WorldWideScience

Sample records for model parallel phase

  1. Phase dynamics modeling of parallel stacks of Josephson junctions

    Science.gov (United States)

    Rahmonov, I. R.; Shukrinov, Yu. M.

    2014-11-01

    The phase dynamics of two parallel connected stacks of intrinsic Josephson junctions (JJs) in high temperature superconductors is numerically investigated. The calculations are based on the system of nonlinear differential equations obtained within the CCJJ + DC model, which allows one to determine the general current-voltage characteristic of the system, as well as each individual stack. The processes with increasing and decreasing base currents are studied. The features in the behavior of the current in each stack of the system due to the switching between the states with rotating and oscillating phases are analyzed.

  2. TWO PHASE FLOW SPLIT MODEL FOR PARALLEL CHANNELS

    African Journals Online (AJOL)

    Ifeanyichukwu Onwuka

    The equations are solved using the Broyden'smethod ... channel system subjected to a two-phase flow transient, and the results have been very .... system pressure, the heat addition rates inside ... three dimensional flows in the LP.

  3. Modelling and simulation of multiple single - phase induction motor in parallel connection

    Directory of Open Access Journals (Sweden)

    Sujitjorn, S.

    2006-11-01

    Full Text Available A mathematical model for parallel connected n-multiple single-phase induction motors in generalized state-space form is proposed in this paper. The motor group draws electric power from one inverter. The model is developed by the dq-frame theory and was tested against four loading scenarios in which satisfactory results were obtained.

  4. Modeling of the phase lag causing fluidelastic instability in a parallel triangular tube array

    Science.gov (United States)

    Khalifa, Ahmed; Weaver, David; Ziada, Samir

    2013-11-01

    Fluidelastic instability is considered a critical flow induced vibration mechanism in tube and shell heat exchangers. It is believed that a finite time lag between tube vibration and fluid response is essential to predict the phenomenon. However, the physical nature of this time lag is not fully understood. This paper presents a fundamental study of this time delay using a parallel triangular tube array with a pitch ratio of 1.54. A computational fluid dynamics (CFD) model was developed and validated experimentally in an attempt to investigate the interaction between tube vibrations and flow perturbations at lower reduced velocities Ur=1-6 and Reynolds numbers Re=2000-12 000. The numerical predictions of the phase lag are in reasonable agreement with the experimental measurements for the range of reduced velocities Ug/fd=6-7. It was found that there are two propagation mechanisms; the first is associated with the acoustic wave propagation at low reduced velocities, Ur<2, and the second mechanism for higher reduced velocities is associated with the vorticity shedding and convection. An empirical model of the two mechanisms is developed and the phase lag predictions are in reasonable agreement with the experimental and numerical measurements. The developed phase lag model is then coupled with the semi-analytical model of Lever and Weaver to predict the fluidelastic stability threshold. Improved predictions of the stability boundaries for the parallel triangular array were achieved. In addition, the present study has explained why fluidelastic instability does not occur below some threshold reduced velocity.

  5. Parallel finite element method for modeling two-phase flow processes in porous media using PETSc solver

    Science.gov (United States)

    Wang, W.; Zehner, B.; Böttcher, N.; Goerke, U.; Kolditz, O.

    2013-12-01

    Numerical modeling of the two-phase flow process in porous media for real applications, e.g. CO2 storage processes in saline aquifers, is computationally expensive due to the complexity and the non-linearity of the observed physical processes. In such modeling, a fine discretization of the considered domain is normally needed for a high degree of accuracy, and it leads to the requirement of extremely high computational resources. This work focuses on the parallel simulation of the two-phase flow process in porous media. The Galerkin finite element method is used to solve the governing equations. Based on the overlapping domain decomposition approach, the PETSc package is employed to parallelize the global equation assembly and the linear solver, respectively. A numerical model based on the real test site Ketzin in Germany is adopted for parallel computing. The model domain is discretized with more than four million tetrahedral elements. The parallel simulations are carried out on a Linux cluster with different number of cores. The obtained speedup shows a good scalability of the current parallel finite element approach of the two-phase flow modeling in geological CO2 storage applications.

  6. Reduced-order Structure-preserving Model for Parallel-connected Three-phase Grid-tied Inverters: Preprint

    Energy Technology Data Exchange (ETDEWEB)

    Johnson, Brian B [National Renewable Energy Laboratory (NREL), Golden, CO (United States)

    2017-08-31

    Given that next-generation infrastructures will contain large numbers of grid-connected inverters and these interfaces will be satisfying a growing fraction of system load, it is imperative to analyze the impacts of power electronics on such systems. However, since each inverter model has a relatively large number of dynamic states, it would be impractical to execute complex system models where the full dynamics of each inverter are retained. To address this challenge, we derive a reduced-order structure-preserving model for parallel-connected grid-tied three-phase inverters. Here, each inverter in the system is assumed to have a full-bridge topology, LCL filter at the point of common coupling, and the control architecture for each inverter includes a current controller, a power controller, and a phase-locked loop for grid synchronization. We outline a structure-preserving reduced-order inverter model for the setting where the parallel inverters are each designed such that the filter components and controller gains scale linearly with the power rating. By structure preserving, we mean that the reduced-order three-phase inverter model is also composed of an LCL filter, a power controller, current controller, and PLL. That is, we show that the system of parallel inverters can be modeled exactly as one aggregated inverter unit and this equivalent model has the same number of dynamical states as an individual inverter in the paralleled system. Numerical simulations validate the reduced-order models.

  7. Modeling, analysis, and design of stationary reference frame droop controlled parallel three-phase voltage source inverters

    DEFF Research Database (Denmark)

    Vasquez, Juan Carlos; Guerrero, Josep M.; Savaghebi, Mehdi;

    2013-01-01

    Power electronics based MicroGrids consist of a number of voltage source inverters (VSIs) operating in parallel. In this paper, the modeling, control design, and stability analysis of parallel connected three-phase VSIs are derived. The proposed voltage and current inner control loops and the mat......Power electronics based MicroGrids consist of a number of voltage source inverters (VSIs) operating in parallel. In this paper, the modeling, control design, and stability analysis of parallel connected three-phase VSIs are derived. The proposed voltage and current inner control loops...... and the mathematical models of the VSIs are based on the stationary reference frame. A hierarchical control scheme for the paralleled VSI system is developed comprising two levels. The primary control includes the droop method and the virtual impedance loops, in order to share active and reactive power. The secondary...... control restores the frequency and amplitude deviations produced by the primary control. Also, a synchronization algorithm is presented in order to connect the MicroGrid to the grid. Experimental results are provided to validate the performance and robustness of the parallel VSI system control...

  8. Multi-GPUs parallel computation of dendrite growth in forced convection using the phase-field-lattice Boltzmann model

    Science.gov (United States)

    Sakane, Shinji; Takaki, Tomohiro; Rojas, Roberto; Ohno, Munekazu; Shibuta, Yasushi; Shimokawabe, Takashi; Aoki, Takayuki

    2017-09-01

    Melt flow drastically changes dendrite morphology during the solidification of pure metals and alloys. Numerical simulation of dendrite growth in the presence of the melt flow is crucial for the accurate prediction and control of the solidification microstructure. However, accurate simulations are difficult because of the large computational costs required. In this study, we develop a parallel computational scheme using multiple graphics processing units (GPUs) for a very large-scale three-dimensional phase-field-lattice Boltzmann simulation. In the model, a quantitative phase field model, which can accurately simulate the dendrite growth of a dilute binary alloy, and a lattice Boltzmann model to simulate the melt flow are coupled to simulate the dendrite growth in the melt flow. By performing very large-scale simulations using the developed scheme, we demonstrate the applicability of multi-GPUs parallel computation to the systematical large-scale-simulations of dendrite growth with the melt flow.

  9. Small-Signal Modeling, Analysis and Testing of Parallel Three-Phase-Inverters with A Novel Autonomous Current Sharing Controller

    DEFF Research Database (Denmark)

    Guan, Yajuan; Quintero, Juan Carlos Vasquez; Guerrero, Josep M.

    2015-01-01

    active or reactive power, instead it uses a virtual impedance loop and a SFR phase-locked loop. The small-signal model of the system was developed for the autonomous operation of inverter-based microgrid with the proposed controller. The developed model shows large stability margin and fast transient......A novel simple and effective autonomous currentsharing controller for parallel three-phase inverters is employed in this paper. The novel controller is able to endow to the system high speed response and precision in contrast to the conventional droop control as it does not require calculating any...... response of the system. This model can help identifying the origin of each of the modes and possible feedback signals for design of controllers to improve the system stability. Experimental results from two parallel 2.2 kVA inverters verify the effectiveness of the novel control approach....

  10. Parallel Software Model Checking

    Science.gov (United States)

    2015-01-08

    JAN 2015 2. REPORT TYPE N/A 3. DATES COVERED 4. TITLE AND SUBTITLE Parallel Software Model Checking 5a. CONTRACT NUMBER 5b. GRANT NUMBER...AND ADDRESS(ES) Software Engineering Institute Carnegie Mellon University Pittsburgh, PA 15213 8. PERFORMING ORGANIZATION REPORT NUMBER 9...3: ∧ ≥ 10 ∧ ≠ 10 ⇒ : Parallel Software Model Checking Team Members Sagar Chaki, Arie Gurfinkel

  11. Modeling, analysis, and design of stationary reference frame droop controlled parallel three-phase voltage source inverters

    DEFF Research Database (Denmark)

    Vasquez, Juan Carlos; Guerrero, Josep M.; Savaghebi, Mehdi

    2011-01-01

    and discussed. Experimental results are provided to validate the performance and robustness of the VSIs functionality during Islanded and grid-connected operations, allowing a seamless transition between these modes through control hierarchies by regulating frequency and voltage, main-grid interactivity......Power electronics based microgrids consist of a number of voltage source inverters (VSIs) operating in parallel. In this paper, the modeling, control design, and stability analysis of three-phase VSIs are derived. The proposed voltage and current inner control loops and the mathematical models...... the frequency and amplitude deviations produced by the primary control. And the tertiary control regulates the power flow between the grid and the microgrid. Also, a synchronization algorithm is presented in order to connect the microgrid to the grid. The evaluation of the hierarchical control is presented...

  12. Three-dimensional two-phase flow model of proton exchange membrane fuel cell with parallel gas distributors

    Science.gov (United States)

    Liu, Xunliang; Lou, Guofeng; Wen, Zhi

    A non-isothermal, steady-state, three-dimensional (3D), two-phase, multicomponent transport model is developed for proton exchange membrane (PEM) fuel cell with parallel gas distributors. A key feature of this work is that a detailed membrane model is developed for the liquid water transport with a two-mode water transfer condition, accounting for the non-equilibrium humidification of membrane with the replacement of an equilibrium assumption. Another key feature is that water transport processes inside electrodes are coupled and the balance of water flux is insured between anode and cathode during the modeling. The model is validated by the comparison of predicted cell polarization curve with experimental data. The simulation is performed for water vapor concentration field of reactant gases, water content distribution in the membrane, liquid water velocity field and liquid water saturation distribution inside the cathode. The net water flux and net water transport coefficient values are obtained at different current densities in this work, which are seldom discussed in other modeling works. The temperature distribution inside the cell is also simulated by this model.

  13. Transfer function modeling of parallel connected two three-phase induction motor implementation using LabView platform

    DEFF Research Database (Denmark)

    Gunabalan, R.; Sanjeevikumar, P.; Blaabjerg, Frede

    2015-01-01

    This paper presents the transfer function modeling and stability analysis of two induction motors of same ratings and parameters connected in parallel. The induction motors are controlled by a single inverter and the entire drive system is modeled using transfer function in LabView. Further, the ...

  14. Parallel Digital Phase-Locked Loops

    Science.gov (United States)

    Sadr, Ramin; Shah, Biren N.; Hinedi, Sami M.

    1995-01-01

    Wide-band microwave receivers of proposed type include digital phase-locked loops in which band-pass filtering and down-conversion of input signals implemented by banks of multirate digital filters operating in parallel. Called "parallel digital phase-locked loops" to distinguish them from other digital phase-locked loops. Systems conceived as cost-effective solution to problem of filtering signals at high sampling rates needed to accommodate wide input frequency bands. Each of M filters process 1/M of spectrum of signal.

  15. Parallel solid-phase synthesis of diaryltriazoles

    Directory of Open Access Journals (Sweden)

    Matthias Wrobel

    2012-07-01

    Full Text Available A series of substituted diaryltriazoles was prepared by a solid-phase-synthesis protocol using a modified Wang resin. The copper(I- or ruthenium(II-catalyzed 1,3-cycloaddition on the polymer bead allowed a rapid synthesis of the target compounds in a parallel fashion with in many cases good to excellent yields. Substituted diaryltriazoles resemble a molecular structure similar to established terphenyl-alpha-helix peptide mimics and have therefore the potential to act as selective inhibitors for protein–protein interactions.

  16. Parallel imaging methods for phased array MRI

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    Two parallel methods for magnetic resonance imaging (MRI) using radio frequency (RF) phased array surface coils, named spatial local Fourier encoding (SLFE) and spatial RF encoding (SRFE), are presented. The MR signals are acquired from separate channels across the coils, each of which covers a sub-FOV (field-of-view) in a parallel fashion, and the acquired data are combined to form an image of entire FOV. These two parallel encoding techniques can accelerate MR imaging greatly, yet associated artifact may appear, although the SLFE is an effective image reconstruction method which can reduce the localized artifact in some degrees. By the SRFE, RF coil array can be utilized for spatial encoding through a specialized coil design. The images are acquired in a snapshot with a high signal-to-noise ratio (SNR) without the costly gradient system, resulting in great saving of cost. Both mutual induction and aliasing effect of adjacent coils are critical to the success of SRFE. The strategies of inverse source problem and wavelet transform (WT) can be employed to eliminate them. The results simulated by MATLAB are reported.

  17. Cellular automata a parallel model

    CERN Document Server

    Mazoyer, J

    1999-01-01

    Cellular automata can be viewed both as computational models and modelling systems of real processes. This volume emphasises the first aspect. In articles written by leading researchers, sophisticated massive parallel algorithms (firing squad, life, Fischer's primes recognition) are treated. Their computational power and the specific complexity classes they determine are surveyed, while some recent results in relation to chaos from a new dynamic systems point of view are also presented. Audience: This book will be of interest to specialists of theoretical computer science and the parallelism challenge.

  18. Statistical correlations and risk analyses techniques for a diving dual phase bubble model and data bank using massively parallel supercomputers.

    Science.gov (United States)

    Wienke, B R; O'Leary, T R

    2008-05-01

    Linking model and data, we detail the LANL diving reduced gradient bubble model (RGBM), dynamical principles, and correlation with data in the LANL Data Bank. Table, profile, and meter risks are obtained from likelihood analysis and quoted for air, nitrox, helitrox no-decompression time limits, repetitive dive tables, and selected mixed gas and repetitive profiles. Application analyses include the EXPLORER decompression meter algorithm, NAUI tables, University of Wisconsin Seafood Diver tables, comparative NAUI, PADI, Oceanic NDLs and repetitive dives, comparative nitrogen and helium mixed gas risks, USS Perry deep rebreather (RB) exploration dive,world record open circuit (OC) dive, and Woodville Karst Plain Project (WKPP) extreme cave exploration profiles. The algorithm has seen extensive and utilitarian application in mixed gas diving, both in recreational and technical sectors, and forms the bases forreleased tables and decompression meters used by scientific, commercial, and research divers. The LANL Data Bank is described, and the methods used to deduce risk are detailed. Risk functions for dissolved gas and bubbles are summarized. Parameters that can be used to estimate profile risk are tallied. To fit data, a modified Levenberg-Marquardt routine is employed with L2 error norm. Appendices sketch the numerical methods, and list reports from field testing for (real) mixed gas diving. A Monte Carlo-like sampling scheme for fast numerical analysis of the data is also detailed, as a coupled variance reduction technique and additional check on the canonical approach to estimating diving risk. The method suggests alternatives to the canonical approach. This work represents a first time correlation effort linking a dynamical bubble model with deep stop data. Supercomputing resources are requisite to connect model and data in application.

  19. Parallel computing in enterprise modeling.

    Energy Technology Data Exchange (ETDEWEB)

    Goldsby, Michael E.; Armstrong, Robert C.; Shneider, Max S.; Vanderveen, Keith; Ray, Jaideep; Heath, Zach; Allan, Benjamin A.

    2008-08-01

    This report presents the results of our efforts to apply high-performance computing to entity-based simulations with a multi-use plugin for parallel computing. We use the term 'Entity-based simulation' to describe a class of simulation which includes both discrete event simulation and agent based simulation. What simulations of this class share, and what differs from more traditional models, is that the result sought is emergent from a large number of contributing entities. Logistic, economic and social simulations are members of this class where things or people are organized or self-organize to produce a solution. Entity-based problems never have an a priori ergodic principle that will greatly simplify calculations. Because the results of entity-based simulations can only be realized at scale, scalable computing is de rigueur for large problems. Having said that, the absence of a spatial organizing principal makes the decomposition of the problem onto processors problematic. In addition, practitioners in this domain commonly use the Java programming language which presents its own problems in a high-performance setting. The plugin we have developed, called the Parallel Particle Data Model, overcomes both of these obstacles and is now being used by two Sandia frameworks: the Decision Analysis Center, and the Seldon social simulation facility. While the ability to engage U.S.-sized problems is now available to the Decision Analysis Center, this plugin is central to the success of Seldon. Because Seldon relies on computationally intensive cognitive sub-models, this work is necessary to achieve the scale necessary for realistic results. With the recent upheavals in the financial markets, and the inscrutability of terrorist activity, this simulation domain will likely need a capability with ever greater fidelity. High-performance computing will play an important part in enabling that greater fidelity.

  20. A Parallel Programming Model With Sequential Semantics

    Science.gov (United States)

    1996-01-01

    Parallel programming is more difficult than sequential programming in part because of the complexity of reasoning, testing, and debugging in the...context of concurrency. In the thesis, we present and investigate a parallel programming model that provides direct control of parallelism in a notation

  1. A parallel-pipelining software process model

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Software process is a framework for effective and timely delivery of software system. The framework plays a crucial role for software success. However, the development of large-scale software still faces the crisis of high risks, low quality, high costs and long cycle time.This paper proposed a three-phase parallel-pipelining software process model for improving speed and productivity, and reducing software costs and risks without sacrificing software quality. In this model, two strategies were presented. One strategy, based on subsystem-cost priority, Was used to prevent software development cost wasting and to reduce software complexity as well; the other strategy, used for balancing subsystem complexity, was designed to reduce the software complexity in the later development stages. Moreover. The proposed function-detailed and workload-simplified subsystem pipelining software process model presents much higher parallelity than the concurrent incremental model. Finally, the component-based product line technology not only ensures software quality and further reduces cycle time, software costs. And software risks but also sufficiently and rationally utilizes previous software product resources and enhances the competition ability of software development organizations.

  2. PDDP, A Data Parallel Programming Model

    Directory of Open Access Journals (Sweden)

    Karen H. Warren

    1996-01-01

    Full Text Available PDDP, the parallel data distribution preprocessor, is a data parallel programming model for distributed memory parallel computers. PDDP implements high-performance Fortran-compatible data distribution directives and parallelism expressed by the use of Fortran 90 array syntax, the FORALL statement, and the WHERE construct. Distributed data objects belong to a global name space; other data objects are treated as local and replicated on each processor. PDDP allows the user to program in a shared memory style and generates codes that are portable to a variety of parallel machines. For interprocessor communication, PDDP uses the fastest communication primitives on each platform.

  3. Decoupling Control Strategy for Single Phase SPWM Parallel Inverters

    Institute of Scientific and Technical Information of China (English)

    Shun-Gang Xu; Jian-Ping Xu; Tai-Qiang Cao

    2009-01-01

    A decoupling control strategy of inverter parallel system is proposed based on the equivalent output impedance of single phase voltage source SPWM (sinusoidal pulse width modulation) inverter. The active power and reactive power are calculated in terms of output voltage and current of the inverter, and sent to the other inverters in the parallel system via controller area network (CAN) bus. By calculating and decoupling the circumfluence of the active power and reactive power, the inverters can share load current via the regulation of the reference-signal phase and amplitude. Experimental results of an 110V/2kVA inverter parallel system show the feasibility of the decoupling control strategy.

  4. A Topological Model for Parallel Algorithm Design

    Science.gov (United States)

    1991-09-01

    New York, 1989. 108. J. Dugundji . Topology . Allen and Bacon, Rockleigh, NJ, 1966. 109. R. Duncan. A Survey of Parallel Computer Architectures. IEEE...Approved for public release; distribition unlimited 4N1f-e AFIT/DS/ENG/91-02 A TOPOLOGICAL MODEL FOR PARALLEL ALGORITHM DESIGN DISSERTATION Presented to...DC 20503. 4. TITLE AND SUBTITLE 5. FUNDING NUMBERS A Topological Model For Parallel Algorithm Design 6. AUTHOR(S) Jeffrey A Simmers, Captain, USAF 7

  5. Numerical Simulation of Multi-phase Flow in Porous Media on Parallel Computers

    CERN Document Server

    Liu, Hui; Chen, Zhangxin; Luo, Jia; Deng, Hui; He, Yanfeng

    2016-01-01

    This paper is concerned with developing parallel computational methods for two-phase flow on distributed parallel computers; techniques for linear solvers and nonlinear methods are studied, and the standard and inexact Newton methods are investigated. A multi-stage preconditioner for two-phase flow is proposed and advanced matrix processing strategies are implemented. Numerical experiments show that these computational methods are scalable and efficient, and are capable of simulating large-scale problems with tens of millions of grid blocks using thousands of CPU cores on parallel computers. The nonlinear techniques, preconditioner and matrix processing strategies can also be applied to three-phase black oil, compositional and thermal models.

  6. Two-phase flow instability in a parallel multichannel system

    Institute of Scientific and Technical Information of China (English)

    HOU Suxia

    2009-01-01

    The two-phase flow instabilities observed in through parallel multichannel can be classified into three types, of which only one is intrinsic to parallel multichannel systems. The intrinsic instabilities observed in parallel multichannel system have been studied experimentally. The stable boundary of the flow in such a parallel-channel system are sought, and the nature of inlet flow oscillation in the unstable region has been examined experimentally under various conditions of inlet velocity, heat flux, liquid temperature, cross section of channel and entrance throttling. The results show that parallel multichannel system possess a characteristic oscillation that is quite independent of the magnitude and duration of the initial disturbance, and the stable boundary is influenced by the characteristic frequency of the system as well as by the exit quality when this is low, and upon raising the exit quality and reducing the characteristic frequency, the system increases its instability, and entrance throttling effectively contributes to stabilization of the system.

  7. Parallel Computing of Ocean General Circulation Model

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    This paper discusses the parallel computing of the thirdgeneration Ocea n General Circulation Model (OGCM) from the State Key Laboratory of Numerical Mo deling for Atmospheric Science and Geophysical Fluid Dynamics(LASG),Institute of Atmosphere Physics(IAP). Meanwhile, several optimization strategies for paralle l computing of OGCM (POGCM) on Scalable Shared Memory Multiprocessor (S2MP) are presented. Using Message Passing Interface (MPI), we obtain super linear speedup on SGI Origin 2000 for parallel OGCM(POGCM) after optimization.

  8. Structured building model reduction toward parallel simulation

    Energy Technology Data Exchange (ETDEWEB)

    Dobbs, Justin R. [Cornell University; Hencey, Brondon M. [Cornell University

    2013-08-26

    Building energy model reduction exchanges accuracy for improved simulation speed by reducing the number of dynamical equations. Parallel computing aims to improve simulation times without loss of accuracy but is poorly utilized by contemporary simulators and is inherently limited by inter-processor communication. This paper bridges these disparate techniques to implement efficient parallel building thermal simulation. We begin with a survey of three structured reduction approaches that compares their performance to a leading unstructured method. We then use structured model reduction to find thermal clusters in the building energy model and allocate processing resources. Experimental results demonstrate faster simulation and low error without any interprocessor communication.

  9. Parallel models of associative memory

    CERN Document Server

    Hinton, Geoffrey E

    2014-01-01

    This update of the 1981 classic on neural networks includes new commentaries by the authors that show how the original ideas are related to subsequent developments. As researchers continue to uncover ways of applying the complex information processing abilities of neural networks, they give these models an exciting future which may well involve revolutionary developments in understanding the brain and the mind -- developments that may allow researchers to build adaptive intelligent machines. The original chapters show where the ideas came from and the new commentaries show where they are going

  10. A CUDA based parallel multi-phase oil reservoir simulator

    Science.gov (United States)

    Zaza, Ayham; Awotunde, Abeeb A.; Fairag, Faisal A.; Al-Mouhamed, Mayez A.

    2016-09-01

    Forward Reservoir Simulation (FRS) is a challenging process that models fluid flow and mass transfer in porous media to draw conclusions about the behavior of certain flow variables and well responses. Besides the operational cost associated with matrix assembly, FRS repeatedly solves huge and computationally expensive sparse, ill-conditioned and unsymmetrical linear system. Moreover, as the computation for practical reservoir dimensions lasts for long times, speeding up the process by taking advantage of parallel platforms is indispensable. By considering the state of art advances in massively parallel computing and the accompanying parallel architecture, this work aims primarily at developing a CUDA-based parallel simulator for oil reservoir. In addition to the initial reported 33 times speed gain compared to the serial version, running experiments showed that BiCGSTAB is a stable and fast solver which could be incorporated in such simulations instead of the more expensive, storage demanding and usually utilized GMRES.

  11. Iteration schemes for parallelizing models of superconductivity

    Energy Technology Data Exchange (ETDEWEB)

    Gray, P.A. [Michigan State Univ., East Lansing, MI (United States)

    1996-12-31

    The time dependent Lawrence-Doniach model, valid for high fields and high values of the Ginzburg-Landau parameter, is often used for studying vortex dynamics in layered high-T{sub c} superconductors. When solving these equations numerically, the added degrees of complexity due to the coupling and nonlinearity of the model often warrant the use of high-performance computers for their solution. However, the interdependence between the layers can be manipulated so as to allow parallelization of the computations at an individual layer level. The reduced parallel tasks may then be solved independently using a heterogeneous cluster of networked workstations connected together with Parallel Virtual Machine (PVM) software. Here, this parallelization of the model is discussed and several computational implementations of varying degrees of parallelism are presented. Computational results are also given which contrast properties of convergence speed, stability, and consistency of these implementations. Included in these results are models involving the motion of vortices due to an applied current and pinning effects due to various material properties.

  12. Pwm Control Strategy For Controlling Of Parallel Rectifiers In Single Phase To Three Phase Drive System

    Directory of Open Access Journals (Sweden)

    Ramakrishna Manohar Anaparthi

    2014-12-01

    Full Text Available This paper explains that how to develop and design, control of single phase to three phase drive system. The proposed topology of drive system consisting of two parallel connected rectifiers, inverter and induction motor, connected through inductor and capacitor, where used to produce balanced output to the motor drive. The main objective of this proposed method is to reduce the circulating currents and harmonic distortions at the converter input side, here the control strategy of drive system is PWM (pulse width modulations techniques control strategy, the proposed topology also provides fault compensation in the case of short circuit faults and failure of switches for uninterrupted Power supplies. We also develop and simulate the MATLAB models for proposed drive system, by using MATLAB/ Simulink the output results simulate and observed.

  13. A Scalable Prescriptive Parallel Debugging Model

    DEFF Research Database (Denmark)

    Jensen, Nicklas Bo; Quarfot Nielsen, Niklas; Lee, Gregory L.

    2015-01-01

    Debugging is a critical step in the development of any parallel program. However, the traditional interactive debugging model, where users manually step through code and inspect their application, does not scale well even for current supercomputers due its centralized nature. While lightweight...

  14. Synthetic models of distributed memory parallel programs

    Energy Technology Data Exchange (ETDEWEB)

    Poplawski, D.A. (Michigan Technological Univ., Houghton, MI (USA). Dept. of Computer Science)

    1990-09-01

    This paper deals with the construction and use of simple synthetic programs that model the behavior of more complex, real parallel programs. Synthetic programs can be used in many ways: to construct an easily ported suite of benchmark programs, to experiment with alternate parallel implementations of a program without actually writing them, and to predict the behavior and performance of an algorithm on a new or hypothetical machine. Synthetic programs are constructed easily from scratch, from existing programs, and can even be constructed using nothing but information obtained from traces of the real program's execution.

  15. Phase dynamics of two parallel stacks of coupled Josephson junctions

    Science.gov (United States)

    Shukrinov, Yu M.; Rahmonov, I. R.; Plecenik, A.; Seidel, P.; Ilʼichev, E.; Nawrocki, W.

    2014-12-01

    Two parallel stacks of coupled Josephson junctions (JJs) are investigated to clarify the physics of transitions between the rotating and oscillating states and their effect on the IV-characteristics of the system. The detailed study of phase dynamics and bias dependence of the superconducting and diffusion currents allows one to explain all features of simulated IV-characteristics and demonstrate the correspondence in their behavior. The coupling between JJ in the stacks leads to the branching of IV-characteristics and a decrease in the hysteretic region. The crucial role of the diffusion current in the formation of the IV-characteristic of the parallel stacks of coupled JJs is demonstrated. We discuss the effect of symmetry in a number of junctions in the stacks and show a decrease of the branching in the symmetrical stacks. The observed effects might be useful for development of superconducting electronic devices based on intrinsic JJs.

  16. Parallel multiphase field simulations with OpenPhase

    Science.gov (United States)

    Tegeler, Marvin; Shchyglo, Oleg; Kamachali, Reza Darvishi; Monas, Alexander; Steinbach, Ingo; Sutmann, Godehard

    2017-06-01

    The open-source software project OpenPhase allows the three-dimensional simulation of microstructural evolution using the multiphase field method. The core modules of OpenPhase and their implementation as well as their parallelization for a distributed-memory setting are presented. Especially communication and load-balancing strategies are discussed. Synchronization points are avoided by an increased halo-size, i.e. additional layers of ghost cells, which allow multiple stencil operations without data exchange. Load-balancing is considered via graph-partitioning and sub-domain decomposition. Results are presented for performance benchmarks as well as for a variety of applications, e.g. grain growth in polycrystalline materials, including a large number of phase fields as well as Mg-Al alloy solidification.

  17. Electromagnetic Physics Models for Parallel Computing Architectures

    Science.gov (United States)

    Amadio, G.; Ananya, A.; Apostolakis, J.; Aurora, A.; Bandieramonte, M.; Bhattacharyya, A.; Bianchini, C.; Brun, R.; Canal, P.; Carminati, F.; Duhem, L.; Elvira, D.; Gheata, A.; Gheata, M.; Goulas, I.; Iope, R.; Jun, S. Y.; Lima, G.; Mohanty, A.; Nikitina, T.; Novak, M.; Pokorski, W.; Ribon, A.; Seghal, R.; Shadura, O.; Vallecorsa, S.; Wenzel, S.; Zhang, Y.

    2016-10-01

    The recent emergence of hardware architectures characterized by many-core or accelerated processors has opened new opportunities for concurrent programming models taking advantage of both SIMD and SIMT architectures. GeantV, a next generation detector simulation, has been designed to exploit both the vector capability of mainstream CPUs and multi-threading capabilities of coprocessors including NVidia GPUs and Intel Xeon Phi. The characteristics of these architectures are very different in terms of the vectorization depth and type of parallelization needed to achieve optimal performance. In this paper we describe implementation of electromagnetic physics models developed for parallel computing architectures as a part of the GeantV project. Results of preliminary performance evaluation and physics validation are presented as well.

  18. Dynamic stiffness model of spherical parallel robots

    Science.gov (United States)

    Cammarata, Alessandro; Caliò, Ivo; D`Urso, Domenico; Greco, Annalisa; Lacagnina, Michele; Fichera, Gabriele

    2016-12-01

    A novel approach to study the elastodynamics of Spherical Parallel Robots is described through an exact dynamic model. Timoshenko arches are used to simulate flexible curved links while the base and mobile platforms are modelled as rigid bodies. Spatial joints are inherently included into the model without Lagrangian multipliers. At first, the equivalent dynamic stiffness matrix of each leg, made up of curved links joined by spatial joints, is derived; then these matrices are assembled to obtain the Global Dynamic Stiffness Matrix of the robot at a given pose. Actuator stiffness is also included into the model to verify its influence on vibrations and modes. The latter are found by applying the Wittrick-Williams algorithm. Finally, numerical simulations and direct comparison to commercial FE results are used to validate the proposed model.

  19. Parallelization of the Coupled Earthquake Model

    Science.gov (United States)

    Block, Gary; Li, P. Peggy; Song, Yuhe T.

    2007-01-01

    This Web-based tsunami simulation system allows users to remotely run a model on JPL s supercomputers for a given undersea earthquake. At the time of this reporting, predicting tsunamis on the Internet has never happened before. This new code directly couples the earthquake model and the ocean model on parallel computers and improves simulation speed. Seismometers can only detect information from earthquakes; they cannot detect whether or not a tsunami may occur as a result of the earthquake. When earthquake-tsunami models are coupled with the improved computational speed of modern, high-performance computers and constrained by remotely sensed data, they are able to provide early warnings for those coastal regions at risk. The software is capable of testing NASA s satellite observations of tsunamis. It has been successfully tested for several historical tsunamis, has passed all alpha and beta testing, and is well documented for users.

  20. Parallel phase modulation scheme for interferometric gravitational-wave detectors.

    Science.gov (United States)

    Hartman, M T; Quetschke, V; Tanner, D B; Reitze, D H; Mueller, G

    2014-11-17

    Advanced LIGO (aLIGO) requires multiple frequency sidebands to disentangle all of the main interferometer's length signals. This paper presents the results of a risk reduction experiment to produce two sets of frequency sidebands in parallel, avoiding mixed 'sidebands on sidebands'. Two phase modulation frequencies are applied to separate Electro-Optic Modulators (EOMs), with one EOM in each of the two arms of a Mach-Zehnder interferometer. In this system the Mach-Zehnder's arm lengths are stabilized to reduce relative intensity noise in the recombined carrier beam by feeding a corrective control signal back to the Rubidium Titanyl Phosphate (RTP) EOM crystals to drive the optical path length difference to zero. This setup's use of the RTP crystals as length actuators provides enough bandwidth in the feedback to meet arm length stability requirements for aLIGO.

  1. Phase modulation parallel optical delay detector for microwave angle-of-arrival measurement with accuracy monitored

    CERN Document Server

    Cao, Z; Lu, R; Boom, H P A van den; Tangdiongga, E; Koonen, A M J

    2014-01-01

    A novel phase modulation parallel optical delay detector is proposed for microwave angle-of-arrival (AOA) measurement with accuracy monitored by using only one dual-electrode Mach-Zenhder modulator. A theoretical model is built up to analyze the proposed system including measurement accuracy monitoring. The spatial delay measurement is translated into the phase shift between two replicas of a microwave signal. Thanks to the accuracy monitoring, the phase shifts from 5{\\deg} to 165{\\deg} are measured with less than 3.1{\\deg} measurement error.

  2. A Network Model for Parallel Line Balancing Problem

    OpenAIRE

    Recep Benzer; Hadi Gökçen; Tahsin Çetinyokus; Hakan Çerçioglu

    2007-01-01

    Gökçen et al. (2006) have proposed several procedures and a mathematical model on single-model (product) assembly line balancing (ALB) problem with parallel lines. In parallel ALB problem, the goal is to balance more than one assembly line together. In this paper, a network model for parallel ALB problem has been proposed and illustrated on a numerical example. This model is a new approach for parallel ALB and it provides a different point of view for i...

  3. Unified Singularity Modeling and Reconfiguration of 3rTPS Metamorphic Parallel Mechanisms with Parallel Constraint Screws

    Directory of Open Access Journals (Sweden)

    Yufeng Zhuang

    2015-01-01

    Full Text Available This paper presents a unified singularity modeling and reconfiguration analysis of variable topologies of a class of metamorphic parallel mechanisms with parallel constraint screws. The new parallel mechanisms consist of three reconfigurable rTPS limbs that have two working phases stemming from the reconfigurable Hooke (rT joint. While one phase has full mobility, the other supplies a constraint force to the platform. Based on these, the platform constraint screw systems show that the new metamorphic parallel mechanisms have four topologies by altering the limb phases with mobility change among 1R2T (one rotation with two translations, 2R2T, and 3R2T and mobility 6. Geometric conditions of the mechanism design are investigated with some special topologies illustrated considering the limb arrangement. Following this and the actuation scheme analysis, a unified Jacobian matrix is formed using screw theory to include the change between geometric constraints and actuation constraints in the topology reconfiguration. Various singular configurations are identified by analyzing screw dependency in the Jacobian matrix. The work in this paper provides basis for singularity-free workspace analysis and optimal design of the class of metamorphic parallel mechanisms with parallel constraint screws which shows simple geometric constraints with potential simple kinematics and dynamics properties.

  4. Fast phase processing in off-axis holography by CUDA including parallel phase unwrapping.

    Science.gov (United States)

    Backoach, Ohad; Kariv, Saar; Girshovitz, Pinhas; Shaked, Natan T

    2016-02-22

    We present parallel processing implementation for rapid extraction of the quantitative phase maps from off-axis holograms on the Graphics Processing Unit (GPU) of the computer using computer unified device architecture (CUDA) programming. To obtain efficient implementation, we parallelized both the wrapped phase map extraction algorithm and the two-dimensional phase unwrapping algorithm. In contrast to previous implementations, we utilized unweighted least squares phase unwrapping algorithm that better suits parallelism. We compared the proposed algorithm run times on the CPU and the GPU of the computer for various sizes of off-axis holograms. Using the GPU implementation, we extracted the unwrapped phase maps from the recorded off-axis holograms at 35 frames per second (fps) for 4 mega pixel holograms, and at 129 fps for 1 mega pixel holograms, which presents the fastest processing framerates obtained so far, to the best of our knowledge. We then used common-path off-axis interferometric imaging to quantitatively capture the phase maps of a micro-organism with rapid flagellum movements.

  5. Parallel Adaptive Simulation for the Phase Field Model of Red Blood Cell Conifguration Based on MPI+OpenMP%红细胞形态的MPI+OpenMP并行自适应相场模拟

    Institute of Scientific and Technical Information of China (English)

    刘旸; 张鉴; 陆忠华

    2014-01-01

    In this paper, a parallel adaptive algorithm for the phase ifeld model of red blood cell conifguration is presented. We designed a grid reifnement method and coarsening criteria based on the surface capturing principle, and adopted an adaptive time step size scheme based on discrete energy . In addition, we designed and realized MPI+OpenMP parallel algorithm based on a block-structured adaptive mesh managing software package PARAMESH. The correctness of the adaptive algorithm and the efifciency of the MPI+OpenMP hybrid parallel realization were demonstrated through experiments. The test results indicated good scalability of the algorithm.%本文针对红细胞形态的相场模型研究并行自适应算法。我们依据界面追踪的原则设计了自适应网格的更新准则,并基于离散能量下降准则设计了时间步长的自适应算法。在基于MPI的块结构自适应网格管理软件包PARAMESH的基础上设计并实现了MPI+OpenMP的混合并行算法。通过红细胞稳定态的自适应计算验证了自适应算法的正确性并测试了混合并行实现的效率。测试结果显示混合并行算法具有良好的可扩展性。

  6. Parallel phase-sensitive three-dimensional imaging camera

    Science.gov (United States)

    Smithpeter, Colin L.; Hoover, Eddie R.; Pain, Bedabrata; Hancock, Bruce R.; Nellums, Robert O.

