WorldWideScience

Sample records for model simulations revealed

  1. REVEAL: An Extensible Reduced Order Model Builder for Simulation and Modeling

    Energy Technology Data Exchange (ETDEWEB)

    Agarwal, Khushbu; Sharma, Poorva; Ma, Jinliang; Lo, Chaomei; Gorton, Ian; Liu, Yan

    2013-04-30

    Many science domains need to build computationally efficient and accurate representations of high fidelity, computationally expensive simulations. These computationally efficient versions are known as reduced-order models. This paper presents the design and implementation of a novel reduced-order model (ROM) builder, the REVEAL toolset. This toolset generates ROMs based on science- and engineering-domain specific simulations executed on high performance computing (HPC) platforms. The toolset encompasses a range of sampling and regression methods that can be used to generate a ROM, automatically quantifies the ROM accuracy, and provides support for an iterative approach to improve ROM accuracy. REVEAL is designed to be extensible in order to utilize the core functionality with any simulator that has published input and output formats. It also defines programmatic interfaces to include new sampling and regression techniques so that users can ‘mix and match’ mathematical techniques to best suit the characteristics of their model. In this paper, we describe the architecture of REVEAL and demonstrate its usage with a computational fluid dynamics model used in carbon capture.

  2. Complete protein-protein association kinetics in atomic detail revealed by molecular dynamics simulations and Markov modelling

    Science.gov (United States)

    Plattner, Nuria; Doerr, Stefan; de Fabritiis, Gianni; Noé, Frank

    2017-10-01

    Protein-protein association is fundamental to many life processes. However, a microscopic model describing the structures and kinetics during association and dissociation is lacking on account of the long lifetimes of associated states, which have prevented efficient sampling by direct molecular dynamics (MD) simulations. Here we demonstrate protein-protein association and dissociation in atomistic resolution for the ribonuclease barnase and its inhibitor barstar by combining adaptive high-throughput MD simulations and hidden Markov modelling. The model reveals experimentally consistent intermediate structures, energetics and kinetics on timescales from microseconds to hours. A variety of flexibly attached intermediates and misbound states funnel down to a transition state and a native basin consisting of the loosely bound near-native state and the tightly bound crystallographic state. These results offer a deeper level of insight into macromolecular recognition and our approach opens the door for understanding and manipulating a wide range of macromolecular association processes.

  3. Computer simulations reveal complex distribution of haemodynamic forces in a mouse retina model of angiogenesis

    CERN Document Server

    Bernabeu, Miguel O; Jones, Martin; Nielsen, Jens H; Krüger, Timm; Nash, Rupert W; Groen, Derek; Hetherington, James; Gerhardt, Holger; Coveney, Peter V

    2013-01-01

    There is currently limited understanding of the role played by haemodynamic forces on the processes governing vascular development. One of many obstacles to be overcome is being able to measure those forces, at the required resolution level, on vessels only a few micrometres thick. In the current paper, we present an in silico method for the computation of the haemodynamic forces experienced by murine retinal vasculature (a widely used vascular development animal model) beyond what is measurable experimentally. Our results show that it is possible to reconstruct high-resolution three-dimensional geometrical models directly from samples of retinal vasculature and that the lattice-Boltzmann algorithm can be used to obtain accurate estimates of the haemodynamics in these domains. Our findings show that the flow patterns recovered are complex, that branches of predominant flow exist from early development stages, and that the pruning process tends to make the wall shear stress experienced by the capillaries incre...

  4. A bacterial spore model of pulsed electric fields on spore morphology change revealed by simulation and SEM.

    Science.gov (United States)

    Qiu, Xing; Lee, Yin Tung; Yung, Pun To

    2014-01-01

    A two-layered spore model was proposed to analyze morphological change of bacterial spores subjected under pulsed electric fields. The outer layer, i.e. spore coat, was defined by Mooney-Rivlin hyper-elastic material model. The inner layer, i.e. peptidoglycan and spore core, was modeled by applying additional adhesion forces. The effect of pulsed electric fields on surface displacement was simulated in COMSOL Multiphysics and verified by SEM. The electro-mechanical theory, considering spore coat as a capacitor, was used to explain concavity; and the thin viscoelastic film theory, considering membrane bilayer as fluctuating surfaces, was used to explain leakage forming. Mutual interaction of external electric fields, charged spores, adhesion forces and ions movement were all predicted to contribute to concavity and leakage.

  5. In silico simulation modeling reveals the importance of the Casparian strip for efficient silicon uptake in rice roots.

    Science.gov (United States)

    Sakurai, Gen; Satake, Akiko; Yamaji, Naoki; Mitani-Ueno, Namiki; Yokozawa, Masayuki; Feugier, François Gabriel; Ma, Jian Feng

    2015-04-01

    Silicon (Si) uptake by the roots is mediated by two different transporters, Lsi1 (passive) and Lsi2 (active), in rice (Oryza sativa). Both transporters are polarly localized in the plasma membranes of exodermal (outer) and endodermal (inner) cells with Casparian strips. However, it is unknown how rice is able to take up large amounts of Si compared with other plants, and why rice Si transporters have a characteristic cellular localization pattern. To answer these questions, we simulated Si uptake by rice roots by developing a mathematical model based on a simple diffusion equation that also accounts for active transport by Lsi2. In this model, we calibrated the model parameters using in vivo experimental data on the Si concentrations in the xylem sap and a Monte Carlo method. In our simulation experiments, we compared the Si uptake between roots with various transporter and Casparian strip locations and estimated the Si transport efficiency of roots with different localization patterns and quantities of the Lsi transporters. We found that the Si uptake by roots that lacked Casparian strips was lower than that of normal roots. This suggests that the double-layer structure of the Casparian strips is an important factor in the high Si uptake by rice. We also found that among various possible localization patterns, the most efficient one was that of the wild-type rice; this may explain the high Si uptake capacity of rice. © The Author 2015. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

  6. A Model for the Formation of the Chesapeake Bay Impact Crater as Revealed by Drilling and Numerical Simulation

    Science.gov (United States)

    Collins, G. S.; Kenkmann, T.; Wünnemann, K.; Wittmann, A.; Reimold, W. U.; Melosh, H. J.

    The combination of numerical simulation results and petrographic analysis of drill core from the recent ICDP-USGS drilling project provides new insight into the formation of the Chesapeake Bay impact crater.

  7. Simulation modeling and arena

    CERN Document Server

    Rossetti, Manuel D

    2015-01-01

    Emphasizes a hands-on approach to learning statistical analysis and model building through the use of comprehensive examples, problems sets, and software applications With a unique blend of theory and applications, Simulation Modeling and Arena®, Second Edition integrates coverage of statistical analysis and model building to emphasize the importance of both topics in simulation. Featuring introductory coverage on how simulation works and why it matters, the Second Edition expands coverage on static simulation and the applications of spreadsheets to perform simulation. The new edition als

  8. Computer Modeling and Simulation

    Energy Technology Data Exchange (ETDEWEB)

    Pronskikh, V. S. [Fermilab

    2014-05-09

    Verification and validation of computer codes and models used in simulation are two aspects of the scientific practice of high importance and have recently been discussed by philosophers of science. While verification is predominantly associated with the correctness of the way a model is represented by a computer code or algorithm, validation more often refers to model’s relation to the real world and its intended use. It has been argued that because complex simulations are generally not transparent to a practitioner, the Duhem problem can arise for verification and validation due to their entanglement; such an entanglement makes it impossible to distinguish whether a coding error or model’s general inadequacy to its target should be blamed in the case of the model failure. I argue that in order to disentangle verification and validation, a clear distinction between computer modeling (construction of mathematical computer models of elementary processes) and simulation (construction of models of composite objects and processes by means of numerical experimenting with them) needs to be made. Holding on to that distinction, I propose to relate verification (based on theoretical strategies such as inferences) to modeling and validation, which shares the common epistemology with experimentation, to simulation. To explain reasons of their intermittent entanglement I propose a weberian ideal-typical model of modeling and simulation as roles in practice. I suggest an approach to alleviate the Duhem problem for verification and validation generally applicable in practice and based on differences in epistemic strategies and scopes

  9. Theory Modeling and Simulation

    Energy Technology Data Exchange (ETDEWEB)

    Shlachter, Jack [Los Alamos National Laboratory

    2012-08-23

    Los Alamos has a long history in theory, modeling and simulation. We focus on multidisciplinary teams that tackle complex problems. Theory, modeling and simulation are tools to solve problems just like an NMR spectrometer, a gas chromatograph or an electron microscope. Problems should be used to define the theoretical tools needed and not the other way around. Best results occur when theory and experiments are working together in a team.

  10. Simulation modeling of carcinogenesis.

    Science.gov (United States)

    Ellwein, L B; Cohen, S M

    1992-03-01

    A discrete-time simulation model of carcinogenesis is described mathematically using recursive relationships between time-varying model variables. The dynamics of cellular behavior is represented within a biological framework that encompasses two irreversible and heritable genetic changes. Empirical data and biological supposition dealing with both control and experimental animal groups are used together to establish values for model input variables. The estimation of these variables is integral to the simulation process as described in step-by-step detail. Hepatocarcinogenesis in male F344 rats provides the basis for seven modeling scenarios which illustrate the complexity of relationships among cell proliferation, genotoxicity, and tumor risk.

  11. Modelling and simulation

    Energy Technology Data Exchange (ETDEWEB)

    Casetti, E.; Vogt, W.G.; Mickle, M.H.

    1984-01-01

    This conference includes papers on the uses of supercomputers, multiprocessors, artificial intelligence and expert systems in various energy applications. Topics considered include knowledge-based expert systems for power engineering, a solar air conditioning laboratory computer system, multivariable control systems, the impact of power system disturbances on computer systems, simulating shared-memory parallel computers, real-time image processing with multiprocessors, and network modeling and simulation of greenhouse solar systems.

  12. Validation of simulation models

    DEFF Research Database (Denmark)

    Rehman, Muniza; Pedersen, Stig Andur

    2012-01-01

    In philosophy of science, the interest for computational models and simulations has increased heavily during the past decades. Different positions regarding the validity of models have emerged but the views have not succeeded in capturing the diversity of validation methods. The wide variety...... of models has been somewhat narrow-minded reducing the notion of validation to establishment of truth. This article puts forward the diversity in applications of simulation models that demands a corresponding diversity in the notion of validation....... of models with regards to their purpose, character, field of application and time dimension inherently calls for a similar diversity in validation approaches. A classification of models in terms of the mentioned elements is presented and used to shed light on possible types of validation leading...

  13. Wake modeling and simulation

    DEFF Research Database (Denmark)

    Larsen, Gunner Chr.; Madsen Aagaard, Helge; Larsen, Torben J.;

    , have the potential to include also mutual wake interaction phenomenons. The basic conjecture behind the dynamic wake meandering (DWM) model is that wake transportation in the atmospheric boundary layer is driven by the large scale lateral- and vertical turbulence components. Based on this conjecture...... and trailed vorticity, has been approached by a simple semi-empirical model essentially based on an eddy viscosity philosophy. Contrary to previous attempts to model wake loading, the DWM approach opens for a unifying description in the sense that turbine power- and load aspects can be treated simultaneously...... methodology has been implemented in the aeroelastic code HAWC2, and example simulations of wake situations, from the small Tjæreborg wind farm, have been performed showing satisfactory agreement between predictions and measurements...

  14. Delay modeling in logic simulation

    Energy Technology Data Exchange (ETDEWEB)

    Acken, J. M.; Goldstein, L. H.

    1980-01-01

    As digital integrated circuit size and complexity increases, the need for accurate and efficient computer simulation increases. Logic simulators such as SALOGS (SAndia LOGic Simulator), which utilize transition states in addition to the normal stable states, provide more accurate analysis than is possible with traditional logic simulators. Furthermore, the computational complexity of this analysis is far lower than that of circuit simulation such as SPICE. An eight-value logic simulation environment allows the use of accurate delay models that incorporate both element response and transition times. Thus, timing simulation with an accuracy approaching that of circuit simulation can be accomplished with an efficiency comparable to that of logic simulation. 4 figures.

  15. Modeling and Simulation of Matrix Converter

    DEFF Research Database (Denmark)

    Liu, Fu-rong; Klumpner, Christian; Blaabjerg, Frede

    2005-01-01

    This paper discusses the modeling and simulation of matrix converter. Two models of matrix converter are presented: one is based on indirect space vector modulation and the other is based on power balance equation. The basis of these two models is• given and the process on modeling is introduced...... in details. The results of simulations developed for different researches reveal that different mdel may be suitable for different purpose, thus the model should be chosen different carefully. Some details and tricks in modeling are also introduced which give a reference for further research....

  16. Preparations, models, and simulations.

    Science.gov (United States)

    Rheinberger, Hans-Jörg

    2015-01-01

    This paper proposes an outline for a typology of the different forms that scientific objects can take in the life sciences. The first section discusses preparations (or specimens)--a form of scientific object that accompanied the development of modern biology in different guises from the seventeenth century to the present: as anatomical-morphological specimens, as microscopic cuts, and as biochemical preparations. In the second section, the characteristics of models in biology are discussed. They became prominent from the end of the nineteenth century onwards. Some remarks on the role of simulations--characterising the life sciences of the turn from the twentieth to the twenty-first century--conclude the paper.

  17. Notes on modeling and simulation

    Energy Technology Data Exchange (ETDEWEB)

    Redondo, Antonio [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2017-03-10

    These notes present a high-level overview of how modeling and simulation are carried out by practitioners. The discussion is of a general nature; no specific techniques are examined but the activities associated with all modeling and simulation approaches are briefly addressed. There is also a discussion of validation and verification and, at the end, a section on why modeling and simulation are useful.

  18. Evaluating uncertainty in simulation models

    Energy Technology Data Exchange (ETDEWEB)

    McKay, M.D.; Beckman, R.J.; Morrison, J.D.; Upton, S.C.

    1998-12-01

    The authors discussed some directions for research and development of methods for assessing simulation variability, input uncertainty, and structural model uncertainty. Variance-based measures of importance for input and simulation variables arise naturally when using the quadratic loss function of the difference between the full model prediction y and the restricted prediction {tilde y}. The concluded that generic methods for assessing structural model uncertainty do not now exist. However, methods to analyze structural uncertainty for particular classes of models, like discrete event simulation models, may be attainable.

  19. Simulation Model of a Transient

    DEFF Research Database (Denmark)

    Jauch, Clemens; Sørensen, Poul; Bak-Jensen, Birgitte

    2005-01-01

    This paper describes the simulation model of a controller that enables an active-stall wind turbine to ride through transient faults. The simulated wind turbine is connected to a simple model of a power system. Certain fault scenarios are specified and the turbine shall be able to sustain operation...... in case of such faults. The design of the controller is described and its performance assessed by simulations. The control strategies are explained and the behaviour of the turbine discussed....

  20. Simulation Model of a Transient

    DEFF Research Database (Denmark)

    Jauch, Clemens; Sørensen, Poul; Bak-Jensen, Birgitte

    2005-01-01

    This paper describes the simulation model of a controller that enables an active-stall wind turbine to ride through transient faults. The simulated wind turbine is connected to a simple model of a power system. Certain fault scenarios are specified and the turbine shall be able to sustain operation...

  1. Simulation - modeling - experiment; Simulation - modelisation - experience

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2004-07-01

    After two workshops held in 2001 on the same topics, and in order to make a status of the advances in the domain of simulation and measurements, the main goals proposed for this workshop are: the presentation of the state-of-the-art of tools, methods and experiments in the domains of interest of the Gedepeon research group, the exchange of information about the possibilities of use of computer codes and facilities, about the understanding of physical and chemical phenomena, and about development and experiment needs. This document gathers 18 presentations (slides) among the 19 given at this workshop and dealing with: the deterministic and stochastic codes in reactor physics (Rimpault G.); MURE: an evolution code coupled with MCNP (Meplan O.); neutronic calculation of future reactors at EdF (Lecarpentier D.); advance status of the MCNP/TRIO-U neutronic/thermal-hydraulics coupling (Nuttin A.); the FLICA4/TRIPOLI4 thermal-hydraulics/neutronics coupling (Aniel S.); methods of disturbances and sensitivity analysis of nuclear data in reactor physics, application to VENUS-2 experimental reactor (Bidaud A.); modeling for the reliability improvement of an ADS accelerator (Biarotte J.L.); residual gas compensation of the space charge of intense beams (Ben Ismail A.); experimental determination and numerical modeling of phase equilibrium diagrams of interest in nuclear applications (Gachon J.C.); modeling of irradiation effects (Barbu A.); elastic limit and irradiation damage in Fe-Cr alloys: simulation and experiment (Pontikis V.); experimental measurements of spallation residues, comparison with Monte-Carlo simulation codes (Fallot M.); the spallation target-reactor coupling (Rimpault G.); tools and data (Grouiller J.P.); models in high energy transport codes: status and perspective (Leray S.); other ways of investigation for spallation (Audoin L.); neutrons and light particles production at intermediate energies (20-200 MeV) with iron, lead and uranium targets (Le Colley F

  2. IVOA Recommendation: Simulation Data Model

    CERN Document Server

    Lemson, Gerard; Cervino, Miguel; Gheller, Claudio; Gray, Norman; LePetit, Franck; Louys, Mireille; Ooghe, Benjamin; Wagner, Rick; Wozniak, Herve

    2014-01-01

    In this document and the accompanying documents we describe a data model (Simulation Data Model) describing numerical computer simulations of astrophysical systems. The primary goal of this standard is to support discovery of simulations by describing those aspects of them that scientists might wish to query on, i.e. it is a model for meta-data describing simulations. This document does not propose a protocol for using this model. IVOA protocols are being developed and are supposed to use the model, either in its original form or in a form derived from the model proposed here, but more suited to the particular protocol. The SimDM has been developed in the IVOA Theory Interest Group with assistance of representatives of relevant working groups, in particular DM and Semantics.

  3. 基于Voxel改进模型的数控三维实体建模及显示%3D Solid Modeling and Reveal in CNC Simulation Based on the Improved Voxel Model

    Institute of Scientific and Technical Information of China (English)

    王彦; 高建瓴; 李杨; 梁佳

    2011-01-01

    In the process of dealing with the cutting calculation of Multi-axis CNC Simulation, the traditional Voxel Model not only will cost large computation time when judging whether the cutting happens or not, but also the data points may occupy greater storage space. , so it is not able to meet the requirement of real-time emula tion; In the construction method of Compressed Voxel Model, it can satisfy the need of Multi-axis CNC Simula tion , and storage space is relatively small, also the model reconstruction speed is faster, but the Boolean compu tation in the cutting judgment is very complex, so it affects the real-time of CNC Simulation indirectly. Aimed at the flaws of above means, the paper proposes a improved solid modeling way based on the Voxel model, it can meet the demand of real-time in cutting computation and Graphic display speed.%传统的Voxel模型在处理多轴数控切削仿真时,不仅在判断是否发生切削上会耗费大量的运算时间,而且数据点的存储也占据了较大的内存空间,不能满足实时快速仿真的要求;在压缩体素模型构造方法中,虽然能够满足多轴数控切削仿真的要求,且存储空间较小,模型重构速度较快,但是在切削判断上的布尔运算量较大,间接影响了数控仿真的实时性.针对以上方法的不足,提出一种基于Voxel改进模型的三维实体建模方法,在显示速度和切削判断上都能够较好地满足数控实体仿真的实时性.

  4. Modeling and Simulation with INS.

    Science.gov (United States)

    Roberts, Stephen D.; And Others

    INS, the Integrated Network Simulation language, puts simulation modeling into a network framework and automatically performs such programming activities as placing the problem into a next event structure, coding events, collecting statistics, monitoring status, and formatting reports. To do this, INS provides a set of symbols (nodes and branches)…

  5. Simulation modeling of estuarine ecosystems

    Science.gov (United States)

    Johnson, R. W.

    1980-01-01

    A simulation model has been developed of Galveston Bay, Texas ecosystem. Secondary productivity measured by harvestable species (such as shrimp and fish) is evaluated in terms of man-related and controllable factors, such as quantity and quality of inlet fresh-water and pollutants. This simulation model used information from an existing physical parameters model as well as pertinent biological measurements obtained by conventional sampling techniques. Predicted results from the model compared favorably with those from comparable investigations. In addition, this paper will discuss remotely sensed and conventional measurements in the framework of prospective models that may be used to study estuarine processes and ecosystem productivity.

  6. Modeling and Simulating Environmental Effects

    OpenAIRE

    Guest, Peter S.; Murphree, Tom; Frederickson, Paul A.; Guest, Arlene A.

    2012-01-01

    MOVES Research & Education Systems Seminar: Presentation; Session 4: Collaborative NWDC/NPS M&S Research; Moderator: Curtis Blais; Modeling and Simulating Environmental Effects; speakers: Peter Guest, Paul Frederickson & Tom Murphree Environmental Effects Group

  7. TREAT Modeling and Simulation Strategy

    Energy Technology Data Exchange (ETDEWEB)

    DeHart, Mark David [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2015-09-01

    This report summarizes a four-phase process used to describe the strategy in developing modeling and simulation software for the Transient Reactor Test Facility. The four phases of this research and development task are identified as (1) full core transient calculations with feedback, (2) experiment modeling, (3) full core plus experiment simulation and (4) quality assurance. The document describes the four phases, the relationship between these research phases, and anticipated needs within each phase.

  8. Stochastic modeling analysis and simulation

    CERN Document Server

    Nelson, Barry L

    1995-01-01

    A coherent introduction to the techniques for modeling dynamic stochastic systems, this volume also offers a guide to the mathematical, numerical, and simulation tools of systems analysis. Suitable for advanced undergraduates and graduate-level industrial engineers and management science majors, it proposes modeling systems in terms of their simulation, regardless of whether simulation is employed for analysis. Beginning with a view of the conditions that permit a mathematical-numerical analysis, the text explores Poisson and renewal processes, Markov chains in discrete and continuous time, se

  9. Model reduction for circuit simulation

    CERN Document Server

    Hinze, Michael; Maten, E Jan W Ter

    2011-01-01

    Simulation based on mathematical models plays a major role in computer aided design of integrated circuits (ICs). Decreasing structure sizes, increasing packing densities and driving frequencies require the use of refined mathematical models, and to take into account secondary, parasitic effects. This leads to very high dimensional problems which nowadays require simulation times too large for the short time-to-market demands in industry. Modern Model Order Reduction (MOR) techniques present a way out of this dilemma in providing surrogate models which keep the main characteristics of the devi

  10. Modelling and Simulation of Crude Oil Dispersion

    Directory of Open Access Journals (Sweden)

    Abdulfatai JIMOH

    2006-01-01

    Full Text Available This research work was carried out to develop a model equation for the dispersion of crude oil in water. Seven different crude oils (Bonny Light, Antan Terminal, Bonny Medium, Qua Iboe Light, Brass Light Mbede, Forcados Blend and Heavy H were used as the subject crude oils. The developed model equation in this project which is given as...It was developed starting from the equation for the oil dispersion rate in water which is given as...The developed equation was then simulated with the aid of MathCAD 2000 Professional software. The experimental and model results obtained from the simulation of the model equation were plotted on the same axis against time of dispersion. The model results revealed close fittings between the experimental and the model results because the correlation coefficients and the r-square values calculated using Spreadsheet Program were both found to be unity (1.00.

  11. Stochastic heart-rate model can reveal pathologic cardiac dynamics

    Science.gov (United States)

    Kuusela, Tom

    2004-03-01

    A simple one-dimensional Langevin-type stochastic difference equation can simulate the heart-rate fluctuations in a time scale from minutes to hours. The model consists of a deterministic nonlinear part and a stochastic part typical of Gaussian noise, and both parts can be directly determined from measured heart-rate data. Data from healthy subjects typically exhibit the deterministic part with two or more stable fixed points. Studies of 15 congestive heart-failure subjects reveal that the deterministic part of pathologic heart dynamics has no clear stable fixed points. Direct simulations of the stochastic model for normal and pathologic cases can produce statistical parameters similar to those of real subjects. Results directly indicate that pathologic situations simplify the heart-rate control system.

  12. A VRLA battery simulation model

    Energy Technology Data Exchange (ETDEWEB)

    Pascoe, P.E.; Anbuky, A.H. [Invensys Energy Systems NZ Limited, Christchurch (New Zealand)

    2004-05-01

    A valve regulated lead acid (VRLA) battery simulation model is an invaluable tool for the standby power system engineer. The obvious use for such a model is to allow the assessment of battery performance. This may involve determining the influence of cells suffering from state of health (SOH) degradation on the performance of the entire string, or the running of test scenarios to ascertain the most suitable battery size for the application. In addition, it enables the engineer to assess the performance of the overall power system. This includes, for example, running test scenarios to determine the benefits of various load shedding schemes. It also allows the assessment of other power system components, either for determining their requirements and/or vulnerabilities. Finally, a VRLA battery simulation model is vital as a stand alone tool for educational purposes. Despite the fundamentals of the VRLA battery having been established for over 100 years, its operating behaviour is often poorly understood. An accurate simulation model enables the engineer to gain a better understanding of VRLA battery behaviour. A system level multipurpose VRLA battery simulation model is presented. It allows an arbitrary battery (capacity, SOH, number of cells and number of strings) to be simulated under arbitrary operating conditions (discharge rate, ambient temperature, end voltage, charge rate and initial state of charge). The model accurately reflects the VRLA battery discharge and recharge behaviour. This includes the complex start of discharge region known as the coup de fouet. (author)

  13. Modelling and Simulation: An Overview

    NARCIS (Netherlands)

    M.J. McAleer (Michael); F. Chan (Felix); L. Oxley (Les)

    2013-01-01

    textabstractThe papers in this special issue of Mathematics and Computers in Simulation cover the following topics: improving judgmental adjustment of model-based forecasts, whether forecast updates are progressive, on a constrained mixture vector autoregressive model, whether all estimators are bor

  14. General introduction to simulation models

    DEFF Research Database (Denmark)

    Hisham Beshara Halasa, Tariq; Boklund, Anette

    2012-01-01

    Monte Carlo simulation can be defined as a representation of real life systems to gain insight into their functions and to investigate the effects of alternative conditions or actions on the modeled system. Models are a simplification of a system. Most often, it is best to use experiments and field...

  15. Modelling, simulating and optimizing Boilers

    DEFF Research Database (Denmark)

    Sørensen, Kim; Condra, Thomas Joseph; Houbak, Niels

    2003-01-01

    of the boiler has been developed and simulations carried out by means of the Matlab integration routines. The model is prepared as a dynamic model consisting of both ordinary differential equations and algebraic equations, together formulated as a Differential-Algebraic- Equation system. Being able to operate...

  16. Vehicle dynamics modeling and simulation

    CERN Document Server

    Schramm, Dieter; Bardini, Roberto

    2014-01-01

    The authors examine in detail the fundamentals and mathematical descriptions of the dynamics of automobiles. In this context different levels of complexity will be presented, starting with basic single-track models up to complex three-dimensional multi-body models. A particular focus is on the process of establishing mathematical models on the basis of real cars and the validation of simulation results. The methods presented are explained in detail by means of selected application scenarios.

  17. Stochastic models: theory and simulation.

    Energy Technology Data Exchange (ETDEWEB)

    Field, Richard V., Jr.

    2008-03-01

    Many problems in applied science and engineering involve physical phenomena that behave randomly in time and/or space. Examples are diverse and include turbulent flow over an aircraft wing, Earth climatology, material microstructure, and the financial markets. Mathematical models for these random phenomena are referred to as stochastic processes and/or random fields, and Monte Carlo simulation is the only general-purpose tool for solving problems of this type. The use of Monte Carlo simulation requires methods and algorithms to generate samples of the appropriate stochastic model; these samples then become inputs and/or boundary conditions to established deterministic simulation codes. While numerous algorithms and tools currently exist to generate samples of simple random variables and vectors, no cohesive simulation tool yet exists for generating samples of stochastic processes and/or random fields. There are two objectives of this report. First, we provide some theoretical background on stochastic processes and random fields that can be used to model phenomena that are random in space and/or time. Second, we provide simple algorithms that can be used to generate independent samples of general stochastic models. The theory and simulation of random variables and vectors is also reviewed for completeness.

  18. Computational Modeling of Simulation Tests.

    Science.gov (United States)

    1980-06-01

    Mexico , March 1979. 14. Kinney, G. F.,.::. IeiN, .hoce 1h Ir, McMillan, p. 57, 1962. 15. Courant and Friedrichs, ,U: r. on moca an.: Jho...AD 79 275 NEW MEXICO UNIV ALBUGUERGUE ERIC H WANG CIVIL ENGINE-ETC F/6 18/3 COMPUTATIONAL MODELING OF SIMULATION TESTS.(U) JUN 80 6 LEIGH, W CHOWN, B...COMPUTATIONAL MODELING OF SIMULATION TESTS00 0G. Leigh W. Chown B. Harrison Eric H. Wang Civil Engineering Research Facility University of New Mexico

  19. SIMULATION OF COLLECTIVE RISK MODEL

    Directory of Open Access Journals (Sweden)

    Viera Pacáková

    2007-12-01

    Full Text Available The article focuses on providing brief theoretical definitions of the basic terms and methods of modeling and simulations of insurance risks in non-life insurance by means of mathematical and statistical methods using statistical software. While risk assessment of insurance company in connection with its solvency is a rather complex and comprehensible problem, its solution starts with statistical modeling of number and amount of individual claims. Successful solution of these fundamental problems enables solving of curtail problems of insurance such as modeling and simulation of collective risk, premium an reinsurance premium calculation, estimation of probabiliy of ruin etc. The article also presents some essential ideas underlying Monte Carlo methods and their applications to modeling of insurance risk. Solving problem is to find the probability distribution of the collective risk in non-life insurance portfolio. Simulation of the compound distribution function of the aggregate claim amount can be carried out, if the distibution functions of the claim number process and the claim size are assumed given. The Monte Carlo simulation is suitable method to confirm the results of other methods and for treatments of catastrophic claims, when small collectives are studied. Analysis of insurance risks using risk theory is important part of the project Solvency II. Risk theory is analysis of stochastic features of non-life insurance process. The field of application of risk theory has grown rapidly. There is a need to develop the theory into form suitable for practical purposes and demostrate their application. Modern computer simulation techniques open up a wide field of practical applications for risk theory concepts, without requiring the restricive assumptions and sophisticated mathematics. This article presents some comparisons of the traditional actuarial methods and of simulation methods of the collective risk model.

  20. MODELLING, SIMULATING AND OPTIMIZING BOILERS

    DEFF Research Database (Denmark)

    Sørensen, K.; Condra, T.; Houbak, Niels

    2003-01-01

    This paper describes the modelling, simulating and optimizing including experimental verification as being carried out as part of a Ph.D. project being written resp. supervised by the authors. The work covers dynamic performance of both water-tube boilers and fire tube boilers. A detailed dynamic...... model of the boiler has been developed and simulations carried out by means of the Matlab integration routines. The model is prepared as a dynamic model consisting of both ordinary differential equations and algebraic equations, together formulated as a Differential-Algebraic-Equation system. Being able...... to operate a boiler plant dynamically means that the boiler designs must be able to absorb any fluctuations in water level and temperature gradients resulting from the pressure change in the boiler. On the one hand a large water-/steam space may be required, i.e. to build the boiler as big as possible. Due...

  1. Intelligent Mobility Modeling and Simulation

    Science.gov (United States)

    2015-03-04

    cog.cs.drexel.edu/act-r/index.html) •Models sensory / motor performance of human driver or teleoperator 27UNCLASSIFIED: Distribution Statement A. Approved for...U.S. ARMY TANK AUTOMOTIVE RESEARCH, DEVELOPMENT AND ENGINEERING CENTER Intelligent Mobility Modeling and Simulation 1 Dr. P. Jayakumar, S. Arepally...Prescribed by ANSI Std Z39-18 Contents 1. Mobility - Autonomy - Latency Relationship 2. Machine - Human Partnership 3. Development of Shared Control

  2. Revealing the morphological architecture of a shape memory polyurethane by simulation

    Science.gov (United States)

    Hu, Jinlian; Zhang, Cuili; Ji, Fenglong; Li, Xun; Han, Jianping; Wu, You

    2016-07-01

    The lack of specific knowledge of the network structure in shape memory polymers (SMPs) has prevented us from gaining an in-depth understanding of their mechanisms and limited the potential for materials innovation. This paper firstly reveals the unit-cell nanoscale morphological architecture of SMPs by simulation. The phase separated architecture of a segmented shape memory polyurethane (SMPU) with a 30 wt% hard segment content (HSC, 4,4’-diphenylmethane diisocyanate (MDI) and 1,4-butanediol (BDO)) showing good shape memory properties was investigated by dissipative particle dynamics (DPD) simulations. A linked-spherical netpoint-frame phase of MDI, a matrix-switch phase of polycaprolactone (PCL) and a connected-spider-like interphase for BDO were obtained for this SMPU. The BDO interphase can reinforce the MDI network. Based on these simulation results, a three-dimensional (3D) overall morphological architectural model of the SMPU can be established. This theoretical study has verified, enriched and integrated two existing schematic models: one being the morphological model deduced from experiments and the other the frame model for SMPs reported before. It can serve as a theoretical guide for smart polymeric materials design. This method for the simulation of polymer structure at the nanoscale can be extended to many areas such as photonic crystals where nanoscale self-assembly plays a vital role.

  3. MODELLING, SIMULATING AND OPTIMIZING BOILERS

    DEFF Research Database (Denmark)

    Sørensen, Kim; Condra, Thomas Joseph; Houbak, Niels

    2004-01-01

    on the boiler) have been dened. Furthermore a number of constraints related to: minimum and maximum boiler load gradient, minimum boiler size, Shrinking and Swelling and Steam Space Load have been dened. For dening the constraints related to the required boiler volume a dynamic model for simulating the boiler...... performance has been developed. Outputs from the simulations are shrinking and swelling of water level in the drum during for example a start-up of the boiler, these gures combined with the requirements with respect to allowable water level uctuations in the drum denes the requirements with respect to drum...... size. The model has been formulated with a specied building-up of the pressure during the start-up of the plant, i.e. the steam production during start-up of the boiler is output from the model. The steam outputs together with requirements with respect to steam space load have been utilized to dene...

  4. Modeling and Simulation of Nanoindentation

    Science.gov (United States)

    Huang, Sixie; Zhou, Caizhi

    2017-08-01

    Nanoindentation is a hardness test method applied to small volumes of material which can provide some unique effects and spark many related research activities. To fully understand the phenomena observed during nanoindentation tests, modeling and simulation methods have been developed to predict the mechanical response of materials during nanoindentation. However, challenges remain with those computational approaches, because of their length scale, predictive capability, and accuracy. This article reviews recent progress and challenges for modeling and simulation of nanoindentation, including an overview of molecular dynamics, the quasicontinuum method, discrete dislocation dynamics, and the crystal plasticity finite element method, and discusses how to integrate multiscale modeling approaches seamlessly with experimental studies to understand the length-scale effects and microstructure evolution during nanoindentation tests, creating a unique opportunity to establish new calibration procedures for the nanoindentation technique.

  5. Multiscale Stochastic Simulation and Modeling

    Energy Technology Data Exchange (ETDEWEB)

    James Glimm; Xiaolin Li

    2006-01-10

    Acceleration driven instabilities of fluid mixing layers include the classical cases of Rayleigh-Taylor instability, driven by a steady acceleration and Richtmyer-Meshkov instability, driven by an impulsive acceleration. Our program starts with high resolution methods of numerical simulation of two (or more) distinct fluids, continues with analytic analysis of these solutions, and the derivation of averaged equations. A striking achievement has been the systematic agreement we obtained between simulation and experiment by using a high resolution numerical method and improved physical modeling, with surface tension. Our study is accompanies by analysis using stochastic modeling and averaged equations for the multiphase problem. We have quantified the error and uncertainty using statistical modeling methods.

  6. Assessment of Molecular Modeling & Simulation

    Energy Technology Data Exchange (ETDEWEB)

    None

    2002-01-03

    This report reviews the development and applications of molecular and materials modeling in Europe and Japan in comparison to those in the United States. Topics covered include computational quantum chemistry, molecular simulations by molecular dynamics and Monte Carlo methods, mesoscale modeling of material domains, molecular-structure/macroscale property correlations like QSARs and QSPRs, and related information technologies like informatics and special-purpose molecular-modeling computers. The panel's findings include the following: The United States leads this field in many scientific areas. However, Canada has particular strengths in DFT methods and homogeneous catalysis; Europe in heterogeneous catalysis, mesoscale, and materials modeling; and Japan in materials modeling and special-purpose computing. Major government-industry initiatives are underway in Europe and Japan, notably in multi-scale materials modeling and in development of chemistry-capable ab-initio molecular dynamics codes.

  7. Animal models for simulating weightlessness

    Science.gov (United States)

    Morey-Holton, E.; Wronski, T. J.

    1982-01-01

    NASA has developed a rat model to simulate on earth some aspects of the weightlessness alterations experienced in space, i.e., unloading and fluid shifts. Comparison of data collected from space flight and from the head-down rat suspension model suggests that this model system reproduces many of the physiological alterations induced by space flight. Data from various versions of the rat model are virtually identical for the same parameters; thus, modifications of the model for acute, chronic, or metabolic studies do not alter the results as long as the critical components of the model are maintained, i.e., a cephalad shift of fluids and/or unloading of the rear limbs.

  8. Simulation Tool for Inventory Models: SIMIN

    OpenAIRE

    Pratiksha Saxen; Tulsi Kushwaha

    2014-01-01

    In this paper, an integrated simulation optimization model for the inventory system is developed. An effective algorithm is developed to evaluate and analyze the back-end stored simulation results. This paper proposes simulation tool SIMIN (Inventory Simulation) to simulate inventory models. SIMIN is a tool which simulates and compares the results of different inventory models. To overcome various practical restrictive assumptions, SIMIN provides values for a number of performance measurement...

  9. Forced reptation revealed by chain pull-out simulations

    NARCIS (Netherlands)

    Bulacu, Monica; van der Giessen, Erik

    2009-01-01

    We report computation results obtained from extensive molecular dynamics simulations of tensile disentanglement of connector chains placed at the interface between two polymer bulks. Each polymer chain (either belonging to the bulks or being a connector) is treated as a sequence of beads

  10. Acoustic pathways revealed: simulated sound transmission and reception in Cuvier's beaked whale (Ziphius cavirostris).

    Science.gov (United States)

    Cranford, Ted W; Krysl, Petr; Hildebrand, John A

    2008-03-01

    The finite element modeling (FEM) space reported here contains the head of a simulated whale based on CT data sets as well as physical measurements of sound-propagation characteristics of actual tissue samples. Simulated sound sources placed inside and outside of an adult male Cuvier's beaked whale (Ziphius cavirostris) reveal likely sound propagation pathways into and out of the head. Two separate virtual sound sources that were located at the left and right phonic lips produced beams that converged just outside the head. This result supports the notion that dual sound sources can interfere constructively to form a biologically useful and, in fact, excellent sonar beam in front of the animal. The most intriguing FEM results concern pathways by which sounds reach the ears. The simulations reveal a previously undescribed 'gular pathway' for sound reception in Ziphius. Propagated sound pressure waves enter the head from below and between the lower jaws, pass through an opening created by the absence of the medial bony wall of the posterior mandibles, and continue toward the bony ear complexes through the internal mandibular fat bodies. This new pathway has implications for understanding the evolution of underwater hearing in odontocetes. Our model also provides evidence for receive beam directionality, off-axis acoustic shadowing and a plausible mechanism for the long-standing orthodox sound reception pathway in odontocetes. The techniques developed for this study can be used to study acoustic perturbation in a wide variety of marine organisms.

  11. Standard for Models and Simulations

    Science.gov (United States)

    Steele, Martin J.

    2016-01-01

    This NASA Technical Standard establishes uniform practices in modeling and simulation to ensure essential requirements are applied to the design, development, and use of models and simulations (MS), while ensuring acceptance criteria are defined by the program project and approved by the responsible Technical Authority. It also provides an approved set of requirements, recommendations, and criteria with which MS may be developed, accepted, and used in support of NASA activities. As the MS disciplines employed and application areas involved are broad, the common aspects of MS across all NASA activities are addressed. The discipline-specific details of a given MS should be obtained from relevant recommended practices. The primary purpose is to reduce the risks associated with MS-influenced decisions by ensuring the complete communication of the credibility of MS results.

  12. T=S Model to Simulate Regional Economic Development

    Institute of Scientific and Technical Information of China (English)

    WangQing; ChenGuo-jie; ZhangYu; ChenYong

    2003-01-01

    This paper proposes a mechanism theory on regional development by using a modified Logistic model. It reveals regional evolution is an integration of fluctuation in temporal dimension and disparity in spatial dimension. T=S model is established by using Logistic model to simulate the growth of per capita GDP in China from 1990 to 1999. The result shows that T=S model accurately simulates the tracks of economic growth.

  13. T=S Model to Simulate Regional Economic Development

    Institute of Scientific and Technical Information of China (English)

    Wang Qing; Chen Guo-jie; Zhang Yu; Chen Yong

    2003-01-01

    This paper proposes a mechanism theory on regional development by using a modified Logistic model. It reveals regional evolution is an integration of fluctuation in temporal dimcnsion and disparity in spatial dimension. T = S model is established by using Logistic model to simulate the growth of per capita GDP in China from 1990 to 1999. The result shows that T= S model accurately simulates the tracks of economic growth.

  14. Model for Simulation Atmospheric Turbulence

    DEFF Research Database (Denmark)

    Lundtang Petersen, Erik

    1976-01-01

    A method that produces realistic simulations of atmospheric turbulence is developed and analyzed. The procedure makes use of a generalized spectral analysis, often called a proper orthogonal decomposition or the Karhunen-Loève expansion. A set of criteria, emphasizing a realistic appearance, a co....... The method is unique in modeling the three velocity components simultaneously, and it is found that important cross-statistical features are reasonably well-behaved. It is concluded that the model provides a practical, operational simulator of atmospheric turbulence.......A method that produces realistic simulations of atmospheric turbulence is developed and analyzed. The procedure makes use of a generalized spectral analysis, often called a proper orthogonal decomposition or the Karhunen-Loève expansion. A set of criteria, emphasizing a realistic appearance......, a correct spectral shape, and non-Gaussian statistics, is selected in order to evaluate the model turbulence. An actual turbulence record is analyzed in detail providing both a standard for comparison and input statistics for the generalized spectral analysis, which in turn produces a set of orthonormal...

  15. Simulating fiction: individual differences in literature comprehension revealed with FMRI.

    Directory of Open Access Journals (Sweden)

    Annabel D Nijhof

    Full Text Available When we read literary fiction, we are transported to fictional places, and we feel and think along with the characters. Despite the importance of narrative in adult life and during development, the neurocognitive mechanisms underlying fiction comprehension are unclear. We used functional magnetic resonance imaging (fMRI to investigate how individuals differently employ neural networks important for understanding others' beliefs and intentions (mentalizing, and for sensori-motor simulation while listening to excerpts from literary novels. Localizer tasks were used to localize both the cortical motor network and the mentalizing network in participants after they listened to excerpts from literary novels. Results show that participants who had high activation in anterior medial prefrontal cortex (aMPFC; part of the mentalizing network when listening to mentalizing content of literary fiction, had lower motor cortex activity when they listened to action-related content of the story, and vice versa. This qualifies how people differ in their engagement with fiction: some people are mostly drawn into a story by mentalizing about the thoughts and beliefs of others, whereas others engage in literature by simulating more concrete events such as actions. This study provides on-line neural evidence for the existence of qualitatively different styles of moving into literary worlds, and adds to a growing body of literature showing the potential to study narrative comprehension with neuroimaging methods.

  16. Simulating fiction: individual differences in literature comprehension revealed with FMRI.

    Science.gov (United States)

    Nijhof, Annabel D; Willems, Roel M

    2015-01-01

    When we read literary fiction, we are transported to fictional places, and we feel and think along with the characters. Despite the importance of narrative in adult life and during development, the neurocognitive mechanisms underlying fiction comprehension are unclear. We used functional magnetic resonance imaging (fMRI) to investigate how individuals differently employ neural networks important for understanding others' beliefs and intentions (mentalizing), and for sensori-motor simulation while listening to excerpts from literary novels. Localizer tasks were used to localize both the cortical motor network and the mentalizing network in participants after they listened to excerpts from literary novels. Results show that participants who had high activation in anterior medial prefrontal cortex (aMPFC; part of the mentalizing network) when listening to mentalizing content of literary fiction, had lower motor cortex activity when they listened to action-related content of the story, and vice versa. This qualifies how people differ in their engagement with fiction: some people are mostly drawn into a story by mentalizing about the thoughts and beliefs of others, whereas others engage in literature by simulating more concrete events such as actions. This study provides on-line neural evidence for the existence of qualitatively different styles of moving into literary worlds, and adds to a growing body of literature showing the potential to study narrative comprehension with neuroimaging methods.

  17. Advances in Intelligent Modelling and Simulation Simulation Tools and Applications

    CERN Document Server

    Oplatková, Zuzana; Carvalho, Marco; Kisiel-Dorohinicki, Marek

    2012-01-01

    The human capacity to abstract complex systems and phenomena into simplified models has played a critical role in the rapid evolution of our modern industrial processes and scientific research. As a science and an art, Modelling and Simulation have been one of the core enablers of this remarkable human trace, and have become a topic of great importance for researchers and practitioners. This book was created to compile some of the most recent concepts, advances, challenges and ideas associated with Intelligent Modelling and Simulation frameworks, tools and applications. The first chapter discusses the important aspects of a human interaction and the correct interpretation of results during simulations. The second chapter gets to the heart of the analysis of entrepreneurship by means of agent-based modelling and simulations. The following three chapters bring together the central theme of simulation frameworks, first describing an agent-based simulation framework, then a simulator for electrical machines, and...

  18. Verifying and Validating Simulation Models

    Energy Technology Data Exchange (ETDEWEB)

    Hemez, Francois M. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2015-02-23

    This presentation is a high-level discussion of the Verification and Validation (V&V) of computational models. Definitions of V&V are given to emphasize that “validation” is never performed in a vacuum; it accounts, instead, for the current state-of-knowledge in the discipline considered. In particular comparisons between physical measurements and numerical predictions should account for their respective sources of uncertainty. The differences between error (bias), aleatoric uncertainty (randomness) and epistemic uncertainty (ignorance, lack-of- knowledge) are briefly discussed. Four types of uncertainty in physics and engineering are discussed: 1) experimental variability, 2) variability and randomness, 3) numerical uncertainty and 4) model-form uncertainty. Statistical sampling methods are available to propagate, and analyze, variability and randomness. Numerical uncertainty originates from the truncation error introduced by the discretization of partial differential equations in time and space. Model-form uncertainty is introduced by assumptions often formulated to render a complex problem more tractable and amenable to modeling and simulation. The discussion concludes with high-level guidance to assess the “credibility” of numerical simulations, which stems from the level of rigor with which these various sources of uncertainty are assessed and quantified.

  19. In vitro protease cleavage and computer simulations reveal the HIV-1 capsid maturation pathway

    Science.gov (United States)

    Ning, Jiying; Erdemci-Tandogan, Gonca; Yufenyuy, Ernest L.; Wagner, Jef; Himes, Benjamin A.; Zhao, Gongpu; Aiken, Christopher; Zandi, Roya; Zhang, Peijun

    2016-12-01

    HIV-1 virions assemble as immature particles containing Gag polyproteins that are processed by the viral protease into individual components, resulting in the formation of mature infectious particles. There are two competing models for the process of forming the mature HIV-1 core: the disassembly and de novo reassembly model and the non-diffusional displacive model. To study the maturation pathway, we simulate HIV-1 maturation in vitro by digesting immature particles and assembled virus-like particles with recombinant HIV-1 protease and monitor the process with biochemical assays and cryoEM structural analysis in parallel. Processing of Gag in vitro is accurate and efficient and results in both soluble capsid protein and conical or tubular capsid assemblies, seemingly converted from immature Gag particles. Computer simulations further reveal probable assembly pathways of HIV-1 capsid formation. Combining the experimental data and computer simulations, our results suggest a sequential combination of both displacive and disassembly/reassembly processes for HIV-1 maturation.

  20. Reveal protein dynamics by combining computer simulation and neutron scattering

    Science.gov (United States)

    Hong, Liang; Smith, Jeremy; CenterMolecular Biophysics Team

    2014-03-01

    Protein carries out most functions in living things on the earth through characteristic modulation of its three-dimensional structure over time. Understanding the microscopic nature of the protein internal motion and its connection to the function and structure of the biomolecule is a central topic in biophysics, and of great practical importance for drug design, study of diseases, and the development of renewable energy, etc. Under physiological conditions, protein exhibits a complex dynamics landscape, i.e., a variety of diffusive and conformational motions occur on similar time and length scales. This variety renders difficult the derivation of a simplified description of protein internal motions in terms of a small number of distinct, additive components. This difficulty is overcome by our work using a combined approach of Molecular Dynamics (MD) simulations and the Neutron Scattering experiments. Our approach enables distinct protein motions to be characterized separately, furnishing an in-depth understanding of the connection between protein structure, dynamics and function.

  1. MODELLING, SIMULATING AND OPTIMIZING BOILERS

    DEFF Research Database (Denmark)

    Sørensen, Kim; Condra, Thomas Joseph; Houbak, Niels

    2004-01-01

    on the boiler) have been dened. Furthermore a number of constraints related to: minimum and maximum boiler load gradient, minimum boiler size, Shrinking and Swelling and Steam Space Load have been dened. For dening the constraints related to the required boiler volume a dynamic model for simulating the boiler...... size. The model has been formulated with a specied building-up of the pressure during the start-up of the plant, i.e. the steam production during start-up of the boiler is output from the model. The steam outputs together with requirements with respect to steam space load have been utilized to dene...... of the boiler is (with an acceptable accuracy) proportional with the volume of the boiler. For the dynamic operation capability a cost function penalizing limited dynamic operation capability and vise-versa has been dened. The main idea is that it by mean of the parameters in this function is possible to t its...

  2. Simulated annealing model of acupuncture

    Science.gov (United States)

    Shang, Charles; Szu, Harold

    2015-05-01

    The growth control singularity model suggests that acupuncture points (acupoints) originate from organizers in embryogenesis. Organizers are singular points in growth control. Acupuncture can cause perturbation of a system with effects similar to simulated annealing. In clinical trial, the goal of a treatment is to relieve certain disorder which corresponds to reaching certain local optimum in simulated annealing. The self-organizing effect of the system is limited and related to the person's general health and age. Perturbation at acupoints can lead a stronger local excitation (analogous to higher annealing temperature) compared to perturbation at non-singular points (placebo control points). Such difference diminishes as the number of perturbed points increases due to the wider distribution of the limited self-organizing activity. This model explains the following facts from systematic reviews of acupuncture trials: 1. Properly chosen single acupoint treatment for certain disorder can lead to highly repeatable efficacy above placebo 2. When multiple acupoints are used, the result can be highly repeatable if the patients are relatively healthy and young but are usually mixed if the patients are old, frail and have multiple disorders at the same time as the number of local optima or comorbidities increases. 3. As number of acupoints used increases, the efficacy difference between sham and real acupuncture often diminishes. It predicted that the efficacy of acupuncture is negatively correlated to the disease chronicity, severity and patient's age. This is the first biological - physical model of acupuncture which can predict and guide clinical acupuncture research.

  3. Uterine Contraction Modeling and Simulation

    Science.gov (United States)

    Liu, Miao; Belfore, Lee A.; Shen, Yuzhong; Scerbo, Mark W.

    2010-01-01

    Building a training system for medical personnel to properly interpret fetal heart rate tracing requires developing accurate models that can relate various signal patterns to certain pathologies. In addition to modeling the fetal heart rate signal itself, the change of uterine pressure that bears strong relation to fetal heart rate and provides indications of maternal and fetal status should also be considered. In this work, we have developed a group of parametric models to simulate uterine contractions during labor and delivery. Through analysis of real patient records, we propose to model uterine contraction signals by three major components: regular contractions, impulsive noise caused by fetal movements, and low amplitude noise invoked by maternal breathing and measuring apparatus. The regular contractions are modeled by an asymmetric generalized Gaussian function and least squares estimation is used to compute the parameter values of the asymmetric generalized Gaussian function based on uterine contractions of real patients. Regular contractions are detected based on thresholding and derivative analysis of uterine contractions. Impulsive noise caused by fetal movements and low amplitude noise by maternal breathing and measuring apparatus are modeled by rational polynomial functions and Perlin noise, respectively. Experiment results show the synthesized uterine contractions can mimic the real uterine contractions realistically, demonstrating the effectiveness of the proposed algorithm.

  4. Mechanical properties of a complete microtubule revealed through molecular dynamics simulation.

    Science.gov (United States)

    Wells, David B; Aksimentiev, Aleksei

    2010-07-21

    Microtubules (MTs) are the largest type of cellular filament, essential in processes ranging from mitosis and meiosis to flagellar motility. Many of the processes depend critically on the mechanical properties of the MT, but the elastic moduli, notably the Young's modulus, are not directly revealed in experiment, which instead measures either flexural rigidity or response to radial deformation. Molecular dynamics (MD) is a method that allows the mechanical properties of single biomolecules to be investigated through computation. Typically, MD requires an atomic resolution structure of the molecule, which is unavailable for many systems, including MTs. By combining structural information from cryo-electron microscopy and electron crystallography, we have constructed an all-atom model of a complete MT and used MD to determine its mechanical properties. The simulations revealed nonlinear axial stress-strain behavior featuring a pronounced softening under extension, a possible plastic deformation transition under radial compression, and a distinct asymmetry in response to the two senses of twist. This work demonstrates the possibility of combining different levels of structural information to produce all-atom models suitable for quantitative MD simulations, which extends the range of systems amenable to the MD method and should enable exciting advances in our microscopic knowledge of biology. Copyright (c) 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

  5. Optimisation of a Crossdocking Distribution Centre Simulation Model

    CERN Document Server

    Adewunmi, Adrian

    2010-01-01

    This paper reports on continuing research into the modelling of an order picking process within a Crossdocking distribution centre using Simulation Optimisation. The aim of this project is to optimise a discrete event simulation model and to understand factors that affect finding its optimal performance. Our initial investigation revealed that the precision of the selected simulation output performance measure and the number of replications required for the evaluation of the optimisation objective function through simulation influences the ability of the optimisation technique. We experimented with Common Random Numbers, in order to improve the precision of our simulation output performance measure, and intended to use the number of replications utilised for this purpose as the initial number of replications for the optimisation of our Crossdocking distribution centre simulation model. Our results demonstrate that we can improve the precision of our selected simulation output performance measure value using C...

