforge.net/projects/sat-assembler/. The data sets and experimental settings can be found in supplementary material.

  11. A scalable and accurate targeted gene assembly tool (SAT-Assembler for next-generation sequencing data.

    Directory of Open Access Journals (Sweden)

    Yuan Zhang

    2014-08-01

    Full Text Available Gene assembly, which recovers gene segments from short reads, is an important step in functional analysis of next-generation sequencing data. Lacking quality reference genomes, de novo assembly is commonly used for RNA-Seq data of non-model organisms and metagenomic data. However, heterogeneous sequence coverage caused by heterogeneous expression or species abundance, similarity between isoforms or homologous genes, and large data size all pose challenges to de novo assembly. As a result, existing assembly tools tend to output fragmented contigs or chimeric contigs, or have high memory footprint. In this work, we introduce a targeted gene assembly program SAT-Assembler, which aims to recover gene families of particular interest to biologists. It addresses the above challenges by conducting family-specific homology search, homology-guided overlap graph construction, and careful graph traversal. It can be applied to both RNA-Seq and metagenomic data. Our experimental results on an Arabidopsis RNA-Seq data set and two metagenomic data sets show that SAT-Assembler has smaller memory usage, comparable or better gene coverage, and lower chimera rate for assembling a set of genes from one or multiple pathways compared with other assembly tools. Moreover, the family-specific design and rapid homology search allow SAT-Assembler to be naturally compatible with parallel computing platforms. The source code of SAT-Assembler is available at https://sourceforge.net/projects/sat-assembler/. The data sets and experimental settings can be found in supplementary material.

  12. Scaled Particle Theory for Multicomponent Hard Sphere Fluids Confined in Random Porous Media.

    Science.gov (United States)

    Chen, W; Zhao, S L; Holovko, M; Chen, X S; Dong, W

    2016-06-23

    The formulation of scaled particle theory (SPT) is presented for a quite general model of fluids confined in a random porous media, i.e., a multicomponent hard sphere (HS) fluid in a multicomponent hard sphere or a multicomponent overlapping hard sphere (OHS) matrix. The analytical expressions for pressure, Helmholtz free energy, and chemical potential are derived. The thermodynamic consistency of the proposed theory is established. Moreover, we show that there is an isomorphism between the SPT for a multicomponent system and that for a one-component system. Results from grand canonical ensemble Monte Carlo simulations are also presented for a binary HS mixture in a one-component HS or a one-component OHS matrix. The accuracy of various variants derived from the basic SPT formulation is appraised against the simulation results. Scaled particle theory, initially formulated for a bulk HS fluid, has not only provided an analytical tool for calculating thermodynamic properties of HS fluid but also helped to gain very useful insight for elaborating other theoretical approaches such as the fundamental measure theory (FMT). We expect that the general SPT for multicomponent systems developed in this work can contribute to the study of confined fluids in a similar way.

  13. Development of 3D Multicomponent Model for Cold Spray Process Using Nitrogen and Air

    Directory of Open Access Journals (Sweden)

    Muhammad Faizan Ur Rab

    2015-10-01

    Full Text Available Cold spray is a unique coating technology that allows for solid state deposition of particles under atmospheric pressure. In this paper, a three dimensional, Computational Fluid Dynamics (CFD multicomponent model is developed to estimate cold spray gas conditions involving both nitrogen and air. Calibration of the model followed by validation is accomplished by considering the thermal history of substrate exposed to cold spray supersonic jet. The developed holistic multicomponent model is effective in determining the state of gas and particles from injection point to the substrate surface with the advantage of optimizing very rapid cold spray deposition in nanoseconds. The validation of k-ε type CFD multicomponent model is done by using the temperature measured for a titanium substrate exposed to cold spray nitrogen at 800 °C and 3 MPa. Heat transfer and radiation are considered for the de Laval nozzle used in cold spray experiments. The calibrated multicomponent model has successfully estimated the state of propellant gas for the chosen high pressure and high temperature cold spray conditions. Moreover, the multicomponent model predictions are in good agreement with a previous holistic three dimensional cold spray model in which only nitrogen was used as the surrounding as well as the propellant gas.

  14. Composite fan stator assembly

    Energy Technology Data Exchange (ETDEWEB)

    Donges, G.L.

    1993-07-13

    A composite fan stator assembly is described for a gas turbine engine having at least two fan rotor stages, the composite stator assembly comprising: an annular composite fan case assembly including an access port, the fan case assembly circumferentially disposed around first and second fan rotor stage locations, a composite fan stator stage supported by and extending radially inward of the fan case assembly and axially disposed between the two fan rotor stage locations, the fan stator stage includes at least one removable vane segment accessible for removal through the access port for assembly and reassembly, the composite fan case assembly including a separable composite forward fan case assembly and a separable composite aft fan case assembly spaced axially aft of the forward fan case assembly, the forward fan case assembly being bolted to the aft fan case assembly, wherein the composite fan stator stage is axially and radially trapped and supported by the forward and aft fan case assemblies. A composite stator vane assembly comprising: a composite inner shroud, a composite outer shroud disposed radially outward of the inner shroud, a plurality of vanes disposed between the shrouds, the vanes including a suction side and a pressure side and radially inner and outer roots, the roots extending through platforms of corresponding ones of the inner and outer shrouds, four box-type attachment elements corresponding to curved suction and pressure sides of the inner and outer roots, the box-type attachment elements having two connected legs angled with respect to each other, a first one of the legs extending along, conforming to the curve of, and bonded to a corresponding one of the airfoil root sides, and a second one of the legs extending along and bonded to a composite shroud surface.

  15. Polymer Percolation Threshold in Multi-Component HPMC Matrices Tablets

    Directory of Open Access Journals (Sweden)

    Maryam Maghsoodi

    2011-06-01

    Full Text Available Introduction: The percolation theory studies the critical points or percolation thresholds of the system, where onecomponent of the system undergoes a geometrical phase transition, starting to connect the whole system. The application of this theory to study the release rate of hydrophilic matrices allows toexplain the changes in release kinetics of swellable matrix type system and results in a clear improvement of the design of controlled release dosage forms. Methods: In this study, the percolation theory has been applied to multi-component hydroxypropylmethylcellulose (HPMC hydrophilic matrices. Matrix tablets have been prepared using phenobarbital as drug,magnesium stearate as a lubricant employing different amount of lactose and HPMC K4M as a fillerandmatrix forming material, respectively. Ethylcelullose (EC as a polymeric excipient was also examined. Dissolution studies were carried out using the paddle method. In order to estimate the percolation threshold, the behaviour of the kinetic parameters with respect to the volumetric fraction of HPMC at time zero, was studied. Results: In both HPMC/lactose and HPMC/EC/lactose matrices, from the point of view of the percolation theory, the optimum concentration for HPMC, to obtain a hydrophilic matrix system for the controlled release of phenobarbital is higher than 18.1% (v/v HPMC. Above 18.1% (v/v HPMC, an infinite cluster of HPMC would be formed maintaining integrity of the system and controlling the drug release from the matrices. According to results, EC had no significant influence on the HPMC percolation threshold. Conclusion: This may be related to broad functionality of the swelling hydrophilic matrices.

  16. Liquid-Vapor Equilibrium of Multicomponent Cryogenic Systems

    Science.gov (United States)

    Thompson, W. Reid; Calado, Jorge C. G.; Zollweg, John A.

    1990-01-01

    Liquid-vapor and solid-vapor equilibria at low to moderate pressures and low temperatures are important in many solar system environments, including the surface and clouds of Titan, the clouds of Uranus and Neptune, and the surfaces of Mars and Triton. The familiar cases of ideal behavior are limiting cases of a general thermodynamic representation for the vapor pressure of each component in a homogeneous multicomponent system. The fundamental connections of laboratory measurements to thermodynamic models are through the Gibbs-Duhem relation and the Gibbs-Helmholtz relation. Using laboratory measurements of the total pressure, temperature, and compositions of the liquid and vapor phases at equilibrium, the values of these parameters can be determined. The resulting model for vapor-liquid equilibrium can then conveniently and accurately be used to calculate pressures, compositions, condensation altitudes, and their dependencies on changing climatic conditions. A specific system being investigated is CH4-C2H6-N2, at conditions relevant to Titan's surface and atmosphere. Discussed are: the modeling of existing data on CH4-N2, with applications to the composition of Titan's condensate clouds; some new measurements on the CH4-C2H6 binary, using a high-precision static/volumetric system, and on the C2H6-N2 binary, using the volumetric system and a sensitive cryogenic flow calorimeter; and describe a new cryogenic phase-equilibrium vessel with which we are beginning a detailed, systematic study of the three constituent binaries and the ternary CH4-C2H6-N2 system at temperatures ranging from 80 to 105 K and pressures from 0.1 to 7 bar.

  17. Dexter energy transfer pathways.

    Science.gov (United States)

    Skourtis, Spiros S; Liu, Chaoren; Antoniou, Panayiotis; Virshup, Aaron M; Beratan, David N

    2016-07-19

    Energy transfer with an associated spin change of the donor and acceptor, Dexter energy transfer, is critically important in solar energy harvesting assemblies, damage protection schemes of photobiology, and organometallic opto-electronic materials. Dexter transfer between chemically linked donors and acceptors is bridge mediated, presenting an enticing analogy with bridge-mediated electron and hole transfer. However, Dexter coupling pathways must convey both an electron and a hole from donor to acceptor, and this adds considerable richness to the mediation process. We dissect the bridge-mediated Dexter coupling mechanisms and formulate a theory for triplet energy transfer coupling pathways. Virtual donor-acceptor charge-transfer exciton intermediates dominate at shorter distances or higher tunneling energy gaps, whereas virtual intermediates with an electron and a hole both on the bridge (virtual bridge excitons) dominate for longer distances or lower energy gaps. The effects of virtual bridge excitons were neglected in earlier treatments. The two-particle pathway framework developed here shows how Dexter energy-transfer rates depend on donor, bridge, and acceptor energetics, as well as on orbital symmetry and quantum interference among pathways.

  18. Artemisia Iwayomogi Extract Attenuates High-Fat Diet-Induced Hypertriglyceridemia in Mice: Potential Involvement of the Adiponectin-AMPK Pathway and Very Low Density Lipoprotein Assembly in the Liver.

    Science.gov (United States)

    Lee, Jinhui; Narayan, Vikram P; Hong, Eun Young; Whang, Wan Kyunn; Park, Taesun

    2017-08-12

    This study aimed to examine the protective effect of Artemisia iwayomogi extract (AI) against hypertriglyceridemia induced by a high-fat diet (HFD) in mice and to uncover the underlying molecular mechanisms. C57BL/6N mice were fed chow, HFD, HFD + 0.1% AI, HFD + 0.25% AI, or HFD + 0.5% AI for 10 weeks. The addition of 0.25% and 0.5% AI resulted in dose-dependent improvements in the major parameters of hypertriglyceridemia, including plasma triglyceride, free fatty acids, apolipoprotein B, and lipoprotein lipase, with parallel reductions in body weight gain, hepatic lipid accumulation, and insulin resistance. These beneficial effects were accompanied by the activation of adiponectin-adenosine monophosphate-activated protein kinase (AMPK) mediated signaling cascades in the liver, which downregulated molecules involved in lipogenesis and concurrently upregulated molecules related to fatty acid oxidation. The downregulation of molecules involved in very low density lipoprotein assembly, which was associated with improved hepatic insulin signaling, also appeared to contribute to the AI-induced attenuation of hypertriglyceridemia.

  19. Dual Hierarchies of a Multi-Component Camassa-Holm System

    Science.gov (United States)

    Li, Hong-Min; Li, Yu-Qi; Chen, Yong

    2015-10-01

    In this paper, we derive the bi-Hamiltonian structure of a multi-component Camassa-Holm system, which associates with the multi-component AKNS hierarchy and multi-component KN hierarchy via the tri-Hamiltonian duality method. Furthermore, the spectral problems of the dual hierarchies may be obtained. Supported by the National Natural Science Foundation of China under Grant Nos. 11275072 and 11375090, Research Fund for the Doctoral Program of Higher Education of China under No. 20120076110024, the Innovative Research Team Program of the National Natural Science Foundation of China under Grant No. 61321064, Shanghai Knowledge Service Platform for Trustworthy Internet of Things under Grant No. ZF1213, Talent Fund and K.C. Wong Magna Fund in Ningbo University

  20. Multi-component Cahn-Hilliard system with different boundary conditions in complex domains

    Science.gov (United States)

    Li, Yibao; Choi, Jung-Il; Kim, Junseok

    2016-10-01

    We propose an efficient phase-field model for multi-component Cahn-Hilliard (CH) systems in complex domains. The original multi-component Cahn-Hilliard system with a fixed phase is modified in order to make it suitable for complex domains in the Cartesian grid, along with contact angle or no mass flow boundary conditions on the complex boundaries. The proposed method uses a practically unconditionally gradient stable nonlinear splitting numerical scheme. Further, a nonlinear full approximation storage multigrid algorithm is used for solving semi-implicit formulations of the multi-component CH system, incorporated with an adaptive mesh refinement technique. The robustness of the proposed method is validated through various numerical simulations including multi-phase separations via spinodal decomposition, equilibrium contact angle problems, and multi-phase flows with a background velocity field in complex domains.

  1. Diversity oriented combinatorial synthesis of multivalent glycomimetics through a multicomponent domino process.

    Science.gov (United States)

    Bellucci, Maria Cristina; Sani, Monica; Sganappa, Aurora; Volonterio, Alessandro

    2014-12-08

    Both multicomponent reactions and diversity oriented synthesis are indispensable tools for the modern medicinal chemist. However, their employment for the synthesis of multivalent glycomimetics has not been exploited so far although the importance that such compounds play in exploring multivalency on glycoside inhibition. Herein, we report the combinatorial synthesis of diversity oriented hetero di- and trivalent glycomimetics through a multicomponent domino process. The process is high yielding and very general, working efficiently with easily accessible sugar starting materials such as glycosylamines, glycosylazides, and glycosylisothiocyanates, having the reactive functional groups tethered either directly to the anomeric carbon, through a suitable linker, or to the primary 6 position of hexoses (or 5 position of pentoses), leading, in the latter case, to glycomimetics with artificial enzymatically stable backbone. The process has been also exploited for the multicomponent synthesis of aminoglycoside (neomycin) conjugates.

  2. Blind separation of multicomponent seismic wavefield using SVD of reduced dimension spectral matrix

    Directory of Open Access Journals (Sweden)

    Abdullah Al-Hasanat

    2017-01-01

    Full Text Available This paper presents a blind separation algorithm based on singular value decomposition (SVD of reduced dimension spectral matrix. Furthermore, a mathematical matrix model of the multicomponent seismic wavefield is developed as a framework for implementing the proposed algorithm. The proposed blind separation algorithm organizes the frequency transformed multicomponent seismic wavefield into one long data vector. The blind separation of the desired seismic wavefield is accomplished by projecting the long data vector onto the eigenvectors of the dimensionally reduced spectral matrix according to the energy of the eigenvalues. The proposed algorithm is tested on both synthetic and real multicomponent seismic wavefields. Results show outstanding performance compared to the MC-WBSMF algorithm. Therefore, the computational complexity is reduced by a factor greater than 14,400 and there is an improvement in accuracy of 17.5%.

  3. Pore-scale simulation of multicomponent multiphase reactive transport with dissolution and precipitation

    CERN Document Server

    Chen, Li; Tang, Qing; Robinson, Bruce A; He, Ya-Ling; Tao, Wen-Quan

    2014-01-01

    Multicomponent multiphase reactive transport processes with dissolution-precipitation are widely encountered in energy and environment systems. A pore-scale two-phase multi-mixture model based on the lattice Boltzmann method (LBM) is developed for such complex transport processes, where each phase is considered as a mixture of miscible components in it. The liquid-gas fluid flow with large density ratio is simulated using the multicomponent multiphase pseudo-potential LB model; the transport of certain solute in the corresponding solvent is solved using the mass transport LB model; and the dynamic evolutions of the liquid-solid interface due to dissolution-precipitation are captured by an interface tracking scheme. The model developed can predict coupled multiple physicochemical processes including multiphase flow, multicomponent mass transport, homogeneous reactions in the bulk fluid and heterogeneous dissolution-precipitation reactions at the fluid-solid interface, and dynamic evolution of the solid matrix ...

  4. Evaluation of a Mathematical Model for Single Component Adsorption Equilibria with Reference to the Prediction of Multicomponent Adsorption Equilibria

    DEFF Research Database (Denmark)

    Krøll, Annette Elisabeth; Marcussen, Lis

    1997-01-01

    An equilibrium equation for pure component adsorption is compared to experiments and to the vacancy solution theory. The investigated equilibrium equation is a special case of a model for prediction of multicomponent adsorption equilibria.The vacancy solution theory for multicomponent systems req...