    2007-09-25

    An apparatus is disclosed for generating a three-dimensional (3-D) image of a scene illuminated by a pulsed light source (e.g. a laser or light-emitting diode). The apparatus, referred to as a phase-sensitive 3-D imaging camera utilizes a two-dimensional (2-D) array of photodetectors to receive light that is reflected or scattered from the scene and processes an electrical output signal from each photodetector in the 2-D array in parallel using multiple modulators, each having inputs of the photodetector output signal and a reference signal, with the reference signal provided to each modulator having a different phase delay. The output from each modulator is provided to a computational unit which can be used to generate intensity and range information for use in generating a 3-D image of the scene. The 3-D camera is capable of generating a 3-D image using a single pulse of light, or alternately can be used to generate subsequent 3-D images with each additional pulse of light.

  7. Parallel computing in atmospheric chemistry models

    Energy Technology Data Exchange (ETDEWEB)

    Rotman, D. [Lawrence Livermore National Lab., CA (United States). Atmospheric Sciences Div.

    1996-02-01

    Studies of atmospheric chemistry are of high scientific interest, involve computations that are complex and intense, and require enormous amounts of I/O. Current supercomputer computational capabilities are limiting the studies of stratospheric and tropospheric chemistry and will certainly not be able to handle the upcoming coupled chemistry/climate models. To enable such calculations, the authors have developed a computing framework that allows computations on a wide range of computational platforms, including massively parallel machines. Because of the fast paced changes in this field, the modeling framework and scientific modules have been developed to be highly portable and efficient. Here, the authors present the important features of the framework and focus on the atmospheric chemistry module, named IMPACT, and its capabilities. Applications of IMPACT to aircraft studies will be presented.

  8. A Parallel, High-Fidelity Radar Model

    Science.gov (United States)

    Horsley, M.; Fasenfest, B.

    2010-09-01

    Accurate modeling of Space Surveillance sensors is necessary for a variety of applications. Accurate models can be used to perform trade studies on sensor designs, locations, and scheduling. In addition, they can be used to predict system-level performance of the Space Surveillance Network to a collision or satellite break-up event. A high fidelity physics-based radar simulator has been developed for Space Surveillance applications. This simulator is designed in a modular fashion, where each module describes a particular physical process or radar function (radio wave propagation & scattering, waveform generation, noise sources, etc.) involved in simulating the radar and its environment. For each of these modules, multiple versions are available in order to meet the end-users needs and requirements. For instance, the radar simulator supports different atmospheric models in order to facilitate different methods of simulating refraction of the radar beam. The radar model also has the capability to use highly accurate radar cross sections generated by the method of moments, accelerated by the fast multipole method. To accelerate this computationally expensive model, it is parallelized using MPI. As a testing framework for the radar model, it is incorporated into the Testbed Environment for Space Situational Awareness (TESSA). TESSA is based on a flexible, scalable architecture, designed to exploit high-performance computing resources and allow physics-based simulation of the SSA enterprise. In addition to the radar models, TESSA includes hydrodynamic models of satellite intercept and debris generation, orbital propagation algorithms, optical brightness calculations, optical system models, object detection algorithms, orbit determination algorithms, simulation analysis and visualization tools. Within this framework, observations and tracks generated by the new radar model are compared to results from a phenomenological radar model. In particular, the new model will be

  9. A Parallel Lattice Boltzmann Model of a Carotid Artery

    Science.gov (United States)

    Boyd, J.; Ryan, S. J.; Buick, J. M.

    2008-11-01

    A parallel implementation of the lattice Boltzmann model is considered for a three dimensional model of the carotid artery. The computational method and its parallel implementation are described. The performance of the parallel implementation on a Beowulf cluster is presented, as are preliminary hemodynamic results.

  10. Hierarchical Bulk Synchronous Parallel Model and Performance Optimization

    Institute of Scientific and Technical Information of China (English)

    HUANG Linpeng; SUNYongqiang; YUAN Wei

    1999-01-01

    Based on the framework of BSP, aHierarchical Bulk Synchronous Parallel (HBSP) performance model isintroduced in this paper to capture the performance optimizationproblem for various stages in parallel program development and toaccurately predict the performance of a parallel program byconsidering factors causing variance at local computation and globalcommunication. The related methodology has been applied to several realapplications and the results show that HBSP is a suitable model foroptimizing parallel programs.

  11. Hybrid fluid/kinetic model for parallel heat conduction

    Energy Technology Data Exchange (ETDEWEB)

    Callen, J.D.; Hegna, C.C.; Held, E.D. [Univ. of Wisconsin, Madison, WI (United States)

    1998-12-31

    It is argued that in order to use fluid-like equations to model low frequency ({omega} < {nu}) phenomena such as neoclassical tearing modes in low collisionality ({nu} < {omega}{sub b}) tokamak plasmas, a Chapman-Enskog-like approach is most appropriate for developing an equation for the kinetic distortion (F) of the distribution function whose velocity-space moments lead to the needed fluid moment closure relations. Further, parallel heat conduction in a long collision mean free path regime can be described through a combination of a reduced phase space Chapman-Enskog-like approach for the kinetics and a multiple-time-scale analysis for the fluid and kinetic equations.

  12. Exploitation of Parallelism in Climate Models

    Energy Technology Data Exchange (ETDEWEB)

    Baer, F.; Tribbia, J.J.; Williamson, D.L.

    1999-03-01

    The US Department of Energy (DOE), through its CHAMMP initiative, hopes to develop the capability to make meaningful regional climate forecasts on time scales exceeding a decade, such capability to be based on numerical prediction type models. We propose research to contribute to each of the specific items enumerated in the CHAMMP announcement (Notice 91-3); i.e., to consider theoretical limits to prediction of climate and climate change on appropriate time scales, to develop new mathematical techniques to utilize massively parallel processors (MPP), to actually utilize MPPs as a research tool, and to develop improved representations of some processes essential to climate prediction. In particular, our goals are to: (1) Reconfigure the prediction equations such that the time iteration process can be compressed by use of MMP architecture, and to develop appropriate algorithms. (2) Develop local subgrid scale models which can provide time and space dependent parameterization for a state- of-the-art climate model to minimize the scale resolution necessary for a climate model, and to utilize MPP capability to simultaneously integrate those subgrid models and their statistics. (3) Capitalize on the MPP architecture to study the inherent ensemble nature of the climate problem. By careful choice of initial states, many realizations of the climate system can be determined concurrently and more realistic assessments of the climate prediction can be made in a realistic time frame. To explore these initiatives, we will exploit all available computing technology, and in particular MPP machines. We anticipate that significant improvements in modeling of climate on the decadal and longer time scales for regional space scales will result from our efforts.

  13. Shared Variable Oriented Parallel Precompiler for SPMD Model

    Institute of Scientific and Technical Information of China (English)

    1995-01-01

    For the moment,commercial parallel computer systems with distributed memory architecture are usually provided with parallel FORTRAN or parallel C compliers,which are just traditional sequential FORTRAN or C compilers expanded with communication statements.Programmers suffer from writing parallel programs with communication statements. The Shared Variable Oriented Parallel Precompiler (SVOPP) proposed in this paper can automatically generate appropriate communication statements based on shared variables for SPMD(Single Program Multiple Data) computation model and greatly ease the parallel programming with high communication efficiency.The core function of parallel C precompiler has been successfully verified on a transputer-based parallel computer.Its prominent performance shows that SVOPP is probably a break-through in parallel programming technique.

  14. DYNAMIC TASK PARTITIONING MODEL IN PARALLEL COMPUTING

    Directory of Open Access Journals (Sweden)

    Javed Ali

    2012-04-01

    Full Text Available Parallel computing systems compose task partitioning strategies in a true multiprocessing manner. Such systems share the algorithm and processing unit as computing resources which leads to highly inter process communications capabilities. The main part of the proposed algorithm is resource management unit which performs task partitioning and co-scheduling .In this paper, we present a technique for integrated task partitioning and co-scheduling on the privately owned network. We focus on real-time and non preemptive systems. A large variety of experiments have been conducted on the proposed algorithm using synthetic and real tasks. Goal of computation model is to provide a realistic representation of the costs of programming The results show the benefit of the task partitioning. The main characteristics of our method are optimal scheduling and strong link between partitioning, scheduling and communication. Some important models for task partitioning are also discussed in the paper. We target the algorithm for task partitioning which improve the inter process communication between the tasks and use the recourses of the system in the efficient manner. The proposed algorithm contributes the inter-process communication cost minimization amongst the executing processes.

  15. The Modeling of the ERP Systems within Parallel Calculus

    Directory of Open Access Journals (Sweden)

    Loredana MOCEAN

    2011-01-01

    Full Text Available As we know from a few years, the basic characteristics of ERP systems are: modular-design, central common database, integration of the modules, data transfer between modules done automatically, complex systems and flexible configuration. Because this, is obviously a parallel approach to design and implement them within parallel algorithms, parallel calculus and distributed databases. This paper aims to support these assertions and provide a model, in summary, what could be an ERP system based on parallel computing and algorithms.

  16. A Network Model for Parallel Line Balancing Problem

    Directory of Open Access Journals (Sweden)

    Recep Benzer

    2007-01-01

    Full Text Available Gökçen et al. (2006 have proposed several procedures and a mathematical model on single-model (product assembly line balancing (ALB problem with parallel lines. In parallel ALB problem, the goal is to balance more than one assembly line together. In this paper, a network model for parallel ALB problem has been proposed and illustrated on a numerical example. This model is a new approach for parallel ALB and it provides a different point of view for interested researchers.

  17. Harmony Theory: Problem Solving, Parallel Cognitive Models, and Thermal Physics.

    Science.gov (United States)

    Smolensky, Paul; Riley, Mary S.

    This document consists of three papers. The first, "A Parallel Model of (Sequential) Problem Solving," describes a parallel model designed to solve a class of relatively simple problems from elementary physics and discusses implications for models of problem-solving in general. It is shown that one of the most salient features of problem…

  18. Parallel implementation of approximate atomistic models of the AMOEBA polarizable model

    Science.gov (United States)

    Demerdash, Omar; Head-Gordon, Teresa

    2016-11-01

    In this work we present a replicated data hybrid OpenMP/MPI implementation of a hierarchical progression of approximate classical polarizable models that yields speedups of up to ∼10 compared to the standard OpenMP implementation of the exact parent AMOEBA polarizable model. In addition, our parallel implementation exhibits reasonable weak and strong scaling. The resulting parallel software will prove useful for those who are interested in how molecular properties converge in the condensed phase with respect to the MBE, it provides a fruitful test bed for exploring different electrostatic embedding schemes, and offers an interesting possibility for future exascale computing paradigms.

  19. PDDP: A data parallel programming model. Revision 1

    Energy Technology Data Exchange (ETDEWEB)

    Warren, K.H.

    1995-06-01

    PDDP, the Parallel Data Distribution Preprocessor, is a data parallel programming model for distributed memory parallel computers. PDDP impelments High Performance Fortran compatible data distribution directives and parallelism expressed by the use of Fortran 90 array syntax, the FORALL statement, and the (WRERE?) construct. Distribued data objects belong to a global name space; other data objects are treated as local and replicated on each processor. PDDP allows the user to program in a shared-memory style and generates codes that are portable to a variety of parallel machines. For interprocessor communication, PDDP uses the fastest communication primitives on each platform.

  20. Mathematical model partitioning and packing for parallel computer calculation

    Science.gov (United States)

    Arpasi, Dale J.; Milner, Edward J.

    1986-01-01

    This paper deals with the development of multiprocessor simulations from a serial set of ordinary differential equations describing a physical system. The identification of computational parallelism within the model equations is discussed. A technique is presented for identifying this parallelism and for partitioning the equations for parallel solution on a multiprocessor. Next, an algorithm which packs the equations into a minimum number of processors is described. The results of applying the packing algorithm to a turboshaft engine model are presented.

  1. A model for dealing with parallel processes in supervision

    Directory of Open Access Journals (Sweden)

    Lilja Cajvert

    2011-03-01

    Supervision in social work is essential for successful outcomes when working with clients. In social work, unconscious difficulties may arise and similar difficulties may occur in supervision as parallel processes. In this article, the development of a practice-based model of supervision to deal with parallel processes in supervision is described. The model has six phases. In the first phase, the focus is on the supervisor’s inner world, his/her own reflections and observations. In the second phase, the supervision situation is “frozen”, and the supervisees are invited to join the supervisor in taking a meta-perspective on the current situation of supervision. The focus in the third phase is on the inner world of all the group members as well as the visualization and identification of reflections and feelings that arose during the supervision process. Phase four focuses on the supervisee who presented a case, and in phase five the focus shifts to the common understanding and theorization of the supervision process as well as the definition and identification of possible parallel processes. In the final phase, the supervisee, with the assistance of the supervisor and other members of the group, develops a solution and determines how to proceed with the client in treatment. This article uses phenomenological concepts to provide a theoretical framework for the supervision model. Phenomenological reduction is an important approach to examine and to externalize and visualize the inner words of the supervisor and supervisees. Een model voor het hanteren van parallelle processen tijdens supervisie Om succesvol te zijn in de hulpverlening aan cliënten, is supervisie cruciaal in het sociaal werk. Tijdens de hulpverlening kunnen impliciete moeilijkheden de kop opsteken en soortgelijke moeilijkheden duiken soms ook op tijdens supervisie. Dit worden parallelle processen genoemd. Dit artikel beschrijft een op praktijkervaringen gebaseerd model om dergelijke parallelle

  2. Parallel power electronics filters in three-phase four-wire systems principle, control and design

    CERN Document Server

    Wong, Man-Chung; Lam, Chi-Seng

    2016-01-01

    This book describes parallel power electronic filters for 3-phase 4-wire systems, focusing on the control, design and system operation. It presents the basics of power-electronics techniques applied in power systems as well as the advanced techniques in controlling, implementing and designing parallel power electronics converters. The power-quality compensation has been achieved using active filters and hybrid filters, and circuit models, control principles and operational practice problems have been verified by principle study, simulation and experimental results. The state-of-the-art research findings were mainly developed by a team at the University of Macau. Offering background information and related novel techniques, this book is a valuable resource for electrical engineers and researchers wanting to work on energy saving using power-quality compensators or renewable energy power electronics systems. .

  3. Modeling groundwater flow on massively parallel computers

    Energy Technology Data Exchange (ETDEWEB)

    Ashby, S.F.; Falgout, R.D.; Fogwell, T.W.; Tompson, A.F.B.

    1994-12-31

    The authors will explore the numerical simulation of groundwater flow in three-dimensional heterogeneous porous media. An interdisciplinary team of mathematicians, computer scientists, hydrologists, and environmental engineers is developing a sophisticated simulation code for use on workstation clusters and MPPs. To date, they have concentrated on modeling flow in the saturated zone (single phase), which requires the solution of a large linear system. they will discuss their implementation of preconditioned conjugate gradient solvers. The preconditioners under consideration include simple diagonal scaling, s-step Jacobi, adaptive Chebyshev polynomial preconditioning, and multigrid. They will present some preliminary numerical results, including simulations of groundwater flow at the LLNL site. They also will demonstrate the code`s scalability.

  4. Graph Partitioning Models for Parallel Computing

    Energy Technology Data Exchange (ETDEWEB)

    Hendrickson, B.; Kolda, T.G.

    1999-03-02

    Calculations can naturally be described as graphs in which vertices represent computation and edges reflect data dependencies. By partitioning the vertices of a graph, the calculation can be divided among processors of a parallel computer. However, the standard methodology for graph partitioning minimizes the wrong metric and lacks expressibility. We survey several recently proposed alternatives and discuss their relative merits.

  5. Simultaneous estimation of phase derivative and phase using parallel Kalman filter implementation

    Science.gov (United States)

    Kulkarni, Rishikesh; Rastogi, Pramod

    2016-06-01

    This paper proposes a technique for the simultaneous estimation of interference phase derivative and phase from a complex interferogram recorded in an optical interferometric setup. The complex interferogram is represented as a spatially varying autoregressive process in a given row or column at a time. The phase derivative is estimated from the poles of the transfer function representation of the autoregressive process. The poles are computed using the spatially varying autoregressive coefficients which are estimated by a computationally efficient Rauch-Tung-Striebel smoothing algorithm. The estimated phase derivative is used as a control input to a state space model designed for the phase estimation at each pixel. The unscented Kalman filter is utilized to deal with the nonlinear measurement process for the accurate estimation of the unwrapped phase. Numerical and experimental results substantiate the ability of the proposed method in handling noisy phase fringe patterns.

  6. Parallelism and optimization of numerical ocean forecasting model

    Science.gov (United States)

    Xu, Jianliang; Pang, Renbo; Teng, Junhua; Liang, Hongtao; Yang, Dandan

    2016-10-01

    According to the characteristics of Chinese marginal seas, the Marginal Sea Model of China (MSMC) has been developed independently in China. Because the model requires long simulation time, as a routine forecasting model, the parallelism of MSMC becomes necessary to be introduced to improve the performance of it. However, some methods used in MSMC, such as Successive Over Relaxation (SOR) algorithm, are not suitable for parallelism. In this paper, methods are developedto solve the parallel problem of the SOR algorithm following the steps as below. First, based on a 3D computing grid system, an automatic data partition method is implemented to dynamically divide the computing grid according to computing resources. Next, based on the characteristics of the numerical forecasting model, a parallel method is designed to solve the parallel problem of the SOR algorithm. Lastly, a communication optimization method is provided to avoid the cost of communication. In the communication optimization method, the non-blocking communication of Message Passing Interface (MPI) is used to implement the parallelism of MSMC with complex physical equations, and the process of communication is overlapped with the computations for improving the performance of parallel MSMC. The experiments show that the parallel MSMC runs 97.2 times faster than the serial MSMC, and root mean square error between the parallel MSMC and the serial MSMC is less than 0.01 for a 30-day simulation (172800 time steps), which meets the requirements of timeliness and accuracy for numerical ocean forecasting products.

  7. Deterministic Consistency: A Programming Model for Shared Memory Parallelism

    OpenAIRE

    Aviram, Amittai; Ford, Bryan

    2009-01-01

    The difficulty of developing reliable parallel software is generating interest in deterministic environments, where a given program and input can yield only one possible result. Languages or type systems can enforce determinism in new code, and runtime systems can impose synthetic schedules on legacy parallel code. To parallelize existing serial code, however, we would like a programming model that is naturally deterministic without language restrictions or artificial scheduling. We propose "...

  8. Parallel Evolutionary Modeling for Nonlinear Ordinary Differential Equations

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    We introduce a new parallel evolutionary algorithm in modeling dynamic systems by nonlinear higher-order ordinary differential equations (NHODEs). The NHODEs models are much more universal than the traditional linear models. In order to accelerate the modeling process, we propose and realize a parallel evolutionary algorithm using distributed CORBA object on the heterogeneous networking. Some numerical experiments show that the new algorithm is feasible and efficient.

  9. An Integrated Inductor For Parallel Interleaved Three-Phase Voltage Source Converters

    DEFF Research Database (Denmark)

    Gohil, Ghanshyamsinh Vijaysinh; Bede, Lorand; Teodorescu, Remus;

    2016-01-01

    Three phase Voltage Source Converters (VSCs) are often connected in parallel to realize high current output converter system. The harmonic quality of the resultant switched output voltage can be improved by interleaving the carrier signals of these parallel connected VSCs. As a result, the line...

  10. Development of a Massively Parallel NOGAPS Forecast Model

    Science.gov (United States)

    2016-06-07

    parallel computer architectures. These algorithms will be critical for inter- processor communication dependent and computationally intensive model...to exploit massively parallel processor (MPP), distributed memory computer architectures. Future increases in computer power from MPP’s will allow...passing (MPI) is the paradigm chosen for communication between distributed memory processors. APPROACH Use integrations of the current operational

  11. Modeling of liquid phases

    CERN Document Server

    Soustelle, Michel

    2015-01-01

    This book is part of a set of books which offers advanced students successive characterization tool phases, the study of all types of phase (liquid, gas and solid, pure or multi-component), process engineering, chemical and electrochemical equilibria, and the properties of surfaces and phases of small sizes. Macroscopic and microscopic models are in turn covered with a constant correlation between the two scales. Particular attention has been given to the rigor of mathematical developments. This second volume in the set is devoted to the study of liquid phases.

  12. Massively Parallel Phase-Field Simulations for Ternary Eutectic Directional Solidification

    CERN Document Server

    Bauer, Martin; Steinmetz, Philipp; Jainta, Marcus; Berghoff, Marco; Schornbaum, Florian; Godenschwager, Christian; Köstler, Harald; Nestler, Britta; Rüde, Ulrich

    2015-01-01

    Microstructures forming during ternary eutectic directional solidification processes have significant influence on the macroscopic mechanical properties of metal alloys. For a realistic simulation, we use the well established thermodynamically consistent phase-field method and improve it with a new grand potential formulation to couple the concentration evolution. This extension is very compute intensive due to a temperature dependent diffusive concentration. We significantly extend previous simulations that have used simpler phase-field models or were performed on smaller domain sizes. The new method has been implemented within the massively parallel HPC framework waLBerla that is designed to exploit current supercomputers efficiently. We apply various optimization techniques, including buffering techniques, explicit SIMD kernel vectorization, and communication hiding. Simulations utilizing up to 262,144 cores have been run on three different supercomputing architectures and weak scalability results are show...

  13. Low phase noise oscillator using two parallel connected amplifiers

    Science.gov (United States)

    Kleinberg, Leonard L.

    1987-01-01

    A high frequency oscillator is provided by connecting two amplifier circuits in parallel where each amplifier circuit provides the other amplifier circuit with the conditions necessary for oscillation. The inherent noise present in both amplifier circuits causes the quiescent current, and in turn, the generated frequency, to change. The changes in quiescent current cause the transconductance and the load impedance of each amplifier circuit to vary, and this in turn results in opposing changes in the input susceptance of each amplifier circuit. Because the changes in input susceptance oppose each other, the changes in quiescent current also oppose each other. The net result is that frequency stability is enhanced.

  14. Positive phase error from parallel conductance in tetrapolar bio-impedance measurements and its compensation

    Directory of Open Access Journals (Sweden)

    Ivan M Roitt

    2010-01-01

    Full Text Available Bioimpedance measurements are of great use and can provide considerable insight into biological processes.  However, there are a number of possible sources of measurement error that must be considered.  The most dominant source of error is found in bipolar measurements where electrode polarisation effects are superimposed on the true impedance of the sample.  Even with the tetrapolar approach that is commonly used to circumvent this issue, other errors can persist. Here we characterise the positive phase and rise in impedance magnitude with frequency that can result from the presence of any parallel conductive pathways in the measurement set-up.  It is shown that fitting experimental data to an equivalent electrical circuit model allows for accurate determination of the true sample impedance as validated through finite element modelling (FEM of the measurement chamber.  Finally, the model is used to extract dispersion information from cell cultures to characterise their growth.

  15. Requirements and Problems in Parallel Model Development at DWD

    Directory of Open Access Journals (Sweden)

    Ulrich Schäattler

    2000-01-01

    Full Text Available Nearly 30 years after introducing the first computer model for weather forecasting, the Deutscher Wetterdienst (DWD is developing the 4th generation of its numerical weather prediction (NWP system. It consists of a global grid point model (GME based on a triangular grid and a non-hydrostatic Lokal Modell (LM. The operational demand for running this new system is immense and can only be met by parallel computers. From the experience gained in developing earlier NWP models, several new problems had to be taken into account during the design phase of the system. Most important were portability (including efficieny of the programs on several computer architectures and ease of code maintainability. Also the organization and administration of the work done by developers from different teams and institutions is more complex than it used to be. This paper describes the models and gives some performance results. The modular approach used for the design of the LM is explained and the effects on the development are discussed.

  16. Modeling and Adaptive Control of a Planar Parallel Mechanism

    Institute of Scientific and Technical Information of China (English)

    敖银辉; 陈新

    2004-01-01

    Dynamic model and control strategy of parallel mechanism have always been a problem in robotics research. In this paper,different dynamics formulation methods are discussed first, A model of redundant driven parallel mechanism with a planar parallel manipulator is then constructed as an example. A nonlinear adaptive control method is introduced. Matrix pseudo-inversion is used to get a desired actuator torque from a desired end-effector coordinate while the feedback torque is directly calculated in the actuator space. This treatment avoids forward kinematics computation that is very difficult in a parallel mechanism. Experiments with PID together with the descibed adaptive control strategy were carried out for a planar parallel mechanism. The results show that the proposed adaptive controller outperforms conventional PID methods in tracking desired input at a high speed,

  17. Parallel community climate model: Description and user`s guide

    Energy Technology Data Exchange (ETDEWEB)

    Drake, J.B.; Flanery, R.E.; Semeraro, B.D.; Worley, P.H. [and others

    1996-07-15

    This report gives an overview of a parallel version of the NCAR Community Climate Model, CCM2, implemented for MIMD massively parallel computers using a message-passing programming paradigm. The parallel implementation was developed on an Intel iPSC/860 with 128 processors and on the Intel Delta with 512 processors, and the initial target platform for the production version of the code is the Intel Paragon with 2048 processors. Because the implementation uses a standard, portable message-passing libraries, the code has been easily ported to other multiprocessors supporting a message-passing programming paradigm. The parallelization strategy used is to decompose the problem domain into geographical patches and assign each processor the computation associated with a distinct subset of the patches. With this decomposition, the physics calculations involve only grid points and data local to a processor and are performed in parallel. Using parallel algorithms developed for the semi-Lagrangian transport, the fast Fourier transform and the Legendre transform, both physics and dynamics are computed in parallel with minimal data movement and modest change to the original CCM2 source code. Sequential or parallel history tapes are written and input files (in history tape format) are read sequentially by the parallel code to promote compatibility with production use of the model on other computer systems. A validation exercise has been performed with the parallel code and is detailed along with some performance numbers on the Intel Paragon and the IBM SP2. A discussion of reproducibility of results is included. A user`s guide for the PCCM2 version 2.1 on the various parallel machines completes the report. Procedures for compilation, setup and execution are given. A discussion of code internals is included for those who may wish to modify and use the program in their own research.

  18. Numerical investigation of the mechanism of two-phase flow instability in parallel narrow channels

    Energy Technology Data Exchange (ETDEWEB)

    Hu, Lian [Key Laboratory of Low-grade Energy Utilization Technologies and Systems, Chongqing University (China); Chen, Deqi, E-mail: chendeqi@cqu.edu.cn [Key Laboratory of Low-grade Energy Utilization Technologies and Systems, Chongqing University (China); CNNC Key Laboratory on Nuclear Reactor Thermal Hydraulics Technology, Nuclear Power Institute of China, Chengdu 610041 (China); Huang, Yanping, E-mail: hyanping007@163.com [CNNC Key Laboratory on Nuclear Reactor Thermal Hydraulics Technology, Nuclear Power Institute of China, Chengdu 610041 (China); Yuan, Dewen; Wang, Yanling [CNNC Key Laboratory on Nuclear Reactor Thermal Hydraulics Technology, Nuclear Power Institute of China, Chengdu 610041 (China); Pan, Liangming [Key Laboratory of Low-grade Energy Utilization Technologies and Systems, Chongqing University (China)

    2015-06-15

    Highlights: • A mathematical model is proposed to predict the two-phase flow instability. • The mathematical model predicted result agrees well with the experimental result. • Oscillation characteristics of the two-phase flow instability is discussed in detail. - Abstract: In this paper, the mechanism of two-phase flow instability in parallel narrow channels is studied theoretically, and the characteristic of the flow instability is discussed in detail. Due to the significant confining effect of the narrow channel on the vapor–liquid interface, the two-phase flow resistance in the narrow channel is probably different from that in conventional channel. Therefore, the vapor confined number (N{sub conf}), defined by the size of narrow channel and bubble detachment diameter, is considered in the “Chisholm B model” to investigate the two-phase flow pressure drop. The flow instability boundaries are plotted in parameter plane with phase-change-number (N{sub pch}) and subcooling-number (N{sub sub}) under different working conditions. It is found that the predicted result agrees well with the experimental result. According to the predicted result, the oscillation behaviors near the flow instability boundary indicate that the Supercritical Hopf bifurcation appears in high sub-cooled region and the Subcritical Hopf bifurcation appears in low sub-cooled region. Also, a detailed analysis about the effects of key parameters on the characteristic of two-phase flow instability and the flow instability boundary is proposed, including the effects of inlet subcooling, heating power, void distribution parameter and drift velocity.

  19. Parallelization of the NASA Goddard Cumulus Ensemble Model for Massively Parallel Computing

    Directory of Open Access Journals (Sweden)

    Hann-Ming Henry Juang

    2007-01-01

    Full Text Available Massively parallel computing, using a message passing interface (MPI, has been implemented into a three-dimensional version of the Goddard Cumulus Ensemble (GCE model. The implementation uses the domainresemble concept to design a code structure for both the whole domain and sub-domains after decomposition. Instead of inserting a group of MPI related statements into the model routine, these statements are packed into a single routine. In other words, only a single call statement to the model code is utilized once in a place, thus there is minimal impact on the original code. Therefore, the model is easily modified and/or managed by the model developers and/or users, who have little knowledge of massively parallel computing.

  20. Dynamic Distribution Model with Prime Granularity for Parallel Computing

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    Dynamic distribution model is one of the best schemes for parallel volume rendering. However, in homogeneous cluster system, since the granularity is traditionally identical, all processors communicate almost simultaneously and computation load may lose balance. Due to problems above, a dynamic distribution model with prime granularity for parallel computing is presented.Granularities of each processor are relatively prime, and related theories are introduced. A high parallel performance can be achieved by minimizing network competition and using a load balancing strategy that ensures all processors finish almost simultaneously. Based on Master-Slave-Gleaner (MSG) scheme, the parallel Splatting Algorithm for volume rendering is used to test the model on IBM Cluster 1350 system. The experimental results show that the model can bring a considerable improvement in performance, including computation efficiency, total execution time, speed, and load balancing.

  1. The research of parallel-coupled linear-phase superconducting filter

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Tianliang; Zhou, Liguo; Yang, Kai, E-mail: kyang@uestc.edu.cn; Luo, Chao; Jiang, Mingyan; Dang, Wei; Ren, Xiangyang

    2015-12-15

    Highlights: • Parallel-connected linear phase filter can be achieved when the group delays of sub-networks compensate each other. • We give the coupling and routing diagrams of four linear phase filters with self-synthesized coupling matrixes, and verified the correctness of theory data and the feasibility of the circuit design. • There are a variety of topological coupling and routing diagrams for a same order filter. • We give a reasonable arrangement of design steps for high-order parallel-coupled linear phase filter. - Abstract: This paper presents a research on the mechanism of a linear phase filter constructed with parallel-connected sub-networks, considering that linear phase characteristic of a filter can be achieved when the group delays of sub-networks compensate each other. This paper also gives several coupling and routing diagrams of linear phase filters with different parallel-connected networks, and then the coupling matrixes of three 8-order filters and one 10-order filter are synthesized. One of the coupling matrixes is utilized to design a 8-order parallel-connected network high temperature superconducting (HTS) linear phase filter with two pairs of transmission zeros, so as to verify the correctness of theory data and the feasibility of the circuit design for the proposed 8-order and higher order parallel-connected network linear phase filter. The HTS linear phase filter is designed on YBCO/LaAlO{sub 3}/YBCO superconducting substrate, at 77 K, the measured center frequency is 2000 MHz with a bandwidth of 30 MHz, the insertion loss is less than 0.3 dB and the reflection is better than −12.5 dB in passband. The group delay is less than ±5 ns over the 60% passband, which shows that the filter has a good linear phase characteristic.

  2. Models of parallel computation :a survey and classification

    Institute of Scientific and Technical Information of China (English)

    ZHANG Yunquan; CHEN Guoliang; SUN Guangzhong; MIAO Qiankun

    2007-01-01

    In this paper,the state-of-the-art parallel computational model research is reviewed.We will introduce various models that were developed during the past decades.According to their targeting architecture features,especially memory organization,we classify these parallel computational models into three generations.These models and their characteristics are discussed based on three generations classification.We believe that with the ever increasing speed gap between the CPU and memory systems,incorporating non-uniform memory hierarchy into computational models will become unavoidable.With the emergence of multi-core CPUs,the parallelism hierarchy of current computing platforms becomes more and more complicated.Describing this complicated parallelism hierarchy in future computational models becomes more and more important.A semi-automatic toolkit that can extract model parameters and their values on real computers can reduce the model analysis complexity,thus allowing more complicated models with more parameters to be adopted.Hierarchical memory and hierarchical parallelism will be two very important features that should be considered in future model design and research.

  3. Parallel-quadrature phase-shifting digital holographic microscopy using polarization beam splitter.

    Science.gov (United States)

    Das, Bhargab; Yelleswarapu, Chandra S; Rao, Dvgln

    2012-11-01

    We present a digital holography microscopy technique based on parallel-quadrature phase-shifting method. Two π/2 phase-shifted holograms are recorded simultaneously using polarization phase-shifting principle, slightly off-axis recording geometry, and two identical CCD sensors. The parallel phase-shifting is realized by combining circularly polarized object beam with a 45° degree polarized reference beam through a polarizing beam splitter. DC term is eliminated by subtracting the two holograms from each other and the object information is reconstructed after selecting the frequency spectrum of the real image. Both amplitude and phase object reconstruction results are presented. Simultaneous recording eliminates phase errors caused by mechanical vibrations and air turbulences. The slightly off-axis recording geometry with phase-shifting allows a much larger dimension of the spatial filter for reconstruction of the object information. This leads to better reconstruction capability than traditional off-axis holography.

  4. Parallel local approximation MCMC for expensive models

    OpenAIRE

    Conrad, Patrick; Davis, Andrew; Marzouk, Youssef; Pillai, Natesh; Smith, Aaron

    2016-01-01

    Performing Bayesian inference via Markov chain Monte Carlo (MCMC) can be exceedingly expensive when posterior evaluations invoke the evaluation of a computationally expensive model, such as a system of partial differential equations. In recent work [Conrad et al. JASA 2015, arXiv:1402.1694] we described a framework for constructing and refining local approximations of such models during an MCMC simulation. These posterior--adapted approximations harness regularity of the model to reduce the c...

  5. Parallel Dynamics of Continuous Hopfield Model Revisited

    Science.gov (United States)

    Mimura, Kazushi

    2009-03-01

    We have applied the generating functional analysis (GFA) to the continuous Hopfield model. We have also confirmed that the GFA predictions in some typical cases exhibit good consistency with computer simulation results. When a retarded self-interaction term is omitted, the GFA result becomes identical to that obtained using the statistical neurodynamics as well as the case of the sequential binary Hopfield model.

  6. Towards a streaming model for nested data parallelism

    DEFF Research Database (Denmark)

    Madsen, Frederik Meisner; Filinski, Andrzej

    2013-01-01

    -flattening execution strategy, comes at the price of potentially prohibitive space usage in the common case of computations with an excess of available parallelism, such as dense-matrix multiplication. We present a simple nested data-parallel functional language and associated cost semantics that retains NESL......'s intuitive work--depth model for time complexity, but also allows highly parallel computations to be expressed in a space-efficient way, in the sense that memory usage on a single (or a few) processors is of the same order as for a sequential formulation of the algorithm, and in general scales smoothly......-processable in a streaming fashion. This semantics is directly compatible with previously proposed piecewise execution models for nested data parallelism, but allows the expected space usage to be reasoned about directly at the source-language level. The language definition and implementation are still very much work...

  7. Optimisation of a parallel ocean general circulation model

    Directory of Open Access Journals (Sweden)

    M. I. Beare

    Full Text Available This paper presents the development of a general-purpose parallel ocean circulation model, for use on a wide range of computer platforms, from traditional scalar machines to workstation clusters and massively parallel processors. Parallelism is provided, as a modular option, via high-level message-passing routines, thus hiding the technical intricacies from the user. An initial implementation highlights that the parallel efficiency of the model is adversely affected by a number of factors, for which optimisations are discussed and implemented. The resulting ocean code is portable and, in particular, allows science to be achieved on local workstations that could otherwise only be undertaken on state-of-the-art supercomputers.

  8. Modeling and Control of Primary Parallel Isolated Boost Converter

    DEFF Research Database (Denmark)

    Mira Albert, Maria del Carmen; Hernandez Botella, Juan Carlos; Sen, Gökhan

    2012-01-01

    In this paper state space modeling and closed loop controlled operation have been presented for primary parallel isolated boost converter (PPIBC) topology as a battery charging unit. Parasitic resistances have been included to have an accurate dynamic model. The accuracy of the model has been tes...

  9. Phase-conjugate interferometer to estimate refractive index and thickness of transparent plane parallel plates

    Energy Technology Data Exchange (ETDEWEB)

    Pastrana-Sanchez, R.; Rodriguez-Zurita, G.; Vazquez-Castillo, J. F. [Benemerita Universidad Autonoma de Puebla, Puebla (Mexico)

    2001-04-01

    A technique to estimate the refractive index and thickness of homogeneous plane parallel dielectric plates is proposed using a phase-conjugate interferometer, in which counting of interference fringes is employed. The light beam impinges a tilted plate before it enters a phase-conjugate interferometer, and a count of the fringes passing through a given reference at the observing plane gives the phase changes as a function of tilting angle. The obtained data is fitted to a mathematical model, which leads to the determination of both refractive index and thickness simultaneously. In this letter, experimental data from two interferometers are also discussed for comparison. One with an externally-pumped phase-conjugate mirror achieved with a BSO photorefractive crystal and another one with conventional mirrors. Results show that the phase sensitivity of the phase-conjugate interferometer is not simply twice the corresponding sensitivity of the conventional version. [Spanish] Se propone una tecnica para medir indices de refraccion y espesores de placas dielectricas plano paralelas homogeneas empleando un interferometro con fase conjugada, en el cual se usa el conteo de franjas. El haz luminoso incide en una placa inclinada bajo inspeccion antes de entrar en un interferometro equipado con un espejo conjugador de fase, y se realiza un conteo de las franjas que pasan por determinada referencia en el plano de observacion, proporcionando los cambios de fase en funcion del angulo de inclinacion. Los datos obtenidos se ajustan a un modelo, el cual conduce a la determinacion, tanto del indice de refraccion como del espesor, simultaneamente. En este trabajo se discuten datos experimentales provenientes de dos interferometros para su comparacion. Uno de ellos tiene un espejo conjugador basado en un cristal BSO fotorrefractivo, mientras que el otro es una variante con espejos convencionales. Se muestra que la sensibilidad de fase del interferometro con conjugador de fase no

  10. The research of parallel-coupled linear-phase superconducting filter

    Science.gov (United States)

    Zhang, Tianliang; Zhou, Liguo; Yang, Kai; Luo, Chao; Jiang, Mingyan; Dang, Wei; Ren, Xiangyang

    2015-12-01

    This paper presents a research on the mechanism of a linear phase filter constructed with parallel-connected sub-networks, considering that linear phase characteristic of a filter can be achieved when the group delays of sub-networks compensate each other. This paper also gives several coupling and routing diagrams of linear phase filters with different parallel-connected networks, and then the coupling matrixes of three 8-order filters and one 10-order filter are synthesized. One of the coupling matrixes is utilized to design a 8-order parallel-connected network high temperature superconducting (HTS) linear phase filter with two pairs of transmission zeros, so as to verify the correctness of theory data and the feasibility of the circuit design for the proposed 8-order and higher order parallel-connected network linear phase filter. The HTS linear phase filter is designed on YBCO/LaAlO3/YBCO superconducting substrate, at 77 K, the measured center frequency is 2000 MHz with a bandwidth of 30 MHz, the insertion loss is less than 0.3 dB and the reflection is better than -12.5 dB in passband. The group delay is less than ±5 ns over the 60% passband, which shows that the filter has a good linear phase characteristic.