  6. Applications of Joint Tactical Simulation Modeling

    Science.gov (United States)

    1997-12-01

    NAVAL POSTGRADUATE SCHOOL Monterey, California THESIS APPLICATIONS OF JOINT TACTICAL SIMULATION MODELING by Steve VanLandingham December 1997...SUBTITLE APPLICATIONS OF JOINT TACTICAL SIMULATION MODELING 5. FUNDING NUMBERS 6. AUTHOR(S) VanLandingham, Steve 7. PERFORMING ORGANIZATION NAME(S...release; distribution is unlimited. APPLICATIONS OF JOINT TACTICAL SIMULATION MODELING Steve VanLandingham Lieutenant, United States Navy B.S

  7. Benchmark simulation models, quo vadis?

    DEFF Research Database (Denmark)

    Jeppsson, U.; Alex, J; Batstone, D. J.

    2013-01-01

    As the work of the IWA Task Group on Benchmarking of Control Strategies for wastewater treatment plants (WWTPs) is coming to an end, it is essential to disseminate the knowledge gained. For this reason, all authors of the IWA Scientific and Technical Report on benchmarking have come together to p...... already being done within the context of the benchmarking simulation models (BSMs) or applicable work in the wider literature. Of key importance is increasing capability, usability and transparency of the BSM package while avoiding unnecessary complexity. © IWA Publishing 2013....... and spatial extension, process modifications within the WWTP, the realism of models, control strategy extensions and the potential for new evaluation tools within the existing benchmark system. We find that there are major opportunities for application within all of these areas, either from existing work...

  8. SWEEPOP a simulation model for Target Simulation Mode minesweeping

    NARCIS (Netherlands)

    Keus, H.E.; Beckers, A.L.D.; Cleophas, P.L.H.

    2005-01-01

    SWEEPOP is a flexible model that simulates the physical interaction between objects in a maritime underwater environment. The model was built to analyse the deployment and the performance of a Target Simulation Mode (TSM) minesweeping system for the Royal Netherlands Navy (RNLN) and to support its p

  9. Techniques and Simulation Models in Risk Management

    OpenAIRE

    Mirela GHEORGHE

    2012-01-01

    In the present paper, the scientific approach of the research starts from the theoretical framework of the simulation concept and then continues in the setting of the practical reality, thus providing simulation models for a broad range of inherent risks specific to any organization and simulation of those models, using the informatics instrument @Risk (Palisade). The reason behind this research lies in the need for simulation models that will allow the person in charge with decision taking i...

  10. Towards Better Coupling of Hydrological Simulation Models

    Science.gov (United States)

    Penton, D.; Stenson, M.; Leighton, B.; Bridgart, R.

    2012-12-01

    -step feedbacks. There was no obvious way to add daily time-step feedbacks without incurring a considerable performance penalty. The Delft-FEWS system connects hydrological models for flood warnings and forecasts in a workflow system. It provides a range of custom facilities for connecting real-time data services. A Delft-FEWS system was constructed to connect a series of eWater Source hydrological models using the batch forecast mode to orchestrate a time-stepping system. The system coupled a series of river models running daily through a service interface. The implementation did not easily support interoperability with other models; however, using command line calls and the file-system did allow a level of language independence. The case-studies covered the coupling of hydrological models through tight interfaces (OpenMI), broad scientific workflow software (Trident) and a tailored execution engine (Delft-FEWS). We found that no approach was objectively better than any other approach. OpenMI had the most flexible interfaces, Trident the best handling of provenance and Delft-FEWS provided a significant set of tools for ingesting and transforming data. The case studies revealed a need for stable execution wrappers, patterns for efficient cross-language interoperability, targeted semantics for hydrological simulation and better handling of daily simulation.

  11. Bridging experiments, models and simulations

    DEFF Research Database (Denmark)

    Carusi, Annamaria; Burrage, Kevin; Rodríguez, Blanca

    2012-01-01

    Computational models in physiology often integrate functional and structural information from a large range of spatiotemporal scales from the ionic to the whole organ level. Their sophistication raises both expectations and skepticism concerning how computational methods can improve our understan...... that contributes to defining the specific aspects of cardiac electrophysiology the MSE system targets, rather than being only an external test, and that this is driven by advances in experimental and computational methods and the combination of both....... of biovariability; 2) testing and developing robust techniques and tools as a prerequisite to conducting physiological investigations; 3) defining and adopting standards to facilitate the interoperability of experiments, models, and simulations; 4) and understanding physiological validation as an iterative process...... understanding of living organisms and also how they can reduce, replace, and refine animal experiments. A fundamental requirement to fulfill these expectations and achieve the full potential of computational physiology is a clear understanding of what models represent and how they can be validated. The present...

  12. Ligand induced conformational changes of the human serotonin transporter revealed by molecular dynamics simulations.

    Directory of Open Access Journals (Sweden)

    Heidi Koldsø

    Full Text Available The competitive inhibitor cocaine and the non-competitive inhibitor ibogaine induce different conformational states of the human serotonin transporter. It has been shown from accessibility experiments that cocaine mainly induces an outward-facing conformation, while the non-competitive inhibitor ibogaine, and its active metabolite noribogaine, have been proposed to induce an inward-facing conformation of the human serotonin transporter similar to what has been observed for the endogenous substrate, serotonin. The ligand induced conformational changes within the human serotonin transporter caused by these three different types of ligands, substrate, non-competitive and competitive inhibitors, are studied from multiple atomistic molecular dynamics simulations initiated from a homology model of the human serotonin transporter. The results reveal that diverse conformations of the human serotonin transporter are captured from the molecular dynamics simulations depending on the type of the ligand bound. The inward-facing conformation of the human serotonin transporter is reached with noribogaine bound, and this state resembles a previously identified inward-facing conformation of the human serotonin transporter obtained from molecular dynamics simulation with bound substrate, but also a recently published inward-facing conformation of a bacterial homolog, the leucine transporter from Aquifex Aoelicus. The differences observed in ligand induced behavior are found to originate from different interaction patterns between the ligands and the protein. Such atomic-level understanding of how an inhibitor can dictate the conformational response of a transporter by ligand binding may be of great importance for future drug design.

  13. Ligand induced conformational changes of the human serotonin transporter revealed by molecular dynamics simulations.

    Science.gov (United States)

    Koldsø, Heidi; Autzen, Henriette Elisabeth; Grouleff, Julie; Schiøtt, Birgit

    2013-01-01

    The competitive inhibitor cocaine and the non-competitive inhibitor ibogaine induce different conformational states of the human serotonin transporter. It has been shown from accessibility experiments that cocaine mainly induces an outward-facing conformation, while the non-competitive inhibitor ibogaine, and its active metabolite noribogaine, have been proposed to induce an inward-facing conformation of the human serotonin transporter similar to what has been observed for the endogenous substrate, serotonin. The ligand induced conformational changes within the human serotonin transporter caused by these three different types of ligands, substrate, non-competitive and competitive inhibitors, are studied from multiple atomistic molecular dynamics simulations initiated from a homology model of the human serotonin transporter. The results reveal that diverse conformations of the human serotonin transporter are captured from the molecular dynamics simulations depending on the type of the ligand bound. The inward-facing conformation of the human serotonin transporter is reached with noribogaine bound, and this state resembles a previously identified inward-facing conformation of the human serotonin transporter obtained from molecular dynamics simulation with bound substrate, but also a recently published inward-facing conformation of a bacterial homolog, the leucine transporter from Aquifex Aoelicus. The differences observed in ligand induced behavior are found to originate from different interaction patterns between the ligands and the protein. Such atomic-level understanding of how an inhibitor can dictate the conformational response of a transporter by ligand binding may be of great importance for future drug design.

  14. Distributed simulation a model driven engineering approach

    CERN Document Server

    Topçu, Okan; Oğuztüzün, Halit; Yilmaz, Levent

    2016-01-01

    Backed by substantive case studies, the novel approach to software engineering for distributed simulation outlined in this text demonstrates the potent synergies between model-driven techniques, simulation, intelligent agents, and computer systems development.

  15. Numerical simulations and infrared spectro-interferometry reveal the wind collision region in γ2 Velorum

    Science.gov (United States)

    Lamberts, A.; Millour, F.; Liermann, A.; Dessart, L.; Driebe, T.; Duvert, G.; Finsterle, W.; Girault, V.; Massi, F.; Petrov, R. G.; Schmutz, W.; Weigelt, G.; Chesneau, O.

    2017-07-01

    Colliding stellar winds in massive binary systems have been studied through their radio, optical lines and strong X-ray emission for decades. More recently, near-infrared spectro-interferometric observations have become available in a few systems, but isolating the contribution from the individual stars and the wind collision region still remains a challenge. In this paper, we study the colliding wind binary γ2 Velorum and aim at identifying the wind collision zone from infrared interferometric data, which provide unique spatial information to determine the wind properties. Our analysis is based on multi-epoch Very Large Telescope Interferometer/Astronomical Multi-BEam Recombiner (VLTI/AMBER) data that allows us to separate the spectral components of both stars. First, we determine the astrometric solution of the binary and confirm previous distance measurements. We then analyse the spectra of the individual stars, showing that the O star spectrum is peculiar within its class. Then, we perform three-dimensional hydrodynamic simulations of the system from which we extract model images, visibility curves and closure phases that can be directly compared with the observed data. The hydrodynamic simulations reveal the 3D spiral structure of the wind collision region, which results in phase-dependent emission maps. Our model visibility curves and closure phases provide a good match when the wind collision region accounts for 3-10 per cent γ2 Vel's total flux in the near-infrared. The dialogue between hydrodynamic simulations, radiative transfer models and observations allows us to fully exploit the observations. Similar efforts will be crucial to study circumstellar environments with the new generation of VLTI instruments like GRAVITY and MATISSE.

  16. Benchmark simulation models, quo vadis?

    Science.gov (United States)

    Jeppsson, U; Alex, J; Batstone, D J; Benedetti, L; Comas, J; Copp, J B; Corominas, L; Flores-Alsina, X; Gernaey, K V; Nopens, I; Pons, M-N; Rodríguez-Roda, I; Rosen, C; Steyer, J-P; Vanrolleghem, P A; Volcke, E I P; Vrecko, D

    2013-01-01

    As the work of the IWA Task Group on Benchmarking of Control Strategies for wastewater treatment plants (WWTPs) is coming to an end, it is essential to disseminate the knowledge gained. For this reason, all authors of the IWA Scientific and Technical Report on benchmarking have come together to provide their insights, highlighting areas where knowledge may still be deficient and where new opportunities are emerging, and to propose potential avenues for future development and application of the general benchmarking framework and its associated tools. The paper focuses on the topics of temporal and spatial extension, process modifications within the WWTP, the realism of models, control strategy extensions and the potential for new evaluation tools within the existing benchmark system. We find that there are major opportunities for application within all of these areas, either from existing work already being done within the context of the benchmarking simulation models (BSMs) or applicable work in the wider literature. Of key importance is increasing capability, usability and transparency of the BSM package while avoiding unnecessary complexity.

  17. Structured building model reduction toward parallel simulation

    Energy Technology Data Exchange (ETDEWEB)

    Dobbs, Justin R. [Cornell University; Hencey, Brondon M. [Cornell University

    2013-08-26

    Building energy model reduction exchanges accuracy for improved simulation speed by reducing the number of dynamical equations. Parallel computing aims to improve simulation times without loss of accuracy but is poorly utilized by contemporary simulators and is inherently limited by inter-processor communication. This paper bridges these disparate techniques to implement efficient parallel building thermal simulation. We begin with a survey of three structured reduction approaches that compares their performance to a leading unstructured method. We then use structured model reduction to find thermal clusters in the building energy model and allocate processing resources. Experimental results demonstrate faster simulation and low error without any interprocessor communication.

  18. Simulation and Modeling Methodologies, Technologies and Applications

    CERN Document Server

    Filipe, Joaquim; Kacprzyk, Janusz; Pina, Nuno

    2014-01-01

    This book includes extended and revised versions of a set of selected papers from the 2012 International Conference on Simulation and Modeling Methodologies, Technologies and Applications (SIMULTECH 2012) which was sponsored by the Institute for Systems and Technologies of Information, Control and Communication (INSTICC) and held in Rome, Italy. SIMULTECH 2012 was technically co-sponsored by the Society for Modeling & Simulation International (SCS), GDR I3, Lionphant Simulation, Simulation Team and IFIP and held in cooperation with AIS Special Interest Group of Modeling and Simulation (AIS SIGMAS) and the Movimento Italiano Modellazione e Simulazione (MIMOS).

  19. An introduction to enterprise modeling and simulation

    Energy Technology Data Exchange (ETDEWEB)

    Ostic, J.K.; Cannon, C.E. [Los Alamos National Lab., NM (United States). Technology Modeling and Analysis Group

    1996-09-01

    As part of an ongoing effort to continuously improve productivity, quality, and efficiency of both industry and Department of Energy enterprises, Los Alamos National Laboratory is investigating various manufacturing and business enterprise simulation methods. A number of enterprise simulation software models are being developed to enable engineering analysis of enterprise activities. In this document the authors define the scope of enterprise modeling and simulation efforts, and review recent work in enterprise simulation at Los Alamos National Laboratory as well as at other industrial, academic, and research institutions. References of enterprise modeling and simulation methods and a glossary of enterprise-related terms are provided.

  20. A physiological production model for cacao : results of model simulations

    NARCIS (Netherlands)

    Zuidema, P.A.; Leffelaar, P.A.

    2002-01-01

    CASE2 is a physiological model for cocoa (Theobroma cacao L.) growth and yield. This report introduces the CAcao Simulation Engine for water-limited production in a non-technical way and presents simulation results obtained with the model.

  1. A physiological production model for cacao : results of model simulations

    NARCIS (Netherlands)

    Zuidema, P.A.; Leffelaar, P.A.

    2002-01-01

    CASE2 is a physiological model for cocoa (Theobroma cacao L.) growth and yield. This report introduces the CAcao Simulation Engine for water-limited production in a non-technical way and presents simulation results obtained with the model.

  2. Simulation modeling and analysis with Arena

    CERN Document Server

    Altiok, Tayfur

    2007-01-01

    Simulation Modeling and Analysis with Arena is a highly readable textbook which treats the essentials of the Monte Carlo discrete-event simulation methodology, and does so in the context of a popular Arena simulation environment.” It treats simulation modeling as an in-vitro laboratory that facilitates the understanding of complex systems and experimentation with what-if scenarios in order to estimate their performance metrics. The book contains chapters on the simulation modeling methodology and the underpinnings of discrete-event systems, as well as the relevant underlying probability, statistics, stochastic processes, input analysis, model validation and output analysis. All simulation-related concepts are illustrated in numerous Arena examples, encompassing production lines, manufacturing and inventory systems, transportation systems, and computer information systems in networked settings.· Introduces the concept of discrete event Monte Carlo simulation, the most commonly used methodology for modeli...

  3. Nonsmooth Modeling and Simulation for Switched Circuits

    CERN Document Server

    Acary, Vincent; Brogliato, Bernard

    2011-01-01

    "Nonsmooth Modeling and Simulation for Switched Circuits" concerns the modeling and the numerical simulation of switched circuits with the nonsmooth dynamical systems (NSDS) approach, using piecewise-linear and multivalued models of electronic devices like diodes, transistors, switches. Numerous examples (ranging from introductory academic circuits to various types of power converters) are analyzed and many simulation results obtained with the INRIA open-source SICONOS software package are presented. Comparisons with SPICE and hybrid methods demonstrate the power of the NSDS approach

  4. Juno model rheometry and simulation

    Science.gov (United States)

    Sampl, Manfred; Macher, Wolfgang; Oswald, Thomas; Plettemeier, Dirk; Rucker, Helmut O.; Kurth, William S.

    2016-10-01

    The experiment Waves aboard the Juno spacecraft, which will arrive at its target planet Jupiter in 2016, was devised to study the plasma and radio waves of the Jovian magnetosphere. We analyzed the Waves antennas, which consist of two nonparallel monopoles operated as a dipole. For this investigation we applied two independent methods: the experimental technique, rheometry, which is based on a downscaled model of the spacecraft to measure the antenna properties in an electrolytic tank and numerical simulations, based on commercial computer codes, from which the quantities of interest (antenna impedances and effective length vectors) are calculated. In this article we focus on the results for the low-frequency range up to about 4 MHz, where the antenna system is in the quasi-static regime. Our findings show that there is a significant deviation of the effective length vectors from the physical monopole directions, caused by the presence of the conducting spacecraft body. The effective axes of the antenna monopoles are offset from the mechanical axes by more than 30°, and effective lengths show a reduction to about 60% of the antenna rod lengths. The antennas' mutual capacitances are small compared to the self-capacitances, and the latter are almost the same for the two monopoles. The overall performance of the antennas in dipole configuration is very stable throughout the frequency range up to about 4-5 MHz and therefore can be regarded as the upper frequency bound below which the presented quasi-static results are applicable.

  5. Network Modeling and Simulation A Practical Perspective

    CERN Document Server

    Guizani, Mohsen; Khan, Bilal

    2010-01-01

    Network Modeling and Simulation is a practical guide to using modeling and simulation to solve real-life problems. The authors give a comprehensive exposition of the core concepts in modeling and simulation, and then systematically address the many practical considerations faced by developers in modeling complex large-scale systems. The authors provide examples from computer and telecommunication networks and use these to illustrate the process of mapping generic simulation concepts to domain-specific problems in different industries and disciplines. Key features: Provides the tools and strate

  6. Microbial mediation of biogeochemical cycles revealed by simulation of global changes with soil transplant and cropping.

    Science.gov (United States)

    Zhao, Mengxin; Xue, Kai; Wang, Feng; Liu, Shanshan; Bai, Shijie; Sun, Bo; Zhou, Jizhong; Yang, Yunfeng

    2014-10-01

    Despite microbes' key roles in driving biogeochemical cycles, the mechanism of microbe-mediated feedbacks to global changes remains elusive. Recently, soil transplant has been successfully established as a proxy to simulate climate changes, as the current trend of global warming coherently causes range shifts toward higher latitudes. Four years after southward soil transplant over large transects in China, we found that microbial functional diversity was increased, in addition to concurrent changes in microbial biomass, soil nutrient content and functional processes involved in the nitrogen cycle. However, soil transplant effects could be overridden by maize cropping, which was attributed to a negative interaction. Strikingly, abundances of nitrogen and carbon cycle genes were increased by these field experiments simulating global change, coinciding with higher soil nitrification potential and carbon dioxide (CO2) efflux. Further investigation revealed strong correlations between carbon cycle genes and CO2 efflux in bare soil but not cropped soil, and between nitrogen cycle genes and nitrification. These findings suggest that changes of soil carbon and nitrogen cycles by soil transplant and cropping were predictable by measuring microbial functional potentials, contributing to a better mechanistic understanding of these soil functional processes and suggesting a potential to incorporate microbial communities in greenhouse gas emission modeling.

  7. Stochastic simulation of notch signaling reveals novel factors that mediate the differentiation of neural stem cells.

    Science.gov (United States)

    Tzou, Wen-Shyong; Lo, Ying-Tsang; Pai, Tun-Wen; Hu, Chin-Hwa; Li, Chung-Hao

    2014-07-01

    Notch signaling controls cell fate decisions and regulates multiple biological processes, such as cell proliferation, differentiation, and apoptosis. Computational modeling of the deterministic simulation of Notch signaling has provided important insight into the possible molecular mechanisms that underlie the switch from the undifferentiated stem cell to the differentiated cell. Here, we constructed a stochastic model of a Notch signaling model containing Hes1, Notch1, RBP-Jk, Mash1, Hes6, and Delta. mRNA and protein were represented as a discrete state, and 334 reactions were employed for each biochemical reaction using a graphics processing unit-accelerated Gillespie scheme. We employed the tuning of 40 molecular mechanisms and revealed several potential mediators capable of enabling the switch from cell stemness to differentiation. These effective mediators encompass different aspects of cellular regulations, including the nuclear transport of Hes1, the degradation of mRNA (Hes1 and Notch1) and protein (Notch1), the association between RBP-Jk and Notch intracellular domain (NICD), and the cleavage efficiency of the NICD. These mechanisms overlap with many modifiers that have only recently been discovered to modulate the Notch signaling output, including microRNA action, ubiquitin-mediated proteolysis, and the competitive binding of the RBP-Jk-DNA complex. Moreover, we identified the degradation of Hes1 mRNA and nuclear transport of Hes1 as the dominant mechanisms that were capable of abolishing the cell state transition induced by other molecular mechanisms.

  8. VHDL simulation with access to transistor models

    Science.gov (United States)

    Gibson, J.

    1991-01-01

    Hardware description languages such as VHDL have evolved to aid in the design of systems with large numbers of elements and a wide range of electronic and logical abstractions. For high performance circuits, behavioral models may not be able to efficiently include enough detail to give designers confidence in a simulation's accuracy. One option is to provide a link between the VHDL environment and a transistor level simulation environment. The coupling of the Vantage Analysis Systems VHDL simulator and the NOVA simulator provides the combination of VHDL modeling and transistor modeling.

  9. Modeling and Simulation of Low Voltage Arcs

    NARCIS (Netherlands)

    Ghezzi, L.; Balestrero, A.

    2010-01-01

    Modeling and Simulation of Low Voltage Arcs is an attempt to improve the physical understanding, mathematical modeling and numerical simulation of the electric arcs that are found during current interruptions in low voltage circuit breakers. An empirical description is gained by refined electrical

  10. Modeling and Simulation of Low Voltage Arcs

    NARCIS (Netherlands)

    Ghezzi, L.; Balestrero, A.

    2010-01-01

    Modeling and Simulation of Low Voltage Arcs is an attempt to improve the physical understanding, mathematical modeling and numerical simulation of the electric arcs that are found during current interruptions in low voltage circuit breakers. An empirical description is gained by refined electrical m

  11. Whole-building Hygrothermal Simulation Model

    DEFF Research Database (Denmark)

    Rode, Carsten; Grau, Karl

    2003-01-01

    An existing integrated simulation tool for dynamic thermal simulation of building was extended with a transient model for moisture release and uptake in building materials. Validation of the new model was begun with comparison against measurements in an outdoor test cell furnished with single mat...

  12. Whole-building Hygrothermal Simulation Model

    DEFF Research Database (Denmark)

    Rode, Carsten; Grau, Karl

    2003-01-01

    An existing integrated simulation tool for dynamic thermal simulation of building was extended with a transient model for moisture release and uptake in building materials. Validation of the new model was begun with comparison against measurements in an outdoor test cell furnished with single...... materials. Almost quasi-steady, cyclic experiments were used to compare the indoor humidity variation and the numerical results of the integrated simulation tool with the new moisture model. Except for the case with chipboard as furnishing, the predictions of indoor humidity with the detailed model were...

  13. Simulation model of metallurgical production management

    Directory of Open Access Journals (Sweden)

    P. Šnapka

    2013-07-01

    Full Text Available This article is focused to the problems of the metallurgical production process intensification. The aim is the explaining of simulation model which presents metallurgical production management system adequated to new requirements. The knowledge of a dynamic behavior and features of metallurgical production system and its management are needed to this model creation. Characteristics which determine the dynamics of metallurgical production process are characterized. Simulation model is structured as functional blocks and their linkages with regard to organizational and temporal hierarchy of their actions. The creation of presented simulation model is based on theoretical findings of regulation, hierarchical systems and optimization.

  14. Potential Role of the Last Half Repeat in TAL Effectors Revealed by a Molecular Simulation Study

    Directory of Open Access Journals (Sweden)

    Hua Wan

    2016-01-01

    Full Text Available TAL effectors (TALEs contain a modular DNA-binding domain that is composed of tandem repeats. In all naturally occurring TALEs, the end of tandem repeats is invariantly a truncated half repeat. To investigate the potential role of the last half repeat in TALEs, we performed comparative molecular dynamics simulations for the crystal structure of DNA-bound TALE AvrBs3 lacking the last half repeat and its modeled structure having the last half repeat. The structural stability analysis indicates that the modeled system is more stable than the nonmodeled system. Based on the principle component analysis, it is found that the AvrBs3 increases its structural compactness in the presence of the last half repeat. The comparison of DNA groove parameters of the two systems implies that the last half repeat also causes the change of DNA major groove binding efficiency. The following calculation of hydrogen bond reveals that, by stabilizing the phosphate binding with DNA at the C-terminus, the last half repeat helps to adopt a compact conformation at the protein-DNA interface. It further mediates more contacts between TAL repeats and DNA nucleotide bases. Finally, we suggest that the last half repeat is required for the high-efficient recognition of DNA by TALE.

  15. Potential Role of the Last Half Repeat in TAL Effectors Revealed by a Molecular Simulation Study

    Science.gov (United States)

    Wan, Hua; Chang, Shan; Hu, Jian-ping; Tian, Xu-hong

    2016-01-01

    TAL effectors (TALEs) contain a modular DNA-binding domain that is composed of tandem repeats. In all naturally occurring TALEs, the end of tandem repeats is invariantly a truncated half repeat. To investigate the potential role of the last half repeat in TALEs, we performed comparative molecular dynamics simulations for the crystal structure of DNA-bound TALE AvrBs3 lacking the last half repeat and its modeled structure having the last half repeat. The structural stability analysis indicates that the modeled system is more stable than the nonmodeled system. Based on the principle component analysis, it is found that the AvrBs3 increases its structural compactness in the presence of the last half repeat. The comparison of DNA groove parameters of the two systems implies that the last half repeat also causes the change of DNA major groove binding efficiency. The following calculation of hydrogen bond reveals that, by stabilizing the phosphate binding with DNA at the C-terminus, the last half repeat helps to adopt a compact conformation at the protein-DNA interface. It further mediates more contacts between TAL repeats and DNA nucleotide bases. Finally, we suggest that the last half repeat is required for the high-efficient recognition of DNA by TALE. PMID:27803930

  16. Simulation modeling for the health care manager.

    Science.gov (United States)

    Kennedy, Michael H

    2009-01-01

    This article addresses the use of simulation software to solve administrative problems faced by health care managers. Spreadsheet add-ins, process simulation software, and discrete event simulation software are available at a range of costs and complexity. All use the Monte Carlo method to realistically integrate probability distributions into models of the health care environment. Problems typically addressed by health care simulation modeling are facility planning, resource allocation, staffing, patient flow and wait time, routing and transportation, supply chain management, and process improvement.

  17. Warehouse Simulation Through Model Configuration

    NARCIS (Netherlands)

    Verriet, J.H.; Hamberg, R.; Caarls, J.; Wijngaarden, B. van

    2013-01-01

    The pre-build development of warehouse systems leads from a specific customer request to a specific customer quotation. This involves a process of configuring a warehouse system using a sequence of steps that contain increasingly more details. Simulation is a helpful tool in analyzing warehouse desi

  18. Modeling and Simulation of Matrix Converter

    DEFF Research Database (Denmark)

    Liu, Fu-rong; Klumpner, Christian; Blaabjerg, Frede

    2005-01-01

    This paper discusses the modeling and simulation of matrix converter. Two models of matrix converter are presented: one is based on indirect space vector modulation and the other is based on power balance equation. The basis of these two models is• given and the process on modeling is introduced...

  19. Vestibular models for design and evaluation of flight simulator motion

    Science.gov (United States)

    Bussolari, S. R.; Sullivan, R. B.; Young, L. R.

    1986-01-01

    The use of spatial orientation models in the design and evaluation of control systems for motion-base flight simulators is investigated experimentally. The development of a high-fidelity motion drive controller using an optimal control approach based on human vestibular models is described. The formulation and implementation of the optimal washout system are discussed. The effectiveness of the motion washout system was evaluated by studying the response of six motion washout systems to the NASA/AMES Vertical Motion Simulator for a single dash-quick-stop maneuver. The effects of the motion washout system on pilot performance and simulator acceptability are examined. The data reveal that human spatial orientation models are useful for the design and evaluation of flight simulator motion fidelity.

  20. Quantum simulation of the t- J model

    Science.gov (United States)

    Yamaguchi, Fumiko; Yamamoto, Yoshihisa

    2002-12-01

    Computer simulation of a many-particle quantum system is bound to reach the inevitable limits of its ability as the system size increases. The primary reason for this is that the memory size used in a classical simulator grows polynomially whereas the Hilbert space of the quantum system does so exponentially. Replacing the classical simulator by a quantum simulator would be an effective method of surmounting this obstacle. The prevailing techniques for simulating quantum systems on a quantum computer have been developed for purposes of computing numerical algorithms designed to obtain approximate physical quantities of interest. The method suggested here requires no numerical algorithms; it is a direct isomorphic translation between a quantum simulator and the quantum system to be simulated. In the quantum simulator, physical parameters of the system, which are the fixed parameters of the simulated quantum system, are under the control of the experimenter. A method of simulating a model for high-temperature superconducting oxides, the t- J model, by optical control, as an example of such a quantum simulation, is presented.

  1. CAUSA - An Environment For Modeling And Simulation

    Science.gov (United States)

    Dilger, Werner; Moeller, Juergen

    1989-03-01

    CAUSA is an environment for modeling and simulation of dynamic systems on a quantitative level. The environment provides a conceptual framework including primitives like objects, processes and causal dependencies which allow the modeling of a broad class of complex systems. The facility of simulation allows the quantitative and qualitative inspection and empirical investigation of the behavior of the modeled system. CAUSA is implemented in Knowledge-Craft and runs on a Symbolics 3640.

  2. Simulation-based Manufacturing System Modeling

    Institute of Scientific and Technical Information of China (English)

    卫东; 金烨; 范秀敏; 严隽琪

    2003-01-01

    In recent years, computer simulation appears to be very advantageous technique for researching the resource-constrained manufacturing system. This paper presents an object-oriented simulation modeling method, which combines the merits of traditional methods such as IDEF0 and Petri Net. In this paper, a four-layer-one-angel hierarchical modeling framework based on OOP is defined. And the modeling description of these layers is expounded, such as: hybrid production control modeling and human resource dispatch modeling. To validate the modeling method, a case study of an auto-product line in a motor manufacturing company has been carried out.

  3. Multiscale Model Approach for Magnetization Dynamics Simulations

    CERN Document Server

    De Lucia, Andrea; Tretiakov, Oleg A; Kläui, Mathias

    2016-01-01

    Simulations of magnetization dynamics in a multiscale environment enable rapid evaluation of the Landau-Lifshitz-Gilbert equation in a mesoscopic sample with nanoscopic accuracy in areas where such accuracy is required. We have developed a multiscale magnetization dynamics simulation approach that can be applied to large systems with spin structures that vary locally on small length scales. To implement this, the conventional micromagnetic simulation framework has been expanded to include a multiscale solving routine. The software selectively simulates different regions of a ferromagnetic sample according to the spin structures located within in order to employ a suitable discretization and use either a micromagnetic or an atomistic model. To demonstrate the validity of the multiscale approach, we simulate the spin wave transmission across the regions simulated with the two different models and different discretizations. We find that the interface between the regions is fully transparent for spin waves with f...

  4. Systematic modelling and simulation of refrigeration systems

    DEFF Research Database (Denmark)

    Rasmussen, Bjarne D.; Jakobsen, Arne

    1998-01-01

    The task of developing a simulation model of a refrigeration system can be very difficult and time consuming. In order for this process to be effective, a systematic method for developing the system model is required. This method should aim at guiding the developer to clarify the purpose of the s......The task of developing a simulation model of a refrigeration system can be very difficult and time consuming. In order for this process to be effective, a systematic method for developing the system model is required. This method should aim at guiding the developer to clarify the purpose...... of the simulation, to select appropriate component models and to set up the equations in a well-arranged way. In this paper the outline of such a method is proposed and examples showing the use of this method for simulation of refrigeration systems are given....

  5. Software-Engineering Process Simulation (SEPS) model

    Science.gov (United States)

    Lin, C. Y.; Abdel-Hamid, T.; Sherif, J. S.

    1992-01-01

    The Software Engineering Process Simulation (SEPS) model is described which was developed at JPL. SEPS is a dynamic simulation model of the software project development process. It uses the feedback principles of system dynamics to simulate the dynamic interactions among various software life cycle development activities and management decision making processes. The model is designed to be a planning tool to examine tradeoffs of cost, schedule, and functionality, and to test the implications of different managerial policies on a project's outcome. Furthermore, SEPS will enable software managers to gain a better understanding of the dynamics of software project development and perform postmodern assessments.

  6. Systematic modelling and simulation of refrigeration systems

    DEFF Research Database (Denmark)

    Rasmussen, Bjarne D.; Jakobsen, Arne

    1998-01-01

    The task of developing a simulation model of a refrigeration system can be very difficult and time consuming. In order for this process to be effective, a systematic method for developing the system model is required. This method should aim at guiding the developer to clarify the purpose...... of the simulation, to select appropriate component models and to set up the equations in a well-arranged way. In this paper the outline of such a method is proposed and examples showing the use of this method for simulation of refrigeration systems are given....

  7. HVDC System Characteristics and Simulation Models

    Energy Technology Data Exchange (ETDEWEB)

    Moon, S.I.; Han, B.M.; Jang, G.S. [Electric Enginnering and Science Research Institute, Seoul (Korea)

    2001-07-01

    This report deals with the AC-DC power system simulation method by PSS/E and EUROSTAG for the development of a strategy for the reliable operation of the Cheju-Haenam interconnected system. The simulation using both programs is performed to analyze HVDC simulation models. In addition, the control characteristics of the Cheju-Haenam HVDC system as well as Cheju AC system characteristics are described in this work. (author). 104 figs., 8 tabs.

  8. Simulation modeling and analysis with Arena

    Energy Technology Data Exchange (ETDEWEB)

    Tayfur Altiok; Benjamin Melamed [Rutgers University, NJ (United States). Department of Industrial and Systems Engineering

    2007-06-15

    The textbook which treats the essentials of the Monte Carlo discrete-event simulation methodology, and does so in the context of a popular Arena simulation environment. It treats simulation modeling as an in-vitro laboratory that facilitates the understanding of complex systems and experimentation with what-if scenarios in order to estimate their performance metrics. The book contains chapters on the simulation modeling methodology and the underpinnings of discrete-event systems, as well as the relevant underlying probability, statistics, stochastic processes, input analysis, model validation and output analysis. All simulation-related concepts are illustrated in numerous Arena examples, encompassing production lines, manufacturing and inventory systems, transportation systems, and computer information systems in networked settings. Chapter 13.3.3 is on coal loading operations on barges/tugboats.

  9. Modeling and simulation of axisymmetric stagnation flames

    Science.gov (United States)

    Sone, Kazuo

    Laminar flame modeling is an important element in turbulent combustion research. The accuracy of a turbulent combustion model is highly dependent upon our understanding of laminar flames and their behavior in many situations. How much we understand combustion can only be measured by how well the model describes and predicts combustion phenomena. One of the most commonly used methane combustion models is GRI-Mech 3.0. However, how well the model describes the reacting flow phenomena is still uncertain even after many attempts to validate the model or quantify uncertainties. In the present study, the behavior of laminar flames under different aerodynamic and thermodynamic conditions is studied numerically in a stagnation-flow configuration. In order to make such a numerical study possible, the spectral element method is reformulated to accommodate the large density variations in methane reacting flows. In addition, a new axisymmetric basis function set for the spectral element method that satisfies the correct behavior near the axis is developed, and efficient integration techniques are developed to accurately model axisymmetric reacting flow within a reasonable amount of computational time. The numerical method is implemented using an object-oriented programming technique, and the resulting computer program is verified with several different verification methods. The present study then shows variances with the commonly used GRI-Mech 3.0 chemical kinetics model through a direct simulation of laboratory flames that allows direct comparison to experimental data. It is shown that the methane combustion model based on GRI-Mech 3.0 works well for methane-air mixtures near stoichiometry. However, GRI-Mech 3.0 leads to an overprediction of laminar flame speed for lean mixtures and an underprediction for rich mixtures. This result is slightly different from conclusion drawn in previous work, in which experimental data are compared with a one-dimensional numerical solutions

  10. Object Oriented Modelling and Dynamical Simulation

    DEFF Research Database (Denmark)

    Wagner, Falko Jens; Poulsen, Mikael Zebbelin

    1998-01-01

    This report with appendix describes the work done in master project at DTU.The goal of the project was to develop a concept for simulation of dynamical systems based on object oriented methods.The result was a library of C++-classes, for use when both building componentbased models and when...... onduction simulation experiments....

  11. Modeling and simulation for RF system design

    CERN Document Server

    Frevert, Ronny; Jancke, Roland; Knöchel, Uwe; Schwarz, Peter; Kakerow, Ralf; Darianian, Mohsen

    2005-01-01

    Focusing on RF specific modeling and simulation methods, and system and circuit level descriptions, this work contains application-oriented training material. Accompanied by a CD- ROM, it combines the presentation of a mixed-signal design flow, an introduction into VHDL-AMS and Verilog-A, and the application of commercially available simulators.

  12. Modeling and simulation of complex systems a framework for efficient agent-based modeling and simulation

    CERN Document Server

    Siegfried, Robert

    2014-01-01

    Robert Siegfried presents a framework for efficient agent-based modeling and simulation of complex systems. He compares different approaches for describing structure and dynamics of agent-based models in detail. Based on this evaluation the author introduces the "General Reference Model for Agent-based Modeling and Simulation" (GRAMS). Furthermore he presents parallel and distributed simulation approaches for execution of agent-based models -from small scale to very large scale. The author shows how agent-based models may be executed by different simulation engines that utilize underlying hard

  13. Simulations reveal the role of composition into the atomic-level flexibility of bioactive glass cements.

    Science.gov (United States)

    Tian, Kun Viviana; Chass, Gregory A; Di Tommaso, Devis

    2016-01-14

    Bioactive glass ionomer cements (GICs), the reaction product of a fluoro-alumino-silicate glass and polyacrylic acid, have been in effective use in dentistry for over 40 years and more recently in orthopaedics and medical implantation. Their desirable properties have affirmed GIC's place in the medical materials community, yet are limited to non-load bearing applications due to the brittle nature of the hardened composite cement, thought to arise from the glass component and the interfaces it forms. Towards helping resolve the fundamental bases of the mechanical shortcomings of GICs, we report the 1st ever computational models of a GIC-relevant component. Ab initio molecular dynamics simulations were employed to generate and characterise three fluoro-alumino-silicate glasses of differing compositions with focus on resolving the atomic scale structural and dynamic contributions of aluminium, phosphorous and fluorine. Analyses of the glasses revealed rising F-content leading to the expansion of the glass network, compression of Al-F bonding, angular constraint at Al-pivots, localisation of alumino-phosphates and increased fluorine diffusion. Together, these changes to the structure, speciation and dynamics with raised fluorine content impart an overall rigidifying effect on the glass network, and suggest a predisposition to atomic-level inflexibility, which could manifest in the ionomer cements they form.

  14. A sand wave simulation model

    NARCIS (Netherlands)

    Nemeth, A.A.; Hulscher, S.J.M.H.; Damme, van R.M.J.

    2003-01-01

    Sand waves form a prominent regular pattern in the offshore seabeds of sandy shallow seas. A two dimensional vertical (2DV) flow and morphological numerical model describing the behaviour of these sand waves has been developed. The model contains the 2DV shallow water equations, with a free water su

  15. Modelling Reactive and Proactive Behaviour in Simulation

    CERN Document Server

    Majid, Mazlina Abdul; Aickelin, Uwe

    2010-01-01

    This research investigated the simulation model behaviour of a traditional and combined discrete event as well as agent based simulation models when modelling human reactive and proactive behaviour in human centric complex systems. A departmental store was chosen as human centric complex case study where the operation system of a fitting room in WomensWear department was investigated. We have looked at ways to determine the efficiency of new management policies for the fitting room operation through simulating the reactive and proactive behaviour of staff towards customers. Once development of the simulation models and their verification had been done, we carried out a validation experiment in the form of a sensitivity analysis. Subsequently, we executed a statistical analysis where the mixed reactive and proactive behaviour experimental results were compared with some reactive experimental results from previously published works. Generally, this case study discovered that simple proactive individual behaviou...

  16. Challenges in SysML Model Simulation

    Directory of Open Access Journals (Sweden)

    Mara Nikolaidou

    2016-07-01

    Full Text Available Systems Modeling Language (SysML is a standard proposed by the OMG for systems-of-systems (SoS modeling and engineering. To this end, it provides the means to depict SoS components and their behavior in a hierarchical, multi-layer fashion, facilitating alternative engineering activities, such as system design. To explore the performance of SysML, simulation is one of the preferred methods. There are many efforts targeting simulation code generation from SysML models. Numerous simulation methodologies and tools are employed, while different SysML diagrams are utilized. Nevertheless, this process is not standardized, although most of current approaches tend to follow the same steps, even if they employ different tools. The scope of this paper is to provide a comprehensive understanding of the similarities and differences of existing approaches and identify current challenges in fully automating SysML models simulation process.

  17. SIMULATION MODELING SLOW SPATIALLY HETER- OGENEOUS COAGULATION

    Directory of Open Access Journals (Sweden)

    P. A. Zdorovtsev

    2013-01-01

    Full Text Available A new model of spatially inhomogeneous coagulation, i.e. formation of larger clusters by joint interaction of smaller ones, is under study. The results of simulation are compared with known analytical and numerical solutions.

  18. Theory, modeling, and simulation annual report, 1992

    Energy Technology Data Exchange (ETDEWEB)

    1993-05-01

    This report briefly discusses research on the following topics: development of electronic structure methods; modeling molecular processes in clusters; modeling molecular processes in solution; modeling molecular processes in separations chemistry; modeling interfacial molecular processes; modeling molecular processes in the atmosphere; methods for periodic calculations on solids; chemistry and physics of minerals; graphical user interfaces for computational chemistry codes; visualization and analysis of molecular simulations; integrated computational chemistry environment; and benchmark computations.

  19. Application of Chebyshev Polynomial to simulated modeling

    Institute of Scientific and Technical Information of China (English)

    CHI Hai-hong; LI Dian-pu

    2006-01-01

    Chebyshev polynomial is widely used in many fields, and used usually as function approximation in numerical calculation. In this paper, Chebyshev polynomial expression of the propeller properties across four quadrants is given at first, then the expression of Chebyshev polynomial is transformed to ordinary polynomial for the need of simulation of propeller dynamics. On the basis of it,the dynamical models of propeller across four quadrants are given. The simulation results show the efficiency of mathematical model.

  20. Collisionless Electrostatic Shock Modeling and Simulation

    Science.gov (United States)

    2016-10-21

    Briefing Charts 3. DATES COVERED (From - To) 30 September 2016 – 21 October 2016 4. TITLE AND SUBTITLE Collisionless Electrostatic Shock Modeling and...release: distribution unlimited. PA#16490 Air Force Research Laboratory Collisionless Electrostatic Shock Modeling and Simulation Daniel W. Crews In-Space...unlimited. PA#16490 Overview • Motivation and Background • What is a Collisionless Shock Wave? • Features of the Collisionless Shock • The Shock Simulation

  1. Modeling of magnetic particle suspensions for simulations

    CERN Document Server

    Satoh, Akira

    2017-01-01

    The main objective of the book is to highlight the modeling of magnetic particles with different shapes and magnetic properties, to provide graduate students and young researchers information on the theoretical aspects and actual techniques for the treatment of magnetic particles in particle-based simulations. In simulation, we focus on the Monte Carlo, molecular dynamics, Brownian dynamics, lattice Boltzmann and stochastic rotation dynamics (multi-particle collision dynamics) methods. The latter two simulation methods can simulate both the particle motion and the ambient flow field simultaneously. In general, specialized knowledge can only be obtained in an effective manner under the supervision of an expert. The present book is written to play such a role for readers who wish to develop the skill of modeling magnetic particles and develop a computer simulation program using their own ability. This book is therefore a self-learning book for graduate students and young researchers. Armed with this knowledge,...

  2. Modelling and Simulation of Wave Loads

    DEFF Research Database (Denmark)

    Sørensen, John Dalsgaard; Thoft-Christensen, Palle

    A simple model of the wave load on slender members of offshore structures is described. The wave elevation of the sea state is modelled by a stationary Gaussian process. A new procedure to simulate realizations of the wave loads is developed. The simulation method assumes that the wave particle...... velocity can be approximated by a Gaussian Markov process. Known approximate results for the first-passage density or equivalently, the distribution of the extremes of wave loads are presented and compared with rather precise simulation results. It is demonstrated that the approximate results...

  3. Modelling and Simulation of Wave Loads

    DEFF Research Database (Denmark)

    Sørensen, John Dalsgaard; Thoft-Christensen, Palle

    1985-01-01

    A simple model of the wave load on stender members of offshore structures is described . The wave elevation of the sea stateis modelled by a stationary Gaussian process. A new procedure to simulate realizations of the wave loads is developed. The simulation method assumes that the wave particle...... velocity can be approximated by a Gaussian Markov process. Known approximate results for the first passage density or equivalently, the distribution of the extremes of wave loads are presented and compared with rather precise simulation results. It is demonstrated that the approximate results...

  4. Modeling and simulation of multiport RF switch

    Energy Technology Data Exchange (ETDEWEB)

    Vijay, J [Student, Department of Instrumentation and Control Engineering, National Institute of Technology, Tiruchirappalli-620015 (India); Saha, Ivan [Scientist, Indian Space Research Organisation (ISRO) (India); Uma, G [Lecturer, Department of Instrumentation and Control Engineering, National Institute of Technology, Tiruchirappalli-620015 (India); Umapathy, M [Assistant Professor, Department of Instrumentation and Control Engineering, National Institute of Technology, Tiruchirappalli-620015 (India)

    2006-04-01

    This paper describes the modeling and simulation of 'Multi Port RF Switch' where the latching mechanism is realized with two hot arm electro thermal actuators and the switching action is realized with electrostatic actuators. It can act as single pole single thrown as well as single pole multi thrown switch. The proposed structure is modeled analytically and required parameters are simulated using MATLAB. The analytical simulation results are validated using Finite Element Analysis of the same in the COVENTORWARE software.

  5. Modeling and simulation of discrete event systems

    CERN Document Server

    Choi, Byoung Kyu

    2013-01-01

    Computer modeling and simulation (M&S) allows engineers to study and analyze complex systems. Discrete-event system (DES)-M&S is used in modern management, industrial engineering, computer science, and the military. As computer speeds and memory capacity increase, so DES-M&S tools become more powerful and more widely used in solving real-life problems. Based on over 20 years of evolution within a classroom environment, as well as on decades-long experience in developing simulation-based solutions for high-tech industries, Modeling and Simulation of Discrete-Event Systems is the only book on

  6. Traffic Modeling in WCDMA System Level Simulations

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Traffic modeling is a crucial element in WCDMA system level simulations. A clear understanding of the nature of traffic in the WCDMA system and subsequent selection of an appropriate random traffic model are critical to the success of the modeling enterprise. The resultant performances will evidently be of a function that our design has been well adapted to the traffic, channel and user mobility models, and these models are also accurate. In this article, our attention will be focused on modeling voice and WWW data traffic with the SBBP model and Victor model respectively.

  7. Modeling and simulation of luminescence detection platforms.

    Science.gov (United States)

    Salama, Khaled; Eltoukhy, Helmy; Hassibi, Arjang; El-Gamal, Abbas

    2004-06-15

    Motivated by the design of an integrated CMOS-based detection platform, a simulation model for CCD and CMOS imager-based luminescence detection systems is developed. The model comprises four parts. The first portion models the process of photon flux generation from luminescence probes using ATP-based and luciferase label-based assay kinetics. An optics simulator is then used to compute the incident photon flux on the imaging plane for a given photon flux and system geometry. Subsequently, the output image is computed using a detailed imaging sensor model that accounts for photodetector spectral response, dark current, conversion gain, and various noise sources. Finally, signal processing algorithms are applied to the image to enhance detection reliability and hence increase the overall system throughput. To validate the model, simulation results are compared to experimental results obtained from a CCD-based system that was built to emulate the integrated CMOS-based platform.

  8. SOFT MODELLING AND SIMULATION IN STRATEGY

    Directory of Open Access Journals (Sweden)

    Luciano Rossoni

    2006-06-01

    Full Text Available A certain resistance on the part of the responsible controllers for the strategy exists, in using techniques and tools of modeling and simulation. Many find them excessively complicated, already others see them as rigid and mathematical for excessively for the use of strategies in uncertain and turbulent environments. However, some interpretative boarding that take care of, in part exist, the necessities of these borrowers of decision. The objective of this work is to demonstrate of a clear and simple form, some of the most powerful boarding, methodologies and interpretative tools (soft of modeling and simulation in the business-oriented area of strategy. We will define initially, what they are on models, simulation and some aspects to the modeling and simulation in the strategy area. Later we will see some boarding of modeling soft, that they see the modeling process much more of that simply a mechanical process, therefore, as seen for Simon, the human beings rationally are limited and its decisions are influenced by a series of questions of subjective character, related to the way where it is inserted. Keywords: strategy, modeling and simulation, soft systems methodology, cognitive map, systems dynamics.

  9. Modeling and Simulation of Hydraulic Engine Mounts

    Institute of Scientific and Technical Information of China (English)

    DUAN Shanzhong; Marshall McNea

    2012-01-01

    Hydraulic engine mounts are widely used in automotive powertrains for vibration isolation.A lumped mechanical parameter model is a traditional approach to model and simulate such mounts.This paper presents a dynamical model of a passive hydraulic engine mount with a double-chamber,an inertia track,a decoupler,and a plunger.The model is developed based on analogy between electrical systems and mechanical-hydraulic systems.The model is established to capture both low and high frequency dynatmic behaviors of the hydraulic mount.The model will be further used to find the approximate pulse responses of the mounts in terms of the force transmission and top chamber pressure.The close form solution from the simplifiod linear model may provide some insight into the highly nonlinear behavior of the mounts.Based on the model,computer simulation has been carried out to study dynamic performance of the hydraulic mount.

  10. Modelling and simulating fire tube boiler performance

    DEFF Research Database (Denmark)

    Sørensen, K.; Condra, T.; Houbak, Niels;

    2003-01-01

    A model for a flue gas boiler covering the flue gas and the water-/steam side has been formulated. The model has been formulated as a number of sub models that are merged into an overall model for the complete boiler. Sub models have been defined for the furnace, the convection zone (split in 2......: a zone submerged in water and a zone covered by steam), a model for the material in the boiler (the steel) and 2 models for resp. the water/steam zone (the boiling) and the steam. The dynamic model has been developed as a number of Differential-Algebraic-Equation system (DAE). Subsequently Mat......Lab/Simulink has been applied for carrying out the simulations. To be able to verify the simulated results experiments has been carried out on a full scale boiler plant....

  11. Modelling and simulating fire tube boiler performance

    DEFF Research Database (Denmark)

    Sørensen, Kim; Karstensen, Claus; Condra, Thomas Joseph;

    2003-01-01

    A model for a ue gas boiler covering the ue gas and the water-/steam side has been formulated. The model has been formulated as a number of sub models that are merged into an overall model for the complete boiler. Sub models have been dened for the furnace, the convection zone (split in 2: a zone...... submerged in water and a zone covered by steam), a model for the material in the boiler (the steel) and 2 models for resp. the water/steam zone (the boiling) and the steam. The dynamic model has been developed as a number of Differential-Algebraic- Equation system (DAE). Subsequently MatLab/Simulink has...... been applied for carrying out the simulations. To be able to verify the simulated results an experiments has been carried out on a full scale boiler plant....

  12. Computer simulations of the random barrier model

    DEFF Research Database (Denmark)

    Schrøder, Thomas; Dyre, Jeppe

    2002-01-01

    A brief review of experimental facts regarding ac electronic and ionic conduction in disordered solids is given followed by a discussion of what is perhaps the simplest realistic model, the random barrier model (symmetric hopping model). Results from large scale computer simulations are presented......, focusing on universality of the ac response in the extreme disorder limit. Finally, some important unsolved problems relating to hopping models for ac conduction are listed....

  13. Modeling and simulating of unloading welding transformer

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    The simulation model of an unloading welding transformer was established on the basis of MATLAB software, and the modeling principle was described in detail in the paper. The model was made up of three sub-models, i.e. the linear inductor sub-model, the non-linear inductor sub-model and series connection sub-model controlled by current, and these sub-models were jointed together by means of segmented linearization. The simulating results showed that, in the conditions of the high convert frequency and the large cross section of the magnet core of a welding transformer, the non-linear inductor sub-model can be substituted by a linear inductor sub-model in the model; and the leakage reactance in the welding transformer is one of the main reasons of producing over-current and over-voltage in the inverter. The simulation results demonstrate that the over-voltage produced by leakage reactance is nearly two times of the input voltage supplied to the transformer, and the lasting time of over-voltage depends on time constant τ1. With reducing of τ1, the amplitude of the over-current will increase, and the lasting time becomes shorter. Contrarily, with increasing of τ1, the amplitude of the over-current will decrease, and the lasting time becomes longer. The model has played the important role for the development of the inverter resistance welding machine.

  14. Revolutions in energy through modeling and simulation

    Energy Technology Data Exchange (ETDEWEB)

    Tatro, M.; Woodard, J.

    1998-08-01

    The development and application of energy technologies for all aspects from generation to storage have improved dramatically with the advent of advanced computational tools, particularly modeling and simulation. Modeling and simulation are not new to energy technology development, and have been used extensively ever since the first commercial computers were available. However, recent advances in computing power and access have broadened the extent and use, and, through increased fidelity (i.e., accuracy) of the models due to greatly enhanced computing power, the increased reliance on modeling and simulation has shifted the balance point between modeling and experimentation. The complex nature of energy technologies has motivated researchers to use these tools to understand better performance, reliability and cost issues related to energy. The tools originated in sciences such as the strength of materials (nuclear reactor containment vessels); physics, heat transfer and fluid flow (oil production); chemistry, physics, and electronics (photovoltaics); and geosciences and fluid flow (oil exploration and reservoir storage). Other tools include mathematics, such as statistics, for assessing project risks. This paper describes a few advancements made possible by these tools and explores the benefits and costs of their use, particularly as they relate to the acceleration of energy technology development. The computational complexity ranges from basic spreadsheets to complex numerical simulations using hardware ranging from personal computers (PCs) to Cray computers. In all cases, the benefits of using modeling and simulation relate to lower risks, accelerated technology development, or lower cost projects.

  15. Inventory Reduction Using Business Process Reengineering and Simulation Modeling.

    Science.gov (United States)

    1996-12-01

    center is analyzed using simulation modeling and business process reengineering (BPR) concepts. The two simulation models were designed and evaluated by...reengineering and simulation modeling offer powerful tools to aid the manager in reducing cycle time and inventory levels.

  16. Simulation and modeling of turbulent flows

    CERN Document Server

    Gatski, Thomas B; Lumley, John L

    1996-01-01

    This book provides students and researchers in fluid engineering with an up-to-date overview of turbulent flow research in the areas of simulation and modeling. A key element of the book is the systematic, rational development of turbulence closure models and related aspects of modern turbulent flow theory and prediction. Starting with a review of the spectral dynamics of homogenous and inhomogeneous turbulent flows, succeeding chapters deal with numerical simulation techniques, renormalization group methods and turbulent closure modeling. Each chapter is authored by recognized leaders in their respective fields, and each provides a thorough and cohesive treatment of the subject.