  5. The Energy Landscape for the Self-Assembly of a Two-Dimensional DNA Origami Complex.

    Science.gov (United States)

    Fern, Joshua; Lu, Jennifer; Schulman, Rebecca

    2016-02-23

    While the self-assembly of different types of DNA origami into well-defined complexes could produce nanostructures on which thousands of locations can be independently functionalized with nanometer-scale precision, current assembly processes have low yields. Biomolecular complex formation requires relatively strong interactions and reversible assembly pathways that prevent kinetic trapping. To characterize how these issues control origami complex yields, the equilibrium constants for each possible reaction for the assembly of a heterotetrameric ring, the unit cell of a rectangular lattice, were measured using fluorescence colocalization microscopy. We found that origami interface structure controlled reaction free energies. Cooperativity, measured for the first time for a DNA nanostructure assembly reaction, was weak. Simulations of assembly kinetics suggest assembly occurs via parallel pathways with the primary mechanism of assembly being hierarchical: two dimers form that then bind to one another to complete the ring.

  6. STD-DOSY: A new NMR method to analyze multi-component enzyme/substrate systems

    Science.gov (United States)

    Kramer, Markus; Kleinpeter, Erich

    2010-02-01

    A new approach to analyze multi-component Saturation Transfer Difference (STD) NMR spectra by combining the STD and the DOSY experiment is proposed. The resulting pulse sequence was successfully used to simplify an exemplary multi-component protein/substrate system by means of standard DOSY processing methods. Furthermore, the same experiment could be applied to calculate the ratio of saturated substrate molecules and its saturation rate in the case of competitive interactions. This ratio depends on the strength of this interaction between the substrates and the protein, so that this kind of information could be extracted from the results of our experiment.

  7. A pseudopotential-based multiple-relaxation-time lattice Boltzmann model for multicomponent/multiphase flows

    Institute of Scientific and Technical Information of China (English)

    Zhen-Hua Chai; Tian-Shou Zhao

    2012-01-01

    In this paper,a pseudopotential-based multiplerelaxation-time lattice Boltzmann model is proposed for multicomponent/multiphase flow systems.Unlike previous models in the literature,the present model not only enables the study of multicomponent flows with different molecular weights,different viscosities and different Schmidt numbers,but also ensures that the distribution function of each component evolves on the same square lattice without invoking additional interpolations.Furthermore,the Chapman-Enskog analysis shows that the present model results in the correct hydrodynamic equations,and satisfies the indifferentiability principle.The numerical validation exercises further demonstrate that the favorable performance of the present model.

  8. Thermodiffusion in Multicomponent Mixtures Thermodynamic, Algebraic, and Neuro-Computing Models

    CERN Document Server

    Srinivasan, Seshasai

    2013-01-01

    Thermodiffusion in Multicomponent Mixtures presents the computational approaches that are employed in the study of thermodiffusion in various types of mixtures, namely, hydrocarbons, polymers, water-alcohol, molten metals, and so forth. We present a detailed formalism of these methods that are based on non-equilibrium thermodynamics or algebraic correlations or principles of the artificial neural network. The book will serve as single complete reference to understand the theoretical derivations of thermodiffusion models and its application to different types of multi-component mixtures. An exhaustive discussion of these is used to give a complete perspective of the principles and the key factors that govern the thermodiffusion process.

  9. Porous multi-component material for the capture and separation of species of interest

    Energy Technology Data Exchange (ETDEWEB)

    Addleman, Raymond S.; Chouyyok, Wilaiwan; Li, Xiaohong S.; Cinson, Anthony D.; Gerasimenko, Aleksandr A

    2016-06-21

    A method and porous multi-component material for the capture, separation or chemical reaction of a species of interest is disclosed. The porous multi-component material includes a substrate and a composite thin film. The composite thin film is formed by combining a porous polymer with a nanostructured material. The nanostructured material may include a surface chemistry for the capture of chemicals or particles. The composite thin film is coupled to the support or device surface. The method and material provides a simple, fast, and chemically and physically benign way to integrate nanostructured materials into devices while preserving their chemical activity.

  10. Joint Estimation of Time-Frequency Signature and DOA Based on STFD for Multicomponent Chirp Signals.

    Science.gov (United States)

    Zhao, Ziyue; Liu, Congfeng

    2014-01-01

    In the study of the joint estimation of time-frequency signature and direction of arrival (DOA) for multicomponent chirp signals, an estimation method based on spatial time-frequency distributions (STFDs) is proposed in this paper. Firstly, array signal model for multicomponent chirp signals is presented and then array processing is applied in time-frequency analysis to mitigate cross-terms. According to the results of the array processing, Hough transform is performed and the estimation of time-frequency signature is obtained. Subsequently, subspace method for DOA estimation based on STFD matrix is achieved. Simulation results demonstrate the validity of the proposed method.

  11. Multicomponent Group-Related Coherent States for Lie Group Chain G K

    Institute of Scientific and Technical Information of China (English)

    HE Hui-Yong; LI Guang-Hua; LI Jiang-Fan

    2001-01-01

    The multicomponent group-related coherent states for the Lie group chain G K are introduced. Their coupling coefficients are presented. The relations between these coupling coefficients and those (in the usual sense) of the irreducible representation bases labelled by G K are obtained. The generalized Racah's factorization lemma about the coupling coefficients of such coherent states is given. As an example, the multicomponent group-related coherent states for the Lie group chain Sp(4) D SO(3)1 S0(3)2 are found. The uncertainty relation and the squeezing property are discussed.``

  12. Observation of multi-component spatial vector solitons of four-wave mixing.

    Science.gov (United States)

    Wang, Ruimin; Wu, Zhenkun; Zhang, Yiqi; Zhang, Zhaoyang; Yuan, Chenzhi; Zheng, Huaibin; Li, Yuanyuan; Zhang, Jinhai; Zhang, Yanpeng

    2012-06-18

    We report the observation of multi-component dipole and vortex vector solitons composed of eight coexisting four-wave mixing (FWM) signals in two-level atomic system. The formation and stability of the multi-component dipole and vortex vector solitons are observed via changing the experiment parameters, including the frequency detuning, powers, and spatial configuration of the involved beams and the temperature of the medium. The transformation between modulated vortex solitons and rotating dipole solitons is observed at different frequency detunings. The interaction forces between different components of vector solitons are also investigated.

  13. Multi-Component Integrable Systems and Invariant Curve Flows in Certain Geometries

    Directory of Open Access Journals (Sweden)

    Changzheng Qu

    2013-01-01

    Full Text Available In this paper, multi-component generalizations to the Camassa-Holm equation, the modified Camassa-Holm equation with cubic nonlinearity are introduced. Geometric formulations to the dual version of the Schrödinger equation, the complex Camassa-Holm equation and the multi-component modified Camassa-Holm equation are provided. It is shown that these equations arise from non-streching invariant curve flows respectively in the three-dimensional Euclidean geometry, the two-dimensional Möbius sphere and n-dimensional sphere S^n(1. Integrability to these systems is also studied.

  14. Multi-Component Integrable Systems and Invariant Curve Flows in Certain Geometries

    Science.gov (United States)

    Qu, Changzheng; Song, Junfeng; Yao, Ruoxia

    2013-01-01

    In this paper, multi-component generalizations to the Camassa-Holm equation, the modified Camassa-Holm equation with cubic nonlinearity are introduced. Geometric formulations to the dual version of the Schrödinger equation, the complex Camassa-Holm equation and the multi-component modified Camassa-Holm equation are provided. It is shown that these equations arise from non-streching invariant curve flows respectively in the three-dimensional Euclidean geometry, the two-dimensional Möbius sphere and n-dimensional sphere Sn(1). Integrability to these systems is also studied.

  15. PROGRAM DROP: A computer program for prediction of evaporation from freely falling multicomponent drops

    Energy Technology Data Exchange (ETDEWEB)

    Gavin, P.M. [Gavin Consulting, Newark, OH (United States)

    1996-12-01

    PROGRAM DROP consists of a series of FORTRAN routine which together are used to model the evaporation of a freely falling, multicomponent drop composed of an arbitrary number of volatile species and a single nonvolatile, inert component. The physics underlying the model are clearly identified, and the model`s relationship to previous work in the literature is described. Test cases are used to illustrate the viability of the model and to highlight its potential usefulness in the accurate prediction of multicomponent droplet vaporization in a variety of applications.

  16. Thermodynamic Study of the Role of Interface Curvature on Multicomponent Vapor-Liquid Phase Equilibrium.

    Science.gov (United States)

    Shardt, Nadia; Elliott, Janet A W

    2016-04-14

    The effect of interface curvature on phase equilibrium has been much more studied for single-component than multicomponent systems. We isolate the effect of curvature on multicomponent vapor-liquid equilibrium (VLE) phase envelopes and phase composition diagrams using the ideal system methanol/ethanol and the nonideal system ethanol/water as illustrative examples. An important finding is how nanoscale interface curvature shifts the azeotrope (equal volatility point) of nonideal systems. Understanding of the effect of curvature on VLE can be exploited in future nanoscale prediction and design.

  17. Development and application of novel multicomponent reactions using (a)alfa-acidic isocyanides

    OpenAIRE

    Bon, R.S.

    2007-01-01

    The research described in this thesis deals with: i) the exploitation of the a-acidity of isocyanides in the development of new multicomponent reactions; ii) the application of such MCRs for the synthesis of NHC complexes; and iii) the C–2 functionalisation of 2 imidazolines as a route towards libraries of potential p53-MDM2 interaction inhibitors. In Chapter 2, the translation of Schöllkopf’s aldol type chemistry with a-isocyanoacetates to a novel multicomponent synthesis of 2H-2-imidazoline...

  18. Analysis of Optimization for Preliminary Design of Multi-Component Mooring Systems

    Institute of Scientific and Technical Information of China (English)

    YU Long; TAN Jia-hua

    2005-01-01

    Multi-component mooring systems become widely used in deep water position-keeping of drilling and production platforms. However, versatile materials make it difficult to design appropriate mooring lines made of several segments. Based on catenary equations of a multi-component mooring line at a specific water depth, this paper establishes a minimum model for designing this kind of lines. The model is solved by Genetic Algorithm and Multi-Objective Planning respectively. The model is verified by its application to a practical mooring design assignment-a quasi-static analysis for a large semi-submersible. The optimal result is finally obtained with the aid of design graphs.

  19. Dynamics of solitons in multicomponent long wave–short wave resonance interaction system

    Indian Academy of Sciences (India)

    T Kanna; K Sakkaravarthi; M Vijayajayanthi; M Lakshmanan

    2015-03-01

    In this paper, we study the formation of solitons, their propagation and collision behaviour in an integrable multicomponent (2+1)-dimensional long wave–short wave resonance interaction (-LSRI) system. First, we briefly revisit the earlier results on the dynamics of bright solitons and demonstrate the fascinating energy exchange collision of bright solitons appearing in the short-wave components of the -LSRI system. Then, we explicitly construct the exact one-and two-multicomponent dark soliton solutions of the -LSRI system by using the Hirota’s direct method and explore its propagation dynamics. Also, we study the features of dark soliton collisions.

  20. Operon Gene Order Is Optimized for Ordered Protein Complex Assembly.

    Science.gov (United States)

    Wells, Jonathan N; Bergendahl, L Therese; Marsh, Joseph A

    2016-02-02

    The assembly of heteromeric protein complexes is an inherently stochastic process in which multiple genes are expressed separately into proteins, which must then somehow find each other within the cell. Here, we considered one of the ways by which prokaryotic organisms have attempted to maximize the efficiency of protein complex assembly: the organization of subunit-encoding genes into operons. Using structure-based assembly predictions, we show that operon gene order has been optimized to match the order in which protein subunits assemble. Exceptions to this are almost entirely highly expressed proteins for which assembly is less stochastic and for which precisely ordered translation offers less benefit. Overall, these results show that ordered protein complex assembly pathways are of significant biological importance and represent a major evolutionary constraint on operon gene organization.

  1. ex vivo DNA assembly

    Directory of Open Access Journals (Sweden)

    Adam B Fisher

    2013-10-01

    Full Text Available Even with decreasing DNA synthesis costs there remains a need for inexpensive, rapid and reliable methods for assembling synthetic DNA into larger constructs or combinatorial libraries. Advances in cloning techniques have resulted in powerful in vitro and in vivo assembly of DNA. However, monetary and time costs have limited these approaches. Here, we report an ex vivo DNA assembly method that uses cellular lysates derived from a commonly used laboratory strain of Escherichia coli for joining double-stranded DNA with short end homologies embedded within inexpensive primers. This method concurrently shortens the time and decreases costs associated with current DNA assembly methods.

  2. Composite turbine bucket assembly

    Energy Technology Data Exchange (ETDEWEB)

    Liotta, Gary Charles; Garcia-Crespo, Andres

    2014-05-20

    A composite turbine blade assembly includes a ceramic blade including an airfoil portion, a shank portion and an attachment portion; and a transition assembly adapted to attach the ceramic blade to a turbine disk or rotor, the transition assembly including first and second transition components clamped together, trapping said ceramic airfoil therebetween. Interior surfaces of the first and second transition portions are formed to mate with the shank portion and the attachment portion of the ceramic blade, and exterior surfaces of said first and second transition components are formed to include an attachment feature enabling the transition assembly to be attached to the turbine rotor or disk.

  3. Target Assembly Facility

    Data.gov (United States)

    Federal Laboratory Consortium — The Target Assembly Facility integrates new armor concepts into actual armored vehicles. Featuring the capability ofmachining and cutting radioactive materials, it...

  4. EFFICACY OF MODIFIED MULTICOMPONENT SYSTEM “1C: ENTERPRISE” IMPLEMENTATION

    Directory of Open Access Journals (Sweden)

    A. A. Modestov

    2016-01-01

    Full Text Available Background: Automated accounting and controlling system “1C: Enterprise” is widely used in Russia for optimizing the system of controlling materials and technical resources. Medical organizations modify them in line with their primary activity objectives. For many years, the Scientific Center of Children’s Health has been successfully using a 1C-based medical information system including electronic patient records. An innovative product — an additional block for accounting equipment and supplies (E&S — was developed in 2014.Objective: Our aim was to conduct a sociological analysis of results of the first stage of modified multicomponent system “1C: Enterprise” implementation.Methods: The cross-sectional full-design study was conducted from October 2014 to June 2015. We used the analytical method, the opinion poll method and the expert method. We developed a special questionnaire for the purposes of the poll. We assessed opinions of clinic employees, departments and services indirectly or directly working with the system.Results: The study results demonstrate that multifunctional and adapted towards peculiarities of activities of the Scientific Center of Children’s Health system “1C: Enterprise” provides more efficient control over the use of drugs, expendables and other E&S in patient terms. It also allows simplifying and automatizing operation of the E&S accounting system by the employees and generating financial statements for a given period in terms of patient/department/clinic. At the same time, the poll revealed problematic technical, informational and motivational aspects. This is confirmed by the degree of involvement/personal interest of employees in the end result, as well as by the priorities of motivation for quality work.Conclusion: Analysis of attitude of accountable persons to the modification of accounting policy of the Scientific Center of Children’s Health served as the basis for developing measures of

  5. Analysis of phase formation in multi-component alloys

    Energy Technology Data Exchange (ETDEWEB)

    Raghavan, R.; Hari Kumar, K.C. [Department of Metallurgical and Materials Engineering, Indian Institute of Technology Madras, Chennai (India); Murty, B.S., E-mail: murty@iitm.ac.in [Department of Metallurgical and Materials Engineering, Indian Institute of Technology Madras, Chennai (India)

    2012-12-15

    Highlights: Black-Right-Pointing-Pointer CALPHAD approach appears to predict BCC phase formation more accurately than FCC phase formation. Black-Right-Pointing-Pointer Solid solution is favored when the {Delta}S{sub config}/{Delta}S{sub fusion} > 1 for equiatomic alloys. Black-Right-Pointing-Pointer Solid solution is favored when the {Delta}S{sub config}/{Delta}S{sub fusion} > 1.2 for non-equiatomic alloys. Black-Right-Pointing-Pointer BCC phase is favored when atomic size difference is larger, as reflected by a higher value of {Delta}S{sub {sigma}}/k. Black-Right-Pointing-Pointer FCC and BCC phase formation appears to be governed mainly by {Delta}H{sub mix} and {Delta}S{sub {sigma}}/k, respectively. - Abstract: An attempt has been made to predict phase formation using a CALPHAD-based approach for a large number of compositions that are known to form FCC, BCC and a mixture of FCC and BCC phases. The stable phase is assumed to be the first phase that is formed upon cooling from liquid state with the highest driving force. The driving force for other phases at the transition for various compositions is also presented. A comparison between the parametric approach of phase prediction by study of thermodynamic and topological parameters on one hand and the CALPHAD approach on the other is also presented. CALPHAD approach appears to predict BCC phase formation much more accurately than the FCC phase formation. The results indicate that solid solution formation in multicomponent alloys is favored when the ratio of {Delta}S{sub config}/{Delta}S{sub fusion} is greater than 1 and 1.2 for equiatomic and non-equiatomic alloys, respectively. The results also point out that BCC phase is favored when the atomic size difference is larger, which is reflected by a higher value of {Delta}S{sub {sigma}}/k. Formation of FCC phase appears to be governed mainly by {Delta}H{sub mix}, while BCC phase governed by {Delta}S{sub {sigma}}/k, which is representative of strain in the structure.