  11. Sharing of nonlinear load in parallel-connected three-phase converters

    DEFF Research Database (Denmark)

    Borup, Uffe; Blaabjerg, Frede; Enjeti, Prasad N.

    2001-01-01

    In this paper, a new control method is presented which enables equal sharing of linear and nonlinear loads in three-phase power converters connected in parallel, without communication between the converters. The paper focuses on solving the problem that arises when two converters with harmonic...... compensation are connected in parallel. Without the new solution, they are normally not able to distinguish the harmonic currents that flow to the load and harmonic currents that circulate between the converters. Analysis and experimental results on two 90-kVA 400-Hz converters in parallel are presented....... The results show that both linear and nonlinear loads can be shared equally by the proposed concept....

  12. Modelling parallel programs and multiprocessor architectures with AXE

    Science.gov (United States)

    Yan, Jerry C.; Fineman, Charles E.

    1991-01-01

    AXE, An Experimental Environment for Parallel Systems, was designed to model and simulate for parallel systems at the process level. It provides an integrated environment for specifying computation models, multiprocessor architectures, data collection, and performance visualization. AXE is being used at NASA-Ames for developing resource management strategies, parallel problem formulation, multiprocessor architectures, and operating system issues related to the High Performance Computing and Communications Program. AXE's simple, structured user-interface enables the user to model parallel programs and machines precisely and efficiently. Its quick turn-around time keeps the user interested and productive. AXE models multicomputers. The user may easily modify various architectural parameters including the number of sites, connection topologies, and overhead for operating system activities. Parallel computations in AXE are represented as collections of autonomous computing objects known as players. Their use and behavior is described. Performance data of the multiprocessor model can be observed on a color screen. These include CPU and message routing bottlenecks, and the dynamic status of the software.

  13. Parallelizing the Cellular Potts Model on graphics processing units

    Science.gov (United States)

    Tapia, José Juan; D'Souza, Roshan M.

    2011-04-01

    The Cellular Potts Model (CPM) is a lattice based modeling technique used for simulating cellular structures in computational biology. The computational complexity of the model means that current serial implementations restrict the size of simulation to a level well below biological relevance. Parallelization on computing clusters enables scaling the size of the simulation but marginally addresses computational speed due to the limited memory bandwidth between nodes. In this paper we present new data-parallel algorithms and data structures for simulating the Cellular Potts Model on graphics processing units. Our implementations handle most terms in the Hamiltonian, including cell-cell adhesion constraint, cell volume constraint, cell surface area constraint, and cell haptotaxis. We use fine level checkerboards with lock mechanisms using atomic operations to enable consistent updates while maintaining a high level of parallelism. A new data-parallel memory allocation algorithm has been developed to handle cell division. Tests show that our implementation enables simulations of >10 cells with lattice sizes of up to 256 3 on a single graphics card. Benchmarks show that our implementation runs ˜80× faster than serial implementations, and ˜5× faster than previous parallel implementations on computing clusters consisting of 25 nodes. The wide availability and economy of graphics cards mean that our techniques will enable simulation of realistically sized models at a fraction of the time and cost of previous implementations and are expected to greatly broaden the scope of CPM applications.

  14. Towards an Accurate Performance Modeling of Parallel SparseFactorization

    Energy Technology Data Exchange (ETDEWEB)

    Grigori, Laura; Li, Xiaoye S.

    2006-05-26

    We present a performance model to analyze a parallel sparseLU factorization algorithm on modern cached-based, high-end parallelarchitectures. Our model characterizes the algorithmic behavior bytakingaccount the underlying processor speed, memory system performance, aswell as the interconnect speed. The model is validated using theSuperLU_DIST linear system solver, the sparse matrices from realapplications, and an IBM POWER3 parallel machine. Our modelingmethodology can be easily adapted to study performance of other types ofsparse factorizations, such as Cholesky or QR.

  15. Advances in parallel computer technology for desktop atmospheric dispersion models

    Energy Technology Data Exchange (ETDEWEB)

    Bian, X.; Ionescu-Niscov, S.; Fast, J.D. [Pacific Northwest National Lab., Richland, WA (United States); Allwine, K.J. [Allwine Enviornmental Serv., Richland, WA (United States)

    1996-12-31

    Desktop models are those models used by analysts with varied backgrounds, for performing, for example, air quality assessment and emergency response activities. These models must be robust, well documented, have minimal and well controlled user inputs, and have clear outputs. Existing coarse-grained parallel computers can provide significant increases in computation speed in desktop atmospheric dispersion modeling without considerable increases in hardware cost. This increased speed will allow for significant improvements to be made in the scientific foundations of these applied models, in the form of more advanced diffusion schemes and better representation of the wind and turbulence fields. This is especially attractive for emergency response applications where speed and accuracy are of utmost importance. This paper describes one particular application of coarse-grained parallel computer technology to a desktop complex terrain atmospheric dispersion modeling system. By comparing performance characteristics of the coarse-grained parallel version of the model with the single-processor version, we will demonstrate that applying coarse-grained parallel computer technology to desktop atmospheric dispersion modeling systems will allow us to address critical issues facing future requirements of this class of dispersion models.

  16. Phase Field Modeling Using PetIGA

    KAUST Repository

    Vignal, Philippe A.

    2013-06-01

    Phase field modeling has become a widely used framework in the computational material science community. Its ability to model different problems by defining appropriate phase field parameters and relating it to a free energy functional makes it highly versatile. Thermodynamically consistent partial differential equations can then be generated by assuming dissipative dynamics, and setting up the problem as one of minimizing this free energy. The equations are nonetheless challenging to solve, and having a highly efficient and parallel framework to solve them is necessary. In this work, a brief review on phase field models is given, followed by a short analysis of the Phase Field Crystal Model solved with Isogeometric Analysis us- ing PetIGA. We end with an introduction to a new modeling concept, where free energy functions are built with a periodic equilibrium structure in mind.

  17. (Studies of ocean predictability at decade to century time scales using a global ocean general circulation model in a parallel competing environment). [Large Scale Geostrophic Model

    Energy Technology Data Exchange (ETDEWEB)

    1992-03-10

    The first phase of the proposed work is largely completed on schedule. Scientists at the San Diego Supercomputer Center (SDSC) succeeded in putting a version of the Hamburg isopycnal coordinate ocean model (OPYC) onto the INTEL parallel computer. Due to the slow run speeds of the OPYC on the parallel machine, another ocean is being model used during the first part of phase 2. The model chosen is the Large Scale Geostrophic (LSG) model form the Max Planck Institute.

  18. Possible ground states and parallel magnetic-field-driven phase transitions of collinear antiferromagnets

    Science.gov (United States)

    Li, Hai-Feng

    2016-10-01

    Understanding the nature of all possible ground states and especially magnetic-field-driven phase transitions of antiferromagnets represents a major step towards unravelling the real nature of interesting phenomena such as superconductivity, multiferroicity or magnetoresistance in condensed-matter science. Here a consistent mean-field calculation endowed with antiferromagnetic (AFM) exchange interaction (J), easy axis anisotropy (γ), uniaxial single-ion anisotropy (D) and Zeeman coupling to a magnetic field parallel to the AFM easy axis consistently unifies the AFM state, spin-flop (SFO) and spin-flip transitions. We reveal some mathematically allowed exotic spin states and fluctuations depending on the relative coupling strength of (J, γ and D). We build the three-dimensional (J, γ and D) and two-dimensional (γ and D) phase diagrams clearly displaying the equilibrium phase conditions and discuss the origins of various magnetic states as well as their transitions in different couplings. Besides the traditional first-order type one, we unambiguously confirm an existence of a second-order type SFO transition. This study provides an integrated theoretical model for the magnetic states of collinear antiferromagnets with two interpenetrating sublattices and offers a practical approach as an alternative to the estimation of magnetic exchange parameters (J, γ and D), and the results may shed light on nontrivial magnetism-related properties of bulks, thin films and nanostructures of correlated electron systems.

  19. Performance of Air Pollution Models on Massively Parallel Computers

    DEFF Research Database (Denmark)

    Brown, John; Hansen, Per Christian; Wasniewski, Jerzy

    1996-01-01

    To compare the performance and use of three massively parallel SIMD computers, we implemented a large air pollution model on the computers. Using a realistic large-scale model, we gain detailed insight about the performance of the three computers when used to solve large-scale scientific problems...

  20. Term Structure Models with Parallel and Proportional Shifts

    DEFF Research Database (Denmark)

    Armerin, Frederik; Björk, Tomas; Astrup Jensen, Bjarne

    this general framework we show that there does indeed exist a large variety of nontrivial parallel shift term structure models, and we also describe these in detail. We also show that there exists no nontrivial flat term structure model. The same analysis is repeated for the similar case, where the yield curve...

  1. Vectorial Preisach-type model designed for parallel computing

    Energy Technology Data Exchange (ETDEWEB)

    Stancu, Alexandru [Department of Solid State and Theoretical Physics, Al. I. Cuza University, Blvd. Carol I, 11, 700506 Iasi (Romania)]. E-mail: alstancu@uaic.ro; Stoleriu, Laurentiu [Department of Solid State and Theoretical Physics, Al. I. Cuza University, Blvd. Carol I, 11, 700506 Iasi (Romania); Andrei, Petru [Electrical and Computer Engineering, Florida State University, Tallahassee, FL (United States); Electrical and Computer Engineering, Florida A and M University, Tallahassee, FL (United States)

    2007-09-15

    Most of the hysteresis phenomenological models are scalar, while all the magnetization processes are vectorial. The vector models-phenomenological or micromagnetic (physical)-are time consuming and sometimes difficult to implement. In this paper, we introduce a new vector Preisach-type model that uses micromagnetic results to simulate the magnetic response of a system of several tens of thousands of pseudo-particles. The model has a modular structure that allows easy implementation for parallel computing.

  2. A hybrid parallel framework for the cellular Potts model simulations

    Energy Technology Data Exchange (ETDEWEB)

    Jiang, Yi [Los Alamos National Laboratory; He, Kejing [SOUTH CHINA UNIV; Dong, Shoubin [SOUTH CHINA UNIV

    2009-01-01

    The Cellular Potts Model (CPM) has been widely used for biological simulations. However, most current implementations are either sequential or approximated, which can't be used for large scale complex 3D simulation. In this paper we present a hybrid parallel framework for CPM simulations. The time-consuming POE solving, cell division, and cell reaction operation are distributed to clusters using the Message Passing Interface (MPI). The Monte Carlo lattice update is parallelized on shared-memory SMP system using OpenMP. Because the Monte Carlo lattice update is much faster than the POE solving and SMP systems are more and more common, this hybrid approach achieves good performance and high accuracy at the same time. Based on the parallel Cellular Potts Model, we studied the avascular tumor growth using a multiscale model. The application and performance analysis show that the hybrid parallel framework is quite efficient. The hybrid parallel CPM can be used for the large scale simulation ({approx}10{sup 8} sites) of complex collective behavior of numerous cells ({approx}10{sup 6}).

  3. Badlands: A parallel basin and landscape dynamics model

    Directory of Open Access Journals (Sweden)

    T. Salles

    2016-01-01

    Full Text Available Over more than three decades, a number of numerical landscape evolution models (LEMs have been developed to study the combined effects of climate, sea-level, tectonics and sediments on Earth surface dynamics. Most of them are written in efficient programming languages, but often cannot be used on parallel architectures. Here, I present a LEM which ports a common core of accepted physical principles governing landscape evolution into a distributed memory parallel environment. Badlands (acronym for BAsin anD LANdscape DynamicS is an open-source, flexible, TIN-based landscape evolution model, built to simulate topography development at various space and time scales.

  4. Genetic Algorithm Modeling with GPU Parallel Computing Technology

    CERN Document Server

    Cavuoti, Stefano; Brescia, Massimo; Pescapé, Antonio; Longo, Giuseppe; Ventre, Giorgio

    2012-01-01

    We present a multi-purpose genetic algorithm, designed and implemented with GPGPU / CUDA parallel computing technology. The model was derived from a multi-core CPU serial implementation, named GAME, already scientifically successfully tested and validated on astrophysical massive data classification problems, through a web application resource (DAMEWARE), specialized in data mining based on Machine Learning paradigms. Since genetic algorithms are inherently parallel, the GPGPU computing paradigm has provided an exploit of the internal training features of the model, permitting a strong optimization in terms of processing performances and scalability.

  5. Inverse kinematics model of parallel macro-micro manipulator system

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    An improved design, which employs the integration of optic, mechanical and electronic technologies for the next generation large radio telescope, is presented in this note. The authors propose the concept of parallel macro-micro manipulator system from the feed support structure with a rough tuning subsystem based on a cable structure and a fine tuning subsystem based on the Stewart platform. According to the requirement of astronomical observation, the inverse kinematics model of this parallel macro-micro manipulator system is deduced. This inverse kinematics model is necessary for the computer-controlled motion of feed.

  6. Grid Service Framework:Supporting Multi-Models Parallel Grid Programming

    Institute of Scientific and Technical Information of China (English)

    邓倩妮; 陆鑫达

    2004-01-01

    Web service is a grid computing technology that promises greater ease-of-use and interoperability than previous distributed computing technologies. This paper proposed Group Service Framework, a grid computing platform based on Microsoft. NET that use web service to: (1) locate and harness volunteer computing resources for different applications, and (2) support multi-models such as Master/Slave, Divide and Conquer, Phase Parallel and so forth parallel programming paradigms in Grid environment, (3) allocate data and balance load dynamically and transparently for grid computing application. The Grid Service Framework based on Microsoft. NET was used to implement several simple parallel computing applications. The results show that the proposed Group Service Framework is suitable for generic parallel numerical computing.

  7. DOE SBIR Phase-1 Report on Hybrid CPU-GPU Parallel Development of the Eulerian-Lagrangian Barracuda Multiphase Program

    Energy Technology Data Exchange (ETDEWEB)

    Dr. Dale M. Snider

    2011-02-28

    This report gives the result from the Phase-1 work on demonstrating greater than 10x speedup of the Barracuda computer program using parallel methods and GPU processors (General-Purpose Graphics Processing Unit or Graphics Processing Unit). Phase-1 demonstrated a 12x speedup on a typical Barracuda function using the GPU processor. The problem test case used about 5 million particles and 250,000 Eulerian grid cells. The relative speedup, compared to a single CPU, increases with increased number of particles giving greater than 12x speedup. Phase-1 work provided a path for reformatting data structure modifications to give good parallel performance while keeping a friendly environment for new physics development and code maintenance. The implementation of data structure changes will be in Phase-2. Phase-1 laid the ground work for the complete parallelization of Barracuda in Phase-2, with the caveat that implemented computer practices for parallel programming done in Phase-1 gives immediate speedup in the current Barracuda serial running code. The Phase-1 tasks were completed successfully laying the frame work for Phase-2. The detailed results of Phase-1 are within this document. In general, the speedup of one function would be expected to be higher than the speedup of the entire code because of I/O functions and communication between the algorithms. However, because one of the most difficult Barracuda algorithms was parallelized in Phase-1 and because advanced parallelization methods and proposed parallelization optimization techniques identified in Phase-1 will be used in Phase-2, an overall Barracuda code speedup (relative to a single CPU) is expected to be greater than 10x. This means that a job which takes 30 days to complete will be done in 3 days. Tasks completed in Phase-1 are: Task 1: Profile the entire Barracuda code and select which subroutines are to be parallelized (See Section Choosing a Function to Accelerate) Task 2: Select a GPU consultant company and

  8. A one-dimensional heat transfer model for parallel-plate thermoacoustic heat exchangers.

    Science.gov (United States)

    de Jong, J A; Wijnant, Y H; de Boer, A

    2014-03-01

    A one-dimensional (1D) laminar oscillating flow heat transfer model is derived and applied to parallel-plate thermoacoustic heat exchangers. The model can be used to estimate the heat transfer from the solid wall to the acoustic medium, which is required for the heat input/output of thermoacoustic systems. The model is implementable in existing (quasi-)1D thermoacoustic codes, such as DeltaEC. Examples of generated results show good agreement with literature results. The model allows for arbitrary wave phasing; however, it is shown that the wave phasing does not significantly influence the heat transfer.

  9. Advanced parallel programming models research and development opportunities.

    Energy Technology Data Exchange (ETDEWEB)

    Wen, Zhaofang.; Brightwell, Ronald Brian

    2004-07-01

    There is currently a large research and development effort within the high-performance computing community on advanced parallel programming models. This research can potentially have an impact on parallel applications, system software, and computing architectures in the next several years. Given Sandia's expertise and unique perspective in these areas, particularly on very large-scale systems, there are many areas in which Sandia can contribute to this effort. This technical report provides a survey of past and present parallel programming model research projects and provides a detailed description of the Partitioned Global Address Space (PGAS) programming model. The PGAS model may offer several improvements over the traditional distributed memory message passing model, which is the dominant model currently being used at Sandia. This technical report discusses these potential benefits and outlines specific areas where Sandia's expertise could contribute to current research activities. In particular, we describe several projects in the areas of high-performance networking, operating systems and parallel runtime systems, compilers, application development, and performance evaluation.

  10. Financial Data Modeling by Using Asynchronous Parallel Evolutionary Algorithms

    Institute of Scientific and Technical Information of China (English)

    Wang Chun; Li Qiao-yun

    2003-01-01

    In this paper, the high-level knowledge of financial data modeled by ordinary differential equations (ODEs) is discovered in dynamic data by using an asynchronous parallel evolutionary modeling algorithm (APHEMA). A numerical example of Nasdaq index analysis is used to demonstrate the potential of APHEMA. The results show that the dynamic models automatically discovered in dynamic data by computer can be used to predict the financial trends.

  11. Parallel finite element modeling of earthquake ground response and liquefaction

    Institute of Scientific and Technical Information of China (English)

    Jinchi Lu(陆金池); Jun Peng(彭军); Ahmed Elgamal; Zhaohui Yang(杨朝晖); Kincho H. Law

    2004-01-01

    Parallel computing is a promising approach to alleviate the computational demand in conducting large-scale finite element analyses. This paper presents a numerical modeling approach for earthquake ground response and liquefaction using the parallel nonlinear finite element program, ParCYCLIC, designed for distributed-memory message-passing parallel computer systems. In ParCYCLIC, finite elements are employed within an incremental plasticity, coupled solid-fluid formulation. A constitutive model calibrated by physical tests represents the salient characteristics of sand liquefaction and associated accumulation of shear deformations. Key elements of the computational strategy employed in ParCYCLIC include the development of a parallel sparse direct solver, the deployment of an automatic domain decomposer, and the use of the Multilevel Nested Dissection algorithm for ordering of the finite element nodes. Simulation results of centrifuge test models using ParCYCLIC are presented. Performance results from grid models and geotechnical simulations show that ParCYCLIC is efficiently scalable to a large number of processors.

  12. The Extended Parallel Process Model: Illuminating the Gaps in Research

    Science.gov (United States)

    Popova, Lucy

    2012-01-01

    This article examines constructs, propositions, and assumptions of the extended parallel process model (EPPM). Review of the EPPM literature reveals that its theoretical concepts are thoroughly developed, but the theory lacks consistency in operational definitions of some of its constructs. Out of the 12 propositions of the EPPM, a few have not…

  13. Postscript: Parallel Distributed Processing in Localist Models without Thresholds

    Science.gov (United States)

    Plaut, David C.; McClelland, James L.

    2010-01-01

    The current authors reply to a response by Bowers on a comment by the current authors on the original article. Bowers (2010) mischaracterizes the goals of parallel distributed processing (PDP research)--explaining performance on cognitive tasks is the primary motivation. More important, his claim that localist models, such as the interactive…

  14. Methods and models for the construction of weakly parallel tests

    NARCIS (Netherlands)

    Adema, Jos J.

    1992-01-01

    Several methods are proposed for the construction of weakly parallel tests [i.e., tests with the same test information function (TIF)]. A mathematical programming model that constructs tests containing a prespecified TIF and a heuristic that assigns items to tests with information functions that are

  15. Postscript: Parallel Distributed Processing in Localist Models without Thresholds

    Science.gov (United States)

    Plaut, David C.; McClelland, James L.

    2010-01-01

    The current authors reply to a response by Bowers on a comment by the current authors on the original article. Bowers (2010) mischaracterizes the goals of parallel distributed processing (PDP research)--explaining performance on cognitive tasks is the primary motivation. More important, his claim that localist models, such as the interactive…

  16. Modeling and optimization of parallel and distributed embedded systems

    CERN Document Server

    Munir, Arslan; Ranka, Sanjay

    2016-01-01

    This book introduces the state-of-the-art in research in parallel and distributed embedded systems, which have been enabled by developments in silicon technology, micro-electro-mechanical systems (MEMS), wireless communications, computer networking, and digital electronics. These systems have diverse applications in domains including military and defense, medical, automotive, and unmanned autonomous vehicles. The emphasis of the book is on the modeling and optimization of emerging parallel and distributed embedded systems in relation to the three key design metrics of performance, power and dependability.

  17. X: A Comprehensive Analytic Model for Parallel Machines

    Energy Technology Data Exchange (ETDEWEB)

    Li, Ang; Song, Shuaiwen; Brugel, Eric; Kumar, Akash; Chavarría-Miranda, Daniel; Corporaal, Henk

    2016-05-23

    To continuously comply with Moore’s Law, modern parallel machines become increasingly complex. Effectively tuning application performance for these machines therefore becomes a daunting task. Moreover, identifying performance bottlenecks at application and architecture level, as well as evaluating various optimization strategies, are becoming extremely difficult when the entanglement of numerous correlated factors is being presented. To tackle these challenges, we present a visual analytical model named “X”. It is intuitive and sufficiently flexible to track all the typical features of a parallel machine.

  18. Dynamic modeling of flexible-links planar parallel robots

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    This paper presents a finite element-based method for dynamic modeling of parallel robots with flexible links and rigid moving platform.The elastic displacements of flexible links are investigated while considering the coupling effects between links due to the structural flexibility.The kinematic constraint conditions and dynamic constraint conditions for elastic displacements are presented.Considering the effects of distributed mass,lumped mass,shearing deformation,bending deformation,tensile deformation and lateral displacements,the Kineto-Elasto dynamics (KED) theory and Lagrange formula are used to derive the dynamic equations of planar flexible-links parallel robots.The dynamic behavior of the flexible-links planar parallel robot is well illustrated through numerical simulation of a planar 3-RRR parallel robot.Compared with the results of finite element software SAMCEF,the numerical simulation results show good coherence of the proposed method.The flexibility of links is demonstrated to have a significant impact on the position error and orientation error of the flexiblelinks planar parallel robot.

  19. Parallelization of a hydrological model using the message passing interface

    Science.gov (United States)

    Wu, Yiping; Li, Tiejian; Sun, Liqun; Chen, Ji

    2013-01-01

    With the increasing knowledge about the natural processes, hydrological models such as the Soil and Water Assessment Tool (SWAT) are becoming larger and more complex with increasing computation time. Additionally, other procedures such as model calibration, which may require thousands of model iterations, can increase running time and thus further reduce rapid modeling and analysis. Using the widely-applied SWAT as an example, this study demonstrates how to parallelize a serial hydrological model in a Windows® environment using a parallel programing technology—Message Passing Interface (MPI). With a case study, we derived the optimal values for the two parameters (the number of processes and the corresponding percentage of work to be distributed to the master process) of the parallel SWAT (P-SWAT) on an ordinary personal computer and a work station. Our study indicates that model execution time can be reduced by 42%–70% (or a speedup of 1.74–3.36) using multiple processes (two to five) with a proper task-distribution scheme (between the master and slave processes). Although the computation time cost becomes lower with an increasing number of processes (from two to five), this enhancement becomes less due to the accompanied increase in demand for message passing procedures between the master and all slave processes. Our case study demonstrates that the P-SWAT with a five-process run may reach the maximum speedup, and the performance can be quite stable (fairly independent of a project size). Overall, the P-SWAT can help reduce the computation time substantially for an individual model run, manual and automatic calibration procedures, and optimization of best management practices. In particular, the parallelization method we used and the scheme for deriving the optimal parameters in this study can be valuable and easily applied to other hydrological or environmental models.

  20. Performance of Air Pollution Models on Massively Parallel Computers

    DEFF Research Database (Denmark)

    Brown, John; Hansen, Per Christian; Wasniewski, Jerzy

    1996-01-01

    To compare the performance and use of three massively parallel SIMD computers, we implemented a large air pollution model on the computers. Using a realistic large-scale model, we gain detailed insight about the performance of the three computers when used to solve large-scale scientific problems...... that involve several types of numerical computations. The computers considered in our study are the Connection Machines CM-200 and CM-5, and the MasPar MP-2216...

  1. Parallel Computation of the Regional Ocean Modeling System (ROMS)

    Energy Technology Data Exchange (ETDEWEB)

    Wang, P; Song, Y T; Chao, Y; Zhang, H

    2005-04-05

    The Regional Ocean Modeling System (ROMS) is a regional ocean general circulation modeling system solving the free surface, hydrostatic, primitive equations over varying topography. It is free software distributed world-wide for studying both complex coastal ocean problems and the basin-to-global scale ocean circulation. The original ROMS code could only be run on shared-memory systems. With the increasing need to simulate larger model domains with finer resolutions and on a variety of computer platforms, there is a need in the ocean-modeling community to have a ROMS code that can be run on any parallel computer ranging from 10 to hundreds of processors. Recently, we have explored parallelization for ROMS using the MPI programming model. In this paper, an efficient parallelization strategy for such a large-scale scientific software package, based on an existing shared-memory computing model, is presented. In addition, scientific applications and data-performance issues on a couple of SGI systems, including Columbia, the world's third-fastest supercomputer, are discussed.

  2. Speedup properties of phases in the execution profile of distributed parallel programs

    Energy Technology Data Exchange (ETDEWEB)

    Carlson, B.M. [Toronto Univ., ON (Canada). Computer Systems Research Institute; Wagner, T.D.; Dowdy, L.W. [Vanderbilt Univ., Nashville, TN (United States). Dept. of Computer Science; Worley, P.H. [Oak Ridge National Lab., TN (United States)

    1992-08-01

    The execution profile of a distributed-memory parallel program specifies the number of busy processors as a function of time. Periods of homogeneous processor utilization are manifested in many execution profiles. These periods can usually be correlated with the algorithms implemented in the underlying parallel code. Three families of methods for smoothing execution profile data are presented. These approaches simplify the problem of detecting end points of periods of homogeneous utilization. These periods, called phases, are then examined in isolation, and their speedup characteristics are explored. A specific workload executed on an Intel iPSC/860 is used for validation of the techniques described.

  3. Model-driven product line engineering for mapping parallel algorithms to parallel computing platforms

    NARCIS (Netherlands)

    Arkin, Ethem; Tekinerdogan, Bedir

    2016-01-01

    Mapping parallel algorithms to parallel computing platforms requires several activities such as the analysis of the parallel algorithm, the definition of the logical configuration of the platform, the mapping of the algorithm to the logical configuration platform and the implementation of the sou

  4. Parallelization of MATLAB for Euro50 integrated modeling

    Science.gov (United States)

    Browne, Michael; Andersen, Torben E.; Enmark, Anita; Moraru, Dan; Shearer, Andrew

    2004-09-01

    MATLAB and its companion product Simulink are commonly used tools in systems modelling and other scientific disciplines. A cross-disciplinary integrated MATLAB model is used to study the overall performance of the proposed 50m optical and infrared telescope, Euro50. However the computational requirements of this kind of end-to-end simulation of the telescope's behaviour, exceeds the capability of an individual contemporary Personal Computer. By parallelizing the model, primarily on a functional basis, it can be implemented across a Beowulf cluster of generic PCs. This requires MATLAB to distribute in some way data and calculations to the cluster nodes and combine completed results. There have been a number of attempts to produce toolkits to allow MATLAB to be used in a parallel fashion. They have used a variety of techniques. Here we present findings from using some of these toolkits and proposed advances.

  5. Numerical modeling of parallel-plate based AMR

    DEFF Research Database (Denmark)

    In this work we present an improved 2-dimensional numerical model of a parallel-plate based AMR. The model includes heat transfer in fluid and magnetocaloric domains respectively. The domains are coupled via inner thermal boundaries. The MCE is modeled either as an instantaneous change between high...... and low field or as a magnetic field profile including the actual physical movement of the regenerator block in and out of field, i.e. as a source term in the thermal equation for the magnetocaloric material (MCM). The model is further developed to include parasitic thermal losses throughout the bed...

  6. Exploration Of Deep Learning Algorithms Using Openacc Parallel Programming Model

    KAUST Repository

    Hamam, Alwaleed A.

    2017-03-13

    Deep learning is based on a set of algorithms that attempt to model high level abstractions in data. Specifically, RBM is a deep learning algorithm that used in the project to increase it\\'s time performance using some efficient parallel implementation by OpenACC tool with best possible optimizations on RBM to harness the massively parallel power of NVIDIA GPUs. GPUs development in the last few years has contributed to growing the concept of deep learning. OpenACC is a directive based ap-proach for computing where directives provide compiler hints to accelerate code. The traditional Restricted Boltzmann Ma-chine is a stochastic neural network that essentially perform a binary version of factor analysis. RBM is a useful neural net-work basis for larger modern deep learning model, such as Deep Belief Network. RBM parameters are estimated using an efficient training method that called Contrastive Divergence. Parallel implementation of RBM is available using different models such as OpenMP, and CUDA. But this project has been the first attempt to apply OpenACC model on RBM.

  7. Distributed parallel computing in stochastic modeling of groundwater systems.

    Science.gov (United States)

    Dong, Yanhui; Li, Guomin; Xu, Haizhen

    2013-03-01

    Stochastic modeling is a rapidly evolving, popular approach to the study of the uncertainty and heterogeneity of groundwater systems. However, the use of Monte Carlo-type simulations to solve practical groundwater problems often encounters computational bottlenecks that hinder the acquisition of meaningful results. To improve the computational efficiency, a system that combines stochastic model generation with MODFLOW-related programs and distributed parallel processing is investigated. The distributed computing framework, called the Java Parallel Processing Framework, is integrated into the system to allow the batch processing of stochastic models in distributed and parallel systems. As an example, the system is applied to the stochastic delineation of well capture zones in the Pinggu Basin in Beijing. Through the use of 50 processing threads on a cluster with 10 multicore nodes, the execution times of 500 realizations are reduced to 3% compared with those of a serial execution. Through this application, the system demonstrates its potential in solving difficult computational problems in practical stochastic modeling. © 2012, The Author(s). Groundwater © 2012, National Ground Water Association.

  8. Domain decomposition parallel computing for transient two-phase flow of nuclear reactors

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Jae Ryong; Yoon, Han Young [KAERI, Daejeon (Korea, Republic of); Choi, Hyoung Gwon [Seoul National University, Seoul (Korea, Republic of)

    2016-05-15

    KAERI (Korea Atomic Energy Research Institute) has been developing a multi-dimensional two-phase flow code named CUPID for multi-physics and multi-scale thermal hydraulics analysis of Light water reactors (LWRs). The CUPID code has been validated against a set of conceptual problems and experimental data. In this work, the CUPID code has been parallelized based on the domain decomposition method with Message passing interface (MPI) library. For domain decomposition, the CUPID code provides both manual and automatic methods with METIS library. For the effective memory management, the Compressed sparse row (CSR) format is adopted, which is one of the methods to represent the sparse asymmetric matrix. CSR format saves only non-zero value and its position (row and column). By performing the verification for the fundamental problem set, the parallelization of the CUPID has been successfully confirmed. Since the scalability of a parallel simulation is generally known to be better for fine mesh system, three different scales of mesh system are considered: 40000 meshes for coarse mesh system, 320000 meshes for mid-size mesh system, and 2560000 meshes for fine mesh system. In the given geometry, both single- and two-phase calculations were conducted. In addition, two types of preconditioners for a matrix solver were compared: Diagonal and incomplete LU preconditioner. In terms of enhancement of the parallel performance, the OpenMP and MPI hybrid parallel computing for a pressure solver was examined. It is revealed that the scalability of hybrid calculation was enhanced for the multi-core parallel computation.

  9. BSP模型下的并行程序设计与开发%Design and Development of Parallel Programs on Bulk Synchronous Parallel Model

    Institute of Scientific and Technical Information of China (English)

    赖树华; 陆朝俊; 孙永强

    2001-01-01

    The Bulk Synchronous Parallel (BSP) model was simply introduced, and the advantage of the parapllel program's design and development on BSP model was discussed. Then it analysed how to design and develop the parallel programs on BSP model and summarized several principles the developer must comply with. At last a useful parallel programming method based on the BSP model was presented: the two phase method of BSP parallel program design. An example was given to illustrate how to make use of the above method and the BSP performance prediction tool.%介绍了BSP(Bulk Synchronous Parallel)模型,讨论了在该模型下进行并行程序设计的优点、并行算法的分析和设计方法及其必须遵守的原则.以两矩阵的乘法为例说明了如何借助BSP并行程序性能预测工具,利用两阶段BSP并行程序设计方法进行BSP并行程序的设计和开发.

  10. Accuracy Improvement for Stiffness Modeling of Parallel Manipulators

    CERN Document Server

    Pashkevich, Anatoly; Chablat, Damien; Wenger, Philippe

    2009-01-01

    The paper focuses on the accuracy improvement of stiffness models for parallel manipulators, which are employed in high-speed precision machining. It is based on the integrated methodology that combines analytical and numerical techniques and deals with multidimensional lumped-parameter models of the links. The latter replace the link flexibility by localized 6-dof virtual springs describing both translational/rotational compliance and the coupling between them. There is presented detailed accuracy analysis of the stiffness identification procedures employed in the commercial CAD systems (including statistical analysis of round-off errors, evaluating the confidence intervals for stiffness matrices). The efficiency of the developed technique is confirmed by application examples, which deal with stiffness analysis of translational parallel manipulators.

  11. Center for Programming Models for Scalable Parallel Computing

    Energy Technology Data Exchange (ETDEWEB)

    John Mellor-Crummey

    2008-02-29

    Rice University's achievements as part of the Center for Programming Models for Scalable Parallel Computing include: (1) design and implemention of cafc, the first multi-platform CAF compiler for distributed and shared-memory machines, (2) performance studies of the efficiency of programs written using the CAF and UPC programming models, (3) a novel technique to analyze explicitly-parallel SPMD programs that facilitates optimization, (4) design, implementation, and evaluation of new language features for CAF, including communication topologies, multi-version variables, and distributed multithreading to simplify development of high-performance codes in CAF, and (5) a synchronization strength reduction transformation for automatically replacing barrier-based synchronization with more efficient point-to-point synchronization. The prototype Co-array Fortran compiler cafc developed in this project is available as open source software from http://www.hipersoft.rice.edu/caf.

  12. Final Report: Center for Programming Models for Scalable Parallel Computing

    Energy Technology Data Exchange (ETDEWEB)

    Mellor-Crummey, John [William Marsh Rice University

    2011-09-13

    As part of the Center for Programming Models for Scalable Parallel Computing, Rice University collaborated with project partners in the design, development and deployment of language, compiler, and runtime support for parallel programming models to support application development for the “leadership-class” computer systems at DOE national laboratories. Work over the course of this project has focused on the design, implementation, and evaluation of a second-generation version of Coarray Fortran. Research and development efforts of the project have focused on the CAF 2.0 language, compiler, runtime system, and supporting infrastructure. This has involved working with the teams that provide infrastructure for CAF that we rely on, implementing new language and runtime features, producing an open source compiler that enabled us to evaluate our ideas, and evaluating our design and implementation through the use of benchmarks. The report details the research, development, findings, and conclusions from this work.

  13. Load-balancing algorithms for the parallel community climate model

    Energy Technology Data Exchange (ETDEWEB)

    Foster, I.T.; Toonen, B.R.

    1995-01-01

    Implementations of climate models on scalable parallel computer systems can suffer from load imbalances resulting from temporal and spatial variations in the amount of computation required for physical parameterizations such as solar radiation and convective adjustment. We have developed specialized techniques for correcting such imbalances. These techniques are incorporated in a general-purpose, programmable load-balancing library that allows the mapping of computation to processors to be specified as a series of maps generated by a programmer-supplied load-balancing module. The communication required to move from one map to another is performed automatically by the library, without programmer intervention. In this paper, we describe the load-balancing problem and the techniques that we have developed to solve it. We also describe specific load-balancing algorithms that we have developed for PCCM2, a scalable parallel implementation of the Community Climate Model, and present experimental results that demonstrate the effectiveness of these algorithms on parallel computers. The load-balancing library developed in this work is available for use in other climate models.

  14. Exploitation of parallelism in climate models. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Baer, Ferdinand; Tribbia, Joseph J.; Williamson, David L.

    2001-02-05

    This final report includes details on the research accomplished by the grant entitled 'Exploitation of Parallelism in Climate Models' to the University of Maryland. The purpose of the grant was to shed light on (a) how to reconfigure the atmospheric prediction equations such that the time iteration process could be compressed by use of MPP architecture; (b) how to develop local subgrid scale models which can provide time and space dependent parameterization for a state-of-the-art climate model to minimize the scale resolution necessary for a climate model, and to utilize MPP capability to simultaneously integrate those subgrid models and their statistics; and (c) how to capitalize on the MPP architecture to study the inherent ensemble nature of the climate problem. In the process of addressing these issues, we created parallel algorithms with spectral accuracy; we developed a process for concurrent climate simulations; we established suitable model reconstructions to speed up computation; we identified and tested optimum realization statistics; we undertook a number of parameterization studies to better understand model physics; and we studied the impact of subgrid scale motions and their parameterization in atmospheric models.