  17. Modeling & Simulation Executive Agent Panel

    Science.gov (United States)

    2007-11-02

    Richard W. ; 5d. PROJECT NUMBER 5e. TASK NUMBER 5f. WORK UNIT NUMBER 7. PERFORMING ORGANIZATION NAME AND ADDRESS Office of the Oceanographer of the Navy...acquisition, and training communities.” MSEA Role • Facilitator in the project startup phase • Catalyst during development • Certifier in the...ACOUSTIC MODELS Parabolic Equation 5.0 ASTRAL 5.0 ASPM 4.3 Gaussian Ray Bundle 1.0 High Freq Env Acoustic (HFEVA) 1.0 COLOSSUS II 1.0 Low Freq Bottom LOSS

  18. MODELLING, SIMULATING AND OPTIMIZING BOILERS

    DEFF Research Database (Denmark)

    Sørensen, K.; Condra, T.; Houbak, Niels

    2003-01-01

    , and the total stress level (i.e. stresses introduced due to internal pressure plus stresses introduced due to temperature gradients) must always be kept below the allowable stress level. In this way, the increased water-/steam space that should allow for better dynamic performance, in the end causes limited...... freedom with respect to dynamic operation of the plant. By means of an objective function including as well the price of the plant as a quantification of the value of dynamic operation of the plant an optimization is carried out. The dynamic model of the boiler plant is applied to define parts...

  19. Modelling, simulating and optimizing Boilers

    DEFF Research Database (Denmark)

    Sørensen, Kim; Condra, Thomas Joseph; Houbak, Niels

    2003-01-01

    , and the total stress level (i.e. stresses introduced due to internal pressure plus stresses introduced due to temperature gradients) must always be kept below the allowable stress level. In this way, the increased water-/steam space that should allow for better dynamic performance, in the end causes limited...... freedom with respect to dynamic operation of the plant. By means of an objective function including as well the price of the plant as a quantication of the value of dynamic operation of the plant an optimization is carried out. The dynamic model of the boiler plant is applied to dene parts...

  20. Simulering af dagslys i digitale modeller

    DEFF Research Database (Denmark)

    Villaume, René Domine; Ørstrup, Finn Rude

    2004-01-01

    Projektet undersøger via forskellige simuleringer af dagslys, kvaliteten af visualiseringer af komplekse lysforhold i digitale modeller i forbindelse med formidling af arkitektur via nettet. I en digital 3D model af Utzon Associates Paustians hus, simulers naturligt dagslysindfald med  forskellig...... Renderingsmetoder som: "shaded render" /  ”raytraceing” /  "Final Gather /  ”Global Illumination”...

  1. Validity of microgravity simulation models on earth

    DEFF Research Database (Denmark)

    Regnard, J; Heer, M; Drummer, C

    2001-01-01

    Many studies have used water immersion and head-down bed rest as experimental models to simulate responses to microgravity. However, some data collected during space missions are at variance or in contrast with observations collected from experimental models. These discrepancies could reflect inc...

  2. Molecular simulation and modeling of complex I.

    Science.gov (United States)

    Hummer, Gerhard; Wikström, Mårten

    2016-07-01

    Molecular modeling and molecular dynamics simulations play an important role in the functional characterization of complex I. With its large size and complicated function, linking quinone reduction to proton pumping across a membrane, complex I poses unique modeling challenges. Nonetheless, simulations have already helped in the identification of possible proton transfer pathways. Simulations have also shed light on the coupling between electron and proton transfer, thus pointing the way in the search for the mechanistic principles underlying the proton pump. In addition to reviewing what has already been achieved in complex I modeling, we aim here to identify pressing issues and to provide guidance for future research to harness the power of modeling in the functional characterization of complex I. This article is part of a Special Issue entitled Respiratory complex I, edited by Volker Zickermann and Ulrich Brandt. Copyright © 2016 Elsevier B.V. All rights reserved.

  3. Hybrid simulation models of production networks

    CERN Document Server

    Kouikoglou, Vassilis S

    2001-01-01

    This book is concerned with a most important area of industrial production, that of analysis and optimization of production lines and networks using discrete-event models and simulation. The book introduces a novel approach that combines analytic models and discrete-event simulation. Unlike conventional piece-by-piece simulation, this method observes a reduced number of events between which the evolution of the system is tracked analytically. Using this hybrid approach, several models are developed for the analysis of production lines and networks. The hybrid approach combines speed and accuracy for exceptional analysis of most practical situations. A number of optimization problems, involving buffer design, workforce planning, and production control, are solved through the use of hybrid models.

  4. Investigating Output Accuracy for a Discrete Event Simulation Model and an Agent Based Simulation Model

    CERN Document Server

    Majid, Mazlina Abdul; Siebers, Peer-Olaf

    2010-01-01

    In this paper, we investigate output accuracy for a Discrete Event Simulation (DES) model and Agent Based Simulation (ABS) model. The purpose of this investigation is to find out which of these simulation techniques is the best one for modelling human reactive behaviour in the retail sector. In order to study the output accuracy in both models, we have carried out a validation experiment in which we compared the results from our simulation models to the performance of a real system. Our experiment was carried out using a large UK department store as a case study. We had to determine an efficient implementation of management policy in the store's fitting room using DES and ABS. Overall, we have found that both simulation models were a good representation of the real system when modelling human reactive behaviour.

  5. Unbiased simulations reveal the inward-facing conformation of the human serotonin transporter and Na(+ ion release.

    Directory of Open Access Journals (Sweden)

    Heidi Koldsø

    2011-10-01

    Full Text Available Monoamine transporters are responsible for termination of synaptic signaling and are involved in depression, control of appetite, and anxiety amongst other neurological processes. Despite extensive efforts, the structures of the monoamine transporters and the transport mechanism of ions and substrates are still largely unknown. Structural knowledge of the human serotonin transporter (hSERT is much awaited for understanding the mechanistic details of substrate translocation and binding of antidepressants and drugs of abuse. The publication of the crystal structure of the homologous leucine transporter has resulted in homology models of the monoamine transporters. Here we present extended molecular dynamics simulations of an experimentally supported homology model of hSERT with and without the natural substrate yielding a total of more than 1.5 µs of simulation of the protein dimer. The simulations reveal a transition of hSERT from an outward-facing occluded conformation to an inward-facing conformation in a one-substrate-bound state. Simulations with a second substrate in the proposed symport effector site did not lead to conformational changes associated with translocation. The central substrate binding site becomes fully exposed to the cytoplasm leaving both the Na(+-ion in the Na2-site and the substrate in direct contact with the cytoplasm through water interactions. The simulations reveal how sodium is released and show indications of early events of substrate transport. The notion that ion dissociation from the Na2-site drives translocation is supported by experimental studies of a Na2-site mutant. Transmembrane helices (TMs 1 and 6 are identified as the helices involved in the largest movements during transport.

  6. Power electronics system modeling and simulation

    Energy Technology Data Exchange (ETDEWEB)

    Lai, Jih-Sheng

    1994-12-31

    This paper introduces control system design based softwares, SIMNON and MATLAB/SIMULINK, for power electronics system simulation. A complete power electronics system typically consists of a rectifier bridge along with its smoothing capacitor, an inverter, and a motor. The system components, featuring discrete or continuous, linear or nonlinear, are modeled in mathematical equations. Inverter control methods,such as pulse-width-modulation and hysteresis current control, are expressed in either computer algorithms or digital circuits. After describing component models and control methods, computer programs are then developed for complete systems simulation. Simulation results are mainly used for studying system performances, such as input and output current harmonics, torque ripples, and speed responses. Key computer programs and simulation results are demonstrated for educational purposes.

  7. Simulation of Gravity Currents Using VOF Model

    Institute of Scientific and Technical Information of China (English)

    邹建锋; 黄钰期; 应新亚; 任安禄

    2002-01-01

    By the Volume of Fluid (VOF) multiphase flow model two-dimensional gravity currents with three phases including air are numerically simulated in this article. The necessity of consideration of turbulence effect for high Reynolds numbers is demonstrated quantitatively by LES (the Large Eddy Simulation) turbulence model. The gravity currents are simulated for h ≠ H as well as h = H, where h is the depth of the gravity current before the release and H is the depth of the intruded fluid. Uprising of swell occurs when a current flows horizontally into another lighter one for h ≠ H. The problems under what condition the uprising of swell occurs and how long it takes are considered in this article. All the simulated results are in reasonable agreement with the experimental results available.

  8. Development of NASA's Models and Simulations Standard

    Science.gov (United States)

    Bertch, William J.; Zang, Thomas A.; Steele, Martin J.

    2008-01-01

    From the Space Shuttle Columbia Accident Investigation, there were several NASA-wide actions that were initiated. One of these actions was to develop a standard for development, documentation, and operation of Models and Simulations. Over the course of two-and-a-half years, a team of NASA engineers, representing nine of the ten NASA Centers developed a Models and Simulation Standard to address this action. The standard consists of two parts. The first is the traditional requirements section addressing programmatics, development, documentation, verification, validation, and the reporting of results from both the M&S analysis and the examination of compliance with this standard. The second part is a scale for evaluating the credibility of model and simulation results using levels of merit associated with 8 key factors. This paper provides an historical account of the challenges faced by and the processes used in this committee-based development effort. This account provides insights into how other agencies might approach similar developments. Furthermore, we discuss some specific applications of models and simulations used to assess the impact of this standard on future model and simulation activities.

  9. Simulation Modeling of Software Development Processes

    Science.gov (United States)

    Calavaro, G. F.; Basili, V. R.; Iazeolla, G.

    1996-01-01

    A simulation modeling approach is proposed for the prediction of software process productivity indices, such as cost and time-to-market, and the sensitivity analysis of such indices to changes in the organization parameters and user requirements. The approach uses a timed Petri Net and Object Oriented top-down model specification. Results demonstrate the model representativeness, and its usefulness in verifying process conformance to expectations, and in performing continuous process improvement and optimization.

  10. Incorporation of RAM techniques into simulation modeling

    Energy Technology Data Exchange (ETDEWEB)

    Nelson, S.C. Jr.; Haire, M.J.; Schryver, J.C.

    1995-07-01

    This work concludes that reliability, availability, and maintainability (RAM) analytical techniques can be incorporated into computer network simulation modeling to yield an important new analytical tool. This paper describes the incorporation of failure and repair information into network simulation to build a stochastic computer model represents the RAM Performance of two vehicles being developed for the US Army: The Advanced Field Artillery System (AFAS) and the Future Armored Resupply Vehicle (FARV). The AFAS is the US Army`s next generation self-propelled cannon artillery system. The FARV is a resupply vehicle for the AFAS. Both vehicles utilize automation technologies to improve the operational performance of the vehicles and reduce manpower. The network simulation model used in this work is task based. The model programmed in this application requirements a typical battle mission and the failures and repairs that occur during that battle. Each task that the FARV performs--upload, travel to the AFAS, refuel, perform tactical/survivability moves, return to logistic resupply, etc.--is modeled. Such a model reproduces a model reproduces operational phenomena (e.g., failures and repairs) that are likely to occur in actual performance. Simulation tasks are modeled as discrete chronological steps; after the completion of each task decisions are programmed that determine the next path to be followed. The result is a complex logic diagram or network. The network simulation model is developed within a hierarchy of vehicle systems, subsystems, and equipment and includes failure management subnetworks. RAM information and other performance measures are collected which have impact on design requirements. Design changes are evaluated through ``what if`` questions, sensitivity studies, and battle scenario changes.

  11. Developed hydraulic simulation model for water pipeline networks

    Directory of Open Access Journals (Sweden)

    A. Ayad

    2013-03-01

    Full Text Available A numerical method that uses linear graph theory is presented for both steady state, and extended period simulation in a pipe network including its hydraulic components (pumps, valves, junctions, etc.. The developed model is based on the Extended Linear Graph Theory (ELGT technique. This technique is modified to include new network components such as flow control valves and tanks. The technique also expanded for extended period simulation (EPS. A newly modified method for the calculation of updated flows improving the convergence rate is being introduced. Both benchmarks, ad Actual networks are analyzed to check the reliability of the proposed method. The results reveal the finer performance of the proposed method.

  12. Testing turbulent closure models with convection simulations

    CERN Document Server

    Snellman, J E; Mantere, M J; Rheinhardt, M; Dintrans, B

    2012-01-01

    Aims: To compare simple analytical closure models of turbulent Boussinesq convection for stellar applications with direct three-dimensional simulations both in homogeneous and inhomogeneous (bounded) setups. Methods: We use simple analytical closure models to compute the fluxes of angular momentum and heat as a function of rotation rate measured by the Taylor number. We also investigate cases with varying angles between the angular velocity and gravity vectors, corresponding to locating the computational domain at different latitudes ranging from the pole to the equator of the star. We perform three-dimensional numerical simulations in the same parameter regimes for comparison. The free parameters appearing in the closure models are calibrated by two fit methods using simulation data. Unique determination of the closure parameters is possible only in the non-rotating case and when the system is placed at the pole. In the other cases the fit procedures yield somewhat differing results. The quality of the closu...

  13. Analyzing Strategic Business Rules through Simulation Modeling

    Science.gov (United States)

    Orta, Elena; Ruiz, Mercedes; Toro, Miguel

    Service Oriented Architecture (SOA) holds promise for business agility since it allows business process to change to meet new customer demands or market needs without causing a cascade effect of changes in the underlying IT systems. Business rules are the instrument chosen to help business and IT to collaborate. In this paper, we propose the utilization of simulation models to model and simulate strategic business rules that are then disaggregated at different levels of an SOA architecture. Our proposal is aimed to help find a good configuration for strategic business objectives and IT parameters. The paper includes a case study where a simulation model is built to help business decision-making in a context where finding a good configuration for different business parameters and performance is too complex to analyze by trial and error.

  14. Model and simulation of Krause model in dynamic open network

    Science.gov (United States)

    Zhu, Meixia; Xie, Guangqiang

    2017-08-01

    The construction of the concept of evolution is an effective way to reveal the formation of group consensus. This study is based on the modeling paradigm of the HK model (Hegsekmann-Krause). This paper analyzes the evolution of multi - agent opinion in dynamic open networks with member mobility. The results of the simulation show that when the number of agents is constant, the interval distribution of the initial distribution will affect the number of the final view, The greater the distribution of opinions, the more the number of views formed eventually; The trust threshold has a decisive effect on the number of views, and there is a negative correlation between the trust threshold and the number of opinions clusters. The higher the connectivity of the initial activity group, the more easily the subjective opinion in the evolution of opinion to achieve rapid convergence. The more open the network is more conducive to the unity of view, increase and reduce the number of agents will not affect the consistency of the group effect, but not conducive to stability.

  15. Modeling and simulation with operator scaling

    CERN Document Server

    Cohen, Serge; Rosinski, Jan

    2009-01-01

    Self-similar processes are useful in modeling diverse phenomena that exhibit scaling properties. Operator scaling allows a different scale factor in each coordinate. This paper develops practical methods for modeling and simulating stochastic processes with operator scaling. A simulation method for operator stable Levy processes is developed, based on a series representation, along with a Gaussian approximation of the small jumps. Several examples are given to illustrate practical applications. A classification of operator stable Levy processes in two dimensions is provided according to their exponents and symmetry groups. We conclude with some remarks and extensions to general operator self-similar processes.

  16. Hemispherical sky simulator for daylighting model studies

    Energy Technology Data Exchange (ETDEWEB)

    Selkowitz, S.

    1981-07-01

    The design of a 24-foot-diameter hemispherical sky simulator recently completed at LBL is described. The goal was to produce a facility in which large models could be tested; which was suitable for research, teaching, and design; which could provide a uniform sky, an overcast sky, and several clear-sky luminance distributions, as well as accommodating an artificial sun. Initial operating experience with the facility is described, the sky simulator capabilities are reviewed, and its strengths and weaknesses relative to outdoor modeling tests are discussed.

  17. Wind Shear Target Echo Modeling and Simulation

    Directory of Open Access Journals (Sweden)

    Xiaoyang Liu

    2015-01-01

    Full Text Available Wind shear is a dangerous atmospheric phenomenon in aviation. Wind shear is defined as a sudden change of speed or direction of the wind. In order to analyze the influence of wind shear on the efficiency of the airplane, this paper proposes a mathematical model of point target rain echo and weather target signal echo based on Doppler effect. The wind field model is developed in this paper, and the antenna model is also studied by using Bessel function. The spectrum distribution of symmetric and asymmetric wind fields is researched by using the mathematical model proposed in this paper. The simulation results are in accordance with radial velocity component, and the simulation results also confirm the correctness of the established model of antenna.

  18. Nuclear reactor core modelling in multifunctional simulators

    Energy Technology Data Exchange (ETDEWEB)

    Puska, E.K. [VTT Energy, Nuclear Energy, Espoo (Finland)

    1999-06-01

    The thesis concentrates on the development of nuclear reactor core models for the APROS multifunctional simulation environment and the use of the core models in various kinds of applications. The work was started in 1986 as a part of the development of the entire APROS simulation system. The aim was to create core models that would serve in a reliable manner in an interactive, modular and multifunctional simulator/plant analyser environment. One-dimensional and three-dimensional core neutronics models have been developed. Both models have two energy groups and six delayed neutron groups. The three-dimensional finite difference type core model is able to describe both BWR- and PWR-type cores with quadratic fuel assemblies and VVER-type cores with hexagonal fuel assemblies. The one- and three-dimensional core neutronics models can be connected with the homogeneous, the five-equation or the six-equation thermal hydraulic models of APROS. The key feature of APROS is that the same physical models can be used in various applications. The nuclear reactor core models of APROS have been built in such a manner that the same models can be used in simulator and plant analyser applications, as well as in safety analysis. In the APROS environment the user can select the number of flow channels in the three-dimensional reactor core and either the homogeneous, the five- or the six-equation thermal hydraulic model for these channels. The thermal hydraulic model and the number of flow channels have a decisive effect on the calculation time of the three-dimensional core model and thus, at present, these particular selections make the major difference between a safety analysis core model and a training simulator core model. The emphasis on this thesis is on the three-dimensional core model and its capability to analyse symmetric and asymmetric events in the core. The factors affecting the calculation times of various three-dimensional BWR, PWR and WWER-type APROS core models have been

  19. Battery thermal models for hybrid vehicle simulations

    Science.gov (United States)

    Pesaran, Ahmad A.

    This paper summarizes battery thermal modeling capabilities for: (1) an advanced vehicle simulator (ADVISOR); and (2) battery module and pack thermal design. The National Renewable Energy Laboratory's (NREL's) ADVISOR is developed in the Matlab/Simulink environment. There are several battery models in ADVISOR for various chemistry types. Each one of these models requires a thermal model to predict the temperature change that could affect battery performance parameters, such as resistance, capacity and state of charges. A lumped capacitance battery thermal model in the Matlab/Simulink environment was developed that included the ADVISOR battery performance models. For thermal evaluation and design of battery modules and packs, NREL has been using various computer aided engineering tools including commercial finite element analysis software. This paper will discuss the thermal ADVISOR battery model and its results, along with the results of finite element modeling that were presented at the workshop on "Development of Advanced Battery Engineering Models" in August 2001.

  20. Nanoindentation shape effect: experiments, simulations and modelling

    Energy Technology Data Exchange (ETDEWEB)

    Calabri, L [CNR-INFM-National Research Center on nanoStructures and bioSystems at Surfaces (S3), Via Campi 213/a, 41100 Modena (Italy); Pugno, N [Department of Structural Engineering, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Turin (Italy); Rota, A [CNR-INFM-National Research Center on nanoStructures and bioSystems at Surfaces (S3), Via Campi 213/a, 41100 Modena (Italy); Marchetto, D [CNR-INFM-National Research Center on nanoStructures and bioSystems at Surfaces (S3), Via Campi 213/a, 41100 Modena (Italy); Valeri, S [CNR-INFM-National Research Center on nanoStructures and bioSystems at Surfaces (S3), Via Campi 213/a, 41100 Modena (Italy)

    2007-10-03

    AFM nanoindentation is nowadays commonly used for the study of mechanical properties of materials at the nanoscale. The investigation of surface hardness of a material using AFM means that the probe has to be able to indent the surface, but also to image it. Usually standard indenters are not sharp enough to obtain high-resolution images, but on the other hand measuring the hardness behaviour of a material with a non-standard sharp indenter gives only comparative results affected by a significant deviation from the commonly used hardness scales. In this paper we try to understand how the shape of the indenter affects the hardness measurement, in order to find a relationship between the measured hardness of a material and the corner angle of a pyramidal indenter. To achieve this we performed a full experimental campaign, indenting the same material with three focused ion beam (FIB) nanofabricated probes with a highly altered corner angle. We then compared the results obtained experimentally with those obtained by numerical simulations, using the finite element method (FEM), and by theoretical models, using a general scaling law for nanoindentation available for indenters with a variable size and shape. The comparison between these three approaches (experimental, numerical and theoretical approaches) reveals a good agreement and allowed us to find a theoretical relationship which links the measured hardness value with the shape of the indenter. The same theoretical approach has also been used to fit the hardness experimental results considering the indentation size effect. In this case we compare the measured data, changing the applied load.

  1. Insights revealed by rodent models of sugar binge eating.

    Science.gov (United States)

    Murray, Susan M; Tulloch, Alastair J; Chen, Eunice Y; Avena, Nicole M

    2015-12-01

    Binge eating is seen across the spectrum of eating disorder diagnoses as well as among individuals who do not meet diagnostic criteria. Analyses of the specific types of foods that are frequently binged upon reveal that sugar-rich items feature prominently in binge-type meals, making the effects of binge consumption of sugar an important focus of study. One avenue to do this involves the use of animal models. Foundational and recent studies of animal models of sugar bingeing, both outlined here, lend insight into the various neurotransmitters and neuropeptides that may participate in or be altered by this behavior. Further, several preclinical studies incorporating sugar bingeing paradigms have explored the utility of pharmacological agents that target such neural systems for reducing sugar bingeing in an effort to enhance clinical treatment. Indeed, the translational implications of findings generated using animal models of sugar bingeing are considered here, along with potential avenues for further study.

  2. Kanban simulation model for production process optimization

    Directory of Open Access Journals (Sweden)

    Golchev Riste

    2015-01-01

    Full Text Available A long time has passed since the KANBAN system has been established as an efficient method for coping with the excessive inventory. Still, the possibilities for its improvement through its integration with other different approaches should be investigated further. The basic research challenge of this paper is to present benefits of KANBAN implementation supported with Discrete Event Simulation (DES. In that direction, at the beginning, the basics of KANBAN system are presented with emphasis on the information and material flow, together with a methodology for implementation of KANBAN system. Certain analysis on combining the simulation with this methodology is presented. The paper is concluded with a practical example which shows that through understanding the philosophy of the implementation methodology of KANBAN system and the simulation methodology, a simulation model can be created which can serve as a basis for a variety of experiments that can be conducted within a short period of time, resulting with production process optimization.

  3. Revealing Atomic-Level Mechanisms of Protein Allostery with Molecular Dynamics Simulations.

    Directory of Open Access Journals (Sweden)

    Samuel Hertig

    2016-06-01

    Full Text Available Molecular dynamics (MD simulations have become a powerful and popular method for the study of protein allostery, the widespread phenomenon in which a stimulus at one site on a protein influences the properties of another site on the protein. By capturing the motions of a protein's constituent atoms, simulations can enable the discovery of allosteric binding sites and the determination of the mechanistic basis for allostery. These results can provide a foundation for applications including rational drug design and protein engineering. Here, we provide an introduction to the investigation of protein allostery using molecular dynamics simulation. We emphasize the importance of designing simulations that include appropriate perturbations to the molecular system, such as the addition or removal of ligands or the application of mechanical force. We also demonstrate how the bidirectional nature of allostery-the fact that the two sites involved influence one another in a symmetrical manner-can facilitate such investigations. Through a series of case studies, we illustrate how these concepts have been used to reveal the structural basis for allostery in several proteins and protein complexes of biological and pharmaceutical interest.

  4. Revealing Atomic-Level Mechanisms of Protein Allostery with Molecular Dynamics Simulations.

    Science.gov (United States)

    Hertig, Samuel; Latorraca, Naomi R; Dror, Ron O

    2016-06-01

    Molecular dynamics (MD) simulations have become a powerful and popular method for the study of protein allostery, the widespread phenomenon in which a stimulus at one site on a protein influences the properties of another site on the protein. By capturing the motions of a protein's constituent atoms, simulations can enable the discovery of allosteric binding sites and the determination of the mechanistic basis for allostery. These results can provide a foundation for applications including rational drug design and protein engineering. Here, we provide an introduction to the investigation of protein allostery using molecular dynamics simulation. We emphasize the importance of designing simulations that include appropriate perturbations to the molecular system, such as the addition or removal of ligands or the application of mechanical force. We also demonstrate how the bidirectional nature of allostery-the fact that the two sites involved influence one another in a symmetrical manner-can facilitate such investigations. Through a series of case studies, we illustrate how these concepts have been used to reveal the structural basis for allostery in several proteins and protein complexes of biological and pharmaceutical interest.

  5. Random field model reveals structure of the protein recombinational landscape.

    Directory of Open Access Journals (Sweden)

    Philip A Romero

    Full Text Available We are interested in how intragenic recombination contributes to the evolution of proteins and how this mechanism complements and enhances the diversity generated by random mutation. Experiments have revealed that proteins are highly tolerant to recombination with homologous sequences (mutation by recombination is conservative; more surprisingly, they have also shown that homologous sequence fragments make largely additive contributions to biophysical properties such as stability. Here, we develop a random field model to describe the statistical features of the subset of protein space accessible by recombination, which we refer to as the recombinational landscape. This model shows quantitative agreement with experimental results compiled from eight libraries of proteins that were generated by recombining gene fragments from homologous proteins. The model reveals a recombinational landscape that is highly enriched in functional sequences, with properties dominated by a large-scale additive structure. It also quantifies the relative contributions of parent sequence identity, crossover locations, and protein fold to the tolerance of proteins to recombination. Intragenic recombination explores a unique subset of sequence space that promotes rapid molecular diversification and functional adaptation.

  6. Electrophysiological potentials reveal cortical mechanisms for mental imagery, mental simulation, and grounded (embodied cognition

    Directory of Open Access Journals (Sweden)

    Haline E. Schendan

    2012-09-01

    Full Text Available Grounded cognition theory proposes that cognition, including meaning, is grounded in sensorimotor processing. The mechanism for grounding cognition is mental simulation, which is a type of mental imagery that re-enacts modal processing. To reveal top-down, cortical mechanisms for mental simulation of shape, event-related potentials were recorded to face and object pictures preceded by mental imagery of a picture. Mental imagery of the identical face or object (congruous condition facilitated not only categorical perception (VPP/N170 but also later visual knowledge (N3[00] complex and linguistic knowledge (N400 for faces more than objects, and strategic semantic analysis (late positive complex between 200 and 700 ms. The later effects resembled semantic congruity effects with pictures. Mental imagery also facilitated category decisions, as a P3(00 peaked earlier for congruous than incongruous (other category pictures, resembling the case when identical pictures repeat immediately. Thus mental imagery mimics semantic congruity and immediate repetition priming processes with pictures. Perception control results showed the opposite for faces and were in the same direction for objects: Perceptual repetition adapts (and so impairs processing of perceived faces from categorical perception onwards, but primes processing of objects during categorical perception, visual knowledge processes, and strategic semantic analysis. For both imagery and perception, differences between faces and objects support domain-specificity and indicate that cognition is grounded in modal processing. Altogether, this direct neural evidence reveals that top-down processes of mental imagery sustain an imagistic representation that mimics perception well enough to prime subsequent perception and cognition. This also suggests that automatic mental simulation of the visual shape of faces and objects operates between 200 and 400 ms, and strategic mental simulation operates between

  7. TRANSFORM - TRANsient Simulation Framework of Reconfigurable Models

    Energy Technology Data Exchange (ETDEWEB)

    2017-09-01

    Existing development tools for early stage design and scoping of energy systems are often time consuming to use, proprietary, and do not contain the necessary function to model complete systems (i.e., controls, primary, and secondary systems) in a common platform. The Modelica programming language based TRANSFORM tool (1) provides a standardized, common simulation environment for early design of energy systems (i.e., power plants), (2) provides a library of baseline component modules to be assembled into full plant models using available geometry, design, and thermal-hydraulic data, (3) defines modeling conventions for interconnecting component models, and (4) establishes user interfaces and support tools to facilitate simulation development (i.e., configuration and parameterization), execution, and results display and capture.

  8. EXACT SIMULATION OF A BOOLEAN MODEL

    Directory of Open Access Journals (Sweden)

    Christian Lantuéjoul

    2013-06-01

    Full Text Available A Boolean model is a union of independent objects (compact random subsets located at Poisson points. Two algorithms are proposed for simulating a Boolean model in a bounded domain. The first one applies only to stationary models. It generates the objects prior to their Poisson locations. Two examples illustrate its applicability. The second algorithm applies to stationary and non-stationary models. It generates the Poisson points prior to the objects. Its practical difficulties of implementation are discussed. Both algorithms are based on importance sampling techniques, and the generated objects are weighted.

  9. Biological transportation networks: Modeling and simulation

    KAUST Repository

    Albi, Giacomo

    2015-09-15

    We present a model for biological network formation originally introduced by Cai and Hu [Adaptation and optimization of biological transport networks, Phys. Rev. Lett. 111 (2013) 138701]. The modeling of fluid transportation (e.g., leaf venation and angiogenesis) and ion transportation networks (e.g., neural networks) is explained in detail and basic analytical features like the gradient flow structure of the fluid transportation network model and the impact of the model parameters on the geometry and topology of network formation are analyzed. We also present a numerical finite-element based discretization scheme and discuss sample cases of network formation simulations.

  10. Modeling and Simulation of Nuclear Fuel Materials

    Energy Technology Data Exchange (ETDEWEB)

    Devanathan, Ramaswami; Van Brutzel, Laurent; Chartier, Alan; Gueneau, Christine; Mattsson, Ann E.; Tikare, Veena; Bartel, Timothy; Besmann, T. M.; Stan, Marius; Van Uffelen, Paul

    2010-10-01

    We review the state of modeling and simulation of nuclear fuels with emphasis on the most widely used nuclear fuel, UO2. The hierarchical scheme presented represents a science-based approach to modeling nuclear fuels by progressively passing information in several stages from ab initio to continuum levels. Such an approach is essential to overcome the challenges posed by radioactive materials handling, experimental limitations in modeling extreme conditions and accident scenarios, and the small time and distance scales of fundamental defect processes. When used in conjunction with experimental validation, this multiscale modeling scheme can provide valuable guidance to development of fuel for advanced reactors to meet rising global energy demand.

  11. Simulation modeling of health care policy.

    Science.gov (United States)

    Glied, Sherry; Tilipman, Nicholas

    2010-01-01

    Simulation modeling of health reform is a standard part of policy development and, in the United States, a required element in enacting health reform legislation. Modelers use three types of basic structures to build models of the health system: microsimulation, individual choice, and cell-based. These frameworks are filled in with data on baseline characteristics of the system and parameters describing individual behavior. Available data on baseline characteristics are imprecise, and estimates of key empirical parameters vary widely. A comparison of estimated and realized consequences of several health reform proposals suggests that models provided reasonably accurate estimates, with confidence bounds of approximately 30%.

  12. Revealing structural and dynamical properties of high density lipoproteins through molecular simulations

    DEFF Research Database (Denmark)

    Koivuniemi, A.; Vattulainen, I.

    2012-01-01

    The structure and function of high density lipoprotein (HDL) particles have intrigued the scientific community for decades because of their crucial preventive role in coronary heart disease. However, it has been a taunting task to reveal the precise molecular structure and dynamics of HDL. Further......, because of the complex composition of HDL, understanding the impact of its structure and dynamics on the function of HDL in reverse cholesterol transport has also been a major issue. Recent progress in molecular simulation methodology and computing power has made a difference, as it has enabled...... essentially atomistic considerations of HDL particles over microsecond time scales, thereby proving substantial added value to experimental research. In this article, we discuss recent highlights concerning the structure and dynamics of HDL particles as revealed by atomistic and coarse-grained molecular...

  13. Modeling and simulation of epidemic spread

    DEFF Research Database (Denmark)

    Shatnawi, Maad; Lazarova-Molnar, Sanja; Zaki, Nazar

    2013-01-01

    and control such epidemics. This paper presents an overview of the epidemic spread modeling and simulation, and summarizes the main technical challenges in this field. It further investigates the most relevant recent approaches carried out towards this perspective and provides a comparison and classification...

  14. Object Oriented Modelling and Dynamical Simulation

    DEFF Research Database (Denmark)

    Wagner, Falko Jens; Poulsen, Mikael Zebbelin

    1998-01-01

    This report with appendix describes the work done in master project at DTU.The goal of the project was to develop a concept for simulation of dynamical systems based on object oriented methods.The result was a library of C++-classes, for use when both building componentbased models and when...

  15. Modeling and Simulating Virtual Anatomical Humans

    NARCIS (Netherlands)

    Madehkhaksar, Forough; Luo, Zhiping; Pronost, Nicolas; Egges, Arjan

    2014-01-01

    This chapter presents human musculoskeletal modeling and simulation as a challenging field that lies between biomechanics and computer animation. One of the main goals of computer animation research is to develop algorithms and systems that produce plausible motion. On the other hand, the main chall

  16. Modeling and Simulation in Healthcare Future Directions

    Science.gov (United States)

    2010-07-13

    Quantify performance (Competency - based) 6. Simulate before practice ( Digital Libraries ) Classic Education and Examination What is the REVOLUTION in...av $800,000 yr 2.) Actor patients - $250,000 – $400,000/yr 2. Digital Libraries or synthetic tissue models a. Subscription vs up-front costs

  17. Simulation Versus Models: Which One and When?

    Science.gov (United States)

    Dorn, William S.

    1975-01-01

    Describes two types of computer-based experiments: simulation (which assumes no student knowledge of the workings of the computer program) is recommended for experiments aimed at inductive reasoning; and modeling (which assumes student understanding of the computer program) is recommended for deductive processes. (MLH)

  18. Love Kills:. Simulations in Penna Ageing Model

    Science.gov (United States)

    Stauffer, Dietrich; Cebrat, Stanisław; Penna, T. J. P.; Sousa, A. O.

    The standard Penna ageing model with sexual reproduction is enlarged by adding additional bit-strings for love: Marriage happens only if the male love strings are sufficiently different from the female ones. We simulate at what level of required difference the population dies out.

  19. Inverse modeling for Large-Eddy simulation

    NARCIS (Netherlands)

    Geurts, Bernardus J.

    1998-01-01

    Approximate higher order polynomial inversion of the top-hat filter is developed with which the turbulent stress tensor in Large-Eddy Simulation can be consistently represented using the filtered field. Generalized (mixed) similarity models are proposed which improved the agreement with the kinetic

  20. Microdata Simulation Modeling After Twenty Years.

    Science.gov (United States)

    Haveman, Robert H.

    1986-01-01

    This article describes the method and the development of microdata simulation modeling over the past two decades. After tracing a brief history of this evaluation method, its problems and prospects are assessed. The effects of this research method on the development of the social sciences are examined. (JAZ)

  1. Simulation Modeling on the Macintosh using STELLA.

    Science.gov (United States)

    Costanza, Robert

    1987-01-01

    Describes a new software package for the Apple Macintosh computer which can be used to create elaborate simulation models in a fraction of the time usually required without using a programming language. Illustrates the use of the software which relates to water usage. (TW)

  2. Simulation Modeling of Radio Direction Finding Results

    Directory of Open Access Journals (Sweden)

    K. Pelikan

    1994-12-01

    Full Text Available It is sometimes difficult to determine analytically error probabilities of direction finding results for evaluating algorithms of practical interest. Probalistic simulation models are described in this paper that can be to study error performance of new direction finding systems or to geographical modifications of existing configurations.

  3. A Prison/Parole System Simulation Model,

    Science.gov (United States)

    parole system on future prison and parole populations. A simulation model is presented, viewing a prison / parole system as a feedback process for...ciminal offenders . Transitions among the states in which an offender might be located, imprisoned, paroled , and discharged, are assumed to be in...accordance with a discrete time semi-Markov process. Projected prison and parole populations for sample data and applications of the model are discussed. (Author)

  4. Integrative modelling reveals mechanisms linking productivity and plant species richness.

    Science.gov (United States)

    Grace, James B; Anderson, T Michael; Seabloom, Eric W; Borer, Elizabeth T; Adler, Peter B; Harpole, W Stanley; Hautier, Yann; Hillebrand, Helmut; Lind, Eric M; Pärtel, Meelis; Bakker, Jonathan D; Buckley, Yvonne M; Crawley, Michael J; Damschen, Ellen I; Davies, Kendi F; Fay, Philip A; Firn, Jennifer; Gruner, Daniel S; Hector, Andy; Knops, Johannes M H; MacDougall, Andrew S; Melbourne, Brett A; Morgan, John W; Orrock, John L; Prober, Suzanne M; Smith, Melinda D

    2016-01-21

    How ecosystem productivity and species richness are interrelated is one of the most debated subjects in the history of ecology. Decades of intensive study have yet to discern the actual mechanisms behind observed global patterns. Here, by integrating the predictions from multiple theories into a single model and using data from 1,126 grassland plots spanning five continents, we detect the clear signals of numerous underlying mechanisms linking productivity and richness. We find that an integrative model has substantially higher explanatory power than traditional bivariate analyses. In addition, the specific results unveil several surprising findings that conflict with classical models. These include the isolation of a strong and consistent enhancement of productivity by richness, an effect in striking contrast with superficial data patterns. Also revealed is a consistent importance of competition across the full range of productivity values, in direct conflict with some (but not all) proposed models. The promotion of local richness by macroecological gradients in climatic favourability, generally seen as a competing hypothesis, is also found to be important in our analysis. The results demonstrate that an integrative modelling approach leads to a major advance in our ability to discern the underlying processes operating in ecological systems.

  5. Twitter's tweet method modelling and simulation

    Science.gov (United States)

    Sarlis, Apostolos S.; Sakas, Damianos P.; Vlachos, D. S.

    2015-02-01

    This paper seeks to purpose the concept of Twitter marketing methods. The tools that Twitter provides are modelled and simulated using iThink in the context of a Twitter media-marketing agency. The paper has leveraged the system's dynamic paradigm to conduct Facebook marketing tools and methods modelling, using iThink™ system to implement them. It uses the design science research methodology for the proof of concept of the models and modelling processes. The following models have been developed for a twitter marketing agent/company and tested in real circumstances and with real numbers. These models were finalized through a number of revisions and iterators of the design, develop, simulate, test and evaluate. It also addresses these methods that suit most organized promotion through targeting, to the Twitter social media service. The validity and usefulness of these Twitter marketing methods models for the day-to-day decision making are authenticated by the management of the company organization. It implements system dynamics concepts of Twitter marketing methods modelling and produce models of various Twitter marketing situations. The Tweet method that Twitter provides can be adjusted, depending on the situation, in order to maximize the profit of the company/agent.

  6. Demand Model Combining Stated And Revealed Preference Data

    Directory of Open Access Journals (Sweden)

    Luciana Londero Brandli

    2007-10-01

    Full Text Available The revealed and stated preference methods have been contributing a lot for the development of the econometric literature in the attempt of determining the variables that influence the individual decision in a choice process. This article combines preference data, with the objective of obtaining the advantages of the complementarity of the forces and frankness of both types of data. The approach involves the estimate of a model only with RP data, only with SP data and combining RP and SP data. The application is in the housing market, where it is observed, through the literature, that most of the papers of the consumer's choice has restricted the only one approaches. The utility functions obtained show the relative importance of the attributes, the tendency of behavior through the signs and its significance statistical. The results analysis of the models indicates differences and similarities about the attribute’s behavior.

  7. Parameter identification using stochastic simulations reveals a robustness in CD95 apoptotic response.

    Science.gov (United States)

    Zimmer, Christoph; Schleich, Kolja; Lavrik, Inna

    2016-04-26

    A number of mathematical models of apoptosis generated recently allowed us to understand intrinsic mechanisms of life/death decisions in a cell. Nevertheless, the parameters for the mathematical models are often experimentally difficult to obtain and there is an emerging need for the development of efficient approaches for parameter estimation. In this study we suggest a new method for parameter estimation, which is based on stochastic simulations and can be used when the number of molecules in the system is small. Our approach comprised the following steps: we start from the selection of parameters that lead to a good ordinary differential equation (ODE) fit. We continued by carrying out stochastic simulations for each of these parameters. Comparing the correlation structure of these simulations with the data, we finally could identify the best parameter set. The method was applied for a model of CD95-induced apoptosis, the new best identified parameters fit well to the experimental data. The best parameter set allowed us to get new insights into CD95 apoptosis regulation and can be applied for the comprehensive analysis of other signaling networks. The modeling approach allowed us to get new insights into network regulation, in particular, to identify robustness in CD95 apoptotic response. Taken together, this new method provides valuable predictions and can be applied for the analysis of other signaling networks.

  8. Empirical evidence for musical syntax processing? Computer simulations reveal the contribution of auditory short-term memory

    Directory of Open Access Journals (Sweden)

    Emmanuel eBigand

    2014-06-01

    Full Text Available During the last decade, it has been argued that 1 music processing involves syntactic representations similar to those observed in language, and 2 that music and language share similar syntactic-like processes and neural resources. This claim is important for understanding the origin of music and language abilities and, furthermore, it has clinical implications. The Western musical system, however, is rooted in psychoacoustic properties of sound, and this is not the case for linguistic syntax. Accordingly, musical syntax processing could be parsimoniously understood as an emergent property of auditory memory rather than a property of abstract processing similar to linguistic processing. To support this view, we simulated numerous empirical studies that investigated the processing of harmonic structures, using a model based on the accumulation of sensory information in auditory memory. The simulations revealed that most of the musical syntax manipulations used with behavioral and neurophysiological methods as well as with developmental and cross-cultural approaches can be accounted for by the auditory memory model. This led us to question whether current research on musical syntax can really be compared with linguistic processing. Our simulation also raises methodological and theoretical challenges to study musical syntax while disentangling the confounded low-level sensory influences. In order to investigate syntactic abilities in music comparable to language, research should preferentially use musical material with structures that circumvent the tonal effect exerted by psychoacoustic properties of sounds.

  9. Empirical evidence for musical syntax processing? Computer simulations reveal the contribution of auditory short-term memory.

    Science.gov (United States)

    Bigand, Emmanuel; Delbé, Charles; Poulin-Charronnat, Bénédicte; Leman, Marc; Tillmann, Barbara

    2014-01-01

    During the last decade, it has been argued that (1) music processing involves syntactic representations similar to those observed in language, and (2) that music and language share similar syntactic-like processes and neural resources. This claim is important for understanding the origin of music and language abilities and, furthermore, it has clinical implications. The Western musical system, however, is rooted in psychoacoustic properties of sound, and this is not the case for linguistic syntax. Accordingly, musical syntax processing could be parsimoniously understood as an emergent property of auditory memory rather than a property of abstract processing similar to linguistic processing. To support this view, we simulated numerous empirical studies that investigated the processing of harmonic structures, using a model based on the accumulation of sensory information in auditory memory. The simulations revealed that most of the musical syntax manipulations used with behavioral and neurophysiological methods as well as with developmental and cross-cultural approaches can be accounted for by the auditory memory model. This led us to question whether current research on musical syntax can really be compared with linguistic processing. Our simulation also raises methodological and theoretical challenges to study musical syntax while disentangling the confounded low-level sensory influences. In order to investigate syntactic abilities in music comparable to language, research should preferentially use musical material with structures that circumvent the tonal effect exerted by psychoacoustic properties of sounds.

  10. Empirical evidence for musical syntax processing? Computer simulations reveal the contribution of auditory short-term memory

    Science.gov (United States)

    Bigand, Emmanuel; Delbé, Charles; Poulin-Charronnat, Bénédicte; Leman, Marc; Tillmann, Barbara

    2014-01-01

    During the last decade, it has been argued that (1) music processing involves syntactic representations similar to those observed in language, and (2) that music and language share similar syntactic-like processes and neural resources. This claim is important for understanding the origin of music and language abilities and, furthermore, it has clinical implications. The Western musical system, however, is rooted in psychoacoustic properties of sound, and this is not the case for linguistic syntax. Accordingly, musical syntax processing could be parsimoniously understood as an emergent property of auditory memory rather than a property of abstract processing similar to linguistic processing. To support this view, we simulated numerous empirical studies that investigated the processing of harmonic structures, using a model based on the accumulation of sensory information in auditory memory. The simulations revealed that most of the musical syntax manipulations used with behavioral and neurophysiological methods as well as with developmental and cross-cultural approaches can be accounted for by the auditory memory model. This led us to question whether current research on musical syntax can really be compared with linguistic processing. Our simulation also raises methodological and theoretical challenges to study musical syntax while disentangling the confounded low-level sensory influences. In order to investigate syntactic abilities in music comparable to language, research should preferentially use musical material with structures that circumvent the tonal effect exerted by psychoacoustic properties of sounds. PMID:24936174

  11. Fault diagnosis based on continuous simulation models

    Science.gov (United States)

    Feyock, Stefan

    1987-01-01

    The results are described of an investigation of techniques for using continuous simulation models as basis for reasoning about physical systems, with emphasis on the diagnosis of system faults. It is assumed that a continuous simulation model of the properly operating system is available. Malfunctions are diagnosed by posing the question: how can we make the model behave like that. The adjustments that must be made to the model to produce the observed behavior usually provide definitive clues to the nature of the malfunction. A novel application of Dijkstra's weakest precondition predicate transformer is used to derive the preconditions for producing the required model behavior. To minimize the size of the search space, an envisionment generator based on interval mathematics was developed. In addition to its intended application, the ability to generate qualitative state spaces automatically from quantitative simulations proved to be a fruitful avenue of investigation in its own right. Implementations of the Dijkstra transform and the envisionment generator are reproduced in the Appendix.

  12. Modelling and simulation of affinity membrane adsorption.

    Science.gov (United States)

    Boi, Cristiana; Dimartino, Simone; Sarti, Giulio C

    2007-08-24

    A mathematical model for the adsorption of biomolecules on affinity membranes is presented. The model considers convection, diffusion and adsorption kinetics on the membrane module as well as the influence of dead end volumes and lag times; an analysis of flow distribution on the whole system is also included. The parameters used in the simulations were obtained from equilibrium and dynamic experimental data measured for the adsorption of human IgG on A2P-Sartoepoxy affinity membranes. The identification of a bi-Langmuir kinetic mechanisms for the experimental system investigated was paramount for a correct process description and the simulated breakthrough curves were in good agreement with the experimental data. The proposed model provides a new insight into the phenomena involved in the adsorption on affinity membranes and it is a valuable tool to assess the use of membrane adsorbers in large scale processes.

  13. Multiphase reacting flows modelling and simulation

    CERN Document Server

    Marchisio, Daniele L

    2007-01-01

    The papers in this book describe the most widely applicable modeling approaches and are organized in six groups covering from fundamentals to relevant applications. In the first part, some fundamentals of multiphase turbulent reacting flows are covered. In particular the introduction focuses on basic notions of turbulence theory in single-phase and multi-phase systems as well as on the interaction between turbulence and chemistry. In the second part, models for the physical and chemical processes involved are discussed. Among other things, particular emphasis is given to turbulence modeling strategies for multiphase flows based on the kinetic theory for granular flows. Next, the different numerical methods based on Lagrangian and/or Eulerian schemes are presented. In particular the most popular numerical approaches of computational fluid dynamics codes are described (i.e., Direct Numerical Simulation, Large Eddy Simulation, and Reynolds-Averaged Navier-Stokes approach). The book will cover particle-based meth...

  14. Modeling, simulation and optimization of bipedal walking

    CERN Document Server

    Berns, Karsten

    2013-01-01

    The model-based investigation of motions of anthropomorphic systems is an important interdisciplinary research topic involving specialists from many fields such as Robotics, Biomechanics, Physiology, Orthopedics, Psychology, Neurosciences, Sports, Computer Graphics and Applied Mathematics. This book presents a study of basic locomotion forms such as walking and running is of particular interest due to the high demand on dynamic coordination, actuator efficiency and balance control. Mathematical models and numerical simulation and optimization techniques are explained, in combination with experimental data, which can help to better understand the basic underlying mechanisms of these motions and to improve them. Example topics treated in this book are Modeling techniques for anthropomorphic bipedal walking systems Optimized walking motions for different objective functions Identification of objective functions from measurements Simulation and optimization approaches for humanoid robots Biologically inspired con...

  15. A Superbubble Feedback Model for Galaxy Simulations

    CERN Document Server

    Keller, B W; Benincasa, S M; Couchman, H M P

    2014-01-01

    We present a new stellar feedback model that reproduces superbubbles. Superbubbles from clustered young stars evolve quite differently to individual supernovae and are substantially more efficient at generating gas motions. The essential new components of the model are thermal conduction, sub-grid evaporation and a sub-grid multi-phase treatment for cases where the simulation mass resolution is insufficient to model the early stages of the superbubble. The multi-phase stage is short compared to superbubble lifetimes. Thermal conduction physically regulates the hot gas mass without requiring a free parameter. Accurately following the hot component naturally avoids overcooling. Prior approaches tend to heat too much mass, leaving the hot ISM below $10^6$ K and susceptible to rapid cooling unless ad-hoc fixes were used. The hot phase also allows feedback energy to correctly accumulate from multiple, clustered sources, including stellar winds and supernovae. We employ high-resolution simulations of a single star ...

  16. Advancing Material Models for Automotive Forming Simulations

    Science.gov (United States)

    Vegter, H.; An, Y.; ten Horn, C. H. L. J.; Atzema, E. H.; Roelofsen, M. E.

    2005-08-01

    Simulations in automotive industry need more advanced material models to achieve highly reliable forming and springback predictions. Conventional material models implemented in the FEM-simulation models are not capable to describe the plastic material behaviour during monotonic strain paths with sufficient accuracy. Recently, ESI and Corus co-operate on the implementation of an advanced material model in the FEM-code PAMSTAMP 2G. This applies to the strain hardening model, the influence of strain rate, and the description of the yield locus in these models. A subsequent challenge is the description of the material after a change of strain path. The use of advanced high strength steels in the automotive industry requires a description of plastic material behaviour of multiphase steels. The simplest variant is dual phase steel consisting of a ferritic and a martensitic phase. Multiphase materials also contain a bainitic phase in addition to the ferritic and martensitic phase. More physical descriptions of strain hardening than simple fitted Ludwik/Nadai curves are necessary. Methods to predict plastic behaviour of single-phase materials use a simple dislocation interaction model based on the formed cells structures only. At Corus, a new method is proposed to predict plastic behaviour of multiphase materials have to take hard phases into account, which deform less easily. The resulting deformation gradients create geometrically necessary dislocations. Additional micro-structural information such as morphology and size of hard phase particles or grains is necessary to derive the strain hardening models for this type of materials. Measurements available from the Numisheet benchmarks allow these models to be validated. At Corus, additional measured values are available from cross-die tests. This laboratory test can attain critical deformations by large variations in blank size and processing conditions. The tests are a powerful tool in optimising forming simulations

  17. Modelling and simulation of thermal power plants

    Energy Technology Data Exchange (ETDEWEB)

    Eborn, J.

    1998-02-01

    Mathematical modelling and simulation are important tools when dealing with engineering systems that today are becoming increasingly more complex. Integrated production and recycling of materials are trends that give rise to heterogenous systems, which are difficult to handle within one area of expertise. Model libraries are an excellent way to package engineering knowledge of systems and units to be reused by those who are not experts in modelling. Many commercial packages provide good model libraries, but they are usually domain-specific and closed. Heterogenous, multi-domain systems requires open model libraries written in general purpose modelling languages. This thesis describes a model database for thermal power plants written in the object-oriented modelling language OMOLA. The models are based on first principles. Subunits describe volumes with pressure and enthalpy dynamics and flows of heat or different media. The subunits are used to build basic units such as pumps, valves and heat exchangers which can be used to build system models. Several applications are described; a heat recovery steam generator, equipment for juice blending, steam generation in a sulphuric acid plant and a condensing steam plate heat exchanger. Model libraries for industrial use must be validated against measured data. The thesis describes how parameter estimation methods can be used for model validation. Results from a case-study on parameter optimization of a non-linear drum boiler model show how the technique can be used 32 refs, 21 figs

  18. Dynamics modeling and simulation of flexible airships

    Science.gov (United States)

    Li, Yuwen

    The resurgence of airships has created a need for dynamics models and simulation capabilities of these lighter-than-air vehicles. The focus of this thesis is a theoretical framework that integrates the flight dynamics, structural dynamics, aerostatics and aerodynamics of flexible airships. The study begins with a dynamics model based on a rigid-body assumption. A comprehensive computation of aerodynamic effects is presented, where the aerodynamic forces and moments are categorized into various terms based on different physical effects. A series of prediction approaches for different aerodynamic effects are unified and applied to airships. The numerical results of aerodynamic derivatives and the simulated responses to control surface deflection inputs are verified by comparing to existing wind-tunnel and flight test data. With the validated aerodynamics and rigid-body modeling, the equations of motion of an elastic airship are derived by the Lagrangian formulation. The airship is modeled as a free-free Euler-Bernoulli beam and the bending deformations are represented by shape functions chosen as the free-free normal modes. In order to capture the coupling between the aerodynamic forces and the structural elasticity, local velocity on the deformed vehicle is used in the computation of aerodynamic forces. Finally, with the inertial, gravity, aerostatic and control forces incorporated, the dynamics model of a flexible airship is represented by a single set of nonlinear ordinary differential equations. The proposed model is implemented as a dynamics simulation program to analyze the dynamics characteristics of the Skyship-500 airship. Simulation results are presented to demonstrate the influence of structural deformation on the aerodynamic forces and the dynamics behavior of the airship. The nonlinear equations of motion are linearized numerically for the purpose of frequency domain analysis and for aeroelastic stability analysis. The results from the latter for the

  19. Molecular dynamics simulations reveal proton transfer pathways in cytochrome C-dependent nitric oxide reductase.

    Directory of Open Access Journals (Sweden)

    Andrei V Pisliakov

    Full Text Available Nitric oxide reductases (NORs are membrane proteins that catalyze the reduction of nitric oxide (NO to nitrous oxide (N(2O, which is a critical step of the nitrate respiration process in denitrifying bacteria. Using the recently determined first crystal structure of the cytochrome c-dependent NOR (cNOR [Hino T, Matsumoto Y, Nagano S, Sugimoto H, Fukumori Y, et al. (2010 Structural basis of biological N2O generation by bacterial nitric oxide reductase. Science 330: 1666-70.], we performed extensive all-atom molecular dynamics (MD simulations of cNOR within an explicit membrane/solvent environment to fully characterize water distribution and dynamics as well as hydrogen-bonded networks inside the protein, yielding the atomic details of functionally important proton channels. Simulations reveal two possible proton transfer pathways leading from the periplasm to the active site, while no pathways from the cytoplasmic side were found, consistently with the experimental observations that cNOR is not a proton pump. One of the pathways, which was newly identified in the MD simulation, is blocked in the crystal structure and requires small structural rearrangements to allow for water channel formation. That pathway is equivalent to the functional periplasmic cavity postulated in cbb(3 oxidase, which illustrates that the two enzymes share some elements of the proton transfer mechanisms and confirms a close evolutionary relation between NORs and C-type oxidases. Several mechanisms of the critical proton transfer steps near the catalytic center are proposed.