  6. Expanding Conventional Seismic Stratigrphy into the Multicomponent Seismic Domain

    Energy Technology Data Exchange (ETDEWEB)

    Innocent Aluka

    2008-08-31

    Multicomponent seismic data are composed of three independent vector-based seismic wave modes. These wave modes are, compressional mode (P), and shear modes SV and SH. The three modes are generated using three orthogonal source-displacement vectors and then recorded using three orthogonal vector sensors. The components travel through the earth at differing velocities and directions. The velocities of SH and SV as they travel through the subsurface differ by only a few percent, but the velocities of SV and SH (Vs) are appreciably lower than the P-wave velocity (Vp). The velocity ratio Vp/Vs varies by an order of magnitude in the earth from a value of 15 to 1.5 depending on the degree of sedimentary lithification. The data used in this study were acquired by nine-component (9C) vertical seismic profile (VSP), using three orthogonal vector sources. The 9C vertical seismic profile is capable of generating P-wave mode and the fundamental S-wave mode (SH-SH and SV-SV) directly at the source station and permits the basic components of elastic wavefield (P, SH-SH and SV-SV) to be separated from one another for the purposes of imaging. Analysis and interpretations of data from the study area show that incident full-elastic seismic wavefield is capable of reflecting four different wave modes, P, SH , SV and C which can be utilized to fully understand the architecture and heterogeneities of geologic sequences. The conventional seismic stratigraphy utilizes only reflected P-wave modes. The notation SH mode is the same as SH-SH; SV mode means SV-SV and C mode which is a converted shear wave is a special SV mode and is the same as P-SV. These four wave modes image unique geologic stratigraphy and facies and at the same time reflect independent stratal surfaces because of the unique orientation of their particle-displacement vectors. As a result of the distinct orientation of individual mode's particle-displacement vector, one mode may react to a critical subsurface sequence

  7. Crystallisation mechanism of a multicomponent lithium alumino-silicate glass

    Energy Technology Data Exchange (ETDEWEB)

    Wurth, R. [Otto-Schott-Institut, Jena University, Fraunhoferstr. 6, 07743 Jena (Germany); Pascual, M.J., E-mail: mpascual@icv.csic.es [Instituto de Ceramica y Vidrio, CSIC, Kelsen 5, 28049 Madrid (Spain); Mather, G.C.; Pablos-Martin, A.; Munoz, F.; Duran, A. [Instituto de Ceramica y Vidrio, CSIC, Kelsen 5, 28049 Madrid (Spain); Cuello, G.J. [Institut Laue-Langevin, Boite Postale 156, 38042 Grenoble Cedex 9 (France); Ruessel, C. [Otto-Schott-Institut, Jena University, Fraunhoferstr. 6, 07743 Jena (Germany)

    2012-06-15

    A base glass of composition 3.5 Li{sub 2}O Bullet-Operator 0.15 Na{sub 2}O Bullet-Operator 0.2 K{sub 2}O Bullet-Operator 1.15 MgO Bullet-Operator 0.8 BaO Bullet-Operator 1.5 ZnO Bullet-Operator 20 Al{sub 2}O{sub 3} Bullet-Operator 67.2 SiO{sub 2} Bullet-Operator 2.6 TiO{sub 2} Bullet-Operator 1.7 ZrO{sub 2} Bullet-Operator 1.2 As{sub 2}O{sub 3} (in wt.%), melted and provided by SCHOTT AG (Mainz), was used to study the crystallisation mechanism of lithium alumino-silicate glass employing X-ray diffraction combined with neutron diffraction and non-isothermal differential scanning calorimetry (DSC). A high-quartz solid solution of LiAlSi{sub 2}O{sub 6} with nanoscaled crystals forms at 750 Degree-Sign C. Quantitative Rietveld refinement of samples annealed at 750 Degree-Sign C for 8 h determined a crystallised fraction of around 59 wt.%. The room temperature crystallised phase adopts an ordered, {beta}-eucryptite-like structure (2 Multiplication-Sign 2 Multiplication-Sign 2 cell) with Li ordered in the structural channels. The Avrami parameter (n {approx} 4), calculated from DSC data using different theoretical approaches, indicates that bulk crystallisation occurs and that the number of nuclei increases during annealing. The activation energy of the crystallisation is 531 {+-} 20 kJ mol{sup -1}. - Highlights: Black-Right-Pointing-Pointer Nanoscaled high-quartz crystals from a multicomponent lithium alumino-silicate glass. Black-Right-Pointing-Pointer Combined X-ray and neutron diffraction structural refinement. Black-Right-Pointing-Pointer {beta}-Eucryptite-like structure (2 Multiplication-Sign 2 Multiplication-Sign 2 cell) with Li ordered in the structural channels. Black-Right-Pointing-Pointer 3-Dimensional bulk crystallisation mechanism with an increasing number of nuclei. Black-Right-Pointing-Pointer Usage and validation of an alternative approach to calculate the Avrami parameter.

  8. Multicomponent transport in membranes for redox flow batteries

    Science.gov (United States)

    Monroe, Charles

    2015-03-01

    Redox flow batteries (RFBs) incorporate separator membranes, which ideally prevent mixing of electrochemically active species while permitting crossover of inactive supporting ions. Understanding crossover and membrane selectivity may require multicomponent transport models that account for solute/solute interactions within the membrane, as well as solute/membrane interactions. Application of the Onsager-Stefan-Maxwell formalism allows one to account for all the dissipative phenomena that may accompany component fluxes through RFB membranes. The magnitudes of dissipative interactions (diffusional drag forces) are quantified by matching experimentally established concentration transients with theory. Such transients can be measured non-invasively using DC conductometry, but the accuracy of this method requires precise characterization of the bulk RFB electrolytes. Aqueous solutions containing both vanadyl sulfate (VOSO4) and sulfuric acid (H2SO4) are relevant to RFB technology. One of the first precise characterizations of aqueous vanadyl sulfate has been implemented and will be reported. To assess the viability of a separator for vanadium RFB applications with cell-level simulations, it is critical to understand the tendencies of various classes of membranes to absorb (uptake) active species, and to know the relative rates of active-species and supporting-electrolyte diffusion. It is also of practical interest to investigate the simultaneous diffusion of active species and supports, because interactions between solutes may ultimately affect the charge efficiency and power efficiency of the RFB system as a whole. A novel implementation of Barnes's classical model of dialysis-cell diffusion [Physics 5:1 (1934) 4-8] is developed to measure the binary diffusion coefficients and sorption equilibria for single solutes (VOSO4 or H2SO4) in porous membranes and cation-exchange membranes. With the binary diffusion and uptake measurement in hand, a computer simulation that

  9. Design for robustness of unique, multi-component engineering systems

    Science.gov (United States)

    Shelton, Kenneth A.

    2007-12-01

    The purpose of this research is to advance the science of conceptual designing for robustness in unique, multi-component engineering systems. Robustness is herein defined as the ability of an engineering system to operate within a desired performance range even if the actual configuration has differences from specifications within specified tolerances. These differences are caused by three sources, namely manufacturing errors, system degradation (operational wear and tear), and parts availability. Unique, multi-component engineering systems are defined as systems produced in unique or very small production numbers. They typically have design and manufacturing costs on the order of billions of dollars, and have multiple, competing performance objectives. Design time for these systems must be minimized due to competition, high manpower costs, long manufacturing times, technology obsolescence, and limited available manpower expertise. Most importantly, design mistakes cannot be easily corrected after the systems are operational. For all these reasons, robustness of these systems is absolutely critical. This research examines the space satellite industry in particular. Although inherent robustness assurance is absolutely critical, it is difficult to achieve in practice. The current state of the art for robustness in the industry is to overdesign components and subsystems with redundancy and margin. The shortfall is that it is not known if the added margins were either necessary or sufficient given the risk management preferences of the designer or engineering system customer. To address this shortcoming, new assessment criteria to evaluate robustness in design concepts have been developed. The criteria are comprised of the "Value Distance", addressing manufacturing errors and system degradation, and "Component Distance", addressing parts availability. They are based on an evolutionary computation format that uses a string of alleles to describe the components in the

  10. Extending reference assembly models

    DEFF Research Database (Denmark)

    Church, Deanna M.; Schneider, Valerie A.; Steinberg, Karyn Meltz

    2015-01-01

    The human genome reference assembly is crucial for aligning and analyzing sequence data, and for genome annotation, among other roles. However, the models and analysis assumptions that underlie the current assembly need revising to fully represent human sequence diversity. Improved analysis tools...

  11. Assembly of primary cilia

    DEFF Research Database (Denmark)

    Pedersen, Lotte B; Veland, Iben R; Schrøder, Jacob M

    2008-01-01

    in primary cilia assembly or function have been associated with a panoply of disorders and diseases, including polycystic kidney disease, left-right asymmetry defects, hydrocephalus, and Bardet Biedl Syndrome. Here we provide an up-to-date review focused on the molecular mechanisms involved in the assembly...

  12. Extending reference assembly models

    DEFF Research Database (Denmark)

    Church, Deanna M.; Schneider, Valerie A.; Steinberg, Karyn Meltz;

    2015-01-01

    The human genome reference assembly is crucial for aligning and analyzing sequence data, and for genome annotation, among other roles. However, the models and analysis assumptions that underlie the current assembly need revising to fully represent human sequence diversity. Improved analysis tools...

  13. Perspective: Geometrically frustrated assemblies

    Science.gov (United States)

    Grason, Gregory M.

    2016-09-01

    This perspective will overview an emerging paradigm for self-organized soft materials, geometrically frustrated assemblies, where interactions between self-assembling elements (e.g., particles, macromolecules, proteins) favor local packing motifs that are incompatible with uniform global order in the assembly. This classification applies to a broad range of material assemblies including self-twisting protein filament bundles, amyloid fibers, chiral smectics and membranes, particle-coated droplets, curved protein shells, and phase-separated lipid vesicles. In assemblies, geometric frustration leads to a host of anomalous structural and thermodynamic properties, including heterogeneous and internally stressed equilibrium structures, self-limiting assembly, and topological defects in the equilibrium assembly structures. The purpose of this perspective is to (1) highlight the unifying principles and consequences of geometric frustration in soft matter assemblies; (2) classify the known distinct modes of frustration and review corresponding experimental examples; and (3) describe outstanding questions not yet addressed about the unique properties and behaviors of this broad class of systems.

  14. Laser bottom hole assembly

    Science.gov (United States)

    Underwood, Lance D; Norton, Ryan J; McKay, Ryan P; Mesnard, David R; Fraze, Jason D; Zediker, Mark S; Faircloth, Brian O

    2014-01-14

    There is provided for laser bottom hole assembly for providing a high power laser beam having greater than 5 kW of power for a laser mechanical drilling process to advance a borehole. This assembly utilizes a reverse Moineau motor type power section and provides a self-regulating system that addresses fluid flows relating to motive force, cooling and removal of cuttings.

  15. Assembly: a resource for assembled genomes at NCBI.

    Science.gov (United States)

    Kitts, Paul A; Church, Deanna M; Thibaud-Nissen, Françoise; Choi, Jinna; Hem, Vichet; Sapojnikov, Victor; Smith, Robert G; Tatusova, Tatiana; Xiang, Charlie; Zherikov, Andrey; DiCuccio, Michael; Murphy, Terence D; Pruitt, Kim D; Kimchi, Avi

    2016-01-04

    The NCBI Assembly database (www.ncbi.nlm.nih.gov/assembly/) provides stable accessioning and data tracking for genome assembly data. The model underlying the database can accommodate a range of assembly structures, including sets of unordered contig or scaffold sequences, bacterial genomes consisting of a single complete chromosome, or complex structures such as a human genome with modeled allelic variation. The database provides an assembly accession and version to unambiguously identify the set of sequences that make up a particular version of an assembly, and tracks changes to updated genome assemblies. The Assembly database reports metadata such as assembly names, simple statistical reports of the assembly (number of contigs and scaffolds, contiguity metrics such as contig N50, total sequence length and total gap length) as well as the assembly update history. The Assembly database also tracks the relationship between an assembly submitted to the International Nucleotide Sequence Database Consortium (INSDC) and the assembly represented in the NCBI RefSeq project. Users can find assemblies of interest by querying the Assembly Resource directly or by browsing available assemblies for a particular organism. Links in the Assembly Resource allow users to easily download sequence and annotations for current versions of genome assemblies from the NCBI genomes FTP site.

  16. Self-assembled nanostructures

    CERN Document Server

    Zhang, Jin Z; Liu, Jun; Chen, Shaowei; Liu, Gang-yu

    2003-01-01

    Nanostructures refer to materials that have relevant dimensions on the nanometer length scales and reside in the mesoscopic regime between isolated atoms and molecules in bulk matter. These materials have unique physical properties that are distinctly different from bulk materials. Self-Assembled Nanostructures provides systematic coverage of basic nanomaterials science including materials assembly and synthesis, characterization, and application. Suitable for both beginners and experts, it balances the chemistry aspects of nanomaterials with physical principles. It also highlights nanomaterial-based architectures including assembled or self-assembled systems. Filled with in-depth discussion of important applications of nano-architectures as well as potential applications ranging from physical to chemical and biological systems, Self-Assembled Nanostructures is the essential reference or text for scientists involved with nanostructures.

  17. Constrained space camera assembly

    Science.gov (United States)

    Heckendorn, Frank M.; Anderson, Erin K.; Robinson, Casandra W.; Haynes, Harriet B.

    1999-01-01

    A constrained space camera assembly which is intended to be lowered through a hole into a tank, a borehole or another cavity. The assembly includes a generally cylindrical chamber comprising a head and a body and a wiring-carrying conduit extending from the chamber. Means are included in the chamber for rotating the body about the head without breaking an airtight seal formed therebetween. The assembly may be pressurized and accompanied with a pressure sensing means for sensing if a breach has occurred in the assembly. In one embodiment, two cameras, separated from their respective lenses, are installed on a mounting apparatus disposed in the chamber. The mounting apparatus includes means allowing both longitudinal and lateral movement of the cameras. Moving the cameras longitudinally focuses the cameras, and moving the cameras laterally away from one another effectively converges the cameras so that close objects can be viewed. The assembly further includes means for moving lenses of different magnification forward of the cameras.

  18. Self-Assembled Multi-Component Catenanes: Structural Insights into an Adaptable Class of Molecular Receptors and [2]-Catenanes

    Science.gov (United States)

    2012-06-11

    covalent forces differ from those in water. These complex three-dimensional structures provide a promising scaffold for pre-organization of functional...Das, C.; Naganagowda, G. A.; Karle, I. L.; Balaram, P. Biopolymers 2001, 58, 335−346. (c) Haque, T. S.; Gellman, S. H. J. Am. Chem. Soc. 1997, 119

  19. Copper-Catalyzed Multicomponent Domino Reaction of 2-Bromoaldehydes, Benzylamines, and Sodium Azide for the Assembly of Quinazoline Derivatives.

    Science.gov (United States)

    Xu, Cheng; Jia, Feng-Cheng; Zhou, Zhi-Wen; Zheng, Si-Jie; Li, Han; Wu, An-Xin

    2016-04-01

    An efficient three-component domino reaction of 2-bromoaldehydes, benzylamines, and sodium azide has been developed for the synthesis of quinazoline derivatives. This domino process involves copper-catalyzed SNAr, oxidation/cyclization, and denitrogenation sequences. The mild catalytic system enabled the effective construction of three C-N bonds in one operation.

  20. Evaluation of a Multicomponent Intervention for Diurnal Bruxism in a Young Child with Autism

    Science.gov (United States)

    Barnoy, Emily L.; Najdowski, Adel C.; Tarbox, Jonathan; Wilke, Arthur E.; Nollet, Megan D.