  15. Controlling the object phase for g-factor reduction in phase-Constrained parallel MRI using spatially selective RF pulses.

    Science.gov (United States)

    Kettinger, Adam O; Kannengiesser, Stephan A R; Breuer, Felix A; Vidnyanszky, Zoltan; Blaimer, Martin

    2017-09-01

    Parallel imaging generally entails a reduction in the signal-to-noise ratio of the final image. Phase-constrained methods aim to improve reconstruction quality by using symmetry properties of k-space. Noise amplification in phase-constrained reconstruction depends heavily on the object background phase. The purpose of this work is to present a new approach of using tailored radiofrequency pulses to optimize the object phase distribution in order to maximize the benefit of phase-constrained reconstruction, and to minimize the noise amplification. Intrinsic object phase and coil sensitivity profiles are measured in a prescan. Optimal phase distribution is computed to maximize signal-to-noise ratio in the given setup. Tailored radiofrequency pulses are designed to introduce the optimal phase map in the following accelerated acquisitions, subsequently reconstructed by phase-constrained methods. The potential of the method is demonstrated in vivo with in-plane accelerated (8x) and simultaneous multislice (3x) acquisitions. Mean g-factors are reduced by up to a factor of 2 compared with conventional techniques when an appropriate phase-constrained reconstruction is applied to phase-optimized acquisitions, enhancing the signal-to-noise ratio of the final images and the visibility of small details. Combining phase-constrained reconstruction and phase optimization by tailored radiofrequency pulses can provide notable improvement in the signal-to-noise ratio and reconstruction quality of accelerated MRI. Magn Reson Med, 2017. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

  16. Effect of overpasses in the Biham-Middleton-Levine traffic flow model with random and parallel update rule

    Science.gov (United States)

    Ding, Zhong-Jun; Jiang, Rui; Gao, Zi-You; Wang, Bing-Hong; Long, Jiancheng

    2013-08-01

    The effect of overpasses in the Biham-Middleton-Levine traffic flow model with random and parallel update rules has been studied. An overpass is a site that can be occupied simultaneously by an eastbound car and a northbound one. Under periodic boundary conditions, both self-organized and random patterns are observed in the free-flowing phase of the parallel update model, while only the random pattern is observed in the random update model. We have developed mean-field analysis for the moving phase of the random update model, which agrees with the simulation results well. An intermediate phase is observed in which some cars could pass through the jamming cluster due to the existence of free paths in the random update model. Two intermediate states are observed in the parallel update model, which have been ignored in previous studies. The intermediate phases in which the jamming skeleton is only oriented along the diagonal line in both models have been analyzed, with the analyses agreeing well with the simulation results. With the increase of overpass ratio, the jamming phase and the intermediate phases disappear in succession for both models. Under open boundary conditions, the system exhibits only two phases when the ratio of overpasses is below a threshold in the random update model. When the ratio of the overpass is close to 1, three phases could be observed, similar to the totally asymmetric simple exclusion process model. The dependence of the average velocity, the density, and the flow rate on the injection probability in the moving phase has also been obtained through mean-field analysis. The results of the parallel model under open boundary conditions are similar to that of the random update model.

  17. Parallel J-W Monte Carlo Simulations of Thermal Phase Changes in Finite-size Systems

    CERN Document Server

    Radev, R

    2002-01-01

    The thermodynamic properties of 59 TeF6 clusters that undergo temperature-driven phase transitions have been calculated with a canonical J-walking Monte Carlo technique. A parallel code for simulations has been developed and optimized on SUN3500 and CRAY-T3E computers. The Lindemann criterion shows that the clusters transform from liquid to solid and then from one solid structure to another in the temperature region 60-130 K.

  18. Parallel Optimization of 3D Cardiac Electrophysiological Model Using GPU

    Directory of Open Access Journals (Sweden)

    Yong Xia

    2015-01-01

    Full Text Available Large-scale 3D virtual heart model simulations are highly demanding in computational resources. This imposes a big challenge to the traditional computation resources based on CPU environment, which already cannot meet the requirement of the whole computation demands or are not easily available due to expensive costs. GPU as a parallel computing environment therefore provides an alternative to solve the large-scale computational problems of whole heart modeling. In this study, using a 3D sheep atrial model as a test bed, we developed a GPU-based simulation algorithm to simulate the conduction of electrical excitation waves in the 3D atria. In the GPU algorithm, a multicellular tissue model was split into two components: one is the single cell model (ordinary differential equation and the other is the diffusion term of the monodomain model (partial differential equation. Such a decoupling enabled realization of the GPU parallel algorithm. Furthermore, several optimization strategies were proposed based on the features of the virtual heart model, which enabled a 200-fold speedup as compared to a CPU implementation. In conclusion, an optimized GPU algorithm has been developed that provides an economic and powerful platform for 3D whole heart simulations.

  19. A Hybrid Parallel Execution Model for Logic Based Requirement Specifications (Invited Paper

    Directory of Open Access Journals (Sweden)

    Jeffrey J. P. Tsai

    1999-05-01

    Full Text Available It is well known that undiscovered errors in a requirements specification is extremely expensive to be fixed when discovered in the software maintenance phase. Errors in the requirement phase can be reduced through the validation and verification of the requirements specification. Many logic-based requirements specification languages have been developed to achieve these goals. However, the execution and reasoning of a logic-based requirements specification can be very slow. An effective way to improve their performance is to execute and reason the logic-based requirements specification in parallel. In this paper, we present a hybrid model to facilitate the parallel execution of a logic-based requirements specification language. A logic-based specification is first applied by a data dependency analysis technique which can find all the mode combinations that exist within a specification clause. This mode information is used to support a novel hybrid parallel execution model, which combines both top-down and bottom-up evaluation strategies. This new execution model can find the failure in the deepest node of the search tree at the early stage of the evaluation, thus this new execution model can reduce the total number of nodes searched in the tree, the total processes needed to be generated, and the total communication channels needed in the search process. A simulator has been implemented to analyze the execution behavior of the new model. Experiments show significant improvement based on several criteria.

  20. Error Modeling and Design Optimization of Parallel Manipulators

    DEFF Research Database (Denmark)

    Wu, Guanglei

    challenges due to their highly nonlinear behaviors, thus, the parameter and performance analysis, especially the accuracy and stiness, are particularly important. Toward the requirements of robotic technology such as light weight, compactness, high accuracy and low energy consumption, utilizing optimization...... technique in the design procedure is a suitable approach to handle these complex tasks. As there is no unied design guideline for the parallel manipulators, the study described in this thesis aims to provide a systematic analysis for this type of mechanisms in the early design stage, focusing on accuracy...... analysis and design optimization. The proposed approach is illustrated with the planar and spherical parallel manipulators. The geometric design, kinematic and dynamic analysis, kinetostatic modeling and stiness analysis are also presented. Firstly, the study on the geometric architecture and kinematic...

  1. Calibration of parallel kinematics machine using generalized distance error model

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    This paper focus on the accuracy enhancement of parallel kinematics machine through kinematics calibration. In the calibration processing, well-structured identification Jacobian matrix construction and end-effector position and orientation measurement are two main difficulties. In this paper, the identification Jacobian matrix is constructed easily by numerical calculation utilizing the unit virtual velocity method. The generalized distance errors model is presented for avoiding measuring the position and orientation directly which is difficult to be measured. At last, a measurement tool is given for acquiring the data points in the calibration processing.Experimental studies confirmed the effectiveness of method. It is also shown in the paper that the proposed approach can be applied to other typed parallel manipulators.

  2. High-speed 3D imaging using two-wavelength parallel-phase-shift interferometry.

    Science.gov (United States)

    Safrani, Avner; Abdulhalim, Ibrahim

    2015-10-15

    High-speed three dimensional imaging based on two-wavelength parallel-phase-shift interferometry is presented. The technique is demonstrated using a high-resolution polarization-based Linnik interferometer operating with three high-speed phase-masked CCD cameras and two quasi-monochromatic modulated light sources. The two light sources allow for phase unwrapping the single source wrapped phase so that relatively high step profiles having heights as large as 3.7 μm can be imaged in video rate with ±2  nm accuracy and repeatability. The technique is validated using a certified very large scale integration (VLSI) step standard followed by a demonstration from the semiconductor industry showing an integrated chip with 2.75 μm height copper micro pillars at different packing densities.

  3. cellGPU: Massively parallel simulations of dynamic vertex models

    Science.gov (United States)

    Sussman, Daniel M.

    2017-10-01

    Vertex models represent confluent tissue by polygonal or polyhedral tilings of space, with the individual cells interacting via force laws that depend on both the geometry of the cells and the topology of the tessellation. This dependence on the connectivity of the cellular network introduces several complications to performing molecular-dynamics-like simulations of vertex models, and in particular makes parallelizing the simulations difficult. cellGPU addresses this difficulty and lays the foundation for massively parallelized, GPU-based simulations of these models. This article discusses its implementation for a pair of two-dimensional models, and compares the typical performance that can be expected between running cellGPU entirely on the CPU versus its performance when running on a range of commercial and server-grade graphics cards. By implementing the calculation of topological changes and forces on cells in a highly parallelizable fashion, cellGPU enables researchers to simulate time- and length-scales previously inaccessible via existing single-threaded CPU implementations. Program Files doi:http://dx.doi.org/10.17632/6j2cj29t3r.1 Licensing provisions: MIT Programming language: CUDA/C++ Nature of problem: Simulations of off-lattice "vertex models" of cells, in which the interaction forces depend on both the geometry and the topology of the cellular aggregate. Solution method: Highly parallelized GPU-accelerated dynamical simulations in which the force calculations and the topological features can be handled on either the CPU or GPU. Additional comments: The code is hosted at https://gitlab.com/dmsussman/cellGPU, with documentation additionally maintained at http://dmsussman.gitlab.io/cellGPUdocumentation

  4. Efficient Parallel Statistical Model Checking of Biochemical Networks

    Directory of Open Access Journals (Sweden)

    Paolo Ballarini

    2009-12-01

    Full Text Available We consider the problem of verifying stochastic models of biochemical networks against behavioral properties expressed in temporal logic terms. Exact probabilistic verification approaches such as, for example, CSL/PCTL model checking, are undermined by a huge computational demand which rule them out for most real case studies. Less demanding approaches, such as statistical model checking, estimate the likelihood that a property is satisfied by sampling executions out of the stochastic model. We propose a methodology for efficiently estimating the likelihood that a LTL property P holds of a stochastic model of a biochemical network. As with other statistical verification techniques, the methodology we propose uses a stochastic simulation algorithm for generating execution samples, however there are three key aspects that improve the efficiency: first, the sample generation is driven by on-the-fly verification of P which results in optimal overall simulation time. Second, the confidence interval estimation for the probability of P to hold is based on an efficient variant of the Wilson method which ensures a faster convergence. Third, the whole methodology is designed according to a parallel fashion and a prototype software tool has been implemented that performs the sampling/verification process in parallel over an HPC architecture.

  5. [Studies of ocean predictability at decade to century time scales using a global ocean general circulation model in a parallel competing environment]. Progress report

    Energy Technology Data Exchange (ETDEWEB)

    1992-03-10

    The first phase of the proposed work is largely completed on schedule. Scientists at the San Diego Supercomputer Center (SDSC) succeeded in putting a version of the Hamburg isopycnal coordinate ocean model (OPYC) onto the INTEL parallel computer. Due to the slow run speeds of the OPYC on the parallel machine, another ocean is being model used during the first part of phase 2. The model chosen is the Large Scale Geostrophic (LSG) model form the Max Planck Institute.

  6. A systemic approach for modeling biological evolution using Parallel DEVS.

    Science.gov (United States)

    Heredia, Daniel; Sanz, Victorino; Urquia, Alfonso; Sandín, Máximo

    2015-08-01

    A new model for studying the evolution of living organisms is proposed in this manuscript. The proposed model is based on a non-neodarwinian systemic approach. The model is focused on considering several controversies and open discussions about modern evolutionary biology. Additionally, a simplification of the proposed model, named EvoDEVS, has been mathematically described using the Parallel DEVS formalism and implemented as a computer program using the DEVSLib Modelica library. EvoDEVS serves as an experimental platform to study different conditions and scenarios by means of computer simulations. Two preliminary case studies are presented to illustrate the behavior of the model and validate its results. EvoDEVS is freely available at http://www.euclides.dia.uned.es. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

  7. Parallel algorithms for interactive manipulation of digital terrain models

    Science.gov (United States)

    Davis, E. W.; Mcallister, D. F.; Nagaraj, V.

    1988-01-01

    Interactive three-dimensional graphics applications, such as terrain data representation and manipulation, require extensive arithmetic processing. Massively parallel machines are attractive for this application since they offer high computational rates, and grid connected architectures provide a natural mapping for grid based terrain models. Presented here are algorithms for data movement on the massive parallel processor (MPP) in support of pan and zoom functions over large data grids. It is an extension of earlier work that demonstrated real-time performance of graphics functions on grids that were equal in size to the physical dimensions of the MPP. When the dimensions of a data grid exceed the processing array size, data is packed in the array memory. Windows of the total data grid are interactively selected for processing. Movement of packed data is needed to distribute items across the array for efficient parallel processing. Execution time for data movement was found to exceed that for arithmetic aspects of graphics functions. Performance figures are given for routines written in MPP Pascal.

  8. Ski Control Model for Parallel Turn Using Multibody System

    Science.gov (United States)

    Kawai, Shigehiro; Yamaguchi, Keishi; Sakata, Toshiyuki

    Now, it is possible to discuss qualitatively the effects of skis, skier’s ski control and slope on a ski turn by simulation. The reliability of a simulation depends on the accuracy of the models used in the simulation. In the present study, we attempt to develop a new ski control model for a “parallel turn” using a computer graphics technique. The “ski control” necessary for the simulation is the relative motion of the skier’s center of gravity to the ski and the force acting on the ski from the skier. The developed procedure is as follows. First, the skier is modeled using a multibody system consisting of body parts. Second, various postures of the skier during the “parallel turn” are drawn using a 3D-CAD (three dimensional computer aided design) system referring to the pictures videotaped on a slope. The position of the skier’s center of gravity is estimated from the produced posture. Third, the skier’s ski control is obtained by arranging these postures in a time schedule. One can watch the ski control on a TV. Last, the three types of forces acting on the ski from the skier are estimated from the gravity force and the three relative types of inertia forces acting on the skier. Consequently, one can obtain accurate ski control for the simulation of the “parallel turn”, that is, the relative motion of the skier’s center of gravity to the ski and the force acting on the ski from the skier. Furthermore, it follows that one can numerically estimate the edging angle from the ski control model.

  9. Efficient Parallel Global Optimization for High Resolution Hydrologic and Climate Impact Models

    Science.gov (United States)

    Shoemaker, C. A.; Mueller, J.; Pang, M.

    2013-12-01

    High Resolution hydrologic models are typically computationally expensive, requiring many minutes or perhaps hours for one simulation. Optimization can be used with these models for parameter estimation or for analyzing management alternatives. However Optimization of these computationally expensive simulations requires algorithms that can obtain accurate answers with relatively few simulations to avoid infeasibly long computation times. We have developed a number of efficient parallel algorithms and software codes for optimization of expensive problems with multiple local minimum. This is open source software we are distributing. It runs in Matlab and Python, and has been run on Yellowstone supercomputer. The talk will quickly discuss the characteristics of the problem (e.g. the presence of integer as well as continuous variables, the number of dimensions, the availability of parallel/grid computing, the number of simulations that can be allowed to find a solution, etc. ) that determine which algorithms are most appropriate for each type of problem. A major application of this optimization software is for parameter estimation for nonlinear hydrologic models, including contaminant transport in subsurface (e.g. for groundwater remediation or multi-phase flow for carbon sequestration), nutrient transport in watersheds, and climate models. We will present results for carbon sequestration plume monitoring (multi-phase, multi-constiuent), for groundwater remediation, and for the CLM climate model. The carbon sequestration example is based on the Frio CO2 field site and the groundwater example is for a 50,000 acre remediation site (with model requiring about 1 hour per simulation). Parallel speed-ups are excellent in most cases, and our serial and parallel algorithms tend to outperform alternative methods on complex computationally expensive simulations that have multiple global minima.

  10. PKind: A parallel k-induction based model checker

    CERN Document Server

    Kahsai, Temesghen; 10.4204/EPTCS.72.6

    2011-01-01

    PKind is a novel parallel k-induction-based model checker of invariant properties for finite- or infinite-state Lustre programs. Its architecture, which is strictly message-based, is designed to minimize synchronization delays and easily accommodate the incorporation of incremental invariant generators to enhance basic k-induction. We describe PKind's functionality and main features, and present experimental evidence that PKind significantly speeds up the verification of safety properties and, due to incremental invariant generation, also considerably increases the number of provable ones.

  11. Enhanced stability of layered phases in parallel hard spherocylinders due to addition of hard spheres

    Science.gov (United States)

    Dogic; Frenkel; Fraden

    2000-09-01

    There is increasing evidence that entropy can induce microphase separation in binary fluid mixtures interacting through hard particle potentials. One such phase consists of alternating two-dimensional liquidlike layers of rods and spheres. We study the transition from a uniform miscible state to this ordered state using computer simulations, and compare results to experiments and theory. We conclude the following: (1) There is stable entropy driven microphase separation in mixtures of parallel rods and spheres. (2) Adding spheres smaller than the rod length decreases the total volume fraction needed for the formation of a layered phase, and therefore small spheres effectively stabilize the layered phase; the opposite is true for large spheres. (3) The degree of this stabilization increases with increasing rod length.

  12. Parallel tempering and 3D spin glass models

    Science.gov (United States)

    Papakonstantinou, T.; Malakis, A.

    2014-03-01

    We review parallel tempering schemes and examine their main ingredients for accuracy and efficiency. We discuss two selection methods of temperatures and some alternatives for the exchange of replicas, including all-pair exchange methods. We measure specific heat errors and round-trip efficiency using the two-dimensional (2D) Ising model, and also test the efficiency for the ground state production in 3D spin glass models. We find that the optimization of the GS problem is highly influenced by the choice of the temperature range of the PT process. Finally, we present numerical evidence concerning the universality aspects of an anisotropic case of the 3D spin-glass model.

  13. The parallel network dynamic DEA model with interval data

    Directory of Open Access Journals (Sweden)

    S. Keikha-Javan

    2014-09-01

    Full Text Available In original DEA models, data apply precisely for measuring the relative efficiency whereas in reality, we do not always deal with precise data, also, be noted that when data are non-precision, it is expected to attain non-precision efficiency due to these data. In this article, we apply the parallel network dynamic DEA model for non-precision data in which the carry-overs among periods are assumed as desired and undesired. Then Upper and lower efficiency bounds are obtained for overall-, periodical-, divisional and periodical efficiencies the part which is computed considering the subunits of DMU under evaluation. Finally, having exerted this model on data set of branches of several banks in Iran, we compute the efficiency interval.

  14. Methods to model-check parallel systems software.

    Energy Technology Data Exchange (ETDEWEB)

    Matlin, O. S.; McCune, W.; Lusk, E.

    2003-12-15

    We report on an effort to develop methodologies for formal verification of parts of the Multi-Purpose Daemon (MPD) parallel process management system. MPD is a distributed collection of communicating processes. While the individual components of the collection execute simple algorithms, their interaction leads to unexpected errors that are difficult to uncover by conventional means. Two verification approaches are discussed here: the standard model checking approach using the software model checker SPIN and the nonstandard use of a general-purpose first-order resolution-style theorem prover OTTER to conduct the traditional state space exploration. We compare modeling methodology and analyze performance and scalability of the two methods with respect to verification of MPD.

  15. An improved design of virtual output impedance loop for droop-controlled parallel three-phase Voltage Source Inverters

    DEFF Research Database (Denmark)

    Wang, Xiongfei; Blaabjerg, Frede; Chen, Zhe

    2012-01-01

    The virtual output impedance loop is known as an effective way to enhance the load sharing stability and quality of droop-controlled parallel inverters. This paper proposes an improved design of virtual output impedance loop for parallel three-phase voltage source inverters. In the approach, a vi...

  16. High-Performance Control of Paralleled Three-Phase Inverters for Residential Microgrid Architectures Based on Online Uninterruptable Power Systems

    DEFF Research Database (Denmark)

    Zhang, Chi; Guerrero, Josep M.; Vasquez, Juan Carlos

    2015-01-01

    In this paper, a control strategy for the parallel operation of three-phase inverters forming an online uninterruptible power system (UPS) is presented. The UPS system consists of a cluster of paralleled inverters with LC filters directly connected to an AC critical bus and an AC/DC forming a DC ...

  17. Energy consumption model over parallel programs implemented on multicore architectures

    Directory of Open Access Journals (Sweden)

    Ricardo Isidro-Ramirez

    2015-06-01

    Full Text Available In High Performance Computing, energy consump-tion is becoming an important aspect to consider. Due to the high costs that represent energy production in all countries it holds an important role and it seek to find ways to save energy. It is reflected in some efforts to reduce the energy requirements of hardware components and applications. Some options have been appearing in order to scale down energy use and, con-sequently, scale up energy efficiency. One of these strategies is the multithread programming paradigm, whose purpose is to produce parallel programs able to use the full amount of computing resources available in a microprocessor. That energy saving strategy focuses on efficient use of multicore processors that are found in various computing devices, like mobile devices. Actually, as a growing trend, multicore processors are found as part of various specific purpose computers since 2003, from High Performance Computing servers to mobile devices. However, it is not clear how multiprogramming affects energy efficiency. This paper presents an analysis of different types of multicore-based architectures used in computing, and then a valid model is presented. Based on Amdahl’s Law, a model that considers different scenarios of energy use in multicore architectures it is proposed. Some interesting results were found from experiments with the developed algorithm, that it was execute of a parallel and sequential way. A lower limit of energy consumption was found in a type of multicore architecture and this behavior was observed experimentally.

  18. Poly(ethylene glycol)-supported Liquid-phase Parallel Synthesis of Di(aryloxyacetyl)thiosemicarbazides

    Institute of Scientific and Technical Information of China (English)

    Xi Cun WANG; Jun Ke WANG; Zheng LI

    2004-01-01

    An efficient poly(ethylene glycol) (PEG)-supported liquid-phase parallel approach to di(aryloxyacetyl)thiosemicarbazides is described. PEG-bound phenol reacted with chloroacetic acid to afford PEG-bound phenyloxyacetic acid, which was readily converted into corresponding phenyloxyacetyl chloride. Subsequent nucleophilic substitution with ammonium thiocyanate followed by addition of aryloxyacetic acid hydrazides gave PEG-bound di(aryloxyacetyl)thiosemi- carbazides, which were easily cleaved to give the resulting library of 1-aryloxyacetyl-4-(4'- methoxylcarbonylphenyloxyacetyl)thiosemicarbazides in good to high yield and high purity.

  19. Parallel multiscale modeling of biopolymer dynamics with hydrodynamic correlations

    CERN Document Server

    Fyta, Maria; Kaxiras, Efthimios; Melchionna, Simone; Bernaschi, Massimo; Succi, Sauro

    2007-01-01

    We employ a multiscale approach to model the translocation of biopolymers through nanometer size pores. Our computational scheme combines microscopic Molecular Dynamics (MD) with a mesoscopic Lattice Boltzmann (LB) method for the solvent dynamics, explicitly taking into account the interactions of the molecule with the surrounding fluid. We describe an efficient parallel implementation of the method which exhibits excellent scalability on the Blue Gene platform. We investigate both dynamical and statistical aspects of the translocation process by simulating polymers of various initial configurations and lengths. For a representative molecule size, we explore the effects of important parameters that enter in the simulation, paying particular attention to the strength of the molecule-solvent coupling and of the external electric field which drives the translocation process. Finally, we explore the connection between the generic polymers modeled in the simulation and DNA, for which interesting recent experimenta...

  20. Applying the Extended Parallel Process Model to workplace safety messages.

    Science.gov (United States)

    Basil, Michael; Basil, Debra; Deshpande, Sameer; Lavack, Anne M

    2013-01-01

    The extended parallel process model (EPPM) proposes fear appeals are most effective when they combine threat and efficacy. Three studies conducted in the workplace safety context examine the use of various EPPM factors and their effects, especially multiplicative effects. Study 1 was a content analysis examining the use of EPPM factors in actual workplace safety messages. Study 2 experimentally tested these messages with 212 construction trainees. Study 3 replicated this experiment with 1,802 men across four English-speaking countries-Australia, Canada, the United Kingdom, and the United States. The results of these three studies (1) demonstrate the inconsistent use of EPPM components in real-world work safety communications, (2) support the necessity of self-efficacy for the effective use of threat, (3) show a multiplicative effect where communication effectiveness is maximized when all model components are present (severity, susceptibility, and efficacy), and (4) validate these findings with gory appeals across four English-speaking countries.

  1. Microwave photonic frequency down-conversion link based on intensity and phase paralleled modulation

    Science.gov (United States)

    Li, Jingnan; Wang, Yunxin; Wang, Dayong; Du, Haozheng; Zhou, Tao; Zhong, Xin; Yang, Dengcai; Li, Hongli

    2016-01-01

    A photonic microwave down-conversion approach is proposed and experimentally demonstrated based on a Mach-Zehnder modulator paralleled with a phase modulator. The incident radio frequency signal and the local oscillator signal are feed to the MZM and PM, respectively, and these two modulated optical signals interfere in the coupler. The useless higher-order sidebands are removed by a tunable optical band-pass filter. The principle of microwave frequency down-conversion is analyzed theoretically, the MZM and PM paralleled frequency down-conversion system is built. Then the performance of system is tested, and the experimental results show that the spurious-free dynamic range achieves 104.8 dB:Hz2/3. Compared to the conventional MZM-MZM cascaded system, the SFDR has been improved by 16 dB. The MZM and PM paralleled frequency down-conversion system can balance the intensity of the two coherent beams easily, and only single DC bias is needed. The proposed method possesses simple structure and high dynamic range.

  2. Parallel Application Development Using Architecture View Driven Model Transformations

    NARCIS (Netherlands)

    Arkin, E.; Tekinerdogan, B.

    2015-01-01

    o realize the increased need for computing performance the current trend is towards applying parallel computing in which the tasks are run in parallel on multiple nodes. On its turn we can observe the rapid increase of the scale of parallel computing platforms. This situation has led to a complexity

  3. Pilot-aided carrier phase recovery for M-QAM using superscalar parallelization based PLL.

    Science.gov (United States)

    Zhuge, Qunbi; Morsy-Osman, Mohamed; Xu, Xian; Mousa-Pasandi, Mohammad E; Chagnon, Mathieu; El-Sahn, Ziad A; Plant, David V

    2012-08-13

    In this paper, we present a carrier phase recovery (CPR) algorithm using a modified superscalar parallelization based phase locked loop (M-SSP-PLL) combined with a maximum-likelihood (ML) phase estimation. Compared to the original SSP-PLL, M-SSP-PLL + ML reduces the required buffer size using a novel superscalar structure. In addition, by removing the differential coding/decoding and employing ML phase recovery it also improves the performance. In simulation, we show that the laser linewidth tolerance of M-SSP-PLL + ML is comparable to blind phase search (BPS) algorithm, which is known to be one of the best CPR algorithms in terms of performance for arbitrary QAM formats. In 28 Gbaud QPSK (112 Gb/s) and 16-QAM (224 Gb/s), and 7 Gbaud 64-QAM (84 Gb/s) experiments, it is also demonstrated that M-SSP-PLL + ML can increase the transmission distance by at least 12% compared to BPS for each of them. Finally, the computational complexity is discussed and a significant reduction is shown for our algorithm with respect to BPS.

  4. Tarmo: A Framework for Parallelized Bounded Model Checking

    CERN Document Server

    Wieringa, Siert; Heljanko, Keijo; 10.4204/EPTCS.14.5

    2009-01-01

    This paper investigates approaches to parallelizing Bounded Model Checking (BMC) for shared memory environments as well as for clusters of workstations. We present a generic framework for parallelized BMC named Tarmo. Our framework can be used with any incremental SAT encoding for BMC but for the results in this paper we use only the current state-of-the-art encoding for full PLTL. Using this encoding allows us to check both safety and liveness properties, contrary to an earlier work on distributing BMC that is limited to safety properties only. Despite our focus on BMC after it has been translated to SAT, existing distributed SAT solvers are not well suited for our application. This is because solving a BMC problem is not solving a set of independent SAT instances but rather involves solving multiple related SAT instances, encoded incrementally, where the satisfiability of each instance corresponds to the existence of a counterexample of a specific length. Our framework includes a generic architecture for a ...

  5. Optical A/D Quantizer Scheme Based on Parallel Phase Modulators

    Institute of Scientific and Technical Information of China (English)

    LI Zheng

    2005-01-01

    A high-speed and high-resolution optical A/D quantizer is proposed. Its architecture is discussed. Bit circuits are built by using the phase modulators in parallel. Based on the different character of the half-wave voltage for every phase modulator and the polarized bias design of incident light, the RF input signal is coded and transmitted in the form of optical digital signal. According to the principle of the architecture, the high-resolution quantizers with 8-bit and 12-bit, et al. are built, which operate at 100 GS/s.Their quantization noise is invariable almost with bit circuits increasing. The simulation result of 4-bit A/D quantizer is also given.

  6. Parallel tools GUI framework-DOE SBIR phase I final technical report

    Energy Technology Data Exchange (ETDEWEB)

    Galarowicz, James [Argo Navis Technologies LLC., Annapolis, MD (United States)

    2013-12-05

    Many parallel performance, profiling, and debugging tools require a graphical way of displaying the very large datasets typically gathered from high performance computing (HPC) applications. Most tool projects create their graphical user interfaces (GUI) from scratch, many times spending their project resources on simply redeveloping commonly used infrastructure. Our goal was to create a multiplatform GUI framework, based on Nokia/Digia’s popular Qt libraries, which will specifically address the needs of these parallel tools. The Parallel Tools GUI Framework (PTGF) uses a plugin architecture facilitating rapid GUI development and reduced development costs for new and existing tool projects by allowing the reuse of many common GUI elements, called “widgets.” Widgets created include, 2D data visualizations, a source code viewer with syntax highlighting, and integrated help and welcome screens. Application programming interface (API) design was focused on minimizing the time to getting a functional tool working. Having a standard, unified, and userfriendly interface which operates on multiple platforms will benefit HPC application developers by reducing training time and allowing users to move between tools rapidly during a single session. However, Argo Navis Technologies LLC will not be submitting a DOE SBIR Phase II proposal and commercialization plan for the PTGF project. Our preliminary estimates for gross income over the next several years was based upon initial customer interest and income generated by similar projects. Unfortunately, as we further assessed the market during Phase I, we grew to realize that there was not enough demand to warrant such a large investment. While we do find that the project is worth our continued investment of time and money, we do not think it worthy of the DOE's investment at this time. We are grateful that the DOE has afforded us the opportunity to make this assessment, and come to this conclusion.

  7. Parallel 3-d simulations for porous media models in soil mechanics

    Science.gov (United States)

    Wieners, C.; Ammann, M.; Diebels, S.; Ehlers, W.

    Numerical simulations in 3-d for porous media models in soil mechanics are a difficult task for the engineering modelling as well as for the numerical realization. Here, we present a general numerical scheme for the simulation of two-phase models in combination with an material model via the stress response with a specialized parallel saddle point solver. Therefore, we give a brief introduction into the theoretical background of the Theory of Porous Media and constitute a two-phase model consisting of a porous solid skeleton saturated by a viscous pore-fluid. The material behaviour of the skeleton is assumed to be elasto-viscoplastic. The governing equations are transfered to a weak formulation suitable for the application of the finite element method. Introducing an formulation in terms of the stress response, we define a clear interface between the assembling process and the parallel solver modules. We demonstrate the efficiency of this approach by challenging numerical experiments realized on the Linux Cluster in Chemnitz.

  8. Parallel programming practical aspects, models and current limitations

    CERN Document Server

    Tarkov, Mikhail S

    2014-01-01

    Parallel programming is designed for the use of parallel computer systems for solving time-consuming problems that cannot be solved on a sequential computer in a reasonable time. These problems can be divided into two classes: 1. Processing large data arrays (including processing images and signals in real time)2. Simulation of complex physical processes and chemical reactions For each of these classes, prospective methods are designed for solving problems. For data processing, one of the most promising technologies is the use of artificial neural networks. Particles-in-cell method and cellular automata are very useful for simulation. Problems of scalability of parallel algorithms and the transfer of existing parallel programs to future parallel computers are very acute now. An important task is to optimize the use of the equipment (including the CPU cache) of parallel computers. Along with parallelizing information processing, it is essential to ensure the processing reliability by the relevant organization ...

  9. Dynamic modeling of Tampa Bay urban development using parallel computing

    Science.gov (United States)

    Xian, G.; Crane, M.; Steinwand, D.

    2005-01-01

    Urban land use and land cover has changed significantly in the environs of Tampa Bay, Florida, over the past 50 years. Extensive urbanization has created substantial change to the region's landscape and ecosystems. This paper uses a dynamic urban-growth model, SLEUTH, which applies six geospatial data themes (slope, land use, exclusion, urban extent, transportation, hillside), to study the process of urbanization and associated land use and land cover change in the Tampa Bay area. To reduce processing time and complete the modeling process within an acceptable period, the model is recoded and ported to a Beowulf cluster. The parallel-processing computer system accomplishes the massive amount of computation the modeling simulation requires. SLEUTH calibration process for the Tampa Bay urban growth simulation spends only 10 h CPU time. The model predicts future land use/cover change trends for Tampa Bay from 1992 to 2025. Urban extent is predicted to double in the Tampa Bay watershed between 1992 and 2025. Results show an upward trend of urbanization at the expense of a decline of 58% and 80% in agriculture and forested lands, respectively. ?? 2005 Elsevier Ltd. All rights reserved.

  10. "Let's Move" campaign: applying the extended parallel process model.

    Science.gov (United States)

    Batchelder, Alicia; Matusitz, Jonathan

    2014-01-01

    This article examines Michelle Obama's health campaign, "Let's Move," through the lens of the extended parallel process model (EPPM). "Let's Move" aims to reduce the childhood obesity epidemic in the United States. Developed by Kim Witte, EPPM rests on the premise that people's attitudes can be changed when fear is exploited as a factor of persuasion. Fear appeals work best (a) when a person feels a concern about the issue or situation, and (b) when he or she believes to have the capability of dealing with that issue or situation. Overall, the analysis found that "Let's Move" is based on past health campaigns that have been successful. An important element of the campaign is the use of fear appeals (as it is postulated by EPPM). For example, part of the campaign's strategies is to explain the severity of the diseases associated with obesity. By looking at the steps of EPPM, readers can also understand the strengths and weaknesses of "Let's Move."

  11. Parallel imaging enhanced MR colonography using a phantom model.

    LENUS (Irish Health Repository)

    Morrin, Martina M

    2008-09-01

    To compare various Array Spatial and Sensitivity Encoding Technique (ASSET)-enhanced T2W SSFSE (single shot fast spin echo) and T1-weighted (T1W) 3D SPGR (spoiled gradient recalled echo) sequences for polyp detection and image quality at MR colonography (MRC) in a phantom model. Limitations of MRC using standard 3D SPGR T1W imaging include the long breath-hold required to cover the entire colon within one acquisition and the relatively low spatial resolution due to the long acquisition time. Parallel imaging using ASSET-enhanced T2W SSFSE and 3D T1W SPGR imaging results in much shorter imaging times, which allows for increased spatial resolution.

  12. Phase locking of a seven-channel continuous wave fibre laser system by a stochastic parallel gradient algorithm

    Energy Technology Data Exchange (ETDEWEB)

    Volkov, M V; Garanin, S G; Dolgopolov, Yu V; Kopalkin, A V; Kulikov, S M; Sinyavin, D N; Starikov, F A; Sukharev, S A; Tyutin, S V; Khokhlov, S V; Chaparin, D A [Russian Federal Nuclear Center ' All-Russian Research Institute of Experimental Physics' , Sarov, Nizhnii Novgorod region (Russian Federation)

    2014-11-30

    A seven-channel fibre laser system operated by the master oscillator – multichannel power amplifier scheme is the phase locked using a stochastic parallel gradient algorithm. The phase modulators on lithium niobate crystals are controlled by a multichannel electronic unit with the microcontroller processing signals in real time. The dynamic phase locking of the laser system with the bandwidth of 14 kHz is demonstrated, the time of phasing is 3 – 4 ms. (fibre and integrated-optical structures)

  13. Parallel Semi-Implicit Spectral Element Atmospheric Model

    Science.gov (United States)

    Fournier, A.; Thomas, S.; Loft, R.

    2001-05-01

    The shallow-water equations (SWE) have long been used to test atmospheric-modeling numerical methods. The SWE contain essential wave-propagation and nonlinear effects of more complete models. We present a semi-implicit (SI) improvement of the Spectral Element Atmospheric Model to solve the SWE (SEAM, Taylor et al. 1997, Fournier et al. 2000, Thomas & Loft 2000). SE methods are h-p finite element methods combining the geometric flexibility of size-h finite elements with the accuracy of degree-p spectral methods. Our work suggests that exceptional parallel-computation performance is achievable by a General-Circulation-Model (GCM) dynamical core, even at modest climate-simulation resolutions (>1o). The code derivation involves weak variational formulation of the SWE, Gauss(-Lobatto) quadrature over the collocation points, and Legendre cardinal interpolators. Appropriate weak variation yields a symmetric positive-definite Helmholtz operator. To meet the Ladyzhenskaya-Babuska-Brezzi inf-sup condition and avoid spurious modes, we use a staggered grid. The SI scheme combines leapfrog and Crank-Nicholson schemes for the nonlinear and linear terms respectively. The localization of operations to elements ideally fits the method to cache-based microprocessor computer architectures --derivatives are computed as collections of small (8x8), naturally cache-blocked matrix-vector products. SEAM also has desirable boundary-exchange communication, like finite-difference models. Timings on on the IBM SP and Compaq ES40 supercomputers indicate that the SI code (20-min timestep) requires 1/3 the CPU time of the explicit code (2-min timestep) for T42 resolutions. Both codes scale nearly linearly out to 400 processors. We achieved single-processor performance up to 30% of peak for both codes on the 375-MHz IBM Power-3 processors. Fast computation and linear scaling lead to a useful climate-simulation dycore only if enough model time is computed per unit wall-clock time. An efficient SI

  14. Multiphysics & Parallel Kinematics Modeling of a 3DOF MEMS Mirror

    Directory of Open Access Journals (Sweden)

    Mamat N.