  20. Mathematical models and numerical simulation in electromagnetism

    CERN Document Server

    Bermúdez, Alfredo; Salgado, Pilar

    2014-01-01

    The book represents a basic support for a master course in electromagnetism oriented to numerical simulation. The main goal of the book is that the reader knows the boundary-value problems of partial differential equations that should be solved in order to perform computer simulation of electromagnetic processes. Moreover it includes a part devoted to electric circuit theory  based on ordinary differential equations. The book is mainly oriented to electric engineering applications, going from the general to the specific, namely, from the full Maxwell’s equations to the particular cases of electrostatics, direct current, magnetostatics and eddy currents models. Apart from standard exercises related to analytical calculus, the book includes some others oriented to real-life applications solved with MaxFEM free simulation software.

  1. Modeling and simulation of economic processes

    Directory of Open Access Journals (Sweden)

    Bogdan Brumar

    2010-12-01

    Full Text Available In general, any activity requires a longer action often characterized by a degree of uncertainty, insecurity, in terms of size of the objective pursued. Because of the complexity of real economic systems, the stochastic dependencies between different variables and parameters considered, not all systems can be adequately represented by a model that can be solved by analytical methods and covering all issues for management decision analysis-economic horizon real. Often in such cases, it is considered that the simulation technique is the only alternative available. Using simulation techniques to study real-world systems often requires a laborious work. Making a simulation experiment is a process that takes place in several stages.

  2. Deep Drawing Simulations With Different Polycrystalline Models

    Science.gov (United States)

    Duchêne, Laurent; de Montleau, Pierre; Bouvier, Salima; Habraken, Anne Marie

    2004-06-01

    The goal of this research is to study the anisotropic material behavior during forming processes, represented by both complex yield loci and kinematic-isotropic hardening models. A first part of this paper describes the main concepts of the `Stress-strain interpolation' model that has been implemented in the non-linear finite element code Lagamine. This model consists of a local description of the yield locus based on the texture of the material through the full constraints Taylor's model. The texture evolution due to plastic deformations is computed throughout the FEM simulations. This `local yield locus' approach was initially linked to the classical isotropic Swift hardening law. Recently, a more complex hardening model was implemented: the physically-based microstructural model of Teodosiu. It takes into account intergranular heterogeneity due to the evolution of dislocation structures, that affects isotropic and kinematic hardening. The influence of the hardening model is compared to the influence of the texture evolution thanks to deep drawing simulations.

  3. Facebook's personal page modelling and simulation

    Science.gov (United States)

    Sarlis, Apostolos S.; Sakas, Damianos P.; Vlachos, D. S.

    2015-02-01

    In this paper we will try to define the utility of Facebook's Personal Page marketing method. This tool that Facebook provides, is modelled and simulated using iThink in the context of a Facebook marketing agency. The paper has leveraged the system's dynamic paradigm to conduct Facebook marketing tools and methods modelling, using iThink™ system to implement them. It uses the design science research methodology for the proof of concept of the models and modelling processes. The following model has been developed for a social media marketing agent/company, Facebook platform oriented and tested in real circumstances. This model is finalized through a number of revisions and iterators of the design, development, simulation, testing and evaluation processes. The validity and usefulness of this Facebook marketing model for the day-to-day decision making are authenticated by the management of the company organization. Facebook's Personal Page method can be adjusted, depending on the situation, in order to maximize the total profit of the company which is to bring new customers, keep the interest of the old customers and deliver traffic to its website.

  4. Modeling and simulation of the human eye

    Science.gov (United States)

    Duran, R.; Ventura, L.; Nonato, L.; Bruno, O.

    2007-02-01

    The computational modeling of the human eye has been wide studied for different sectors of the scientific and technological community. One of the main reasons for this increasing interest is the possibility to reproduce eye optic properties by means of computational simulations, becoming possible the development of efficient devices to treat and to correct the problems of the vision. This work explores this aspect still little investigated of the modeling of the visual system, considering a computational sketch that make possible the use of real data in the modeling and simulation of the human visual system. This new approach makes possible the individual inquiry of the optic system, assisting in the construction of new techniques used to infer vital data in medical investigations. Using corneal topography to collect real data from patients, a computational model of cornea is constructed and a set of simulations were build to ensure the correctness of the system and to investigate the effect of corneal abnormalities in retinal image formation, such as Plcido Discs, Point Spread Function, Wave front and the projection of a real image and it's visualization on retina.

  5. A superbubble feedback model for galaxy simulations

    Science.gov (United States)

    Keller, B. W.; Wadsley, J.; Benincasa, S. M.; Couchman, H. M. P.

    2014-08-01

    We present a new stellar feedback model that reproduces superbubbles. Superbubbles from clustered young stars evolve quite differently to individual supernovae and are substantially more efficient at generating gas motions. The essential new components of the model are thermal conduction, subgrid evaporation and a subgrid multiphase treatment for cases where the simulation mass resolution is insufficient to model the early stages of the superbubble. The multiphase stage is short compared to superbubble lifetimes. Thermal conduction physically regulates the hot gas mass without requiring a free parameter. Accurately following the hot component naturally avoids overcooling. Prior approaches tend to heat too much mass, leaving the hot interstellar medium (ISM) below 106 K and susceptible to rapid cooling unless ad hoc fixes were used. The hot phase also allows feedback energy to correctly accumulate from multiple, clustered sources, including stellar winds and supernovae. We employ high-resolution simulations of a single star cluster to show the model is insensitive to numerical resolution, unresolved ISM structure and suppression of conduction by magnetic fields. We also simulate a Milky Way analogue and a dwarf galaxy. Both galaxies show regulated star formation and produce strong outflows.

  6. Theory, modeling and simulation: Annual report 1993

    Energy Technology Data Exchange (ETDEWEB)

    Dunning, T.H. Jr.; Garrett, B.C.

    1994-07-01

    Developing the knowledge base needed to address the environmental restoration issues of the US Department of Energy requires a fundamental understanding of molecules and their interactions in insolation and in liquids, on surfaces, and at interfaces. To meet these needs, the PNL has established the Environmental and Molecular Sciences Laboratory (EMSL) and will soon begin construction of a new, collaborative research facility devoted to advancing the understanding of environmental molecular science. Research in the Theory, Modeling, and Simulation program (TMS), which is one of seven research directorates in the EMSL, will play a critical role in understanding molecular processes important in restoring DOE`s research, development and production sites, including understanding the migration and reactions of contaminants in soils and groundwater, the development of separation process for isolation of pollutants, the development of improved materials for waste storage, understanding the enzymatic reactions involved in the biodegradation of contaminants, and understanding the interaction of hazardous chemicals with living organisms. The research objectives of the TMS program are to apply available techniques to study fundamental molecular processes involved in natural and contaminated systems; to extend current techniques to treat molecular systems of future importance and to develop techniques for addressing problems that are computationally intractable at present; to apply molecular modeling techniques to simulate molecular processes occurring in the multispecies, multiphase systems characteristic of natural and polluted environments; and to extend current molecular modeling techniques to treat complex molecular systems and to improve the reliability and accuracy of such simulations. The program contains three research activities: Molecular Theory/Modeling, Solid State Theory, and Biomolecular Modeling/Simulation. Extended abstracts are presented for 89 studies.

  7. Simulation modelling of fynbos ecosystems: Systems analysis and conceptual models

    CSIR Research Space (South Africa)

    Kruger, FJ

    1985-03-01

    Full Text Available This report outlines progress with the development of computer based dynamic simulation models for ecosystems in the fynbos biome. The models are planned to run on a portable desktop computer with 500 kbytes of memory, extended BASIC language...

  8. A Model Management Approach for Co-Simulation Model Evaluation

    NARCIS (Netherlands)

    Zhang, X.C.; Broenink, Johannes F.; Filipe, Joaquim; Kacprzyk, Janusz; Pina, Nuno

    2011-01-01

    Simulating formal models is a common means for validating the correctness of the system design and reduce the time-to-market. In most of the embedded control system design, multiple engineering disciplines and various domain-specific models are often involved, such as mechanical, control, software

  9. Modeling of hysteresis loops by Monte Carlo simulation

    Directory of Open Access Journals (Sweden)

    Z. Nehme

    2015-12-01

    Full Text Available Recent advances in MC simulations of magnetic properties are rather devoted to non-interacting systems or ultrafast phenomena, while the modeling of quasi-static hysteresis loops of an assembly of spins with strong internal exchange interactions remains limited to specific cases. In the case of any assembly of magnetic moments, we propose MC simulations on the basis of a three dimensional classical Heisenberg model applied to an isolated magnetic slab involving first nearest neighbors exchange interactions and uniaxial anisotropy. Three different algorithms were successively implemented in order to simulate hysteresis loops: the classical free algorithm, the cone algorithm and a mixed one consisting of adding some global rotations. We focus particularly our study on the impact of varying the anisotropic constant parameter on the coercive field for different temperatures and algorithms. A study of the angular acceptation move distribution allows the dynamics of our simulations to be characterized. The results reveal that the coercive field is linearly related to the anisotropy providing that the algorithm and the numeric conditions are carefully chosen. In a general tendency, it is found that the efficiency of the simulation can be greatly enhanced by using the mixed algorithm that mimic the physics of collective behavior. Consequently, this study lead as to better quantified coercive fields measurements resulting from physical phenomena of complex magnetic (nanoarchitectures with different anisotropy contributions.

  10. Modeling of hysteresis loops by Monte Carlo simulation

    Science.gov (United States)

    Nehme, Z.; Labaye, Y.; Sayed Hassan, R.; Yaacoub, N.; Greneche, J. M.

    2015-12-01

    Recent advances in MC simulations of magnetic properties are rather devoted to non-interacting systems or ultrafast phenomena, while the modeling of quasi-static hysteresis loops of an assembly of spins with strong internal exchange interactions remains limited to specific cases. In the case of any assembly of magnetic moments, we propose MC simulations on the basis of a three dimensional classical Heisenberg model applied to an isolated magnetic slab involving first nearest neighbors exchange interactions and uniaxial anisotropy. Three different algorithms were successively implemented in order to simulate hysteresis loops: the classical free algorithm, the cone algorithm and a mixed one consisting of adding some global rotations. We focus particularly our study on the impact of varying the anisotropic constant parameter on the coercive field for different temperatures and algorithms. A study of the angular acceptation move distribution allows the dynamics of our simulations to be characterized. The results reveal that the coercive field is linearly related to the anisotropy providing that the algorithm and the numeric conditions are carefully chosen. In a general tendency, it is found that the efficiency of the simulation can be greatly enhanced by using the mixed algorithm that mimic the physics of collective behavior. Consequently, this study lead as to better quantified coercive fields measurements resulting from physical phenomena of complex magnetic (nano)architectures with different anisotropy contributions.

  11. eShopper modeling and simulation

    Science.gov (United States)

    Petrushin, Valery A.

    2001-03-01

    The advent of e-commerce gives an opportunity to shift the paradigm of customer communication into a highly interactive mode. The new generation of commercial Web servers, such as the Blue Martini's server, combines the collection of data on a customer behavior with real-time processing and dynamic tailoring of a feedback page. The new opportunities for direct product marketing and cross selling are arriving. The key problem is what kind of information do we need to achieve these goals, or in other words, how do we model the customer? The paper is devoted to customer modeling and simulation. The focus is on modeling an individual customer. The model is based on the customer's transaction data, click stream data, and demographics. The model includes the hierarchical profile of a customer's preferences to different types of products and brands; consumption models for the different types of products; the current focus, trends, and stochastic models for time intervals between purchases; product affinity models; and some generalized features, such as purchasing power, sensitivity to advertising, price sensitivity, etc. This type of model is used for predicting the date of the next visit, overall spending, and spending for different types of products and brands. For some type of stores (for example, a supermarket) and stable customers, it is possible to forecast the shopping lists rather accurately. The forecasting techniques are discussed. The forecasting results can be used for on- line direct marketing, customer retention, and inventory management. The customer model can also be used as a generative model for simulating the customer's purchasing behavior in different situations and for estimating customer's features.

  12. NUMERICAL MODEL APPLICATION IN ROWING SIMULATOR DESIGN

    Directory of Open Access Journals (Sweden)

    Petr Chmátal

    2016-04-01

    Full Text Available The aim of the research was to carry out a hydraulic design of rowing/sculling and paddling simulator. Nowadays there are two main approaches in the simulator design. The first one includes a static water with no artificial movement and counts on specially cut oars to provide the same resistance in the water. The second approach, on the other hand uses pumps or similar devices to force the water to circulate but both of the designs share many problems. Such problems are affecting already built facilities and can be summarized as unrealistic feeling, unwanted turbulent flow and bad velocity profile. Therefore, the goal was to design a new rowing simulator that would provide nature-like conditions for the racers and provide an unmatched experience. In order to accomplish this challenge, it was decided to use in-depth numerical modeling to solve the hydraulic problems. The general measures for the design were taken in accordance with space availability of the simulator ́s housing. The entire research was coordinated with other stages of the construction using BIM. The detailed geometry was designed using a numerical model in Ansys Fluent and parametric auto-optimization tools which led to minimum negative hydraulic phenomena and decreased investment and operational costs due to the decreased hydraulic losses in the system.

  13. Mechanical models of sandfish locomotion reveal principles of high performance subsurface sand-swimming

    Science.gov (United States)

    Maladen, Ryan D.; Ding, Yang; Umbanhowar, Paul B.; Kamor, Adam; Goldman, Daniel I.

    2011-01-01

    We integrate biological experiment, empirical theory, numerical simulation and a physical model to reveal principles of undulatory locomotion in granular media. High-speed X-ray imaging of the sandfish lizard, Scincus scincus, in 3 mm glass particles shows that it swims within the medium without using its limbs by propagating a single-period travelling sinusoidal wave down its body, resulting in a wave efficiency, η, the ratio of its average forward speed to the wave speed, of approximately 0.5. A resistive force theory (RFT) that balances granular thrust and drag forces along the body predicts η close to the observed value. We test this prediction against two other more detailed modelling approaches: a numerical model of the sandfish coupled to a discrete particle simulation of the granular medium, and an undulatory robot that swims within granular media. Using these models and analytical solutions of the RFT, we vary the ratio of undulation amplitude to wavelength (A/λ) and demonstrate an optimal condition for sand-swimming, which for a given A results from the competition between η and λ. The RFT, in agreement with the simulated and physical models, predicts that for a single-period sinusoidal wave, maximal speed occurs for A/λ ≈ 0.2, the same kinematics used by the sandfish. PMID:21378020

  14. Advanced Modeling, Simulation and Analysis (AMSA) Capability Roadmap Progress Review

    Science.gov (United States)

    Antonsson, Erik; Gombosi, Tamas

    2005-01-01

    Contents include the following: NASA capability roadmap activity. Advanced modeling, simulation, and analysis overview. Scientific modeling and simulation. Operations modeling. Multi-special sensing (UV-gamma). System integration. M and S Environments and Infrastructure.

  15. Macro Level Simulation Model Of Space Shuttle Processing

    Science.gov (United States)

    2000-01-01

    The contents include: 1) Space Shuttle Processing Simulation Model; 2) Knowledge Acquisition; 3) Simulation Input Analysis; 4) Model Applications in Current Shuttle Environment; and 5) Model Applications for Future Reusable Launch Vehicles (RLV's). This paper is presented in viewgraph form.

  16. Interactive Modelling and Simulation of Human Motion

    DEFF Research Database (Denmark)

    Engell-Nørregård, Morten Pol

    Dansk resumé Denne ph.d.-afhandling beskæftiger sig med modellering og simulation af menneskelig bevægelse. Emnerne i denne afhandling har mindst to ting til fælles. For det første beskæftiger de sig med menneskelig bevægelse. Selv om de udviklede modeller også kan benyttes til andre ting,er det ....... Endvidere kan den anvendes med enhver softbody simuleringsmodel som finite elements eller mass spring systemer. • En kontrol metode til deformerbare legemer baseret på rum tids opti- mering. fremgangsmåden kan anvendes til at styre sammentrækning af muskler i en muskel simulering....

  17. Computer Modelling and Simulation for Inventory Control

    Directory of Open Access Journals (Sweden)

    G.K. Adegoke

    2012-07-01

    Full Text Available This study concerns the role of computer simulation as a device for conducting scientific experiments on inventory control. The stores function utilizes a bulk of physical assets and engages a bulk of financial resources in a manufacturing outfit therefore there is a need for an efficient inventory control. The reason being that inventory control reduces cost of production and thereby facilitates the effective and efficient accomplishment of production objectives of an organization. Some mathematical and statistical models were used to compute the Economic Order Quantity (EOQ. Test data were gotten from a manufacturing company and same were simulated. The results generated were used to predict a real life situation and have been presented and discussed. The language of implementation for the three models is Turbo Pascal due to its capability, generality and flexibility as a scientific programming language.

  18. Model parameters for simulation of physiological lipids

    Science.gov (United States)

    McGlinchey, Nicholas

    2016-01-01

    Coarse grain simulation of proteins in their physiological membrane environment can offer insight across timescales, but requires a comprehensive force field. Parameters are explored for multicomponent bilayers composed of unsaturated lipids DOPC and DOPE, mixed‐chain saturation POPC and POPE, and anionic lipids found in bacteria: POPG and cardiolipin. A nonbond representation obtained from multiscale force matching is adapted for these lipids and combined with an improved bonding description of cholesterol. Equilibrating the area per lipid yields robust bilayer simulations and properties for common lipid mixtures with the exception of pure DOPE, which has a known tendency to form nonlamellar phase. The models maintain consistency with an existing lipid–protein interaction model, making the force field of general utility for studying membrane proteins in physiologically representative bilayers. © 2016 The Authors. Journal of Computational Chemistry Published by Wiley Periodicals, Inc. PMID:26864972

  19. Theory, Modeling and Simulation Annual Report 2000

    Energy Technology Data Exchange (ETDEWEB)

    Dixon, David A.; Garrett, Bruce C.; Straatsma, Tp; Jones, Donald R.; Studham, Ronald S.; Harrison, Robert J.; Nichols, Jeffrey A.

    2001-11-01

    This annual report describes the 2000 research accomplishments for the Theory, Modeling, and Simulation (TM&S) directorate, one of the six research organizations in the William R. Wiley Environmental Molecular Sciences Laboratory (EMSL) at Pacific Northwest National Laboratory (PNNL). EMSL is a U.S. Department of Energy (DOE) national scientific user facility and is the centerpiece of the DOE commitment to providing world-class experimental, theoretical, and computational capabilities for solving the nation's environmental problems.

  20. Theory, Modeling and Simulation Annual Report 2000

    Energy Technology Data Exchange (ETDEWEB)

    Dixon, David A; Garrett, Bruce C; Straatsma, TP; Jones, Donald R; Studham, Scott; Harrison, Robert J; Nichols, Jeffrey A

    2001-11-01

    This annual report describes the 2000 research accomplishments for the Theory, Modeling, and Simulation (TM and S) directorate, one of the six research organizations in the William R. Wiley Environmental Molecular Sciences Laboratory (EMSL) at Pacific Northwest National Laboratory (PNNL). EMSL is a U.S. Department of Energy (DOE) national scientific user facility and is the centerpiece of the DOE commitment to providing world-class experimental, theoretical, and computational capabilities for solving the nation's environmental problems.

  1. Catalog of Wargaming and Military Simulation Models

    Science.gov (United States)

    1992-02-07

    PROPONENT: USAF ASD, McDonnell Douglas Corp. POINT OF CONTACT: Photon Research Associates (Alias): Mr. Jeff Johnson , (619) 455-9741; McDonnell Douglas...POINTOF CONTACT: Dr. R. Johnson , (DSN) 295-1593 or (301) 295-1593. PURPOSE: The model provides simulation of airland activities in a theater of operations...training, and education. PROPONENT: J-8 Political Military Affairs Directorate. POINT OF CONTACT: LTC Steven G. Stainer . PURPOSE: RDSS is a system

  2. Fully Adaptive Radar Modeling and Simulation Development

    Science.gov (United States)

    2017-04-01

    Organization (NATO) Sensors Electronics Technology (SET)-227 Panel on Cognitive Radar. The FAR M&S architecture developed in Phase I allows for...Air Force’s previously developed radar M&S tools. This report is organized as follows. In Chapter 3, we provide an overview of the FAR framework...AFRL-RY-WP-TR-2017-0074 FULLY ADAPTIVE RADAR MODELING AND SIMULATION DEVELOPMENT Kristine L. Bell and Anthony Kellems Metron, Inc

  3. Difficulties with True Interoperability in Modeling & Simulation

    Science.gov (United States)

    2011-12-01

    Standards in M&S cover multiple layers of technical abstraction. There are middleware specifica- tions, such as the High Level Architecture (HLA) ( IEEE Xplore ... IEEE Xplore Digital Library. 2010. 1516-2010 IEEE Standard for Modeling and Simulation (M&S) High Level Architecture (HLA) – Framework and Rules...using different communication protocols being able to allow da- 2642978-1-4577-2109-0/11/$26.00 ©2011 IEEE Report Documentation Page Form ApprovedOMB No

  4. Simulation modeling of anthrax spore dispersion in a bioterrorism incident.

    Science.gov (United States)

    Reshetin, Vladimir P; Regens, James L

    2003-12-01

    Recent events have increased awareness of the risk posed by terrorist attacks. Bacillus anthracis has resurfaced in the 21st century as a deadly agent of bioterrorism because of its potential for causing massive civilian casualties. This analysis presents the results of a computer simulation of the dispersion of anthrax spores in a typical 50-story, high-rise building after an intentional release during a bioterrorist incident. The model simulates aerosol dispersion in the case of intensive, small-scale convection, which equalizes the concentration of anthrax spores over the building volume. The model can be used to predict the time interval required for spore dispersion throughout a building after a terrorist attack in a high-rise building. The analysis reveals that an aerosol release of even a relatively small volume of anthrax spores during a terrorist incident has the potential to quickly distribute concentrations that are infectious throughout the building.

  5. Modelling interplanetary CMEs using magnetohydrodynamic simulations

    Directory of Open Access Journals (Sweden)

    P. J. Cargill

    Full Text Available The dynamics of Interplanetary Coronal Mass Ejections (ICMEs are discussed from the viewpoint of numerical modelling. Hydrodynamic models are shown to give a good zero-order picture of the plasma properties of ICMEs, but they cannot model the important magnetic field effects. Results from MHD simulations are shown for a number of cases of interest. It is demonstrated that the strong interaction of the ICME with the solar wind leads to the ICME and solar wind velocities being close to each other at 1 AU, despite their having very different speeds near the Sun. It is also pointed out that this interaction leads to a distortion of the ICME geometry, making cylindrical symmetry a dubious assumption for the CME field at 1 AU. In the presence of a significant solar wind magnetic field, the magnetic fields of the ICME and solar wind can reconnect with each other, leading to an ICME that has solar wind-like field lines. This effect is especially important when an ICME with the right sense of rotation propagates down the heliospheric current sheet. It is also noted that a lack of knowledge of the coronal magnetic field makes such simulations of little use in space weather forecasts that require knowledge of the ICME magnetic field strength.

    Key words. Interplanetary physics (interplanetary magnetic fields Solar physics, astrophysics, and astronomy (flares and mass ejections Space plasma physics (numerical simulation studies

  6. Interactive Modelling and Simulation of Human Motion

    DEFF Research Database (Denmark)

    Engell-Nørregård, Morten Pol

    Dansk resumé Denne ph.d.-afhandling beskæftiger sig med modellering og simulation af menneskelig bevægelse. Emnerne i denne afhandling har mindst to ting til fælles. For det første beskæftiger de sig med menneskelig bevægelse. Selv om de udviklede modeller også kan benyttes til andre ting,er det...... menneskers led, der udviser både ikke-konveksitet og flere frihedsgrader • En generel og alsidig model for aktivering af bløde legemer. Modellen kan anvendes som et animations værktøj, men er lige så velegnet til simulering af menneskelige muskler, da den opfylder de grundlæggende fysiske principper...... primære fokus på at modellere den menneskelige krop. For det andet, beskæftiger de sig alle med simulering som et redskab til at syntetisere bevægelse og dermed skabe animationer. Dette er en vigtigt pointe, da det betyder, at vi ikke kun skaber værktøjer til animatorer, som de kan bruge til at lave sjove...

  7. WiBro Mobility Simulation Model

    Directory of Open Access Journals (Sweden)

    Junaid Qayyum

    2011-09-01

    Full Text Available WiBro, or Wireless Broadband, is the newest variety of mobile wireless broadband access. WiBro technology is being developed by the Korean Telecoms industry. It is based on the IEEE 802.16e (Mobile WiMax international standard. Korean based fixed-line operators KT, SK Telecom were the first to get the licenses by the South Korean government to provide WiBro Commercially. Samsung had a demonstration on WiBro Mobile Phones and Systems at the "APEC IT Exhibition 2006". WiBro is comprised of two phases namely WiBro Phase I and WiBro Phase II. Samsung Electronics has been extensively contributing to Koreas WiBro (Wireless Broadband initiative as well as the IEEE 802.16 standards. The WiBro is a specific subset of the 802.16 standards, specially focusing on supporting full mobility of wireless access systems with OFDMA PHY interface. In this work, we have developed a simulation model of the WiBro system consisting of a set of Base Stations and Mobile Subscriber Stations by using the OPNET Modeler. The simulation model has been utilized to evaluate effective MAC layer throughput, resource usage efficiency, QoS class differentiation, and system capacity and performance under various simulation scenarios.

  8. Progress in Modeling and Simulation of Batteries

    Energy Technology Data Exchange (ETDEWEB)

    Turner, John A [ORNL

    2016-01-01

    Modeling and simulation of batteries, in conjunction with theory and experiment, are important research tools that offer opportunities for advancement of technologies that are critical to electric motors. The development of data from the application of these tools can provide the basis for managerial and technical decision-making. Together, these will continue to transform batteries for electric vehicles. This collection of nine papers presents the modeling and simulation of batteries and the continuing contribution being made to this impressive progress, including topics that cover: * Thermal behavior and characteristics * Battery management system design and analysis * Moderately high-fidelity 3D capabilities * Optimization Techniques and Durability As electric vehicles continue to gain interest from manufacturers and consumers alike, improvements in economy and affordability, as well as adoption of alternative fuel sources to meet government mandates are driving battery research and development. Progress in modeling and simulation will continue to contribute to battery improvements that deliver increased power, energy storage, and durability to further enhance the appeal of electric vehicles.

  9. Simulating an Optimizing Model of Currency Substitution Simulating an Optimizing Model of Currency Substitution

    Directory of Open Access Journals (Sweden)

    Leonardo Leiderman

    1992-03-01

    Full Text Available Simulating an Optimizing Model of Currency Substitution This paper reports simulations based on the parameter estimates of an intertemporal model of currency substitution under nonexpected utility obtained by Bufman and Leiderman (1991. Here we first study the quantitative impact of changes in the degree of dollarization and in the elasticity of currency substitution on government seigniorage. Then, when examine whether the model can account for the comovement of consumption growth and assets' returnr after the 1985 stabilization program, and in particular for the consumption boom of 1986-87. The results are generally encouraging for future applications of optimizing models of currencysubstitution to policy and practical issues.

  10. Computer Models Simulate Fine Particle Dispersion

    Science.gov (United States)

    2010-01-01

    Through a NASA Seed Fund partnership with DEM Solutions Inc., of Lebanon, New Hampshire, scientists at Kennedy Space Center refined existing software to study the electrostatic phenomena of granular and bulk materials as they apply to planetary surfaces. The software, EDEM, allows users to import particles and obtain accurate representations of their shapes for modeling purposes, such as simulating bulk solids behavior, and was enhanced to be able to more accurately model fine, abrasive, cohesive particles. These new EDEM capabilities can be applied in many industries unrelated to space exploration and have been adopted by several prominent U.S. companies, including John Deere, Pfizer, and Procter & Gamble.

  11. Consolidation modelling for thermoplastic composites forming simulation

    Science.gov (United States)

    Xiong, H.; Rusanov, A.; Hamila, N.; Boisse, P.

    2016-10-01

    Pre-impregnated thermoplastic composites are widely used in the aerospace industry for their excellent mechanical properties, Thermoforming thermoplastic prepregs is a fast manufacturing process, the automotive industry has shown increasing interest in this manufacturing processes, in which the reconsolidation is an essential stage. The model of intimate contact is investigated as the consolidation model, compression experiments have been launched to identify the material parameters, several numerical tests show the influents of the temperature and pressure applied during processing. Finally, a new solid-shell prismatic element has been presented for the simulation of consolidation step in the thermoplastic composites forming process.

  12. Modeling and simulation of reactive flows

    CERN Document Server

    Bortoli, De AL; Pereira, Felipe

    2015-01-01

    Modelling and Simulation of Reactive Flows presents information on modeling and how to numerically solve reactive flows. The book offers a distinctive approach that combines diffusion flames and geochemical flow problems, providing users with a comprehensive resource that bridges the gap for scientists, engineers, and the industry. Specifically, the book looks at the basic concepts related to reaction rates, chemical kinetics, and the development of reduced kinetic mechanisms. It considers the most common methods used in practical situations, along with equations for reactive flows, and va

  13. Solar Electric Bicycle Body Modeling and Simulation

    Directory of Open Access Journals (Sweden)

    Zhikun Wang

    2013-10-01

    Full Text Available A new solar electric bicycle design and study were carried out on in this paper. Application of CAD technology to establish three-dimension geometric model, using the kinetic analysis on the frame and other parts for numerical simulation and static strength analysis for the vehicle model design, virtual assembly, complete frame dynamics analysis and vibration analysis, with considering other factors, first on the frame structure improvement, second on security of design calculation analysis and comparison, finally get the ideal body design.

  14. Histone acetylation dependent energy landscapes in tri-nucleosome revealed by residue-resolved molecular simulations

    Science.gov (United States)

    Chang, Le; Takada, Shoji

    2016-01-01

    Histone tail acetylation is a key epigenetic marker that tends to open chromatin folding and activate transcription. Despite intensive studies, precise roles of individual lysine acetylation in chromatin folding have only been poorly understood. Here, we revealed structural dynamics of tri-nucleosomes with several histone tail acetylation states and analyzed histone tail interactions with DNA by performing molecular simulations at an unprecedentedly high resolution. We found versatile acetylation-dependent landscapes of tri-nucleosome. The H4 and H2A tail acetylation reduced the contact between the first and third nucleosomes mediated by the histone tails. The H3 tail acetylation reduced its interaction with neighboring linker DNAs resulting in increase of the distance between consecutive nucleosomes. Notably, two copies of the same histone in a single nucleosome have markedly asymmetric interactions with DNAs, suggesting specific pattern of nucleosome docking albeit high inherent flexibility. Estimated transcription factor accessibility was significantly high for the H4 tail acetylated structures. PMID:27698366

  15. Viscoelastic flow simulations in model porous media

    Science.gov (United States)

    De, S.; Kuipers, J. A. M.; Peters, E. A. J. F.; Padding, J. T.

    2017-05-01

    We investigate the flow of unsteadfy three-dimensional viscoelastic fluid through an array of symmetric and asymmetric sets of cylinders constituting a model porous medium. The simulations are performed using a finite-volume methodology with a staggered grid. The solid-fluid interfaces of the porous structure are modeled using a second-order immersed boundary method [S. De et al., J. Non-Newtonian Fluid Mech. 232, 67 (2016), 10.1016/j.jnnfm.2016.04.002]. A finitely extensible nonlinear elastic constitutive model with Peterlin closure is used to model the viscoelastic part. By means of periodic boundary conditions, we model the flow behavior for a Newtonian as well as a viscoelastic fluid through successive contractions and expansions. We observe the presence of counterrotating vortices in the dead ends of our geometry. The simulations provide detailed insight into how flow structure, viscoelastic stresses, and viscoelastic work change with increasing Deborah number De. We observe completely different flow structures and different distributions of the viscoelastic work at high De in the symmetric and asymmetric configurations, even though they have the exact same porosity. Moreover, we find that even for the symmetric contraction-expansion flow, most energy dissipation is occurring in shear-dominated regions of the flow domain, not in extensional-flow-dominated regions.

  16. Combining stated and revealed choice research to simulate the neighbor effect: The case of hybrid-electric vehicles

    Energy Technology Data Exchange (ETDEWEB)

    Axsen, Jonn [Institute of Transportation Studies, Univ. of California at Davis, 2028 Academic Surge, One Shields Avenue, Davis, CA 95616 (United States); Mountain, Dean C. [DeGroote School of Business, McMaster Univ., 1280 Main Street West, Hamilton, ON L8S 4M4 (Canada); Jaccard, Mark [School of Resource and Environmental Management, Simon Fraser Univ., 8888 Univ. Drive, Burnaby, BC V5A 1S6 (Canada)

    2009-08-15

    According to intuition and theories of diffusion, consumer preferences develop along with technological change. However, most economic models designed for policy simulation unrealistically assume static preferences. To improve the behavioral realism of an energy-economy policy model, this study investigates the ''neighbor effect'', where a new technology becomes more desirable as its adoption becomes more widespread in the market. We measure this effect as a change in aggregated willingness to pay under different levels of technology penetration. Focusing on hybrid-electric vehicles (HEVs), an online survey experiment collected stated preference (SP) data from 535 Canadian and 408 Californian vehicle owners under different hypothetical market conditions. Revealed preference (RP) data was collected from the same respondents by eliciting the year, make and model of recent vehicle purchases from regions with different degrees of HEV popularity: Canada with 0.17% new market share, and California with 3.0% new market share. We compare choice models estimated from RP data only with three joint SP-RP estimation techniques, each assigning a different weight to the influence of SP and RP data in coefficient estimates. Statistically, models allowing more RP influence outperform SP influenced models. However, results suggest that because the RP data in this study is afflicted by multicollinearity, techniques that allow more SP influence in the beta estimates while maintaining RP data for calibrating vehicle class constraints produce more realistic estimates of willingness to pay. Furthermore, SP influenced coefficient estimates also translate to more realistic behavioral parameters for CIMS, allowing more sensitivity to policy simulations. (author)

  17. LISP based simulation generators for modeling complex space processes

    Science.gov (United States)

    Tseng, Fan T.; Schroer, Bernard J.; Dwan, Wen-Shing

    1987-01-01

    The development of a simulation assistant for modeling discrete event processes is presented. Included are an overview of the system, a description of the simulation generators, and a sample process generated using the simulation assistant.

  18. Biomedical Simulation Models of Human Auditory Processes

    Science.gov (United States)

    Bicak, Mehmet M. A.

    2012-01-01

    Detailed acoustic engineering models that explore noise propagation mechanisms associated with noise attenuation and transmission paths created when using hearing protectors such as earplugs and headsets in high noise environments. Biomedical finite element (FE) models are developed based on volume Computed Tomography scan data which provides explicit external ear, ear canal, middle ear ossicular bones and cochlea geometry. Results from these studies have enabled a greater understanding of hearing protector to flesh dynamics as well as prioritizing noise propagation mechanisms. Prioritization of noise mechanisms can form an essential framework for exploration of new design principles and methods in both earplug and earcup applications. These models are currently being used in development of a novel hearing protection evaluation system that can provide experimentally correlated psychoacoustic noise attenuation. Moreover, these FE models can be used to simulate the effects of blast related impulse noise on human auditory mechanisms and brain tissue.

  19. Simulation Model of Brushless Excitation System

    Directory of Open Access Journals (Sweden)

    Ahmed N.A.  Alla

    2007-01-01

    Full Text Available Excitation system is key element in the dynamic performance of electric power systems, accurate excitation models are of great importance in simulating and investigating the power system transient phenomena. Parameter identification of the Brushless excitation system was presented. First a block diagram for the EXS parameter was proposed based on the documents and maps in the power station. To identify the parameters of this model, a test procedure to obtain step response, was presented. Using the Genetic Algorithm with the Matlab-software it was possible to identify all the necessary parameters of the model. Using the same measured input signals the response from the standard model showed nearly the same behavior as the excitation system.

  20. Modeling and simulation of direct contact evaporators

    Directory of Open Access Journals (Sweden)

    F.B. Campos

    2001-09-01

    Full Text Available A dynamic model of a direct contact evaporator was developed and coupled to a recently developed superheated bubble model. The latter model takes into account heat and mass transfer during the bubble formation and ascension stages and is able to predict gas holdup in nonisothermal systems. The results of the coupled model, which does not have any adjustable parameter, were compared with experimental data. The transient behavior of the liquid-phase temperature and the vaporization rate under quasi-steady-state conditions were in very good agreement with experimental data. The transient behavior of liquid height was only reasonably simulated. In order to explain this partial disagreement, some possible causes were analyzed.

  1. Efficient Turbulence Modeling for CFD Wake Simulations

    DEFF Research Database (Denmark)

    van der Laan, Paul

    , that can accurately and efficiently simulate wind turbine wakes. The linear k-ε eddy viscosity model (EVM) is a popular turbulence model in RANS; however, it underpredicts the velocity wake deficit and cannot predict the anisotropic Reynolds-stresses in the wake. In the current work, nonlinear eddy...... viscosity models (NLEVM) are applied to wind turbine wakes. NLEVMs can model anisotropic turbulence through a nonlinear stress-strain relation, and they can improve the velocity deficit by the use of a variable eddy viscosity coefficient, that delays the wake recovery. Unfortunately, all tested NLEVMs show...... numerically unstable behavior for fine grids, which inhibits a grid dependency study for numerical verification. Therefore, a simpler EVM is proposed, labeled as the k-ε - fp EVM, that has a linear stress-strain relation, but still has a variable eddy viscosity coefficient. The k-ε - fp EVM is numerically...

  2. Integrating Visualizations into Modeling NEST Simulations.

    Science.gov (United States)

    Nowke, Christian; Zielasko, Daniel; Weyers, Benjamin; Peyser, Alexander; Hentschel, Bernd; Kuhlen, Torsten W

    2015-01-01

    Modeling large-scale spiking neural networks showing realistic biological behavior in their dynamics is a complex and tedious task. Since these networks consist of millions of interconnected neurons, their simulation produces an immense amount of data. In recent years it has become possible to simulate even larger networks. However, solutions to assist researchers in understanding the simulation's complex emergent behavior by means of visualization are still lacking. While developing tools to partially fill this gap, we encountered the challenge to integrate these tools easily into the neuroscientists' daily workflow. To understand what makes this so challenging, we looked into the workflows of our collaborators and analyzed how they use the visualizations to solve their daily problems. We identified two major issues: first, the analysis process can rapidly change focus which requires to switch the visualization tool that assists in the current problem domain. Second, because of the heterogeneous data that results from simulations, researchers want to relate data to investigate these effectively. Since a monolithic application model, processing and visualizing all data modalities and reflecting all combinations of possible workflows in a holistic way, is most likely impossible to develop and to maintain, a software architecture that offers specialized visualization tools that run simultaneously and can be linked together to reflect the current workflow, is a more feasible approach. To this end, we have developed a software architecture that allows neuroscientists to integrate visualization tools more closely into the modeling tasks. In addition, it forms the basis for semantic linking of different visualizations to reflect the current workflow. In this paper, we present this architecture and substantiate the usefulness of our approach by common use cases we encountered in our collaborative work.

  3. Integrating Visualizations into Modeling NEST Simulations

    Directory of Open Access Journals (Sweden)

    Christian eNowke

    2015-12-01

    Full Text Available Modeling large-scale spiking neural networks showing realistic biological behavior in their dynamics is a complex and tedious task. Since these networks consist of millions of interconnected neurons, their simulation produces an immense amount of data. In recent years it has become possible to simulate even larger networks. However, solutions to assist researchers in understanding the simulation's complex emergent behavior by means of visualization are still lacking. While developing tools to partially fill this gap, we encountered the challenge to integrate these tools easily into the neuroscientists' daily workflow. To understand what makes this so challenging, we looked into the workflows of our collaborators and analyzed how they use the visualizations to solve their daily problems. We identified two major issues: first, the analysis process can rapidly change focus which requires to switch the visualization tool that assists in the current problem domain. Second, because of the heterogeneous data that results from simulations, researchers want to relate data to investigate these effectively. Since a monolithic application model, processing and visualizing all data modalities and reflecting all combinations of possible workflows in a holistic way, is most likely impossible to develop and to maintain, a software architecture that offers specialized visualization tools that run simultaneously and can be linked together to reflect the current workflow, is a more feasible approach. To this end, we have developed a software architecture that allows neuroscientists to integrate visualization tools more closely into the modeling tasks. In addition, it forms the basis for semantic linking of different visualizations to reflect the current workflow. In this paper, we present this architecture and substantiate the usefulness of our approach by common use cases we encountered in our collaborative work.

  4. Unbiased simulations reveal the inward-facing conformation of the human serotonin transporter and Na+ ion release

    DEFF Research Database (Denmark)

    Koldsø, Heidi; Noer, Pernille Rimmer; Grouleff, Julie;

    2011-01-01

    . The simulations reveal a transition of hSERT from an outward-facing occluded conformation to an inward-facing conformation in a one-substrate-bound state. Simulations with a second substrate in the proposed symport effector site did not lead to conformational changes associated with translocation. The central...

  5. Simulation modeling for microbial risk assessment.

    Science.gov (United States)

    Cassin, M H; Paoli, G M; Lammerding, A M

    1998-11-01

    Quantitative microbial risk assessment implies an estimation of the probability and impact of adverse health outcomes due to microbial hazards. In the case of food safety, the probability of human illness is a complex function of the variability of many parameters that influence the microbial environment, from the production to the consumption of a food. The analytical integration required to estimate the probability of foodborne illness is intractable in all but the simplest of models. Monte Carlo simulation is an alternative to computing analytical solutions. In some cases, a risk assessment may be commissioned to serve a larger purpose than simply the estimation of risk. A Monte Carlo simulation can provide insights into complex processes that are invaluable, and otherwise unavailable, to those charged with the task of risk management. Using examples from a farm-to-fork model of the fate of Escherichia coli O157:H7 in ground beef hamburgers, this paper describes specifically how such goals as research prioritization, risk-based characterization of control points, and risk-based comparison of intervention strategies can be objectively achieved using Monte Carlo simulation.

  6. Application of simulation models for the optimization of business processes

    Science.gov (United States)

    Jašek, Roman; Sedláček, Michal; Chramcov, Bronislav; Dvořák, Jiří

    2016-06-01

    The paper deals with the applications of modeling and simulation tools in the optimization of business processes, especially in solving an optimization of signal flow in security company. As a modeling tool was selected Simul8 software that is used to process modeling based on discrete event simulation and which enables the creation of a visual model of production and distribution processes.

  7. Raytracing simulations of coupled dark energy models

    CERN Document Server

    Pace, Francesco; Moscardini, Lauro; Bacon, David; Crittenden, Robert

    2014-01-01

    Dark matter and dark energy are usually assumed to be independent, coupling only gravitationally. An extension to this simple picture is to model dark energy as a scalar field which is directly coupled to the cold dark matter fluid. Such a non-trivial coupling in the dark sector leads to a fifth force and a time-dependent dark matter particle mass. In this work we examine the impact that dark energy-dark matter couplings have on weak lensing statistics by constructing realistic simulated weak-lensing maps using raytracing techniques through a suite of N-body cosmological simulations. We construct maps for an array of different lensing quantities, covering a range of scales from a few arcminutes to several degrees. The concordance $\\Lambda$CDM model is compared to different coupled dark energy models, described either by an exponential scalar field potential (standard coupled dark energy scenario) or by a SUGRA potential (bouncing model). We analyse several statistical quantities, in particular the power spect...

  8. Closed loop models for analyzing engineering requirements for simulators

    Science.gov (United States)

    Baron, S.; Muralidharan, R.; Kleinman, D.

    1980-01-01

    A closed loop analytic model, incorporating a model for the human pilot, (namely, the optimal control model) that would allow certain simulation design tradeoffs to be evaluated quantitatively was developed. This model was applied to a realistic flight control problem. The resulting model is used to analyze both overall simulation effects and the effects of individual elements. The results show that, as compared to an ideal continuous simulation, the discrete simulation can result in significant performance and/or workload penalties.

  9. Induction generator models in dynamic simulation tools

    DEFF Research Database (Denmark)

    Knudsen, Hans; Akhmatov, Vladislav

    1999-01-01

    For AC network with large amount of induction generators (windmills) the paper demonstrates a significant discrepancy in the simulated voltage recovery after fault in weak networks when comparing dynamic and transient stability descriptions and the reasons of discrepancies are explained. It is fo......For AC network with large amount of induction generators (windmills) the paper demonstrates a significant discrepancy in the simulated voltage recovery after fault in weak networks when comparing dynamic and transient stability descriptions and the reasons of discrepancies are explained....... It is found to be possible to include a transient model in dynamic stability tools and, then, obtain correct results also in dynamic tools. The representation of the rotating system influences on the voltage recovery shape which is an important observation in case of windmills, where a heavy mill is connected...

  10. Galaxy alignments: Theory, modelling and simulations

    CERN Document Server

    Kiessling, Alina; Joachimi, Benjamin; Kirk, Donnacha; Kitching, Thomas D; Leonard, Adrienne; Mandelbaum, Rachel; Schäfer, Björn Malte; Sifón, Cristóbal; Brown, Michael L; Rassat, Anais

    2015-01-01

    The shapes of galaxies are not randomly oriented on the sky. During the galaxy formation and evolution process, environment has a strong influence, as tidal gravitational fields in large-scale structure tend to align the shapes and angular momenta of nearby galaxies. Additionally, events such as galaxy mergers affect the relative alignments of galaxies throughout their history. These "intrinsic galaxy alignments" are known to exist, but are still poorly understood. This review will offer a pedagogical introduction to the current theories that describe intrinsic galaxy alignments, including the apparent difference in intrinsic alignment between early- and late-type galaxies and the latest efforts to model them analytically. It will then describe the ongoing efforts to simulate intrinsic alignments using both $N$-body and hydrodynamic simulations. Due to the relative youth of this field, there is still much to be done to understand intrinsic galaxy alignments and this review summarises the current state of the ...

  11. A Simulation Model for Component Commonality

    Institute of Scientific and Technical Information of China (English)

    ZHU Xiao-chi; ZHANG Zi-gang

    2002-01-01

    Component commonality has been cited as a powerful approach for manufacturers to cope with increased component proliferation and to control inventory costs. To fully realize its potential benefits, one needs a clear understanding of its impacts on the system. In this paper, the feasibility of using a simulation model to provide a systematic perspective for manufacturing firms to implement a commonality strategy is demonstrated. Alternative commonality strategies including the stage of employing commonality and the allocation policies are simulated. Several interesting results on effects of commonality, allocation policies,and optimal solutions are obtained. We then summarize qualitative insights and managerial implications into the component commonality design and implementation, and inventory management in a general multi-stage assembly system.

  12. Assumed PDF modeling in rocket combustor simulations

    Science.gov (United States)

    Lempke, M.; Gerlinger, P.; Aigner, M.

    2013-03-01

    In order to account for the interaction between turbulence and chemistry, a multivariate assumed PDF (Probability Density Function) approach is used to simulate a model rocket combustor with finite-rate chemistry. The reported test case is the PennState preburner combustor with a single shear coaxial injector. Experimental data for the wall heat flux is available for this configuration. Unsteady RANS (Reynolds-averaged Navier-Stokes) simulation results with and without the assumed PDF approach are analyzed and compared with the experimental data. Both calculations show a good agreement with the experimental wall heat flux data. Significant changes due to the utilization of the assumed PDF approach can be observed in the radicals, e. g., the OH mass fraction distribution, while the effect on the wall heat flux is insignificant.

  13. Cloud vertical distribution from radiosonde, remote sensing, and model simulations

    Science.gov (United States)

    Zhang, Jinqiang; Li, Zhanqing; Chen, Hongbin; Yoo, Hyelim; Cribb, Maureen

    2014-08-01

    Knowledge of cloud vertical structure is important for meteorological and climate studies due to the impact of clouds on both the Earth's radiation budget and atmospheric adiabatic heating. Yet it is among the most difficult quantities to observe. In this study, we develop a long-term (10 years) radiosonde-based cloud profile product over the Southern Great Plains and along with ground-based and space-borne remote sensing products, use it to evaluate cloud layer distributions simulated by the National Centers for Environmental Prediction global forecast system (GFS) model. The primary objective of this study is to identify advantages and limitations associated with different cloud layer detection methods and model simulations. Cloud occurrence frequencies are evaluated on monthly, annual, and seasonal scales. Cloud vertical distributions from all datasets are bimodal with a lower peak located in the boundary layer and an upper peak located in the high troposphere. In general, radiosonde low-level cloud retrievals bear close resemblance to the ground-based remote sensing product in terms of their variability and gross spatial patterns. The ground-based remote sensing approach tends to underestimate high clouds relative to the radiosonde-based estimation and satellite products which tend to underestimate low clouds. As such, caution must be exercised to use any single product. Overall, the GFS model simulates less low-level and more high-level clouds than observations. In terms of total cloud cover, GFS model simulations agree fairly well with the ground-based remote sensing product. A large wet bias is revealed in GFS-simulated relative humidity fields at high levels in the atmosphere.

  14. Modelling and Simulation of Gas Engines Using Aspen HYSYS

    Directory of Open Access Journals (Sweden)

    M. C. Ekwonu

    2013-12-01

    Full Text Available In this paper gas engine model was developed in Aspen HYSYS V7.3 and validated with Waukesha 16V275GL+ gas engine. Fuel flexibility, fuel types and part load performance of the gas engine were investigated. The design variability revealed that the gas engine can operate on poor fuel with low lower heating value (LHV such as landfill gas, sewage gas and biogas with biogas offering potential integration with bottoming cycles when compared to natural gas. The result of the gas engine simulation gave an efficiency 40.7% and power output of 3592kW.

  15. Traffic flow dynamics data, models and simulation

    CERN Document Server

    Treiber, Martin

    2013-01-01

    This textbook provides a comprehensive and instructive coverage of vehicular traffic flow dynamics and modeling. It makes this fascinating interdisciplinary topic, which to date was only documented in parts by specialized monographs, accessible to a broad readership. Numerous figures and problems with solutions help the reader to quickly understand and practice the presented concepts. This book is targeted at students of physics and traffic engineering and, more generally, also at students and professionals in computer science, mathematics, and interdisciplinary topics. It also offers material for project work in programming and simulation at college and university level. The main part, after presenting different categories of traffic data, is devoted to a mathematical description of the dynamics of traffic flow, covering macroscopic models which describe traffic in terms of density, as well as microscopic many-particle models in which each particle corresponds to a vehicle and its driver. Focus chapters on ...

  16. Biomechanics trends in modeling and simulation

    CERN Document Server

    Ogden, Ray

    2017-01-01

    The book presents a state-of-the-art overview of biomechanical and mechanobiological modeling and simulation of soft biological tissues. Seven well-known scientists working in that particular field discuss topics such as biomolecules, networks and cells as well as failure, multi-scale, agent-based, bio-chemo-mechanical and finite element models appropriate for computational analysis. Applications include arteries, the heart, vascular stents and valve implants as well as adipose, brain, collagenous and engineered tissues. The mechanics of the whole cell and sub-cellular components as well as the extracellular matrix structure and mechanotransduction are described. In particular, the formation and remodeling of stress fibers, cytoskeletal contractility, cell adhesion and the mechanical regulation of fibroblast migration in healing myocardial infarcts are discussed. The essential ingredients of continuum mechanics are provided. Constitutive models of fiber-reinforced materials with an emphasis on arterial walls ...

  17. Hierarchical Boltzmann simulations and model error estimation

    Science.gov (United States)

    Torrilhon, Manuel; Sarna, Neeraj

    2017-08-01

    A hierarchical simulation approach for Boltzmann's equation should provide a single numerical framework in which a coarse representation can be used to compute gas flows as accurately and efficiently as in computational fluid dynamics, but a subsequent refinement allows to successively improve the result to the complete Boltzmann result. We use Hermite discretization, or moment equations, for the steady linearized Boltzmann equation for a proof-of-concept of such a framework. All representations of the hierarchy are rotationally invariant and the numerical method is formulated on fully unstructured triangular and quadrilateral meshes using a implicit discontinuous Galerkin formulation. We demonstrate the performance of the numerical method on model problems which in particular highlights the relevance of stability of boundary conditions on curved domains. The hierarchical nature of the method allows also to provide model error estimates by comparing subsequent representations. We present various model errors for a flow through a curved channel with obstacles.

  18. Modelling and Simulation for Major Incidents

    Directory of Open Access Journals (Sweden)

    Eleonora Pacciani

    2015-11-01

    Full Text Available In recent years, there has been a rise in Major Incidents with big impact on the citizens health and the society. Without the possibility of conducting live experiments when it comes to physical and/or toxic trauma, only an accurate in silico reconstruction allows us to identify organizational solutions with the best possible chance of success, in correlation with the limitations on available resources (e.g. medical team, first responders, treatments, transports, and hospitals availability and with the variability of the characteristic of event (e.g. type of incident, severity of the event and type of lesions. Utilizing modelling and simulation techniques, a simplified mathematical model of physiological evolution for patients involved in physical and toxic trauma incident scenarios has been developed and implemented. The model formalizes the dynamics, operating standards and practices of medical response and the main emergency service in the chain of emergency management during a Major Incident.

  19. Vertical eddy heat fluxes from model simulations

    Science.gov (United States)

    Stone, Peter H.; Yao, Mao-Sung

    1991-01-01

    Vertical eddy fluxes of heat are calculated from simulations with a variety of climate models, ranging from three-dimensional GCMs to a one-dimensional radiative-convective model. The models' total eddy flux in the lower troposphere is found to agree well with Hantel's analysis from observations, but in the mid and upper troposphere the models' values are systematically 30 percent to 50 percent smaller than Hantel's. The models nevertheless give very good results for the global temperature profile, and the reason for the discrepancy is unclear. The model results show that the manner in which the vertical eddy flux is carried is very sensitive to the parameterization of moist convection. When a moist adiabatic adjustment scheme with a critical value for the relative humidity of 100 percent is used, the vertical transports by large-scale eddies and small-scale convection on a global basis are equal: but when a penetrative convection scheme is used, the large-scale flux on a global basis is only about one-fifth to one-fourth the small-scale flux. Comparison of the model results with observations indicates that the results with the latter scheme are more realistic. However, even in this case, in mid and high latitudes the large and small-scale vertical eddy fluxes of heat are comparable in magnitude above the planetary boundary layer.