    2009-01-01

    Bruxism, forceful grinding of one's teeth together, can produce destructive outcomes such as wear on the teeth and damaged gums and bone structures. The current study implemented a multicomponent intervention that consisted of vocal and physical cues to decrease rates of bruxism. A partial component analysis suggested that the vocal cue was only…

  1. Using a Multicomponent Function-Based Intervention to Support Students with Attention Deficit Hyperactivity Disorder

    Science.gov (United States)

    Cho, Su-Je; Blair, Kwang-Sun Cho

    2017-01-01

    The current study evaluated the effects of a multicomponent function-based intervention on students with other health impairment (OHI) for attention deficit hyperactivity disorder (ADHD) in a private special education school. The focus of the intervention was to prevent problem behaviors and to increase academic engagement by modifying classroom…

  2. Calculation of noise distribution in mesoscopic dynamics models for phase separation of multicomponent complex fluids

    NARCIS (Netherlands)

    vanVlimmeren, BAC; Fraaije, JGEM

    1996-01-01

    We present a simple method for the numerical calculation of the noise distribution in multicomponent functional Langevin models. The topic is of considerable importance, in view of the increased interest in the application of mesoscopic dynamics simulation models to phase separation of complex

  3. New Exact Solutions of Multi-component mKdV Equation

    Institute of Scientific and Technical Information of China (English)

    YE Cai-Er

    2006-01-01

    In this paper, new Jacobi elliptic function solutions of multi-component mKdV equation are obtained directly in a unified way. When the modulus m →1, those periodic solutions degenerate as the corresponding hyperbolic function solutions. Then, to the three-component mKdV equation, five types of effective solution are presented in detail.

  4. Results of a monitoring pilot with a permanent buried multicomponent seismic array at Ketzin

    NARCIS (Netherlands)

    Arts, R.J.; Meekes, J.A.C.; Brouwer, J.H.; Werf, M. van der; Noorlandt, R.P.; Paap, B.; Visser, W.; Vandeweijer, V.; Lüth, S.; Giese, R.; Maas, J.

    2011-01-01

    To monitor the migration of the injected CO2 in the Ketzin project (Germany) a permanently buried multi-component seismic array has been installed in August 2009. Since then the array has been continuously recording passive seismic data. Additionally an active seismic survey resulting in a 230 m lon

  5. A Review of Multicomponent Interventions to Prevent and Control Tobacco Use among College Students

    Science.gov (United States)

    Rodgers, Kirsten C.

    2012-01-01

    Objective: Multicomponent tobacco control programs have been implemented at the state and community levels and have led to a reduction in tobacco use. The purpose was to review the public health research literature on tobacco prevention and control programs on college campuses and derive evidence-based implications for comprehensive program…

  6. Using a Multicomponent Function-Based Intervention to Support Students with Attention Deficit Hyperactivity Disorder

    Science.gov (United States)

    Cho, Su-Je; Blair, Kwang-Sun Cho

    2017-01-01

    The current study evaluated the effects of a multicomponent function-based intervention on students with other health impairment (OHI) for attention deficit hyperactivity disorder (ADHD) in a private special education school. The focus of the intervention was to prevent problem behaviors and to increase academic engagement by modifying classroom…

  7. Evaluation of a Multicomponent Online Communication Professional Development Program for Early Interventionists

    Science.gov (United States)

    Brown, Jennifer A.; Woods, Juliann J.

    2012-01-01

    Collaborative early intervention (EI) service delivery is enhanced by professional development focused on knowledge and skills in the content and process of delivering services. This article describes a multicomponent online professional development course designed to build infant toddler specialists' capacity to support children with…

  8. Study on the Unfrozen Water Quantity of Maximally Freeze-Concentrated Solutions for Multicomponent Lyoprotectants.

    Science.gov (United States)

    Xu, Mengjie; Chen, Guangming; Zhang, Cunhai; Zhang, Shaozhi

    2017-01-01

    The concentration of maximally freeze-concentrated solutions [Formula: see text] and the corresponding glass transition temperature [Formula: see text] and ante-melting temperature [Formula: see text] of lyoprotectant solutions, are critical parameters for developing lyophilization process. Usually, the lyoprotectant solutions are multicomponent solutions composed of electrolytes, sugars, proteins, polymers, and other chemicals. In this article, the Wg(') values of several multicomponent solutions including trehalose/NaCl, bovine serum albumin/NaCl, and hydroxyethyl starch/NaCl with water were determined by differential scanning calorimetry. A linear relationship between the unfrozen water fraction Wun and the initial solute concentrations Wi was found: Wun = ∑(ai·Wi), which suggested that in the multicomponent solutions each solute could hydrate a certain amount of water ai (g water/g solute) that could not be frozen. The hypothesis was compared with more literature data. For the same solute in different solutions, variation in the fitted coefficient ai is noticed and discussed. If a "universal" value ai for each solute is adopted, both [Formula: see text] and [Formula: see text] for a multicomponent solution could be predicted if Couchman-Karasz equation is adopted for calculating glass transition temperature at the same time. The prediction discrepancies for [Formula: see text] with experimental data were less than 2°C. The finding is discussed about its molecular basis and applicability. Copyright © 2016 American Pharmacists Association®. Published by Elsevier Inc. All rights reserved.

  9. New macrocycles with potent antituberculosis activity accessed by one-pot multicomponent reactions

    NARCIS (Netherlands)

    Kim, D.; Huang, Y.; Wang, K.; Doemling, A.

    Based on modeling studies, we hypothesized that tylosin derivatives without formyl group should rather adopt an erythromycin-like binding mode to the ribosome. Twenty four 16-membered macrocyclic compounds were accessed by multicomponent reactions (Gewald, Ugi) of tylosin and investigated for their

  10. Comparison of macro- and microscopic theories describing multicomponent mass transport in microporous media

    NARCIS (Netherlands)

    Benes, Nieck Edwin; Verweij, H.

    2000-01-01

    A detailed discussion is presented of three well-known macroscopic theories for describing the mass transport behavior of multicomponent mixtures; these include Fick's law, the Onsager theory of irreversible thermodynamics, and the Maxwell-Stefan theory. The merits and drawbacks of these theories ar

  11. Full 3-dimensional digital workflow for multicomponent dental appliances A proof of concept

    NARCIS (Netherlands)

    Meer, van der Joerd; Vissink, Arjan; Ren, Yijin

    Background. The authors used a 3-dimensional (3D) printer and a bending robot to produce a multicomponent dental appliance to assess whether 3D digital models of the dentition are applicable for a full digital workflow. Methods. The authors scanned a volunteer's dentition with an intraoral scanner

  12. Equilibrium structure of the multi-component screened charged hard-sphere fluid.

    Science.gov (United States)

    Sánchez-Díaz, Luis E; Mendez-Maldonado, Gloria A; González-Melchor, Minerva; Ruiz-Estrada, Honorina; Medina-Noyola, Magdaleno

    2011-07-07

    The generalized mean spherical approximation of the structural properties of the binary charge-symmetric fluid of screened charged hard-spheres of the same diameter, i.e., the screened restricted primitive model, is extended to include binary charge-asymmetric and multi-component fluids. Molecular dynamics simulation data are generated to assess the accuracy of the corresponding theoretical predictions.

  13. Multicomponent Program to Reduce Functional Decline in Frail Elderly People : A Cluster Controlled Trial

    NARCIS (Netherlands)

    Ruikes, Franca G. H.; Zuidema, Sytse U.; Akkermans, Reinier P.; Assendelft, Willem J. J.; Schers, Henk J.; Koopmans, Raymond T. C. M.

    2016-01-01

    Background: The increasing number of community-dwelling frail elderly people poses a challenge to general practice. We evaluated the effectiveness of a general practitioner-led extensive, multicomponent program integrating cure, care, and welfare for the prevention of functional decline. Methods: We

  14. Fast-projectile stopping power of quantal multicomponent strongly coupled plasmas.

    Science.gov (United States)

    Ballester, D; Tkachenko, I M

    2008-08-15

    The Bethe-Larkin formula for the fast-projectile stopping power is extended to multicomponent plasmas. The results are to contribute to the correct interpretation of the experimental data, which could permit us to test existing and future models of thermodynamic, static, and dynamic characteristics of strongly coupled Coulomb systems.

  15. Measuring free metal ion concentrations in multicomponent solutions using Donnan Membrane Technique

    NARCIS (Netherlands)

    Kalis, E.J.J.; Temminghoff, E.J.M.; Weng, L.P.; Riemsdijk, van W.H.

    2007-01-01

    Among speciation techniques that are able to measure free metal ion concentrations, the Donnan membrane technique (DMT) has the advantage that it can measure many different free metal ion concentrations simultaneously in a multicomponent sample. Even though the DMT has been applied to several system

  16. OPTIMIZATION OF MULTICOMPONENT PERVAPORATION FOR REMOVAL OF VOLATILE ORGANIC COMPOUNDS FROM WATER

    Science.gov (United States)

    Optimal operation of a hollow fiber membrane module for pervaporative removal of multicomponent volatile organic compounds (VOCs) from wastewater was studied. A shell-and-tube heat-exchange type of hollow fiber module was considered for treatment of a wastewater containing toluen...

  17. Measurement of the acoustic-to-optical phonon coupling in multicomponent systems

    NARCIS (Netherlands)

    Caretta, Antonio; Donker, Michiel C.; Perdok, Diederik W.; Abbaszadeh, Davood; Polyakov, Alexey O.; Havenith, Remco W. A.; Palstra, Thomas T. M.; van Loosdrecht, Paul H. M.

    2015-01-01

    In this paper we investigate the acoustic-to-optical up-conversion phonon processes in a multicomponent system. These processes take place during heat transport and limit the efficiency of heat flow. By combining time-resolved optical and heat capacity experiments we quantify the thermal coupling co

  18. Consecutive One-Pot versus Domino Multicomponent Approaches to 3-(Diarylmethylene)oxindoles.

    Science.gov (United States)

    Park, Sunhwa; Lee, Jiyun; Shin, Kye Jung; Oh, Euichaul; Seo, Jae Hong

    2017-03-22

    Based on consecutive one-pot conditions combining three palladium-catalyzed reactions (Sonogashira, Heck and Suzuki-Miyaura reactions), a more efficient domino multicomponent method has been successfully developed to access a wide variety of 3-(diarylmethylene)oxindoles. Microwave irradiation and use of a silver salt were the most important factors to achieve high yields and stereoselectivity.

  19. The Effects of a Multi-Component Intervention on Preschool Children's Literacy Skills

    Science.gov (United States)

    Dennis, Lindsay R.

    2016-01-01

    This study examined the effects of a multi-component intervention program (i.e., extended instruction and iPad app technology) on preschool children's vocabulary. Instruction utilizing the intervention program was provided across 6 storybooks, 4 verbs per book, for a total of 24 verbs. Dependent variables included expressive vocabulary,…

  20. Numerical Simulation of Transport Phenomena in Solidification of Multicomponent Ingot Using a Continuum Model

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    A continuum model proposed for dendrite solidification of multicomponent alloys, with any partial solid back diffusion, was used to numerically simulate the macroscopic solidification transport phenomena and macrosegregations in an upwards directionally solidified plain carbon steel ingot. The computational results of each macroscopic field of the physical variables involved in the solidification process at a middle solidification stage were presented.

  1. Lattice Boltzmann based multicomponent reactive transport model coupled with geochemical solver for scale simulations

    NARCIS (Netherlands)

    Patel, R.A.; Perko, J.; Jaques, D.; De Schutter, G.; Ye, G.; Van Breugel, K.

    2013-01-01

    A Lattice Boltzmann (LB) based reactive transport model intended to capture reactions and solid phase changes occurring at the pore scale is presented. The proposed approach uses LB method to compute multi component mass transport. The LB multi-component transport model is then coupled with the well

  2. Thermodynamics of the multicomponent vapor-liquid equilibrium under capillary pressure difference

    DEFF Research Database (Denmark)

    Shapiro, Alexander; Stenby, Erling Halfdan

    2001-01-01

    , not for the multicomponent mixtures. The importance is emphasized on the space of the intensive variables P, T and mu (i), where the laws of capillary equilibrium have a simple geometrical interpretation. We formulate thermodynamic problems specific to such an equilibrium, and outline changes to be introduced to common...

  3. TECHNIQUE FOR DETERMINING THE MULTICOMPONENT GEOPHONE ORIENTATION ON A SEISMIC LINE

    OpenAIRE

    2011-01-01

    Technique for determining the multicomponent geophone orientation on a seismic line is considered in the report. This technique allowed correcting the components orientation. Methodical and instrumental imperfections of field measurements were also detected in the course of research. Taking these into account may allow avoiding the errors in further data processing.

  4. New macrocycles with potent antituberculosis activity accessed by one-pot multicomponent reactions

    NARCIS (Netherlands)

    Kim, D.; Huang, Y.; Wang, K.; Doemling, A.

    2013-01-01

    Based on modeling studies, we hypothesized that tylosin derivatives without formyl group should rather adopt an erythromycin-like binding mode to the ribosome. Twenty four 16-membered macrocyclic compounds were accessed by multicomponent reactions (Gewald, Ugi) of tylosin and investigated for their

  5. Development and application of novel multicomponent reactions using (a)alfa-acidic isocyanides

    NARCIS (Netherlands)

    Bon, R.S.

    2007-01-01

    The research described in this thesis deals with: i) the exploitation of the a-acidity of isocyanides in the development of new multicomponent reactions; ii) the application of such MCRs for the synthesis of NHC complexes; and iii) the C–2 functionalisation of 2 imidazolines as a route towards libr

  6. The Effects of a Multi-Component Intervention on Preschool Children's Literacy Skills

    Science.gov (United States)

    Dennis, Lindsay R.

    2016-01-01

    This study examined the effects of a multi-component intervention program (i.e., extended instruction and iPad app technology) on preschool children's vocabulary. Instruction utilizing the intervention program was provided across 6 storybooks, 4 verbs per book, for a total of 24 verbs. Dependent variables included expressive vocabulary,…

  7. Full 3-dimensional digital workflow for multicomponent dental appliances A proof of concept

    NARCIS (Netherlands)

    Meer, van der Joerd; Vissink, Arjan; Ren, Yijin

    2016-01-01

    Background. The authors used a 3-dimensional (3D) printer and a bending robot to produce a multicomponent dental appliance to assess whether 3D digital models of the dentition are applicable for a full digital workflow. Methods. The authors scanned a volunteer's dentition with an intraoral scanner (

  8. DNS of moderate-temperature gaseous mixing layers laden with multicomponent-fuel drops

    Science.gov (United States)

    Clercq, P. C. Le; Bellan, J.

    2004-01-01

    A formulation representing multicomponent-fuel (MC-fuel) composition as a Probability Distribution Function (PDF) depending on the molar weight is used to construct a model of a large number of MC-fuel drops evaporating in a gas flow, so as to assess the extent of fuel specificity on the vapor composition.

  9. The thermal characterization of multi-component systems by enthalpy relaxation

    NARCIS (Netherlands)

    Brinke, Gerrit ten; Oudhuis, Lizette; Ellis, Thomas S.

    1994-01-01

    The phenomenon of enthalpy relaxation of amorphous glassy polymers has been developed into an analytical tool which can be applied to elucidate phase behavior and morphologically related phenomena of multi-component systems. We have both reviewed the experimental details concerning its application,

  10. Multicomponent Program to Reduce Functional Decline in Frail Elderly People : A Cluster Controlled Trial

    NARCIS (Netherlands)

    Ruikes, Franca G. H.; Zuidema, Sytse U.; Akkermans, Reinier P.; Assendelft, Willem J. J.; Schers, Henk J.; Koopmans, Raymond T. C. M.

    2016-01-01

    Background: The increasing number of community-dwelling frail elderly people poses a challenge to general practice. We evaluated the effectiveness of a general practitioner-led extensive, multicomponent program integrating cure, care, and welfare for the prevention of functional decline. Methods: We

  11. Vadose zone attenuation of organic compounds at a crude oil spill site - Interactions between biogeochemical reactions and multicomponent gas transport

    Science.gov (United States)

    Molins, S.; Mayer, K.U.; Amos, R.T.; Bekins, B.A.