    2015-01-01

    Full Text Available This paper presents a modeling for a 3DoF electrothermal actuated micro-electro-mechanical (MEMS mirror used to achieve scanning for optical coherence tomography (OCT imaging. The device is integrated into an OCT endoscopic probe, it is desired that the optical scanner have small footprint for minimum invasiveness, large and flat optical aperture for large scanning range, low driving voltage and low power consumption for safety reason. With a footprint of 2mm×2mm, the MEMS scanner which is also called as Tip-Tilt-Piston micro-mirror, can perform two rotations around x and y-axis and a vertical translation along z-axis. This work develops a complete model and experimental characterization. The modeling is divided into two parts: multiphysics characterization of the actuators and parallel kinematics studies of the overall system. With proper experimental procedures, we are able to validate the model via Visual Servoing Platform (ViSP. The results give a detailed overview on the performance of the mirror platform while varying the applied voltage at a stable working frequency. The paper also presents a discussion on the MEMS control system based on several scanning trajectories.

  15. Parallel processing for efficient 3D slope stability modelling

    Science.gov (United States)

    Marchesini, Ivan; Mergili, Martin; Alvioli, Massimiliano; Metz, Markus; Schneider-Muntau, Barbara; Rossi, Mauro; Guzzetti, Fausto

    2014-05-01

    We test the performance of the GIS-based, three-dimensional slope stability model r.slope.stability. The model was developed as a C- and python-based raster module of the GRASS GIS software. It considers the three-dimensional geometry of the sliding surface, adopting a modification of the model proposed by Hovland (1977), and revised and extended by Xie and co-workers (2006). Given a terrain elevation map and a set of relevant thematic layers, the model evaluates the stability of slopes for a large number of randomly selected potential slip surfaces, ellipsoidal or truncated in shape. Any single raster cell may be intersected by multiple sliding surfaces, each associated with a value of the factor of safety, FS. For each pixel, the minimum value of FS and the depth of the associated slip surface are stored. This information is used to obtain a spatial overview of the potentially unstable slopes in the study area. We test the model in the Collazzone area, Umbria, central Italy, an area known to be susceptible to landslides of different type and size. Availability of a comprehensive and detailed landslide inventory map allowed for a critical evaluation of the model results. The r.slope.stability code automatically splits the study area into a defined number of tiles, with proper overlap in order to provide the same statistical significance for the entire study area. The tiles are then processed in parallel by a given number of processors, exploiting a multi-purpose computing environment at CNR IRPI, Perugia. The map of the FS is obtained collecting the individual results, taking the minimum values on the overlapping cells. This procedure significantly reduces the processing time. We show how the gain in terms of processing time depends on the tile dimensions and on the number of cores.

  16. Tarmo: A Framework for Parallelized Bounded Model Checking

    Directory of Open Access Journals (Sweden)

    Siert Wieringa

    2009-12-01

    Full Text Available This paper investigates approaches to parallelizing Bounded Model Checking (BMC for shared memory environments as well as for clusters of workstations. We present a generic framework for parallelized BMC named Tarmo. Our framework can be used with any incremental SAT encoding for BMC but for the results in this paper we use only the current state-of-the-art encoding for full PLTL. Using this encoding allows us to check both safety and liveness properties, contrary to an earlier work on distributing BMC that is limited to safety properties only. Despite our focus on BMC after it has been translated to SAT, existing distributed SAT solvers are not well suited for our application. This is because solving a BMC problem is not solving a set of independent SAT instances but rather involves solving multiple related SAT instances, encoded incrementally, where the satisfiability of each instance corresponds to the existence of a counterexample of a specific length. Our framework includes a generic architecture for a shared clause database that allows easy clause sharing between SAT solver threads solving various such instances. We present extensive experimental results obtained with multiple variants of our Tarmo implementation. Our shared memory variants have a significantly better performance than conventional single threaded approaches, which is a result that many users can benefit from as multi-core and multi-processor technology is widely available. Furthermore we demonstrate that our framework can be deployed in a typical cluster of workstations, where several multi-core machines are connected by a network.

  17. A time-variant analysis of the 1/f^(2) phase noise in CMOS parallel LC-Tank quadrature oscillators

    DEFF Research Database (Denmark)

    Andreani, Pietro

    2006-01-01

    This paper presents a study of 1/f2 phase noise in quadrature oscillators built by connecting two differential LC-tank oscillators in a parallel fashion. The analysis clearly demonstrates the necessity of adopting a time-variant theory of phase noise, where a more simplistic, time......-invariant approach fails to explain numerical simulation results even at the qualitative level. Two topologies of 5-GHz parallel quadrature oscillators are considered, and compact but nevertheless highly general, closed-form formulas are derived for the phase noise caused by the losses in the LC...

  18. Known-plaintext attack on the double phase encoding and its implementation with parallel hardware

    Science.gov (United States)

    Wei, Hengzheng; Peng, Xiang; Liu, Haitao; Feng, Songlin; Gao, Bruce Z.

    2008-03-01

    A known-plaintext attack on the double phase encryption scheme implemented with parallel hardware is presented. The double random phase encoding (DRPE) is one of the most representative optical cryptosystems developed in mid of 90's and derives quite a few variants since then. Although the DRPE encryption system has a strong power resisting to a brute-force attack, the inherent architecture of DRPE leaves a hidden trouble due to its linearity nature. Recently the real security strength of this opto-cryptosystem has been doubted and analyzed from the cryptanalysis point of view. In this presentation, we demonstrate that the optical cryptosystems based on DRPE architecture are vulnerable to known-plain text attack. With this attack the two encryption keys in the DRPE can be accessed with the help of the phase retrieval technique. In our approach, we adopt hybrid input-output algorithm (HIO) to recover the random phase key in the object domain and then infer the key in frequency domain. Only a plaintext-ciphertext pair is sufficient to create vulnerability. Moreover this attack does not need to select particular plaintext. The phase retrieval technique based on HIO is an iterative process performing Fourier transforms, so it fits very much into the hardware implementation of the digital signal processor (DSP). We make use of the high performance DSP to accomplish the known-plaintext attack. Compared with the software implementation, the speed of the hardware implementation is much fast. The performance of this DSP-based cryptanalysis system is also evaluated.

  19. Modeling of phased array transducers.

    Science.gov (United States)

    Ahmad, Rais; Kundu, Tribikram; Placko, Dominique

    2005-04-01

    Phased array transducers are multi-element transducers, where different elements are activated with different time delays. The advantage of these transducers is that no mechanical movement of the transducer is needed to scan an object. Focusing and beam steering is obtained simply by adjusting the time delay. In this paper the DPSM (distributed point source method) is used to model the ultrasonic field generated by a phased array transducer and to study the interaction effect when two phased array transducers are placed in a homogeneous fluid. Earlier investigations modeled the acoustic field for conventional transducers where all transducer points are excited simultaneously. In this research, combining the concepts of delayed firing and the DPSM, the phased array transducers are modeled semi-analytically. In addition to the single transducer modeling the ultrasonic fields from two phased array transducers placed face to face in a fluid medium is also modeled to study the interaction effect. The importance of considering the interaction effect in multiple transducer modeling is discussed, pointing out that neighboring transducers not only act as ultrasonic wave generators but also as scatterers.

  20. Parallelized CCHE2D flow model with CUDA Fortran on Graphics Process Units

    Science.gov (United States)

    This paper presents the CCHE2D implicit flow model parallelized using CUDA Fortran programming technique on Graphics Processing Units (GPUs). A parallelized implicit Alternating Direction Implicit (ADI) solver using Parallel Cyclic Reduction (PCR) algorithm on GPU is developed and tested. This solve...

  1. Instantaneous high-resolution focus tracking and a vibrometery system using parallel phase shift interferometry

    Science.gov (United States)

    Ney, Michael; Safrani, Avner; Abdulhlaim, Ibrahim

    2016-09-01

    High resolution fast focus tracking and vibrometery system based on parallel phase shift polarization interferometry using three detectors is presented. The basic design and algorithm are described, followed by an experimental demonstration showing sub nm resolution of different controlled motion profiles instantaneously monitored at a feedback rate of 100 kHz. The fact that the method does not rely on active optical components, potentially allows extremely high vibration rates to be measured; limited only by the detector bandwidth and sampling rate. In addition, the relatively simple design relies only on standard optical equipment, combined with the simple algorithm, makes the task of setting up a high performance vibrometry system cheap and readily available.

  2. Parallel optical sorting of biological cells using the generalized phase contrast method

    DEFF Research Database (Denmark)

    Rindorf, Lars; Bu, Minqiang; Glückstad, Jesper

    2014-01-01

    of biological cells in microfluidic systems exclusively using light. We demonstrate an optical cell sorter that uses simultaneous manipulation by multiple laser beams using the Generalized Phase Contrast method (GPC). The basic principle in an optical sorter is that the radiation force of the optical beam can...... push the biological cell from one microfluidic sheath flow to another. By incorporating a spatial light modulator the manipulation can be made parallel with multiple laser beams. We claim advantages over the serial optical sorters with only a single laser beam that has been demonstrated by others.......Optical forces are used to fixate biological cells with optical tweezers where numerous biological parameters and phenomena can be studied. Optical beams carry a small momentum which generates a weak optical force, but on a cellular level this force is strong enough to allow for manipulation...

  3. Parallel family trees for transfer matrices in the Potts model

    CERN Document Server

    Navarro, Cristobal A; Kahler, Nancy Hitschfeld; Navarro, Gonzalo

    2013-01-01

    The computational cost of transfer matrix methods for the Potts model is directly related to the problem of \\textit{into how many ways can two adjacent blocks of a lattice be connected}. Answering this question leads to the generation of a combinatorial set of lattice configurations. This set defines the \\textit{configuration space} of the problem, and the smaller it is, the faster the transfer matrix method can be. The configuration space of generic transfer matrix methods for strip lattices in the Potts model is in the order of the Catalan numbers, leading to an asymptotic cost of $O(4^m)$ with $m$ being the width of the strip. Transfer matrix methods with a smaller configuration space indeed exist but they make assumptions on the temperature, number of spin states, or restrict the topology of the lattice in order to work. In this paper we propose a general and parallel transfer matrix method, based on family trees, that uses a sub-Catalan configuration space of size $O(3^m)$. The improvement is achieved by...

  4. Time efficient 3-D electromagnetic modeling on massively parallel computers

    Energy Technology Data Exchange (ETDEWEB)

    Alumbaugh, D.L.; Newman, G.A.

    1995-08-01

    A numerical modeling algorithm has been developed to simulate the electromagnetic response of a three dimensional earth to a dipole source for frequencies ranging from 100 to 100MHz. The numerical problem is formulated in terms of a frequency domain--modified vector Helmholtz equation for the scattered electric fields. The resulting differential equation is approximated using a staggered finite difference grid which results in a linear system of equations for which the matrix is sparse and complex symmetric. The system of equations is solved using a preconditioned quasi-minimum-residual method. Dirichlet boundary conditions are employed at the edges of the mesh by setting the tangential electric fields equal to zero. At frequencies less than 1MHz, normal grid stretching is employed to mitigate unwanted reflections off the grid boundaries. For frequencies greater than this, absorbing boundary conditions must be employed by making the stretching parameters of the modified vector Helmholtz equation complex which introduces loss at the boundaries. To allow for faster calculation of realistic models, the original serial version of the code has been modified to run on a massively parallel architecture. This modification involves three distinct tasks; (1) mapping the finite difference stencil to a processor stencil which allows for the necessary information to be exchanged between processors that contain adjacent nodes in the model, (2) determining the most efficient method to input the model which is accomplished by dividing the input into ``global`` and ``local`` data and then reading the two sets in differently, and (3) deciding how to output the data which is an inherently nonparallel process.

  5. The Rochester Checkers Player: Multi-Model Parallel Programming for Animate Vision

    Science.gov (United States)

    1991-06-01

    parallel programming is likely to serve for all tasks, however. Early vision algorithms are intensely data parallel, often utilizing fine-grain parallel computations that share an image, while cognition algorithms decompose naturally by function, often consisting of loosely-coupled, coarse-grain parallel units. A typical animate vision application will likely consist of many tasks, each of which may require a different parallel programming model, and all of which must cooperate to achieve the desired behavior. These multi-model programs require an

  6. A novel concept of electrical drives based on two five-phases PMSM connected in parallel and supplied by a single inverter

    Science.gov (United States)

    Tounsi, K.; Djahbar, A.; Zegaoui, A.; Boutoubat, M.; Bokhtache, A. Aissa; Allouache, H.; Aillerie, M.

    2017-02-01

    In this paper, the vector control of a parallel-connected two five-phase permanent magnet synchronous machines (PMSMs) drive supplied by a single current-controlled voltage source inverter is presented. This system consists of a two five-phase PMSMs; the stators windings of both machines are connected in parallel in appropriate manner by using of the phase transposition property, which allows a decoupled control of the two machines. Based on the mathematical model of the multi-machine drive system, the decoupled dynamic of each machine from the group is obtained using the vector control algorithm. The independent control is ensured by controlling the stator currents and the speed of each machine under vector control consideration. Selected simulation results are presented to validate the effectiveness of the proposed control method under various dynamic operating conditions.

  7. Selecting Simulation Models when Predicting Parallel Program Behaviour

    OpenAIRE

    Broberg, Magnus; Lundberg, Lars; Grahn, Håkan

    2002-01-01

    The use of multiprocessors is an important way to increase the performance of a supercom-puting program. This means that the program has to be parallelized to make use of the multi-ple processors. The parallelization is unfortunately not an easy task. Development tools supporting parallel programs are important. Further, it is the customer that decides the number of processors in the target machine, and as a result the developer has to make sure that the pro-gram runs efficiently on any numbe...

  8. Improved modelling of a parallel plate active magnetic regenerator

    DEFF Research Database (Denmark)

    Engelbrecht, Kurt; Tušek, J.; Nielsen, Kaspar Kirstein;

    2013-01-01

    flow maldistribution in the regenerator. This paper studies the effects of these loss mechanisms and compares theoretical results with experimental results obtained on an experimental AMR device. Three parallel plate regenerators were tested, each having different demagnetizing field characteristics...

  9. Empirical valence bond models for reactive potential energy surfaces: a parallel multilevel genetic program approach.

    Science.gov (United States)

    Bellucci, Michael A; Coker, David F

    2011-07-28

    We describe a new method for constructing empirical valence bond potential energy surfaces using a parallel multilevel genetic program (PMLGP). Genetic programs can be used to perform an efficient search through function space and parameter space to find the best functions and sets of parameters that fit energies obtained by ab initio electronic structure calculations. Building on the traditional genetic program approach, the PMLGP utilizes a hierarchy of genetic programming on two different levels. The lower level genetic programs are used to optimize coevolving populations in parallel while the higher level genetic program (HLGP) is used to optimize the genetic operator probabilities of the lower level genetic programs. The HLGP allows the algorithm to dynamically learn the mutation or combination of mutations that most effectively increase the fitness of the populations, causing a significant increase in the algorithm's accuracy and efficiency. The algorithm's accuracy and efficiency is tested against a standard parallel genetic program with a variety of one-dimensional test cases. Subsequently, the PMLGP is utilized to obtain an accurate empirical valence bond model for proton transfer in 3-hydroxy-gamma-pyrone in gas phase and protic solvent.

  10. Carrier Phase Error Detection Method and Synchronization Control of Parallel-Connected PWM Inverters without Signal Line

    Science.gov (United States)

    Kohara, Tatsuya; Noguchi, Toshihiko; Kondo, Seiji

    In recent years, parallel-operation of inverters is employed to increase reliability and capacity in an uninterruptible power supply (UPS) system. A phase error in PWM carrier-signals of each inverter causes high frequency loop current between inverters. Therefore, the PWM carrier-signal of each inverter should be adjusted in phase. This paper proposes a detection method of phase error in PWM carrier-signal and its application to synchronization control for parallel-connected inverters. A simple definite-integral circuit achieves the detection of carrier phase error from high frequency loop current using no signal line between inverters. The detected carrier phase error is applied to synchronize the PWM carrier-signal through a PI-compensator, and then the high frequency loop current can be suppressed. Several experimental test-results show the validity of the proposed detection method and synchronization control.

  11. Parallell Implementations of Modeling Dynamical Systems by Using System of Ordinary Differential Equations

    Institute of Scientific and Technical Information of China (English)

    Cao Hong-qing; Kang Li-shan; Yu Jing-xian

    2003-01-01

    First, an asynchronous distributed parallel evolutionary modeling algorithm (PEMA) for building the model of system of ordinary differential equations for dynamical systems is proposed in this paper. Then a series of parallel experiments have been conducted to systematically test the influence of some important parallel control parameters on the performance of the algorithm. A lot of experimental results are obtained and we make some analysis and explanations to them.

  12. Coupled Models and Parallel Simulations for Three-Dimensional Full-Stokes Ice Sheet Modeling

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Huai; Ju, Lili

    2011-01-01

    A three-dimensional full-Stokes computational model is considered for determining the dynamics, temperature, and thickness of ice sheets. The governing thermomechanical equations consist of the three-dimensional full-Stokes system with nonlinear rheology for the momentum, an advective-diffusion energy equation for temperature evolution, and a mass conservation equation for icethickness changes. Here, we discuss the variable resolution meshes, the finite element discretizations, and the parallel algorithms employed by the model components. The solvers are integrated through a well-designed coupler for the exchange of parametric data between components. The discretization utilizes high-quality, variable-resolution centroidal Voronoi Delaunay triangulation meshing and existing parallel solvers. We demonstrate the gridding technology, discretization schemes, and the efficiency and scalability of the parallel solvers through computational experiments using both simplified geometries arising from benchmark test problems and a realistic Greenland ice sheet geometry.

  13. Modeling the distinct phases of skill acquisition.

    Science.gov (United States)

    Tenison, Caitlin; Anderson, John R

    2016-05-01

    A focus of early mathematics education is to build fluency through practice. Several models of skill acquisition have sought to explain the increase in fluency because of practice by modeling both the learning mechanisms driving this speedup and the changes in cognitive processes involved in executing the skill (such as transitioning from calculation to retrieval). In the current study, we use hidden Markov modeling to identify transitions in the learning process. This method accounts for the gradual speedup in problem solving and also uncovers abrupt changes in reaction time, which reflect changes in the cognitive processes that participants are using to solve math problems. We find that as participants practice solving math problems they transition through 3 distinct learning states. Each learning state shows some speedup with practice, but the major speedups are produced by transitions between learning states. In examining and comparing the behavioral and neurological profiles of each of these states, we find parallels with the 3 phases of skill acquisition proposed by Fitts and Posner (1967): a cognitive, an associative, and an autonomous phase. (PsycINFO Database Record

  14. Hybrid parallel execution model for logic-based specification languages

    CERN Document Server

    Tsai, Jeffrey J P

    2001-01-01

    Parallel processing is a very important technique for improving the performance of various software development and maintenance activities. The purpose of this book is to introduce important techniques for parallel executation of high-level specifications of software systems. These techniques are very useful for the construction, analysis, and transformation of reliable large-scale and complex software systems. Contents: Current Approaches; Overview of the New Approach; FRORL Requirements Specification Language and Its Decomposition; Rewriting and Data Dependency, Control Flow Analysis of a Lo

  15. Mobile Parallel Manipulators, Modelling and Data-Driven Motion Planning

    Directory of Open Access Journals (Sweden)

    Amar Khoukhi

    2013-11-01

    Full Text Available This paper provides a kinematic and dynamic analysis of mobile parallel manipulators (MPM. The study is conducted on a composed multi-degree of freedom (DOF parallel robot carried by a wheeled mobile platform. Both positional and differential kinematics problems for the hybrid structure are solved, and the redundancy problem is solved using joint limit secondary criterion- based generalized-pseudo-inverse. A minimum time trajectory parameterization is obtained via cycloidal profile to initialize multi-objective trajectory planning of the MPM. Considered objectives include time energy minimization redundancy resolution and singularity avoidance. Simulation results illustrating the effectiveness of the proposed approach are presented and discussed.

  16. Phase Transition in Tensor Models

    CERN Document Server

    Delepouve, Thibault

    2015-01-01

    Generalizing matrix models, tensor models generate dynamical triangulations in any dimension and support a $1/N$ expansion. Using the intermediate field representation we explicitly rewrite a quartic tensor model as a field theory for a fluctuation field around a vacuum state corresponding to the resummation of the entire leading order in $1/N$ (a resummation of the melonic family). We then prove that the critical regime in which the continuum limit in the sense of dynamical triangulations is reached is precisely a phase transition in the field theory sense for the fluctuation field.

  17. Stiffness Model of a 3-DOF Parallel Manipulator with Two Additional Legs

    Directory of Open Access Journals (Sweden)

    Guang Yu

    2014-10-01

    Full Text Available This paper investigates the stiffness modelling of a 3-DOF parallel manipulator with two additional legs. The stiffness model in six directions of the 3-DOF parallel manipulator with two additional legs is derived by performing condensation of DOFs for the joint connection and treatment of the fixed-end connections. Moreover, this modelling method is used to derive the stiffness model of the manipulator with zero/one additional legs. Two performance indices are given to compare the stiffness of the parallel manipulators with two additional legs with those of the manipulators with zero/one additional legs. The method not only can be used to derive the stiffness model of a redundant parallel manipulator, but also to model the stiffness of non-redundant parallel manipulators.

  18. Sliding-mode control of a six-phase series/parallel connected two induction motors drive.

    Science.gov (United States)

    Abjadi, Navid R

    2014-11-01

    In this paper, a parallel configuration is proposed for two quasi six-phase induction motors (QIMs) to feed them from a single six-phase voltage source inverter (VSI). A direct torque control (DTC) based on input-output feedback linearization (IOFL) combined with sliding mode (SM) control is used for each QIM in stationary reference frame. In addition, an adaptive scheme is employed to solve the motor resistances mismatching problem. The effectiveness and capability of the proposed method are shown by practical results obtained for two QIMs in series/parallel connections supplied from a single VSI. The decoupling control of QIMs and the feasibility of their torque and flux control are investigated. Moreover, a complete comparison between series and parallel connections of two QIMs is given.

  19. Pi: A Parallel Architecture Interface for Multi-Model Execution

    Science.gov (United States)

    1990-07-01

    Directory Schemes for Cache Coherence. In The 15th Annual Interna- tional Symposium on Computer Architecture. IEEE Computer Society and ACM, June 1988. [3...Annual International Symposium on Computer Architecture. IEEE Computer Society and ACM, June 1986. [5] Arvind and Rishiyur S. Nikhil. A Dataflow...Overview, 1987. [9] Roberto Bisiani and Alessandro Forin. Multilanguage Parallel Programming of Heterogeneous Machines. IEEE Transactions on Computers

  20. Phase Computations and Phase Models for Discrete Molecular Oscillators.

    OpenAIRE

    Demir, Alper; Şuvak, Önder

    2012-01-01

    RESEARCH Open Access Phase computations and phase models for discrete molecular oscillators Onder Suvak* and Alper Demir Abstract Background: Biochemical oscillators perform crucial functions in cells, e.g., they set up circadian clocks. The dynamical behavior of oscillators is best described and analyzed in terms of the scalar quantity, phase. A rigorous and useful definition for phase is based on the so-called isochrons of oscillators. Phase computation techniques for ...

  1. A model for optimizing file access patterns using spatio-temporal parallelism

    Energy Technology Data Exchange (ETDEWEB)

    Boonthanome, Nouanesengsy [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Patchett, John [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Geveci, Berk [Kitware Inc., Clifton Park, NY (United States); Ahrens, James [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Bauer, Andy [Kitware Inc., Clifton Park, NY (United States); Chaudhary, Aashish [Kitware Inc., Clifton Park, NY (United States); Miller, Ross G. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Shipman, Galen M. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Williams, Dean N. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2013-01-01

    For many years now, I/O read time has been recognized as the primary bottleneck for parallel visualization and analysis of large-scale data. In this paper, we introduce a model that can estimate the read time for a file stored in a parallel filesystem when given the file access pattern. Read times ultimately depend on how the file is stored and the access pattern used to read the file. The file access pattern will be dictated by the type of parallel decomposition used. We employ spatio-temporal parallelism, which combines both spatial and temporal parallelism, to provide greater flexibility to possible file access patterns. Using our model, we were able to configure the spatio-temporal parallelism to design optimized read access patterns that resulted in a speedup factor of approximately 400 over traditional file access patterns.

  2. Parallel implementation of high-speed, phase diverse atmospheric turbulence compensation method on a neural network-based architecture

    Science.gov (United States)

    Arrasmith, William W.; Sullivan, Sean F.

    2008-04-01

    Phase diversity imaging methods work well in removing atmospheric turbulence and some system effects from predominantly near-field imaging systems. However, phase diversity approaches can be computationally intensive and slow. We present a recently adapted, high-speed phase diversity method using a conventional, software-based neural network paradigm. This phase-diversity method has the advantage of eliminating many time consuming, computationally heavy calculations and directly estimates the optical transfer function from the entrance pupil phases or phase differences. Additionally, this method is more accurate than conventional Zernike-based, phase diversity approaches and lends itself to implementation on parallel software or hardware architectures. We use computer simulation to demonstrate how this high-speed, phase diverse imaging method can be implemented on a parallel, highspeed, neural network-based architecture-specifically the Cellular Neural Network (CNN). The CNN architecture was chosen as a representative, neural network-based processing environment because 1) the CNN can be implemented in 2-D or 3-D processing schemes, 2) it can be implemented in hardware or software, 3) recent 2-D implementations of CNN technology have shown a 3 orders of magnitude superiority in speed, area, or power over equivalent digital representations, and 4) a complete development environment exists. We also provide a short discussion on processing speed.

  3. Parallel Nonnegative Least Squares Solvers for Model Order Reduction

    Science.gov (United States)

    2016-03-01

    not for the PQN method. For the latter method the size of the active set is controlled to promote sparse solutions. This is described in Section 3.2.1...or any other aspect of this collection of information, including suggestions for reducing the burden, to Department of Defense, Washington...21005-5066 primary author’s email: <james.p.collins106.civ@mail.mil>. Parallel nonnegative least squares (NNLS) solvers are developed specifically for

  4. Cross-Circulating Current Suppression Method for Parallel Three-Phase Two-Level Inverters

    DEFF Research Database (Denmark)

    Wei, Baoze; Guerrero, Josep M.; Guo, Xiaoqiang

    2015-01-01

    The parallel architecture is very popular for power inverters to increase the power level. This paper presents a method for the parallel operation of inverters in an ac-distributed system, to suppress the cross-circulating current based on virtual impedance without current-sharing bus...

  5. Solution-phase parallel synthesis of ruxolitinib-derived Janus kinase inhibitors via copper-catalyzed azide-alkyne cycloaddition.

    Science.gov (United States)

    Gehringer, Matthias; Forster, Michael; Laufer, Stefan A

    2015-01-12

    A solution-phase parallel synthesis of triazole-derived ruxolitinib analogues was developed in the current study. The method employs copper-catalyzed azide-alkyne cycloaddition to build up the central triazole template. Product isolation by precipitation and centrifugation is straightforward and yields high purity compounds suited for biological profiling. A simple protocol for accessing the terminal alkyne precursors in high yields was established and a library of ruxolitinib-like triazoles featuring diverse functional groups was prepared. In addition, a model for the binding mode of ruxolitinib to Janus kinase (JAK) 2 is proposed. In contrast to previous models, the pose explains the compound selectivity for JAK1/JAK2 and is in accordance with published structure-activity data. On this basis, a structure-based design hypothesis for inverting the selectivity profile of ruxolitinib is deduced. Application of this strategy identified a moderately potent JAK3 inhibitor (35 nM) with high selectivity against other JAKs, potentially exploiting a covalent binding mode.

  6. A simple and efficient parallel FFT algorithm using the BSP model

    NARCIS (Netherlands)

    Bisseling, R.H.; Inda, M.A.

    2000-01-01

    In this paper we present a new parallel radix FFT algorithm based on the BSP model Our parallel algorithm uses the groupcyclic distribution family which makes it simple to understand and easy to implement We show how to reduce the com munication cost of the algorithm by a factor of three in the case

  7. Toward a Model Framework of Generalized Parallel Componential Processing of Multi-Symbol Numbers

    Science.gov (United States)

    Huber, Stefan; Cornelsen, Sonja; Moeller, Korbinian; Nuerk, Hans-Christoph

    2015-01-01

    In this article, we propose and evaluate a new model framework of parallel componential multi-symbol number processing, generalizing the idea of parallel componential processing of multi-digit numbers to the case of negative numbers by considering the polarity signs similar to single digits. In a first step, we evaluated this account by defining…

  8. A Model of Parallel Kinematics for Machine Calibration

    DEFF Research Database (Denmark)

    Pedersen, David Bue; Bæk Nielsen, Morten; Kløve Christensen, Simon

    2016-01-01

    Parallel kinematics have been adopted by more than 25 manufacturers of high-end desktop 3D printers [Wohlers Report (2015), p.118] as well as by research projects such as the WASP project [WASP (2015)], a 12 meter tall linear delta robot for Additive Manufacture of large-scale components...... developed in order to decompose the different types of geometrical errors into 6 elementary cases. Deliberate introduction of errors to the virtual machine has subsequently allowed for the generation of deviation plots that can be used as a strong tool for the identification and correction of geometrical...... errors on a physical machine tool....

  9. Parallel-Batch Scheduling with Two Models of Deterioration to Minimize the Makespan

    Directory of Open Access Journals (Sweden)

    Cuixia Miao

    2014-01-01

    Full Text Available We consider the bounded parallel-batch scheduling with two models of deterioration, in which the processing time of the first model is pj=aj+αt and of the second model is pj=a+αjt. The objective is to minimize the makespan. We present O(n log n time algorithms for the single-machine problems, respectively. And we propose fully polynomial time approximation schemes to solve the identical-parallel-machine problem and uniform-parallel-machine problem, respectively.

  10. Efficiently parallelized modeling of tightly focused, large bandwidth laser pulses

    CERN Document Server

    Dumont, Joey; Lefebvre, Catherine; Gagnon, Denis; MacLean, Steve

    2016-01-01

    The Stratton-Chu integral representation of electromagnetic fields is used to study the spatio-temporal properties of large bandwidth laser pulses focused by high numerical aperture mirrors. We review the formal aspects of the derivation of diffraction integrals from the Stratton-Chu representation and discuss the use of the Hadamard finite part in the derivation of the physical optics approximation. By analyzing the formulation we show that, for the specific case of a parabolic mirror, the integrands involved in the description of the reflected field near the focal spot do not possess the strong oscillations characteristic of diffraction integrals. Consequently, the integrals can be evaluated with simple and efficient quadrature methods rather than with specialized, more costly approaches. We report on the development of an efficiently parallelized algorithm that evaluates the Stratton-Chu diffraction integrals for incident fields of arbitrary temporal and spatial dependence. We use our method to show that t...

  11. Experimental and modelling results of a parallel-plate based active magnetic regenerator

    DEFF Research Database (Denmark)

    Tura, A.; Nielsen, Kaspar Kirstein; Rowe, A.

    2012-01-01

    The performance of a permanent magnet magnetic refrigerator (PMMR) using gadolinium parallel plates is described. The configuration and operating parameters are described in detail. Experimental results are compared to simulations using an established twodimensional model of an active magnetic...

  12. Mathematical Model of Thyristor Inverter Including a Series-parallel Resonant Circuit

    Directory of Open Access Journals (Sweden)

    Miroslaw Luft

    2008-01-01

    Full Text Available The article presents a mathematical model of thyristor inverter including a series-parallel resonant circuit with theaid of state variable method. Maple procedures are used to compute current and voltage waveforms in the inverter.

  13. Efficient parallel Levenberg-Marquardt model fitting towards real-time automated parametric imaging microscopy.

    Science.gov (United States)

    Zhu, Xiang; Zhang, Dianwen

    2013-01-01

    We present a fast, accurate and robust parallel Levenberg-Marquardt minimization optimizer, GPU-LMFit, which is implemented on graphics processing unit for high performance scalable parallel model fitting processing. GPU-LMFit can provide a dramatic speed-up in massive model fitting analyses to enable real-time automated pixel-wise parametric imaging microscopy. We demonstrate the performance of GPU-LMFit for the applications in superresolution localization microscopy and fluorescence lifetime imaging microscopy.

  14. Efficient Parallel Levenberg-Marquardt Model Fitting towards Real-Time Automated Parametric Imaging Microscopy

    OpenAIRE

    Xiang Zhu; Dianwen Zhang

    2013-01-01

    We present a fast, accurate and robust parallel Levenberg-Marquardt minimization optimizer, GPU-LMFit, which is implemented on graphics processing unit for high performance scalable parallel model fitting processing. GPU-LMFit can provide a dramatic speed-up in massive model fitting analyses to enable real-time automated pixel-wise parametric imaging microscopy. We demonstrate the performance of GPU-LMFit for the applications in superresolution localization microscopy and fluorescence lifetim...

  15. Describing, using 'recognition cones'. [parallel-series model with English-like computer program

    Science.gov (United States)

    Uhr, L.

    1973-01-01

    A parallel-serial 'recognition cone' model is examined, taking into account the model's ability to describe scenes of objects. An actual program is presented in an English-like language. The concept of a 'description' is discussed together with possible types of descriptive information. Questions regarding the level and the variety of detail are considered along with approaches for improving the serial representations of parallel systems.

  16. A dual-frequency online PMP method with phase-shifting parallel to moving direction of measured object

    Science.gov (United States)

    Peng, Kuang; Cao, Yiping; Wu, Yingchun; Chen, Cheng; Wan, Yingying

    2017-01-01

    A dual-frequency online phase measurement profilometry (PMP) method with phase-shifting parallel to moving direction of measured object is proposed in this paper. The high-frequency fringe is used for the better modulation patterns in pixel matching and it is not modified by the measured object's surface. Based on the relative positive between the moving measured object and digital light processing (DLP), the high-frequency fringe in each dual-frequency deformed pattern after pixel matching is the same. As a result, the phase can be calculated directly by the improved Stoilov algorithm without filtering out the low-frequency component containing the measured object's height information. As there is no filtering process in phase calculation, the valid information loss can be avoided so that the accuracy of the proposed method can be guaranteed. Simulations and experiments prove the method's feasibility and precision.

  17. Partitioning and packing mathematical simulation models for calculation on parallel computers

    Science.gov (United States)

    Arpasi, D. J.; Milner, E. J.

    1986-01-01

    The development of multiprocessor simulations from a serial set of ordinary differential equations describing a physical system is described. Degrees of parallelism (i.e., coupling between the equations) and their impact on parallel processing are discussed. The problem of identifying computational parallelism within sets of closely coupled equations that require the exchange of current values of variables is described. A technique is presented for identifying this parallelism and for partitioning the equations for parallel solution on a multiprocessor. An algorithm which packs the equations into a minimum number of processors is also described. The results of the packing algorithm when applied to a turbojet engine model are presented in terms of processor utilization.

  18. Parallelization of fine-scale computation in Agile Multiscale Modelling Methodology

    Science.gov (United States)

    Macioł, Piotr; Michalik, Kazimierz

    2016-10-01

    Nowadays, multiscale modelling of material behavior is an extensively developed area. An important obstacle against its wide application is high computational demands. Among others, the parallelization of multiscale computations is a promising solution. Heterogeneous multiscale models are good candidates for parallelization, since communication between sub-models is limited. In this paper, the possibility of parallelization of multiscale models based on Agile Multiscale Methodology framework is discussed. A sequential, FEM based macroscopic model has been combined with concurrently computed fine-scale models, employing a MatCalc thermodynamic simulator. The main issues, being investigated in this work are: (i) the speed-up of multiscale models with special focus on fine-scale computations and (ii) on decreasing the quality of computations enforced by parallel execution. Speed-up has been evaluated on the basis of Amdahl's law equations. The problem of `delay error', rising from the parallel execution of fine scale sub-models, controlled by the sequential macroscopic sub-model is discussed. Some technical aspects of combining third-party commercial modelling software with an in-house multiscale framework and a MPI library are also discussed.

  19. Efficiently parallelized modeling of tightly focused, large bandwidth laser pulses

    Science.gov (United States)

    Dumont, Joey; Fillion-Gourdeau, François; Lefebvre, Catherine; Gagnon, Denis; MacLean, Steve

    2017-02-01

    The Stratton-Chu integral representation of electromagnetic fields is used to study the spatio-temporal properties of large bandwidth laser pulses focused by high numerical aperture mirrors. We review the formal aspects of the derivation of diffraction integrals from the Stratton-Chu representation and discuss the use of the Hadamard finite part in the derivation of the physical optics approximation. By analyzing the formulation we show that, for the specific case of a parabolic mirror, the integrands involved in the description of the reflected field near the focal spot do not possess the strong oscillations characteristic of diffraction integrals. Consequently, the integrals can be evaluated with simple and efficient quadrature methods rather than with specialized, more costly approaches. We report on the development of an efficiently parallelized algorithm that evaluates the Stratton-Chu diffraction integrals for incident fields of arbitrary temporal and spatial dependence. This method has the advantage that its input is the unfocused field coming from the laser chain, which is experimentally known with high accuracy. We use our method to show that the reflection of a linearly polarized Gaussian beam of femtosecond duration off a high numerical aperture parabolic mirror induces ellipticity in the dominant field components and generates strong longitudinal components. We also estimate that future high-power laser facilities may reach intensities of {10}24 {{W}} {{cm}}-2.

  20. Parallel Lagrangian models for turbulent transport and chemistry

    NARCIS (Netherlands)

    Crone, Gilia Cornelia

    1997-01-01

    In this thesis we give an overview of recent stochastic Lagrangian models and present a new particle model for turbulent dispersion and chemical reactions. Our purpose is to investigate and assess the feasibility of the Lagrangian approach for modelling the turbulent dispersion and chemistry

  1. Parallel Development of Products and New Business Models

    DEFF Research Database (Denmark)

    Lund, Morten; Hansen, Poul H. Kyvsgård

    2014-01-01

    The perception of product development and the practical execution of product development in professional organizations have undergone dramatic changes in recent years. Many of these chances relate to introduction of broader and more cross-disciplinary views that involves new organizational functi...... and innovation management the 4th generation models are increasingly including the concept business models and business model innovation....

  2. [Parallel PLS algorithm using MapReduce and its aplication in spectral modeling].

    Science.gov (United States)

    Yang, Hui-Hua; Du, Ling-Ling; Li, Ling-Qiao; Tang, Tian-Biao; Guo, Tuo; Liang, Qiong-Lin; Wang, Yi-Ming; Luo, Guo-An

    2012-09-01

    Partial least squares (PLS) has been widely used in spectral analysis and modeling, and it is computation-intensive and time-demanding when dealing with massive data To solve this problem effectively, a novel parallel PLS using MapReduce is proposed, which consists of two procedures, the parallelization of data standardizing and the parallelization of principal component computing. Using NIR spectral modeling as an example, experiments were conducted on a Hadoop cluster, which is a collection of ordinary computers. The experimental results demonstrate that the parallel PLS algorithm proposed can handle massive spectra, can significantly cut down the modeling time, and gains a basically linear speedup, and can be easily scaled up.