  20. Heinrich events modeled in transient glacial simulations

    Science.gov (United States)

    Ziemen, Florian; Kapsch, Marie; Mikolajewicz, Uwe

    2017-04-01

    Heinrich events are among the most prominent events of climate variability recorded in proxies across the northern hemisphere. They are the archetype of ice sheet — climate interactions on millennial time scales. Nevertheless, the exact mechanisms that cause Heinrich events are still under debate, and their climatic consequences are far from being fully understood. We address open questions by studying Heinrich events in a coupled ice sheet model (ISM) atmosphere-ocean-vegetation general circulation model (AOVGCM) framework, where this variability occurs as part of the model generated internal variability. The framework consists of a northern hemisphere setup of the modified Parallel Ice Sheet Model (mPISM) coupled to the global AOVGCM ECHAM5/MPIOM/LPJ. The simulations were performed fully coupled and with transient orbital and greenhouse gas forcing. They span from several millennia before the last glacial maximum into the deglaciation. To make these long simulations feasible, the atmosphere is accelerated by a factor of 10 relative to the other model components using a periodical-synchronous coupling technique. To disentangle effects of the Heinrich events and the deglaciation, we focus on the events occurring before the deglaciation. The modeled Heinrich events show a peak ice discharge of about 0.05 Sv and raise the sea level by 2.3 m on average. The resulting surface water freshening reduces the Atlantic meridional overturning circulation and ocean heat release. The reduction in ocean heat release causes a sub-surface warming and decreases the air temperature and precipitation regionally and downstream into Eurasia. The surface elevation decrease of the ice sheet enhances moisture transport onto the ice sheet and thus increases precipitation over the Hudson Bay area, thereby accelerating the recovery after an event.

  1. Monte Carlo simulations of protein amyloid formation reveal origin of sigmoidal aggregation kinetics.

    Science.gov (United States)

    Linse, Björn; Linse, Sara

    2011-07-01

    Severe conditions and lack of cure for many amyloid diseases make it highly desired to understand the underlying principles of formation of fibrillar aggregates (amyloid). Here, amyloid formation from peptides was studied using Monte Carlo simulations. Systems of 20, 50, 100, 200 or 500 hexapeptides were simulated. Association kinetics were modeled equal for fibrillar and other (inter- and intra-peptide) contacts and assumed to be faster the lower the effective contact order, which represents the distance in space. Attempts to form contacts were thus accepted with higher probability the lower the effective contact order, whereby formation of new contacts next to preexisting ones is favored by shorter physical separation. Kinetic discrimination was invoked by using two different life-times for formed contacts. Contacts within amyloid fibrils were assumed to have on average longer life-time than other contacts. We find that the model produces fibrillation kinetics with a distinct lag phase, and that the fibrillar contacts need to dissociate on average 5-20 times slower than all other contacts for the fibrillar structure to dominate at equilibrium. Analysis of the species distribution along the aggregation process shows that no other intermediate is ever more populated than the dimer. Instead of a single nucleation event there is a concomitant increase in average aggregate size over the whole system, and the occurrence of multiple parallel processes makes the process more reproducible the larger the simulated system. The sigmoidal shape of the aggregation curves arises from cooperativity among multiple interactions within each pair of peptides in a fibril. A governing factor is the increasing probability as the aggregation process proceeds of neighboring reinforcing contacts. The results explain the very strong bias towards cross β-sheet fibrils in which the possibilities for cooperativity among interactions involving neighboring residues and the repetitive use of

  2. Modeling and Simulation. III. Simulation of a Model for Development of Visual Cortical Specificity.

    Science.gov (United States)

    1986-12-15

    of parameter values. Experiment, model, and simulation 5’ The simulations we consider mimic, in form, classic deprivation experiments. Kittens are...second paper of the series (ref. 8) reviews the results of numerous experiments on the neuronal development of kitten visual cortex. We have...restricted to a very limited range of oriented contours (see citations in ref. 8). Kittens were raised, for example, viewing only horizontal or only vertical

  3. An Agent-Based Monetary Production Simulation Model

    DEFF Research Database (Denmark)

    Bruun, Charlotte

    2006-01-01

    An Agent-Based Simulation Model Programmed in Objective Borland Pascal. Program and source code is downloadable......An Agent-Based Simulation Model Programmed in Objective Borland Pascal. Program and source code is downloadable...

  4. An Agent-Based Monetary Production Simulation Model

    DEFF Research Database (Denmark)

    Bruun, Charlotte

    2006-01-01

    An Agent-Based Simulation Model Programmed in Objective Borland Pascal. Program and source code is downloadable......An Agent-Based Simulation Model Programmed in Objective Borland Pascal. Program and source code is downloadable...

  5. The simulation model of planar electrochemical transducer

    Science.gov (United States)

    Zhevnenko, D. A.; Vergeles, S. S.; Krishtop, T. V.; Tereshonok, D. V.; Gornev, E. S.; Krishtop, V. G.

    2016-12-01

    Planar electrochemical systems are very perspective to build modern motion and pressure sensors. Planar microelectronic technology is successfully used for electrochemical transducer of motion parameters. These systems are characterized by an exceptionally high sensitivity towards mechanic exposure due to high rate of conversion of the mechanic signal to electric current. In this work, we have developed a mathematical model of this planar electrochemical system, which detects the mechanical signals. We simulate the processes of mass and charge transfer in planar electrochemical transducer and calculated its transfer function with different geometrical parameters of the system.

  6. Agent-based modeling and simulation

    CERN Document Server

    Taylor, Simon

    2014-01-01

    Operational Research (OR) deals with the use of advanced analytical methods to support better decision-making. It is multidisciplinary with strong links to management science, decision science, computer science and many application areas such as engineering, manufacturing, commerce and healthcare. In the study of emergent behaviour in complex adaptive systems, Agent-based Modelling & Simulation (ABMS) is being used in many different domains such as healthcare, energy, evacuation, commerce, manufacturing and defense. This collection of articles presents a convenient introduction to ABMS with pa

  7. Petroleum reservoir data for testing simulation models

    Energy Technology Data Exchange (ETDEWEB)

    Lloyd, J.M.; Harrison, W.

    1980-09-01

    This report consists of reservoir pressure and production data for 25 petroleum reservoirs. Included are 5 data sets for single-phase (liquid) reservoirs, 1 data set for a single-phase (liquid) reservoir with pressure maintenance, 13 data sets for two-phase (liquid/gas) reservoirs and 6 for two-phase reservoirs with pressure maintenance. Also given are ancillary data for each reservoir that could be of value in the development and validation of simulation models. A bibliography is included that lists the publications from which the data were obtained.

  8. Schwinger model simulations with dynamical overlap fermions

    CERN Document Server

    Bietenholz, W; Volkholz, J

    2007-01-01

    We present simulation results for the 2-flavour Schwinger model with dynamical overlap fermions. In particular we apply the overlap hypercube operator at seven light fermion masses. In each case we collect sizable statistics in the topological sectors 0 and 1. Since the chiral condensate Sigma vanishes in the chiral limit, we observe densities for the microscopic Dirac spectrum, which have not been addressed yet by Random Matrix Theory (RMT). Nevertheless, by confronting the averages of the lowest eigenvalues in different topological sectors with chiral RMT in unitary ensemble we obtain -- for the very light fermion masses -- values for $\\Sigma$ that follow closely the analytical predictions in the continuum.

  9. Schwinger model simulations with dynamical overlap fermions

    Energy Technology Data Exchange (ETDEWEB)

    Bietenholz, W. [Deutsches Elektronen-Synchrotron (DESY), Zeuthen (Germany). John von Neumann-Inst. fuer Computing NIC; Shcheredin, S. [Bielefeld Univ. (Germany). Fakultaet fuer Physik; Volkholz, J. [Humboldt-Universitaet, Berlin (Germany). Inst. fuer Physik

    2007-11-15

    We present simulation results for the 2-flavour Schwinger model with dynamical overlap fermions. In particular we apply the overlap hypercube operator at seven light fermion masses. In each case we collect sizable statistics in the topological sectors 0 and 1. Since the chiral condensate {sigma} vanishes in the chiral limit, we observe densities for the microscopic Dirac spectrum, which have not been addressed yet by Random Matrix Theory (RMT). Nevertheless, by confronting the averages of the lowest eigenvalues in different topological sectors with chiral RMT in unitary ensemble we obtain - for the very light fermion masses - values for {sigma} that follow closely the analytical predictions in the continuum. (orig.)

  10. Induction generator models in dynamic simulation tools

    DEFF Research Database (Denmark)

    Knudsen, Hans; Akhmatov, Vladislav

    1999-01-01

    . It is found to be possible to include a transient model in dynamic stability tools and, then, obtain correct results also in dynamic tools. The representation of the rotating system influences on the voltage recovery shape which is an important observation in case of windmills, where a heavy mill is connected......For AC network with large amount of induction generators (windmills) the paper demonstrates a significant discrepancy in the simulated voltage recovery after fault in weak networks when comparing dynamic and transient stability descriptions and the reasons of discrepancies are explained...

  11. CASTOR detector Model, objectives and simulated performance

    CERN Document Server

    Angelis, Aris L S; Bartke, Jerzy; Bogolyubsky, M Yu; Chileev, K; Erine, S; Gladysz-Dziadus, E; Kharlov, Yu V; Kurepin, A B; Lobanov, M O; Maevskaya, A I; Mavromanolakis, G; Nicolis, N G; Panagiotou, A D; Sadovsky, S A; Wlodarczyk, Z

    2001-01-01

    We present a phenomenological model describing the formation and evolution of a Centauro fireball in the baryon-rich region in nucleus-nucleus interactions in the upper atmosphere and at the LHC. The small particle multiplicity and imbalance of electromagnetic and hadronic content characterizing a Centauro event and also the strongly penetrating particles (assumed to be strangelets) frequently accompanying them can be naturally explained. We describe the CASTOR calorimeter, a subdetector of the ALICE experiment dedicated to the search for Centauro in the very forward, baryon-rich region of central Pb+Pb collisions at the LHC. The basic characteristics and simulated performance of the calorimeter are presented. (22 refs).

  12. CASTOR detector. Model, objectives and simulated performance

    Energy Technology Data Exchange (ETDEWEB)

    Angelis, A. L. S.; Mavromanolakis, G.; Panagiotou, A. D. [University of Athens, Nuclear and Particle Physics Division, Athens (Greece); Aslanoglou, X.; Nicolis, N. [Ioannina Univ., Ioannina (Greece). Dept. of Physics; Bartke, J.; Gladysz-Dziadus, E. [Institute of Nuclear Physics, Cracow (Poland); Lobanov, M.; Erine, S.; Kharlov, Y.V.; Bogolyubsky, M.Y. [Institute for High Energy Physics, Protvino (Russian Federation); Kurepin, A.B.; Chileev, K. [Institute for Nuclear Research, Moscow (Russian Federation); Wlodarczyk, Z. [Pedagogical University, Institute of Physics, Kielce (Poland)

    2001-10-01

    It is presented a phenomenological model describing the formation and evolution of a Centauro fireball in the baryon-rich region in nucleus-nucleus interactions in the upper atmosphere and at the LHC. The small particle multiplicity and imbalance of electromagnetic and hadronic content characterizing a Centauro event and also the strongly penetrating particles (assumed to be strangelets) frequently accompanying them can be naturally explained. It is described the CASTOR calorimeter, a sub detector of the ALICE experiment dedicated to the search for Centauro in the very forward, baryon-rich region of central Pb+Pb collisions at the LHC. The basic characteristics and simulated performance of the calorimeter are presented.

  13. Modelling and simulations of controlled release fertilizer

    Science.gov (United States)

    Irfan, Sayed Ameenuddin; Razali, Radzuan; Shaari, Ku Zilati Ku; Mansor, Nurlidia

    2016-11-01

    The recent advancement in controlled release fertilizer has provided an alternative solution to the conventional urea, controlled release fertilizer has a good plant nutrient uptake they are environment friendly. To have an optimum plant intake of nutrients from controlled release fertilizer it is very essential to understand the release characteristics. A mathematical model is developed to predict the release characteristics from polymer coated granule. Numerical simulations are performed by varying the parameters radius of granule, soil water content and soil porosity to study their effect on fertilizer release. Understanding these parameters helps in the better design and improve the efficiency of controlled release fertilizer.

  14. Monte Carlo Simulation of River Meander Modelling

    Science.gov (United States)

    Posner, A. J.; Duan, J. G.

    2010-12-01

    This study first compares the first order analytical solutions for flow field by Ikeda et. al. (1981) and Johanesson and Parker (1989b). Ikeda et. al.’s (1981) linear bank erosion model was implemented to predict the rate of bank erosion in which the bank erosion coefficient is treated as a stochastic variable that varies with physical properties of the bank (e.g. cohesiveness, stratigraphy, vegetation density). The developed model was used to predict the evolution of meandering planforms. Then, the modeling results were analyzed and compared to the observed data. Since the migration of meandering channel consists of downstream translation, lateral expansion, and downstream or upstream rotations. Several measures are formulated in order to determine which of the resulting planform is closest to the experimental measured one. Results from the deterministic model highly depend on the calibrated erosion coefficient. Since field measurements are always limited, the stochastic model yielded more realistic predictions of meandering planform evolutions. Due to the random nature of bank erosion coefficient, the meandering planform evolution is a stochastic process that can only be accurately predicted by a stochastic model. Quasi-2D Ikeda (1989) flow solution with Monte Carlo Simulation of Bank Erosion Coefficient.

  15. Axisymmetric Vortex Simulations with Various Turbulence Models

    Directory of Open Access Journals (Sweden)

    Brian Howard Fiedler

    2010-10-01

    Full Text Available The CFD code FLUENTTM has been applied to a vortex within an updraft above a frictional lower boundary. The sensitivity of vortex intensity and structure to the choice of turbulent model is explored. A high Reynolds number of 108 is employed to make the investigation relevant to the atmospheric vortex known as a tornado. The simulations are axisymmetric and are integrated forward in time to equilibrium.  In a variety of turbulence models tested, the Reynolds Stress Model allows for the greatest intensification of the vortex, with the azimuthal wind speed near the surface being 2.4 times the speed of the updraft, consistent with the destructive nature of tornadoes.  The Standard k-e Model, which is simpler than the Reynolds Stress Model but still more detailed than what is commonly available in numerical weather prediction models, produces an azimuthal wind speed near the surface of at most 0.6 times the updraft speed.        

  16. Simulation model for port shunting yards

    Science.gov (United States)

    Rusca, A.; Popa, M.; Rosca, E.; Rosca, M.; Dragu, V.; Rusca, F.

    2016-08-01

    Sea ports are important nodes in the supply chain, joining two high capacity transport modes: rail and maritime transport. The huge cargo flows transiting port requires high capacity construction and installation such as berths, large capacity cranes, respectively shunting yards. However, the port shunting yards specificity raises several problems such as: limited access since these are terminus stations for rail network, the in-output of large transit flows of cargo relatively to the scarcity of the departure/arrival of a ship, as well as limited land availability for implementing solutions to serve these flows. It is necessary to identify technological solutions that lead to an answer to these problems. The paper proposed a simulation model developed with ARENA computer simulation software suitable for shunting yards which serve sea ports with access to the rail network. Are investigates the principal aspects of shunting yards and adequate measures to increase their transit capacity. The operation capacity for shunting yards sub-system is assessed taking in consideration the required operating standards and the measure of performance (e.g. waiting time for freight wagons, number of railway line in station, storage area, etc.) of the railway station are computed. The conclusion and results, drawn from simulation, help transports and logistics specialists to test the proposals for improving the port management.

  17. The mathematical model of a LUNG simulator

    Directory of Open Access Journals (Sweden)

    František Šolc

    2014-12-01

    Full Text Available The paper discusses the design, modelling, implementation and testing of a specific LUNG simulator,. The described research was performed as a part of the project AlveoPic – Advanced Lung Research for Veterinary Medicine of Particles for Inhalation. The simulator was designed to establish a combined study programme comprising Biomedical Engineering Sciences (FEEC BUT and Healthcare and Rehabilitation Technology (FH Technikum Wien. The simulator is supposed to be an advanced laboratory equipment which should enhance the standard of the existing research activities within the above-mentioned study programs to the required level. Thus, the proposed paper introduces significant technical equipment for the laboratory education of students at both FH Technikum Wien and the Faculty of Electrical Engineering and Communication, Brno University of Technology. The apparatuses described here will be also used to support cooperative research activities. In the given context, the authors specify certain technical solutions and parameters related to artificial lungs, present the electrical equipment of the system, and point out the results of the PC-based measurement and control.

  18. Three-dimensional conceptual model for service-oriented simulation

    Institute of Scientific and Technical Information of China (English)

    Wen-guang WANG; Wei-ping WANG; Justyna ZANDER; Yi-fan ZHU

    2009-01-01

    In this letter, we propose a novel three-dimensional conceptual model for an emerging service-oriented simulation paradigm. The model can be used as a guideline or an analytic means to find the potential and possible future directions of the current simulation frameworks, In particular, the model inspects the crossover between the disciplines of modeling and simulation,service-orientation, and software/systems engineering. Finally, two specific simulation frameworks are studied as examples.

  19. Three-dimensional conceptual model for service-oriented simulation

    CERN Document Server

    Wang, Wenguang; Zander, Justyna; Zhu, Yifan; 10.1631/jzus.A0920258

    2009-01-01

    In this letter, we propose a novel three-dimensional conceptual model for an emerging service-oriented simulation paradigm. The model can be used as a guideline or an analytic means to find the potential and possible future directions of the current simulation frameworks. In particular, the model inspects the crossover between the disciplines of modeling and simulation, service-orientation, and software/systems engineering. Finally, two specific simulation frameworks are studied as examples.

  20. Modelling of Yeast Mating Reveals Robustness Strategies for Cell-Cell Interactions.

    Directory of Open Access Journals (Sweden)

    Weitao Chen

    2016-07-01

    Full Text Available Mating of budding yeast cells is a model system for studying cell-cell interactions. Haploid yeast cells secrete mating pheromones that are sensed by the partner which responds by growing a mating projection toward the source. The two projections meet and fuse to form the diploid. Successful mating relies on precise coordination of dynamic extracellular signals, signaling pathways, and cell shape changes in a noisy background. It remains elusive how cells mate accurately and efficiently in a natural multi-cell environment. Here we present the first stochastic model of multiple mating cells whose morphologies are driven by pheromone gradients and intracellular signals. Our novel computational framework encompassed a moving boundary method for modeling both a-cells and α-cells and their cell shape changes, the extracellular diffusion of mating pheromones dynamically coupled with cell polarization, and both external and internal noise. Quantification of mating efficiency was developed and tested for different model parameters. Computer simulations revealed important robustness strategies for mating in the presence of noise. These strategies included the polarized secretion of pheromone, the presence of the α-factor protease Bar1, and the regulation of sensing sensitivity; all were consistent with data in the literature. In addition, we investigated mating discrimination, the ability of an a-cell to distinguish between α-cells either making or not making α-factor, and mating competition, in which multiple a-cells compete to mate with one α-cell. Our simulations were consistent with previous experimental results. Moreover, we performed a combination of simulations and experiments to estimate the diffusion rate of the pheromone a-factor. In summary, we constructed a framework for simulating yeast mating with multiple cells in a noisy environment, and used this framework to reproduce mating behaviors and to identify strategies for robust cell

  1. Revealing Surface Waters on an Antifreeze Protein by Fusion Protein Crystallography Combined with Molecular Dynamic Simulations.

    Science.gov (United States)

    Sun, Tianjun; Gauthier, Sherry Y; Campbell, Robert L; Davies, Peter L

    2015-10-01

    Antifreeze proteins (AFPs) adsorb to ice through an extensive, flat, relatively hydrophobic surface. It has been suggested that this ice-binding site (IBS) organizes surface waters into an ice-like clathrate arrangement that matches and fuses to the quasi-liquid layer on the ice surface. On cooling, these waters join the ice lattice and freeze the AFP to its ligand. Evidence for the generality of this binding mechanism is limited because AFPs tend to crystallize with their IBS as a preferred protein-protein contact surface, which displaces some bound waters. Type III AFP is a 7 kDa globular protein with an IBS made up two adjacent surfaces. In the crystal structure of the most active isoform (QAE1), the part of the IBS that docks to the primary prism plane of ice is partially exposed to solvent and has clathrate waters present that match this plane of ice. The adjacent IBS, which matches the pyramidal plane of ice, is involved in protein-protein crystal contacts with few surface waters. Here we have changed the protein-protein contacts in the ice-binding region by crystallizing a fusion of QAE1 to maltose-binding protein. In this 1.9 Å structure, the IBS that fits the pyramidal plane of ice is exposed to solvent. By combining crystallography data with MD simulations, the surface waters on both sides of the IBS were revealed and match well with the target ice planes. The waters on the pyramidal plane IBS were loosely constrained, which might explain why other isoforms of type III AFP that lack the prism plane IBS are less active than QAE1. The AFP fusion crystallization method can potentially be used to force the exposure to solvent of the IBS on other AFPs to reveal the locations of key surface waters.

  2. Early stages of carbonate mineralization revealed from molecular simulations: Implications for biomineral formation

    Science.gov (United States)

    Wallace, A. F.; DeYoreo, J.; Banfield, J. F.

    2011-12-01

    The carbonate mineral constituents of many biomineralized products, formed both in and ex vivo, grow by a multi-stage crystallization process that involves the nucleation and structural reorganization of transient amorphous phases. The existence of transient phases and cluster species has significant implications for carbonate nucleation and growth in natural and engineered environments, both modern and ancient. The structure of these intermediate phases remains elusive, as does the nature of the disorder to order transition, however, these process details may strongly influence the interpretation of elemental and isotopic climate proxy data obtained from authigenic and biogenic carbonates. While molecular simulations have been applied to certain aspects of crystal growth, studies of metal carbonate nucleation are strongly inhibited by the presence of kinetic traps that prevent adequate sampling of the potential landscape upon which the growing clusters reside within timescales accessible by simulation. This research addresses this challenge by marrying the recent Kawska-Zahn (KZ) approach to simulation of crystal nucleation and growth from solution with replica-exchange molecular dynamics (REMD) techniques. REMD has been used previously to enhance sampling of protein conformations that occupy energy wells that are separated by sizable thermodynamic and kinetic barriers, and is used here to probe the initial formation and onset of order within hydrated calcium and iron carbonate cluster species during nucleation. Results to date suggest that growing clusters initiate as short linear ion chains that evolve into two- and three-dimensional structures with continued growth. The planar structures exhibit an obvious 2d lattice, while establishment of a 3d lattice is hindered by incomplete ion desolvation. The formation of a dehydrated core consisting of a single carbonate ion is observed when the clusters are ~0.75 nm. At the same size a distorted, but discernible

  3. Global Solar Dynamo Models: Simulations and Predictions

    Indian Academy of Sciences (India)

    Mausumi Dikpati; Peter A. Gilman

    2008-03-01

    Flux-transport type solar dynamos have achieved considerable success in correctly simulating many solar cycle features, and are now being used for prediction of solar cycle timing and amplitude.We first define flux-transport dynamos and demonstrate how they work. The essential added ingredient in this class of models is meridional circulation, which governs the dynamo period and also plays a crucial role in determining the Sun’s memory about its past magnetic fields.We show that flux-transport dynamo models can explain many key features of solar cycles. Then we show that a predictive tool can be built from this class of dynamo that can be used to predict mean solar cycle features by assimilating magnetic field data from previous cycles.

  4. Design and Simulation of Toroidal Twister Model

    Institute of Scientific and Technical Information of China (English)

    TIAN Huifang; LIN Xizhen; ZENG Qinqin

    2006-01-01

    Toroidal composite vessel winded with fiber is a new kind of structural pressure vessels, which not only has high structure efficiency of compound materials pressure vessel, good security and so on, but also has special shape and the property of utilizing toroidal space, and the prospect of the application of toroidal composite vessel winded with fiber is extremely broad. By introducing parameters establishment of toroidal vessel and elaborating the principle of filament winding for toroidal vessel, the design model of filament winding machine for toroidal vessel has been introduced, and the design model has been dynamically simulated by the software of ADAMS, which will give more referrence for the design of real toroidal vessel twister.

  5. VISION: Verifiable Fuel Cycle Simulation Model

    Energy Technology Data Exchange (ETDEWEB)

    Jacob J. Jacobson; Abdellatif M. Yacout; Gretchen E. Matthern; Steven J. Piet; David E. Shropshire

    2009-04-01

    The nuclear fuel cycle is a very complex system that includes considerable dynamic complexity as well as detail complexity. In the nuclear power realm, there are experts and considerable research and development in nuclear fuel development, separations technology, reactor physics and waste management. What is lacking is an overall understanding of the entire nuclear fuel cycle and how the deployment of new fuel cycle technologies affects the overall performance of the fuel cycle. The Advanced Fuel Cycle Initiative’s systems analysis group is developing a dynamic simulation model, VISION, to capture the relationships, timing and delays in and among the fuel cycle components to help develop an understanding of how the overall fuel cycle works and can transition as technologies are changed. This paper is an overview of the philosophy and development strategy behind VISION. The paper includes some descriptions of the model and some examples of how to use VISION.

  6. Modeling and visual simulation of Microalgae photobioreactor

    Science.gov (United States)

    Zhao, Ming; Hou, Dapeng; Hu, Dawei

    Microalgae is a kind of nutritious and high photosynthetic efficiency autotrophic plant, which is widely distributed in the land and the sea. It can be extensively used in medicine, food, aerospace, biotechnology, environmental protection and other fields. Photobioreactor which is important equipment is mainly used to cultivate massive and high-density microalgae. In this paper, based on the mathematical model of microalgae which grew under different light intensity, three-dimensional visualization model was built and implemented in 3ds max, Virtools and some other three dimensional software. Microalgae is photosynthetic organism, it can efficiently produce oxygen and absorb carbon dioxide. The goal of the visual simulation is to display its change and impacting on oxygen and carbon dioxide intuitively. In this paper, different temperatures and light intensities were selected to control the photobioreactor, and dynamic change of microalgal biomass, Oxygen and carbon dioxide was observed with the aim of providing visualization support for microalgal and photobioreactor research.

  7. Revealing the Physics of Galactic Winds Through Massively-Parallel Hydrodynamics Simulations

    Science.gov (United States)

    Schneider, Evan Elizabeth

    This thesis documents the hydrodynamics code Cholla and a numerical study of multiphase galactic winds. Cholla is a massively-parallel, GPU-based code designed for astrophysical simulations that is freely available to the astrophysics community. A static-mesh Eulerian code, Cholla is ideally suited to carrying out massive simulations (> 20483 cells) that require very high resolution. The code incorporates state-of-the-art hydrodynamics algorithms including third-order spatial reconstruction, exact and linearized Riemann solvers, and unsplit integration algorithms that account for transverse fluxes on multidimensional grids. Operator-split radiative cooling and a dual-energy formalism for high mach number flows are also included. An extensive test suite demonstrates Cholla's superior ability to model shocks and discontinuities, while the GPU-native design makes the code extremely computationally efficient - speeds of 5-10 million cell updates per GPU-second are typical on current hardware for 3D simulations with all of the aforementioned physics. The latter half of this work comprises a comprehensive study of the mixing between a hot, supernova-driven wind and cooler clouds representative of those observed in multiphase galactic winds. Both adiabatic and radiatively-cooling clouds are investigated. The analytic theory of cloud-crushing is applied to the problem, and adiabatic turbulent clouds are found to be mixed with the hot wind on similar timescales as the classic spherical case (4-5 t cc) with an appropriate rescaling of the cloud-crushing time. Radiatively cooling clouds survive considerably longer, and the differences in evolution between turbulent and spherical clouds cannot be reconciled with a simple rescaling. The rapid incorporation of low-density material into the hot wind implies efficient mass-loading of hot phases of galactic winds. At the same time, the extreme compression of high-density cloud material leads to long-lived but slow-moving clumps

  8. A rainfall simulation model for agricultural development in Bangladesh

    Directory of Open Access Journals (Sweden)

    M. Sayedur Rahman

    2000-01-01

    Full Text Available A rainfall simulation model based on a first-order Markov chain has been developed to simulate the annual variation in rainfall amount that is observed in Bangladesh. The model has been tested in the Barind Tract of Bangladesh. Few significant differences were found between the actual and simulated seasonal, annual and average monthly. The distribution of number of success is asymptotic normal distribution. When actual and simulated daily rainfall data were used to drive a crop simulation model, there was no significant difference of rice yield response. The results suggest that the rainfall simulation model perform adequately for many applications.

  9. Toy Models for Galaxy Formation versus Simulations

    CERN Document Server

    Dekel, A; Tweed, D; Cacciato, M; Ceverino, D; Primack, J R

    2013-01-01

    We describe simple useful toy models for key processes of galaxy formation in its most active phase, at z > 1, and test the approximate expressions against the typical behaviour in a suite of high-resolution hydro-cosmological simulations of massive galaxies at z = 4-1. We address in particular the evolution of (a) the total mass inflow rate from the cosmic web into galactic haloes based on the EPS approximation, (b) the penetration of baryonic streams into the inner galaxy, (c) the disc size, (d) the implied steady-state gas content and star-formation rate (SFR) in the galaxy subject to mass conservation and a universal star-formation law, (e) the inflow rate within the disc to a central bulge and black hole as derived using energy conservation and self-regulated Q ~ 1 violent disc instability (VDI), and (f) the implied steady state in the disc and bulge. The toy models provide useful approximations for the behaviour of the simulated galaxies. We find that (a) the inflow rate is proportional to mass and to (...

  10. Modelling and simulation of multitechnological machine systems

    Energy Technology Data Exchange (ETDEWEB)

    Holopainen, T. (ed.) [VTT Manufacturing Technology, Espoo (Finland)

    2001-07-01

    The Smart Machines and Systems 2010 (SMART) technology programme 1997-2000 aimed at supporting the machine and electromechanical industries in incorporating the modern technology into their products and processes. The public research projects in this programme were planned to accumulate the latest research results and transfer them for the benefit of industrial product development. The major research topic in the SMART programme was called Modelling and Simulation of Multitechnological Mechatronic Systems. The behaviour of modern machine systems and subsystems addresses many different types of physical phenomena and their mutual interactions: mechanical behaviour of structures, electromagnetic effects, hydraulics, vibrations and acoustics etc. together with associated control systems and software. The actual research was carried out in three separate projects called Modelling and Simulation of Mechtronic Machine Systems for Product Development and Condition Monitoring Purposes (MASI), Virtual Testing of Hydraulically Driven Machines (HYSI), and Control of Low Frequency Vibration of a Mobile Machine (AKSUS). This publication contains the papers presented at the final seminar of these three research projects, held on November 30th at Otaniemi Espoo. (orig.)

  11. The gating mechanism of the human aquaporin 5 revealed by molecular dynamics simulations.

    Directory of Open Access Journals (Sweden)

    Lorant Janosi

    Full Text Available Aquaporins are protein channels located across the cell membrane with the role of conducting water or other small sugar alcohol molecules (aquaglyceroporins. The high-resolution X-ray structure of the human aquaporin 5 (HsAQP5 shows that HsAQP5, as all the other known aquaporins, exhibits tetrameric structure. By means of molecular dynamics simulations we analyzed the role of spontaneous fluctuations on the structural behavior of the human AQP5. We found that different conformations within the tetramer lead to a distribution of monomeric channel structures, which can be characterized as open or closed. The switch between the two states of a channel is a tap-like mechanism at the cytoplasmic end which regulates the water passage through the pore. The channel is closed by a translation of the His67 residue inside the pore. Moreover, water permeation rate calculations revealed that the selectivity filter, located at the other end of the channel, regulates the flow rate of water molecules when the channel is open, by locally modifying the orientation of His173. Furthermore, the calculated permeation rates of a fully open channel are in good agreement with the reported experimental value.

  12. A catalytic mechanism for cysteine N-terminal nucleophile hydrolases, as revealed by free energy simulations.

    Directory of Open Access Journals (Sweden)

    Alessio Lodola

    Full Text Available The N-terminal nucleophile (Ntn hydrolases are a superfamily of enzymes specialized in the hydrolytic cleavage of amide bonds. Even though several members of this family are emerging as innovative drug targets for cancer, inflammation, and pain, the processes through which they catalyze amide hydrolysis remains poorly understood. In particular, the catalytic reactions of cysteine Ntn-hydrolases have never been investigated from a mechanistic point of view. In the present study, we used free energy simulations in the quantum mechanics/molecular mechanics framework to determine the reaction mechanism of amide hydrolysis catalyzed by the prototypical cysteine Ntn-hydrolase, conjugated bile acid hydrolase (CBAH. The computational analyses, which were confirmed in water and using different CBAH mutants, revealed the existence of a chair-like transition state, which might be one of the specific features of the catalytic cycle of Ntn-hydrolases. Our results offer new insights on Ntn-mediated hydrolysis and suggest possible strategies for the creation of therapeutically useful inhibitors.

  13. The fundamental plane of star formation in galaxies revealed by the EAGLE hydrodynamical simulations

    CERN Document Server

    Lagos, Claudia del P; Schaye, Joop; Furlong, Michelle; Bower, Richard G; Schaller, Matthieu; Crain, Robert A; Trayford, James W; Matthee, Jorryt

    2015-01-01

    We investigate correlations between different physical properties of star-forming galaxies in the "Evolution and Assembly of GaLaxies and their Environments" (EAGLE) cosmological hydrodynamical simulation suite over the redshift range $0\\le z\\le 4.5$. A principal component analysis reveals that neutral gas fraction ($f_{\\rm gas, neutral}$), stellar mass ($M_{\\rm stellar}$) and star formation rate (SFR) account for most of the variance seen in the population, with galaxies tracing a two-dimensional, nearly flat, surface in the three-dimensional space of $f_{\\rm gas, neutral}-M_{\\rm stellar}-\\rm SFR$ with little scatter. The location of this plane varies little with redshift, whereas galaxies themselves move along the plane as their $f_{\\rm gas, neutral}$ and SFR drop with redshift. The positions of galaxies along the plane are highly correlated with gas metallicity. The metallicity can therefore be robustly predicted from $f_{\\rm gas, neutral}$, or from the $M_{\\rm stellar}$ and SFR. We argue that the appearan...

  14. The Fundamental Plane of star formation in galaxies revealed by the EAGLE hydrodynamical simulations

    Science.gov (United States)

    Lagos, Claudia del P.; Theuns, Tom; Schaye, Joop; Furlong, Michelle; Bower, Richard G.; Schaller, Matthieu; Crain, Robert A.; Trayford, James W.; Matthee, Jorryt

    2016-07-01

    We investigate correlations between different physical properties of star-forming galaxies in the `Evolution and Assembly of GaLaxies and their Environments' (EAGLE) cosmological hydrodynamical simulation suite over the redshift range 0 ≤ z ≤ 4.5. A principal component analysis reveals that neutral gas fraction (fgas,neutral), stellar mass (Mstellar) and star formation rate (SFR) account for most of the variance seen in the population, with galaxies tracing a two-dimensional, nearly flat, surface in the three-dimensional space of fgas, neutral-Mstellar-SFR with little scatter. The location of this plane varies little with redshift, whereas galaxies themselves move along the plane as their fgas, neutral and SFR drop with redshift. The positions of galaxies along the plane are highly correlated with gas metallicity. The metallicity can therefore be robustly predicted from fgas, neutral, or from the Mstellar and SFR. We argue that the appearance of this `Fundamental Plane of star formation' is a consequence of self-regulation, with the plane's curvature set by the dependence of the SFR on gas density and metallicity. We analyse a large compilation of observations spanning the redshift range 0 ≲ z ≲ 3, and find that such a plane is also present in the data. The properties of the observed Fundamental Plane of star formation are in good agreement with EAGLE's predictions.

  15. A Fault Evolution Model Including the Rupture Dynamic Simulation

    Science.gov (United States)

    Wu, Y.; Chen, X.

    2011-12-01

    We perform a preliminary numerical simulation of seismicity and stress evolution along a strike-slip fault in a 3D elastic half space. Following work of Ben-Zion (1996), the fault geometry is devised as a vertical plane which is about 70 km long and 17 km wide, comparable to the size of San Andreas Fault around Parkfield. The loading mechanism is described by "backslip" method. The fault failure is governed by a static/kinetic friction law, and induced stress transfer is calculated with Okada's static solution. In order to track the rupture propagation in detail, we allow induced stress to propagate through the medium at the shear wave velocity by introducing a distance-dependent time delay to responses to stress changes. Current simulation indicates small to moderate earthquakes following the Gutenberg-Richter law and quasi-periodical characteristic large earthquakes, which are consistent with previous work by others. Next we will consider introducing a more realistic friction law, namely, the laboratory-derived rate- and state- dependent law, which can simulate more realistic and complicated sliding behavior such as the stable and unstable slip, the aseismic sliding and the slip nucleation process. In addition, the long duration of aftershocks is expected to be reproduced due to this time-dependent friction law, which is not available in current seismicity simulation. The other difference from previous work is that we are trying to include the dynamic ruptures in this study. Most previous study on seismicity simulation is based on the static solution when dealing with failure induced stress changes. However, studies of numerical simulation of rupture dynamics have revealed lots of important details which are missing in the quasi-static/quasi- dynamic simulation. For example, dynamic simulations indicate that the slip on the ground surface becomes larger if the dynamic rupture process reaches the free surface. The concentration of stress on the propagating crack

  16. Simulating 2,368 temperate lakes reveals weak coherence in stratification phenology

    Science.gov (United States)

    Read, Jordan S.; Winslow, Luke A.; Hansen, Gretchen J. A.; Van Den Hoek, Jamon; Hanson, Paul C.; Bruce, Louise C; Markfort, Corey D.

    2014-01-01

    Changes in water temperatures resulting from climate warming can alter the structure and function of aquatic ecosystems. Lake-specific physical characteristics may play a role in mediating individual lake responses to climate. Past mechanistic studies of lake-climate interactions have simulated generic lake classes at large spatial scales or performed detailed analyses of small numbers of real lakes. Understanding the diversity of lake responses to climate change across landscapes requires a hybrid approach that couples site-specific lake characteristics with broad-scale environmental drivers. This study provides a substantial advancement in lake ecosystem modeling by combining open-source tools with freely available continental-scale data to mechanistically model daily temperatures for 2,368 Wisconsin lakes over three decades (1979-2011). The model accurately predicted observed surface layer temperatures (RMSE: 1.74°C) and the presence/absence of stratification (81.1% agreement). Among-lake coherence was strong for surface temperatures and weak for the timing of stratification, suggesting individual lake characteristics mediate some - but not all - ecologically relevant lake responses to climate.

  17. Boolean ErbB network reconstructions and perturbation simulations reveal individual drug response in different breast cancer cell lines

    Science.gov (United States)

    2014-01-01

    Background Despite promising progress in targeted breast cancer therapy, drug resistance remains challenging. The monoclonal antibody drugs trastuzumab and pertuzumab as well as the small molecule inhibitor erlotinib were designed to prevent ErbB-2 and ErbB-1 receptor induced deregulated protein signalling, contributing to tumour progression. The oncogenic potential of ErbB receptors unfolds in case of overexpression or mutations. Dimerisation with other receptors allows to bypass pathway blockades. Our intention is to reconstruct the ErbB network to reveal resistance mechanisms. We used longitudinal proteomic data of ErbB receptors and downstream targets in the ErbB-2 amplified breast cancer cell lines BT474, SKBR3 and HCC1954 treated with erlotinib, trastuzumab or pertuzumab, alone or combined, up to 60 minutes and 30 hours, respectively. In a Boolean modelling approach, signalling networks were reconstructed based on these data in a cell line and time course specific manner, including prior literature knowledge. Finally, we simulated network response to inhibitor combinations to detect signalling nodes reflecting growth inhibition. Results The networks pointed to cell line specific activation patterns of the MAPK and PI3K pathway. In BT474, the PI3K signal route was favoured, while in SKBR3, novel edges highlighted MAPK signalling. In HCC1954, the inferred edges stimulated both pathways. For example, we uncovered feedback loops amplifying PI3K signalling, in line with the known trastuzumab resistance of this cell line. In the perturbation simulations on the short-term networks, we analysed ERK1/2, AKT and p70S6K. The results indicated a pathway specific drug response, driven by the type of growth factor stimulus. HCC1954 revealed an edgetic type of PIK3CA-mutation, contributing to trastuzumab inefficacy. Drug impact on the AKT and ERK1/2 signalling axes is mirrored by effects on RB and RPS6, relating to phenotypic events like cell growth or proliferation

  18. Towards Modelling and Simulation of Crowded Environments in Cell Biology

    Science.gov (United States)

    Bittig, Arne T.; Jeschke, Matthias; Uhrmacher, Adelinde M.

    2010-09-01

    In modelling and simulation of cell biological processes, spatial homogeneity in the distribution of components is a common but not always valid assumption. Spatial simulation methods differ in computational effort and accuracy, and usually rely on tool-specific input formats for model specification. A clear separation between modelling and simulation allows a declarative model specification thereby facilitating reuse of models and exploiting different simulators. We outline a modelling formalism covering both stochastic spatial simulation at the population level and simulation of individual entities moving in continuous space as well as the combination thereof. A multi-level spatial simulator is presented that combines populations of small particles simulated according to the Next Subvolume Method with individually represented large particles following Brownian motion. This approach entails several challenges that need to be overcome, but nicely balances between calculation effort and required levels of detail.

  19. Modeling and simulation of cascading contingencies

    Science.gov (United States)

    Zhang, Jianfeng

    This dissertation proposes a new approach to model and study cascading contingencies in large power systems. The most important contribution of the work involves the development and validation of a heuristic analytic model to assess the likelihood of cascading contingencies, and the development and validation of a uniform search strategy. We model the probability of cascading contingencies as a function of power flow and power flow changes. Utilizing logistic regression, the proposed model is calibrated using real industry data. This dissertation analyzes random search strategies for Monte Carlo simulations and proposes a new uniform search strategy based on the Metropolis-Hastings Algorithm. The proposed search strategy is capable of selecting the most significant cascading contingencies, and it is capable of constructing an unbiased estimator to provide a measure of system security. This dissertation makes it possible to reasonably quantify system security and justify security operations when economic concerns conflict with reliability concerns in the new competitive power market environment. It can also provide guidance to system operators about actions that may be taken to reduce the risk of major system blackouts. Various applications can be developed to take advantage of the quantitative security measures provided in this dissertation.

  20. Network condition simulator for benchmarking sewer deterioration models.

    Science.gov (United States)

    Scheidegger, A; Hug, T; Rieckermann, J; Maurer, M

    2011-10-15

    An accurate description of aging and deterioration of urban drainage systems is necessary for optimal investment and rehabilitation planning. Due to a general lack of suitable datasets, network condition models are rarely validated, and if so with varying levels of success. We therefore propose a novel network condition simulator (NetCoS) that produces a synthetic population of sewer sections with a given condition-class distribution. NetCoS can be used to benchmark deterioration models and guide utilities in the selection of appropriate models and data management strategies. The underlying probabilistic model considers three main processes: a) deterioration, b) replacement policy, and c) expansions of the sewer network. The deterioration model features a semi-Markov chain that uses transition probabilities based on user-defined survival functions. The replacement policy is approximated with a condition-class dependent probability of replacing a sewer pipe. The model then simulates the course of the sewer sections from the installation of the first line to the present, adding new pipes based on the defined replacement and expansion program. We demonstrate the usefulness of NetCoS in two examples where we quantify the influence of incomplete data and inspection frequency on the parameter estimation of a cohort survival model and a Markov deterioration model. Our results show that typical available sewer inventory data with discarded historical data overestimate the average life expectancy by up to 200 years. Although NetCoS cannot prove the validity of a particular deterioration model, it is useful to reveal its possible limitations and shortcomings and quantifies the effects of missing or uncertain data. Future developments should include additional processes, for example to investigate the long-term effect of pipe rehabilitation measures, such as inliners. Copyright © 2011 Elsevier Ltd. All rights reserved.

  1. Transient β-hairpin formation in α-synuclein monomer revealed by coarse-grained molecular dynamics simulation

    Energy Technology Data Exchange (ETDEWEB)

    Yu, Hang; Ma, Wen [Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801 (United States); Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801 (United States); Han, Wei [Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801 (United States); Department of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801 (United States); Schulten, Klaus, E-mail: kschulte@ks.uiuc.edu [Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801 (United States); Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801 (United States); Department of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801 (United States)

    2015-12-28

    Parkinson’s disease, originating from the intrinsically disordered peptide α-synuclein, is a common neurodegenerative disorder that affects more than 5% of the population above age 85. It remains unclear how α-synuclein monomers undergo conformational changes leading to aggregation and formation of fibrils characteristic for the disease. In the present study, we perform molecular dynamics simulations (over 180 μs in aggregated time) using a hybrid-resolution model, Proteins with Atomic details in Coarse-grained Environment (PACE), to characterize in atomic detail structural ensembles of wild type and mutant monomeric α-synuclein in aqueous solution. The simulations reproduce structural properties of α-synuclein characterized in experiments, such as secondary structure content, long-range contacts, chemical shifts, and {sup 3}J(H{sub N}H{sub C{sub α}})-coupling constants. Most notably, the simulations reveal that a short fragment encompassing region 38-53, adjacent to the non-amyloid-β component region, exhibits a high probability of forming a β-hairpin; this fragment, when isolated from the remainder of α-synuclein, fluctuates frequently into its β-hairpin conformation. Two disease-prone mutations, namely, A30P and A53T, significantly accelerate the formation of a β-hairpin in the stated fragment. We conclude that the formation of a β-hairpin in region 38-53 is a key event during α-synuclein aggregation. We predict further that the G47V mutation impedes the formation of a turn in the β-hairpin and slows down β-hairpin formation, thereby retarding α-synuclein aggregation.

  2. Nonlinear distortion in wireless systems modeling and simulation with Matlab

    CERN Document Server

    Gharaibeh, Khaled M

    2011-01-01

    This book covers the principles of modeling and simulation of nonlinear distortion in wireless communication systems with MATLAB simulations and techniques In this book, the author describes the principles of modeling and simulation of nonlinear distortion in single and multichannel wireless communication systems using both deterministic and stochastic signals. Models and simulation methods of nonlinear amplifiers explain in detail how to analyze and evaluate the performance of data communication links under nonlinear amplification. The book addresses the analysis of nonlinear systems

  3. AISIM (Automated Interactive Simulation Modeling System) VAX Version Training Manual.

    Science.gov (United States)

    1985-02-01

    AD-Ri6t 436 AISIM (RUTOMATED INTERACTIVE SIMULATION MODELING 1/2 SYSTEM) VAX VERSION TRAI (U) HUGHES AIRCRAFT CO FULLERTON CA GROUND SYSTEMS GROUP S...Continue on reverse if necessary and Identify by block number) THIS DOCUMENT IS THE TRAINING MANUAL FOR THE AUTOMATED INTERACTIVE SIMULATION MODELING SYSTEM...form. Page 85 . . . . . . . . APPENDIX B SIMULATION REPORT FOR WORKING EXAMPLE Pa jPage.8 7AD-Ai6i 46 ISIM (AUTOMATED INTERACTIVE SIMULATION MODELING 2

  4. Tecnomatix Plant Simulation modeling and programming by means of examples

    CERN Document Server

    Bangsow, Steffen

    2015-01-01

    This book systematically introduces the development of simulation models as well as the implementation and evaluation of simulation experiments with Tecnomatix Plant Simulation. It deals with all users of Plant Simulation, who have more complex tasks to handle. It also looks for an easy entry into the program. Particular attention has been paid to introduce the simulation flow language SimTalk and its use in various areas of the simulation. The author demonstrates with over 200 examples how to combine the blocks for simulation models and how to deal with SimTalk for complex control and analys

  5. Modeling human response errors in synthetic flight simulator domain

    Science.gov (United States)

    Ntuen, Celestine A.

    1992-01-01

    This paper presents a control theoretic approach to modeling human response errors (HRE) in the flight simulation domain. The human pilot is modeled as a supervisor of a highly automated system. The synthesis uses the theory of optimal control pilot modeling for integrating the pilot's observation error and the error due to the simulation model (experimental error). Methods for solving the HRE problem are suggested. Experimental verification of the models will be tested in a flight quality handling simulation.

  6. Cognitive Modeling for Agent-Based Simulation of Child Maltreatment

    Science.gov (United States)

    Hu, Xiaolin; Puddy, Richard

    This paper extends previous work to develop cognitive modeling for agent-based simulation of child maltreatment (CM). The developed model is inspired from parental efficacy, parenting stress, and the theory of planned behavior. It provides an explanatory, process-oriented model of CM and incorporates causality relationship and feedback loops from different factors in the social ecology in order for simulating the dynamics of CM. We describe the model and present simulation results to demonstrate the features of this model.

  7. LADEE Satellite Modeling and Simulation Development

    Science.gov (United States)

    Adams, Michael; Cannon, Howard; Frost, Chad

    2011-01-01

    As human activity on and around the Moon increases, so does the likelihood that our actions will have an impact on its atmosphere. The Lunar Atmosphere and Dust Environment Explorer (LADEE), a NASA satellite scheduled to launch in 2013, will orbit the Moon collecting composition, density, and time variability data to characterize the current state of the lunar atmosphere. LADEE will also test the concept of the "Modular Common Bus" spacecraft architecture, an effort to reduce both development time and cost by designing reusable, modular components for use in multiple missions with similar requirements. An important aspect of this design strategy is to both simulate the spacecraft and develop the flight code in Simulink, a block diagram-style programming language that allows easy algorithm visualization and performance testing. Before flight code can be tested, however, a realistic simulation of the satellite and its dynamics must be generated and validated. This includes all of the satellite control system components such as actuators used for force and torque generation and sensors used for inertial orientation reference. My primary responsibilities have included designing, integrating, and testing models for the LADEE thrusters, reaction wheels, star trackers, and rate gyroscopes.

  8. Protein dynamics at Eph receptor-ligand interfaces as revealed by crystallography, NMR and MD simulations

    Directory of Open Access Journals (Sweden)

    Qin Haina

    2012-01-01

    Full Text Available Abstract Background The role of dynamics in protein functions including signal transduction is just starting to be deciphered. Eph receptors with 16 members divided into A- and B- subclasses are respectively activated by 9 A- and B-ephrin ligands. EphA4 is the only receptor capable of binding to all 9 ephrins and small molecules with overlapped interfaces. Results We first determined the structures of the EphA4 ligand binding domain (LBD in two crystals of P1 space group. Noticeably, 8 EphA4 molecules were found in one asymmetric unit and consequently from two crystals we obtained 16 structures, which show significant conformational variations over the functionally critical A-C, D-E, G-H and J-K loops. The 16 new structures, together with previous 9 ones, can be categorized into two groups: closed and open forms which resemble the uncomplexed and complexed structures of the EphA4 LBD respectively. To assess whether the conformational diversity over the loops primarily results from the intrinsic dynamics, we initiated 30-ns molecular dynamics (MD simulations for both closed and open forms. The results indicate that the loops do have much higher intrinsic dynamics, which is further unravelled by NMR H/D exchange experiments. During simulations, the open form has the RMS deviations slightly larger than those of the closed one, suggesting the open form may be less stable in the absence of external contacts. Furthermore, no obvious exchange between two forms is observed within 30 ns, implying that they are dynamically separated. Conclusions Our study provides the first experimental and computational result revealing that the intrinsic dynamics are most likely underlying the conformational diversity observed for the EphA4 LBD loops mediating the binding affinity and specificity. Interestingly, the open conformation of the EphA4 LBD is slightly unstable in the absence of it natural ligand ephrins, implying that the conformational transition from the

  9. Modeling and simulation technology readiness levels.

    Energy Technology Data Exchange (ETDEWEB)

    Clay, Robert L.; Shneider, Max S.; Marburger, S. J.; Trucano, Timothy Guy

    2006-01-01

    This report summarizes the results of an effort to establish a framework for assigning and communicating technology readiness levels (TRLs) for the modeling and simulation (ModSim) capabilities at Sandia National Laboratories. This effort was undertaken as a special assignment for the Weapon Simulation and Computing (WSC) program office led by Art Hale, and lasted from January to September 2006. This report summarizes the results, conclusions, and recommendations, and is intended to help guide the program office in their decisions about the future direction of this work. The work was broken out into several distinct phases, starting with establishing the scope and definition of the assignment. These are characterized in a set of key assertions provided in the body of this report. Fundamentally, the assignment involved establishing an intellectual framework for TRL assignments to Sandia's modeling and simulation capabilities, including the development and testing of a process to conduct the assignments. To that end, we proposed a methodology for both assigning and understanding the TRLs, and outlined some of the restrictions that need to be placed on this process and the expected use of the result. One of the first assumptions we overturned was the notion of a ''static'' TRL--rather we concluded that problem context was essential in any TRL assignment, and that leads to dynamic results (i.e., a ModSim tool's readiness level depends on how it is used, and by whom). While we leveraged the classic TRL results from NASA, DoD, and Sandia's NW program, we came up with a substantially revised version of the TRL definitions, maintaining consistency with the classic level definitions and the Predictive Capability Maturity Model (PCMM) approach. In fact, we substantially leveraged the foundation the PCMM team provided, and augmented that as needed. Given the modeling and simulation TRL definitions and our proposed assignment methodology, we

  10. Modeling and simulation of surface roughness

    Energy Technology Data Exchange (ETDEWEB)

    Patrikar, Rajendra M

    2004-04-30

    With the technology advancement, electronic devices are miniaturized at every development node. Physical parameters such as microscopic roughness are affecting these devices because surface to volume ratio is increasing rapidly. On all the real surfaces microscopic roughness appears, which affects many electronic properties of the material, which in turn decides the yield and reliability of the devices. Different type of parameters and simulation methods are used to describe the surface roughness. Classically surface roughness was modeled by methods such as power series and Fast Fourier Transform (FFT). Limitations of this methods lead to use the concept of self-similar fractals to model the rough surface through Mandelbrot-Weierstrass function. It is difficult to express surface roughness as a function of process parameters in the form of analytical functions. Method based on neural networks has been used to model these surfaces to map the process parameters to roughness parameters. Finally, change in electrical parameters such as capacitance, resistance and noise due to surface roughness has been computed by numerical methods.