    2010-01-01

    Contaminant attenuation processes in the vadose zone of a crude oil spill site near Bemidji, MN have been simulated with a reactive transport model that includes multicomponent gas transport, solute transport, and the most relevant biogeochemical reactions. Dissolution and volatilization of oil components, their aerobic and anaerobic degradation coupled with sequential electron acceptor consumption, ingress of atmospheric O2, and the release of CH4 and CO2 from the smear zone generated by the floating oil were considered. The focus of the simulations was to assess the dynamics between biodegradation and gas transport processes in the vadose zone, to evaluate the rates and contributions of different electron accepting processes towards vadose zone natural attenuation, and to provide an estimate of the historical mass loss. Concentration distributions of reactive (O2, CH4, and CO2) and non-reactive (Ar and N2) gases served as key constraints for the model calibration. Simulation results confirm that as of 2007, the main degradation pathway can be attributed to methanogenic degradation of organic compounds in the smear zone and the vadose zone resulting in a contaminant plume dominated by high CH4 concentrations. In accordance with field observations, zones of volatilization and CH4 generation are correlated to slightly elevated total gas pressures and low partial pressures of N2 and Ar, while zones of aerobic CH4 oxidation are characterized by slightly reduced gas pressures and elevated concentrations of N2 and Ar. Diffusion is the most significant transport mechanism for gases in the vadose zone; however, the simulations also indicate that, despite very small pressure gradients, advection contributes up to 15% towards the net flux of CH4, and to a more limited extent to O2 ingress. Model calibration strongly suggests that transfer of biogenically generated gases from the smear zone provides a major control on vadose zone gas distributions and vadose zone carbon

  12. Topics in multi-component ultracold gases and gauge fields

    Science.gov (United States)

    Ozawa, Tomoki

    In this thesis, we present theoretical studies on three topics related to multi-component ultracold gases and gauge fields. The first topic that we discuss is artificial gauge fields in ultracold gases. Recently, methods to create artificial gauge fields coupled to neutral ultracold systems using a light-induced Berry's connection have been rapidly developing. These methods are not only capable of creating Abelian gauge fields, such as a conventional magnetic field, but also non-Abelian gauge fields, which opens a way to explore and simulate a wide variety of physical models. In this thesis, we discuss various properties of bosons with Rashba-Dresselhaus spin-orbit coupling, which is a special type of non-Abelian gauge field. We investigate the stability of Bose-Einstein condensates with Rashba-Dresselhaus spin-orbit coupling, and show that the condensates are stable against quantum and thermal fluctuations. We also consider the renormalization of the bare interaction by calculating the t-matrix and its consequence on the ground state phase diagrams. The second topic discussed here is three-component ultracold fermionic systems. It is known that ferromagnetism and superfluidity can coexist at low enough temperature in three-component ultracold fermions. In this thesis, we elucidate how fermionic pairing and population imbalance enhance each other. We also describe a crossover from Bardeen-Cooper-Schrieffer state of fermionic pairing state to the limit of Bose-Einstein condensate of three weakly interacting species of molecules, as the interaction increases. Furthermore, we find an interesting similarity in the free energies between three-component ultracold fermions and quantum chromodynamics. The last topic discussed here is Niels Bohr's double-slit interference gedankenexperiment with charged particles, which argues that the consistency of elementary quantum mechanics requires that the electromagnetic field must be quantized. In the experiment a particle's path

  13. Reconfigurable self-assembly through chiral control of interfacial tension.

    Science.gov (United States)

    Gibaud, Thomas; Barry, Edward; Zakhary, Mark J; Henglin, Mir; Ward, Andrew; Yang, Yasheng; Berciu, Cristina; Oldenbourg, Rudolf; Hagan, Michael F; Nicastro, Daniela; Meyer, Robert B; Dogic, Zvonimir

    2012-01-04

    From determining the optical properties of simple molecular crystals to establishing the preferred handedness in highly complex vertebrates, molecular chirality profoundly influences the structural, mechanical and optical properties of both synthetic and biological matter on macroscopic length scales. In soft materials such as amphiphilic lipids and liquid crystals, the competition between local chiral interactions and global constraints imposed by the geometry of the self-assembled structures leads to frustration and the assembly of unique materials. An example of particular interest is smectic liquid crystals, where the two-dimensional layered geometry cannot support twist and chirality is consequently expelled to the edges in a manner analogous to the expulsion of a magnetic field from superconductors. Here we demonstrate a consequence of this geometric frustration that leads to a new design principle for the assembly of chiral molecules. Using a model system of colloidal membranes, we show that molecular chirality can control the interfacial tension, an important property of multi-component mixtures. This suggests an analogy between chiral twist, which is expelled to the edges of two-dimensional membranes, and amphiphilic surfactants, which are expelled to oil-water interfaces. As with surfactants, chiral control of interfacial tension drives the formation of many polymorphic assemblages such as twisted ribbons with linear and circular topologies, starfish membranes, and double and triple helices. Tuning molecular chirality in situ allows dynamical control of line tension, which powers polymorphic transitions between various chiral structures. These findings outline a general strategy for the assembly of reconfigurable chiral materials that can easily be moved, stretched, attached to one another and transformed between multiple conformational states, thus allowing precise assembly and nanosculpting of highly dynamical and designable materials with complex

  14. Molecular pathways

    DEFF Research Database (Denmark)

    Cox, Thomas R; Erler, Janine Terra

    2014-01-01

    that 45% of deaths in the developed world are linked to fibrotic disease. Fibrosis and cancer are known to be inextricably linked; however, we are only just beginning to understand the common and overlapping molecular pathways between the two. Here, we discuss what is known about the intersection...... of fibrosis and cancer, with a focus on cancer metastasis, and highlight some of the exciting new potential clinical targets that are emerging from analysis of the molecular pathways associated with these two devastating diseases. Clin Cancer Res; 20(14); 3637-43. ©2014 AACR....

  15. School Based Multicomponent Intervention for Obese Children in Udupi District, South India - A Randomized Controlled Trial.

    Science.gov (United States)

    Nayak, Baby S; Bhat, Vinod H

    2016-12-01

    Childhood obesity and overweight is a global epidemics and has been increasing in the developing countries. Childhood obesity is linked with increased mortality and morbidity independent of adult obesity. Declining physical activity, access to junk food and parenting style are the major determinants of overweight in children. Thus, there is a need for increasing the physical activity of children, educating the parents as well as the children on lifestyle modification. This can be achieved through implementation of multicomponent intervention. To evaluate the effectiveness of multicomponent intervention on improving the lifestyle practices, reducing the body fat and improving the self esteem of obese children from selected schools of Udupi District, South India. A sample of 120 obese children were enrolled for multicomponent intervention. The components of multicomponent intervention were: education provided to the obese children on lifestyle modification, education of the parents and increasing the physical education activity of these children in the form of aerobics under the supervision of physical education teacher. There was an attrition of 25% in the intervention group. Thus the final sample in the intervention group was 90. Total sample of 131 overweight/ obese children enrolled as controls. There was an attrition of 20.61% in the control group. Thus, the final sample in the control group was 104. Intervention group received the multicomponent intervention for six month. Mixed Method Repeated measures Ananlysis of Variance (ANOVA) was applied for analysis of data. Results indicated that the intervention was effective in reducing the Body Mass Index (BMI), triceps, biceps, subscapular skin fold thickness of obese children. The intervention was also effective in improving the lifestyle practices and self-esteem of obese children. Overweight/obese children need to control diet and perform vigorous exercise at least for 20 minutes a day to reduce the excess fat

  16. The norepinephrine system and its relevance for multi-component behavior.

    Science.gov (United States)

    Mückschel, Moritz; Gohil, Krutika; Ziemssen, Tjalf; Beste, Christian

    2017-02-01

    The ability to execute several actions in a specific temporal order to achieve an overarching goal, a process often termed action cascading or multi-component behavior, is essential for everyday life requirements. We are only at the beginning to understand the neurobiological mechanisms important for these cognitive processes. However, it is likely that the locus coeruleus-norepinephrine (LC-NE) system may be of importance. In the current study we examine the relevance of the LC-NE system for action cascading processes using a system neurophysiological approach combining high-density EEG recordings and source localization to analyze event-related potentials (ERPs) with recordings of pupil diameter as a proximate of LC-NE system activity. N=25 healthy participants performed an action cascading stop-change paradigm. Integrating ERPs and pupil diameter using Pearson correlations, the results show that the LC-NE system is important for processes related to multi-component behavior. However, the LC-NE system does not seem to be important during the time period of response selection processes during multi-component behavior (reflected in the P3) as well as during perceptual and attentional selection (P1 and N1 ERPs). Rather, it seems that the neurophysiological processes in the fore period of a possibly upcoming imperative stimulus to initiate multi-component behavior are correlated with the LC-NE system. It seems that the LC-NE system facilitates responses to task-relevant processes and supports task-related decision and response selection processes by preparing cognitive control processes in case these are required during multi-component behavior rather than modulating these processes once they are operating. Copyright © 2016 Elsevier Inc. All rights reserved.

  17. Dynamic nanoparticle assemblies.

    Science.gov (United States)

    Wang, Libing; Xu, Liguang; Kuang, Hua; Xu, Chuanlai; Kotov, Nicholas A

    2012-11-20

    Although nanoparticle (NP) assemblies are at the beginning of their development, their unique geometrical shapes and media-responsive optical, electronic, and magnetic properties have attracted significant interest. Nanoscale assembly bridges multiple levels of hierarchy of materials: individual nanoparticles, discrete molecule-like or virus-like nanoscale agglomerates, microscale devices, and macroscale materials. The capacity to self-assemble can greatly facilitate the integration of nanotechnology with other technologies and, in particular, with microscale fabrication. In this Account, we describe developments in the emerging field of dynamic NP assemblies, which are spontaneously form superstructures containing more than two inorganic nanoscale particles that display the ability to change their geometrical, physical, chemical, and other attributes. In many ways, dynamic assemblies can represent a bottleneck in the "bottom-up" fabrication of NP-based devices because they can produce a much greater variety of assemblies, but they also provide a convenient tool for variation of geometries and dimensions of nanoparticle assemblies. Superstructures of NPs (and those held together by similar intrinsic forces)are classified into two groups: Class 1 where media and external fields can alter shape, conformation, and order of stable super structures with a nearly constant number of NPs or Class 2 where the total number of NPs changes, while the organizational motif in the final superstructure remains the same. The future development of successful dynamic assemblies requires understanding the equilibrium in dynamic NP systems. The dynamic nature of Class 1 assemblies is associated with the equilibrium between different conformations of a superstructure and is comparable to the isomerization in classical chemistry. Class 2 assemblies involve the formation or breakage of linkages between the NPs, which is analogous to the classical chemical equilibrium for the formation of

  18. Modeling multicomponent ionic transport in groundwater with IPhreeqc coupling: Electrostatic interactions and geochemical reactions in homogeneous and heterogeneous domains

    DEFF Research Database (Denmark)

    Muniruzzaman, Muhammad; Rolle, Massimo

    2016-01-01

    The key role of small-scale processes like molecular diffusion and electrochemical migration has been increasingly recognized in multicomponent reactive transport in saturated porous media. In this study, we propose a two-dimensional multicomponent reactive transport model taking into account...... the electrostatic interactions during transport of charged ions in physically and chemically heterogeneous porous media. The modeling approach is based on the local charge balance and on the description of compound-specific and spatially variable diffusive/dispersive fluxes. The multicomponent ionic transport code...

  19. DC source assemblies

    Science.gov (United States)

    Campbell, Jeremy B; Newson, Steve

    2013-02-26

    Embodiments of DC source assemblies of power inverter systems of the type suitable for deployment in a vehicle having an electrically grounded chassis are provided. An embodiment of a DC source assembly comprises a housing, a DC source disposed within the housing, a first terminal, and a second terminal. The DC source also comprises a first capacitor having a first electrode electrically coupled to the housing, and a second electrode electrically coupled to the first terminal. The DC source assembly further comprises a second capacitor having a first electrode electrically coupled to the housing, and a second electrode electrically coupled to the second terminal.

  20. Modular assembled space telescope

    Science.gov (United States)

    Feinberg, Lee D.; Budinoff, Jason; MacEwen, Howard; Matthews, Gary; Postman, Marc

    2013-09-01

    We present a new approach to building a modular segmented space telescope that greatly leverages the heritage of the Hubble Space Telescope and the James Webb Space Telescope. The modular design in which mirror segments are assembled into identical panels allows for economies of scale and for efficient space assembly that make a 20-m aperture approach cost effective. This assembly approach can leverage NASA's future capabilities and has the power to excite the public's imagination. We discuss the science drivers, basic architecture, technology, and leveraged NASA infrastructure, concluding with a proposed plan for going forward.

  1. Selective self-assembly of adenine-silver nanoparticles forms rings resembling the size of cells

    Science.gov (United States)

    Choi, Sungmoon; Park, Soonyoung; Yang, Seon-Ah; Jeong, Yujin; Yu, Junhua

    2015-01-01

    Self-assembly has played critical roles in the construction of functional nanomaterials. However, the structure of the macroscale multicomponent materials built by the self-assembly of nanoscale building blocks is hard to predict due to multiple intermolecular interactions of great complexity. Evaporation of solvents is usually an important approach to induce kinetically stable assemblies of building blocks with a large-scale specific arrangement. During such a deweting process, we tried to monitor the possible interactions between silver nanoparticles and nucleobases at a larger scale by epifluorescence microscopy, thanks to the doping of silver nanoparticles with luminescent silver nanodots. ssDNA oligomer-stabilized silver nanoparticles and adenine self-assemble to form ring-like compartments similar to the size of modern cells. However, the silver ions only dismantle the self-assembly of adenine. The rings are thermodynamically stable as the drying process only enrich the nanoparticles-nucleobase mixture to a concentration that activates the self-assembly. The permeable membrane-like edge of the ring is composed of adenine filaments glued together by silver nanoparticles. Interestingly, chemicals are partially confined and accumulated inside the ring, suggesting that this might be used as a microreactor to speed up chemical reactions during a dewetting process. PMID:26643504

  2. Developmental self-assembly of a DNA tetrahedron.

    Science.gov (United States)

    Sadowski, John P; Calvert, Colby R; Zhang, David Yu; Pierce, Niles A; Yin, Peng

    2014-04-22

    Kinetically controlled isothermal growth is fundamental to biological development, yet it remains challenging to rationally design molecular systems that self-assemble isothermally into complex geometries via prescribed assembly and disassembly pathways. By exploiting the programmable chemistry of base pairing, sophisticated spatial and temporal control have been demonstrated in DNA self-assembly, but largely as separate pursuits. By integrating temporal with spatial control, here we demonstrate the "developmental" self-assembly of a DNA tetrahedron, where a prescriptive molecular program orchestrates the kinetic pathways by which DNA molecules isothermally self-assemble into a well-defined three-dimensional wireframe geometry. In this reaction, nine DNA reactants initially coexist metastably, but upon catalysis by a DNA initiator molecule, navigate 24 individually characterizable intermediate states via prescribed assembly pathways, organized both in series and in parallel, to arrive at the tetrahedral final product. In contrast to previous work on dynamic DNA nanotechnology, this developmental program coordinates growth of ringed substructures into a three-dimensional wireframe superstructure, taking a step toward the goal of kinetically controlled isothermal growth of complex three-dimensional geometries.

  3. Assembly of β-barrel proteins into bacterial outer membranes.

    Science.gov (United States)

    Selkrig, Joel; Leyton, Denisse L; Webb, Chaille T; Lithgow, Trevor

    2014-08-01

    Membrane proteins with a β-barrel topology are found in the outer membranes of Gram-negative bacteria and in the plastids and mitochondria of eukaryotic cells. The assembly of these membrane proteins depends on a protein folding reaction (to create the barrel) and an insertion reaction (to integrate the barrel within the outer membrane). Experimental approaches using biophysics and biochemistry are detailing the steps in the assembly pathway, while genetics and bioinformatics have revealed a sophisticated production line of cellular components that catalyze the assembly pathway in vivo. This includes the modular BAM complex, several molecular chaperones and the translocation and assembly module (the TAM). Recent screens also suggest that further components of the pathway might remain to be discovered. We review what is known about the process of β-barrel protein assembly into membranes, and the components of the β-barrel assembly machinery. This article is part of a Special Issue entitled: Protein trafficking and secretion in bacteria. Guest Editors: Anastassios Economou and Ross Dalbey.

  4. Designing Assemblies Of Plates

    Science.gov (United States)

    Williams, F. W.; Kennedy, D.; Butler, R.; Aston, G.; Anderson, M. S.

    1992-01-01

    VICONOPT calculates vibrations and instabilities of assemblies of prismatic plates. Designed for efficient, accurate analysis of buckling and vibration, and for optimum design of panels of composite materials. Written in FORTRAN 77.

  5. Self-Organization in Coordination-Driven Self-Assembly

    Science.gov (United States)

    Northrop, Brian H.; Zheng, Yao-Rong; Chi, Ki-Whan; Stang, Peter J.

    2009-01-01

    discrete supramolecular assemblies. In many cases, inputs such as dipolar interactions, steric interactions, and differences in the geometric parameters of subunits—used either alone or as multiple factors simultaneously—can achieve absolute self-organization of discrete supramolecules. We have also observed instances where self-organization is not absolute and varies in its deviation from statistical results. Steric interactions are particularly useful control factors for driving such amplified self-organization because they can be subtly tuned through small structural variations. Having the ability to fully understand and control the self-organization of complex mixtures into specific synthetic supramolecules can provide a better understanding of analogous processes in biological systems. Furthermore, self-organization may allow for the facile synthesis of complex multifunctional, multicomponent systems from simply mixing a collection of much simpler, judiciously designed individual molecular components. PMID:19555073

  6. Self-organization in coordination-driven self-assembly.

    Science.gov (United States)

    Northrop, Brian H; Zheng, Yao-Rong; Chi, Ki-Whan; Stang, Peter J

    2009-10-20

    supramolecular assemblies. In many cases, inputs such as dipolar interactions, steric interactions, and differences in the geometric parameters of subunits, used either alone or as multiple factors simultaneously, can achieve absolute self-organization of discrete supramolecules. We have also observed instances where self-organization is not absolute and varies in its deviation from statistical results. Steric interactions are particularly useful control factors for driving such amplified self-organization because they can be subtly tuned through small structural variations. Having the ability to fully understand and control the self-organization of complex mixtures into specific synthetic supramolecules can provide a better understanding of analogous processes in biological systems. Furthermore, self-organization may allow for the facile synthesis of complex multifunctional, multicomponent systems from simply mixing a collection of much simpler, judiciously designed individual molecular components.