  3. Parallel Motion Simulation of Large-Scale Real-Time Crowd in a Hierarchical Environmental Model

    Directory of Open Access Journals (Sweden)

    Xin Wang

    2012-01-01

    Full Text Available This paper presents a parallel real-time crowd simulation method based on a hierarchical environmental model. A dynamical model of the complex environment should be constructed to simulate the state transition and propagation of individual motions. By modeling of a virtual environment where virtual crowds reside, we employ different parallel methods on a topological layer, a path layer and a perceptual layer. We propose a parallel motion path matching method based on the path layer and a parallel crowd simulation method based on the perceptual layer. The large-scale real-time crowd simulation becomes possible with these methods. Numerical experiments are carried out to demonstrate the methods and results.

  4. LARGE SIGNAL DISCRETE-TIME MODEL FOR PARALLELED BUCK CONVERTERS

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    As a number of switch-combinations are involved in operation of multi-converter-system, conventional methods for obtaining discrete-time large signal model of these converter systems result in a very complex solution. A simple sampled-data technique for modeling distributed dc-dc PWM converters system (DCS) was proposed. The resulting model is nonlinear and can be linearized for analysis and design of DCS. These models are also suitable for fast simulation of these networks. As the input and output of dc-dc converters are slow varying, suitable model for DCS was obtained in terms of the finite order input/output approximation.

  5. The Parallelism of Traditional Transaction Model%传统事务模型的并行性

    Institute of Scientific and Technical Information of China (English)

    张志强; 李建中; 周立柱

    2001-01-01

    Transaction is a very important concept in DBMS,which has several features such as consistency,atomicity, durability and isolation. In this paper, we first analyze the parallelism of traditional transaction model. Next we point out that we can investigate more parallelism with a high parallel processing manner underlying multi-processors parallel structures. We will then compare the influence of two different software architectures on database system parallelism.

  6. Double-layer parallelization for hydrological model calibration on HPC systems

    Science.gov (United States)

    Zhang, Ang; Li, Tiejian; Si, Yuan; Liu, Ronghua; Shi, Haiyun; Li, Xiang; Li, Jiaye; Wu, Xia

    2016-04-01

    Large-scale problems that demand high precision have remarkably increased the computational time of numerical simulation models. Therefore, the parallelization of models has been widely implemented in recent years. However, computing time remains a major challenge when a large model is calibrated using optimization techniques. To overcome this difficulty, we proposed a double-layer parallel system for hydrological model calibration using high-performance computing (HPC) systems. The lower-layer parallelism is achieved using a hydrological model, the Digital Yellow River Integrated Model, which was parallelized by decomposing river basins. The upper-layer parallelism is achieved by simultaneous hydrological simulations with different parameter combinations in the same generation of the genetic algorithm and is implemented using the job scheduling functions of an HPC system. The proposed system was applied to the upstream of the Qingjian River basin, a sub-basin of the middle Yellow River, to calibrate the model effectively by making full use of the computing resources in the HPC system and to investigate the model's behavior under various parameter combinations. This approach is applicable to most of the existing hydrology models for many applications.

  7. Phase diagram of a tubular vesicle adhering between two parallel rigid planes.

    Science.gov (United States)

    Zhou, Xiaohua; Zhao, Shumin; Zhai, Xiaobo; Zhang, Kai; Chen, Huawei; Zhang, Shengli

    2016-04-01

    In this study, we propose a two-dimensional (2D) theoretical model to explore the adhesion behavior of a tubular vesicle adhering between two rigid planes, which are constrained by a couple of forces. Based upon the free-energy functional of the system, the equations for the equilibrium shape are derived. The general solution for the system with zero pressure is obtained analytically and the stability of the corresponding equilibrium shapes is tested by numerical simulation. With the volume constraint, three kinds of typical stable shapes are obtained through scanning the parameter space numerically. The phase diagram is obtained and it is occupied mostly by nonsymmetrical shapes. The force-displacement curves obtained for our model are in agreement with experimental results. The catastrophe of force is found at a critical state, which reveals a huge expanding force will act on the two planes by the vesicle. It also implies that vesicles can spontaneously squeeze into a slit only due to adhesion.

  8. Design and Performance Analysis of a Massively Parallel Atmospheric General Circulation Model

    Directory of Open Access Journals (Sweden)

    Daniel S. Schaffer

    2000-01-01

    Full Text Available In the 1990's, computer manufacturers are increasingly turning to the development of parallel processor machines to meet the high performance needs of their customers. Simultaneously, atmospheric scientists studying weather and climate phenomena ranging from hurricanes to El Niño to global warming require increasingly fine resolution models. Here, implementation of a parallel atmospheric general circulation model (GCM which exploits the power of massively parallel machines is described. Using the horizontal data domain decomposition methodology, this FORTRAN 90 model is able to integrate a 0.6° longitude by 0.5° latitude problem at a rate of 19 Gigaflops on 512 processors of a Cray T3E 600; corresponding to 280 seconds of wall-clock time per simulated model day. At this resolution, the model has 64 times as many degrees of freedom and performs 400 times as many floating point operations per simulated day as the model it replaces.

  9. Modelling distribution of evaporating CO2 in parallel minichannels

    DEFF Research Database (Denmark)

    Brix, Wiebke; Kærn, Martin Ryhl; Elmegaard, Brian

    2010-01-01

    -known empirical correlations for calculating frictional pressure drop and heat transfer coefficients. An investigation of different correlations for boiling two-phase flow shows that the choice of correlation is insignificant regarding the overall results. It is shown that non-uniform airflow leads...... to maldistribution of the refrigerant and considerable capacity reduction of the evaporator. Uneven inlet ualities to the different channels show only minor effects on the refrigerant distribution and evaporator capacity as long as the channels are vertically oriented with CO2 flowing upwards. For horizontal...

  10. Parallel computation for biological sequence comparison: comparing a portable model to the native model for the Intel Hypercube.

    Science.gov (United States)

    Nadkarni, P M; Miller, P L

    1991-01-01

    A parallel program for inter-database sequence comparison was developed on the Intel Hypercube using two models of parallel programming. One version was built using machine-specific Hypercube parallel programming commands. The other version was built using Linda, a machine-independent parallel programming language. The two versions of the program provide a case study comparing these two approaches to parallelization in an important biological application area. Benchmark tests with both programs gave comparable results with a small number of processors. As the number of processors was increased, the Linda version was somewhat less efficient. The Linda version was also run without change on Network Linda, a virtual parallel machine running on a network of desktop workstations.

  11. Running Large-Scale Air Pollution Models on Parallel Computers

    DEFF Research Database (Denmark)

    Georgiev, K.; Zlatev, Z.

    2000-01-01

    Proceedings of the 23rd NATO/CCMS International Technical Meeting on Air Pollution Modeling and Its Application, held 28 September - 2 October 1998, in Varna, Bulgaria.......Proceedings of the 23rd NATO/CCMS International Technical Meeting on Air Pollution Modeling and Its Application, held 28 September - 2 October 1998, in Varna, Bulgaria....

  12. Application of Parallel Algorithms in an Air Pollution Model

    DEFF Research Database (Denmark)

    Georgiev, K.; Zlatev, Z.

    1999-01-01

    Proceedings of the NATO Advanced Research Workshop on Large Scale Computations in Air Pollution Modelling, Sofia, Bulgaria, 6-10 July 1998......Proceedings of the NATO Advanced Research Workshop on Large Scale Computations in Air Pollution Modelling, Sofia, Bulgaria, 6-10 July 1998...

  13. F-Nets and Software Cabling: Deriving a Formal Model and Language for Portable Parallel Programming

    Science.gov (United States)

    DiNucci, David C.; Saini, Subhash (Technical Monitor)

    1998-01-01

    Parallel programming is still being based upon antiquated sequence-based definitions of the terms "algorithm" and "computation", resulting in programs which are architecture dependent and difficult to design and analyze. By focusing on obstacles inherent in existing practice, a more portable model is derived here, which is then formalized into a model called Soviets which utilizes a combination of imperative and functional styles. This formalization suggests more general notions of algorithm and computation, as well as insights into the meaning of structured programming in a parallel setting. To illustrate how these principles can be applied, a very-high-level graphical architecture-independent parallel language, called Software Cabling, is described, with many of the features normally expected from today's computer languages (e.g. data abstraction, data parallelism, and object-based programming constructs).

  14. Modeling parallelization and flexibility improvements in skill acquisition : From dual tasks to complex dynamic skills

    NARCIS (Netherlands)

    Taatgen, N

    2005-01-01

    Emerging parallel processing and increased flexibility during the acquisition of cognitive skills form a combination that is hard to reconcile with rule-based models that often produce brittle behavior. Rule-based models can exhibit these properties by adhering to 2 principles: that the model gradua

  15. Parallelized Genetic Identification of the Thermal-Electrochemical Model for Lithium-Ion Battery

    Directory of Open Access Journals (Sweden)

    Liqiang Zhang

    2013-01-01

    Full Text Available The parameters of a well predicted model can be used as health characteristics for Lithium-ion battery. This article reports a parallelized parameter identification of the thermal-electrochemical model, which significantly reduces the time consumption of parameter identification. Since the P2D model has the most predictability, it is chosen for further research and expanded to the thermal-electrochemical model by coupling thermal effect and temperature-dependent parameters. Then Genetic Algorithm is used for parameter identification, but it takes too much time because of the long time simulation of model. For this reason, a computer cluster is built by surplus computing resource in our laboratory based on Parallel Computing Toolbox and Distributed Computing Server in MATLAB. The performance of two parallelized methods, namely Single Program Multiple Data (SPMD and parallel FOR loop (PARFOR, is investigated and then the parallelized GA identification is proposed. With this method, model simulations running parallelly and the parameter identification could be speeded up more than a dozen times, and the identification result is batter than that from serial GA. This conclusion is validated by model parameter identification of a real LiFePO4 battery.

  16. Forward and backward models for fault diagnosis based on parallel genetic algorithms

    Institute of Scientific and Technical Information of China (English)

    Yi LIU; Ying LI; Yi-jia CAO; Chuang-xin GUO

    2008-01-01

    In this paper, a mathematical model consisting of forward and backward models is built on parallel genetic algorithms (PGAs) for fault diagnosis in a transmission power system. A new method to reduce the scale of fault sections is developed in the forward model and the message passing interface (MPI) approach is chosen to parallel the genetic algorithms by global sin-gle-population master-slave method (GPGAs). The proposed approach is applied to a sample system consisting of 28 sections, 84 protective relays and 40 circuit breakers. Simulation results show that the new model based on GPGAs can achieve very fast computation in online applications of large-scale power systems.

  17. Acceleration of the matrix multiplication of Radiance three phase daylighting simulations with parallel computing on heterogeneous hardware of personal computer

    Energy Technology Data Exchange (ETDEWEB)

    Zuo, Wangda [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); McNeil, Andrew [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Wetter, Michael [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Lee, Eleanor S. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

    2013-05-23

    Building designers are increasingly relying on complex fenestration systems to reduce energy consumed for lighting and HVAC in low energy buildings. Radiance, a lighting simulation program, has been used to conduct daylighting simulations for complex fenestration systems. Depending on the configurations, the simulation can take hours or even days using a personal computer. This paper describes how to accelerate the matrix multiplication portion of a Radiance three-phase daylight simulation by conducting parallel computing on heterogeneous hardware of a personal computer. The algorithm was optimized and the computational part was implemented in parallel using OpenCL. The speed of new approach was evaluated using various daylighting simulation cases on a multicore central processing unit and a graphics processing unit. Based on the measurements and analysis of the time usage for the Radiance daylighting simulation, further speedups can be achieved by using fast I/O devices and storing the data in a binary format.

  18. Optical encryption of parallel quadrature phase shift keying signals based on nondegenerate four-wave mixing in highly nonlinear fiber

    Science.gov (United States)

    Cui, Yue; Zhang, Min; Zhan, Yueying; Wang, Danshi; Huang, Shanguo

    2016-08-01

    A scheme for optical parallel encryption/decryption of quadrature phase shift keying (QPSK) signals is proposed, in which three QPSK signals at 10 Gb/s are encrypted and decrypted simultaneously in the optical domain through nondegenerate four-wave mixing in a highly nonlinear fiber. The results of theoretical analysis and simulations show that the scheme can perform high-speed wiretapping against the encryption of parallel signals and receiver sensitivities of encrypted signal and the decrypted signal are -25.9 and -23.8 dBm, respectively, at the forward error correction threshold. The results are useful for designing high-speed encryption/decryption of advanced modulated signals and thus enhancing the physical layer security of optical networks.

  19. Experimental study on the two phase flow behavior in PEM fuel cell parallel channels with porous media inserts

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Jixin [Mechanical and Aerospace Engineering, University of California, Irvine, Irvine, CA 92697-3975 (United States)

    2010-02-15

    In this study, the air-water two phase flow behavior in PEM fuel cell parallel channels with porous media inserts was experimentally investigated using a self-designed and manufactured transparent assembly. The visualization images of the two phase flow in channels with porous media inserts were presented and three patterns were summarized. Compared with the traditional hollow channel design, the novel configuration featured less severe two phase flow mal-distribution and self-adjustment to water amount in channels, although a higher pressure drop was introduced due to the porous media inserts. The dominant frequency of pressure drop signal was found to be a diagnostic tool for water behavior in channels. The novel flow channel design with porous media inserts may become a solution to the water management problem in PEM fuel cells. (author)

  20. Experimental study on the two phase flow behavior in PEM fuel cell parallel channels with porous media inserts

    Science.gov (United States)

    Chen, Jixin

    In this study, the air-water two phase flow behavior in PEM fuel cell parallel channels with porous media inserts was experimentally investigated using a self-designed and manufactured transparent assembly. The visualization images of the two phase flow in channels with porous media inserts were presented and three patterns were summarized. Compared with the traditional hollow channel design, the novel configuration featured less severe two phase flow mal-distribution and self-adjustment to water amount in channels, although a higher pressure drop was introduced due to the porous media inserts. The dominant frequency of pressure drop signal was found to be a diagnostic tool for water behavior in channels. The novel flow channel design with porous media inserts may become a solution to the water management problem in PEM fuel cells.

  1. Block and parallel modelling of broad domain nonlinear continuous mapping based on NN

    Institute of Scientific and Technical Information of China (English)

    Yang Guowei; Tu Xuyan; Wang Shoujue

    2006-01-01

    The necessity of the use of the block and parallel modeling of the nonlinear continuous mappings with NN is firstly expounded quantitatively. Then, a practical approach for the block and parallel modeling of the nonlinear continuous mappings with NN is proposed. Finally, an example indicating that the method raised in this paper can be realized by suitable existed software is given. The results of the experiment of the model discussed on the 3-D Mexican straw hat indicate that the block and parallel modeling based on NN is more precise and faster in computation than the direct ones and it is obviously a concrete example and the development of the large-scale general model established by Tu Xuyan.

  2. Modeling the Fracture of Ice Sheets on Parallel Computers

    Energy Technology Data Exchange (ETDEWEB)

    Waisman, Haim [Columbia University; Tuminaro, Ray [Sandia National Labs

    2013-10-10

    The objective of this project was to investigate the complex fracture of ice and understand its role within larger ice sheet simulations and global climate change. This objective was achieved by developing novel physics based models for ice, novel numerical tools to enable the modeling of the physics and by collaboration with the ice community experts. At the present time, ice fracture is not explicitly considered within ice sheet models due in part to large computational costs associated with the accurate modeling of this complex phenomena. However, fracture not only plays an extremely important role in regional behavior but also influences ice dynamics over much larger zones in ways that are currently not well understood. To this end, our research findings through this project offers significant advancement to the field and closes a large gap of knowledge in understanding and modeling the fracture of ice sheets in the polar regions. Thus, we believe that our objective has been achieved and our research accomplishments are significant. This is corroborated through a set of published papers, posters and presentations at technical conferences in the field. In particular significant progress has been made in the mechanics of ice, fracture of ice sheets and ice shelves in polar regions and sophisticated numerical methods that enable the solution of the physics in an efficient way.

  3. Parallelization and Performance of the NIM Weather Model Running on GPUs

    Science.gov (United States)

    Govett, Mark; Middlecoff, Jacques; Henderson, Tom; Rosinski, James

    2014-05-01

    The Non-hydrostatic Icosahedral Model (NIM) is a global weather prediction model being developed to run on the GPU and MIC fine-grain architectures. The model dynamics, written in Fortran, was initially parallelized for GPUs in 2009 using the F2C-ACC compiler and demonstrated good results running on a single GPU. Subsequent efforts have focused on (1) running efficiently on multiple GPUs, (2) parallelization of NIM for Intel-MIC using openMP, (3) assessing commercial Fortran GPU compilers now available from Cray, PGI and CAPS, (4) keeping the model up to date with the latest scientific development while maintaining a single source performance portable code, and (5) parallelization of two physics packages used in the NIM: the operational Global Forecast System (GFS) used operationally, and the widely used Weather Research and Forecast (WRF) model physics. The presentation will touch on each of these efforts, but highlight improvements in parallel performance of the NIM running on the Titan GPU cluster at ORNL, the ongong parallelization of model physics, and a recent evaluation of commercial GPU compilers using the F2C-ACC compiler as the baseline.

  4. Parallel direct solver for finite element modeling of manufacturing processes

    DEFF Research Database (Denmark)

    Nielsen, Chris Valentin; Martins, P.A.F.

    2017-01-01

    The central processing unit (CPU) time is of paramount importance in finite element modeling of manufacturing processes. Because the most significant part of the CPU time is consumed in solving the main system of equations resulting from finite element assemblies, different approaches have been...

  5. THE IMPROVEMENT OF THE COMPUTATIONAL PERFORMANCE OF THE ZONAL MODEL POMA USING PARALLEL TECHNIQUES

    Directory of Open Access Journals (Sweden)

    Yao Yu

    2014-01-01

    Full Text Available The zonal modeling approach is a new simplified computational method used to predict temperature distribution, energy in multi-zone building and indoor airflow thermal behaviors of building. Although this approach is known to use less computer resource than CFD models, the computational time is still an issue especially when buildings are characterized by complicated geometry and indoor layout of furnishings. Therefore, using a new computing technique to the current zonal models in order to reduce the computational time is a promising way to further improve the model performance and promote the wide application of zonal models. Parallel computing techniques provide a way to accomplish these purposes. Unlike the serial computations that are commonly used in the current zonal models, these parallel techniques decompose the serial program into several discrete instructions which can be executed simultaneously on different processors/threads. As a result, the computational time of the parallelized program can be significantly reduced, compared to that of the traditional serial program. In this article, a parallel computing technique, Open Multi-Processing (OpenMP, is used into the zonal model, Pressurized zOnal Model with the Air diffuser (POMA, in order to improve the model computational performance, including the reduction of computational time and the investigation of the model scalability.

  6. Advancing the extended parallel process model through the inclusion of response cost measures.

    Science.gov (United States)

    Rintamaki, Lance S; Yang, Z Janet

    2014-01-01

    This study advances the Extended Parallel Process Model through the inclusion of response cost measures, which are drawbacks associated with a proposed response to a health threat. A sample of 502 college students completed a questionnaire on perceptions regarding sexually transmitted infections and condom use after reading information from the Centers for Disease Control and Prevention on the health risks of sexually transmitted infections and the utility of latex condoms in preventing sexually transmitted infection transmission. The questionnaire included standard Extended Parallel Process Model assessments of perceived threat and efficacy, as well as questions pertaining to response costs associated with condom use. Results from hierarchical ordinary least squares regression demonstrated how the addition of response cost measures improved the predictive power of the Extended Parallel Process Model, supporting the inclusion of this variable in the model.

  7. A Parallel and Distributed Surrogate Model Implementation for Computational Steering

    KAUST Repository

    Butnaru, Daniel

    2012-06-01

    Understanding the influence of multiple parameters in a complex simulation setting is a difficult task. In the ideal case, the scientist can freely steer such a simulation and is immediately presented with the results for a certain configuration of the input parameters. Such an exploration process is however not possible if the simulation is computationally too expensive. For these cases we present in this paper a scalable computational steering approach utilizing a fast surrogate model as substitute for the time-consuming simulation. The surrogate model we propose is based on the sparse grid technique, and we identify the main computational tasks associated with its evaluation and its extension. We further show how distributed data management combined with the specific use of accelerators allows us to approximate and deliver simulation results to a high-resolution visualization system in real-time. This significantly enhances the steering workflow and facilitates the interactive exploration of large datasets. © 2012 IEEE.

  8. Modelling and analysis of fringing and metal thickness effects in MEMS parallel plate capacitors

    Science.gov (United States)

    Shah, Kriyang; Singh, Jugdutt; Zayegh, Aladin

    2005-12-01

    This paper presents a detailed design and analysis of fringing and metal thickness effects in a Micro Electro Mechanical System (MEMS) parallel plate capacitor. MEMS capacitor is one of the widely deployed components into various applications such are pressure sensor, accelerometers, Voltage Controlled Oscillator's (VCO's) and other tuning circuits. The advantages of MEMS capacitor are miniaturisation, integration with optics, low power consumption and high quality factor for RF circuits. Parallel plate capacitor models found in literature are discussed and the best suitable model for MEMS capacitors is presented. From the equations presented it is found that fringing filed and metal thickness have logarithmic effects on capacitance and depend on width of parallel plates, distance between them and thickness of metal plates. From this analysis a precise model of a MEMS parallel plate capacitor is developed which incorporates the effects of fringing fields and metal thickness. A parallel plate MEMS capacitor has been implemented using Coventor design suite. Finite Element Method (FEM) analysis in Coventorware design suite has been performed to verify the accuracy of the proposed model for suitable range of dimensions for MEMS capacitor Simulations and analysis show that the error between the designed and the simulated values of MEMS capacitor is significantly reduced. Application of the modified model for computing capacitance of a combed device shows that the designed values greatly differ from simulated results noticeably from 1.0339pF to 1.3171pF in case of fringed devices.

  9. Design and Implementation of a Parallel Multivariate Ensemble Kalman Filter for the Poseidon Ocean General Circulation Model

    Science.gov (United States)

    Keppenne, Christian L.; Rienecker, Michele M.; Koblinsky, Chester (Technical Monitor)

    2001-01-01

    A multivariate ensemble Kalman filter (MvEnKF) implemented on a massively parallel computer architecture has been implemented for the Poseidon ocean circulation model and tested with a Pacific Basin model configuration. There are about two million prognostic state-vector variables. Parallelism for the data assimilation step is achieved by regionalization of the background-error covariances that are calculated from the phase-space distribution of the ensemble. Each processing element (PE) collects elements of a matrix measurement functional from nearby PEs. To avoid the introduction of spurious long-range covariances associated with finite ensemble sizes, the background-error covariances are given compact support by means of a Hadamard (element by element) product with a three-dimensional canonical correlation function. The methodology and the MvEnKF configuration are discussed. It is shown that the regionalization of the background covariances; has a negligible impact on the quality of the analyses. The parallel algorithm is very efficient for large numbers of observations but does not scale well beyond 100 PEs at the current model resolution. On a platform with distributed memory, memory rather than speed is the limiting factor.

  10. Parallel preparation of plan-view transmission electron microscopy specimens by vapor-phase etching with integrated etch stops

    Energy Technology Data Exchange (ETDEWEB)

    English, Timothy S., E-mail: englisht@stanford.edu [Department of Mechanical Engineering, Stanford University, Stanford, CA 94305 (United States); Provine, J [Department of Mechanical Engineering, Stanford University, Stanford, CA 94305 (United States); Marshall, Ann F.; Koh, Ai Leen [Stanford Nano Shared Facilities, Stanford University, Stanford, CA 94305 (United States); Kenny, Thomas W. [Department of Mechanical Engineering, Stanford University, Stanford, CA 94305 (United States)

    2016-07-15

    Specimen preparation remains a practical challenge in transmission electron microscopy and frequently limits the quality of structural and chemical characterization data obtained. Prevailing methods for thinning of specimens to electron transparency are serial in nature, time consuming, and prone to producing artifacts and specimen failure. This work presents an alternative method for the preparation of plan-view specimens using isotropic vapor-phase etching with integrated etch stops. An ultrathin amorphous etch-stop layer simultaneously serves as an electron transparent support membrane whose thickness is defined by a controlled growth process such as atomic layer deposition with sub-nanometer precision. This approach eliminates the need for mechanical polishing or ion milling to achieve electron transparency, and reduces the occurrence of preparation induced artifacts. Furthermore, multiple specimens from a plurality of samples can be thinned in parallel due to high selectivity of the vapor-phase etching process. These features enable dramatic reductions in preparation time and cost without sacrificing specimen quality and provide advantages over wet etching techniques. Finally, we demonstrate a platform for high-throughput transmission electron microscopy of plan-view specimens by combining the parallel preparation capabilities of vapor-phase etching with wafer-scale micro- and nanofabrication. - Highlights: • Parallel thinning of plan-view specimens enables high-throughput microscopy studies. • The support membrane thickness is controlled with sub-nanometer precision. • No physical etching (polishing, dimpling, or ion milling) is required. • Large area and uniformly thin specimens are suitable for Cs-corrected HRTEM. • Wafer-scale integration enables custom specimens for in situ experiments.

  11. Parallel computer processing and modeling: applications for the ICU

    Science.gov (United States)

    Baxter, Grant; Pranger, L. Alex; Draghic, Nicole; Sims, Nathaniel M.; Wiesmann, William P.

    2003-07-01

    Current patient monitoring procedures in hospital intensive care units (ICUs) generate vast quantities of medical data, much of which is considered extemporaneous and not evaluated. Although sophisticated monitors to analyze individual types of patient data are routinely used in the hospital setting, this equipment lacks high order signal analysis tools for detecting long-term trends and correlations between different signals within a patient data set. Without the ability to continuously analyze disjoint sets of patient data, it is difficult to detect slow-forming complications. As a result, the early onset of conditions such as pneumonia or sepsis may not be apparent until the advanced stages. We report here on the development of a distributed software architecture test bed and software medical models to analyze both asynchronous and continuous patient data in real time. Hardware and software has been developed to support a multi-node distributed computer cluster capable of amassing data from multiple patient monitors and projecting near and long-term outcomes based upon the application of physiologic models to the incoming patient data stream. One computer acts as a central coordinating node; additional computers accommodate processing needs. A simple, non-clinical model for sepsis detection was implemented on the system for demonstration purposes. This work shows exceptional promise as a highly effective means to rapidly predict and thereby mitigate the effect of nosocomial infections.

  12. A numerical model for thermoelectric generator with the parallel-plate heat exchanger

    Science.gov (United States)

    Yu, Jianlin; Zhao, Hua

    This paper presents a numerical model to predict the performance of thermoelectric generator with the parallel-plate heat exchanger. The model is based on an elemental approach and exhibits its feature in analyzing the temperature change in a thermoelectric generator and concomitantly its performance under operation conditions. The numerical simulated examples are demonstrated for the thermoelectric generator of parallel flow type and counter flow type in this paper. Simulation results show that the variations in temperature of the fluids in the thermoelectric generator are linear. The numerical model developed in this paper may be also applied to further optimization study for thermoelectric generator.

  13. Phase computations and phase models for discrete molecular oscillators

    Science.gov (United States)

    2012-01-01

    Background Biochemical oscillators perform crucial functions in cells, e.g., they set up circadian clocks. The dynamical behavior of oscillators is best described and analyzed in terms of the scalar quantity, phase. A rigorous and useful definition for phase is based on the so-called isochrons of oscillators. Phase computation techniques for continuous oscillators that are based on isochrons have been used for characterizing the behavior of various types of oscillators under the influence of perturbations such as noise. Results In this article, we extend the applicability of these phase computation methods to biochemical oscillators as discrete molecular systems, upon the information obtained from a continuous-state approximation of such oscillators. In particular, we describe techniques for computing the instantaneous phase of discrete, molecular oscillators for stochastic simulation algorithm generated sample paths. We comment on the accuracies and derive certain measures for assessing the feasibilities of the proposed phase computation methods. Phase computation experiments on the sample paths of well-known biological oscillators validate our analyses. Conclusions The impact of noise that arises from the discrete and random nature of the mechanisms that make up molecular oscillators can be characterized based on the phase computation techniques proposed in this article. The concept of isochrons is the natural choice upon which the phase notion of oscillators can be founded. The isochron-theoretic phase computation methods that we propose can be applied to discrete molecular oscillators of any dimension, provided that the oscillatory behavior observed in discrete-state does not vanish in a continuous-state approximation. Analysis of the full versatility of phase noise phenomena in molecular oscillators will be possible if a proper phase model theory is developed, without resorting to such approximations. PMID:22687330

  14. Experimental Behavior Evaluation of Series and Parallel Connected Constant Phase Elements

    KAUST Repository

    Tsirimokou, Georgia

    2017-01-28

    Fractional-order capacitors are the core building blocks for implementing fractional-order circuits. Due to the absence of their commercial availability, they can be approximated through appropriately configured passive or active integer-order element topologies. Such a topology, constructed using Operational Transconductance Amplifiers (OTAs) and capacitors has been implemented in monolithic form through the AMS 0.35μm CMOS process, and the fabricated chips are employed here for the experimental evaluation of the behavior of networks constructed from fractional-order capacitors connected in series or in parallel.

  15. A one-dimensional heat transfer model for parallel-plate thermoacoustic heat exchangers

    NARCIS (Netherlands)

    de Jong, Anne; Wijnant, Ysbrand H.; de Boer, Andries

    2014-01-01

    A one-dimensional (1D) laminar oscillating flow heat transfer model is derived and applied to parallel-plate thermoacoustic heat exchangers. The model can be used to estimate the heat transfer from the solid wall to the acoustic medium, which is required for the heat input/output of thermoacoustic

  16. Remarks on nonlinear relation among phases and frequencies in modulational instabilities of parallel propagating Alfven waves

    CERN Document Server

    Nariyuki, Y; Nariyuki, Yasuhiro; Hada, Tohru

    2006-01-01

    Nonlinear relations among frequencies and phases in modulational instability of circularly polarized Alfven waves are discussed, within the context of one dimensional, dissipation-less, unforced fluid system. We show that generation of phase coherence is a natural consequence of the modulational instability of Alfven waves. Furthermore, we quantitatively evaluate intensity of wave-wave interaction by using bi-coherence, and also by computing energy flow among wave modes, and demonstrate that the energy flow is directly related to the phase coherence generation.

  17. A Tool for Performance Modeling of Parallel Programs

    Directory of Open Access Journals (Sweden)

    J.A. González

    2003-01-01

    Full Text Available Current performance prediction analytical models try to characterize the performance behavior of actual machines through a small set of parameters. In practice, substantial deviations are observed. These differences are due to factors as memory hierarchies or network latency. A natural approach is to associate a different proportionality constant with each basic block, and analogously, to associate different latencies and bandwidths with each "communication block". Unfortunately, to use this approach implies that the evaluation of parameters must be done for each algorithm. This is a heavy task, implying experiment design, timing, statistics, pattern recognition and multi-parameter fitting algorithms. Software support is required. We present a compiler that takes as source a C program annotated with complexity formulas and produces as output an instrumented code. The trace files obtained from the execution of the resulting code are analyzed with an interactive interpreter, giving us, among other information, the values of those parameters.

  18. FoSSI: the family of simplified solver interfaces for the rapid development of parallel numerical atmosphere and ocean models

    Science.gov (United States)

    Frickenhaus, Stephan; Hiller, Wolfgang; Best, Meike

    The portable software FoSSI is introduced that—in combination with additional free solver software packages—allows for an efficient and scalable parallel solution of large sparse linear equations systems arising in finite element model codes. FoSSI is intended to support rapid model code development, completely hiding the complexity of the underlying solver packages. In particular, the model developer need not be an expert in parallelization and is yet free to switch between different solver packages by simple modifications of the interface call. FoSSI offers an efficient and easy, yet flexible interface to several parallel solvers, most of them available on the web, such as PETSC, AZTEC, MUMPS, PILUT and HYPRE. FoSSI makes use of the concept of handles for vectors, matrices, preconditioners and solvers, that is frequently used in solver libraries. Hence, FoSSI allows for a flexible treatment of several linear equations systems and associated preconditioners at the same time, even in parallel on separate MPI-communicators. The second special feature in FoSSI is the task specifier, being a combination of keywords, each configuring a certain phase in the solver setup. This enables the user to control a solver over one unique subroutine. Furthermore, FoSSI has rather similar features for all solvers, making a fast solver intercomparison or exchange an easy task. FoSSI is a community software, proven in an adaptive 2D-atmosphere model and a 3D-primitive equation ocean model, both formulated in finite elements. The present paper discusses perspectives of an OpenMP-implementation of parallel iterative solvers based on domain decomposition methods. This approach to OpenMP solvers is rather attractive, as the code for domain-local operations of factorization, preconditioning and matrix-vector product can be readily taken from a sequential implementation that is also suitable to be used in an MPI-variant. Code development in this direction is in an advanced state under

  19. Parallel Machine Scheduling Models with Fuzzy Parameters and Precedence Constraints: A Credibility Approach

    Institute of Scientific and Technical Information of China (English)

    HOU Fu-jun; WU Qi-zong

    2007-01-01

    A method for modeling the parallel machine scheduling problems with fuzzy parameters and precedence constraints based on credibility measure is provided.For the given n jobs to be processed on m machines, it is assumed that the processing times and the due dates are nonnegative fuzzy numbers and all the weights are positive, crisp numbers.Based on credibility measure, three parallel machine scheduling problems and a goal-programming model are formulated.Feasible schedules are evaluated not only by their objective values but also by the credibility degree of satisfaction with their precedence constraints.The genetic algorithm is utilized to find the best solutions in a short period of time.An illustrative numerical example is also given.Simulation results show that the proposed models are effective, which can deal with the parallel machine scheduling problems with fuzzy parameters and precedence constraints based on credibility measure.

  20. Flood predictions using the parallel version of distributed numerical physical rainfall-runoff model TOPKAPI

    Science.gov (United States)

    Boyko, Oleksiy; Zheleznyak, Mark

    2015-04-01

    The original numerical code TOPKAPI-IMMS of the distributed rainfall-runoff model TOPKAPI ( Todini et al, 1996-2014) is developed and implemented in Ukraine. The parallel version of the code has been developed recently to be used on multiprocessors systems - multicore/processors PC and clusters. Algorithm is based on binary-tree decomposition of the watershed for the balancing of the amount of computation for all processors/cores. Message passing interface (MPI) protocol is used as a parallel computing framework. The numerical efficiency of the parallelization algorithms is demonstrated for the case studies for the flood predictions of the mountain watersheds of the Ukrainian Carpathian regions. The modeling results is compared with the predictions based on the lumped parameters models.

  1. Parallelization of the TRIGRS model for rainfall-induced landslides using the message passing interface

    Science.gov (United States)

    Alvioli, M.; Baum, R.L.

    2016-01-01

    We describe a parallel implementation of TRIGRS, the Transient Rainfall Infiltration and Grid-Based Regional Slope-Stability Model for the timing and distribution of rainfall-induced shallow landslides. We have parallelized the four time-demanding execution modes of TRIGRS, namely both the saturated and unsaturated model with finite and infinite soil depth options, within the Message Passing Interface framework. In addition to new features of the code, we outline details of the parallel implementation and show the performance gain with respect to the serial code. Results are obtained both on commercial hardware and on a high-performance multi-node machine, showing the different limits of applicability of the new code. We also discuss the implications for the application of the model on large-scale areas and as a tool for real-time landslide hazard monitoring.

  2. Interferometric imaging of acoustical phenomena using high-speed polarization camera and 4-step parallel phase-shifting technique

    Science.gov (United States)

    Ishikawa, K.; Yatabe, K.; Ikeda, Y.; Oikawa, Y.; Onuma, T.; Niwa, H.; Yoshii, M.

    2017-02-01

    Imaging of sound aids the understanding of the acoustical phenomena such as propagation, reflection, and diffraction, which is strongly required for various acoustical applications. The imaging of sound is commonly done by using a microphone array, whereas optical methods have recently been interested due to its contactless nature. The optical measurement of sound utilizes the phase modulation of light caused by sound. Since light propagated through a sound field changes its phase as proportional to the sound pressure, optical phase measurement technique can be used for the sound measurement. Several methods including laser Doppler vibrometry and Schlieren method have been proposed for that purpose. However, the sensitivities of the methods become lower as a frequency of sound decreases. In contrast, since the sensitivities of the phase-shifting technique do not depend on the frequencies of sounds, that technique is suitable for the imaging of sounds in the low-frequency range. The principle of imaging of sound using parallel phase-shifting interferometry was reported by the authors (K. Ishikawa et al., Optics Express, 2016). The measurement system consists of a high-speed polarization camera made by Photron Ltd., and a polarization interferometer. This paper reviews the principle briefly and demonstrates the high-speed imaging of acoustical phenomena. The results suggest that the proposed system can be applied to various industrial problems in acoustical engineering.

  3. Error modelling and experimental validation of a planar 3-PPR parallel manipulator with joint clearances

    DEFF Research Database (Denmark)

    Wu, Guanglei; Bai, Shaoping; Kepler, Jørgen Asbøl

    2012-01-01

    This paper deals with the error modelling and analysis of a 3-PPR planar parallel manipulator with joint clearances. The kinematics and the Cartesian workspace of the manipulator are analyzed. An error model is established with considerations of both configuration errors and joint clearances. Usi...... this model, the upper bounds and distributions of the pose errors for this manipulator are established. The results are compared with experimental measurements and show the effectiveness of the error prediction model....

  4. Efficient Parallel Implementation of Active Appearance Model Fitting Algorithm on GPU

    Directory of Open Access Journals (Sweden)

    Jinwei Wang

    2014-01-01

    Full Text Available The active appearance model (AAM is one of the most powerful model-based object detecting and tracking methods which has been widely used in various situations. However, the high-dimensional texture representation causes very time-consuming computations, which makes the AAM difficult to apply to real-time systems. The emergence of modern graphics processing units (GPUs that feature a many-core, fine-grained parallel architecture provides new and promising solutions to overcome the computational challenge. In this paper, we propose an efficient parallel implementation of the AAM fitting algorithm on GPUs. Our design idea is fine grain parallelism in which we distribute the texture data of the AAM, in pixels, to thousands of parallel GPU threads for processing, which makes the algorithm fit better into the GPU architecture. We implement our algorithm using the compute unified device architecture (CUDA on the Nvidia’s GTX 650 GPU, which has the latest Kepler architecture. To compare the performance of our algorithm with different data sizes, we built sixteen face AAM models of different dimensional textures. The experiment results show that our parallel AAM fitting algorithm can achieve real-time performance for videos even on very high-dimensional textures.