  11. Power-Law Modeling of Cancer Cell Fates Driven by Signaling Data to Reveal Drug Effects

    Science.gov (United States)

    Zhang, Fan; Wu, Min; Kwoh, Chee Keong; Zheng, Jie

    2016-01-01

    Extracellular signals are captured and transmitted by signaling proteins inside a cell. An important type of cellular responses to the signals is the cell fate decision, e.g., apoptosis. However, the underlying mechanisms of cell fate regulation are still unclear, thus comprehensive and detailed kinetic models are not yet available. Alternatively, data-driven models are promising to bridge signaling data with the phenotypic measurements of cell fates. The traditional linear model for data-driven modeling of signaling pathways has its limitations because it assumes that the a cell fate is proportional to the activities of signaling proteins, which is unlikely in the complex biological systems. Therefore, we propose a power-law model to relate the activities of all the measured signaling proteins to the probabilities of cell fates. In our experiments, we compared our nonlinear power-law model with the linear model on three cancer datasets with phosphoproteomics and cell fate measurements, which demonstrated that the nonlinear model has superior performance on cell fates prediction. By in silico simulation of virtual protein knock-down, the proposed model is able to reveal drug effects which can complement traditional approaches such as binding affinity analysis. Moreover, our model is able to capture cell line specific information to distinguish one cell line from another in cell fate prediction. Our results show that the power-law data-driven model is able to perform better in cell fate prediction and provide more insights into the signaling pathways for cancer cell fates than the linear model. PMID:27764199

  12. Aminoglycoside nephrotoxicity: modeling, simulation, and control.

    Science.gov (United States)

    Rougier, Florent; Claude, Daniel; Maurin, Michel; Sedoglavic, Alexandre; Ducher, Michel; Corvaisier, Stéphane; Jelliffe, Roger; Maire, Pascal

    2003-03-01

    The main constraints on the administration of aminoglycosides are the risks of nephrotoxicity and ototoxicity, which can lead to acute, renal, vestibular, and auditory toxicities. In the present study we focused on nephrotoxicity. No reliable predictor of nephrotoxicity has been found to date. We have developed a deterministic model which describes the pharmacokinetic behavior of aminoglycosides (with a two-compartment model), the kinetics of aminoglycoside accumulation in the renal cortex, the effects of aminoglycosides on renal cells, the resulting effects on renal function by tubuloglomerular feedback, and the resulting effects on serum creatinine concentrations. The pharmacokinetic parameter values were estimated by use of the NPEM program. The estimated pharmacodynamic parameter values were obtained after minimization of the least-squares objective function between the measured and the calculated serum creatinine concentrations. A simulation program assessed the influences of the dosage regimens on the occurrence of nephrotoxicity. We have also demonstrated the relevancy of modeling of the circadian rhythm of the renal function. We have shown the ability of the model to fit with 49 observed serum creatinine concentrations for a group of eight patients treated for endocarditis by comparison with 49 calculated serum creatinine concentrations (r(2) = 0.988; P < 0.001). We have found that for the same daily dose, the nephrotoxicity observed with a thrice-daily administration schedule appears more rapidly, induces a greater decrease in renal function, and is more prolonged than those that occur with less frequent administration schedules (for example, once-daily administration). Moreover, for once-daily administration, we have demonstrated that the time of day of administration can influence the incidence of aminoglycoside nephrotoxicity. The lowest level of nephrotoxicity was observed when aminoglycosides were administered at 1:30 p.m. Clinical application of this

  13. Using Transport Diagnostics to Understand Chemistry Climate Model Ozone Simulations

    Science.gov (United States)

    Strahan, S. E.; Douglass, A. R.; Stolarski, R. S.; Akiyoshi, H.; Bekki, S.; Braesicke, P.; Butchart, N.; Chipperfield, M. P.; Cugnet, D.; Dhomse, S.; Frith, S. M.; Gettleman, A.; Hardiman, S. C.; Kinnison, D. E.; Lamarque, J.-F.; Mancini, E.; Marchand, M.; Michou, M.; Morgenstern, O.; Nakamura, T.; Olivie, D.; Pawson, S.; Pitari, G.; Plummer, D. A.; Pyle, J. A.

    2010-01-01

    We demonstrate how observations of N2O and mean age in the tropical and midlatitude lower stratosphere (LS) can be used to identify realistic transport in models. The results are applied to 15 Chemistry Climate Models (CCMs) participating in the 2010 WMO assessment. Comparison of the observed and simulated N2O/mean age relationship identifies models with fast or slow circulations and reveals details of model ascent and tropical isolation. The use of this process-oriented N2O/mean age diagnostic identifies models with compensating transport deficiencies that produce fortuitous agreement with mean age. We compare the diagnosed model transport behavior with a model's ability to produce realistic LS O3 profiles in the tropics and midlatitudes. Models with the greatest tropical transport problems show the poorest agreement with observations. Models with the most realistic LS transport agree more closely with LS observations and each other. We incorporate the results of the chemistry evaluations in the SPARC CCMVal Report (2010) to explain the range of CCM predictions for the return-to-1980 dates for global (60 S-60 N) and Antarctic column ozone. Later (earlier) Antarctic return dates are generally correlated to higher (lower) vortex Cl(sub y) levels in the LS, and vortex Cl(sub y) is generally correlated with the model's circulation although model Cl(sub y) chemistry or Cl(sub y) conservation can have a significant effect. In both regions, models that have good LS transport produce a smaller range of predictions for the return-to-1980 ozone values. This study suggests that the current range of predicted return dates is unnecessarily large due to identifiable model transport deficiencies.

  14. Evaluation of cloud resolving model simulations of midlatitude cirrus with ARM and A-Train observations

    Science.gov (United States)

    Muehlbauer, A. D.; Ackerman, T. P.; Lawson, P.; Xie, S.; Zhang, Y.

    2015-12-01

    This paper evaluates cloud resolving model (CRM) and cloud system-resolving model (CSRM) simulations of a midlatitude cirrus case with comprehensive observations collected under the auspices of the Atmospheric Radiation Measurements (ARM) program and with spaceborne observations from the National Aeronautics and Space Administration (NASA) A-train satellites. Vertical profiles of temperature, relative humidity and wind speeds are reasonably well simulated by the CSRM and CRM but there are remaining biases in the temperature, wind speeds and relative humidity, which can be mitigated through nudging the model simulations toward the observed radiosonde profiles. Simulated vertical velocities are underestimated in all simulations except in the CRM simulations with grid spacings of 500m or finer, which suggests that turbulent vertical air motions in cirrus clouds need to be parameterized in GCMs and in CSRM simulations with horizontal grid spacings on the order of 1km. The simulated ice water content and ice number concentrations agree with the observations in the CSRM but are underestimated in the CRM simulations. The underestimation of ice number concentrations is consistent with the overestimation of radar reflectivity in the CRM simulations and suggests that the model produces too many large ice particles especially toward cloud base. Simulated cloud profiles are rather insensitive to perturbations in the initial conditions or the dimensionality of the model domain but the treatment of the forcing data has a considerable effect on the outcome of the model simulations. Despite considerable progress in observations and microphysical parameterizations, simulating the microphysical, macrophysical and radiative properties of cirrus remains challenging. Comparing model simulations with observations from multiple instruments and observational platforms is important for revealing model deficiencies and for providing rigorous benchmarks. However, there still is considerable

  15. Modeling and simulation of PCM-enhanced facade systems

    Science.gov (United States)

    Al-Saadi, Saleh Nasser

    Building facade contributes to the overall architectural aesthetic but can be utilized for heat storage when proper systems are incorporated. Latent heat storage such as using a phase change material (PCM) gains growing attentions recently due to its ability of storing significant thermal energy within a small volume, making it one of most promising technologies for developing energy efficient buildings. This research is focused on modeling and simulation of PCM when integrated into advanced facade systems. The study first reviews the different mathematical modeling methods generally used for PCM's simulations. It categorizes the PCM's numerical models that are implemented for standalone facade systems. The study then evaluates the PCM's models that are integrated into whole building simulation tools such as EnergyPlus, TRNSYS, ESPr etc. It is revealed that the heat capacity method is mostly used in programs, despite its limitations on time and spatial resolutions. Therefore, alternative numerical models are investigated to overcome the above constrains and limitations in current PCM's simulation practice. Eight potential computational models based on a fully implicit finite volume method are developed in MATLAB/SIMULINK environment, validated using experimental results from the literature and verified against well-known building simulation programs. A linearized enthalpy method with hybrid correction scheme is proposed and validated in this work as an improvement to the existing numerical schemes for implementation into building simulation tools. Through sensitivity analysis achieved by varying the PCM thermal properties, the models have been analyzed for their computational efficiency and prediction accuracy. Some models are found sensitive to melting range of PCM, for example heat capacity method, but less sensitive to the variations of latent heat. Among the correction schemes, the non-iterative scheme is inaccurate due to the significant temperature spikes

  16. Interplay of protein and DNA structure revealed in simulations of the lac operon.

    Directory of Open Access Journals (Sweden)

    Luke Czapla

    Full Text Available The E. coli Lac repressor is the classic textbook example of a protein that attaches to widely spaced sites along a genome and forces the intervening DNA into a loop. The short loops implicated in the regulation of the lac operon suggest the involvement of factors other than DNA and repressor in gene control. The molecular simulations presented here examine two likely structural contributions to the in-vivo looping of bacterial DNA: the distortions of the double helix introduced upon association of the highly abundant, nonspecific nucleoid protein HU and the large-scale deformations of the repressor detected in low-resolution experiments. The computations take account of the three-dimensional arrangements of nucleotides and amino acids found in crystal structures of DNA with the two proteins, the natural rest state and deformational properties of protein-free DNA, and the constraints on looping imposed by the conformation of the repressor and the orientation of bound DNA. The predicted looping propensities capture the complex, chain-length-dependent variation in repression efficacy extracted from gene expression studies and in vitro experiments and reveal unexpected chain-length-dependent variations in the uptake of HU, the deformation of repressor, and the folding of DNA. Both the opening of repressor and the presence of HU, at levels approximating those found in vivo, enhance the probability of loop formation. HU affects the global organization of the repressor and the opening of repressor influences the levels of HU binding to DNA. The length of the loop determines whether the DNA adopts antiparallel or parallel orientations on the repressor, whether the repressor is opened or closed, and how many HU molecules bind to the loop. The collective behavior of proteins and DNA is greater than the sum of the parts and hints of ways in which multiple proteins may coordinate the packaging and processing of genetic information.

  17. The modeling of miniature UAV flight visualization simulation platform

    Science.gov (United States)

    Li, Dong-hui; Li, Xin; Yang, Le-le; Li, Xiong

    2015-12-01

    This paper combines virtual technology with visualization visual simulation theory, construct the framework of visual simulation platform, apply open source software FlightGear simulator combined with GoogleEarth design a small UAV flight visual simulation platform. Using software AC3D to build 3D models of aircraft and complete the model loading based on XML configuration, the design and simulation of visualization modeling visual platform is presented. By using model-driven and data transforming in FlightGear , the design of data transmission module is realized based on Visual Studio 2010 development platform. Finally combined with GoogleEarth it can achieve the tracking and display.

  18. Shuttle operations simulation model programmers'/users' manual

    Science.gov (United States)

    Porter, D. G.

    1972-01-01

    The prospective user of the shuttle operations simulation (SOS) model is given sufficient information to enable him to perform simulation studies of the space shuttle launch-to-launch operations cycle. The procedures used for modifying the SOS model to meet user requirements are described. The various control card sequences required to execute the SOS model are given. The report is written for users with varying computer simulation experience. A description of the components of the SOS model is included that presents both an explanation of the logic involved in the simulation of the shuttle operations cycle and a description of the routines used to support the actual simulation.

  19. Discrete Element Simulation of Asphalt Mastics Based on Burgers Model

    Institute of Scientific and Technical Information of China (English)

    LIU Yu; FENG Shi-rong; HU Xia-guang

    2007-01-01

    In order to investigate the viscoelastic performance of asphalt mastics, a micro-mechanical model for asphalt mastics was built by applying Burgers model to discrete element simulation and constructing Burgers contact model. Then the numerical simulation of creep tests was conducted, and results from the simulation were compared with the analytical solution for Burgers model. The comparision snowed that the two results agreed well with each other, suggesting that discrete element model based on Burgers model could be employed in the numerical simulation for asphalt mastics.

  20. A Geostationary Earth Orbit Satellite Model Using Easy Java Simulation

    Science.gov (United States)

    Wee, Loo Kang; Goh, Giam Hwee

    2013-01-01

    We develop an Easy Java Simulation (EJS) model for students to visualize geostationary orbits near Earth, modelled using a Java 3D implementation of the EJS 3D library. The simplified physics model is described and simulated using a simple constant angular velocity equation. We discuss four computer model design ideas: (1) a simple and realistic…

  1. Knowledge-based modeling of discrete-event simulation systems

    NARCIS (Netherlands)

    H. de Swaan Arons

    1999-01-01

    textabstractModeling a simulation system requires a great deal of customization. At first sight no system seems to resemble exactly another system and every time a new model has to be designed the modeler has to start from scratch. The present simulation languages provide the modeler with powerful

  2. Knowledge-based modeling of discrete-event simulation systems

    NARCIS (Netherlands)

    H. de Swaan Arons

    1999-01-01

    textabstractModeling a simulation system requires a great deal of customization. At first sight no system seems to resemble exactly another system and every time a new model has to be designed the modeler has to start from scratch. The present simulation languages provide the modeler with powerful t

  3. A Geostationary Earth Orbit Satellite Model Using Easy Java Simulation

    Science.gov (United States)

    Wee, Loo Kang; Goh, Giam Hwee

    2013-01-01

    We develop an Easy Java Simulation (EJS) model for students to visualize geostationary orbits near Earth, modelled using a Java 3D implementation of the EJS 3D library. The simplified physics model is described and simulated using a simple constant angular velocity equation. We discuss four computer model design ideas: (1) a simple and realistic…

  4. Data-driven modeling reveals cell behaviors controlling self-organization during Myxococcus xanthus development.

    Science.gov (United States)

    Cotter, Christopher R; Schüttler, Heinz-Bernd; Igoshin, Oleg A; Shimkets, Lawrence J

    2017-06-06

    Collective cell movement is critical to the emergent properties of many multicellular systems, including microbial self-organization in biofilms, embryogenesis, wound healing, and cancer metastasis. However, even the best-studied systems lack a complete picture of how diverse physical and chemical cues act upon individual cells to ensure coordinated multicellular behavior. Known for its social developmental cycle, the bacterium Myxococcus xanthus uses coordinated movement to generate three-dimensional aggregates called fruiting bodies. Despite extensive progress in identifying genes controlling fruiting body development, cell behaviors and cell-cell communication mechanisms that mediate aggregation are largely unknown. We developed an approach to examine emergent behaviors that couples fluorescent cell tracking with data-driven models. A unique feature of this approach is the ability to identify cell behaviors affecting the observed aggregation dynamics without full knowledge of the underlying biological mechanisms. The fluorescent cell tracking revealed large deviations in the behavior of individual cells. Our modeling method indicated that decreased cell motility inside the aggregates, a biased walk toward aggregate centroids, and alignment among neighboring cells in a radial direction to the nearest aggregate are behaviors that enhance aggregation dynamics. Our modeling method also revealed that aggregation is generally robust to perturbations in these behaviors and identified possible compensatory mechanisms. The resulting approach of directly combining behavior quantification with data-driven simulations can be applied to more complex systems of collective cell movement without prior knowledge of the cellular machinery and behavioral cues.

  5. Revealing spatially heterogeneous relaxation in a model nanocomposite

    CERN Document Server

    Cheng, Shiwang; Carrillo, Jan-Michael Y; Bocharova, Vera; Sumpter, Bobby G; Schweizer, Kenneth S; Sokolov, Alexei P

    2015-01-01

    The detailed nature of spatially heterogeneous dynamics of glycerol-silica nanocomposites is unraveled by combining dielectric spectroscopy with atomistic simulation and statistical mechanical theory. Analysis of the spatial mobility gradient shows no 'glassy' layer, but the alpha relaxation time near the nanoparticle grows with cooling faster than the alpha relaxation time in the bulk, and is ~ 20 times longer at low temperatures. The interfacial layer thickness increases from ~ 1.8 nm at higher temperatures to ~ 3.5 nm upon cooling to near Tg. A real space microscopic description of the mobility gradient is constructed by synergistically combining high temperature atomistic simulation with theory. Our analysis suggests that the interfacial slowing down arises mainly due to an increase of the local cage scale barrier for activated hopping induced by enhanced packing and densification near the nanoparticle surface. The theory is employed to predict how local surface densification can be manipulated to control...

  6. Bringing consistency to simulation of population models--Poisson simulation as a bridge between micro and macro simulation.

    Science.gov (United States)

    Gustafsson, Leif; Sternad, Mikael

    2007-10-01

    Population models concern collections of discrete entities such as atoms, cells, humans, animals, etc., where the focus is on the number of entities in a population. Because of the complexity of such models, simulation is usually needed to reproduce their complete dynamic and stochastic behaviour. Two main types of simulation models are used for different purposes, namely micro-simulation models, where each individual is described with its particular attributes and behaviour, and macro-simulation models based on stochastic differential equations, where the population is described in aggregated terms by the number of individuals in different states. Consistency between micro- and macro-models is a crucial but often neglected aspect. This paper demonstrates how the Poisson Simulation technique can be used to produce a population macro-model consistent with the corresponding micro-model. This is accomplished by defining Poisson Simulation in strictly mathematical terms as a series of Poisson processes that generate sequences of Poisson distributions with dynamically varying parameters. The method can be applied to any population model. It provides the unique stochastic and dynamic macro-model consistent with a correct micro-model. The paper also presents a general macro form for stochastic and dynamic population models. In an appendix Poisson Simulation is compared with Markov Simulation showing a number of advantages. Especially aggregation into state variables and aggregation of many events per time-step makes Poisson Simulation orders of magnitude faster than Markov Simulation. Furthermore, you can build and execute much larger and more complicated models with Poisson Simulation than is possible with the Markov approach.

  7. Modeling and Simulation at Tidewater Community College

    Science.gov (United States)

    Summers, Michael

    2008-01-01

    Investment of $1.5 million in medical simulation technology. Integration of medical simulation activities into the curriculum. Support from TCC leadership. Individual and team activities. Skill development and critical thinking/problem solving skills.

  8. Model simulations of rainfall over southern Africa and its eastern ...

    African Journals Online (AJOL)

    2016-01-01

    Jan 1, 2016 ... 2015). Two different types of CCAM simulations are ana- lysed here. Firstly, an ...... Sweden: observation versus model simulation. Tellus A 63 http:// ... for Atmospheric Sciences, September 2011, Hartebeeshoek. NESBITT SW ...

  9. Lattice Boltzmann modeling of directional wetting: Comparing simulations to experiments

    NARCIS (Netherlands)

    Jansen, H.P.; Sotthewes, K.; Swigchem, van J.; Zandvliet, H.J.W.; Kooij, E.S.

    2013-01-01

    Lattice Boltzmann Modeling (LBM) simulations were performed on the dynamic behavior of liquid droplets on chemically striped patterned surfaces, ultimately with the aim to develop a predictive tool enabling reliable design of future experiments. The simulations accurately mimic experimental results,

  10. An educational model for ensemble streamflow simulation and uncertainty analysis

    National Research Council Canada - National Science Library

    AghaKouchak, A; Nakhjiri, N; Habib, E

    2013-01-01

    ...) are interconnected. The educational toolbox includes a MATLAB Graphical User Interface (GUI) and an ensemble simulation scheme that can be used for teaching uncertainty analysis, parameter estimation, ensemble simulation and model sensitivity...

  11. A simulation model for analysing brain structure deformations

    Energy Technology Data Exchange (ETDEWEB)

    Bona, Sergio Di [Institute for Information Science and Technologies, Italian National Research Council (ISTI-8211-CNR), Via G Moruzzi, 1-56124 Pisa (Italy); Lutzemberger, Ludovico [Department of Neuroscience, Institute of Neurosurgery, University of Pisa, Via Roma, 67-56100 Pisa (Italy); Salvetti, Ovidio [Institute for Information Science and Technologies, Italian National Research Council (ISTI-8211-CNR), Via G Moruzzi, 1-56124 Pisa (Italy)

    2003-12-21

    Recent developments of medical software applications from the simulation to the planning of surgical operations have revealed the need for modelling human tissues and organs, not only from a geometric point of view but also from a physical one, i.e. soft tissues, rigid body, viscoelasticity, etc. This has given rise to the term 'deformable objects', which refers to objects with a morphology, a physical and a mechanical behaviour of their own and that reflects their natural properties. In this paper, we propose a model, based upon physical laws, suitable for the realistic manipulation of geometric reconstructions of volumetric data taken from MR and CT scans. In particular, a physically based model of the brain is presented that is able to simulate the evolution of different nature pathological intra-cranial phenomena such as haemorrhages, neoplasm, haematoma, etc and to describe the consequences that are caused by their volume expansions and the influences they have on the anatomical and neuro-functional structures of the brain.

  12. Simulation and Modeling Application in Agricultural Mechanization

    Directory of Open Access Journals (Sweden)

    R. M. Hudzari

    2012-01-01

    Full Text Available This experiment was conducted to determine the equations relating the Hue digital values of the fruits surface of the oil palm with maturity stage of the fruit in plantation. The FFB images were zoomed and captured using Nikon digital camera, and the calculation of Hue was determined using the highest frequency of the value for R, G, and B color components from histogram analysis software. New procedure in monitoring the image pixel value for oil palm fruit color surface in real-time growth maturity was developed. The estimation of day harvesting prediction was calculated based on developed model of relationships for Hue values with mesocarp oil content. The simulation model is regressed and predicts the day of harvesting or a number of days before harvest of FFB. The result from experimenting on mesocarp oil content can be used for real-time oil content determination of MPOB color meter. The graph to determine the day of harvesting the FFB was presented in this research. The oil was found to start developing in mesocarp fruit at 65 days before fruit at ripe maturity stage of 75% oil to dry mesocarp.

  13. Modelling toolkit for simulation of maglev devices

    Science.gov (United States)

    Peña-Roche, J.; Badía-Majós, A.

    2017-01-01

    A stand-alone App1 has been developed, focused on obtaining information about relevant engineering properties of magnetic levitation systems. Our modelling toolkit provides real time simulations of 2D magneto-mechanical quantities for superconductor (SC)/permanent magnet structures. The source code is open and may be customised for a variety of configurations. Ultimately, it relies on the variational statement of the critical state model for the superconducting component and has been verified against experimental data for YBaCuO/NdFeB assemblies. On a quantitative basis, the values of the arising forces, induced superconducting currents, as well as a plot of the magnetic field lines are displayed upon selection of an arbitrary trajectory of the magnet in the vicinity of the SC. The stability issues related to the cooling process, as well as the maximum attainable forces for a given material and geometry are immediately observed. Due to the complexity of the problem, a strategy based on cluster computing, database compression, and real-time post-processing on the device has been implemented.

  14. Simulation Models for Socioeconomic Inequalities in Health: A Systematic Review

    Directory of Open Access Journals (Sweden)

    Niko Speybroeck

    2013-11-01

    Full Text Available Background: The emergence and evolution of socioeconomic inequalities in health involves multiple factors interacting with each other at different levels. Simulation models are suitable for studying such complex and dynamic systems and have the ability to test the impact of policy interventions in silico. Objective: To explore how simulation models were used in the field of socioeconomic inequalities in health. Methods: An electronic search of studies assessing socioeconomic inequalities in health using a simulation model was conducted. Characteristics of the simulation models were extracted and distinct simulation approaches were identified. As an illustration, a simple agent-based model of the emergence of socioeconomic differences in alcohol abuse was developed. Results: We found 61 studies published between 1989 and 2013. Ten different simulation approaches were identified. The agent-based model illustration showed that multilevel, reciprocal and indirect effects of social determinants on health can be modeled flexibly. Discussion and Conclusions: Based on the review, we discuss the utility of using simulation models for studying health inequalities, and refer to good modeling practices for developing such models. The review and the simulation model example suggest that the use of simulation models may enhance the understanding and debate about existing and new socioeconomic inequalities of health frameworks.

  15. Molecular Dynamics Simulations Reveal the Mechanisms of Allosteric Activation of Hsp90 by Designed Ligands.

    Science.gov (United States)

    Vettoretti, Gerolamo; Moroni, Elisabetta; Sattin, Sara; Tao, Jiahui; Agard, David A; Bernardi, Anna; Colombo, Giorgio

    2016-04-01

    Controlling biochemical pathways through chemically designed modulators may provide novel opportunities to develop therapeutic drugs and chemical tools. The underlying challenge is to design new molecular entities able to act as allosteric chemical switches that selectively turn on/off functions by modulating the conformational dynamics of their target protein. We examine the origins of the stimulation of ATPase and closure kinetics in the molecular chaperone Hsp90 by allosteric modulators through atomistic molecular dynamics (MD) simulations and analysis of protein-ligand interactions. In particular, we focus on the cross-talk between allosteric ligands and protein conformations and its effect on the dynamic properties of the chaperone's active state. We examine the impact of different allosteric modulators on the stability, structural and internal dynamics properties of Hsp90 closed state. A critical aspect of this study is the development of a quantitative model that correlates Hsp90 activation to the presence of a certain compound, making use of information on the dynamic adaptation of protein conformations to the presence of the ligand, which allows to capture conformational states relevant in the activation process. We discuss the implications of considering the conformational dialogue between allosteric ligands and protein conformations for the design of new functional modulators.

  16. Nonequilibrium Chemical Effects in Single-Molecule SERS Revealed by Ab Initio Molecular Dynamics Simulations

    Energy Technology Data Exchange (ETDEWEB)

    Fischer, Sean A.; Apra, Edoardo; Govind, Niranjan; Hess, Wayne P.; El-Khoury, Patrick Z.

    2017-02-03

    Recent developments in nanophotonics have paved the way for achieving significant advances in the realm of single molecule chemical detection, imaging, and dynamics. In particular, surface-enhanced Raman scattering (SERS) is a powerful analytical technique that is now routinely used to identify the chemical identity of single molecules. Understanding how nanoscale physical and chemical processes affect single molecule SERS spectra and selection rules is a challenging task, and is still actively debated. Herein, we explore underappreciated chemical phenomena in ultrasensitive SERS. We observe a fluctuating excited electronic state manifold, governed by the conformational dynamics of a molecule (4,4’-dimercaptostilbene, DMS) interacting with a metallic cluster (Ag20). This affects our simulated single molecule SERS spectra; the time trajectories of a molecule interacting with its unique local environment dictates the relative intensities of the observable Raman-active vibrational states. Ab initio molecular dynamics of a model Ag20-DMS system are used to illustrate both concepts in light of recent experimental results.

  17. Powertrain modeling and simulation for off-road vehicles

    Energy Technology Data Exchange (ETDEWEB)

    Ouellette, S. [McGill Univ., Montreal, PQ (Canada)

    2010-07-01

    Standard forward facing automotive powertrain modeling and simulation methodology did not perform equally for all vehicles in all applications in the 2010 winter Olympics, 2009 world alpine ski championships, summit station in Greenland, the McGill Formula Hybrid, Unicell QuickSider, and lunar mobility. This presentation provided a standard automotive powertrain modeling and simulation flow chart as well as an example. It also provided a flow chart for location based powertrain modeling and simulation and discussed location based powertrain modeling and simulation implementation. It was found that in certain applications, vehicle-environment interactions cannot be neglected in order to have good model fidelity. Powertrain modeling and simulation of off-road vehicles demands a new approach to powertrain modeling and simulation. It was concluded that the proposed location based methodology could improve the results for off-road vehicles. tabs., figs.

  18. A Simulation Model for Evaluating Distributed Systems Dependability

    CERN Document Server

    Dobre, Ciprian; Cristea, Valentin

    2012-01-01

    In this paper we present a new simulation model designed to evaluate the dependability in distributed systems. This model extends the MONARC simulation model with new capabilities for capturing reliability, safety, availability, security, and maintainability requirements. The model has been implemented as an extension of the multithreaded, process oriented simulator MONARC, which allows the realistic simulation of a wide-range of distributed system technologies, with respect to their specific components and characteristics. The extended simulation model includes the necessary components to inject various failure events, and provides the mechanisms to evaluate different strategies for replication, redundancy procedures, and security enforcement mechanisms, as well. The results obtained in simulation experiments presented in this paper probe that the use of discrete-event simulators, such as MONARC, in the design and development of distributed systems is appealing due to their efficiency and scalability.

  19. Sunspot Modeling: From Simplified Models to Radiative MHD Simulations

    Directory of Open Access Journals (Sweden)

    Rolf Schlichenmaier

    2011-09-01

    Full Text Available We review our current understanding of sunspots from the scales of their fine structure to their large scale (global structure including the processes of their formation and decay. Recently, sunspot models have undergone a dramatic change. In the past, several aspects of sunspot structure have been addressed by static MHD models with parametrized energy transport. Models of sunspot fine structure have been relying heavily on strong assumptions about flow and field geometry (e.g., flux-tubes, "gaps", convective rolls, which were motivated in part by the observed filamentary structure of penumbrae or the necessity of explaining the substantial energy transport required to maintain the penumbral brightness. However, none of these models could self-consistently explain all aspects of penumbral structure (energy transport, filamentation, Evershed flow. In recent years, 3D radiative MHD simulations have been advanced dramatically to the point at which models of complete sunspots with sufficient resolution to capture sunspot fine structure are feasible. Here overturning convection is the central element responsible for energy transport, filamentation leading to fine-structure and the driving of strong outflows. On the larger scale these models are also in the progress of addressing the subsurface structure of sunspots as well as sunspot formation. With this shift in modeling capabilities and the recent advances in high resolution observations, the future research will be guided by comparing observation and theory.

  20. Predictive Capability Maturity Model for computational modeling and simulation.

    Energy Technology Data Exchange (ETDEWEB)

    Oberkampf, William Louis; Trucano, Timothy Guy; Pilch, Martin M.

    2007-10-01

    The Predictive Capability Maturity Model (PCMM) is a new model that can be used to assess the level of maturity of computational modeling and simulation (M&S) efforts. The development of the model is based on both the authors experience and their analysis of similar investigations in the past. The perspective taken in this report is one of judging the usefulness of a predictive capability that relies on the numerical solution to partial differential equations to better inform and improve decision making. The review of past investigations, such as the Software Engineering Institute's Capability Maturity Model Integration and the National Aeronautics and Space Administration and Department of Defense Technology Readiness Levels, indicates that a more restricted, more interpretable method is needed to assess the maturity of an M&S effort. The PCMM addresses six contributing elements to M&S: (1) representation and geometric fidelity, (2) physics and material model fidelity, (3) code verification, (4) solution verification, (5) model validation, and (6) uncertainty quantification and sensitivity analysis. For each of these elements, attributes are identified that characterize four increasing levels of maturity. Importantly, the PCMM is a structured method for assessing the maturity of an M&S effort that is directed toward an engineering application of interest. The PCMM does not assess whether the M&S effort, the accuracy of the predictions, or the performance of the engineering system satisfies or does not satisfy specified application requirements.

  1. Simulation modeling for long duration spacecraft control systems

    Science.gov (United States)

    Boyd, Mark A.; Bavuso, Salvatore J.

    1993-01-01

    The use of simulation is described and it is contrasted to analytical solution techniques for evaluation of analytical reliability models. The role importance sampling plays in simulation of models of this type was also discussed. The simulator tool used for our analysis is described. Finally, the use of the simulator tool was demonstrated by applying it to evaluate the reliability of a fault tolerant hypercube multiprocessor intended for spacecraft designed for long duration missions. The reliability analysis was used to highlight the advantages and disadvantages offered by simulation over analytical solution of Markovian and non-Markovian reliability models.

  2. Revealing spatially heterogeneous relaxation in a model nanocomposite

    Energy Technology Data Exchange (ETDEWEB)

    Cheng, Shiwang; Bocharova, Vera [Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831 (United States); Mirigian, Stephen; Schweizer, Kenneth S. [Department of Materials Science and Chemistry, Frederick Seitz Materials Research Laboratory, University of Illinois, Urbana, Illinois 61801 (United States); Carrillo, Jan-Michael Y.; Sumpter, Bobby G. [Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831 (United States); Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831 (United States); Sokolov, Alexei P., E-mail: sokolov@utk.edu [Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831 (United States); Department of Chemistry, Department of Physics and Astronomy, University of Tennessee, Knoxville, Tennessee 37996 (United States)

    2015-11-21

    The detailed nature of spatially heterogeneous dynamics of glycerol-silica nanocomposites is unraveled by combining dielectric spectroscopy with atomistic simulation and statistical mechanical theory. Analysis of the spatial mobility gradient shows no “glassy” layer, but the α-relaxation time near the nanoparticle grows with cooling faster than the α-relaxation time in the bulk and is ∼20 times longer at low temperatures. The interfacial layer thickness increases from ∼1.8 nm at higher temperatures to ∼3.5 nm upon cooling to near bulk T{sub g}. A real space microscopic description of the mobility gradient is constructed by synergistically combining high temperature atomistic simulation with theory. Our analysis suggests that the interfacial slowing down arises mainly due to an increase of the local cage scale barrier for activated hopping induced by enhanced packing and densification near the nanoparticle surface. The theory is employed to predict how local surface densification can be manipulated to control layer dynamics and shear rigidity over a wide temperature range.

  3. A new model to simulate impact breakup

    Science.gov (United States)

    Cordelli, Alessandro; Farinella, Paolo

    1997-12-01

    We have developed a preliminary version of a new type of code to simulate the outcomes of impacts between solid bodies, which we plan to further refine for application to both asteroid science and space debris studies. In the current code, colliding objects are modeled as two-dimensional arrays of finite elements, which can interact with each other in both an elastic and a shock-wave regime. The finite elements are hard spheres with a given value for mass and radius. When two of them come into contact the laws of inelastic scattering are applied, thus giving rise to the propagation of shock waves. Moreover each spherical element interacts elastically with its nearest neighbours. The interaction force corresponds to that of a spring having an equilibrium length equal to the lattice spacing, and results into the propagation of elastic waves in the lattice. Dissipation effects are modeled by means of a dissipative force term proportional to the relative velocity, with a given characteristic time of decay. The possible occurrence of fractures in the material is modeled by assuming that when the distance of two neighbouring elements exceeds a threshold value, the binding force between them disappears for ever. This model requires finding a plausible correspondence between the input parameters appearing in the equations of motion, and the physical properties of real solid materials. Some of the required links are quite obvious (e.g., the relationship between mass of the elements and elastic constant on one side, and material density and sound velocity on the other side), some others a priori are unclear, and additional hypotheses on them must be made (e.g., on the restitution coefficient of inelastic scattering). Despite the preliminary character of the model, we have obtained some interesting results, which appear to mimic in a realistic way the outcomes of actual impacts. For instance, we have observed the formation of craters and fractures, and (for high impact

  4. Beyond Modeling: All-Atom Olfactory Receptor Model Simulations

    Directory of Open Access Journals (Sweden)

    Peter C Lai

    2012-05-01

    Full Text Available Olfactory receptors (ORs are a type of GTP-binding protein-coupled receptor (GPCR. These receptors are responsible for mediating the sense of smell through their interaction with odor ligands. OR-odorant interactions marks the first step in the process that leads to olfaction. Computational studies on model OR structures can validate experimental functional studies as well as generate focused and novel hypotheses for further bench investigation by providing a view of these interactions at the molecular level. Here we have shown the specific advantages of simulating the dynamic environment that is associated with OR-odorant interactions. We present a rigorous methodology that ranges from the creation of a computationally-derived model of an olfactory receptor to simulating the interactions between an OR and an odorant molecule. Given the ubiquitous occurrence of GPCRs in the membranes of cells, we anticipate that our OR-developed methodology will serve as a model for the computational structural biology of all GPCRs.

  5. The birth of a dinosaur footprint: subsurface 3D motion reconstruction and discrete element simulation reveal track ontogeny.

    Science.gov (United States)

    Falkingham, Peter L; Gatesy, Stephen M

    2014-12-23

    Locomotion over deformable substrates is a common occurrence in nature. Footprints represent sedimentary distortions that provide anatomical, functional, and behavioral insights into trackmaker biology. The interpretation of such evidence can be challenging, however, particularly for fossil tracks recovered at bedding planes below the originally exposed surface. Even in living animals, the complex dynamics that give rise to footprint morphology are obscured by both foot and sediment opacity, which conceals animal-substrate and substrate-substrate interactions. We used X-ray reconstruction of moving morphology (XROMM) to image and animate the hind limb skeleton of a chicken-like bird traversing a dry, granular material. Foot movement differed significantly from walking on solid ground; the longest toe penetrated to a depth of ∼5 cm, reaching an angle of 30° below horizontal before slipping backward on withdrawal. The 3D kinematic data were integrated into a validated substrate simulation using the discrete element method (DEM) to create a quantitative model of limb-induced substrate deformation. Simulation revealed that despite sediment collapse yielding poor quality tracks at the air-substrate interface, subsurface displacements maintain a high level of organization owing to grain-grain support. Splitting the substrate volume along "virtual bedding planes" exposed prints that more closely resembled the foot and could easily be mistaken for shallow tracks. DEM data elucidate how highly localized deformations associated with foot entry and exit generate specific features in the final tracks, a temporal sequence that we term "track ontogeny." This combination of methodologies fosters a synthesis between the surface/layer-based perspective prevalent in paleontology and the particle/volume-based perspective essential for a mechanistic understanding of sediment redistribution during track formation.

  6. Structural diversity of the soluble trimers of the human amylin(20-29) peptide revealed by molecular dynamics simulations

    Science.gov (United States)

    Mo, Yuxiang; Lu, Yan; Wei, Guanghong; Derreumaux, Philippe

    2009-03-01

    The human islet amyloid polypeptide (hIAPP) or amylin is a 37-residue hormone found as amyloid deposits in pancreatic extracts of nearly all type 2 diabetes patients. The fragment 20-29 of sequence SNNFGAILSS (hIAPP20-29) has been shown to be responsible for the amyloidogenic propensities of the full length protein. Various polymorphic forms of hIAPP20-29 fibrils were described by using Fourier transform infrared (FTIR) and solid-state NMR experiments: unseeded hIAPP20-29 fibril with out-of-register antiparallel β-strands, and two forms of seeded hIAPP20-29 fibril, with in-register antiparallel or in-register parallel β-strands. As a first step toward understanding this polymorphism, we explore the equilibrium structures of the soluble hIAPP20-29 trimer, using multiple molecular dynamics (MD) simulations with the Optimized Potential for Efficient structure Prediction (OPEP) coarse-grained implicit solvent force field for a total length of 3.2 μs. Although, the trimer is found mainly random coil, consistent with the signal measured experimentally during the lag phase of hIAPP20-29 fibril formation, the central FGAIL residues have a relative high propensity to form interpeptide β-sheets and antiparallel β-strands are more probable than parallel β-strands. One MD-predicted out-of-register antiparallel three-stranded β-sheet matches exactly the FTIR-derived unseeded hIAPP20-29 fibril model. Our simulations, however, do not reveal any evidence of in-register parallel or in-register antiparallel β-sheets as reported for seeded hIAPP20-29 fibrils. All these results indicate that fibril polymorphism is partially encoded in a trimer.

  7. Simulation modeling of stratigraphic sequences along the Louisiana offshore

    Energy Technology Data Exchange (ETDEWEB)

    Kendall, C.G.S.C. (Univ. of South Carolina, Columbia (USA)); Lowrie, A.

    1990-09-01

    Sequence stratigraphic analysis of a representative (schematic) dip seismic section along the Louisiana offshore reveals 4th order (Milankovitch) sea-level cycles within 3rd order sequences. This representative line is characteristic of a dip section along the western area where progradation has exceeded subsidence by multifold since the upper Miocene, the last 6.7 m.y., and by twofold through the rest of the Miocene, back to at least 22 m.y. ago. Lowstands cause the outer shelf to act as a sediment bypass zone with shelf deposition during highstands. Salt-sediment interaction is isostatic, the adjustments occurring principally during lowstands. This interpreted stratigraphy has been simulated on an interactive computer program (SEDPAK) developed at the University of South Carolina. SEDPAK erects models of sedimentary geometries by filling in a two-dimensional basin from both sides with a combination of clastic sediment and/or in situ and transported carbonate sediments. Data inputs include the initial basin configuration, local tectonic behavior, sea-level curves, and the amount and source direction of clastic sediment as a function of water depth. The modeled geometries of clastic sediments evolve through time and respond to depositional processes that include tectonic movement, eustasy, sedimentation, sediment compaction, and isostatic response, sedimentary bypass, erosion, and deposition in various physiographic settings such as coastal plains, continental shelf, basin slope, and basin floor. The computer simulation allows for a quantification of the various processes noted and described in the interpretation. Sedimentation rates, isostatic adjustment, and tectonic movement are given in cm/year. Simulation modeling of sequence stratigraphy is seen as a next logical step in the quest for detailed and quantified interpretations.

  8. Aero-acoustic modeling using large eddy simulation

    DEFF Research Database (Denmark)

    Shen, Wen Zhong; Sørensen, Jens Nørkær

    2007-01-01

    The splitting technique for aero-acoustic computations is extended to simulate three-dimensional flow and acoustic waves from airfoils. The aero-acoustic model is coupled to a sub-grid-scale turbulence model for Large-Eddy Simulations. In the first test case, the model is applied to compute laminar...

  9. IDEF method-based simulation model design and development framework

    Directory of Open Access Journals (Sweden)

    Ki-Young Jeong

    2009-09-01

    Full Text Available The purpose of this study is to provide an IDEF method-based integrated framework for a business process simulation model to reduce the model development time by increasing the communication and knowledge reusability during a simulation project. In this framework, simulation requirements are collected by a function modeling method (IDEF0 and a process modeling method (IDEF3. Based on these requirements, a common data model is constructed using the IDEF1X method. From this reusable data model, multiple simulation models are automatically generated using a database-driven simulation model development approach. The framework is claimed to help both requirement collection and experimentation phases during a simulation project by improving system knowledge, model reusability, and maintainability through the systematic use of three descriptive IDEF methods and the features of the relational database technologies. A complex semiconductor fabrication case study was used as a testbed to evaluate and illustrate the concepts and the framework. Two different simulation software products were used to develop and control the semiconductor model from the same knowledge base. The case study empirically showed that this framework could help improve the simulation project processes by using IDEF-based descriptive models and the relational database technology. Authors also concluded that this framework could be easily applied to other analytical model generation by separating the logic from the data.

  10. Simulation Modeling of a Facility Layout in Operations Management Classes

    Science.gov (United States)

    Yazici, Hulya Julie

    2006-01-01

    Teaching quantitative courses can be challenging. Similarly, layout modeling and lean production concepts can be difficult to grasp in an introductory OM (operations management) class. This article describes a simulation model developed in PROMODEL to facilitate the learning of layout modeling and lean manufacturing. Simulation allows for the…

  11. Maneuver simulation model of an experimental hovercraft for the Antarctic

    Science.gov (United States)

    Murao, Rinichi

    Results of an investigation of a hovercraft model designed for Antarctic conditions are presented. The buoyancy characteristics, the propellant control system, and simulation model control are examined. An ACV (air cushion vehicle) model of the hovercraft is used to examine the flexibility and friction of the skirt. Simulation results are presented which show the performance of the hovercraft.

  12. Quantification of Modelling Uncertainties in Turbulent Flow Simulations

    NARCIS (Netherlands)

    Edeling, W.N.

    2015-01-01

    The goal of this thesis is to make predictive simulations with Reynolds-Averaged Navier-Stokes (RANS) turbulence models, i.e. simulations with a systematic treatment of model and data uncertainties and their propagation through a computational model to produce predictions of quantities of interest w

  13. Quantification of Modelling Uncertainties in Turbulent Flow Simulations

    NARCIS (Netherlands)

    Edeling, W.N.

    2015-01-01

    The goal of this thesis is to make predictive simulations with Reynolds-Averaged Navier-Stokes (RANS) turbulence models, i.e. simulations with a systematic treatment of model and data uncertainties and their propagation through a computational model to produce predictions of quantities of interest

  14. Simulation Modeling of a Facility Layout in Operations Management Classes

    Science.gov (United States)

    Yazici, Hulya Julie

    2006-01-01

    Teaching quantitative courses can be challenging. Similarly, layout modeling and lean production concepts can be difficult to grasp in an introductory OM (operations management) class. This article describes a simulation model developed in PROMODEL to facilitate the learning of layout modeling and lean manufacturing. Simulation allows for the…

  15. Historical Development of Simulation Models of Recreation Use

    Science.gov (United States)

    Jan W. van Wagtendonk; David N. Cole

    2005-01-01

    The potential utility of modeling as a park and wilderness management tool has been recognized for decades. Romesburg (1974) explored how mathematical decision modeling could be used to improve decisions about regulation of wilderness use. Cesario (1975) described a computer simulation modeling approach that utilized GPSS (General Purpose Systems Simulator), a...

  16. A simulation model of a star computer network

    CERN Document Server

    Gomaa, H

    1979-01-01

    A simulation model of the CERN (European Organization for Nuclear Research) SPS star computer network is described. The model concentrates on simulating the message handling computer, through which all messages in the network pass. The implementation of the model and its calibration are also described. (6 refs).

  17. Water Yield and Sediment Yield Simulations for Teba Catchment in Spain Using SWRRB Model: Ⅰ. Model Input and Simulation Experiment

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Water yield and sediment yield in the Teba catchment, Spain, were simulated using SWRRB (Simulator for Water Resources in Rural Basins) model. The model is composed of 198 mathematical equations. About 120 items (variables) were input for the simulation, including meteorological and climatic factors, hydrologic factors, topographic factors, parent materials, soils, vegetation, human activities, etc. The simulated results involved surface runoff, subsurface runoff, sediment, peak flow, evapotranspiration, soil water, total biomass,etc. Careful and thorough input data preparation and repeated simulation experiments are the key to get the accurate results. In this work the simulation accuracy for annual water yield prediction reached to 83.68%.``

  18. Four Models of In Situ Simulation

    DEFF Research Database (Denmark)

    Musaeus, Peter; Krogh, Kristian; Paltved, Charlotte

    2014-01-01

    that there are four fruitful approaches to in situ simulation: (1) In situ simulation informed by reported critical incidents and adverse events from emergency departments (ED) in which team training is about to be conducted to write scenarios. (2) In situ simulation through ethnographic studies at the ED. (3) Using...... prewritten scenarios from the simulation lab and transferring them to in situ simulation. (4) Action research – insider or participant action research to obtain in-depth understanding of team processes to guide scenario design. We evaluate the approach relying on Marks’ et al. taxonomy that posits...... the following processes: Transition processes, Action processes and Interpersonal processes. Design and purpose This abstract suggests four approaches to in situ simulation. A pilot study will evaluate the different approaches in two emergency departments in the Central Region of Denmark. Methods The typology...

  19. A New Model for Simulating TSS Washoff in Urban Areas

    Directory of Open Access Journals (Sweden)

    E. Crobeddu

    2011-01-01

    Full Text Available This paper presents the formulation and validation of the conceptual Runoff Quality Simulation Model (RQSM that was developed to simulate the erosion and transport of solid particles in urban areas. The RQSM assumes that solid particle accumulation on pervious and impervious areas is infinite. The RQSM simulates soil erosion using rainfall kinetic energy and solid particle transport with linear system theory. A sensitivity analysis was conducted on the RQSM to show the influence of each parameter on the simulated load. Total suspended solid (TSS loads monitored at the outlet of the borough of Verdun in Canada and at three catchment outlets of the City of Champaign in the United States were used to validate the RQSM. TSS loads simulated by the RQSM were compared to measured loads and to loads simulated by the Rating Curve model and the Exponential model of the SWMM software. The simulation performance of the RQSM was comparable to the Exponential and Rating Curve models.

  20. An Integrated Approach to Flexible Modelling and Animated Simulation

    Institute of Scientific and Technical Information of China (English)

    Li Shuliang; Wu Zhenye

    1994-01-01

    Based on the software support of SIMAN/CINEMA, this paper presents an integrated approach to flexible modelling and simulation with animation. The methodology provides a structured way of integrating mathematical and logical model, statistical experinentation, and statistical analysis with computer animation. Within this methodology, an animated simulation study is separated into six different activities: simulation objectives identification , system model development, simulation experiment specification, animation layout construction, real-time simulation and animation run, and output data analysis. These six activities are objectives driven, relatively independent, and integrate through software organization and simulation files. The key ideas behind this methodology are objectives orientation, modelling flexibility,simulation and animation integration, and application tailorability. Though the methodology is closely related to SIMAN/CINEMA, it can be extended to other software environments.

  1. Evaluation of Marine Corps Manpower Computer Simulation Model

    Science.gov (United States)

    2016-12-01

    MARINE CORPS MANPOWER COMPUTER SIMULATION MODEL by Eric S. Anderson December 2016 Thesis Advisor: Arnold Buss Second Reader: Neil Rowe...Master’s thesis 4. TITLE AND SUBTITLE EVALUATION OF MARINE CORPS MANPOWER COMPUTER SIMULATION MODEL 5. FUNDING NUMBERS ACCT: 622716 JON...overall end strength are maintained. To assist their mission, an agent-based computer simulation model was developed in the Java computer language

  2. Business Process Simulation: Requirements for Business and Resource Models

    Directory of Open Access Journals (Sweden)

    Audrius Rima

    2015-07-01

    Full Text Available The purpose of Business Process Model and Notation (BPMN is to provide easily understandable graphical representation of business process. Thus BPMN is widely used and applied in various areas one of them being a business process simulation. This paper addresses some BPMN model based business process simulation problems. The paper formulate requirements for business process and resource models in enabling their use for business process simulation.

  3. Discrete Event Simulation Modeling and Analysis of Key Leader Engagements

    Science.gov (United States)

    2012-06-01

    SIMULATION MODELING AND ANALYSIS OF KEY LEADER ENGAGEMENTS by Clifford C. Wakeman June 2012 Thesis Co-Advisors: Arnold H. Buss Susan...DATE June 2012 3. REPORT TYPE AND DATES COVERED Master’s Thesis 4. TITLE AND SUBTITLE Discrete Event Simulation Modeling and Analysis of Key...for public release; distribution is unlimited DISCRETE EVENT SIMULATION MODELING AND ANALYSIS OF KEY LEADER ENGAGEMENTS Clifford C. Wakeman

  4. The COD Model: Simulating Workgroup Performance

    Science.gov (United States)

    Biggiero, Lucio; Sevi, Enrico

    Though the question of the determinants of workgroup performance is one of the most central in organization science, precise theoretical frameworks and formal demonstrations are still missing. In order to fill in this gap the COD agent-based simulation model is here presented and used to study the effects of task interdependence and bounded rationality on workgroup performance. The first relevant finding is an algorithmic demonstration of the ordering of interdependencies in terms of complexity, showing that the parallel mode is the most simplex, followed by the sequential and then by the reciprocal. This result is far from being new in organization science, but what is remarkable is that now it has the strength of an algorithmic demonstration instead of being based on the authoritativeness of some scholar or on some episodic empirical finding. The second important result is that the progressive introduction of realistic limits to agents' rationality dramatically reduces workgroup performance and addresses to a rather interesting result: when agents' rationality is severely bounded simple norms work better than complex norms. The third main finding is that when the complexity of interdependence is high, then the appropriate coordination mechanism is agents' direct and active collaboration, which means teamwork.

  5. Diversity modelling for electrical power system simulation

    Science.gov (United States)

    Sharip, R. M.; Abu Zarim, M. A. U. A.

    2013-12-01

    This paper considers diversity of generation and demand profiles against the different future energy scenarios and evaluates these on a technical basis. Compared to previous studies, this research applied a forecasting concept based on possible growth rates from publically electrical distribution scenarios concerning the UK. These scenarios were created by different bodies considering aspects such as environment, policy, regulation, economic and technical. In line with these scenarios, forecasting is on a long term timescale (up to every ten years from 2020 until 2050) in order to create a possible output of generation mix and demand profiles to be used as an appropriate boundary condition for the network simulation. The network considered is a segment of rural LV populated with a mixture of different housing types. The profiles for the 'future' energy and demand have been successfully modelled by applying a forecasting method. The network results under these profiles shows for the cases studied that even though the value of the power produced from each Micro-generation is often in line with the demand requirements of an individual dwelling there will be no problems arising from high penetration of Micro-generation and demand side management for each dwellings considered. The results obtained highlight the technical issues/changes for energy delivery and management to rural customers under the future energy scenarios.

  6. Analyzing, Modeling, and Simulation for Human Dynamics in Social Network

    Directory of Open Access Journals (Sweden)

    Yunpeng Xiao

    2012-01-01

    Full Text Available This paper studies the human behavior in the top-one social network system in China (Sina Microblog system. By analyzing real-life data at a large scale, we find that the message releasing interval (intermessage time obeys power law distribution both at individual level and at group level. Statistical analysis also reveals that human behavior in social network is mainly driven by four basic elements: social pressure, social identity, social participation, and social relation between individuals. Empirical results present the four elements' impact on the human behavior and the relation between these elements. To further understand the mechanism of such dynamic phenomena, a hybrid human dynamic model which combines “interest” of individual and “interaction” among people is introduced, incorporating the four elements simultaneously. To provide a solid evaluation, we simulate both two-agent and multiagent interactions with real-life social network topology. We achieve the consistent results between empirical studies and the simulations. The model can provide a good understanding of human dynamics in social network.

  7. Long-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulation.

    Science.gov (United States)

    Sutthibutpong, Thana; Matek, Christian; Benham, Craig; Slade, Gabriel G; Noy, Agnes; Laughton, Charles; K Doye, Jonathan P; Louis, Ard A; Harris, Sarah A

    2016-11-02

    It is well established that gene regulation can be achieved through activator and repressor proteins that bind to DNA and switch particular genes on or off, and that complex metabolic networks determine the levels of transcription of a given gene at a given time. Using three complementary computational techniques to study the sequence-dependence of DNA denaturation within DNA minicircles, we have observed that whenever the ends of the DNA are constrained, information can be transferred over long distances directly by the transmission of mechanical stress through the DNA itself, without any requirement for external signalling factors. Our models combine atomistic molecular dynamics (MD) with coarse-grained simulations and statistical mechanical calculations to span three distinct spatial resolutions and timescale regimes. While they give a consensus view of the non-locality of sequence-dependent denaturation in highly bent and supercoiled DNA loops, each also reveals a unique aspect of long-range informational transfer that occurs as a result of restraining the DNA within the closed loop of the minicircles. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

  8. Graph model of behavior simulator. [Interactive simulator developed as part of UCLA SARA system

    Energy Technology Data Exchange (ETDEWEB)

    Razouk, R.R.; Estrin, G.

    1966-01-01

    An interactive simulator developed at UCLA as part of the SARA system is described. This simulator, in conjunction with other design tools of the SARA system, allows the user to model the behavior of the system being designed at various levels of detail. The models which drive the simulator are control graphs and associated data graphs. The simulator uses the control graph to express synchronization of sequences of events. Initiation of any control node triggers the simulator to call on the data graph model to provide interpretation of a process at a desired level of abstraction. The simulator gives the user the capability to examine, or modify, the state of the control and data graphs during a simulation. 8 figures.