  7. Visualisation in Assembly

    Directory of Open Access Journals (Sweden)

    Václav Štefan

    2016-09-01

    Full Text Available The article is aimed at visualisation types in assembly. Broad usage of artificial visualisation in assembly is held down mainly for economic reasons. One of the possible solutions is usage of the presented light visualisation method. This simple method of light visualisation is convenient when vibration orientation is not working properly and artificial visualisation is economically ineffective. Described principle of orientation is a technical solution of the author.

  8. VIRUS instrument collimator assembly

    Science.gov (United States)

    Marshall, Jennifer L.; DePoy, Darren L.; Prochaska, Travis; Allen, Richard D.; Williams, Patrick; Rheault, Jean-Philippe; Li, Ting; Nagasawa, Daniel Q.; Akers, Christopher; Baker, David; Boster, Emily; Campbell, Caitlin; Cook, Erika; Elder, Alison; Gary, Alex; Glover, Joseph; James, Michael; Martin, Emily; Meador, Will; Mondrik, Nicholas; Rodriguez-Patino, Marisela; Villanueva, Steven; Hill, Gary J.; Tuttle, Sarah; Vattiat, Brian; Lee, Hanshin; Chonis, Taylor S.; Dalton, Gavin B.; Tacon, Mike

    2014-07-01

    The Visual Integral-Field Replicable Unit Spectrograph (VIRUS) instrument is a baseline array 150 identical fiber fed optical spectrographs designed to support observations for the Hobby-Eberly Telescope Dark Energy Experiment (HETDEX). The collimator subassemblies of the instrument have been assembled in a production line and are now complete. Here we review the design choices and assembly practices used to produce a suite of identical low-cost spectrographs in a timely fashion using primarily unskilled labor.

  9. Chromatin Assembly in a Yeast Whole-Cell Extract

    Science.gov (United States)

    Schultz, Michael C.; Hockman, Darren J.; Harkness, Troy A. A.; Garinther, Wendy I.; Altheim, Brent A.

    1997-08-01

    A simple in vitro system that supports chromatin assembly was developed for Saccharomyces cerevisiae. The assembly reaction is ATP-dependent, uses soluble histones and assembly factors, and generates physiologically spaced nucleosomes. We analyze the pathway of histone recruitment into nucleosomes, using this system in combination with genetic methods for the manipulation of yeast. This analysis supports the model of sequential recruitment of H3/H4 tetramers and H2A/H2B dimers into nucleosomes. Using a similar approach, we show that DNA ligase I can play an important role in template repair during assembly. These studies demonstrate the utility of this system for the combined biochemical and genetic analysis of chromatin assembly in yeast.

  10. Assembly of MHC class I molecules within the endoplasmic reticulum.

    Science.gov (United States)

    Zhang, Yinan; Williams, David B

    2006-01-01

    MHC class I molecules bind cytosolically derived peptides within the endoplasmic reticulum (ER) and present them at the cell surface to cytotoxic T cells. A major focus of our laboratory has been to understand the functions of the diverse proteins involved in the intracellular assembly of MHC class I molecules. These include the molecular chaperones calnexin and calreticulin, which enhance the proper folding and subunit assembly of class I molecules and also retain assembly intermediates within the ER; ERp57, a thiol oxidoreductase that promotes heavy chain disulfide formation and proper assembly of the peptide loading complex; tapasin, which recruits class I molecules to the TAP peptide transporter and enhances the loading of high affinity peptide ligands; and Bap31, which is involved in clustering assembled class I molecules at ER exit sites for export along the secretory pathway. This review describes our contributions to elucidating the functions of these proteins; the combined effort of many dedicated students and postdoctoral fellows.

  11. Acentrosomal Microtubule Assembly in Mitosis: The Where, When, and How.

    Science.gov (United States)

    Meunier, Sylvain; Vernos, Isabelle

    2016-02-01

    In mitosis the cell assembles the bipolar spindle, a microtubule (MT)-based apparatus that segregates the duplicated chromosomes into two daughter cells. Most animal cells enter mitosis with duplicated centrosomes that provide an active source of dynamic MTs. However, it is now established that spindle assembly relies on the nucleation of acentrosomal MTs occurring around the chromosomes after nuclear envelope breakdown, and on pre-existing microtubules. Where chromosome-dependent MT nucleation occurs, when MT amplification takes place and how the two pathways function are still key questions that generate some controversies. We reconcile the data and present an integrated model accounting for acentrosomal microtubule assembly in the dividing cell.

  12. Fuel assembly reconstitution

    Energy Technology Data Exchange (ETDEWEB)

    Morgado, Mario M.; Oliveira, Monica G.N.; Ferreira Junior, Decio B.M.; Santos, Barbara O. dos; Santos, Jorge E. dos, E-mail: mongeor@eletronuclear.gov.b [ELETROBRAS Termonuclear S.A. - ELETRONUCLEAR, Angra dos Reis, RJ (Brazil)

    2009-07-01

    Fuel failures have been happened in Nuclear Power Plants worldwide, without lost of integrity and safety, mainly for the public, environment and power plants workers. The most common causes of these events are corrosion (CRUD), fretting and pellet cladding interaction. These failures are identified by increasing the activity of fission products, verified by chemical analyses of reactor coolant. Through these analyses, during the fourth operation cycle of Angra 2 Nuclear Power Plant, was possible to observe fuel failure indication. This indication was confirmed in the end of the cycle during the unloading of reactor core through leakage tests of fuel assembly, using the equipment called 'In Mast Sipping' and 'Box Sipping'. After confirmed, the fuel assembly reconstitution was scheduled, and happened in April, 2007, where was identified the cause and the fuel rod failure, which was substitute by dummy rods (zircaloy). The cause was fretting by 'debris'. The actions to avoid and prevent fuel assemblies failures are important. The goals of this work are to describe the methodology of fuel assembly reconstitution using the FARE (Fuel Assembly Reconstitution Equipment) system, to describe the results of this task in economic and security factors of the company and show how the fuel assembly failures are identified during operation and during the outage. (author)

  13. Polymer Directed Protein Assemblies

    Directory of Open Access Journals (Sweden)

    Patrick van Rijn

    2013-05-01

    Full Text Available Protein aggregation and protein self-assembly is an important occurrence in natural systems, and is in some form or other dictated by biopolymers. Very obvious influences of biopolymers on protein assemblies are, e.g., virus particles. Viruses are a multi-protein assembly of which the morphology is dictated by poly-nucleotides namely RNA or DNA. This “biopolymer” directs the proteins and imposes limitations on the structure like the length or diameter of the particle. Not only do these bionanoparticles use polymer-directed self-assembly, also processes like amyloid formation are in a way a result of directed protein assembly by partial unfolded/misfolded biopolymers namely, polypeptides. The combination of proteins and synthetic polymers, inspired by the natural processes, are therefore regarded as a highly promising area of research. Directed protein assembly is versatile with respect to the possible interactions which brings together the protein and polymer, e.g., electrostatic, v.d. Waals forces or covalent conjugation, and possible combinations are numerous due to the large amounts of different polymers and proteins available. The protein-polymer interacting behavior and overall morphology is envisioned to aid in clarifying protein-protein interactions and are thought to entail some interesting new functions and properties which will ultimately lead to novel bio-hybrid materials.

  14. Effectiveness of a Multi-Component Intervention for Overweight and Obese Children (Nereu Program): A Randomized Controlled Trial

    National Research Council Canada - National Science Library

    Serra-Paya, Noemi; Ensenyat, Assumpta; Castro-Viñuales, Iván; Real, Jordi; Sinfreu-Bergués, Xènia; Zapata, Amalia; Mur, Jose María; Galindo-Ortego, Gisela; Solé-Mir, Eduard; Teixido, Concepció

    2015-01-01

    .... The 8-month study recruited 113 children aged 6 to 12 years with overweight/obesity. Before recruitment, eligible participants were randomly allocated to an intensive, family-based multi-component behavioural intervention (Nereu Program group...

  15. Human Assisted Assembly Processes

    Energy Technology Data Exchange (ETDEWEB)

    CALTON,TERRI L.; PETERS,RALPH R.

    2000-01-01

    Automatic assembly sequencing and visualization tools are valuable in determining the best assembly sequences, but without Human Factors and Figure Models (HFFMs) it is difficult to evaluate or visualize human interaction. In industry, accelerating technological advances and shorter market windows have forced companies to turn to an agile manufacturing paradigm. This trend has promoted computerized automation of product design and manufacturing processes, such as automated assembly planning. However, all automated assembly planning software tools assume that the individual components fly into their assembled configuration and generate what appear to be a perfectly valid operations, but in reality the operations cannot physically be carried out by a human. Similarly, human figure modeling algorithms may indicate that assembly operations are not feasible and consequently force design modifications; however, if they had the capability to quickly generate alternative assembly sequences, they might have identified a feasible solution. To solve this problem HFFMs must be integrated with automated assembly planning to allow engineers to verify that assembly operations are possible and to see ways to make the designs even better. Factories will very likely put humans and robots together in cooperative environments to meet the demands for customized products, for purposes including robotic and automated assembly. For robots to work harmoniously within an integrated environment with humans the robots must have cooperative operational skills. For example, in a human only environment, humans may tolerate collisions with one another if they did not cause much pain. This level of tolerance may or may not apply to robot-human environments. Humans expect that robots will be able to operate and navigate in their environments without collisions or interference. The ability to accomplish this is linked to the sensing capabilities available. Current work in the field of cooperative

  16. Effects of a Multicomponent Exercise Program on Spatiotemporal Gait Parameters, Risk of Falling and Physical Activity in Dementia Patients

    OpenAIRE

    Anaïck Perrochon; Tchalla, Achille E.; Joelle Bonis; Florian Perucaud; Stéphane Mandigout

    2015-01-01

    Background Exercise programs are presumed to rehabilitate gait disorders and to reduce the risk of falling in dementia patients. This study aimed to analyze the specific effects of multicomponent exercise on gait disorders and to determine the association between gait impairments and the risk of falling in dementia patients before and after intervention. Methods We conducted an 8-week multicomponent exercise program in 16 dementia patients (age 86.7 ± 5.4 years). All participants were assesse...

  17. Synchronized assembly of gold nanoparticles driven by a dynamic DNA-fueled molecular machine.

    Science.gov (United States)

    Song, Tingjie; Liang, Haojun

    2012-07-04

    A strategy for gold nanoparticle (AuNP) assembly driven by a dynamic DNA-fueled molecular machine is revealed here. In this machine, the aggregation of DNA-functionalized AuNPs is regulated by a series of toehold-mediated strand displacement reactions of DNA. The aggregation rate of the AuNPs can be regulated by controlling the amount of oligonucleotide catalyst. The versatility of the dynamic DNA-fueled molecular machine in the construction of two-component "OR" and "AND" logic gates has been demonstrated. This newly established strategy may find broad potential applications in terms of building up an "interface" that allows the combination of the strand displacement-based characteristic of DNA with the distinct assembly properties of inorganic nanoparticles, ultimately leading to the fabrication of a wide range of complex multicomponent devices and architectures.

  18. Phase selection rules for complex multi-component alloys with equiatomic or close-to-equiatomic compositions

    Institute of Scientific and Technical Information of China (English)

    GUO Sheng; LIU Chain T.

    2013-01-01

    Alloying greatly expands the amount of available materials beyond the naturally existing ones,and more importantly offers the material scientists opportunities to initiatively control the composition-structure-property relationship in materials.Since commonly used metallic materials are mostly multi-component alloys,the know-how of alloying through compositional control,certainly plays a critical role in designing materials with desired structure and properties.However,alloying in multi-component alloys is an extremely complicated issue,as the alloyed products could be the amorphous phase,various solid solutions and intermetallic compounds containing two or more alloy components.By narrowing down the scope of the multi-component alloys to those with equiatomic or close-to-equiatomic compositions only,and also aiming at framing out the rules that govern the phase selection upon alloying in multi-component alloys in a broad sense,we have identified here a simple and easily executable two-parameter scheme that can effectively predict the formation of the amorphous phase,solid solutions and intermetallic compounds,in multi-component alloys,simply from the given alloy compositions.We believe this scheme reveals a clear physical scenario governing the phase selection in multi-component alloys,helps to simplify the alloy design,and benefits the future development of advanced metallic alloys like bulk metallic glasses and high entropy alloys.

  19. Temporal control of drug release from biodegradable polymer: multicomponent diclofenac sodium releasing PLGA 80/20 rod.

    Science.gov (United States)

    Nikkola, Lila; Viitanen, Petrus; Ashammakhi, Nureddin

    2009-05-01

    In our previous studies we have reported on the development of diclofenac sodium (DS) releasing rods. However, their drug release profiles were unsatisfactory. To enhance the drug release properties of the implant, we have developed a system whereby various elements can be combined into one implant. Melt extruded, self-reinforced (SR), and sterilized (S) DS-containing SR-PLGA 80/20 billets were combined to produce multicomponent implants with various compositions. These components were basically heat pressed together to form multicomponent rods. Drug release from single component and multicomponent rods was defined using a UV-Vis spectrophotometer. DS was released from individual components within 82-111 days and from multicomponent rods within 50-70 days. Thermal properties were analyzed using differential scanning calorimetry (DSC). The melting temperature (T(m)) of multicomponent implants was about 157 degrees C, change in heat fusion (DeltaH) was 13.3 J/g, and the glass transition temperature (T(g)) was 55.4 degrees C. Mechanical strength was measured for 2 weeks and it decreased from 55 to 15 MPa. In conclusion, by compression molding three components with different release rates it is possible to control the temporal release from multicomponent rods. Released DS concentrations were within range for 49-74 days depending on the fractions of individual components used.

  20. Different methods of forming multicomponent metal sulfide by SILAR-techniques

    Science.gov (United States)

    Gavrilov, S.; Zheleznyakova, A.; Dronov, A.; Presnukhina, A.; Popova, E.

    2014-12-01

    The features of the formation of multi-component metal sulfide films (Cu2ZnSnS4 and Cu2SnS3) formed by various methods SILAR technology were studied. Using different investigate methods the comparative analysis of the properties and composition of the films were carry out. The formation of a multi-component film in the mixed cationic solution is accompanied by additional processes in the solution and by the appearance of complex compounds. This factors has a strong influence on the composition and purity of the formed films. The characteristics of the solar cell test structures with ultrathin absorbing layer based on Cu2ZnSnS4 and Cu2SnS3 were obtained. It's necessity to introduce an interlayer and make more carefully study of the composition and interface of the absorber layer.

  1. Derivation of second-order relativistic hydrodynamics for reactive multi-component systems

    CERN Document Server

    Kikuchi, Yuta; Kunihiro, Teiji

    2015-01-01

    We derive the second-order hydrodynamic equation for reactive multi-component systems from the relativistic Boltzmann equation. In the reactive system, particles can change their species under the restriction of the imposed conservation laws during the collision process. Our derivation is based on the renormalization group (RG) method, in which the Boltzmann equation is solved in an organized perturbation method as faithfully as possible and possible secular terms are resummed away by a suitable setting of the initial value of the distribution function. The microscopic formulae of the relaxation times and the lengths are explicitly given as well as those of the transport coefficients for the reactive multi-component system. The resultant hydrodynamic equation with these formulae has nice properties that it satisfies the positivity of the entropy production rate and the Onsager's reciprocal theorem, which ensure the validity of our derivation.

  2. Exposing Differences in Monomer Exchange Rates of Multicomponent Supramolecular Polymers in Water.

    Science.gov (United States)

    Baker, Matthew B; Gosens, Ronald P J; Albertazzi, Lorenzo; Matsumoto, Nicholas M; Palmans, Anja R A; Meijer, E W

    2016-02-02

    The formation of multicomponent and bioactive supramolecular polymers is a promising strategy for the formation of biomaterials that match the dynamic and responsive nature of biological systems. In order to fully realize the potential of this strategy, knowledge of the location and behavior of bioactive components within the system is crucial. By employing synthetic strategies to create multifunctional monomers, coupled with FRET and STORM techniques, we have investigated the formation and behavior of a bioactive and multicomponent supramolecular polymer. By creating a peptide-dye-monomer conjugate, we were able to measure high degrees of monomer incorporation and to visualize the equal distribution of monomers within the supramolecular polymer. Furthermore, by tracking the movement of monomers, we uncovered small differences in the dynamics of the bioactive monomers.

  3. [Impacts of multicomponent environment on solubility of puerarin in biopharmaceutics classification system of Chinese materia medica].