  5. Efficient parallel implementation of active appearance model fitting algorithm on GPU.

    Science.gov (United States)

    Wang, Jinwei; Ma, Xirong; Zhu, Yuanping; Sun, Jizhou

    2014-01-01

    The active appearance model (AAM) is one of the most powerful model-based object detecting and tracking methods which has been widely used in various situations. However, the high-dimensional texture representation causes very time-consuming computations, which makes the AAM difficult to apply to real-time systems. The emergence of modern graphics processing units (GPUs) that feature a many-core, fine-grained parallel architecture provides new and promising solutions to overcome the computational challenge. In this paper, we propose an efficient parallel implementation of the AAM fitting algorithm on GPUs. Our design idea is fine grain parallelism in which we distribute the texture data of the AAM, in pixels, to thousands of parallel GPU threads for processing, which makes the algorithm fit better into the GPU architecture. We implement our algorithm using the compute unified device architecture (CUDA) on the Nvidia's GTX 650 GPU, which has the latest Kepler architecture. To compare the performance of our algorithm with different data sizes, we built sixteen face AAM models of different dimensional textures. The experiment results show that our parallel AAM fitting algorithm can achieve real-time performance for videos even on very high-dimensional textures.

  6. Co-simulation of dynamic systems in parallel and serial model configurations

    Energy Technology Data Exchange (ETDEWEB)

    Sweafford, Trevor [General Motors, Milford (United States); Yoon, Hwan Sik [The University of Alabama, Tuscaloosa (United States)

    2013-12-15

    Recent advancement in simulation software and computation hardware make it realizable to simulate complex dynamic systems comprised of multiple submodels developed in different modeling languages. The so-called co-simulation enables one to study various aspects of a complex dynamic system with heterogeneous submodels in a cost-effective manner. Among several different model configurations for co-simulation, synchronized parallel configuration is regarded to expedite the simulation process by simulation multiple sub models concurrently on a multi core processor. In this paper, computational accuracies as well as computation time are studied for three different co-simulation frameworks : integrated, serial, and parallel. for this purpose, analytical evaluations of the three different methods are made using the explicit Euler method and then they are applied to two-DOF mass-spring systems. The result show that while the parallel simulation configuration produces the same accurate results as the integrated configuration, results of the serial configuration, results of the serial configuration show a slight deviation. it is also shown that the computation time can be reduced by running simulation in the parallel configuration. Therefore, it can be concluded that the synchronized parallel simulation methodology is the best for both simulation accuracy and time efficiency.

  7. Parallel plate model for trabecular bone exhibits volume fraction-dependant bias

    DEFF Research Database (Denmark)

    Day, J; Ding, Ming; Odgaard, A;

    2000-01-01

    Unbiased stereological methods were used in conjunction with microcomputed tomographic (micro-CT) scans of human and animal bone to investigate errors created when the parallel plate model was used to calculate morphometric parameters. Bone samples were obtained from the human proximal tibia......, canine distal femur, rat tail, and pig spine and scanned in a micro-CT scanner. Trabecular thickness, trabecular spacing, and trabecular number were calculated using the parallel plate model. Direct thickness, and spacing and connectivity density were calculated using unbiased three-dimensional methods...

  8. Parallel Path Magnet Motor: Development of the Theoretical Model and Analysis of Experimental Results

    Science.gov (United States)

    Dirba, I.; Kleperis, J.

    2011-01-01

    Analytical and numerical modelling is performed for the linear actuator of a parallel path magnet motor. In the model based on finite-element analysis, the 3D problem is reduced to a 2D problem, which is sufficiently precise in a design aspect and allows modelling the principle of a parallel path motor. The paper also describes a relevant numerical model and gives comparison with experimental results. The numerical model includes all geometrical and physical characteristics of the motor components. The magnetic flux density and magnetic force are simulated using FEMM 4.2 software. An experimental model has also been developed and verified for the core of switchable magnetic flux linear actuator and motor. The results of experiments are compared with those of theoretical/analytical and numerical modelling.

  9. From Cells to Islands: An unified Model of Cellular Parallel Genetic Algorithms

    CERN Document Server

    Simoncini, David; Verel, Sébastien; Clergue, Manuel

    2008-01-01

    This paper presents the Anisotropic selection scheme for cellular Genetic Algorithms (cGA). This new scheme allows to enhance diversity and to control the selective pressure which are two important issues in Genetic Algorithms, especially when trying to solve difficult optimization problems. Varying the anisotropic degree of selection allows swapping from a cellular to an island model of parallel genetic algorithm. Measures of performances and diversity have been performed on one well-known problem: the Quadratic Assignment Problem which is known to be difficult to optimize. Experiences show that, tuning the anisotropic degree, we can find the accurate trade-off between cGA and island models to optimize performances of parallel evolutionary algorithms. This trade-off can be interpreted as the suitable degree of migration among subpopulations in a parallel Genetic Algorithm.

  10. PARALLEL ADAPTIVE MULTILEVEL SAMPLING ALGORITHMS FOR THE BAYESIAN ANALYSIS OF MATHEMATICAL MODELS

    KAUST Repository

    Prudencio, Ernesto

    2012-01-01

    In recent years, Bayesian model updating techniques based on measured data have been applied to many engineering and applied science problems. At the same time, parallel computational platforms are becoming increasingly more powerful and are being used more frequently by the engineering and scientific communities. Bayesian techniques usually require the evaluation of multi-dimensional integrals related to the posterior probability density function (PDF) of uncertain model parameters. The fact that such integrals cannot be computed analytically motivates the research of stochastic simulation methods for sampling posterior PDFs. One such algorithm is the adaptive multilevel stochastic simulation algorithm (AMSSA). In this paper we discuss the parallelization of AMSSA, formulating the necessary load balancing step as a binary integer programming problem. We present a variety of results showing the effectiveness of load balancing on the overall performance of AMSSA in a parallel computational environment.

  11. BSIRT: a block-iterative SIRT parallel algorithm using curvilinear projection model.

    Science.gov (United States)

    Zhang, Fa; Zhang, Jingrong; Lawrence, Albert; Ren, Fei; Wang, Xuan; Liu, Zhiyong; Wan, Xiaohua

    2015-03-01

    Large-field high-resolution electron tomography enables visualizing detailed mechanisms under global structure. As field enlarges, the distortions of reconstruction and processing time become more critical. Using the curvilinear projection model can improve the quality of large-field ET reconstruction, but its computational complexity further exacerbates the processing time. Moreover, there is no parallel strategy on GPU for iterative reconstruction method with curvilinear projection. Here we propose a new Block-iterative SIRT parallel algorithm with the curvilinear projection model (BSIRT) for large-field ET reconstruction, to improve the quality of reconstruction and accelerate the reconstruction process. We also develop some key techniques, including block-iterative method with the curvilinear projection, a scope-based data decomposition method and a page-based data transfer scheme to implement the parallelization of BSIRT on GPU platform. Experimental results show that BSIRT can improve the reconstruction quality as well as the speed of the reconstruction process.

  12. A global parallel model based design of experiments method to minimize model output uncertainty.

    Science.gov (United States)

    Bazil, Jason N; Buzzard, Gregory T; Rundell, Ann E

    2012-03-01

    Model-based experiment design specifies the data to be collected that will most effectively characterize the biological system under study. Existing model-based design of experiment algorithms have primarily relied on Fisher Information Matrix-based methods to choose the best experiment in a sequential manner. However, these are largely local methods that require an initial estimate of the parameter values, which are often highly uncertain, particularly when data is limited. In this paper, we provide an approach to specify an informative sequence of multiple design points (parallel design) that will constrain the dynamical uncertainty of the biological system responses to within experimentally detectable limits as specified by the estimated experimental noise. The method is based upon computationally efficient sparse grids and requires only a bounded uncertain parameter space; it does not rely upon initial parameter estimates. The design sequence emerges through the use of scenario trees with experimental design points chosen to minimize the uncertainty in the predicted dynamics of the measurable responses of the system. The algorithm was illustrated herein using a T cell activation model for three problems that ranged in dimension from 2D to 19D. The results demonstrate that it is possible to extract useful information from a mathematical model where traditional model-based design of experiments approaches most certainly fail. The experiments designed via this method fully constrain the model output dynamics to within experimentally resolvable limits. The method is effective for highly uncertain biological systems characterized by deterministic mathematical models with limited data sets. Also, it is highly modular and can be modified to include a variety of methodologies such as input design and model discrimination.

  13. Enhanced stability of layered phases in parallel hard spherocylinders due to addition of hard spheres

    NARCIS (Netherlands)

    Dogic, Z.; Frenkel, D.; Fraden, S.

    2000-01-01

    There is increasing evidence that entropy can induce microphase separation in binary fluid mixtures interacting through hard particle potentials. One such phase consists of alternating two-dimensional liquidlike layers of rods and spheres. We study the transition from a uniform miscible state to

  14. Double random phase spread spectrum spread space technique for secure parallel optical multiplexing with individual encryption key

    Science.gov (United States)

    Hennelly, B. M.; Javidi, B.; Sheridan, J. T.

    2005-09-01

    A number of methods have been recently proposed in the literature for the encryption of 2-D information using linear optical systems. In particular the double random phase encoding system has received widespread attention. This system uses two Random Phase Keys (RPK) positioned in the input spatial domain and the spatial frequency domain and if these random phases are described by statistically independent white noises then the encrypted image can be shown to be a white noise. Decryption only requires knowledge of the RPK in the frequency domain. The RPK may be implemented using a Spatial Light Modulators (SLM). In this paper we propose and investigate the use of SLMs for secure optical multiplexing. We show that in this case it is possible to encrypt multiple images in parallel and multiplex them for transmission or storage. The signal energy is effectively spread in the spatial frequency domain. As expected the number of images that can be multiplexed together and recovered without loss is proportional to the ratio of the input image and the SLM resolution. Many more images may be multiplexed with some loss in recovery. Furthermore each individual encryption is more robust than traditional double random phase encoding since decryption requires knowledge of both RPK and a lowpass filter in order to despread the spectrum and decrypt the image. Numerical simulations are presented and discussed.

  15. Error Modelling and Experimental Validation for a Planar 3-PPR Parallel Manipulator

    DEFF Research Database (Denmark)

    Wu, Guanglei; Bai, Shaoping; Kepler, Jørgen Asbøl

    2011-01-01

    In this paper, the positioning error of a 3-PPR planar parallel manipulator is studied with an error model and experimental validation. First, the displacement and workspace are analyzed. An error model considering both configuration errors and joint clearance errors is established. Using...... this model, the maximum positioning error was estimated for a U-shape PPR planar manipulator, the results being compared with the experimental measurements. It is found that the error distributions from the simulation is approximate to that of themeasurements....

  16. Error Modelling and Experimental Validation for a Planar 3-PPR Parallel Manipulator

    DEFF Research Database (Denmark)

    Wu, Guanglei; Bai, Shaoping; Kepler, Jørgen Asbøl

    2011-01-01

    In this paper, the positioning error of a 3-PPR planar parallel manipulator is studied with an error model and experimental validation. First, the displacement and workspace are analyzed. An error model considering both configuration errors and joint clearance errors is established. Using...... this model, the maximum positioning error was estimated for a U-shape PPR planar manipulator, the results being compared with the experimental measurements. It is found that the error distributions from the simulation is approximate to that of themeasurements....

  17. Error Modelling and Experimental Validation of a Planar 3-PPR Parallel Manipulator with Joint Clearances

    OpenAIRE

    Wu, Guanglei; Shaoping, Bai; Jørgen A., Kepler; Caro, Stéphane

    2012-01-01

    International audience; This paper deals with the error modelling and analysis of a 3-\\underline{P}PR planar parallel manipulator with joint clearances. The kinematics and the Cartesian workspace of the manipulator are analyzed. An error model is established with considerations of both configuration errors and joint clearances. Using this model, the upper bounds and distributions of the pose errors for this manipulator are established. The results are compared with experimental measurements a...

  18. Design and Implementation of “Many Parallel Task” Hybrid Subsurface Model

    Energy Technology Data Exchange (ETDEWEB)

    Agarwal, Khushbu; Chase, Jared M.; Schuchardt, Karen L.; Scheibe, Timothy D.; Palmer, Bruce J.; Elsethagen, Todd O.

    2011-11-01

    Continuum scale models have been used to study subsurface flow, transport, and reactions for many years. Recently, pore scale models, which operate at scales of individual soil grains, have been developed to more accurately model pore scale phenomena, such as precipitation, that may not be well represented at the continuum scale. However, particle-based models become prohibitively expensive for modeling realistic domains. Instead, we are developing a hybrid model that simulates the full domain at continuum scale and applies the pore model only to areas of high reactivity. The hybrid model uses a dimension reduction approach to formulate the mathematical exchange of information across scales. Since the location, size, and number of pore regions in the model varies, an adaptive Pore Generator is being implemented to define pore regions at each iteration. A fourth code will provide data transformation from the pore scale back to the continuum scale. These components are coupled into a single hybrid model using the SWIFT workflow system. Our hybrid model workflow simulates a kinetic controlled mixing reaction in which multiple pore-scale simulations occur for every continuum scale timestep. Each pore-scale simulation is itself parallel, thus exhibiting multi-level parallelism. Our workflow manages these multiple parallel tasks simultaneously, with the number of tasks changing across iterations. It also supports dynamic allocation of job resources and visualization processing at each iteration. We discuss the design, implementation and challenges associated with building a scalable, Many Parallel Task, hybrid model to run efficiently on thousands to tens of thousands of processors.

  19. MPI Parallel Algorithm in Satellite Gravity Field Model Inversion on the Basis of Least Square Method

    Directory of Open Access Journals (Sweden)

    ZHOU Hao

    2015-08-01

    Full Text Available In order to solve the intensive computing tasks and high memory demand problem in satellite gravity field model inversion on the basis of huge amounts of satellite gravity observations, the parallel algorithm for high truncated order and degree satellite gravity field model inversion with least square method on the basis of MPI was introduced. After analyzing the time and space complexity of each step in the solving flow, the parallel I/O, block-organized storage and block-organized computation algorithm on the basis of MPI are introduced to design the parallel algorithm for building design matrix, establishing and solving normal equation, and the simulation results indicate that the parallel efficiency of building design matrix, establishing and solving normal equation can reach to 95%, 68%and 63% respectively. In addition, on the basis of GOCE simulated orbits and radial disturbance gravity gradient data(518 400 epochs in total, two earth gravity models truncated to degree and order 120, 240 are inversed, and the relative computation time and memory demand are only about 40 minutes and 7 hours, 290 MB and 1.57 GB respectively. Eventually, a simulation numerical calculation for earth gravity field model inversion with the simulation data, which has the equivalent noise level with GRACE and GOCE mission, is conducted. The accuracy of inversion model has a good consistent with current released model, and the combined mode can complement the spectral information of each individual mission, which indicates that the parallel algorithm in this paper can be applied to inverse the high truncated degree and order earth gravity model efficiently and stably.

  20. Global SH-wave propagation in a 2D whole Moon model using the parallel hybrid PSM/FDM method

    Science.gov (United States)

    Jiang, Xianghua; Wang, Yanbin; Qin, Yanfang; Takenaka, Hiroshi

    2015-06-01

    We present numerical modeling of SH-wave propagation for the recently proposed whole Moon model and try to improve our understanding of lunar seismic wave propagation. We use a hybrid PSM/FDM method on staggered grids to solve the wave equations and implement the calculation on a parallel PC cluster to improve the computing efficiency. Features of global SH-wave propagation are firstly discussed for a 100-km shallow and 900-km deep moonquakes, respectively. Effects of frequency range and lateral variation of crust thickness are then investigated with various models. Our synthetic waveforms are finally compared with observed Apollo data to show the features of wave propagation that were produced by our model and those not reproduced by our models. Our numerical modeling show that the low-velocity upper crust plays significant role in the development of reverberating wave trains. Increasing frequency enhances the strength and duration of the reverberations. Surface multiples dominate wavefields for shallow event. Core-mantle reflections can be clearly identified for deep event at low frequency. The layered whole Moon model and the low-velocity upper crust produce the reverberating wave trains following each phases consistent with observation. However, more realistic Moon model should be considered in order to explain the strong and slow decay scattering between various phases shown on observation data.

  1. Radar cross section of dipole phased arrays with parallel feed network

    CERN Document Server

    Singh, Hema; Jha, Rakesh Mohan

    2016-01-01

    This book presents the detailed analytical formulation for the RCS of parallel-fed linear dipole array in the presence of mutual coupling. The radar cross section (RCS) of an object represents its electromagnetic (EM) scattering properties for a given incident wave. The analysis of scattered field is critical in military and defence arenas, especially while designing low-observable platforms. It is well-known that the presence of an antenna/array on the target influences its echo area significantly. The primary cause for such scattering of the incident signals is reflection that occurs within the antenna aperture and its feed network. In this book, the RCS estimation is done based on the signal path within the antenna system. The scattered field is expressed in terms of array design parameters including the reflection and transmission coefficients. The computed results show the variation in the RCS pattern with and without mutual coupling. The effect of finite dipole-length, inter-element spacing, scan angle,...

  2. 4D MR phase and magnitude segmentations with GPU parallel computing.

    Science.gov (United States)

    Bergen, Robert V; Lin, Hung-Yu; Alexander, Murray E; Bidinosti, Christopher P

    2015-01-01

    The increasing size and number of data sets of large four dimensional (three spatial, one temporal) magnetic resonance (MR) cardiac images necessitates efficient segmentation algorithms. Analysis of phase-contrast MR images yields cardiac flow information which can be manipulated to produce accurate segmentations of the aorta. Phase contrast segmentation algorithms are proposed that use simple mean-based calculations and least mean squared curve fitting techniques. The initial segmentations are generated on a multi-threaded central processing unit (CPU) in 10 seconds or less, though the computational simplicity of the algorithms results in a loss of accuracy. A more complex graphics processing unit (GPU)-based algorithm fits flow data to Gaussian waveforms, and produces an initial segmentation in 0.5 seconds. Level sets are then applied to a magnitude image, where the initial conditions are given by the previous CPU and GPU algorithms. A comparison of results shows that the GPU algorithm appears to produce the most accurate segmentation.

  3. On the adequation of dynamic modelling and control of parallel kinematic manipulators.

    OpenAIRE

    Ozgür, Erol; Andreff, Nicolas; Martinet, Philippe

    2010-01-01

    International audience; This paper addresses the problem of controlling the dynamics of parallel kinematic manipulators from a global point of view, where modeling, sensing and control are considered simultaneously. The methodology is presented through the examples of the Gough-Stewart manipulator and the Quattro robot.

  4. All-pairs Shortest Path Algorithm based on MPI+CUDA Distributed Parallel Programming Model

    Directory of Open Access Journals (Sweden)

    Qingshuang Wu

    2013-12-01

    Full Text Available In view of the problem that computing shortest paths in a graph is a complex and time-consuming process, and the traditional algorithm that rely on the CPU as computing unit solely can't meet the demand of real-time processing, in this paper, we present an all-pairs shortest paths algorithm using MPI+CUDA hybrid programming model, which can take use of the overwhelming computing power of the GPU cluster to speed up the processing. This proposed algorithm can combine the advantages of MPI and CUDA programming model, and can realize two-level parallel computing. In the cluster-level, we take use of the MPI programming model to achieve a coarse-grained parallel computing between the computational nodes of the GPU cluster. In the node-level, we take use of the CUDA programming model to achieve a GPU-accelerated fine grit parallel computing in each computational node internal. The experimental results show that the MPI+CUDA-based parallel algorithm can take full advantage of the powerful computing capability of the GPU cluster, and can achieve about hundreds of time speedup; The whole algorithm has good computing performance, reliability and scalability, and it is able to meet the demand of real-time processing of massive spatial shortest path analysis

  5. Teaching Scientific Computing: A Model-Centered Approach to Pipeline and Parallel Programming with C

    Directory of Open Access Journals (Sweden)

    Vladimiras Dolgopolovas

    2015-01-01

    Full Text Available The aim of this study is to present an approach to the introduction into pipeline and parallel computing, using a model of the multiphase queueing system. Pipeline computing, including software pipelines, is among the key concepts in modern computing and electronics engineering. The modern computer science and engineering education requires a comprehensive curriculum, so the introduction to pipeline and parallel computing is the essential topic to be included in the curriculum. At the same time, the topic is among the most motivating tasks due to the comprehensive multidisciplinary and technical requirements. To enhance the educational process, the paper proposes a novel model-centered framework and develops the relevant learning objects. It allows implementing an educational platform of constructivist learning process, thus enabling learners’ experimentation with the provided programming models, obtaining learners’ competences of the modern scientific research and computational thinking, and capturing the relevant technical knowledge. It also provides an integral platform that allows a simultaneous and comparative introduction to pipelining and parallel computing. The programming language C for developing programming models and message passing interface (MPI and OpenMP parallelization tools have been chosen for implementation.

  6. Parallel plate model for trabecular bone exhibits volume fraction-dependent bias

    NARCIS (Netherlands)

    J.S. Day (Judd); M. Ding; A. Odgaard; D.R. Sumner (Dale); I. Hvid (Ivan); H.H. Weinans (Harrie)

    2000-01-01

    textabstractUnbiased stereological methods were used in conjunction with microcomputed tomographic (micro-CT) scans of human and animal bone to investigate errors created when the parallel plate model was used to calculate morphometric parameters. Bone samples were obtained from the human proximal t

  7. PVeStA: A Parallel Statistical Model Checking and Quantitative Analysis Tool

    KAUST Repository

    AlTurki, Musab

    2011-01-01

    Statistical model checking is an attractive formal analysis method for probabilistic systems such as, for example, cyber-physical systems which are often probabilistic in nature. This paper is about drastically increasing the scalability of statistical model checking, and making such scalability of analysis available to tools like Maude, where probabilistic systems can be specified at a high level as probabilistic rewrite theories. It presents PVeStA, an extension and parallelization of the VeStA statistical model checking tool [10]. PVeStA supports statistical model checking of probabilistic real-time systems specified as either: (i) discrete or continuous Markov Chains; or (ii) probabilistic rewrite theories in Maude. Furthermore, the properties that it can model check can be expressed in either: (i) PCTL/CSL, or (ii) the QuaTEx quantitative temporal logic. As our experiments show, the performance gains obtained from parallelization can be very high. © 2011 Springer-Verlag.

  8. Sparse Probabilistic Parallel Factor Analysis for the Modeling of PET and Task-fMRI Data

    DEFF Research Database (Denmark)

    Beliveau, Vincent; Papoutsakis, Georgios; Hinrich, Jesper Løve

    2017-01-01

    interpretability of the results. Here we propose a variational Bayesian parallel factor analysis (VB-PARAFAC) model and an extension with sparse priors (SP-PARAFAC). Notably, our formulation admits time and subject specific noise modeling as well as subject specific offsets (i.e., mean values). We confirmed...... the validity of the models through simulation and performed exploratory analysis of positron emission tomography (PET) and functional magnetic resonance imaging (fMRI) data. Although more constrained, the proposed models performed similarly to more flexible models in approximating the PET data, which supports......Modern datasets are often multiway in nature and can contain patterns common to a mode of the data (e.g. space, time, and subjects). Multiway decomposition such as parallel factor analysis (PARAFAC) take into account the intrinsic structure of the data, and sparse versions of these methods improve...

  9. Parallelization of a Quantum-Classic Hybrid Model For Nanoscale Semiconductor Devices

    OpenAIRE

    2011-01-01

    The expensive reengineering of the sequential software and the difficult parallel programming are two of the many technical and economic obstacles to the wide use of HPC. We investigate the chance to improve in a rapid way the performance of a numerical serial code for the simulation of the transport of a charged carriers in a Double-Gate MOSFET. We introduce the Drift-Diffusion-Schrödinger-Poisson (DDSP) model and we study a rapid parallelization strategy of the numerical procedure on shared...

  10. Modeling of Electromagnetic Fields in Parallel-Plane Structures: A Unified Contour-Integral Approach

    Directory of Open Access Journals (Sweden)

    M. Stumpf

    2017-04-01

    Full Text Available A unified reciprocity-based modeling approach for analyzing electromagnetic fields in dispersive parallel-plane structures of arbitrary shape is described. It is shown that the use of the reciprocity theorem of the time-convolution type leads to a global contour-integral interaction quantity from which novel both time- and frequency-domain numerical schemes can be arrived at. Applications of the numerical method concerning the time-domain radiated interference and susceptibility of parallel-plane structures are discussed and illustrated on numerical examples.

  11. Model of stacked long Josephson junctions: Parallel algorithm and numerical results in case of weak coupling

    Science.gov (United States)

    Zemlyanaya, E. V.; Bashashin, M. V.; Rahmonov, I. R.; Shukrinov, Yu. M.; Atanasova, P. Kh.; Volokhova, A. V.

    2016-10-01

    We consider a model of system of long Josephson junctions (LJJ) with inductive and capacitive coupling. Corresponding system of nonlinear partial differential equations is solved by means of the standard three-point finite-difference approximation in the spatial coordinate and utilizing the Runge-Kutta method for solution of the resulting Cauchy problem. A parallel algorithm is developed and implemented on a basis of the MPI (Message Passing Interface) technology. Effect of the coupling between the JJs on the properties of LJJ system is demonstrated. Numerical results are discussed from the viewpoint of effectiveness of parallel implementation.

  12. Developing a Massively Parallel Forward Projection Radiography Model for Large-Scale Industrial Applications

    Energy Technology Data Exchange (ETDEWEB)

    Bauerle, Matthew [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2014-08-01

    This project utilizes Graphics Processing Units (GPUs) to compute radiograph simulations for arbitrary objects. The generation of radiographs, also known as the forward projection imaging model, is computationally intensive and not widely utilized. The goal of this research is to develop a massively parallel algorithm that can compute forward projections for objects with a trillion voxels (3D pixels). To achieve this end, the data are divided into blocks that can each t into GPU memory. The forward projected image is also divided into segments to allow for future parallelization and to avoid needless computations.

  13. A PARALLEL NUMERICAL MODEL OF SOLVING N-S EQUATIONS BY USING SEQUENTIAL REGULARIZATION METHOD

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    A parallel numerical model was established for solving the Navier-Stokes equations by using Sequential Regularization Method (SRM). The computational domain is decomposed into P sub-domains in which the difference formulae were obtained from the governing equations. The data were exchannged at the virtual boundary of sub-domains in parallel computation. The close-channel cavity flow was solved by the implicit method. The driven square cavity flow was solved by the explicit method. The results were compared well those given by Ghia.

  14. Parallelization of a Quantum-Classic Hybrid Model For Nanoscale Semiconductor Devices

    Directory of Open Access Journals (Sweden)

    Oscar Salas

    2011-07-01

    Full Text Available The expensive reengineering of the sequential software and the difficult parallel programming are two of the many technical and economic obstacles to the wide use of HPC. We investigate the chance to improve in a rapid way the performance of a numerical serial code for the simulation of the transport of a charged carriers in a Double-Gate MOSFET. We introduce the Drift-Diffusion-Schrödinger-Poisson (DDSP model and we study a rapid parallelization strategy of the numerical procedure on shared memory architectures.

  15. Rasterizing geological models for parallel finite difference simulation using seismic simulation as an example

    Science.gov (United States)

    Zehner, Björn; Hellwig, Olaf; Linke, Maik; Görz, Ines; Buske, Stefan

    2016-01-01

    3D geological underground models are often presented by vector data, such as triangulated networks representing boundaries of geological bodies and geological structures. Since models are to be used for numerical simulations based on the finite difference method, they have to be converted into a representation discretizing the full volume of the model into hexahedral cells. Often the simulations require a high grid resolution and are done using parallel computing. The storage of such a high-resolution raster model would require a large amount of storage space and it is difficult to create such a model using the standard geomodelling packages. Since the raster representation is only required for the calculation, but not for the geometry description, we present an algorithm and concept for rasterizing geological models on the fly for the use in finite difference codes that are parallelized by domain decomposition. As a proof of concept we implemented a rasterizer library and integrated it into seismic simulation software that is run as parallel code on a UNIX cluster using the Message Passing Interface. We can thus run the simulation with realistic and complicated surface-based geological models that are created using 3D geomodelling software, instead of using a simplified representation of the geological subsurface using mathematical functions or geometric primitives. We tested this set-up using an example model that we provide along with the implemented library.

  16. Parallel processing optimization strategy based on MapReduce model in cloud storage environment

    Science.gov (United States)

    Cui, Jianming; Liu, Jiayi; Li, Qiuyan

    2017-05-01

    Currently, a large number of documents in the cloud storage process employed the way of packaging after receiving all the packets. From the local transmitter this stored procedure to the server, packing and unpacking will consume a lot of time, and the transmission efficiency is low as well. A new parallel processing algorithm is proposed to optimize the transmission mode. According to the operation machine graphs model work, using MPI technology parallel execution Mapper and Reducer mechanism. It is good to use MPI technology to implement Mapper and Reducer parallel mechanism. After the simulation experiment of Hadoop cloud computing platform, this algorithm can not only accelerate the file transfer rate, but also shorten the waiting time of the Reducer mechanism. It will break through traditional sequential transmission constraints and reduce the storage coupling to improve the transmission efficiency.

  17. Modelling and experimental evaluation of parallel connected lithium ion cells for an electric vehicle battery system

    Science.gov (United States)

    Bruen, Thomas; Marco, James

    2016-04-01

    Variations in cell properties are unavoidable and can be caused by manufacturing tolerances and usage conditions. As a result of this, cells connected in series may have different voltages and states of charge that limit the energy and power capability of the complete battery pack. Methods of removing this energy imbalance have been extensively reported within literature. However, there has been little discussion around the effect that such variation has when cells are connected electrically in parallel. This work aims to explore the impact of connecting cells, with varied properties, in parallel and the issues regarding energy imbalance and battery management that may arise. This has been achieved through analysing experimental data and a validated model. The main results from this study highlight that significant differences in current flow can occur between cells within a parallel stack that will affect how the cells age and the temperature distribution within the battery assembly.

  18. Partial Overhaul and Initial Parallel Optimization of KINETICS, a Coupled Dynamics and Chemistry Atmosphere Model

    Science.gov (United States)

    Nguyen, Howard; Willacy, Karen; Allen, Mark

    2012-01-01

    KINETICS is a coupled dynamics and chemistry atmosphere model that is data intensive and computationally demanding. The potential performance gain from using a supercomputer motivates the adaptation from a serial version to a parallelized one. Although the initial parallelization had been done, bottlenecks caused by an abundance of communication calls between processors led to an unfavorable drop in performance. Before starting on the parallel optimization process, a partial overhaul was required because a large emphasis was placed on streamlining the code for user convenience and revising the program to accommodate the new supercomputers at Caltech and JPL. After the first round of optimizations, the partial runtime was reduced by a factor of 23; however, performance gains are dependent on the size of the data, the number of processors requested, and the computer used.

  19. Development Of A Parallel Performance Model For The THOR Neutral Particle Transport Code

    Energy Technology Data Exchange (ETDEWEB)

    Yessayan, Raffi; Azmy, Yousry; Schunert, Sebastian

    2017-02-01

    The THOR neutral particle transport code enables simulation of complex geometries for various problems from reactor simulations to nuclear non-proliferation. It is undergoing a thorough V&V requiring computational efficiency. This has motivated various improvements including angular parallelization, outer iteration acceleration, and development of peripheral tools. For guiding future improvements to the code’s efficiency, better characterization of its parallel performance is useful. A parallel performance model (PPM) can be used to evaluate the benefits of modifications and to identify performance bottlenecks. Using INL’s Falcon HPC, the PPM development incorporates an evaluation of network communication behavior over heterogeneous links and a functional characterization of the per-cell/angle/group runtime of each major code component. After evaluating several possible sources of variability, this resulted in a communication model and a parallel portion model. The former’s accuracy is bounded by the variability of communication on Falcon while the latter has an error on the order of 1%.

  20. Langley's CSI evolutionary model: Phase O

    Science.gov (United States)

    Belvin, W. Keith; Elliott, Kenny B.; Horta, Lucas G.; Bailey, Jim P.; Bruner, Anne M.; Sulla, Jeffrey L.; Won, John; Ugoletti, Roberto M.

    1991-01-01

    A testbed for the development of Controls Structures Interaction (CSI) technology to improve space science platform pointing is described. The evolutionary nature of the testbed will permit the study of global line-of-sight pointing in phases 0 and 1, whereas, multipayload pointing systems will be studied beginning with phase 2. The design, capabilities, and typical dynamic behavior of the phase 0 version of the CSI evolutionary model (CEM) is documented for investigator both internal and external to NASA. The model description includes line-of-sight pointing measurement, testbed structure, actuators, sensors, and real time computers, as well as finite element and state space models of major components.

  1. Advanced boundary electrode modeling for tES and parallel tES/EEG

    CERN Document Server

    Agsten, Britte; Pursiainen, Sampsa; Wolters, Carsten H

    2016-01-01

    This paper explores advanced electrode modeling in the context of separate and parallel transcranial electrical stimulation (tES) and electroencephalography (EEG) measurements. We focus on boundary condition based approaches that do not necessitate adding auxiliary elements, e.g. sponges, to the computational domain. In particular, we investigate the complete electrode model (CEM) which incorporates a detailed description of the skin-electrode interface including its contact surface, impedance and normal current distribution. The CEM can be applied for both tES and EEG electrodes which is advantageous when a parallel system is used. In comparison to the CEM, we test two important reduced approaches: the gap model (GAP) and the point electrode model (PEM). We aim to find out the differences of these approaches for a realistic numerical setting based on the stimulation of the auditory cortex. The results obtained suggest, among other things, that GAP and GAP/PEM are sufficiently accurate for the practical appli...

  2. A piloted comparison of elastic and rigid blade-element rotor models using parallel processing technology

    Science.gov (United States)

    Hill, Gary; Du Val, Ronald W.; Green, John A.; Huynh, Loc C.

    1990-01-01

    A piloted comparison of rigid and aeroelastic blade-element rotor models was conducted at the Crew Station Research and Development Facility (CSRDF) at Ames Research Center. FLIGHTLAB, a new simulation development and analysis tool, was used to implement these models in real time using parallel processing technology. Pilot comments and quantitative analysis performed both on-line and off-line confirmed that elastic degrees of freedom significantly affect perceived handling qualities. Trim comparisons show improved correlation with flight test data when elastic modes are modeled. The results demonstrate the efficiency with which the mathematical modeling sophistication of existing simulation facilities can be upgraded using parallel processing, and the importance of these upgrades to simulation fidelity.

  3. Space-frequency analysis with parallel computing in a phase-sensitive optical time-domain reflectometer distributed sensor.

    Science.gov (United States)

    Hui, Xiaonan; Ye, Taihang; Zheng, Shilie; Zhou, Jinhai; Chi, Hao; Jin, Xiaofeng; Zhang, Xianmin

    2014-10-01

    For a phase-sensitive optical time-domain reflectometer (ϕ-OTDR) distributed sensor system, space-frequency analysis can reduce the false alarm by analyzing the frequency distribution compared with the traditional difference value method. We propose a graphics processing unit (GPU)-based parallel computing method to perform multichannel fast Fourier transform (FFT) and realize the real-time space-frequency analysis. The experiment results show that the time taken by the multichannel FFT decreased considerably based on this GPU parallel computing. The method can be completed with a sensing fiber up to 16 km long and an entry-level GPU. Meanwhile, the GPU can reduce the computing load of the central processing unit from 70% down to less than 20%. We carried out an experiment on a two-point space-frequency analysis, and the results clearly and simultaneously show the vibration point locations and frequency components. The sensor system outputs the real-time space-frequency spectra continuously with a spatial resolution of 16.3 m and frequency resolution of 2.25 Hz.

  4. Phase diagram of a truncated tetrahedral model

    Science.gov (United States)

    Krcmar, Roman; Gendiar, Andrej; Nishino, Tomotoshi

    2016-08-01

    Phase diagram of a discrete counterpart of the classical Heisenberg model, the truncated tetrahedral model, is analyzed on the square lattice, when the interaction is ferromagnetic. Each spin is represented by a unit vector that can point to one of the 12 vertices of the truncated tetrahedron, which is a continuous interpolation between the tetrahedron and the octahedron. Phase diagram of the model is determined by means of the statistical analog of the entanglement entropy, which is numerically calculated by the corner transfer matrix renormalization group method. The obtained phase diagram consists of four different phases, which are separated by five transition lines. In the parameter region, where the octahedral anisotropy is dominant, a weak first-order phase transition is observed.

  5. Hybrid model for QCD deconfining phase boundary

    Science.gov (United States)

    Srivastava, P. K.; Singh, C. P.

    2012-06-01

    Intensive search for a proper and realistic equations of state (EOS) is still continued for studying the phase diagram existing between quark gluon plasma (QGP) and hadron gas (HG) phases. Lattice calculations provide such EOS for the strongly interacting matter at finite temperature (T) and vanishing baryon chemical potential (μB). These calculations are of limited use at finite μB due to the appearance of notorious sign problem. In the recent past, we had constructed a hybrid model description for the QGP as well as HG phases where we make use of a new excluded-volume model for HG and a thermodynamically-consistent quasiparticle model for the QGP phase and used them further to get QCD phase boundary and a critical point. Since then many lattice calculations have appeared showing various thermal and transport properties of QCD matter at finite T and μB=0. We test our hybrid model by reproducing the entire data for strongly interacting matter and predict our results at finite μB so that they can be tested in future. Finally we demonstrate the utility of the model in fixing the precise location, the order of the phase transition and the nature of CP existing on the QCD phase diagram. We thus emphasize the suitability of the hybrid model as formulated here in providing a realistic EOS for the strongly interacting matter.

  6. Phases and phase transitions in the algebraic microscopic shell model

    Directory of Open Access Journals (Sweden)

    Georgieva A. I.

    2016-01-01

    Full Text Available We explore the dynamical symmetries of the shell model number conserving algebra, which define three types of pairing and quadrupole phases, with the aim to obtain the prevailing phase or phase transition for the real nuclear systems in a single shell. This is achieved by establishing a correspondence between each of the pairing bases with the Elliott’s SU(3 basis that describes collective rotation of nuclear systems. This allows for a complete classification of the basis states of different number of particles in all the limiting cases. The probability distribution of the SU(3 basis states within theirs corresponding pairing states is also obtained. The relative strengths of dynamically symmetric quadrupole-quadrupole interaction in respect to the isoscalar, isovector and total pairing interactions define a control parameter, which estimates the importance of each term of the Hamiltonian in the correct reproduction of the experimental data for the considered nuclei.

  7. On dynamic loads in parallel shaft transmissions. 1: Modelling and analysis

    Science.gov (United States)

    Lin, Edward Hsiang-Hsi; Huston, Ronald L.; Coy, John J.

    1987-01-01

    A model of a simple parallel-shaft, spur-gear transmission is presented. The model is developed to simulate dynamic loads in power transmissions. Factors affecting these loads are identified. Included are shaft stiffness, local compliance due to contact stress, load sharing, and friction. Governing differential equations are developed and a solution procedure is outlined. A parameter study of the solutions is presented in NASA TM-100181 (AVSCOM TM-87-C-3).