  9. Modeling, Simulation and Position Control of 3DOF Articulated Manipulator

    Directory of Open Access Journals (Sweden)

    Hossein Sadegh Lafmejani

    2014-08-01

    Full Text Available In this paper, the modeling, simulation and control of 3 degrees of freedom articulated robotic manipulator have been studied. First, we extracted kinematics and dynamics equations of the mentioned manipulator by using the Lagrange method. In order to validate the analytical model of the manipulator we compared the model simulated in the simulation environment of Matlab with the model was simulated with the SimMechanics toolbox. A sample path has been designed for analyzing the tracking subject. The system has been linearized with feedback linearization and then a PID controller was applied to track a reference trajectory. Finally, the control results have been compared with a nonlinear PID controller.

  10. A simulation model for Carson Ice Co-Generation Facility

    Energy Technology Data Exchange (ETDEWEB)

    Lee, N.K.W.; Elmasri, M. [Thermoflow, Inc., Wellesley, MA (United States); Brownell, G. [SMUD, Sacramento, CA (United States)

    1995-12-31

    The paper describes a software system to simulate the performance of the Carson Ice Co-gen Facility operated by the Carson Energy Group. This 100 MW plant consists of a cogeneration combined cycle and a simple cycle unit powered by LM6000 gas turbine generators. Features of the system include inlet heating/absorption chilling for the gas turbines, supplementary firing capability, and a broad range of steam turbine extractions and admissions. The software enables the operator to model complex operating scenarios. It predicts technical and economic performance under a wide range of conditions, taking into account various equipment constraints and operation preferences. For any set of user-specified operating inputs, the corresponding heat and mass balance diagrams as well as economic figures may be viewed virtually instantaneously. Interactive plots of plant heat rate, incremental heat rate, operating income, and other parameters reveal issues and trade-offs involved in performance and economic optimization.

  11. The fractional-nonlinear robotic manipulator: Modeling and dynamic simulations

    Science.gov (United States)

    David, S. A.; Balthazar, J. M.; Julio, B. H. S.; Oliveira, C.

    2012-11-01

    In this paper, we applied the Riemann-Liouville approach and the fractional Euler-Lagrange equations in order to obtain the fractional-order nonlinear dynamics equations of a two link robotic manipulator. The aformentioned equations have been simulated for several cases involving: integer and non-integer order analysis, with and without external forcing acting and some different initial conditions. The fractional nonlinear governing equations of motion are coupled and the time evolution of the angular positions and the phase diagrams have been plotted to visualize the effect of fractional order approach. The new contribution of this work arises from the fact that the dynamics equations of a two link robotic manipulator have been modeled with the fractional Euler-Lagrange dynamics approach. The results reveal that the fractional-nonlinear robotic manipulator can exhibit different and curious behavior from those obtained with the standard dynamical system and can be useful for a better understanding and control of such nonlinear systems.

  12. Dynamical Transition of Myoglobin and Cu/Zn Superoxide Dismutase Revealed by Molecular Dynamics Simulation

    Institute of Scientific and Technical Information of China (English)

    张莉莉; 张建华; 周林祥

    2002-01-01

    We have carried out parallel molecular dynamics simulations of solvated and non-solvated myoglobin and solvated Cu/Zn superoxide dismutase at different temperatures. By analysis of several methods, the simulations reproduce the quasielastic neutron scattering experimental results. Below 200 K these two proteins behave as harmonic solids with essentially only vibrational motion, while above this temperature, there is a striking dynamic transition into anharmonic motion. Moreover, the simulations further show that water molecules play an important role for this dynamical transition. There is no such sharp dynamical transition in non-solvated proteins and the higher the solvate density is, the steeper at transition point the curve of mean square displacement versus temperature will be. The simulations also display that the dynamical transition is a general property for globular protein and this transition temperature is a demarcation of enzyme activity.

  13. Non-Stationary Modelling and Simulation of Near-Source Earthquake Ground Motion

    DEFF Research Database (Denmark)

    Skjærbæk, P. S.; Kirkegaard, Poul Henning; Fouskitakis, G. N.

    This paper is concerned with modelling and simulation of near-source earthquake ground motion. Recent studies have revealed that these motions show heavy non-stationary behaviour with very low frequencies dominating parts of the earthquake sequence. Modelling and simulation of this behaviour...... by an epicentral distance of 16 km and measured during the 1979 Imperial valley earthquake in California (USA). The results of the study indicate that while all three approaches can succesfully predict near-source ground motions, the Neural Network based one gives somewhat poorer simulation results....

  14. Non-Stationary Modelling and Simulation of Near-Source Earthquake Ground Motion

    DEFF Research Database (Denmark)

    Skjærbæk, P. S.; Kirkegaard, Poul Henning; Fouskitakis, G. N.

    1997-01-01

    This paper is concerned with modelling and simulation of near-source earthquake ground motion. Recent studies have revealed that these motions show heavy non-stationary behaviour with very low frequencies dominating parts of the earthquake sequence. Modeling and simulation of this behaviour...... by an epicentral distance of 16 km and measured during the 1979 Imperial Valley earthquake in California (U .S .A.). The results of the study indicate that while all three approaches can successfully predict near-source ground motions, the Neural Network based one gives somewhat poorer simulation results....

  15. Runoff Simulation of Shitoukoumen Reservoir Basin Based on SWAT Model

    Institute of Scientific and Technical Information of China (English)

    XIE; Miao; LI; Hong-yan; LIU; Tie-juan; RU; Shi-rong

    2012-01-01

    [Objective]The study aimed to simulate the runoff of Shitoukoumen Reservoir basin by using SWAT model. [Method] Based on DEM elevation, land use type, soil type and hydrometeorological data, SWAT model, a distributed hydrological model was established to simulate the monthly runoff of Shitoukoumen Reservoir basin, and the years 2006 and 2010 were chosen as the calibration and validation period respectively. [Result] The simulation results indicated that SWAT model could be used to simulate the runoff of Shitoukoumen Reservoir basin, and the simulation effect was good. However, the response of the model to local rainstorm was not obvious, so that the actual runoff in June and July of 2010 was abnormally higher than the simulation value. [Conclusion] The research could provide theoretical references for the plan and management of water resources in Shitoukoumen Reservoir basin in future.

  16. A model for educational simulation of infant cardiovascular physiology.

    Science.gov (United States)

    Goodwin, Jane A; van Meurs, Willem L; Sá Couto, Carla D; Beneken, Jan E W; Graves, Shirley A

    2004-12-01

    Full-body patient simulators provide the technology and the environment necessary for excellent clinical education while eliminating risk to the patient. The extension of simulator-based training into management of basic and critical situations in complex patient populations is natural. We describe the derivation of an infant cardiovascular model through the redefinition of a complete set of parameters for an existing adult model. Specifically, we document a stepwise parameter estimation process, explicit simplifying assumptions, and sources for these parameters. The simulated vital signs are within the target hemodynamic variables, and the simulated systemic arterial pressure wave form and left ventricular pressure volume loop are realistic. The system reacts appropriately to blood loss, and incorporation of aortic stenosis is straightforward. This infant cardiovascular model can form the basis for screen-based educational simulations. The model is also an essential step in attaining a full-body, model-driven infant simulator.

  17. Evolution: Ocean Models Reveal Life in Deep Seas.

    Science.gov (United States)

    Eizaguirre, Christophe

    2016-09-26

    Even though the deep sea represents the largest area in the world, evolution of species from those environments remains largely unstudied. A series of recent papers indicate that combining molecular tools with biophysical models can help us resolve some of these deep mysteries.

  18. Qualitative and Quantitative Integrated Modeling for Stochastic Simulation and Optimization

    Directory of Open Access Journals (Sweden)

    Xuefeng Yan

    2013-01-01

    Full Text Available The simulation and optimization of an actual physics system are usually constructed based on the stochastic models, which have both qualitative and quantitative characteristics inherently. Most modeling specifications and frameworks find it difficult to describe the qualitative model directly. In order to deal with the expert knowledge, uncertain reasoning, and other qualitative information, a qualitative and quantitative combined modeling specification was proposed based on a hierarchical model structure framework. The new modeling approach is based on a hierarchical model structure which includes the meta-meta model, the meta-model and the high-level model. A description logic system is defined for formal definition and verification of the new modeling specification. A stochastic defense simulation was developed to illustrate how to model the system and optimize the result. The result shows that the proposed method can describe the complex system more comprehensively, and the survival probability of the target is higher by introducing qualitative models into quantitative simulation.

  19. Mechanistic species distribution modeling reveals a niche shift during invasion.

    Science.gov (United States)

    Chapman, Daniel S; Scalone, Romain; Štefanić, Edita; Bullock, James M

    2017-06-01

    Niche shifts of nonnative plants can occur when they colonize novel climatic conditions. However, the mechanistic basis for niche shifts during invasion is poorly understood and has rarely been captured within species distribution models. We quantified the consequence of between-population variation in phenology for invasion of common ragweed (Ambrosia artemisiifolia L.) across Europe. Ragweed is of serious concern because of its harmful effects as a crop weed and because of its impact on public health as a major aeroallergen. We developed a forward mechanistic species distribution model based on responses of ragweed development rates to temperature and photoperiod. The model was parameterized and validated from the literature and by reanalyzing data from a reciprocal common garden experiment in which native and invasive populations were grown within and beyond the current invaded range. It could therefore accommodate between-population variation in the physiological requirements for flowering, and predict the potentially invaded ranges of individual populations. Northern-origin populations that were established outside the generally accepted climate envelope of the species had lower thermal requirements for bud development, suggesting local adaptation of phenology had occurred during the invasion. The model predicts that this will extend the potentially invaded range northward and increase the average suitability across Europe by 90% in the current climate and 20% in the future climate. Therefore, trait variation observed at the population scale can trigger a climatic niche shift at the biogeographic scale. For ragweed, earlier flowering phenology in established northern populations could allow the species to spread beyond its current invasive range, substantially increasing its risk to agriculture and public health. Mechanistic species distribution models offer the possibility to represent niche shifts by varying the traits and niche responses of individual

  20. Theory, modeling and simulation of superconducting qubits

    Energy Technology Data Exchange (ETDEWEB)

    Berman, Gennady P [Los Alamos National Laboratory; Kamenev, Dmitry I [Los Alamos National Laboratory; Chumak, Alexander [INSTIT OF PHYSICS, KIEV; Kinion, Carin [LLNL; Tsifrinovich, Vladimir [POLYTECHNIC INSTIT OF NYU

    2011-01-13

    We analyze the dynamics of a qubit-resonator system coupled with a thermal bath and external electromagnetic fields. Using the evolution equations for the set of Heisenberg operators that describe the whole system, we derive an expression for the resonator field, that includes the resonator-drive, the resonator-bath, and resonator-qubit interactions. The renormalization of the resonator frequency, caused by the qubit-resonator interaction, is accounted for. Using the solutions for the resonator field, we derive the equation that describes the qubit dynamics. The dependence of the qubit evolution during the measurement time on the fidelity of a single-shot measurement is studied. The relation between the fidelity and measurement time is shown explicitly. We proposed a novel adiabatic method for the phase qubit measurement. The method utilizes a low-frequency, quasi-classical resonator inductively coupled to the qubit. The resonator modulates the qubit energy, and the back reaction of the qubit causes a shift in the phase of the resonator. The resonator phase shift can be used to determine the qubit state. We have simulated this measurement taking into the account the energy levels outside the phase qubit manifold. We have shown that, for qubit frequencies in the range of 8-12GHZ, a resonator frequency of 500 MHz and a measurement time of 100 ns, the phase difference between the two qubit states is greater than 0.2 rad. This phase difference exceeds the measurement uncertainty, and can be detected using a classical phase-meter. A fidelity of 0.9999 can be achieved for a relaxation time of 0.5 ms. We also model and simulate a microstrip-SQUID amplifier of frequency about 500 MHz, which could be used to amplify the resonator oscillations in the phase qubit adiabatic measurement. The voltage gain and the amplifier noise temperature are calculated. We simulate the preparation of a generalized Bell state and compute the relaxation times required for achieving high

  1. Theory, modeling and simulation of superconducting qubits

    Energy Technology Data Exchange (ETDEWEB)

    Berman, Gennady P [Los Alamos National Laboratory; Kamenev, Dmitry I [Los Alamos National Laboratory; Chumak, Alexander [INSTIT OF PHYSICS, KIEV; Kinion, Carin [LLNL; Tsifrinovich, Vladimir [POLYTECHNIC INSTIT OF NYU

    2011-01-13

    We analyze the dynamics of a qubit-resonator system coupled with a thermal bath and external electromagnetic fields. Using the evolution equations for the set of Heisenberg operators that describe the whole system, we derive an expression for the resonator field, that includes the resonator-drive, the resonator-bath, and resonator-qubit interactions. The renormalization of the resonator frequency, caused by the qubit-resonator interaction, is accounted for. Using the solutions for the resonator field, we derive the equation that describes the qubit dynamics. The dependence of the qubit evolution during the measurement time on the fidelity of a single-shot measurement is studied. The relation between the fidelity and measurement time is shown explicitly. We proposed a novel adiabatic method for the phase qubit measurement. The method utilizes a low-frequency, quasi-classical resonator inductively coupled to the qubit. The resonator modulates the qubit energy, and the back reaction of the qubit causes a shift in the phase of the resonator. The resonator phase shift can be used to determine the qubit state. We have simulated this measurement taking into the account the energy levels outside the phase qubit manifold. We have shown that, for qubit frequencies in the range of 8-12GHZ, a resonator frequency of 500 MHz and a measurement time of 100 ns, the phase difference between the two qubit states is greater than 0.2 rad. This phase difference exceeds the measurement uncertainty, and can be detected using a classical phase-meter. A fidelity of 0.9999 can be achieved for a relaxation time of 0.5 ms. We also model and simulate a microstrip-SQUID amplifier of frequency about 500 MHz, which could be used to amplify the resonator oscillations in the phase qubit adiabatic measurement. The voltage gain and the amplifier noise temperature are calculated. We simulate the preparation of a generalized Bell state and compute the relaxation times required for achieving high

  2. FUZZY MODEL FOR TWO-DIMENSIONAL RIVER WATER QUALITY SIMULATION UNDER SUDDEN POLLUTANTS DISCHARGED

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Based on the fuzziness and impreciseness of water environmental system, the fuzzy arithmetic was used to simulate the fuzzy and imprecise relations in modeling river water quality. By defining the parameters of water quality model as symmetrical triangular fuzzy numbers, a two-dimensional fuzzy water quality model for sudden pollutant discharge is established. From the fuzzy model, the pollutant concentrations, corresponding to the specified confidence level of α, can be obtained by means of the α-cut technique and arithmetic operations of triangular fuzzy numbers. Study results reveal that it is feasible in theory and reliable on calculation applying triangular fuzzy numbers to the simulation of river water quality.

  3. MODEL OF HEAT SIMULATOR FOR DATA CENTERS

    Directory of Open Access Journals (Sweden)

    Jan Novotný

    2016-08-01

    Full Text Available The aim of this paper is to present a design and a development of a heat simulator, which will be used for a flow research in data centers. The designed heat simulator is based on an ideological basis of four-processor 1U Supermicro server. The designed heat simulator enables to control the flow and heat output within the range of 10–100 %. The paper covers also the results of testing measurements of mass flow rates and heat flow rates in the simulator. The flow field at the outlet of the server was measured by the stereo PIV method. The heat flow rate was determined, based on measuring the temperature field at the inlet and outlet of the simulator and known mass flow rate.

  4. Research on system architecture of modeling and simulation

    Institute of Scientific and Technical Information of China (English)

    WANG Jiangyun; WANG Xingren

    2007-01-01

    The modeling and simulation(M&S)architecture describes and defines the relationship between the difeerent parts of a simulation.The simulation system architecture and simulation support platform architecture are discussed separately.The simulation support platform architecture consists of the management layer,the resource layer,the communication layer,the application layer and the infrastructure layer.The best Wav is to design and realize the M&S collaborative environment for simulation support platform in the resource-communication-application three-dimension space.

  5. Relative importance of secondary settling tank models in WWTP simulations

    DEFF Research Database (Denmark)

    Ramin, Elham; Flores-Alsina, Xavier; Sin, Gürkan

    2012-01-01

    Results obtained in a study using the Benchmark Simulation Model No. 1 (BSM1) show that a one-dimensional secondary settling tank (1-D SST) model structure and its parameters are among the most significant sources of uncertainty in wastewater treatment plant (WWTP) simulations [Ramin et al., 2011......]. The sensitivity results consistently indicate that the prediction of sludge production is most sensitive to the variation of the settling parameters. In the present study, we use the Benchmark Simulation Model No. 2 (BSM2), a plant-wide benchmark, that combines the Activated Sludge Model No. 1 (ASM1......) with the Anaerobic Digestion Model No. 1 (ADM1). We use BSM2 as a vehicle to compare two different 1-D SST models, and to assess the relative significance of their performance on WWTP simulation model outputs. The two 1-D SST models assessed include the firstorder model by Takács et al. [1991] and the second...

  6. Application of blocking diagnosis methods to general circulation models. Part II: model simulations

    Energy Technology Data Exchange (ETDEWEB)

    Barriopedro, D.; Trigo, R.M. [Universidade de Lisboa, CGUL-IDL, Faculdade de Ciencias, Lisbon (Portugal); Garcia-Herrera, R.; Gonzalez-Rouco, J.F. [Universidad Complutense de Madrid, Departamento de Fisica de la Tierra II, Facultad de C.C. Fisicas, Madrid (Spain)

    2010-12-15

    A previously defined automatic method is applied to reanalysis and present-day (1950-1989) forced simulations of the ECHO-G model in order to assess its performance in reproducing atmospheric blocking in the Northern Hemisphere. Unlike previous methodologies, critical parameters and thresholds to estimate blocking occurrence in the model are not calibrated with an observed reference, but objectively derived from the simulated climatology. The choice of model dependent parameters allows for an objective definition of blocking and corrects for some intrinsic model bias, the difference between model and observed thresholds providing a measure of systematic errors in the model. The model captures reasonably the main blocking features (location, amplitude, annual cycle and persistence) found in observations, but reveals a relative southward shift of Eurasian blocks and an overall underestimation of blocking activity, especially over the Euro-Atlantic sector. Blocking underestimation mostly arises from the model inability to generate long persistent blocks with the observed frequency. This error is mainly attributed to a bias in the basic state. The bias pattern consists of excessive zonal winds over the Euro-Atlantic sector and a southward shift at the exit zone of the jet stream extending into in the Eurasian continent, that are more prominent in cold and warm seasons and account for much of Euro-Atlantic and Eurasian blocking errors, respectively. It is shown that other widely used blocking indices or empirical observational thresholds may not give a proper account of the lack of realism in the model as compared with the proposed method. This suggests that in addition to blocking changes that could be ascribed to natural variability processes or climate change signals in the simulated climate, attention should be paid to significant departures in the diagnosis of phenomena that can also arise from an inappropriate adaptation of detection methods to the climate of the

  7. Sediment flux modeling: Simulating nitrogen, phosphorus, and silica cycles

    Science.gov (United States)

    Testa, Jeremy M.; Brady, Damian C.; Di Toro, Dominic M.; Boynton, Walter R.; Cornwell, Jeffrey C.; Kemp, W. Michael

    2013-10-01

    Sediment-water exchanges of nutrients and oxygen play an important role in the biogeochemistry of shallow coastal environments. Sediments process, store, and release particulate and dissolved forms of carbon and nutrients and sediment-water solute fluxes are significant components of nutrient, carbon, and oxygen cycles. Consequently, sediment biogeochemical models of varying complexity have been developed to understand the processes regulating porewater profiles and sediment-water exchanges. We have calibrated and validated a two-layer sediment biogeochemical model (aerobic and anaerobic) that is suitable for application as a stand-alone tool or coupled to water-column biogeochemical models. We calibrated and tested a stand-alone version of the model against observations of sediment-water flux, porewater concentrations, and process rates at 12 stations in Chesapeake Bay during a 4-17 year period. The model successfully reproduced sediment-water fluxes of ammonium (NH4+), nitrate (NO3-), phosphate (PO43-), and dissolved silica (Si(OH)4 or DSi) for diverse chemical and physical environments. A root mean square error (RMSE)-minimizing optimization routine was used to identify best-fit values for many kinetic parameters. The resulting simulations improved the performance of the model in Chesapeake Bay and revealed (1) the need for an aerobic-layer denitrification formulation to account for NO3- reduction in this zone, (2) regional variability in denitrification that depends on oxygen levels in the overlying water, (3) a regionally-dependent solid-solute PO43- partitioning that accounts for patterns in Fe availability, and (4) a simplified model formulation for DSi, including limited sorption of DSi onto iron oxyhydroxides. This new calibration balances the need for a universal set of parameters that remain true to biogeochemical processes with site-specificity that represents differences in physical conditions. This stand-alone model can be rapidly executed on a

  8. Modeling and Simulation of In Vivo Drug Effects.

    Science.gov (United States)

    Lippert, Jörg; Burghaus, Rolf; Kuepfer, Lars; Ploeger, Bart; Schaller, Stephan; Schmitt, Walter; Willmann, Stefan

    2016-01-01

    The concept of a pharmacokinetics-pharmacodynamics (PK/PD) assessment of drug development candidates is well established in pharmaceutical research and development, and PK/PD modeling is common practice in all pharmaceutical companies. A recent analysis (Morgan et al., Drug Discov Today 17(9-10):419-424, 2012) revealed however that insufficient certainty in the integrity of the causal chain of fundamental pharmacological steps from drug dosing through systemic exposure, target tissue exposure, and engagement of molecular target to pharmacological response is still the major driver of failure in phase II of clinical drug development. Despite the rise of molecular biomarkers, ethical, scientific, and practical constraints very often still prevent a direct assessment of each necessary step ultimately leading to an intended drug effect or an unintended adverse reaction. Yet, incomplete investigation of the causality of drug responses is a major risk for translational assessments and the prediction of drug responses in different species or other populations. Mechanism-based modeling and simulation (M&S) offers a means to investigate complex physiological and pharmacological processes and to complement experimental data for non-accessible steps in the pharmacological causal chain. With the help of two examples, it is illustrated, what level of physiological detail, state-of-the-art models can represent, how predictive these models are and how mechanism-based approaches can be combined with empirical correlation-based concepts.

  9. On-line simulations of models for backward masking.

    Science.gov (United States)

    Francis, Gregory

    2003-11-01

    Five simulations of quantitative models of visual backward masking are available on the Internet at http://www.psych.purdue.edu/-gfrancis/Publications/BackwardMasking/. The simulations can be run in a Web browser that supports the Java programming language. This article describes the motivation for making the simulations available and gives a brief introduction as to how the simulations are used. The source code is available on the Web page, and this article describes how the code is organized.

  10. Theory of compressive modeling and simulation

    Science.gov (United States)

    Szu, Harold; Cha, Jae; Espinola, Richard L.; Krapels, Keith

    2013-05-01

    Modeling and Simulation (M&S) has been evolving along two general directions: (i) data-rich approach suffering the curse of dimensionality and (ii) equation-rich approach suffering computing power and turnaround time. We suggest a third approach. We call it (iii) compressive M&S (CM&S); because the basic Minimum Free-Helmholtz Energy (MFE) facilitating CM&S can reproduce and generalize Candes, Romberg, Tao & Donoho (CRT&D) Compressive Sensing (CS) paradigm as a linear Lagrange Constraint Neural network (LCNN) algorithm. CM&S based MFE can generalize LCNN to 2nd order as Nonlinear augmented LCNN. For example, during the sunset, we can avoid a reddish bias of sunlight illumination due to a long-range Rayleigh scattering over the horizon. With CM&S we can take instead of day camera, a night vision camera. We decomposed long wave infrared (LWIR) band with filter into 2 vector components (8~10μm and 10~12μm) and used LCNN to find pixel by pixel the map of Emissive-Equivalent Planck Radiation Sources (EPRS). Then, we up-shifted consistently, according to de-mixed sources map, to the sub-micron RGB color image. Moreover, the night vision imaging can also be down-shifted at Passive Millimeter Wave (PMMW) imaging, suffering less blur owing to dusty smokes scattering and enjoying apparent smoothness of surface reflectivity of man-made objects under the Rayleigh resolution. One loses three orders of magnitudes in the spatial Rayleigh resolution; but gains two orders of magnitude in the reflectivity, and gains another two orders in the propagation without obscuring smog . Since CM&S can generate missing data and hard to get dynamic transients, CM&S can reduce unnecessary measurements and their associated cost and computing in the sense of super-saving CS: measuring one & getting one's neighborhood free .

  11. Microchemical effects in irradiated Fe–Cr alloys as revealed by atomistic simulation

    Energy Technology Data Exchange (ETDEWEB)

    Malerba, L., E-mail: lmalerba@sckcen.be [Structural Materials Modelling and Microstructure Unit, SMA/NMS, Studiecentrum voor Kernenergie, Centre d’Etudes de l’Energie Nucléaire (SCK-CEN), Boeretang 200, 2400 Mol (Belgium); Bonny, G.; Terentyev, D. [Structural Materials Modelling and Microstructure Unit, SMA/NMS, Studiecentrum voor Kernenergie, Centre d’Etudes de l’Energie Nucléaire (SCK-CEN), Boeretang 200, 2400 Mol (Belgium); Zhurkin, E.E. [Experimental Nuclear Physics Department, K-89, Faculty of Physics and Mechanics, Saint-Petersburg State Polytechnical University, 29 Polytekhnicheskaya Str., 195251 St. Petersburg (Russian Federation); Hou, M. [Physique des Solides Irradiés et des Nanostructures CP234, Faculté des Sciences, Université Libre de Bruxelles, Bd du Triomphe, B-1050 Bruxelles (Belgium); Vörtler, K.; Nordlund, K. [Association EURATOM-Tekes, Department of Physics, P.O. Box 43, FI-00014, University of Helsinki (Finland)

    2013-11-15

    Neutron irradiation produces evolving nanostructural defects in materials, that affect their macroscopic properties. Defect production and evolution is expected to be influenced by the chemical composition of the material. In turn, the accumulation of defects in the material results in microchemical changes, which may induce further changes in macroscopic properties. In this work we review the results of recent atomic-level simulations conducted in Fe–Cr alloys, as model materials for high-Cr ferritic–martensitic steels, to address the following questions: 1. Is the primary damage produced in displacement cascades influenced by the Cr content? If so, how? 2. Does Cr change the stability of radiation-produced defects? 3. Is the diffusivity of cascade-produced defects changed by Cr content? 4. How do Cr atoms redistribute under irradiation inside the material under the action of thermodynamic driving forces and radiation-defect fluxes? It is found that the presence of Cr does not influence the type of damage created by displacement cascades, as compared to pure Fe, while cascades do contribute to redistributing Cr, in the same direction as thermodynamic driving forces. The presence of Cr does change the stability of point-defects: the effect is weak in the case of vacancies, stronger in the case of self-interstitials. In the latter case, Cr increases the stability of self-interstitial clusters, especially those so small to be invisible to the electron microscope. Cr reduces also significantly the diffusivity of self-interstitials and their clusters, in a way that depends in a non-monotonic way on Cr content, as well as on cluster size and temperature; however, the effect is negligible on the mobility of self-interstitial clusters large enough to become visible dislocation loops. Finally, Cr-rich precipitate formation is favoured in the tensile region of edge dislocations, while it appears not to be influenced by screw dislocations; prismatic dislocation loops

  12. Medical simulation: Overview, and application to wound modelling and management

    Directory of Open Access Journals (Sweden)

    Dinker R Pai

    2012-01-01

    Full Text Available Simulation in medical education is progressing in leaps and bounds. The need for simulation in medical education and training is increasing because of a overall increase in the number of medical students vis-à-vis the availability of patients; b increasing awareness among patients of their rights and consequent increase in litigations and c tremendous improvement in simulation technology which makes simulation more and more realistic. Simulation in wound care can be divided into use of simulation in wound modelling (to test the effect of projectiles on the body and simulation for training in wound management. Though this science is still in its infancy, more and more researchers are now devising both low-technology and high-technology (virtual reality simulators in this field. It is believed that simulator training will eventually translate into better wound care in real patients, though this will be the subject of further research.

  13. Repetition-related reductions in neural activity reveal component processes of mental simulation.

    Science.gov (United States)

    Szpunar, Karl K; St Jacques, Peggy L; Robbins, Clifford A; Wig, Gagan S; Schacter, Daniel L

    2014-05-01

    In everyday life, people adaptively prepare for the future by simulating dynamic events about impending interactions with people, objects and locations. Previous research has consistently demonstrated that a distributed network of frontal-parietal-temporal brain regions supports this ubiquitous mental activity. Nonetheless, little is known about the manner in which specific regions of this network contribute to component features of future simulation. In two experiments, we used a functional magnetic resonance (fMR)-repetition suppression paradigm to demonstrate that distinct frontal-parietal-temporal regions are sensitive to processing the scenarios or what participants imagined was happening in an event (e.g., medial prefrontal, posterior cingulate, temporal-parietal and middle temporal cortices are sensitive to the scenarios associated with future social events), people (medial prefrontal cortex), objects (inferior frontal and premotor cortices) and locations (posterior cingulate/retrosplenial, parahippocampal and posterior parietal cortices) that typically constitute simulations of personal future events. This pattern of results demonstrates that the neural substrates of these component features of event simulations can be reliably identified in the context of a task that requires participants to simulate complex, everyday future experiences.

  14. Effects of ionic strength on SAXS data for proteins revealed by molecular dynamics simulations.

    Science.gov (United States)

    Oroguchi, Tomotaka; Ikeguchi, Mitsunori

    2011-01-14

    The combination of small-angle X-ray solution scattering (SAXS) experiments and molecular dynamics (MD) simulations is now becoming a powerful tool to study protein conformations in solution at an atomic resolution. In this study, we investigated effects of ionic strength on SAXS data theoretically by using MD simulations of hen egg white lysozyme at various NaCl concentrations from 0 to 1 M. The calculated SAXS excess intensities showed a significant dependence on ion concentration, which originates from the different solvent density distributions in the presence and absence of ions. The addition of ions induced a slow convergence of the SAXS data, and a ∼20 ns simulation is required to obtain convergence of the SAXS data with the presence of ions whereas only a 0.2 ns simulation is sufficient in the absence of ions. To circumvent the problem of the slow convergence in the presence of ions, we developed a novel method that reproduces the SAXS excess intensities with the presence of ions from short MD trajectories in pure water. By applying this method to SAXS data for the open and closed forms of transferrin at 1 M ion concentration, the correct form could be identified by simply using short MD simulations of the protein in pure water for 0.2 ns.

  15. Towards Automatic Processing of Virtual City Models for Simulations

    Science.gov (United States)

    Piepereit, R.; Schilling, A.; Alam, N.; Wewetzer, M.; Pries, M.; Coors, V.

    2016-10-01

    Especially in the field of numerical simulations, such as flow and acoustic simulations, the interest in using virtual 3D models to optimize urban systems is increasing. The few instances in which simulations were already carried out in practice have been associated with an extremely high manual and therefore uneconomical effort for the processing of models. Using different ways of capturing models in Geographic Information System (GIS) and Computer Aided Engineering (CAE), increases the already very high complexity of the processing. To obtain virtual 3D models suitable for simulation, we developed a tool for automatic processing with the goal to establish ties between the world of GIS and CAE. In this paper we introduce a way to use Coons surfaces for the automatic processing of building models in LoD2, and investigate ways to simplify LoD3 models in order to reduce unnecessary information for a numerical simulation.

  16. Genetic and Modeling Approaches Reveal Distinct Components of Impulsive Behavior.

    Science.gov (United States)

    Nautiyal, Katherine M; Wall, Melanie M; Wang, Shuai; Magalong, Valerie M; Ahmari, Susanne E; Balsam, Peter D; Blanco, Carlos; Hen, René

    2017-01-18

    Impulsivity is an endophenotype found in many psychiatric disorders including substance use disorders, pathological gambling, and attention deficit hyperactivity disorder. Two behavioral features often considered in impulsive behavior are behavioral inhibition (impulsive action) and delayed gratification (impulsive choice). However, the extent to which these behavioral constructs represent distinct facets of behavior with discrete biological bases is unclear. To test the hypothesis that impulsive action and impulsive choice represent statistically independent behavioral constructs in mice, we collected behavioral measures of impulsivity in a single cohort of mice using well-validated operant behavioral paradigms. Mice with manipulation of serotonin 1B receptor (5-HT1BR) expression were included as a model of disordered impulsivity. A factor analysis was used to characterize correlations between the measures of impulsivity and to identify covariates. Using two approaches, we dissociated impulsive action from impulsive choice. First, the absence of 5-HT1BRs caused increased impulsive action, but not impulsive choice. Second, based on an exploratory factor analysis, a two-factor model described the data well, with measures of impulsive action and choice separating into two independent factors. A multiple-indicator multiple-causes analysis showed that 5-HT1BR expression and sex were significant covariates of impulsivity. Males displayed increased impulsivity in both dimensions, whereas 5-HT1BR expression was a predictor of increased impulsive action only. These data support the conclusion that impulsive action and impulsive choice are distinct behavioral phenotypes with dissociable biological influences that can be modeled in mice. Our work may help inform better classification, diagnosis, and treatment of psychiatric disorders, which present with disordered impulsivity.Neuropsychopharmacology advance online publication, 18 January 2017; doi:10.1038/npp.2016.277.

  17. Experimental Simulations of Extreme Precipitation Based on the Multi-Status Markov Chain Model

    Institute of Scientific and Technical Information of China (English)

    DING Yuguo; ZHANG Jinling; JIANG Zhihong

    2010-01-01

    A multi-status Markov chain model is proposed to produce daily rainrall, and based on which extreme rainfall is simulated with the generalized Pareto distribution (GPD). The simulated daily rainfall shows high precision at most stations, especially in pluvial regions of East China. The analysis reveals that the multi-status Markov chain model excels the bi-status Markov chain model in simulating climatic features of extreme rainfall. Results from the selected six stations demonstrate excellent simulations in the following aspects: standard deviation of monthly precipitation, daily maximum precipitation, the monthly mean rainfall days, standard deviation of daily precipitation and mean daily precipitation, which are proved to be consistent with the observations. A comparative study involving 78 stations in East China also reveals good consistency in monthly mean rainfall days and mean daily maximum rainfall, except mean daily rainfall. Simulation results at the above 6 stations have shown satisfactory fitting capability of the extreme precipitation GPD method. Good analogy is also found between simulation and observation in threshold and return values. As the errors of the threshold decrease, so do the differences between the return and real values. All the above demonstrates the applicability of the Markov chain model to extreme rainfall simulations.

  18. Understanding Emergency Care Delivery through Computer Simulation Modeling.

    Science.gov (United States)

    Laker, Lauren F; Torabi, Elham; France, Daniel J; Froehle, Craig M; Goldlust, Eric J; Hoot, Nathan R; Kasaie, Parastu; Lyons, Michael S; Barg-Walkow, Laura H; Ward, Michael J; Wears, Robert L

    2017-08-10

    In 2017, Academic Emergency Medicine convened a consensus conference entitled, "Catalyzing System Change through Health Care Simulation: Systems, Competency, and Outcomes." This manuscript, a product of the breakout session on "understanding complex interactions through systems modeling," explores the role that computer simulation modeling can and should play in research and development of emergency care delivery systems. This manuscript discusses areas central to the use of computer simulation modeling in emergency care research. The four central approaches to computer simulation modeling are described (Monte Carlo Simulation, System Dynamics modeling, Discrete-Event Simulation, and Agent Based Simulation), along with problems amenable to their use and relevant examples to emergency care. Also discussed is an introduction to available software modeling platforms and how to explore their use for research, along with a research agenda for computer simulation modeling. Through this manuscript, our goal is to enhance adoption of computer simulation, a set of methods which hold great promise in addressing emergency care organization and design challenges. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

  19. Conceptual Modeling for Discrete-Event Simulation

    CERN Document Server

    Robinson, Stewart

    2010-01-01

    What is a conceptual model? How is conceptual modeling performed in general and in specific modeling domains? What is the role of established approaches in conceptual modeling? This book addresses these issues

  20. Mathematical Simulating Model of Phased-Array Antenna in Multifunction Array Radar

    Institute of Scientific and Technical Information of China (English)

    1999-01-01

    A mathematical simulating model of phased-array antenna in multifunction array radar has been approached in this paper, including the mathematical simulating model of plane phased-array pattern, the mathematical simulating model of directionality factor, the mathematical simulating model of array factor, the mathematical simulating model of array element factor and the mathematical simulating model of beam steering.

  1. MHD simulations reveal crucial differences between solar and very-cool star magnetic structures

    CERN Document Server

    Beeck, Benjamin; Reiners, Ansgar

    2011-01-01

    We carried out 3D radiative magnetohydrodynamic simulations of the convective and magnetic structure in the surface layers (uppermost part of the convection zone and photosphere) of main-sequence stars of spectral types F3 to M2. The simulation results were analyzed in terms of sizes and properties of the convection cells (granules) and magnetic flux concentrations as well as velocity, pressure, density, and temperature profiles. Our numerical simulations show for the first time a qualitative difference in the magneto-convection between solar-like stars and M dwarfs. Owing to higher surface gravity, lower opacity (resulting in higher density at optical depth unity), and more stable downflows, small-scale magnetic structures concentrate into pore-like configurations of reduced intensity. This implies that in very cool stars magnetic surface structures like plage regions and starspots significantly differ from the solar example. Such a difference would have major impact on the interpretation of Doppler imaging ...

  2. A Simulation Model Articulation of the REA Ontology

    Science.gov (United States)

    Laurier, Wim; Poels, Geert

    This paper demonstrates how the REA enterprise ontology can be used to construct simulation models for business processes, value chains and collaboration spaces in supply chains. These models support various high-level and operational management simulation applications, e.g. the analysis of enterprise sustainability and day-to-day planning. First, the basic constructs of the REA ontology and the ExSpect modelling language for simulation are introduced. Second, collaboration space, value chain and business process models and their conceptual dependencies are shown, using the ExSpect language. Third, an exhibit demonstrates the use of value chain models in predicting the financial performance of an enterprise.

  3. Research on the modeling method of soybean leafs structure simulation

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Leaf is one of the most important organs of soybean. The modeling of soybean leaf structure is useful to research of leaf function. The paper discussed it from two aspects that were distilling method of leaf profile and establishing method of leaf simulation model. It put forward basic method of soybean leaf digital process, and successfully established simulation model of soybean leaf structure based on L-system. It also solved a critical problem in the process of establishing soybean growth simulation model. And the research had guiding significance to establishment of soybean plant model.

  4. Stochastic models to simulate paratuberculosis in dairy herds

    DEFF Research Database (Denmark)

    Nielsen, S.S.; Weber, M.F.; Kudahl, Anne Margrethe Braad

    2011-01-01

    Stochastic simulation models are widely accepted as a means of assessing the impact of changes in daily management and the control of different diseases, such as paratuberculosis, in dairy herds. This paper summarises and discusses the assumptions of four stochastic simulation models and their use...... the models are somewhat different in their underlying principles and do put slightly different values on the different strategies, their overall findings are similar. Therefore, simulation models may be useful in planning paratuberculosis strategies in dairy herds, although as with all models caution...

  5. A simulation model for forecasting downhill ski participation

    Science.gov (United States)

    Daniel J. Stynes; Daniel M. Spotts

    1980-01-01

    The purpose of this paper is to describe progress in the development of a general computer simulation model to forecast future levels of outdoor recreation participation. The model is applied and tested for downhill skiing in Michigan.

  6. Simulation of 14C in IAP/LASG L30T63 Ocean Model

    Institute of Scientific and Technical Information of China (English)

    LI Qingquan; SHI Guangyu

    2005-01-01

    14C plays an important role in the study of ocean circulation and anthropogenic CO2. Radioactive 14C is usually used in ocean carbon circulation model to test the physical performance of model. In the present paper, a 14C model is established and coupled with the IAP/LASG L30T63 global ocean circulation model to simulate the distribution of natural 14C in oceans and the penetration and uptake of 14C in oceans after industrial revolution and nuclear bomb test. The simulation of natural 14C reveals the basic characteristics of oceanic ventilation. However, simulation value is "younger" than observation in the Pacific and Indian Oceans, and "older" than observation in the Atlantic deep ocean. The simulation of bomb 14C agrees well with GEOSECS observation, but the volume inventory and averaged penetration depth of bomb 14C in oceans are smaller than observation. The probable reasons for these discrepancies are analyzed.

  7. Logistics of Trainsets Creation with the Use of Simulation Models

    Science.gov (United States)

    Sedláček, Michal; Pavelka, Hynek

    2016-12-01

    This paper focuses on rail transport in following the train formation operational processes problem using computer simulations. The problem has been solved using SIMUL8 and applied to specific train formation station in the Czech Republic. The paper describes a proposal simulation model of the train formation work. Experimental modeling with an assessment of achievements and design solution for optimizing of the train formation operational process is also presented.

  8. Modeling and Simulation for Design of Suspended MEMS

    Science.gov (United States)

    2003-05-21

    simulating systems with complicated electronics is limited. Exporting reduced-order models to aHDLs enables co-simulation with transistor-level...circuit-level behavioral simulation, the models are implemented in analog hardware description languages ( aHDLs ) or directly in element matrices, both...end of module The physical equations could be implemented in the aHDLs in multiple alternative ways. It has been noticed that the language

  9. Cross-Paradigm Simulation Modeling: Challenges and Successes

    Science.gov (United States)

    2011-12-01

    This paper addresses the broad topic area of cross-paradigm simulation modeling with a focus on the discrete-event, system dynamics and agent-based...used in simulation modeling are also discussed, and the implications of these mechanisms for each paradigm is explored....and definitions are presented. The difference between the process-oriented worldview and the event-oriented worldview within discrete-event simulation

  10. Evaluation of a regional climate model for atmospheric simulation over Arctic river basins

    Institute of Scientific and Technical Information of China (English)

    MA Yan; CHEN Shang; HUA Feng; WEI Helin; D. H. BROMWICH

    2008-01-01

    Evaluation on a regional climate model was made with five-month atmospheric simulations over the Arctic river basins. The simulations were performed with a modified mesoscale model, Polar MM5 coupled to the NCAR Land Surface Model (LSM) to illustrate the skill of the coupled model (Polar MM5+LSM) in simulating atmospheric circulation over the Arctic river basins. Near-surface and upper-air observations were used to verify the simulations. Sensitivity studies between the Polar MM5 and Polar MMS+LSM simulations revealed that the coupled model could improve the forecast skill for surface variables at some sites. In addition, the extended evaluations of the coupled model simulations on the North American Arctic domain during December 15, 2002 to May 15, 2003 were carded out. The time series plots and statistics of the observations and Polar MM5+LSM simulations at six stations for near-surface and vertical profiles at 850 hPa and 500 hPa were analyzed. The model was found capable of reproducing the observed atmospheric behavior in both magnitude and variability, especially for temperature and near-surface wind direction.

  11. Software Requirements Specification Verifiable Fuel Cycle Simulation (VISION) Model

    Energy Technology Data Exchange (ETDEWEB)

    D. E. Shropshire; W. H. West

    2005-11-01

    The purpose of this Software Requirements Specification (SRS) is to define the top-level requirements for a Verifiable Fuel Cycle Simulation Model (VISION) of the Advanced Fuel Cycle (AFC). This simulation model is intended to serve a broad systems analysis and study tool applicable to work conducted as part of the AFCI (including costs estimates) and Generation IV reactor development studies.

  12. Learning-Testing Process in Classroom: An Empirical Simulation Model

    Science.gov (United States)

    Buda, Rodolphe

    2009-01-01

    This paper presents an empirical micro-simulation model of the teaching and the testing process in the classroom (Programs and sample data are available--the actual names of pupils have been hidden). It is a non-econometric micro-simulation model describing informational behaviors of the pupils, based on the observation of the pupils'…

  13. Active site modeling in copper azurin molecular dynamics simulations

    NARCIS (Netherlands)

    Rizzuti, B; Swart, M; Sportelli, L; Guzzi, R

    2004-01-01

    Active site modeling in molecular dynamics simulations is investigated for the reduced state of copper azurin. Five simulation runs (5 ns each) were performed at room temperature to study the consequences of a mixed electrostatic/constrained modeling for the coordination between the metal and the po

  14. Object Oriented Toolbox for Modelling and Simulation of Dynamic Systems

    DEFF Research Database (Denmark)

    Thomsen, Per Grove; Poulsen, Mikael Zebbelin; Wagner, Falko Jens;

    1999-01-01

    Design and Implementation of a simulation toolbox based on Object Oriented modelling Techniques.Experimental implementation in C++ using the Godess ODE-solution platform.......Design and Implementation of a simulation toolbox based on Object Oriented modelling Techniques.Experimental implementation in C++ using the Godess ODE-solution platform....

  15. Application of computer simulated persons in indoor environmental modeling

    DEFF Research Database (Denmark)

    Topp, C.; Nielsen, P. V.; Sørensen, Dan Nørtoft

    2002-01-01

    Computer simulated persons are often applied when the indoor environment is modeled by computational fluid dynamics. The computer simulated persons differ in size, shape, and level of geometrical complexity, ranging from simple box or cylinder shaped heat sources to more humanlike models. Little...

  16. Exploiting Modelling and Simulation in Support of Cyber Defence

    NARCIS (Netherlands)

    Klaver, M.H.A.; Boltjes, B.; Croom-Jonson, S.; Jonat, F.; Çankaya, Y.

    2014-01-01

    The rapidly evolving environment of Cyber threats against the NATO Alliance has necessitated a renewed focus on the development of Cyber Defence policy and capabilities. The NATO Modelling and Simulation Group is looking for ways to leverage Modelling and Simulation experience in research, analysis

  17. Exploiting Modelling and Simulation in Support of Cyber Defence

    NARCIS (Netherlands)

    Klaver, M.H.A.; Boltjes, B.; Croom-Jonson, S.; Jonat, F.; Çankaya, Y.

    2014-01-01

    The rapidly evolving environment of Cyber threats against the NATO Alliance has necessitated a renewed focus on the development of Cyber Defence policy and capabilities. The NATO Modelling and Simulation Group is looking for ways to leverage Modelling and Simulation experience in research, analysis

  18. Combat Simulation Modeling in Naval Special Warfare Mission Planning.

    Science.gov (United States)

    1995-12-01

    This thesis explores the potential role of combat simulation modeling in the Naval Special Warfare mission planning cycle. It discusses methods for...at the tactical level. The thesis concludes by discussing additional applications of combat simulation modeling within the Naval Special Warfare community and makes recommendations for its effective and efficient implementation.

  19. Flow Through a Laboratory Sediment Sample by Computer Simulation Modeling

    Science.gov (United States)

    2006-09-07

    Flow through a laboratory sediment sample by computer simulation modeling R.B. Pandeya’b*, Allen H. Reeda, Edward Braithwaitea, Ray Seyfarth0, J.F...through a laboratory sediment sample by computer simulation modeling 5a. CONTRACT NUMBER 5b. GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR(S

  20. Autonomous underwater vehicles modeling, control design and simulation

    CERN Document Server

    Wadoo, Sabiha

    2010-01-01

    Underwater vehicles present some difficult and very particular control system design problems. These are often the result of nonlinear dynamics and uncertain models, as well as the presence of sometimes unforeseeable environmental disturbances that are difficult to measure or estimate. Autonomous Underwater Vehicles: Modeling, Control Design, and Simulation outlines a novel approach to help readers develop models to simulate feedback controllers for motion planning and design. The book combines useful information on both kinematic and dynamic nonlinear feedback control models, providing simula

  1. Adaptive Simulated Annealing Based Protein Loop Modeling of Neurotoxins

    Institute of Scientific and Technical Information of China (English)

    陈杰; 黄丽娜; 彭志红

    2003-01-01

    A loop modeling method, adaptive simulated annealing, for ab initio prediction of protein loop structures, as an optimization problem of searching the global minimum of a given energy function, is proposed. An interface-friendly toolbox-LoopModeller in Windows and Linux systems, VC++ and OpenGL environments is developed for analysis and visualization. Simulation results of three short-chain neurotoxins modeled by LoopModeller show that the method proposed is fast and efficient.

  2. Photodiode Circuit Macro-model for SPICE Simulation

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    An accurate photodiode circuit macro-model is proposed for SPICE simulation. The definition and implementation of the macro-model is based on carrier stationary continuity equation. In this macro-model, the photodiode is a device of three pins, one for light intensity input and the other two for photocurrent output, which represent the relationship between photocurrent and incident light. The validity of the proposed macro-model is demonstrated with its PSPICE simulation result compared with reported experimental data.

  3. Dynamic wind turbine models in power system simulation tool

    DEFF Research Database (Denmark)

    Hansen, A.; Jauch, Clemens; Soerensen, P.

    The present report describes the dynamic wind turbine models implemented in the power system simulation tool DIgSILENT. The developed models are a part of the results of a national research project, whose overall objective is to create a model database in different simulation tools. The report...... provides a description of the wind turbine modelling, both at a component level and at a system level....

  4. Proton transport in a binary biomimetic solution revealed by molecular dynamics simulation

    NARCIS (Netherlands)

    Liang, C.; Jansen, T.L.Th.A.

    2011-01-01

    We report the simulation results of the proton transport in a binary mixture of amphiphilic tetramethylurea (TMU) molecules and water. We identify different mechanisms that either facilitate or retard the proton transport. The efficiency of these mechanisms depends on the TMU concentration. The

  5. Notes of Numerical Simulation of Summer Rainfall in China with a Regional Climate Model REMO

    Institute of Scientific and Technical Information of China (English)

    CUI Xuefeng; HUANG Gang; CHEN Wen

    2008-01-01

    Regional climate models are major tools for regional climate simulation and their output are mostly used for climate impact studies. Notes are reported from a series of numerical simulations of summer rainfall in China with a regional climate model. Domain sizes and running modes are major foci. The results reveal that the model in forecast mode driven by "perfect" boundaries could reasonably represent the inter-annual differences: heavy rainfall along the Yangtze River in 1998 and dry conditions in 1997. Model simulation in climate mode differs to a greater extent from observation than that in forecast mode. This may be due to the fact that in climate mode it departs further from the driving fields and relies more on internal model dynamical processes. A smaller domain in climate mode outperforms a larger one. Further development of model parameterizations including dynamic vegetation are encouraged in future studies.

  6. A novel computer simulation for modeling grain growth

    Energy Technology Data Exchange (ETDEWEB)

    Chen, L.Q. (Pennsylvania State Univ., University Park, PA (United States). Dept. of Materials Science and Engineering)

    1995-01-01

    In this paper, the author proposes a new computer simulation model for investigating grain growth kinetics, born from the recent work on the domain growth kinetics of a quenched system with many non-conserved order parameters. A key new feature of this model for studying grain growth is that the grain boundaries are diffuse, as opposed to previous meanfield and statistical theories and Monte-Carlo simulations which assumed that grain boundaries were sharp. Unlike the Monte-Carlo simulations in which grain boundaries are made up of kinks, grain boundaries in the continuum model are smooth. Below, he describes this model in detail, give prescriptions for computer simulation, and then present computer simulation results on a two-dimensional model system.

  7. Catalog of Wargaming and Military Simulation Models

    Science.gov (United States)

    1989-09-01

    Generic Missile Model . MODEL TYPE: Analysis. PROPONENT: WftDC, Avionics Laboratory...requirements. Users: Primarily WRDC/AAWA. Comments: N/A. G-4 TITLE: GFGMMLCM - GEneric Missile Model with Tracking Loops and Counter-Measure SMODEI TYPE...Structure Trade-Off Analysis Model ............ F-31 G2WS - G2 Workstation ................. ..................... C-I GEUI - Generic Missile Model ................................

  8. Animal Model Reveals Potential Waterborne Transmission of Helicobacter pylori Infection.

    Science.gov (United States)

    Boehnke, Kevin F; Eaton, Kathryn A; Valdivieso, Manuel; Baker, Laurence H; Xi, Chuanwu

    2015-10-01

    Helicobacter pylori infection has been consistently associated with lack of access to clean water and proper sanitation, but no studies have demonstrated that the transmission of H. pylori can occur from drinking contaminated water. In this study, we used a laboratory mouse model to test whether waterborne H. pylori could cause gastric infection. Groups of immunocompetent C57/BL6 Helicobacter-free mice were exposed to static concentrations (1.29 × 10(5), 10(6), 10(7), 10(8), and 10(9) CFU/L) of H. pylori in their drinking water for 4 weeks. One group of Helicobacter-free mice was exposed to uncontaminated water as a negative control. H. pylori morphology changes in water were examined using microscopy Live/Dead staining. Following exposure, H. pylori infection and inflammation status in the stomach were evaluated using quantitative culture, PCR, the rapid urease test, and histology. None of the mice in the negative control or 10(5) groups were infected. One of 20 cages (one of 40 mice) of the 10(6) group, three of 19 cages (four of 38 mice) of the 10(7) CFU/L group, 19 of 20 cages (33 of 40 mice) of the 10(8) group, and 20 of 20 cages (39 of 40 mice) of the 10(9) CFU/L group were infected. Infected mice had significantly higher gastric inflammation than uninfected mice (27.86% higher inflammation, p < .0001). We offer proof that H. pylori in water is infectious in mice, suggesting that humans drinking contaminated water may be at risk of contracting H. pylori infection. Much work needs to be performed to better understand the risk of infection from drinking H. pylori-contaminated water. © 2015 John Wiley & Sons Ltd.

  9. Hybrid Modeling and Simulation of Automotive Supply Chain Network

    Directory of Open Access Journals (Sweden)

    Wen Wang

    2013-07-01

    Full Text Available According to the operation of automotive supply chain and the features of various simulation methods, we create and simulate a automotive supply chain network model with the core enterprise of two vehicle manufacturers, consisting of several parts suppliers, vehicle distributors and logistics service providers. On this basis of a conceptual model including the establishment of enterprise layer, business layer and operation layer, we establish a detailed model of the network system according to the network structure of automotive supply chain, the operation process and the internal business process of core enterprises; then we use System Dynamics (SD, Discrete Event Simulation (DES and Agent Based Modeling (ABM to describe the operating state of each node in the network model. We execute and analyze the simulation model of the whole network system described by Anylogic, using the results of the distributors’ inventory, inventory cost and customer’s satisfaction to prove the effectiveness of the model.

  10. SDG-based Model Validation in Chemical Process Simulation

    Institute of Scientific and Technical Information of China (English)

    张贝克; 许欣; 马昕; 吴重光

    2013-01-01

    Signed direct graph (SDG) theory provides algorithms and methods that can be applied directly to chemical process modeling and analysis to validate simulation models, and is a basis for the development of a soft-ware environment that can automate the validation activity. This paper is concentrated on the pretreatment of the model validation. We use the validation scenarios and standard sequences generated by well-established SDG model to validate the trends fitted from the simulation model. The results are helpful to find potential problems, as-sess possible bugs in the simulation model and solve the problem effectively. A case study on a simulation model of boiler is presented to demonstrate the effectiveness of this method.