    Science.gov (United States)

    Hou, Cheng-Bo; Wang, Guo-Peng; Zhang, Qiang; Yang, Wen-Ning; Lv, Bei-Ran; Wei, Li; Dong, Ling

    2014-12-01

    To illustrate the solubility involved in biopharmaceutics classification system of Chinese materia medica (CMMBCS) , the influences of artificial multicomponent environment on solubility were investigated in this study. Mathematical model was built to describe the variation trend of their influence on the solubility of puerarin. Carried out with progressive levels, single component environment: baicalin, berberine and glycyrrhizic acid; double-component environment: baicalin and glycyrrhizic acid, baicalin and berberine and glycyrrhizic acid and berberine; and treble-component environment: baicalin, berberin, glycyrrhizic acid were used to describe the variation tendency of their influences on the solubility of puerarin, respectively. And then, the mathematical regression equation model was established to characterize the solubility of puerarin under multicomponent environment.

  4. PCF-based cavity enhanced spectroscopic sensors for simultaneous multicomponent trace gas analysis.

    Science.gov (United States)

    Nakaema, Walter M; Hao, Zuo-Qiang; Rohwetter, Philipp; Wöste, Ludger; Stelmaszczyk, Kamil

    2011-01-01

    A multiwavelength, multicomponent CRDS gas sensor operating on the basis of a compact photonic crystal fibre supercontinuum light source has been constructed. It features a simple design encompassing one radiation source, one cavity and one detection unit (a spectrograph with a fitted ICCD camera) that are common for all wavelengths. Multicomponent detection capability of the device is demonstrated by simultaneous measurements of the absorption spectra of molecular oxygen (spin-forbidden b-X branch) and water vapor (polyads 4v, 4v + δ) in ambient atmospheric air. Issues related to multimodal cavity excitation, as well as to obtaining the best signal-to-noise ratio are discussed together with methods for their practical resolution based on operating the cavity in a "quasi continuum" mode and setting long camera gate widths, respectively. A comprehensive review of multiwavelength CRDS techniques is also given.

  5. Modeling and parametric analysis of hollow fiber membrane system for carbon capture from multicomponent flue gas

    KAUST Repository

    Khalilpour, Rajab

    2011-08-12

    The modeling and optimal design/operation of gas membranes for postcombustion carbon capture (PCC) is presented. A systematic methodology is presented for analysis of membrane systems considering multicomponent flue gas with CO 2 as target component. Simplifying assumptions is avoided by namely multicomponent flue gas represented by CO 2/N 2 binary mixture or considering the co/countercurrent flow pattern of hollow-fiber membrane system as mixed flow. Optimal regions of flue gas pressures and membrane area were found within which a technoeconomical process system design could be carried out. High selectivity was found to not necessarily have notable impact on PCC membrane performance, rather, a medium selectivity combined with medium or high permeance could be more advantageous. © 2011 American Institute of Chemical Engineers (AIChE).

  6. Integrated ultracompact and broadband wavelength demultiplexer based on multi-component nano-cavities.

    Science.gov (United States)

    Lu, Cuicui; Liu, Yong-Chun; Hu, Xiaoyong; Yang, Hong; Gong, Qihuang

    2016-06-06

    Integrated nanoscale photonic devices have wide applications ranging from optical interconnects and optical computing to optical communications. Wavelength demultiplexer is an essential on-chip optical component which can separate the incident wavelength into different channels; however, the experimental progress is very limited. Here, using a multi-component nano-cavity design, we realize an ultracompact, broadband and high-contrast wavelength demultiplexer, with 2.3 μm feature size, 200 nm operation bandwidth (from 780 nm to 980 nm) and a contrast ratio up to 13.7 dB. The physical mechanism is based on the strong modulation of the surface plasmon polaritons induced by the multi-component nano-cavities, and it can be generalized to other nanoscale photonic devices. This provides a strategy for constructing on-chip photon routers, and also has applications for chip-integrated optical filter and optical logic gates.

  7. PCF-Based Cavity Enhanced Spectroscopic Sensors for Simultaneous Multicomponent Trace Gas Analysis

    Directory of Open Access Journals (Sweden)

    Kamil Stelmaszczyk

    2011-01-01

    Full Text Available A multiwavelength, multicomponent CRDS gas sensor operating on the basis of a compact photonic crystal fibre supercontinuum light source has been constructed. It features a simple design encompassing one radiation source, one cavity and one detection unit (a spectrograph with a fitted ICCD camera that are common for all wavelengths. Multicomponent detection capability of the device is demonstrated by simultaneous measurements of the absorption spectra of molecular oxygen (spin-forbidden b-X branch and water vapor (polyads 4v, 4v + d in ambient atmospheric air. Issues related to multimodal cavity excitation, as well as to obtaining the best signal-to-noise ratio are discussed together with methods for their practical resolution based on operating the cavity in a “quasi continuum” mode and setting long camera gate widths, respectively. A comprehensive review of multiwavelength CRDS techniques is also given.

  8. Effect of composition on the density of multi-component molten nitrate salts.

    Energy Technology Data Exchange (ETDEWEB)

    Bradshaw, Robert W.

    2009-12-01

    The density of molten nitrate salts was measured to determine the effects of the constituents on the density of multi-component mixtures. The molten salts consisted of various proportions of the nitrates of potassium, sodium, lithium and calcium. Density measurements ere performed using an Archimedean method and the results were compared to data reported in the literature for the individual constituent salts or simple combinations, such as the binary Solar Salt mixture of NaNO3 and KNO3. The addition of calcium nitrate generally ncreased density, relative to potassium nitrate or sodium nitrate, while lithium nitrate decreased density. The temperature dependence of density is described by a linear equation regardless of composition. The molar volume, and thereby, density of multi-component mixtures an be calculated as a function of temperature using a linear additivity rule based on the properties of the individual constituents.

  9. Methods and Research for Multi-Component Cutting Force Sensing Devices and Approaches in Machining.

    Science.gov (United States)

    Liang, Qiaokang; Zhang, Dan; Wu, Wanneng; Zou, Kunlin

    2016-11-16

    Multi-component cutting force sensing systems in manufacturing processes applied to cutting tools are gradually becoming the most significant monitoring indicator. Their signals have been extensively applied to evaluate the machinability of workpiece materials, predict cutter breakage, estimate cutting tool wear, control machine tool chatter, determine stable machining parameters, and improve surface finish. Robust and effective sensing systems with capability of monitoring the cutting force in machine operations in real time are crucial for realizing the full potential of cutting capabilities of computer numerically controlled (CNC) tools. The main objective of this paper is to present a brief review of the existing achievements in the field of multi-component cutting force sensing systems in modern manufacturing.

  10. Evaluation of diffusion coefficients in multicomponent mixtures by means of the fluctuation theory

    DEFF Research Database (Denmark)

    Shapiro, Alexander

    2003-01-01

    We derive general expressions for diffusion coefficients in multicomponent non-ideal gas or liquid mixtures. The derivation is based on the general statistical theory of fluctuations around an equilibrium state. The matrix of diffusion coefficients is expressed in terms of the equilibrium thermod...... characteristics. We demonstrate on several examples that the developed theory is in agreement with the established experimental facts and dependencies for the diffusion coefficients. (C) 2002 Elsevier Science B.V. All rights reserved.......We derive general expressions for diffusion coefficients in multicomponent non-ideal gas or liquid mixtures. The derivation is based on the general statistical theory of fluctuations around an equilibrium state. The matrix of diffusion coefficients is expressed in terms of the equilibrium...

  11. Vapor Transport of a Volatile Solvent for a Multicomponent Aerosol Droplet

    CERN Document Server

    Feng, James Q

    2015-01-01

    This work presents analytical formulas derived for evaluating vapor transport of a volatile solvent for an isolated multicomponent droplet in a quiescent environment, based on quasi-steady-state approximation. Among multiple solvent components, only one component is considered to be much more volatile than the rest such that other components are assumed to be nonvolatile remaining unchanged in the droplet during the process of (single-component) volatile solvent evaporation or condensation. For evaporating droplet, the droplet size often initially decreases following the familiar "d^2 law" at an accelerated rate. But toward the end, the rate of droplet size change diminishes due to the presence of nonvolatile cosolvent. Such an acceleration-deceleration reversal behavior is unique for evaporating multicomponent droplet, while the droplet of pure solvent has an accelerated rate of size change all the way through the end. This reversal behavior is also reflected in the droplet surface temperature evolution as "...

  12. Pharmaceutical cocrystals, salts and multicomponent systems; intermolecular interactions and property based design.

    Science.gov (United States)

    Berry, David J; Steed, Jonathan W

    2017-03-23

    As small molecule drugs become harder to develop and less cost effective for patient use, efficient strategies for their property improvement become increasingly important to global health initiatives. Improvements in the physical properties of Active Pharmaceutical Ingredients (APIs), without changes in the covalent chemistry, have long been possible through the application of binary component solids. This was first achieved through the use of pharmaceutical salts, within the last 10-15years with cocrystals and more recently coamorphous systems have also been consciously applied to this problem. In order to rationally discover the best multicomponent phase for drug development, intermolecular interactions need to be considered at all stages of the process. This review highlights the current thinking in this area and the state of the art in: pharmaceutical multicomponent phase design, the intermolecular interactions in these phases, the implications of these interactions on the material properties and the pharmacokinetics in a patient.

  13. Detailed finite element method modeling of evaporating multi-component droplets

    Energy Technology Data Exchange (ETDEWEB)

    Diddens, Christian, E-mail: C.Diddens@tue.nl

    2017-07-01

    The evaporation of sessile multi-component droplets is modeled with an axisymmetic finite element method. The model comprises the coupled processes of mixture evaporation, multi-component flow with composition-dependent fluid properties and thermal effects. Based on representative examples of water–glycerol and water–ethanol droplets, regular and chaotic examples of solutal Marangoni flows are discussed. Furthermore, the relevance of the substrate thickness for the evaporative cooling of volatile binary mixture droplets is pointed out. It is shown how the evaporation of the more volatile component can drastically decrease the interface temperature, so that ambient vapor of the less volatile component condenses on the droplet. Finally, results of this model are compared with corresponding results of a lubrication theory model, showing that the application of lubrication theory can cause considerable errors even for moderate contact angles of 40°. - Graphical abstract:.

  14. Solving multicomponent chiral separation challenges using a new SFC tandem column screening tool.

    Science.gov (United States)

    Welch, Christopher J; Biba, Mirlinda; Gouker, Joseph R; Kath, Gary; Augustine, Paul; Hosek, Paul

    2007-03-01

    A tool for improved tandem column chiral supercritical fluid chromatography (SFC) method development screening was prepared by modification of a commercial analytical SFC instrument with two different software-controllable, six position high-pressure column selection valves, each controlling a bank of five different columns and a pass through line. The resulting instrument, which has the ability to screen 10 different individual columns and 25 different tandem column arrangements, is a useful tool for facilitating the screening of tandem column SFC arrangements for separation of complex mixtures of stereoisomers or other multicomponent mixtures. Strategies for optimal use of the instrument are discussed, and several examples of the use of the instrument in developing tandem SFC methods for resolution of multicomponent mixtures are presented.

  15. Basic separative power of multi-component isotopes separation in a gas centrifuge

    Energy Technology Data Exchange (ETDEWEB)

    Jiang, Hongmin; Lei, Zengguang; Zhuge, Fu [Institute of Physical and Chemical Engineering, Tianjin (China)

    2008-07-01

    On condition that the overall separation factor per unit exists in centrifuge for multi-component isotopes separation, the relations between separative power of each component and molecular weight have been investigated in the paper while the value function and the separative power of binary-component separation are adopted. The separative power of each component is proportional to the square of the molecular weight difference between its molecular weight and the average molecular weight of other remnant components. In addition, these relations are independent on the number of the components and feed concentrations. The basic separative power and related expressions, suggested in the paper, can be used for estimating the separative power of each component and analyzing the separation characteristics. The most valuable application of the basic separative power is to evaluate the separative capacity of centrifuge for multi-component isotopes. (author)

  16. Methods and Research for Multi-Component Cutting Force Sensing Devices and Approaches in Machining

    Directory of Open Access Journals (Sweden)

    Qiaokang Liang

    2016-11-01

    Full Text Available Multi-component cutting force sensing systems in manufacturing processes applied to cutting tools are gradually becoming the most significant monitoring indicator. Their signals have been extensively applied to evaluate the machinability of workpiece materials, predict cutter breakage, estimate cutting tool wear, control machine tool chatter, determine stable machining parameters, and improve surface finish. Robust and effective sensing systems with capability of monitoring the cutting force in machine operations in real time are crucial for realizing the full potential of cutting capabilities of computer numerically controlled (CNC tools. The main objective of this paper is to present a brief review of the existing achievements in the field of multi-component cutting force sensing systems in modern manufacturing.

  17. Interplay of curvature-induced micro- and nanodomain structures in multicomponent lipid bilayers

    CERN Document Server

    Brodbek, Leonie

    2015-01-01

    We discuss different mechanisms for curvature-induced domain formation in multicomponent lipid membranes and present a theoretical model that allows us to study the interplay between the domains. The model represents the membrane by two coupled monolayers, which each carry an additional order parameter field describing the local lipid composition. The spontaneous curvature of each monolayer is coupled to the local composition, moreover, the lipid compositions on opposing monolayers are coupled to each other. Using this model, we calculate the phase behavior of the bilayer in mean-field approximation. The resulting phase diagrams are surprisingly complex and reveal a variety of phases and phase transitions, including a decorated microdomain phase where nanodomains are aligned along the microdomain boundaries. Our results suggest that external membrane tension can be used to control the lateral organization of nanodomains (which might be associated with lipid "rafts") in a multicomponent lipid bilayer.

  18. Multi-component LFM signal detection and parameter estimation based on Radon-HHT

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    A new method is proposed to analyze multi-component linear frequency modulated (LFM) signals, which eliminates cross terms in conventional Wigner-Ville distribution (WVD). The approach is based on Radon transform and Hilbert-Huang transform (HHT), which is a recently developed method adaptive to non-linear and non-stationary signals. The complicated signal is decomposed into several intrinsic mode functions (IMF) by the empirical mode decomposition (EMD), which makes the consequent instantaneous frequency meaningful. After the instantaneous frequency and Hilbert spectrum are computed, multi-component LFM signals detection and parameter estimation are obtained using Radon transform on the Hilbert spectrum plane. The simulation results show its feasibility and effectiveness.

  19. Simulating multi-component liquid phase adsorption systems: ethanol and residual sugar

    Energy Technology Data Exchange (ETDEWEB)

    Jones, R.; Tezel, F.H.; Thibault, J. [Department of Chemical and Biological Engineering, University of Ottawa (Canada)], email: Jules.Thibault@uottawa.ca

    2011-07-01

    A series of multi-component adsorption studies was performed to determine the relative advantages of producing ethanol which is to be blended with gasoline. These studies developed a model to describe the competition for adsorption sites between ethanol and sugar molecules on the surface of the adsorbent. Three competitive adsorption models established by batch systems were examined to evaluate the suitability of the experiment data across different ethanol and sugar concentrations and determine their isotherm parameters. Multi-component packed bed adsorption experiments were then performed. The results show that ethanol capacity was decreased only slightly from that obtained in single component adsorption studies. There is significant evidence to indicate that sugar displacement from adsorption sites occurs because adsorption of ethanol is preferred. So the capacity of sugars will be greatly reduced if there are appreciable ethanol concentrations.

  20. Research on multi-component gas optical detection system based on conjugated interferometer

    Science.gov (United States)

    Gui, Xin; Tong, Yuheng; Wang, Honghai; Yu, Haihu; Li, Zhengying

    2017-09-01

    An optical multi-component gas detection system based on the conjugated interferometer (CI) is proposed and experimentally demonstrated. It can realize the concentration detection of mixture gas in the environment. The CI can transform the absorption spectrum of the target gases to a conjugated emission spectrum, when combining the CI with the broadband light source, the spectrum of output light matches well with the absorption spectrum of target gases. The CI design for different target gases can be achieved by replacing the kind of target absorbing gas in the CI filter. Traditional fiber gas sensor system requires multiple light sources for detection when there are several kinds of gases, and this problem has been solved by using the CI filter combined with the broadband light source. The experimental results show that the system can detect the concentration of multi-component gases, which are mixed with C2H2 and NH3. Experimental results also show a good concentration sensing linearity.

  1. On the reliability of direct Rayleigh-wave estimation from multicomponent cross-correlations

    Science.gov (United States)

    Xu, Zongbo; Mikesell, T. Dylan

    2017-09-01

    Seismic interferometry is routinely used to image and characterize underground geology. The vertical component cross-correlations (CZZ) are often analysed in this process; although one can also use radial component and multicomponent cross-correlations (CRR and CZR, respectively), which have been shown to provide a more accurate Rayleigh-wave Green's function than CZZ when sources are unevenly distributed. In this letter, we identify the relationship between the multicomponent cross-correlations (CZR and CRR) and the Rayleigh-wave Green's functions to show why CZR and CRR are less sensitive than CZZ to non-stationary phase source energy. We demonstrate the robustness of CRR with a synthetic seismic noise data example. These results provide a compelling reason as to why CRR should be used to estimate the dispersive characteristics of the direct Rayleigh wave with seismic interferometry when the signal-to-noise ratio is high.

  2. Evaluation of Stored Energy from Microstructure of Multi-component Nanostructured Cu

    Institute of Scientific and Technical Information of China (English)

    Feng Yan; Hongwang Zhang

    2012-01-01

    A polycrystalline Cu of 99.995% purity has been deformed by dynamic plastic deformation at liquid nitrogen temperature to a strain of 2.1 (LNT-DPD Cu). Three distinct regions that are dominated by dislocation slip, shear banding and nanotwinning, form a multi-component nanostructure. The microstructure of each region has been quantified by transmission electron microscopy assisted by Kikuchi line analysis. Based on the structural parameters the stored energy of each region was evaluated, and the total energy can be assumed to be a linear additivity of that in each region weighted by the respective volume fraction. A microstructure based evaluation of the stored energy of multi-component nanostructure has been proposed.

  3. CloudGenius: Automated Decision Support for Migrating Multi-Component Enterprise Applications to Clouds

    CERN Document Server

    Menzel, Michael

    2011-01-01

    One of the key problems in migrating multi-component enterprise applications to Clouds is selecting the best mix of VM images and Cloud infrastructure services. A migration process has to ensure that Quality of Service (QoS) requirements are met, while satisfying conflicting selection criteria, e.g. throughput and cost. When selecting Cloud services, application engineers must consider heterogeneous sets of criteria and complex dependencies across multiple layers impossible to resolve manually. To overcome this challenge, we present the generic recommender framework CloudGenius and an implementation that leverage well known multi-criteria decision making technique Analytic Hierarchy Process to automate the selection process based on a model, factors, and QoS requirements related to enterprise applications. In particular, we introduce a structured migration process for multi-component enterprise applications, clearly identify the most important criteria relevant to the selection problem and present a multi-cri...

  4. Phase-field theory of multicomponent incompressible Cahn-Hilliard liquids

    Science.gov (United States)

    Tóth, Gyula I.; Zarifi, Mojdeh; Kvamme, Bjørn

    2016-01-01

    In this paper, a generalization of the Cahn-Hilliard theory of binary liquids is presented for multicomponent incompressible liquid mixtures. First, a thermodynamically consistent convection-diffusion-type dynamics is derived on the basis of the Lagrange multiplier formalism. Next, a generalization of the binary Cahn-Hilliard free-energy functional is presented for an arbitrary number of components, offering the utilization of independent pairwise equilibrium interfacial properties. We show that the equilibrium two-component interfaces minimize the functional, and we demonstrate that the energy penalization for multicomponent states increases strictly monotonously as a function of the number of components being present. We validate the model via equilibrium contact angle calculations in ternary and quaternary (four-component) systems. Simulations addressing liquid-flow-assisted spinodal decomposition in these systems are also presented.

  5. Detection and parameter estimation of multicomponent LFM signal based on the fractional Fourier transform

    Institute of Scientific and Technical Information of China (English)

    QI Lin; TAO Ran; ZHOU Siyong; WANG Yue

    2004-01-01

    This paper presents a new method for the detection and parameter estimation of multicomponent LFM signals based on the fractional Fourier transform. For the optimization in the fractional Fourier domain, an algorithm based on Quasi-Newton method is proposed which consists of two steps of searching, leading to a reduction in computation without loss of accuracy. And for multicomponent signals, we further propose a signal separation technique in the fractional Fourier domain which can effectively suppress the interferences on the detection of the weak components brought by the stronger components. The statistical analysis of the estimate errors is also performed which perfects the method theoretically, and finally, simulation results are provided to show the validity of our method.

  6. Thermodynamics of the multicomponent vapor-liquid equilibrium under capillary pressure difference

    DEFF Research Database (Denmark)

    Shapiro, Alexander; Stenby, Erling Halfdan

    2001-01-01

    We discuss the two-phase multicomponent equilibrium, provided that the phase pressures are different due to the action of capillary forces. We prove the two general properties of such an equilibrium, which have previously been known for a single-component case, however, to the best of our knowledge......, not for the multicomponent mixtures. The importance is emphasized on the space of the intensive variables P, T and mu (i), where the laws of capillary equilibrium have a simple geometrical interpretation. We formulate thermodynamic problems specific to such an equilibrium, and outline changes to be introduced to common...... algorithms of flash calculations in order to solve these problems. Sample calculations show large variation of the capillary properties of the mixture in the very neighborhood of the phase envelope and the restrictive role of the spinodal surface as a boundary for possible equilibrium states with different...

  7. Asymptotic Solutions of the Kinetic Boltzmann Equation, Multicomponent Non-equilibrium Gas Dynamics and Turbulence

    CERN Document Server

    Serov, S A

    2013-01-01

    In the article correct method for the kinetic Boltzmann equation asymptotic solution is formulated, the Hilbert's and Enskog's methods are discussed. The equations system of multicomponent non-equilibrium gas dynamics is derived, that corresponds to the first order in the approximate (asymptotic) method for solution of the system of kinetic Boltzmann equations. It is shown, that the velocity distribution functions of particles, obtained by the proposed method and by Enskog's method, within Enskog's approach, are equivalent up to the infinitesimal first order terms of the asymptotic expansion, but, generally speaking, differ in the next order. Interpretation of turbulent gas flow is proposed, as stratified on components gas flow, which is described by the derived equations system of multicomponent non-equilibrium gas dynamics.

  8. Chip-integrated all-optical diode based on nonlinear plasmonic nanocavities covered with multicomponent nanocomposite

    Science.gov (United States)

    Chai, Zhen; Hu, Xiaoyong; Yang, Hong; Gong, Qihuang

    2017-01-01

    Ultracompact chip-integrated all-optical diode is realized experimentally in a plasmonic microstructure, consisting of a plasmonic waveguide side-coupled two asymmetric plasmonic composite nanocavities covered with a multicomponent nanocomposite layer, formed directly in a plasmonic circuit. Extremely large optical nonlinearity enhancement is obtained for the multicomponent nanocomposite cover layer, originating from resonant excitation, slow-light effect, and field enhancement effect. Nonreciprocal transmission was achieved based on the difference in the shift magnitude of the transparency window centers of two asymmetric plasmonic nanocavities induced by the signal light, itself, for the forward and backward propagation cases. An ultralow threshold incident light power of 145 μW (corresponding to a threshold intensity of 570 kW/cm2) is realized, which is reduced by seven orders of magnitude compared with previous reports. An ultrasmall feature size of 2 μm and a transmission contrast ratio of 15 dB are obtained simultaneously.

  9. Experimental study on fire extinguishing with a newly prepared multi-component compressed air foam

    Institute of Scientific and Technical Information of China (English)

    WANG XiShi; LIAO YaoJian; LIN Lin

    2009-01-01

    A multi-component compressed air foam system (MCAFS) was developed with newly prepared multi-component foaming agents. Extinguishing of wood crib and oil pool fires was performed under different conditions, such as foam concentration, mixing chamber forepart structure and working pressure. It was found that the foam concentration had sufficient effects on fire extinguishing efficiency, and an optimized concentration value exists. For instance, for diesel oil pool fires, this value is about 2.2% while it is about 4.0% for wood crib fires. The results also show that the system with a coaxial mixing chamber has greater efficiency than a T-shape. The effects of working pressure on fire extin-guishing are evident in experiments, i.e., the higher the working pressure is, the more readily the fire is extinguished.

  10. Impact of multicomponent ionic transport on pH fronts propagation in saturated porous media

    DEFF Research Database (Denmark)

    Muniruzzaman, Muhammad; Rolle, Massimo

    2016-01-01

    Multicomponent ionic interactions have been increasingly recognized as important factors for the displacement of charged species in porous media under both diffusion- [1,2] and advection-dominated flow regimes [3,4]. In this study we investigate the propagation of pH fronts during multicomponent...... ionic transport in saturated porous media under flow-through conditions. By performing laboratory bench-scale experiments combined with numerical modeling we show the important influence of Coulombic effects on proton transport in the presence of ionic admixtures. The experiments were performed...... in a quasi two-dimensional flow-through setup under steady-state flow and transport conditions. Dilute solutions of hydrochloric acid with MgCl2 (1:2 strong electrolyte) were used as tracer solutions to experimentally test the effect of electrochemical cross-coupling on the migration of diffusive...

  11. Study on Seismic Control of Power Transmission Tower-Line Coupled System under Multicomponent Excitations

    Directory of Open Access Journals (Sweden)

    Li Tian

    2013-01-01

    Full Text Available The seismic control of power transmission tower-line coupled system subjected to multicomponent excitations is studied in this paper. The schematic of tuned mass damper is introduced, and equations of motion of a system with tuned mass damper under multi-component excitations are proposed. Three-dimensional finite tower-line system models are created based on practical engineering in studying the response of this system without and with control. The time domain analysis takes into account geometric nonlinearity due to finite deformation. The optimal design of the transmission tower-line system with tuned mass damper is obtained according to different mass ratio. The effects of wave travel, coherency loss, and different site conditions on the system without and with control are investigated, respectively.

  12. Photovoltaic self-assembly.

    Energy Technology Data Exchange (ETDEWEB)

    Lavin, Judith; Kemp, Richard Alan; Stewart, Constantine A.

    2010-10-01

    This late-start LDRD was focused on the application of chemical principles of self-assembly on the ordering and placement of photovoltaic cells in a module. The drive for this chemical-based self-assembly stems from the escalating prices in the 'pick-and-place' technology currently used in the MEMS industries as the size of chips decreases. The chemical self-assembly principles are well-known on a molecular scale in other material science systems but to date had not been applied to the assembly of cells in a photovoltaic array or module. We explored several types of chemical-based self-assembly techniques, including gold-thiol interactions, liquid polymer binding, and hydrophobic-hydrophilic interactions designed to array both Si and GaAs PV chips onto a substrate. Additional research was focused on the modification of PV cells in an effort to gain control over the facial directionality of the cells in a solvent-based environment. Despite being a small footprint research project worked on for only a short time, the technical results and scientific accomplishments were significant and could prove to be enabling technology in the disruptive advancement of the microelectronic photovoltaics industry.

  13. ALGORITHM FOR THE DETECTION AND PARAMETER ESTIMATION OF MULTICOMPONENT LFM SIGNALS

    Institute of Scientific and Technical Information of China (English)

    Yuan Weiming; Wang Min; Wu Shunjun

    2005-01-01

    A novel algorithm based on Radon-Ambiguity Transform (RAT) and Adaptive Signal Decomposition (ASD) is presented for the detection and parameter estimation of multicomponent Linear Frequency Modulated (LFM) signals. The key problem lies in the chirplet estimation.Genetic algorithm is employed to search for the optimization parameter of chirplet. High estimation accuracy can be obtained even at low Signal-to-Noise Ratio(SNR). Finally simulation results are provided to demonstrate the performance of the proposed algorithm.

  14. Destabilisation of magnesium hydride by germanium as a new potential multicomponent hydrogen storage system.

    Science.gov (United States)

    Walker, Gavin S; Abbas, Marwa; Grant, David M; Udeh, Chima

    2011-07-28

    MgH(2) has too high an operating temperature for many hydrogen storage applications. However, MgH(2) ball-milled with Ge leads to a thermodynamic destabilisation of >50 kJ mol(-1)(H(2)). This has dramatically reduced the temperature of dehydrogenation to 130 °C, opening up the potential for Mg-based multicomponent systems as hydrogen stores for a range of applications.

  15. On heat conduction in multicomponent, non-Maxwellian spherically symmetric solar wind plasmas

    Science.gov (United States)

    Cuperman, S.; Dryer, M.

    1985-01-01

    A generalized expression for the steady-state heat flux in multicomponent, moderately non-Maxwellian spherically symmetric plasmas is presented and discussed. The work was motivated by the inability of the simple, Fourier-type formula for the thermal conductivity to explain the observed correlations in the solar wind. The results hold for situations not far from local thermodynamic equilibrium. The generalized expression includes not only correlations that have been observed but also correlations not sought for previously.

  16. Mechanics of transport phenomena in multi-component sessile drops with solidification

    Science.gov (United States)

    Su, Yeong-Jen; Yang, Wen-Jei; Liu, Jiaching

    1990-01-01

    The mechanics of transport phenomena in multicomponent sessile drops with internal solidification is determined on the basis of an experimental study. A shadowgraph-schlieren system and a microscope-video system are used for the study. It is suggested that present data can be used to enhance the solid or crystal quality in a reduced-gravity environment where both thermo- and diffuso-capillary effects of solidification and crystal growth are dominant.

  17. Stratigraphic inversion of pre-stack multicomponent data; Inversion stratigraphique multicomposante avant sommation

    Energy Technology Data Exchange (ETDEWEB)

    Agullo, Y.

    2005-09-15

    This thesis present the extension of mono-component seismic pre-stack data stratigraphical inversion method to multicomponent data, with the objective of improving the determination of reservoir elastic parameters. In addiction to the PP pressure waves, the PS converted waves proved their interest for imaging under gas clouds; and their potential is highly significant for the characterization of lithologies, fluids, fractures... Nevertheless the simultaneous use ol PP and PS data remains problematic because of their different the time scales. To jointly use the information contained in PP and PS data, we propose a method in three steps first, mono-component stratigraphic inversions of PP then PS data; second, estimation of the PP to PS time conversion law; third, multicomponent stratigraphic inversion. For the second point, the estimation of the PP to PS conversion law is based on minimizing the difference between the S impedances obtained from PP and PS mono-component stratigraphic inversion. The pre-stack mono-component stratigraphic inversions was adapted to the case of multicomponent data by leaving each type of data in its own time scale in order to avoid the distortion of the seismic wavelet. The results obtained on a realistic synthetic PP-PS case show on one hand that determining PP to PS conversion law (from the mono-component inversion results) is feasible, and on the other hand that the joint inversion of PP and PS data with this conversion law improves the results compared to the mono-component inversion ones. Although this is presented within the framework of the PP and PS multi-component data, the developed methodology adapts directly to PP and SS data for example. (author)

  18. The multi-component model of working memory: explorations in experimental cognitive psychology.

    Science.gov (United States)

    Repovs, G; Baddeley, A

    2006-04-28

    There are a number of ways one can hope to describe and explain cognitive abilities, each of them contributing a unique and valuable perspective. Cognitive psychology tries to develop and test functional accounts of cognitive systems that explain the capacities and properties of cognitive abilities as revealed by empirical data gathered by a range of behavioral experimental paradigms. Much of the research in the cognitive psychology of working memory has been strongly influenced by the multi-component model of working memory [Baddeley AD, Hitch GJ (1974) Working memory. In: Recent advances in learning and motivation, Vol. 8 (Bower GA, ed), pp 47-90. New York: Academic Press; Baddeley AD (1986) Working memory. Oxford, UK: Clarendon Press; Baddeley A. Working memory: Thought and action. Oxford: Oxford University Press, in press]. By expanding the notion of a passive short-term memory to an active system that provides the basis for complex cognitive abilities, the model has opened up numerous questions and new lines of research. In this paper we present the current revision of the multi-component model that encompasses a central executive, two unimodal storage systems: a phonological loop and a visuospatial sketchpad, and a further component, a multimodal store capable of integrating information into unitary episodic representations, termed episodic buffer. We review recent empirical data within experimental cognitive psychology that has shaped the development of the multicomponent model and the understanding of the capacities and properties of working memory. Research based largely on dual-task experimental designs and on neuropsychological evidence has yielded valuable information about the fractionation of working memory into independent stores and processes, the nature of representations in individual stores, the mechanisms of their maintenance and manipulation, the way the components of working memory relate to each other, and the role they play in other

  19. On the averaging of ratios of specific heats in a multicomponent planetary atmosphere

    Science.gov (United States)

    Dubisch, R.

    1974-01-01

    The use of adiabatic relations in the calculation of planetary atmospheres requires knowledge of the ratio of specific heats of a mixture of gases under various pressure and temperature conditions. It is shown that errors introduced by simple averaging of the ratio of specific heats in a multicomponent atmosphere can be roughly 0.4%. Therefore, the gamma-averaging error can become important when integrating through the atmosphere to a large depth.

  20. Modern Multicomponent Multi-Targetel Drugs and Composite Drugs in Traditional Chinese Medicine

    Institute of Scientific and Technical Information of China (English)

    Chu-Shiang; Chen; Kai-Tzu; Lu; Song-Shiang; Lin; Katherine; Chen

    2007-01-01

    1 Results Current single-targeted drugs still cannot effectively treat many complex diseases such as cancer, diabetes, heart disease, arthritis, asthma, and depression. Increasing awareness that treatments must address all relevant causes of such diseases has promoted the development of multicomponent drugs. Thus, medical practitioners have turned to a multi-target approach, one similar to those used to develop composite materials. With this approach, tailoring treatment can enhance efficacy and suppres...