  11. A Simulation and Modeling Framework for Space Situational Awareness

    Energy Technology Data Exchange (ETDEWEB)

    Olivier, S S

    2008-09-15

    This paper describes the development and initial demonstration of a new, integrated modeling and simulation framework, encompassing the space situational awareness enterprise, for quantitatively assessing the benefit of specific sensor systems, technologies and data analysis techniques. The framework is based on a flexible, scalable architecture to enable efficient, physics-based simulation of the current SSA enterprise, and to accommodate future advancements in SSA systems. In particular, the code is designed to take advantage of massively parallel computer systems available, for example, at Lawrence Livermore National Laboratory. The details of the modeling and simulation framework are described, including hydrodynamic models of satellite intercept and debris generation, orbital propagation algorithms, radar cross section calculations, optical brightness calculations, generic radar system models, generic optical system models, specific Space Surveillance Network models, object detection algorithms, orbit determination algorithms, and visualization tools. The use of this integrated simulation and modeling framework on a specific scenario involving space debris is demonstrated.

  12. Timing Interactions in Social Simulations: The Voter Model

    Science.gov (United States)

    Fernández-Gracia, Juan; Eguíluz, Víctor M.; Miguel, Maxi San

    The recent availability of huge high resolution datasets on human activities has revealed the heavy-tailed nature of the interevent time distributions. In social simulations of interacting agents the standard approach has been to use Poisson processes to update the state of the agents, which gives rise to very homogeneous activity patterns with a well defined characteristic interevent time. As a paradigmatic opinion model we investigate the voter model and review the standard update rules and propose two new update rules which are able to account for heterogeneous activity patterns. For the new update rules each node gets updated with a probability that depends on the time since the last event of the node, where an event can be an update attempt (exogenous update) or a change of state (endogenous update). We find that both update rules can give rise to power law interevent time distributions, although the endogenous one more robustly. Apart from that for the exogenous update rule and the standard update rules the voter model does not reach consensus in the infinite size limit, while for the endogenous update there exist a coarsening process that drives the system toward consensus configurations.

  13. Numerical simulation of tropical-temperate troughs over Southern Africa using the CSU RAMS model

    CSIR Research Space (South Africa)

    Van den Heever, SC

    1997-08-01

    Full Text Available ) and the wet (1981) late summer case studies has been examined. Model simulations reveal that the tropical-temperate troughs form when an upper westerly wave coincides with an easterly, wave or depression in lower levels. These systems occur preferentially over...

  14. Development of high resolution simulations of the atmospheric environment using the MASS model

    Science.gov (United States)

    Kaplan, Michael L.; Zack, John W.; Karyampudi, V. Mohan

    1989-01-01

    Numerical simulations were performed with a very high resolution (7.25 km) version of the MASS model (Version 4.0) in an effort to diagnose the vertical wind shear and static stability structure during the Shuttle Challenger disaster which occurred on 28 January 1986. These meso-beta scale simulations reveal that the strongest vertical wind shears were concentrated in the 200 to 150 mb layer at 1630 GMT, i.e., at about the time of the disaster. These simulated vertical shears were the result of two primary dynamical processes. The juxtaposition of both of these processes produced a shallow (30 mb deep) region of strong vertical wind shear, and hence, low Richardson number values during the launch time period. Comparisons with the Cape Canaveral (XMR) rawinsonde indicates that the high resolution MASS 4.0 simulation more closely emulated nature than did previous simulations of the same event with the GMASS model.

  15. A Jitter Less VCO Model in PLL for EMTP Simulation

    Science.gov (United States)

    Funaki, Tsuyoshi; Hikihara, Takashi

    PLL is used to synchronize the phase of an inverter AC output with that of an utility AC. The dynamic PLL behavior must be accurately simulated for it governs the control performance of an inverter. The VCO part of a PLL conventionally consists of an integrator, which is reset at the instant when it exceeds 2π. A numerical simulation, such as an EMTP simulation, with a fixed time step calculation cannot detect these accurate reset timings. This inconsistency in reset timing induces a phase jitter. The phase error, due to jitter, becomes a severe problem when a large time step is employed to simulate long period phenomena, and the inverter is modeled by the state-space averaging method. This paper proposes a jitter less VCO model for EMTP simulation. The phase jitter of the proposed VCO model is completely suppressed, regardless of the time step length. The improvements are confirmed through EMTP simulations.

  16. A Vector-based Cellular Automata Model for Simulating Urban Land Use Change

    Institute of Scientific and Technical Information of China (English)

    LU Yi; CAO Min; ZHANG Lei

    2015-01-01

    Cellular Automata (CA) is widely used for the simulation of land use changes.This study applied a vector-based CA model to simulate land use change in order to minimize or eliminate the scale sensitivity in traditional raster-based CA model.The cells of vector-based CA model are presented according to the shapes and attributes of geographic entities,and the transition rules of vector-based CA model are improved by taking spatial variables of the study area into consideration.The vector-based CA model is applied to simulate land use changes in downtown of Qidong City,Jiangsu Province,China and its validation is confirmed by the methods of visual assessment and spatial accuracy.The simulation result of vector-based CA model reveals that nearly 75% of newly increased urban cells are located in the northwest and southwest parts of the study area from 2002 to 2007,which is in consistent with real land use map.In addition,the simulation results of the vector-based and raster-based CA models are compared to real land use data and their spatial accuracies are found to be 84.0% and 81.9%,respectively.In conclusion,results from this study indicate that the vector-based CA model is a practical and applicable method for the simulation of urbanization processes.

  17. Simulation modeling on the growth of firm's safety management capability

    Institute of Scientific and Technical Information of China (English)

    LIU Tie-zhong; LI Zhi-xiang

    2008-01-01

    Aiming to the deficiency of safety management measure, established simulation model about firm's safety management capability(FSMC) based on organizational learning theory. The system dynamics(SD) method was used, in which level and rate system, variable equation and system structure flow diagram was concluded. Simulation model was verified from two aspects: first, model's sensitivity to variable was tested from the gross of safety investment and the proportion of safety investment; second, variables dependency was checked up from the correlative variable of FSMC and organizational learning. The feasibility of simulation model is verified though these processes.

  18. Simplified Model of Brushless Synchronous Generator for Real Time Simulation

    CERN Document Server

    Lopez, M D; Rebollo, E; Blanquez, F R

    2015-01-01

    This paper presents a simplified model of brushless synchronous machine for saving hardware resources in a real time simulation system. Firstly, a brushless excitation system model is described. Thereafter, the simplified transfer function of an AC exciter and rotating diodes of the brushless excitation system is estimated. Finally, the complete system is simulated, comparing the main generator's voltage with both detailed and simplified excitation systems in several scenarios. These results show the accuracy of the simplified model against the detailed simulation model, resulting on an important hardware resources savings.

  19. Handbook of Real-World Applications in Modeling and Simulation

    CERN Document Server

    Sokolowski, John A

    2012-01-01

    This handbook provides a thorough explanation of modeling and simulation in the most useful, current, and predominant applied areas, such as transportation, homeland security, medicine, operational research, military science, and business modeling.  The authors offer a concise look at the key concepts and techniques of modeling and simulation and then discuss how and why the presented domains have become leading applications.  The book begins with an introduction of why modeling and simulation is a reliable analysis assessment tool for complex syste

  20. Optical modeling and simulation of thin-film photovoltaic devices

    CERN Document Server

    Krc, Janez

    2013-01-01

    In wafer-based and thin-film photovoltaic (PV) devices, the management of light is a crucial aspect of optimization since trapping sunlight in active parts of PV devices is essential for efficient energy conversions. Optical modeling and simulation enable efficient analysis and optimization of the optical situation in optoelectronic and PV devices. Optical Modeling and Simulation of Thin-Film Photovoltaic Devices provides readers with a thorough guide to performing optical modeling and simulations of thin-film solar cells and PV modules. It offers insight on examples of existing optical models

  1. A study for production simulation model generation system based on data model at a shipyard

    Directory of Open Access Journals (Sweden)

    Myung-Gi Back

    2016-09-01

    Full Text Available Simulation technology is a type of shipbuilding product lifecycle management solution used to support production planning or decision-making. Normally, most shipbuilding processes are consisted of job shop production, and the modeling and simulation require professional skills and experience on shipbuilding. For these reasons, many shipbuilding companies have difficulties adapting simulation systems, regardless of the necessity for the technology. In this paper, the data model for shipyard production simulation model generation was defined by analyzing the iterative simulation modeling procedure. The shipyard production simulation data model defined in this study contains the information necessary for the conventional simulation modeling procedure and can serve as a basis for simulation model generation. The efficacy of the developed system was validated by applying it to the simulation model generation of the panel block production line. By implementing the initial simulation model generation process, which was performed in the past with a simulation modeler, the proposed system substantially reduced the modeling time. In addition, by reducing the difficulties posed by different modeler-dependent generation methods, the proposed system makes the standardization of the simulation model quality possible.

  2. Effects of antimicrobial peptide revealed by simulations: translocation, pore formation, membrane corrugation and euler buckling.

    Science.gov (United States)

    Chen, Licui; Jia, Nana; Gao, Lianghui; Fang, Weihai; Golubovic, Leonardo

    2013-04-11

    We explore the effects of the peripheral and transmembrane antimicrobial peptides on the lipid bilayer membrane by using the coarse grained Dissipative Particle Dynamics simulations. We study peptide/lipid membrane complexes by considering peptides with various structure, hydrophobicity and peptide/lipid interaction strength. The role of lipid/water interaction is also discussed. We discuss a rich variety of membrane morphological changes induced by peptides, such as pore formation, membrane corrugation and Euler buckling.

  3. Dynamic models of staged gasification processes. Documentation of gasification simulator; Dynamiske modeller a f trinopdelte forgasningsprocesser. Dokumentation til forgasser simulator

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2005-02-15

    In connection with the ERP project 'Dynamic modelling of staged gasification processes' a gasification simulator has been constructed. The simulator consists of: a mathematical model of the gasification process developed at Technical University of Denmark, a user interface programme, IGSS, and a communication interface between the two programmes. (BA)

  4. A homology model of Xyloglucan Xylosyltransferase 2 reveals critical amino acids involved in substrate binding.

    Science.gov (United States)

    Culbertson, Alan T; Tietze, Alesia A; Tietze, Daniel; Chou, Yi-Hsiang; Smith, Adrienne L; Young, Zachary T; Zabotina, Olga A

    2016-09-01

    In dicotyledonous plants, xyloglucan (XyG) is the most abundant hemicellulose of the primary cell wall. The enzymes involved in XyG biosynthesis have been identified through reverse-genetics and activity was characterized by heterologous expression. Currently, there is no information on the atomic structures or amino acids involved in activity or substrate binding of any of the Golgi-localized XyG biosynthetic enzymes. A homology model of the xyloglucan xylosyltransferase 2 (XXT2) catalytic domain was built on the basis of the crystal structure of A64Rp. Molecular dynamics simulations revealed that the homology model retains the glycosyltransferase (GT)-A fold of the template structure used to build the homology model indicating that XXT2 likely has a GT-A fold. According to the XXT2 homology model, six amino acids (Phe204, Lys207, Asp228, Ser229, Asp230, His378) were selected and their contribution in catalytic activity was investigated. Site-directed mutagenesis studies show that Asp228, Asp230 and His378 are critical for XXT2 activity and are predicted to be involved in coordination of manganese ion. Lys207 was also found to be critical for protein activity and the homology model indicates a critical role in substrate binding. Additionally, Phe204 mutants have less of an impact on XXT2 activity with the largest effect when replaced with a polar residue. This is the first study that investigates the amino acids involved in substrate binding of the XyG-synthesizing xylosyltransferases and contributes to the understanding of the mechanisms of polysaccharide-synthesizing GTs and XyG biosynthesis. © The Author 2016. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  5. Probabilistic Based Modeling and Simulation Assessment

    Science.gov (United States)

    2010-06-01

    but with the head and neck replaced with a high fidelity cervical spine and head model. The occupant models were used to determine the effects of...fidelity cervical spine and head model... vertebrae , including the disks, ligaments and musculature, Figure 6. In total there are 57837 elements with 63713 nodes. A full description of the model

  6. Modeling and simulation of membrane process

    Science.gov (United States)

    Staszak, Maciej

    2017-06-01

    The article presents the different approaches to polymer membrane mathematical modeling. Traditional models based on experimental physicochemical correlations and balance models are presented in the first part. Quantum and molecular mechanics models are presented as they are more popular for polymer membranes in fuel cells. The initial part is enclosed by neural network models which found their use for different types of processes in polymer membranes. The second part is devoted to models of fluid dynamics. The computational fluid dynamics technique can be divided into solving of Navier-Stokes equations and into Boltzmann lattice models. Both approaches are presented focusing on membrane processes.

  7. Application of simulation modeling to lipid peroxidation processes.

    Science.gov (United States)

    Tappel, A L; Tappel, A A; Fraga, C G

    1989-01-01

    A quantitative simulation model was developed that utilized present knowledge of lipid peroxidation in biological systems. The simulation model incorporated the following features: peroxidizability of polyunsaturated lipids, activation of inducers and their initiation of lipid peroxidation, concurrent autoxidation, inhibition of lipid peroxidation by vitamin E, reduction of some of the hydroperoxides by glutathione peroxidase, and formation of thiobarbituric acid-reactive substances. Simulation calculations were done using a computer spreadsheet program. When the simulation program was applied to tissue slice and microsomal peroxidizing systems, the results of the stimulation were in agreement with the experimental data.

  8. A View on Future Building System Modeling and Simulation

    Energy Technology Data Exchange (ETDEWEB)

    Wetter, Michael

    2011-04-01

    This chapter presents what a future environment for building system modeling and simulation may look like. As buildings continue to require increased performance and better comfort, their energy and control systems are becoming more integrated and complex. We therefore focus in this chapter on the modeling, simulation and analysis of building energy and control systems. Such systems can be classified as heterogeneous systems because they involve multiple domains, such as thermodynamics, fluid dynamics, heat and mass transfer, electrical systems, control systems and communication systems. Also, they typically involve multiple temporal and spatial scales, and their evolution can be described by coupled differential equations, discrete equations and events. Modeling and simulating such systems requires a higher level of abstraction and modularisation to manage the increased complexity compared to what is used in today's building simulation programs. Therefore, the trend towards more integrated building systems is likely to be a driving force for changing the status quo of today's building simulation programs. Thischapter discusses evolving modeling requirements and outlines a path toward a future environment for modeling and simulation of heterogeneous building systems.A range of topics that would require many additional pages of discussion has been omitted. Examples include computational fluid dynamics for air and particle flow in and around buildings, people movement, daylight simulation, uncertainty propagation and optimisation methods for building design and controls. For different discussions and perspectives on the future of building modeling and simulation, we refer to Sahlin (2000), Augenbroe (2001) and Malkawi and Augenbroe (2004).

  9. Reducing outpatient waiting time: a simulation modeling approach.

    Science.gov (United States)

    Aeenparast, Afsoon; Tabibi, Seyed Jamaleddin; Shahanaghi, Kamran; Aryanejhad, Mir Bahador

    2013-09-01

    The objective of this study was to provide a model for reducing outpatient waiting time by using simulation. A simulation model was constructed by using the data of arrival time, service time and flow of 357 patients referred to orthopedic clinic of a general teaching hospital in Tehran. The simulation model was validated before constructing different scenarios. In this study 10 scenarios were presented for reducing outpatient waiting time. Patients waiting time was divided into three levels regarding their physicians. These waiting times for all scenarios were computed by simulation model. According to the final scores the 9th scenario was selected as the best way for reducing outpatient's waiting time. Using the simulation as a decision making tool helps us to decide how we can reduce outpatient's waiting time. Comparison of outputs of this scenario and the based- case scenario in simulation model shows that combining physician's work time changing with patient's admission time changing (scenario 9) would reduce patient waiting time about 73.09%. Due to dynamic and complex nature of healthcare systems, the application of simulation for the planning, modeling and analysis of these systems has lagged behind traditional manufacturing practices. Rapid growth in health care system expenditures, technology and competition has increased the complexity of health care systems. Simulation is a useful tool for decision making in complex and probable systems.

  10. Calibration of the simulation model of the VINCY cyclotron magnet

    Directory of Open Access Journals (Sweden)

    Ćirković Saša

    2002-01-01

    Full Text Available The MERMAID program will be used to isochronise the nominal magnetic field of the VINCY Cyclotron. This program simulates the response, i. e. calculates the magnetic field, of a previously defined model of a magnet. The accuracy of 3D field calculation depends on the density of the grid points in the simulation model grid. The size of the VINCY Cyclotron and the maximum number of grid points in the XY plane limited by MERMAID define the maximumobtainable accuracy of field calculations. Comparisons of the field simulated with maximum obtainable accuracy with the magnetic field measured in the first phase of the VINCY Cyclotron magnetic field measurements campaign has shown that the difference between these two fields is not as small as required. Further decrease of the difference between these fields is obtained by the simulation model calibration, i. e. by adjusting the current through the main coils in the simulation model.

  11. Calibration of the simulation model of the Vincy cyclotron magnet

    CERN Document Server

    Cirkovic, S; Vorozhtsov, A S; Vorozhtsov, S B

    2002-01-01

    The MERMAID program will be used to isochronise the nominal magnetic field of the VINCY Cyclotron. This program simulates the response, i. e. calculates the magnetic field, of a previously defined model of a magnet. The accuracy of 3D field calculation depends on the density of the grid points in the simulation model grid. The size of the VINCY Cyclotron and the maximum number of grid points in the XY plane limited by MERMAID define the maximum obtainable accuracy of field calculations. Comparisons of the field simulated with maximum obtainable accuracy with the magnetic field measured in the first phase of the VINCY Cyclotron magnetic field measurements campaign has shown that the difference between these two fields is not as small as required. Further decrease of the difference between these fields is obtained by the simulation model calibration, i. e. by adjusting the current through the main coils in the simulation model.

  12. MODELING OF HIGH STORAGE SHEET DEPOT WITH PLANT SIMULATION

    Directory of Open Access Journals (Sweden)

    Andrzej Jardzioch

    2013-03-01

    Full Text Available Manufacturing processes are becoming increasingly automated. Introduction of innovative solutions often necessitate processing very large number of signals from various devices. Correctness tests of the components configuration becomes a compiled operation requiring vast expenditure of time and knowledge. The models may be a mathematical reflection of the actual object. Many actions can be computer-assisted to varying degree. One example is construction of simulation models. These can also be simulation models developed in advanced software. The stages of creating a model may be purely random. This paper aims at a closer analysis of the simulation model based on the high storage sheet depot modeling using Plant Simulation software. The results of analysis can be used for optimization, but this stage is a separate issue.

  13. A framework for the calibration of social simulation models

    CERN Document Server

    Ciampaglia, Giovanni Luca

    2013-01-01

    Simulation with agent-based models is increasingly used in the study of complex socio-technical systems and in social simulation in general. This paradigm offers a number of attractive features, namely the possibility of modeling emergent phenomena within large populations. As a consequence, often the quantity in need of calibration may be a distribution over the population whose relation with the parameters of the model is analytically intractable. Nevertheless, we can simulate. In this paper we present a simulation-based framework for the calibration of agent-based models with distributional output based on indirect inference. We illustrate our method step by step on a model of norm emergence in an online community of peer production, using data from three large Wikipedia communities. Model fit and diagnostics are discussed.

  14. NATO Modelling and Simulation Standards Profile

    NARCIS (Netherlands)

    Huiskamp, W.; Igarza, J.L.; Voiculet, A.

    2012-01-01

    Open and common standards are essential enablers for simulation interoperability and re-use. This includes:  Technical architecture standards - e.g. HLA - the High Level Architecture,  Data interchange standards - e.g. SEDRIS - Synthetic Environment Data Representation and Interchange

  15. Motion perception modelling in flight simulation

    NARCIS (Netherlands)

    Groen, E.L.; Hosman, R.J.A.W.; Bos, J.E.; Dominicus, J.W.

    2004-01-01

    Motion cueing algorithms are indispensable to transform aircraft motions into simulator motions. Usually, such algorithms apply to the whole flight envelope. Since a motion base should stay within its six degrees of freedom workspace, the parameter settings necessarily involve concessions, which may

  16. Cognitive model supported tactical training simulation

    NARCIS (Netherlands)

    Doesburg, W.A. van; Bosch, K. van den

    2005-01-01

    Simulation-based tactical training can be made more effective by using cognitive software agents to play key roles (e.g. team mate, adversaries, instructor). Due to the dynamic and complex nature of military tactics, it is hard to create agents that behave realistically and support the training lead

  17. System Simulation Modeling: A Case Study Illustration of the Model Development Life Cycle

    Science.gov (United States)

    Janice K. Wiedenbeck; D. Earl Kline

    1994-01-01

    Systems simulation modeling techniques offer a method of representing the individual elements of a manufacturing system and their interactions. By developing and experimenting with simulation models, one can obtain a better understanding of the overall physical system. Forest products industries are beginning to understand the importance of simulation modeling to help...

  18. Novel Polyurethane Matrix Systems Reveal a Particular Sustained Release Behavior Studied by Imaging and Computational Modeling.

    Science.gov (United States)

    Campiñez, María Dolores; Caraballo, Isidoro; Puchkov, Maxim; Kuentz, Martin

    2017-07-01

    The aim of the present work was to better understand the drug-release mechanism from sustained release matrices prepared with two new polyurethanes, using a novel in silico formulation tool based on 3-dimensional cellular automata. For this purpose, two polymers and theophylline as model drug were used to prepare binary matrix tablets. Each formulation was simulated in silico, and its release behavior was compared to the experimental drug release profiles. Furthermore, the polymer distributions in the tablets were imaged by scanning electron microscopy (SEM) and the changes produced by the tortuosity were quantified and verified using experimental data. The obtained results showed that the polymers exhibited a surprisingly high ability for controlling drug release at low excipient concentrations (only 10% w/w of excipient controlled the release of drug during almost 8 h). The mesoscopic in silico model helped to reveal how the novel biopolymers were controlling drug release. The mechanism was found to be a special geometrical arrangement of the excipient particles, creating an almost continuous barrier surrounding the drug in a very effective way, comparable to lipid or waxy excipients but with the advantages of a much higher compactability, stability, and absence of excipient polymorphism.

  19. Plant growth simulation for landscape scale hydrologic modeling

    Science.gov (United States)

    Landscape scale hydrologic models can be improved by incorporating realistic, process-oriented plant models for simulating crops, grasses, and woody species. The objective of this project was to present some approaches for plant modeling applicable to hydrologic models like SWAT that can affect the...

  20. A transient model to simulate HTPEM fuel cell impedance spectra

    DEFF Research Database (Denmark)

    Vang, Jakob Rabjerg; Andreasen, Søren Juhl; Kær, Søren Knudsen

    2012-01-01

    This paper presents a spatially resolved transient fuel cell model applied to the simulation of high temperature PEM fuel cell impedance spectra. The model is developed using a 2D finite volume method approach. The model is resolved along the channel and across the membrane. The model considers...

  1. Discrete event simulation: Modeling simultaneous complications and outcomes

    NARCIS (Netherlands)

    Quik, E.H.; Feenstra, T.L.; Krabbe, P.F.M.

    2012-01-01

    OBJECTIVES: To present an effective and elegant model approach to deal with specific characteristics of complex modeling. METHODS: A discrete event simulation (DES) model with multiple complications and multiple outcomes that each can occur simultaneously was developed. In this DES model parameters,

  2. Geometry model construction in infrared image theory simulation of buildings

    Institute of Scientific and Technical Information of China (English)

    谢鸣; 李玉秀; 徐辉; 谈和平

    2004-01-01

    Geometric model construction is the basis of infrared image theory simulation. Taking the construction of the geometric model of one building in Harbin as an example, this paper analyzes the theoretical groundings of simplification and principles of geometric model construction of buildings. It then discusses some particular treatment methods in calculating the radiation transfer coefficient in geometric model construction using the Monte Carlo Method.

  3. Tuning hydrological models for ecological modeling - improving simulations of low flows critical to stream ecology

    DEFF Research Database (Denmark)

    Olsen, Martin; Troldborg, Lars; Boegh, Eva

    2008-01-01

    The consequences of using simulated discharge from a conventional hydrological model as input in stream physical habitat modelling was investigated using output from the Danish national hydrological model and a physical habitat model of three small streams. It was found that low flow simulation...... errors could have large impact on simulation of physical habitat conditions. If these two models are to be used to assess groundwater abstraction impact on physical habitat conditions the hydrological model should be tuned to the purpose...

  4. Tuning hydrological models for ecological modeling - improving simulations of low flows critical to stream ecology

    DEFF Research Database (Denmark)

    Olsen, Martin; Troldborg, Lars; Boegh, Eva;

    2008-01-01

    The consequences of using simulated discharge from a conventional hydrological model as input in stream physical habitat modelling was investigated using output from the Danish national hydrological model and a physical habitat model of three small streams. It was found that low flow simulation...... errors could have large impact on simulation of physical habitat conditions. If these two models are to be used to assess groundwater abstraction impact on physical habitat conditions the hydrological model should be tuned to the purpose...

  5. Air Gun Launch Simulation Modeling and Finite Element Model Sensitivity Analysis

    Science.gov (United States)

    2006-01-01

    Air Gun Launch Simulation Modeling and Finite Element Model Sensitivity Analysis by Mostafiz R. Chowdhury and Ala Tabiei ARL-TR-3703...Adelphi, MD 20783-1145 ARL-TR-3703 January 2006 Air Gun Launch Simulation Modeling and Finite Element Model Sensitivity Analysis...GRANT NUMBER 4. TITLE AND SUBTITLE Air Gun Launch Simulation Modeling and Finite Element Model Sensitivity Analysis 5c. PROGRAM

  6. Relativistic modeling capabilities in PERSEUS extended MHD simulation code for HED plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Hamlin, Nathaniel D., E-mail: nh322@cornell.edu [438 Rhodes Hall, Cornell University, Ithaca, NY, 14853 (United States); Seyler, Charles E., E-mail: ces7@cornell.edu [Cornell University, Ithaca, NY, 14853 (United States)

    2014-12-15

    We discuss the incorporation of relativistic modeling capabilities into the PERSEUS extended MHD simulation code for high-energy-density (HED) plasmas, and present the latest hybrid X-pinch simulation results. The use of fully relativistic equations enables the model to remain self-consistent in simulations of such relativistic phenomena as X-pinches and laser-plasma interactions. By suitable formulation of the relativistic generalized Ohm’s law as an evolution equation, we have reduced the recovery of primitive variables, a major technical challenge in relativistic codes, to a straightforward algebraic computation. Our code recovers expected results in the non-relativistic limit, and reveals new physics in the modeling of electron beam acceleration following an X-pinch. Through the use of a relaxation scheme, relativistic PERSEUS is able to handle nine orders of magnitude in density variation, making it the first fluid code, to our knowledge, that can simulate relativistic HED plasmas.

  7. Heterogeneous Speed Profiles in Discrete Models for Pedestrian Simulation

    OpenAIRE

    Bandini, Stefania; Crociani, Luca; Vizzari, Giuseppe

    2014-01-01

    Discrete pedestrian simulation models are viable alternatives to particle based approaches based on a continuous spatial representation. The effects of discretisation, however, also imply some difficulties in modelling certain phenomena that can be observed in reality. This paper focuses on the possibility to manage heterogeneity in the walking speed of the simulated population of pedestrians by modifying an existing multi-agent model extending the floor field approach. Whereas some discrete ...

  8. Verilog-A modeling of SPAD for circuit simulations

    Science.gov (United States)

    Yang, Hong-jiao; Jin, Xiang-liang; Zhou, Xiao-ya; Chen, Chang-ping; Luo, Jun

    2013-08-01

    A behavior mode for simulating single-photon avalanche diodes is presented. The model is developed using Verilog-A description language. The derived model is able to describe the static, the dynamic behavior, the triggering, the self-sustaining and the self-quenching processes, and it also correctly characterizes the reverse current-voltage curve. Simulation results confirmed the validity of the proposed model.

  9. Integrated simulation and modeling capability for alternate magnetic fusion concepts

    Energy Technology Data Exchange (ETDEWEB)

    Cohen, B. I.; Hooper, E.B.; Jarboe, T. R.; LoDestro, L. L.; Pearlstein, L. D.; Prager, S. C.; Sarff, J. S.

    1998-11-03

    This document summarizes a strategic study addressing the development of a comprehensive modeling and simulation capability for magnetic fusion experiments with particular emphasis on devices that are alternatives to the mainline tokamak device. A code development project in this area supports two defined strategic thrust areas in the Magnetic Fusion Energy Program: (1) comprehensive simulation and modeling of magnetic fusion experiments and (2) development, operation, and modeling of magnetic fusion alternate- concept experiment

  10. Hydrated Electron Transfer to Nucleobases in Aqueous Solutions Revealed by Ab Initio Molecular Dynamics Simulations.

    Science.gov (United States)

    Zhao, Jing; Wang, Mei; Fu, Aiyun; Yang, Hongfang; Bu, Yuxiang

    2015-08-03

    We present an ab initio molecular dynamics (AIMD) simulation study into the transfer dynamics of an excess electron from its cavity-shaped hydrated electron state to a hydrated nucleobase (NB)-bound state. In contrast to the traditional view that electron localization at NBs (G/A/C/T), which is the first step for electron-induced DNA damage, is related only to dry or prehydrated electrons, and a fully hydrated electron no longer transfers to NBs, our AIMD simulations indicate that a fully hydrated electron can still transfer to NBs. We monitored the transfer dynamics of fully hydrated electrons towards hydrated NBs in aqueous solutions by using AIMD simulations and found that due to solution-structure fluctuation and attraction of NBs, a fully hydrated electron can transfer to a NB gradually over time. Concurrently, the hydrated electron cavity gradually reorganizes, distorts, and even breaks. The transfer could be completed in about 120-200 fs in four aqueous NB solutions, depending on the electron-binding ability of hydrated NBs and the structural fluctuation of the solution. The transferring electron resides in the π*-type lowest unoccupied molecular orbital of the NB, which leads to a hydrated NB anion. Clearly, the observed transfer of hydrated electrons can be attributed to the strong electron-binding ability of hydrated NBs over the hydrated electron cavity, which is the driving force, and the transfer dynamics is structure-fluctuation controlled. This work provides new insights into the evolution dynamics of hydrated electrons and provides some helpful information for understanding the DNA-damage mechanism in solution. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  11. Methodology for characterizing modeling and discretization uncertainties in computational simulation

    Energy Technology Data Exchange (ETDEWEB)

    ALVIN,KENNETH F.; OBERKAMPF,WILLIAM L.; RUTHERFORD,BRIAN M.; DIEGERT,KATHLEEN V.

    2000-03-01

    This research effort focuses on methodology for quantifying the effects of model uncertainty and discretization error on computational modeling and simulation. The work is directed towards developing methodologies which treat model form assumptions within an overall framework for uncertainty quantification, for the purpose of developing estimates of total prediction uncertainty. The present effort consists of work in three areas: framework development for sources of uncertainty and error in the modeling and simulation process which impact model structure; model uncertainty assessment and propagation through Bayesian inference methods; and discretization error estimation within the context of non-deterministic analysis.

  12. Four Order Electrostatic Discharge Circuit Model and its Simulation

    Directory of Open Access Journals (Sweden)

    Xiaodong Wang

    2012-12-01

    Full Text Available According to the international electrotechnical commission issued IEC61000-4-2 test standard, through the electrostatic discharge current waveform characteristics analysis and numerical experiment method, and construct a new ESD current expression. Using Laplasse transform, established the ESD system mathematical model. According to the mathematical model, construction of passive four order ESD system circuit model and active four order ESD system circuit model, and simulation. The simulation results meet the IEC61000-4-2 standard, and verify the consistency of the ESD current expression, the mathematical model and the circuit model.

  13. Optimization of Operations Resources via Discrete Event Simulation Modeling

    Science.gov (United States)

    Joshi, B.; Morris, D.; White, N.; Unal, R.

    1996-01-01

    The resource levels required for operation and support of reusable launch vehicles are typically defined through discrete event simulation modeling. Minimizing these resources constitutes an optimization problem involving discrete variables and simulation. Conventional approaches to solve such optimization problems involving integer valued decision variables are the pattern search and statistical methods. However, in a simulation environment that is characterized by search spaces of unknown topology and stochastic measures, these optimization approaches often prove inadequate. In this paper, we have explored the applicability of genetic algorithms to the simulation domain. Genetic algorithms provide a robust search strategy that does not require continuity and differentiability of the problem domain. The genetic algorithm successfully minimized the operation and support activities for a space vehicle, through a discrete event simulation model. The practical issues associated with simulation optimization, such as stochastic variables and constraints, were also taken into consideration.

  14. Semiempirical model for nanoscale device simulations

    DEFF Research Database (Denmark)

    Stokbro, Kurt; Petersen, Dan Erik; Smidstrup, Søren;

    2010-01-01

    We present a semiempirical model for calculating electron transport in atomic-scale devices. The model is an extension of the extended Hückel method with a self-consistent Hartree potential that models the effect of an external bias and corresponding charge rearrangements in the device. It is als...

  15. A universal simulator for ecological models

    DEFF Research Database (Denmark)

    Holst, Niels

    2013-01-01

    Software design is an often neglected issue in ecological models, even though bad software design often becomes a hindrance for re-using, sharing and even grasping an ecological model. In this paper, the methodology of agile software design was applied to the domain of ecological models. Thus...

  16. Modeling Physics with Easy Java Simulations

    Science.gov (United States)

    Christian, Wolfgang; Esquembre, Francisco

    2007-01-01

    Modeling has been shown to correct weaknesses of traditional instruction by engaging students in the design of physical models to describe, explain, and predict phenomena. Although the modeling method can be used without computers, the use of computers allows students to study problems that are difficult and time consuming, to visualize their…

  17. Coastal zone simulations with variational Boussinesq modelling

    NARCIS (Netherlands)

    Adytia, Didit

    2012-01-01

    The main challenge in deriving a Boussinesq model for water wave is to model accurately the dispersion and nonlinearity of waves. The dispersion is a depth-dependent relation between the wave speed and the wavelength. A Boussinesq-type model can be derived from the so-called variational principle

  18. Overnight Index Rate: Model, calibration and simulation

    OpenAIRE

    Olga Yashkir; Yuri Yashkir

    2014-01-01

    In this study, the extended Overnight Index Rate (OIR) model is presented. The fitting function for the probability distribution of the OIR daily returns is based on three different Gaussian distributions which provide modelling of the narrow central peak and the wide fat-tailed component. The calibration algorithm for the model is developed and investigated using the historical OIR data.

  19. Overnight Index Rate: Model, calibration and simulation

    Directory of Open Access Journals (Sweden)

    Olga Yashkir

    2014-12-01

    Full Text Available In this study, the extended Overnight Index Rate (OIR model is presented. The fitting function for the probability distribution of the OIR daily returns is based on three different Gaussian distributions which provide modelling of the narrow central peak and the wide fat-tailed component. The calibration algorithm for the model is developed and investigated using the historical OIR data.

  20. Overnight Index Rate: Model, Calibration, and Simulation

    OpenAIRE

    Olga Yashkir; Yuri Yashkir

    2013-01-01

    In this study, the extended Overnight Index Rate (OIR) model is presented. The fitting function for the probability distribution of the OIR daily returns is based on three different Gaussian distributions which provide modelling of the narrow central peak and the wide fat-tailed component. The calibration algorithm for the model is developed and investigated using the historical OIR data.

  1. Molecular Dynamics Simulations Reveal that Water Diffusion between Graphene Oxide Layers is Slow

    Science.gov (United States)

    Devanathan, Ram; Chase-Woods, Dylan; Shin, Yongsoon; Gotthold, David W.

    2016-07-01

    Membranes made of stacked layers of graphene oxide (GO) hold the tantalizing promise of revolutionizing desalination and water filtration if selective transport of molecules can be controlled. We present the findings of an integrated study that combines experiment and molecular dynamics simulation of water intercalated between GO layers. We simulated a range of hydration levels from 1 wt.% to 23.3 wt.% water. The interlayer spacing increased upon hydration from 0.8 nm to 1.1 nm. We also synthesized GO membranes that showed an increase in layer spacing from about 0.7 nm to 0.8 nm and an increase in mass of about 15% on hydration. Water diffusion through GO layers is an order of magnitude slower than that in bulk water, because of strong hydrogen bonded interactions. Most of the water molecules are bound to OH groups even at the highest hydration level. We observed large water clusters that could span graphitic regions, oxidized regions and holes that have been experimentally observed in GO. Slow interlayer diffusion can be consistent with experimentally observed water transport in GO if holes lead to a shorter path length than previously assumed and sorption serves as a key rate-limiting step.

  2. Kinetic features revealed by top-hat electrostatic analysers: numerical simulations and instrument response results

    Science.gov (United States)

    De Marco, Rossana; Marcucci, Maria Federica; Brienza, Daniele; Bruno, Roberto; Consolini, Giuseppe; Perrone, Denise; Valentini, Franceso; Servidio, Sergio; Stabile, Sara; Pezzi, Oreste; Sorriso-Valvo, Luca; Lavraud, Benoit; De Keyser, Johan; Retinò, Alessandro; Fazakerley, Andrew; Wicks, Robert; Vaivads, Andris; Salatti, Mario; Veltri, Pierliugi

    2017-04-01

    Turbulence Heating ObserveR (THOR) is the first mission devoted to study energization, acceleration and heating of turbulent space plasmas, and designed to perform field and particle measurements at kinetic scales in different near-Earth regions and in the solar wind. Solar Orbiter (SolO), together with Solar Probe Plus, will provide the first comprehensive remote and in situ measurements which are critical to establish the fundamental physical links between the Sun's dynamic atmosphere and the turbulent solar wind. The fundamental process of turbulent dissipation is mediated by physical mechanism that occur at a variety of temporal and spatial scales, and most efficiently at the kinetics scales. Hybrid Vlasov-Maxwell simulations of solar-wind turbulence show that kinetic effects manifest as particle beams, production of temperature anisotropies and ring-like modulations, preferential heating of heavy ions. We use a numerical code able to reproduce the response of a typical electrostatic analyzer of top-hat type starting from velocity distribution functions (VDFs) generated by Hybrid Vlasov-Maxwell (HVM) numerical simulations. Here, we show how optimized particle measurements by top-hat analysers can capture the kinetic features injected by turbulence in the VDFs.

  3. Multiwavelength polarimetry and integrated MHD+Polarized Radiation simulation reveal the blazar flaring mechanism

    Science.gov (United States)

    Zhang, Haocheng; Li, Hui; Taylor, Gregory B.

    2017-08-01

    In addition to multiwavelength variability, blazar polarization signatures are highly variable. Optical polarimetry has shown two distinct features: first, in both quiescent and flaring states, blazar polarization degree generally stays around 10% to 30%; second, after major polarization variations, such as polarization angle swings, the polarization degree quickly restores to its initial state. We have performed integrated relativistic magnetohydrodynamic (MHD) + radiation and polarization simulations of the blazar emission region. Our approach evolves the magnetic fields and flows using the first principles, so we can calculate the spatial and temporal dependent polarization signatures and compare them with observations.Our results show that the above two observational trends indicate the blazar flaring region should be strongly magnetized with the magnetic energy density higher than the plasma rest mass energy density. In such an environment, the 3D kink instability may trigger magnetic reconnection to accelerate particles and give rise to flares. In view of future high-energy polarimetry, this integrated MHD+polarization simulation technique will deliver new constraints on jet’s physical conditions and particle acceleration mechanisms.

  4. Modeling neutron guides using Monte Carlo simulations

    CERN Document Server

    Wang, D Q; Crow, M L; Wang, X L; Lee, W T; Hubbard, C R

    2002-01-01

    Four neutron guide geometries, straight, converging, diverging and curved, were characterized using Monte Carlo ray-tracing simulations. The main areas of interest are the transmission of the guides at various neutron energies and the intrinsic time-of-flight (TOF) peak broadening. Use of a delta-function time pulse from a uniform Lambert neutron source allows one to quantitatively simulate the effect of guides' geometry on the TOF peak broadening. With a converging guide, the intensity and the beam divergence increases while the TOF peak width decreases compared with that of a straight guide. By contrast, use of a diverging guide decreases the intensity and the beam divergence, and broadens the width (in TOF) of the transmitted neutron pulse.

  5. Timing interactions in social simulations: The voter model

    CERN Document Server

    Fernández-Gracia, Juan; Miguel, Maxi San

    2013-01-01

    The recent availability of huge high resolution datasets on human activities has revealed the heavy-tailed nature of the interevent time distributions. In social simulations of interacting agents the standard approach has been to use Poisson processes to update the state of the agents, which gives rise to very homogeneous activity patterns with a well defined characteristic interevent time. As a paradigmatic opinion model we investigate the voter model and review the standard update rules and propose two new update rules which are able to account for heterogeneous activity patterns. For the new update rules each node gets updated with a probability that depends on the time since the last event of the node, where an event can be an update attempt (exogenous update) or a change of state (endogenous update). We find that both update rules can give rise to power law interevent time distributions, although the endogenous one more robustly. Apart from that for the exogenous update rule and the standard update rules...

  6. Modeling and Simulation for Fuel Cell Polymer Electrolyte Membrane

    Directory of Open Access Journals (Sweden)

    Takahiro Hayashi

    2013-01-01

    Full Text Available We have established methods to evaluate key properties that are needed to commercialize polyelectrolyte membranes for fuel cell electric vehicles such as water diffusion, gas permeability, and mechanical strength. These methods are based on coarse-graining models. For calculating water diffusion and gas permeability through the membranes, the dissipative particle dynamics–Monte Carlo approach was applied, while mechanical strength of the hydrated membrane was simulated by coarse-grained molecular dynamics. As a result of our systematic search and analysis, we can now grasp the direction necessary to improve water diffusion, gas permeability, and mechanical strength. For water diffusion, a map that reveals the relationship between many kinds of molecular structures and diffusion constants was obtained, in which the direction to enhance the diffusivity by improving membrane structure can be clearly seen. In order to achieve high mechanical strength, the molecular structure should be such that the hydrated membrane contains narrow water channels, but these might decrease the proton conductivity. Therefore, an optimal design of the polymer structure is needed, and the developed models reviewed here make it possible to optimize these molecular structures.

  7. ISM Simulations: An Overview of Models

    CERN Document Server

    de Avillez, M A; Asgekar, A; Spitoni, E

    2013-01-01

    Until recently the dynamical evolution of the interstellar medium (ISM) was simulated using collisional ionization equilibrium (CIE) conditions. However, the ISM is a dynamical system, in which the plasma is naturally driven out of equilibrium due to atomic and dynamic processes operating on different timescales. A step forward in the field comprises a multi-fluid approach taking into account the joint thermal and dynamical evolutions of the ISM gas.

  8. Small scale magnetosphere: Laboratory experiment, physical model and Hall MHD simulation

    CERN Document Server

    Shaikhislamov, I F; Zakharov, Yu P; Boyarintsev, E L; Melekhov, A V; Posukh, V G; Ponomarenko, A G

    2011-01-01

    A problem of magnetosphere formation on ion inertia scale around weakly magnetized bodies is investigated by means of laboratory experiment, analytical analysis and 2.5D Hall MHD simulation. Experimental evidence of specific magnetic field generated by the Hall term is presented. Direct comparison of regimes with small and large ion inertia length revealed striking differences in measured magnetopause position and plasma stand off distance. Analytical model is presented, which explains such basic features of mini-magnetosphere observed in previous kinetic simulations as disappearance of bow shock and plasma stopping at Stoermer particle limit instead of pressure balance distance. Numerical simulation is found to be in a good agreement with experiments and analytical model. It gives detailed spatial structure of Hall field and reveals that while ions penetrate deep inside mini-magnetosphere electrons overflow around it along magnetopause boundary.

  9. Impact of reactive settler models on simulated WWTP performance.

    Science.gov (United States)

    Gernaey, K V; Jeppsson, U; Batstone, D J; Ingildsen, P

    2006-01-01

    Including a reactive settler model in a wastewater treatment plant model allows representation of the biological reactions taking place in the sludge blanket in the settler, something that is neglected in many simulation studies. The idea of including a reactive settler model is investigated for an ASM1 case study. Simulations with a whole plant model including the non-reactive Takács settler model are used as a reference, and are compared to simulation results considering two reactive settler models. The first is a return sludge model block removing oxygen and a user-defined fraction of nitrate, combined with a non-reactive Takács settler. The second is a fully reactive ASM1 Takács settler model. Simulations with the ASM1 reactive settler model predicted a 15.3% and 7.4% improvement of the simulated N removal performance, for constant (steady-state) and dynamic influent conditions respectively. The oxygen/nitrate return sludge model block predicts a 10% improvement of N removal performance under dynamic conditions, and might be the better modelling option for ASM1 plants: it is computationally more efficient and it will not overrate the importance of decay processes in the settler.

  10. Crystal structures and molecular dynamics simulations of thermophilic malate dehydrogenase reveal critical loop motion for co-substrate binding.

    Science.gov (United States)

    Hung, Chih-Hung; Hwang, Tzann-Shun; Chang, Yu-Yung; Luo, Huei-Ru; Wu, Szu-Pei; Hsu, Chun-Hua

    2013-01-01

    Malate dehydrogenase (MDH) catalyzes the conversion of oxaloacetate and malate by using the NAD/NADH coenzyme system. The system is used as a conjugate for enzyme immunoassays of a wide variety of compounds, such as illegal drugs, drugs used in therapeutic applications and hormones. We elucidated the biochemical and structural features of MDH from Thermus thermophilus (TtMDH) for use in various biotechnological applications. The biochemical characterization of recombinant TtMDH revealed greatly increased activity above 60 °C and specific activity of about 2,600 U/mg with optimal temperature of 90 °C. Analysis of crystal structures of apo and NAD-bound forms of TtMDH revealed a slight movement of the binding loop and few structural elements around the co-substrate binding packet in the presence of NAD. The overall structures did not change much and retained all related positions, which agrees with the CD analyses. Further molecular dynamics (MD) simulation at higher temperatures were used to reconstruct structures from the crystal structure of TtMDH. Interestingly, at the simulated structure of 353 K, a large change occurred around the active site such that with increasing temperature, a mobile loop was closed to co-substrate binding region. From biochemical characterization, structural comparison and MD simulations, the thermal-induced conformational change of the co-substrate binding loop of TtMDH may contribute to the essential movement of the enzyme for admitting NAD and may benefit the enzyme's activity.

  11. Statistical Modeling of Large-Scale Scientific Simulation Data

    Energy Technology Data Exchange (ETDEWEB)

    Eliassi-Rad, T; Baldwin, C; Abdulla, G; Critchlow, T

    2003-11-15

    With the advent of massively parallel computer systems, scientists are now able to simulate complex phenomena (e.g., explosions of a stars). Such scientific simulations typically generate large-scale data sets over the spatio-temporal space. Unfortunately, the sheer sizes of the generated data sets make efficient exploration of them impossible. Constructing queriable statistical models is an essential step in helping scientists glean new insight from their computer simulations. We define queriable statistical models to be descriptive statistics that (1) summarize and describe the data within a user-defined modeling error, and (2) are able to answer complex range-based queries over the spatiotemporal dimensions. In this chapter, we describe systems that build queriable statistical models for large-scale scientific simulation data sets. In particular, we present our Ad-hoc Queries for Simulation (AQSim) infrastructure, which reduces the data storage requirements and query access times by (1) creating and storing queriable statistical models of the data at multiple resolutions, and (2) evaluating queries on these models of the data instead of the entire data set. Within AQSim, we focus on three simple but effective statistical modeling techniques. AQSim's first modeling technique (called univariate mean modeler) computes the ''true'' (unbiased) mean of systematic partitions of the data. AQSim's second statistical modeling technique (called univariate goodness-of-fit modeler) uses the Andersen-Darling goodness-of-fit method on systematic partitions of the data. Finally, AQSim's third statistical modeling technique (called multivariate clusterer) utilizes the cosine similarity measure to cluster the data into similar groups. Our experimental evaluations on several scientific simulation data sets illustrate the value of using these statistical models on large-scale simulation data sets.

  12. Modeling and Real-Time Simulation of UPFC

    Science.gov (United States)

    Kimura, Misao; Takahashi, Choei; Kishibe, Hideto; Miyazaki, Yasuyuki; Noro, Yasuhiro; Iio, Naotaka

    We have developed a digital real time simulator of Power Electronics Controllers, so called FACTS (Flexible AC Transmission Systems) Controllers and/or Custom Power by using MATLABTM/SIMULINKTM and dSPACETM System. This paper describes the modeling and the calculation accuracy of a UPFC (Unified Power Flow Controller) model. Hence the developed simulator operates at a large time step, in order to improve simulation accuracy, a correction processing of the switching delay is implemented into the UPFC model. Calculation accuracy of the real time UPFC model is the same level as EMTDCTM results. We confirm stable operation of the developed UPFC model with connecting a commercial real time digital simulator (RTDSTM).

  13. Modelling and simulation of superalloys. Book of abstracts

    Energy Technology Data Exchange (ETDEWEB)

    Rogal, Jutta; Hammerschmidt, Thomas; Drautz, Ralf (eds.)

    2014-07-01

    Superalloys are multi-component materials with complex microstructures that offer unique properties for high-temperature applications. The complexity of the superalloy materials makes it particularly challenging to obtain fundamental insight into their behaviour from the atomic structure to turbine blades. Recent advances in modelling and simulation of superalloys contribute to a better understanding and prediction of materials properties and therefore offer guidance for the development of new alloys. This workshop will give an overview of recent progress in modelling and simulation of materials for superalloys, with a focus on single crystal Ni-base and Co-base alloys. Topics will include electronic structure methods, atomistic simulations, microstructure modelling and modelling of microstructural evolution, solidification and process simulation as well as the modelling of phase stability and thermodynamics.

  14. A dynamic skull model for simulation of cerebral cortex folding.

    Science.gov (United States)

    Chen, Hanbo; Guo, Lei; Nie, Jingxin; Zhang, Tuo; Hu, Xintao; Liu, Tianming

    2010-01-01

    The mechanisms of human cerebral cortex folding and their interactions during brain development are largely unknown, partly due to the difficulties in biological experiments and data acquisition for the developing fetus brain. Computational modeling and simulation provide a novel approach to the understanding of cortex folding processes in normal or aberrant neurodevelopment. Based on our recently developed computational model of the cerebral cortex folding using neuronal growth model and mechanical skull constraint, this paper presents a computational dynamic model of the brain skull that regulates the cortical folding simulation. Our simulation results show that the dynamic skull model is more biologically realistic and significantly improves our cortical folding simulation results. This work provides further computational support to the hypothesis that skull is an important regulator of cortical folding.

  15. Automatic identification of model reductions for discrete stochastic simulation

    Science.gov (United States)

    Wu, Sheng; Fu, Jin; Li, Hong; Petzold, Linda

    2012-07-01

    Multiple time scales in cellular chemical reaction systems present a challenge for the efficiency of stochastic simulation. Numerous model reductions have been proposed to accelerate the simulation of chemically reacting systems by exploiting time scale separation. However, these are often identified and deployed manually, requiring expert knowledge. This is time-consuming, prone to error, and opportunities for model reduction may be missed, particularly for large models. We propose an automatic model analysis algorithm using an adaptively weighted Petri net to dynamically identify opportunities for model reductions for both the stochastic simulation algorithm and tau-leaping simulation, with no requirement of expert knowledge input. Results are presented to demonstrate the utility and effectiveness of this approach.

  16. Adaptive deployment of model reductions for tau-leaping simulation.

    Science.gov (United States)

    Wu, Sheng; Fu, Jin; Petzold, Linda R

    2015-05-28

    Multiple time scales in cellular chemical reaction systems often render the tau-leaping algorithm inefficient. Various model reductions have been proposed to accelerate tau-leaping simulations. However, these are often identified and deployed manually, requiring expert knowledge. This is time-consuming and prone to error. In previous work, we proposed a methodology for automatic identification and validation of model reduction opportunities for tau-leaping simulation. Here, we show how the model reductions can be automatically and adaptively deployed during the time course of a simulation. For multiscale systems, this can result in substantial speedups.

  17. An Integrated Simulation Tool for Modeling the Human Circulatory System

    Science.gov (United States)

    Asami, Ken'ichi; Kitamura, Tadashi

    This paper presents an integrated simulation of the circulatory system in physiological movement. The large circulatory system model includes principal organs and functional units in modules in which comprehensive physiological changes such as nerve reflexes, temperature regulation, acid/base balance, O2/CO2 balance, and exercise are simulated. A beat-by-beat heart model, in which the corresponding electrical circuit problems are solved by a numerical analytic method, enables calculation of pulsatile blood flow to the major organs. The integration of different perspectives on physiological changes makes this simulation model applicable for the microscopic evaluation of blood flow under various conditions in the human body.

  18. Microbial Growth Modeling and Simulation Based on Cellular Automata

    Directory of Open Access Journals (Sweden)

    Hong Men

    2013-07-01

    Full Text Available In order to simulate the micro-evolutionary process of the microbial growth, [Methods] in this study, we adopt two-dimensional cellular automata as its growth space. Based on evolutionary mechanism of microbial and cell-cell interactions, we adopt Moore neighborhood and make the transition rules. Finally, we construct the microbial growth model. [Results] It can describe the relationships among the cell growth, division and death. And also can effectively reflect spatial inhibition effect and substrate limitation effect. [Conclusions] The simulation results show that CA model is not only consistent with the classic microbial kinetic model, but also be able to simulate the microbial growth and evolution.

  19. Simulation of a mass-spring model for global deformation

    Institute of Scientific and Technical Information of China (English)

    Tong CUI; Aiguo SONG; Juan WU

    2009-01-01

    This article addresses a largely open problem in haptic simulation and rendering:contact force and deformation modeling for haptic simulation of a discrete globe mass-spring model,especially for global deforma-tion.The mass-spring system is composed of nodes connected with radially distributed springs.We tackle the problem using the theory of virtual work,and relations between the virtual force and nodal displacements are analyzed to obtain elastic deformations.The global deformation is controlled by the total nodal deformations based on a force equation at each node.The simulation results verify the efficiency of the contact force and deformation model with reasonable realism.

  20. Magnetostriction simulation using anisotropic vector Preisach-type models

    Energy Technology Data Exchange (ETDEWEB)

    Adly, A.A. [Cairo Univ., Giza (Egypt). Electric Power and Machines Dept.; Mayergoyz, I.D. [Univ. of Maryland, College Park, MD (United States). Electrical Engineering Dept.

    1996-09-01

    Magnetic materials exhibiting gigantic magnetostriction, especially Terfenol, are currently being widely used in fine positioning and active vibration damping devices. By involving accurate magnetostriction models during design stages, precision of such devices may be significantly enhanced. In this paper a straight-forward approach that employs anisotropic vector Preisach-type hysteresis models in simulating field-stress effects on magnetic materials is presented. Formulation of the proposed model is given and its identification problem is solved. The presented approach has been numerically implemented and numerous digital computer simulations have been performed for Terfenol material. Sample simulation results as well as comparisons with experimentally observed magnetostriction curves are reported in the paper.