  8. The Modelling of Mechanism with Parallel Kinematic Structure in Software Matlab/Simulink

    Directory of Open Access Journals (Sweden)

    Vladimir Bulej

    2016-09-01

    Full Text Available The article deals with the preparation of simulation model of mechanism with parallel kinematic structure called hexapod as an electro-mechanical system in software MATLAB/Simulink. The simulation model is composed from functional blocks represented each part of mechanism’s kinematic structure with certain properties. The results should be used for further simulation of its behaviour as well as for generating of control algorithms for real functional prototype.

  9. The Finite Element Analysis for Parallel-wire Capacitance Probe in Small Diameter Two-phase Flow Pipe

    Institute of Scientific and Technical Information of China (English)

    ZHAI Lusheng; JIN Ningde; GAO Zhongke; HUANG Xu

    2013-01-01

    This paper presents a novel capacitance probe,i.e.,parallel-wire capacitance probe (PWCP),for two-phase flow measurement.Using finite element method (FEM),the sensitivity field of the PWCP is investigated and the optimum sensor geometry is determiend in term of the characterisitc parameters.Then,the response of PWCP for the oil-water stratified fiow is calculated,and it is found the PWCP has better linearity and sensitivity to the variation of water-layer thickness,and is almost independant of the angle between the oil-water interface and the sensor electrode.Finally,the static experiment for oil-water stratified flow is carried out and the calibration method of liquid holdup is presented.

  10. Parallel scripting for improved performance and productivity in climate model postprocessing, integration, and analysis.

    Science.gov (United States)

    Wilde, M.; Mickelson, S. A.; Jacob, R. L.; Zamboni, L.; Elliott, J.; Yan, E.

    2012-12-01

    Climate models continually increase both in their resolution and structural complexity, resulting in multi-terabyte model outputs. This volume of data overwhelms the current model processing procedures that are used to derive climate averages, perform analysis, produce visualizations, and integrate climate models with other datasets. We describe here the application of a new programming model - implicitly parallel functional dataflow scripting - for expressing the processing steps needed to post-process, analyze, integrate, and visualize the output of climate models. This programming model, implemented in the Swift parallel scripting language, provides a many-fold speedup of processing while reducing the amount of manual effort involved. It is characterized by: - implicit, pervasive parallelism, enabling scientists to leverage diverse parallel resources with reduced programming complexity; - abstraction of computing location and resource types, and automation of high performance data transport; - compact, uniform representation for the processing protocols and procedures of a research group or community under which virtually all existing software tools and languages can be coordinated; and - tracking of the provenance of derived data objects, providing a means for diagnostic interrogation and assessment of computational results. We report here on four model-analysis and/or data integration applications of this approach: 1) Re-coding of the community-standard diagnostic packages used to post-process data from the Community Atmosphere Model and the Parallel Ocean Program in Swift. This has resulted in valuable speedups in model analysis for these heavily used procedures. 2) Processing of model output from HiRAM, the GFDL global HIgh Resolution Atmospheric Model, automating and parallelizing post-processing steps that have in the past been both manually and computationally intensive. Swift automatically processesed 50 HiRAM realizations comprising over 50TB of model

  11. PHASE CHAOS IN THE DISCRETE KURAMOTO MODEL

    DEFF Research Database (Denmark)

    Maistrenko, V.; Vasylenko, A.; Maistrenko, Y.;

    2010-01-01

    The paper describes the appearance of a novel, high-dimensional chaotic regime, called phase chaos, in a time-discrete Kuramoto model of globally coupled phase oscillators. This type of chaos is observed at small and intermediate values of the coupling strength. It arises from the nonlinear inter...

  12. Parallel Implementation of Dispersive Tsunami Wave Modeling with a Nesting Algorithm for the 2011 Tohoku Tsunami

    Science.gov (United States)

    Baba, Toshitaka; Takahashi, Narumi; Kaneda, Yoshiyuki; Ando, Kazuto; Matsuoka, Daisuke; Kato, Toshihiro

    2015-12-01

    Because of improvements in offshore tsunami observation technology, dispersion phenomena during tsunami propagation have often been observed in recent tsunamis, for example the 2004 Indian Ocean and 2011 Tohoku tsunamis. The dispersive propagation of tsunamis can be simulated by use of the Boussinesq model, but the model demands many computational resources. However, rapid progress has been made in parallel computing technology. In this study, we investigated a parallelized approach for dispersive tsunami wave modeling. Our new parallel software solves the nonlinear Boussinesq dispersive equations in spherical coordinates. A variable nested algorithm was used to increase spatial resolution in the target region. The software can also be used to predict tsunami inundation on land. We used the dispersive tsunami model to simulate the 2011 Tohoku earthquake on the Supercomputer K. Good agreement was apparent between the dispersive wave model results and the tsunami waveforms observed offshore. The finest bathymetric grid interval was 2/9 arcsec (approx. 5 m) along longitude and latitude lines. Use of this grid simulated tsunami soliton fission near the Sendai coast. Incorporating the three-dimensional shape of buildings and structures led to improved modeling of tsunami inundation.

  13. Modeling and characterization of multilayered d 15 mode piezoelectric energy harvesters in series and parallel connections

    Science.gov (United States)

    Zhu, Y. K.; Yu, Y. G.; Li, L.; Jiang, T.; Wang, X. Y.; Zheng, X. J.

    2016-07-01

    A Timoshenko beam model combined with piezoelectric constitutive equations and an electrical model was proposed to describe the energy harvesting performances of multilayered d 15 mode PZT-51 piezoelectric bimorphs in series and parallel connections. The effect of different clamped conditions was considered for non-piezoelectric and piezoelectric layers in the theoretical model. The frequency dependences of output peak voltage and power at different load resistances and excitation voltages were studied theoretically, and the results were verified by finite element modeling (FEM) simulation and experimental measurements. Results show that the theoretical model considering different clamped conditions for non-piezoelectric and piezoelectric layers could make a reliable prediction for the energy harvesting performances of multilayered d 15 mode piezoelectric bimorphs. The multilayered d 15 mode piezoelectric bimorph in a series connection exhibits a higher output peak voltage and power than that of a parallel connection at a load resistance of 1 MΩ. A criterion for choosing a series or parallel connection for a multilayered d 15 mode piezoelectric bimorph is dependent on the comparison of applied load resistance with the critical resistance of about 55 kΩ. The proposed model may provide some useful guidelines for the design and performance optimization of d 15 mode piezoelectric energy harvesters.

  14. The comfortable driving model revisited: Traffic phases and phase transitions

    CERN Document Server

    Knorr, Florian

    2013-01-01

    We study the spatiotemporal patterns resulting from different boundary conditions for a microscopic traffic model and contrast it with empirical results. By evaluating the time series of local measurements, the local traffic states are assigned to the different traffic phases of Kerner's three-phase traffic theory. For this classification we use the rule-based FOTO-method, which provides `hard' rules for this assignment. Using this approach, our analysis shows that the model is indeed able to reproduce three qualitatively different traffic phases: free flow (F), synchronized traffic (S), and wide moving jams (J). In addition, we investigate the likelihood of transitions between the three traffic phases. We show that a transition from free flow (F) to a wide moving jam (J) often involves an intermediate transition; first from free flow F to synchronized flow S and then from synchronized flow to a wide moving jam. This is supported by the fact that the so called F->S transition (from free flow to synchronized t...

  15. Modeling phase noise in multifunction subassemblies.

    Science.gov (United States)

    Driscoll, Michael

    2012-03-01

    Obtaining requisite phase noise performance in hardware containing multifunction circuitry requires accurate modeling of the phase noise characteristics of each signal path component, including both absolute (oscillator) and residual (non-oscillator) circuit contributors. This includes prediction of both static and vibration-induced phase noise. The model (usually in spreadsheet form) is refined as critical components are received and evaluated. Additive (KTBF) phase noise data can be reasonably estimated, based on device drive level and noise figure. However, accurate determination of component near-carrier (multiplicative) and vibration-induced noise usually must be determined via measurement. The model should also include the effects of noise introduced by IC voltage regulators and properly discriminate between common versus independent signal path residual noise contributors. The modeling can be easily implemented using a spreadsheet.

  16. A primitive kinetic-fluid model for quasi-parallel propagating magnetohydrodynamic waves

    Energy Technology Data Exchange (ETDEWEB)

    Nariyuki, Y. [Faculty of Human Development, University of Toyama, 3190 Toyama City, Toyama 930-8555 (Japan); Saito, S. [Graduate School of Science, Nagoya University, Nagoya, Aichi 464-8601 (Japan); Umeda, T. [Solar-Terrestrial Environment Laboratory, Nagoya University, Nagoya, Aichi 464-8601 (Japan)

    2013-07-15

    The extension and limitation of the existing one-dimensional kinetic-fluid model (Vlasov-MHD (magnetohydrodynamic) model), which has been used to analyze parametric instabilities of parallel propagating Alfvén waves, are discussed. The inconsistency among the given velocity distribution functions in the past studies is resolved through the systematic derivation of the multi-dimensional Vlasov-MHD model. The linear dispersion analysis of the present model indicates that the collisionless damping of the slow modes is adequately evaluated in low beta plasmas, although the deviation between the present model and the full-Vlasov theory increases with increasing plasma beta and increasing propagation angle. This is because the transit-time damping is not correctly evaluated in the present model. It is also shown that the ponderomotive density fluctuations associated with the envelope-modulated quasi-parallel propagating Alfvén waves derived from the present model is not consistent with those derived from the other models such as the Landau-fluid model, except for low beta plasmas. The result indicates the present model would be useful to understand the linear and nonlinear development of the Alfvénic turbulence in the inner heliosphere, whose condition is relatively low beta, while the existing model and the present model are insufficient to discuss the parametric instabilities of Alfvén waves in high beta plasmas and the obliquely propagating waves.

  17. Parallelizing Backpropagation Neural Network Using MapReduce and Cascading Model.

    Science.gov (United States)

    Liu, Yang; Jing, Weizhe; Xu, Lixiong

    2016-01-01

    Artificial Neural Network (ANN) is a widely used algorithm in pattern recognition, classification, and prediction fields. Among a number of neural networks, backpropagation neural network (BPNN) has become the most famous one due to its remarkable function approximation ability. However, a standard BPNN frequently employs a large number of sum and sigmoid calculations, which may result in low efficiency in dealing with large volume of data. Therefore to parallelize BPNN using distributed computing technologies is an effective way to improve the algorithm performance in terms of efficiency. However, traditional parallelization may lead to accuracy loss. Although several complements have been done, it is still difficult to find out a compromise between efficiency and precision. This paper presents a parallelized BPNN based on MapReduce computing model which supplies advanced features including fault tolerance, data replication, and load balancing. And also to improve the algorithm performance in terms of precision, this paper creates a cascading model based classification approach, which helps to refine the classification results. The experimental results indicate that the presented parallelized BPNN is able to offer high efficiency whilst maintaining excellent precision in enabling large-scale machine learning.

  18. Parallelizing Backpropagation Neural Network Using MapReduce and Cascading Model

    Directory of Open Access Journals (Sweden)

    Yang Liu

    2016-01-01

    Full Text Available Artificial Neural Network (ANN is a widely used algorithm in pattern recognition, classification, and prediction fields. Among a number of neural networks, backpropagation neural network (BPNN has become the most famous one due to its remarkable function approximation ability. However, a standard BPNN frequently employs a large number of sum and sigmoid calculations, which may result in low efficiency in dealing with large volume of data. Therefore to parallelize BPNN using distributed computing technologies is an effective way to improve the algorithm performance in terms of efficiency. However, traditional parallelization may lead to accuracy loss. Although several complements have been done, it is still difficult to find out a compromise between efficiency and precision. This paper presents a parallelized BPNN based on MapReduce computing model which supplies advanced features including fault tolerance, data replication, and load balancing. And also to improve the algorithm performance in terms of precision, this paper creates a cascading model based classification approach, which helps to refine the classification results. The experimental results indicate that the presented parallelized BPNN is able to offer high efficiency whilst maintaining excellent precision in enabling large-scale machine learning.

  19. Parallel tempering simulation of the three-dimensional Edwards-Anderson model with compact asynchronous multispin coding on GPU

    Science.gov (United States)

    Fang, Ye; Feng, Sheng; Tam, Ka-Ming; Yun, Zhifeng; Moreno, Juana; Ramanujam, J.; Jarrell, Mark

    2014-10-01

    Monte Carlo simulations of the Ising model play an important role in the field of computational statistical physics, and they have revealed many properties of the model over the past few decades. However, the effect of frustration due to random disorder, in particular the possible spin glass phase, remains a crucial but poorly understood problem. One of the obstacles in the Monte Carlo simulation of random frustrated systems is their long relaxation time making an efficient parallel implementation on state-of-the-art computation platforms highly desirable. The Graphics Processing Unit (GPU) is such a platform that provides an opportunity to significantly enhance the computational performance and thus gain new insight into this problem. In this paper, we present optimization and tuning approaches for the CUDA implementation of the spin glass simulation on GPUs. We discuss the integration of various design alternatives, such as GPU kernel construction with minimal communication, memory tiling, and look-up tables. We present a binary data format, Compact Asynchronous Multispin Coding (CAMSC), which provides an additional 28.4% speedup compared with the traditionally used Asynchronous Multispin Coding (AMSC). Our overall design sustains a performance of 33.5 ps per spin flip attempt for simulating the three-dimensional Edwards-Anderson model with parallel tempering, which significantly improves the performance over existing GPU implementations.

  20. An ANN-Based Synthesis Model for Parallel Coupled Microstrip Lines with Floating Ground-Plane Conductor and Its Applications

    Directory of Open Access Journals (Sweden)

    Yuan Cao

    2016-01-01

    Full Text Available To directly obtain physical dimensions of parallel coupled microstrip lines with a floating ground-plane conductor (PCMLFGPC, an accurate synthesis model based on an artificial neural network (ANN is proposed. The synthesis model is validated by using the conformal mapping technique (CMT analysis contours. Using the synthesis model and the CMT analysis, the PCMLFGPC having equal even- and odd-mode phase velocities can be obtained by adjusting the width of the floating ground-plane conductor. Applying the method, a 7 dB coupler with the measured isolation better than 27 dB across a wide bandwidth (more than 120%, a 90° Schiffman phase shifter with phase deviation ±2.5° and return loss more than 17.5 dB covering 63.4% bandwidth, and a bandpass filter with completely eliminated second-order spurious band are implemented. The performances of the current designs are superior to those of the previous components configured with the PCMLFGPC.

  1. A Solution-Phase Parallel Synthesis of 5-Substituted 3,6-Dihydro-7H-1,2,3-triazolo[4,5-d]pyrimidin-7-ones

    Institute of Scientific and Technical Information of China (English)

    Sun Shaofa; Chen Li; Yang Xuhong

    2011-01-01

    5-Substituted 7H-1,2,3-triazolo[4,5-d]pyrimidin-7-ones (4) were rapidly prepared by a solution-phase parallel synthetic method, which includes aza-Wittig reaction of iminophosphorane (1) with phenyl isocynate to give car-bodiimide (2) and subsequent reaction of 2 with various amine and alcohols in the presence of catalytic amount of sodium alkoxide in a parallel fashion.

  2. Defmod - Parallel multiphysics finite element code for modeling crustal deformation during the earthquake/rifting cycle

    CERN Document Server

    Ali, S Tabrez

    2014-01-01

    In this article, we present Defmod, a fully unstructured, two or three dimensional, parallel finite element code for modeling crustal deformation over time scales ranging from milliseconds to thousands of years. Defmod can simulate deformation due to all major processes that make up the earthquake/rifting cycle, in non-homogeneous media. Specifically, it can be used to model deformation due to dynamic and quasistatic processes such as co-seismic slip or dike intrusion(s), poroelastic rebound due to fluid flow and post-seismic or post-rifting viscoelastic relaxation. It can also be used to model deformation due to processes such as post-glacial rebound, hydrological (un)loading, injection and/or withdrawal of compressible or incompressible fluids from subsurface reservoirs etc. Defmod is written in Fortran 95 and uses PETSc's parallel sparse data structures and implicit solvers. Problems can be solved using (stabilized) linear triangular, quadrilateral, tetrahedral or hexahedral elements on shared or distribut...

  3. Dynamic Modelling and Trajectory Tracking of Parallel Manipulator with Flexible Link

    Directory of Open Access Journals (Sweden)

    Chen Zhengsheng

    2013-09-01

    Full Text Available This paper mainly focuses on dynamic modelling and real‐time control for a parallel manipulator with flexible link. The Lagrange principle and assumed modes method (AMM substructure technique is presented to formulate the dynamic modelling of a two‐degrees‐of‐freedom (DOF parallel manipulator with flexible links. Then, the singular perturbation technique (SPT is used to decompose the nonlinear dynamic system into slow time‐scale and fast time‐scale subsystems. Furthermore, the SPT is employed to transform the differential algebraic equations (DAEs for kinematic constraints into explicit ordinary differential equations (ODEs, which makes real‐time control possible. In addition, a novel composite control scheme is presented; the computed torque control is applied for a slow subsystem and the H technique for the fast subsystem, taking account of the model uncertainty and outside disturbance. The simulation results show the composite control can effectively achieve fast and accurate tracking control.

  4. Algorithm comparison and benchmarking using a parallel spectra transform shallow water model

    Energy Technology Data Exchange (ETDEWEB)

    Worley, P.H. [Oak Ridge National Lab., TN (United States); Foster, I.T.; Toonen, B. [Argonne National Lab., IL (United States)

    1995-04-01

    In recent years, a number of computer vendors have produced supercomputers based on a massively parallel processing (MPP) architecture. These computers have been shown to be competitive in performance with conventional vector supercomputers for some applications. As spectral weather and climate models are heavy users of vector supercomputers, it is interesting to determine how these models perform on MPPS, and which MPPs are best suited to the execution of spectral models. The benchmarking of MPPs is complicated by the fact that different algorithms may be more efficient on different architectures. Hence, a comprehensive benchmarking effort must answer two related questions: which algorithm is most efficient on each computer and how do the most efficient algorithms compare on different computers. In general, these are difficult questions to answer because of the high cost associated with implementing and evaluating a range of different parallel algorithms on each MPP platform.

  5. Simulation of levulinic acid adsorption in packed beds using parallel pore/surface diffusion model

    Energy Technology Data Exchange (ETDEWEB)

    Zeng, L.; Mao, J. [Zhejiang Provincial Key Laboratory for Chemical and Biological Processing Technology of Farm Products, Zhejiang University of Science and Technology, Hangzhou (China); Ren, Q. [National Laboratory of Secondary Resources Chemical Engineering, Zhejiang University, Hangzhou (China); Liu, B.

    2010-07-15

    The adsorption of levulinic acid in fixed beds of basic polymeric adsorbents at 22 C was studied under various operating conditions. A general rate model which considers pore diffusion and parallel pore/surface diffusion was solved numerically by orthogonal collocation on finite elements to describe the experimental breakthrough data. The adsorption isotherms, and the pore and surface diffusion coefficients were determined independently in batch adsorption studies. The external film resistance and the axial dispersion coefficient were estimated by the Wilson-Geankoplis equation and the Chung-Wen equation, respectively. Simulation elucidated that the model which considers parallel diffusion successfully describes the breakthrough behavior and gave a much better prediction than the model which considers pore diffusion. The results obtained in this work are applicable to design and optimizes the separation process. (Abstract Copyright [2010], Wiley Periodicals, Inc.)

  6. Stellar Structure Modeling using a Parallel Genetic Algorithm for Objective Global Optimization

    CERN Document Server

    Metcalfe, T S

    2002-01-01

    Genetic algorithms are a class of heuristic search techniques that apply basic evolutionary operators in a computational setting. We have designed a fully parallel and distributed hardware/software implementation of the generalized optimization subroutine PIKAIA, which utilizes a genetic algorithm to provide an objective determination of the globally optimal parameters for a given model against an observational data set. We have used this modeling tool in the context of white dwarf asteroseismology, i.e., the art and science of extracting physical and structural information about these stars from observations of their oscillation frequencies. The efficient, parallel exploration of parameter-space made possible by genetic-algorithm-based numerical optimization led us to a number of interesting physical results: (1) resolution of a hitherto puzzling discrepancy between stellar evolution models and prior asteroseismic inferences of the surface helium layer mass for a DBV white dwarf; (2) precise determination of...

  7. A Parallel Interval Computation Model for Global Optimization with Automatic Load Balancing

    Institute of Scientific and Technical Information of China (English)

    Yong Wu; Arun Kumar

    2012-01-01

    In this paper,we propose a decentralized parallel computation model for global optimization using interval analysis.The model is adaptive to any number of processors and the workload is automatically and evenly distributed among all processors by alternative message passing.The problems received by each processor are processed based on their local dominance properties,which avoids unnecessary interval evaluations.Further,the problem is treated as a whole at the beginning of computation so that no initial decomposition scheme is required.Numerical experiments indicate that the model works well and is stable with different number of parallel processors,distributes the load evenly among the processors,and provides an impressive speedup,especially when the problem is time-consuming to solve.

  8. Dynamic modelling of a 3-CPU parallel robot via screw theory

    Directory of Open Access Journals (Sweden)

    L. Carbonari

    2013-04-01

    Full Text Available The article describes the dynamic modelling of I.Ca.Ro., a novel Cartesian parallel robot recently designed and prototyped by the robotics research group of the Polytechnic University of Marche. By means of screw theory and virtual work principle, a computationally efficient model has been built, with the final aim of realising advanced model based controllers. Then a dynamic analysis has been performed in order to point out possible model simplifications that could lead to a more efficient run time implementation.

  9. Modeling and Control of the Redundant Parallel Adjustment Mechanism on a Deployable Antenna Panel.

    Science.gov (United States)

    Tian, Lili; Bao, Hong; Wang, Meng; Duan, Xuechao

    2016-10-01

    With the aim of developing multiple input and multiple output (MIMO) coupling systems with a redundant parallel adjustment mechanism on the deployable antenna panel, a structural control integrated design methodology is proposed in this paper. Firstly, the modal information from the finite element model of the structure of the antenna panel is extracted, and then the mathematical model is established with the Hamilton principle; Secondly, the discrete Linear Quadratic Regulator (LQR) controller is added to the model in order to control the actuators and adjust the shape of the panel. Finally, the engineering practicality of the modeling and control method based on finite element analysis simulation is verified.

  10. Modeling and Control of the Redundant Parallel Adjustment Mechanism on a Deployable Antenna Panel

    Directory of Open Access Journals (Sweden)

    Lili Tian

    2016-10-01

    Full Text Available With the aim of developing multiple input and multiple output (MIMO coupling systems with a redundant parallel adjustment mechanism on the deployable antenna panel, a structural control integrated design methodology is proposed in this paper. Firstly, the modal information from the finite element model of the structure of the antenna panel is extracted, and then the mathematical model is established with the Hamilton principle; Secondly, the discrete Linear Quadratic Regulator (LQR controller is added to the model in order to control the actuators and adjust the shape of the panel. Finally, the engineering practicality of the modeling and control method based on finite element analysis simulation is verified.

  11. Extending a serial 3D two-phase CFD code to parallel execution over MPI by using the PETSc library for domain decomposition

    CERN Document Server

    Ervik, Åsmund; Müller, Bernhard

    2014-01-01

    To leverage the last two decades' transition in High-Performance Computing (HPC) towards clusters of compute nodes bound together with fast interconnects, a modern scalable CFD code must be able to efficiently distribute work amongst several nodes using the Message Passing Interface (MPI). MPI can enable very large simulations running on very large clusters, but it is necessary that the bulk of the CFD code be written with MPI in mind, an obstacle to parallelizing an existing serial code. In this work we present the results of extending an existing two-phase 3D Navier-Stokes solver, which was completely serial, to a parallel execution model using MPI. The 3D Navier-Stokes equations for two immiscible incompressible fluids are solved by the continuum surface force method, while the location of the interface is determined by the level-set method. We employ the Portable Extensible Toolkit for Scientific Computing (PETSc) for domain decomposition (DD) in a framework where only a fraction of the code needs to be a...

  12. Dorsal column steerability with dual parallel leads using dedicated power sources: a computational model.

    Science.gov (United States)

    Lee, Dongchul; Gillespie, Ewan; Bradley, Kerry

    2011-02-10

    In spinal cord stimulation (SCS), concordance of stimulation-induced paresthesia over painful body regions is a necessary condition for therapeutic efficacy. Since patient pain patterns can be unique, a common stimulation configuration is the placement of two leads in parallel in the dorsal epidural space. This construct provides flexibility in steering stimulation current mediolaterally over the dorsal column to achieve better pain-paresthesia overlap. Using a mathematical model with an accurate fiber diameter distribution, we studied the ability of dual parallel leads to steer stimulation between adjacent contacts on dual parallel leads using (1) a single source system, and (2) a multi-source system, with a dedicated current source for each contact. The volume conductor model of a low-thoracic spinal cord with epidurally-positioned dual parallel (2 mm separation) percutaneous leads was first created, and the electric field was calculated using ANSYS, a finite element modeling tool. The activating function for 10 um fibers was computed as the second difference of the extracellular potential along the nodes of Ranvier on the nerve fibers in the dorsal column. The volume of activation (VOA) and the central point of the VOA were computed using a predetermined threshold of the activating function. The model compared the field steering results with single source versus dedicated power source systems on dual 8-contact stimulation leads. The model predicted that the multi-source system can target more central points of stimulation on the dorsal column than a single source system (100 vs. 3) and the mean steering step for mediolateral steering is 0.02 mm for multi-source systems vs 1 mm for single source systems, a 50-fold improvement. The ability to center stimulation regions in the dorsal column with high resolution may allow for better optimization of paresthesia-pain overlap in patients.

  13. Parallel Computation of Air Pollution Using a Second-Order Closure Model

    Science.gov (United States)

    Pai, Prasad Prabhakar

    1991-02-01

    Rational analysis, prediction and policy making of air pollution problems depend on our understanding of the individual processes that govern the atmospheric system. In the past, computational constraints have prohibited the incorporation of detailed physics of many individual processes in air pollution models. This has resulted in poor model performance for realistic situations. Recent advances in computing capabilities make it possible to develop air pollution models which capture the essential physics of the individual processes. The present study uses a three -dimensional second-order closure diffusion model to simulate dispersion from ground level and elevated point sources in convective (daytime) boundary layers. The model uses mean and turbulence variables simulated with a one-dimensional second-order closure fluid dynamic model. The calculated mean profiles of wind and temperature are found to be in good agreement with the observed Day 33 Wangara data, whereas the calculated vertical profiles of turbulence variables agree well with those estimated from other numerical models and laboratory experiments. The three-dimensional second -order closure diffusion model can capture the plume behavior in daytime atmospheric boundary layer remarkably well in comparison with laboratory data. We also compare the second -order closure diffusion model with the commonly used K -diffusion model for the same meteorological conditions. In order to reduce the computational requirements for second -order closure models, we propose a parallel algorithm of a time-splitting finite element method for the numerical solution of the governing equations. The parallel time -splitting finite element method substantially reduces the model wallclock or turnaround time by exploiting the vector and parallel capabilities of modern supercomputers. The plethora of supercomputers in the market today made it important for us to study the key issue of algorithm "portability". In view of this, we

  14. Phase separation in a binary mixture confined between symmetric parallel plates: Capillary condensation transition near the bulk critical point

    Science.gov (United States)

    Yabunaka, Shunsuke; Okamoto, Ryuichi; Onuki, Akira

    2013-03-01

    We investigate phase separation of near-critical binary mixtures between parallel symmetric walls in the strong adsorption regime. We take into account the renormalization effect due to the critical fluctuations using the recent local functional theory [Okamoto and Onuki, J. Chem. Phys.0021-960610.1063/1.3693331 136, 114704 (2012)]. In statics, a van der Waals loop is obtained in the relation between the average order parameter in the film and the chemical potential when the temperature T is lower than the film critical temperature Tcca (in the case of an upper critical solution temperature). In dynamics, we lower T below the capillary condensation line from above Tcca. We calculate the subsequent time development assuming no mass exchange between the film and the reservoir. In the early stage, the order parameter ψ changes only in the direction perpendicular to the walls. For sufficiently deep quenching, such one-dimensional profiles become unstable with respect to the fluctuations varying in the lateral directions. The late-stage coarsening is then accelerated by the hydrodynamic interaction. A pancake domain of the phase disfavored by the walls finally appears in the middle of the film.

  15. Polarimetry of transiting planets: Differences between plane-parallel and spherical host star atmosphere models

    Science.gov (United States)

    Kostogryz, N. M.; Yakobchuk, T. M.; Berdyugina, S. V.; Milic, I.

    2017-05-01

    Context. To properly interpret photometric and polarimetric observations of exoplanetary transits, accurate calculations of center-to-limb variations of intensity and linear polarization of the host star are needed. These variations, in turn, depend on the choice of geometry of stellar atmosphere. Aims: We want to understand the dependence of the flux and the polarization curves during a transit on the choice of the applied approximation for the stellar atmosphere: spherical and plane-parallel. We examine whether simpler plane-parallel models of stellar atmospheres are good enough to interpret the flux and the polarization light curves during planetary transits, or whether more complicated spherical models should be used. Methods: Linear polarization during a transit appears because a planet eclipses a stellar disk and thus breaks left-right symmetry. We calculate the flux and the polarization variations during a transit with given center-to-limb variations of intensity and polarization. Results: We calculate the flux and the polarization variations during transit for a sample of 405 extrasolar systems. Most of them show higher transit polarization for the spherical stellar atmosphere. Our calculations reveal a group of exoplanetary systems that demonstrates lower maximum polarization during the transits with spherical model atmospheres of host stars with effective temperatures of Teff = 4400-5400 K and surface gravity of log g = 4.45-4.65 than that obtained with plane-parallel atmospheres. Moreover, we have found two trends of the transit polarization. The first trend is a decrease in the polarization calculated with spherical model atmosphere of host stars with effective temperatures Teff = 3500-5100 K, and the second shows an increase in the polarization for host stars with Teff = 5100-7000 K. These trends can be explained by the relative variation of temperature and pressure dependences in the plane-parallel and spherical model atmospheres. Conclusions: For

  16. Simulating Capacitances to Silicon Quantum Dots: Breakdown of the Parallel Plate Capacitor Model

    Science.gov (United States)

    Thorbeck, Ted; Fujiwara, Akira; Zimmerman, Neil M.

    2012-09-01

    Many electrical applications of quantum dots rely on capacitively coupled gates; therefore, to make reliable devices we need those gate capacitances to be predictable and reproducible. We demonstrate in silicon nanowire quantum dots that gate capacitances are reproducible to within 10% for nominally identical devices. We demonstrate the experimentally that gate capacitances scale with device dimensions. We also demonstrate that a capacitance simulator can be used to predict measured gate capacitances to within 20%. A simple parallel plate capacitor model can be used to predict how the capacitances change with device dimensions; however, the parallel plate capacitor model fails for the smallest devices because the capacitances are dominated by fringing fields. We show how the capacitances due to fringing fields can be quickly estimated.

  17. SBML-PET-MPI: a parallel parameter estimation tool for Systems Biology Markup Language based models.

    Science.gov (United States)

    Zi, Zhike

    2011-04-01

    Parameter estimation is crucial for the modeling and dynamic analysis of biological systems. However, implementing parameter estimation is time consuming and computationally demanding. Here, we introduced a parallel parameter estimation tool for Systems Biology Markup Language (SBML)-based models (SBML-PET-MPI). SBML-PET-MPI allows the user to perform parameter estimation and parameter uncertainty analysis by collectively fitting multiple experimental datasets. The tool is developed and parallelized using the message passing interface (MPI) protocol, which provides good scalability with the number of processors. SBML-PET-MPI is freely available for non-commercial use at http://www.bioss.uni-freiburg.de/cms/sbml-pet-mpi.html or http://sites.google.com/site/sbmlpetmpi/.

  18. Highly accelerated cardiac cine parallel MRI using low-rank matrix completion and partial separability model

    Science.gov (United States)

    Lyu, Jingyuan; Nakarmi, Ukash; Zhang, Chaoyi; Ying, Leslie

    2016-05-01

    This paper presents a new approach to highly accelerated dynamic parallel MRI using low rank matrix completion, partial separability (PS) model. In data acquisition, k-space data is moderately randomly undersampled at the center kspace navigator locations, but highly undersampled at the outer k-space for each temporal frame. In reconstruction, the navigator data is reconstructed from undersampled data using structured low-rank matrix completion. After all the unacquired navigator data is estimated, the partial separable model is used to obtain partial k-t data. Then the parallel imaging method is used to acquire the entire dynamic image series from highly undersampled data. The proposed method has shown to achieve high quality reconstructions with reduction factors up to 31, and temporal resolution of 29ms, when the conventional PS method fails.

  19. Web System Dedicated to Parallel Computation for Modeling of Mushy Steel Deformation

    Directory of Open Access Journals (Sweden)

    Dębiński T.

    2014-10-01

    Full Text Available The paper presents web base system for an application of parallel object-oriented programming technique in modelling of rolling process of steel plates with semi-solid zone. It also throws light on the problem of semi-solid steels yield stress relationship, one of the main input data of the simulation, and on application of inverse solution, the only possible method of development of the stress-strain curves at extremely high temperatures. Due to limitations of available computer resources a very accurate computation can sometimes be impossible or the time performance can be a barrier for practical application of complex sequential models. Taking advantage of parallel computing the authors have developed an algorithm allowing for fast computation using multiple processors, which is the main subject of the presented paper.

  20. Fault location of two-parallel transmission line for double phase-to-earth fault using one-terminal data

    Institute of Scientific and Technical Information of China (English)

    张庆超; 段晖; 耿超; 宋文南

    2003-01-01

    An accurate algorithm for fault location of double phase-to-earth fault on transmission line of direct ground neutral system is presented. The algorithm, which employs the faulted phase network and zero-sequence network as fault-location model in which the source impedance at the remote end is not involved, ef-fectively eliminates the effect of load flow and fault resistance on the accuracy of fault location. The algorithm achieves accurate location by measuring only one local end data and is used in a procedure that provides automatic determination of faulted types and phases, and does not require the engineer to specify them. Simulation results showed the effectiveness of the algorithm under the condition of double phase-to-earth fault.

  1. Fault location of two-parallel transmission line for double phase-to-earth fault using one-terminal data

    Institute of Scientific and Technical Information of China (English)

    张庆超; 段晖; 耿超; 宋文南

    2003-01-01

    An accurate algorithm for fault location of double phase-to-earth fault on transmission line of direct ground neutral system is presented. The algorithm, which employs the faulted phase network and zero-sequence network as fault-location model in which the source impedance at the remote end is not involved, effectively eliminates the effect of load flow and fault resistance on the accuracy of fault location. The algorithm achieves accurate location by measuring only one local end data and is used in a procedure that provides automatic determination of faulted types and phases, and does not require the engineer to specify them. Simulation results showed the effectiveness of the algorithm under the condition of double phase-to-earth fault.

  2. A parallel high-order accurate finite element nonlinear Stokes ice sheet model and benchmark experiments

    Energy Technology Data Exchange (ETDEWEB)

    Leng, Wei [Chinese Academy of Sciences; Ju, Lili [University of South Carolina; Gunzburger, Max [Florida State University; Price, Stephen [Los Alamos National Laboratory; Ringler, Todd [Los Alamos National Laboratory,

    2012-01-01

    The numerical modeling of glacier and ice sheet evolution is a subject of growing interest, in part because of the potential for models to inform estimates of global sea level change. This paper focuses on the development of a numerical model that determines the velocity and pressure fields within an ice sheet. Our numerical model features a high-fidelity mathematical model involving the nonlinear Stokes system and combinations of no-sliding and sliding basal boundary conditions, high-order accurate finite element discretizations based on variable resolution grids, and highly scalable parallel solution strategies, all of which contribute to a numerical model that can achieve accurate velocity and pressure approximations in a highly efficient manner. We demonstrate the accuracy and efficiency of our model by analytical solution tests, established ice sheet benchmark experiments, and comparisons with other well-established ice sheet models.

  3. Compliance modeling and analysis of a 3-RPS parallel kinematic machine module

    Science.gov (United States)

    Zhang, Jun; Zhao, Yanqin; Dai, Jiansheng

    2014-07-01

    The compliance modeling and rigidity performance evaluation for the lower mobility parallel manipulators are still to be remained as two overwhelming challenges in the stage of conceptual design due to their geometric complexities. By using the screw theory, this paper explores the compliance modeling and eigencompliance evaluation of a newly patented 1T2R spindle head whose topological architecture is a 3-RPS parallel mechanism. The kinematic definitions and inverse position analysis are briefly addressed in the first place to provide necessary information for compliance modeling. By considering the 3-RPS parallel kinematic machine(PKM) as a typical compliant parallel device, whose three limb assemblages have bending, extending and torsional deflections, an analytical compliance model for the spindle head is established with screw theory and the analytical stiffness matrix of the platform is formulated. Based on the eigenscrew decomposition, the eigencompliance and corresponding eigenscrews are analyzed and the platform's compliance properties are physically interpreted as the suspension of six screw springs. The distributions of stiffness constants of the six screw springs throughout the workspace are predicted in a quick manner with a piece-by-piece calculation algorithm. The numerical simulation reveals a strong dependency of platform's compliance on its configuration in that they are axially symmetric due to structural features. At the last stage, the effects of some design variables such as structural, configurational and dimensional parameters on system rigidity characteristics are investigated with the purpose of providing useful information for the structural design and performance improvement of the PKM. Compared with previous efforts in compliance analysis of PKMs, the present methodology is more intuitive and universal thus can be easily applied to evaluate the overall rigidity performance of other PKMs with high efficiency.

  4. Phase Transition in the Simplest Plasma Model

    CERN Document Server

    Iosilevskiy, Igor

    2009-01-01

    We have investigated the phase transition of the gas-liquid type, with an upper critical point, in a variant of the One Component Plasma model (OCP) that has a uniform but compressible compensating background. We have calculated the parameters of the critical and triple points, spinodals, and two-phase coexistence curves (binodals). We have analyzed the connection of this simplest plasma phase transition with anomalies in the spatial charge profiles of equilibrium non-uniform plasma in the local-density approximations of Thomas-Fermi or Poisson-Boltzmann-type.

  5. A flowstream based analytical model for design of parallel plate heatsinks

    Energy Technology Data Exchange (ETDEWEB)

    Holahan, M.F.; Kang, S.S. [IBM Corp., Rochester, MN (United States); Bar-Cohen, A. [Univ. of Minnesota, Minneapolis, MN (United States). Dept. of Mechanical Engineering

    1996-12-31

    An analytical model for calculating thermal and pressure drop performance in compact, laminar flow parallel plate heatsink fins is developed. The flow field in the channel between the fins is modeled as a Hele-Shaw flow. Conduction within the fin is modeled by superposition of a kernel function derived from the method of images. Convective heat transfer coefficients are adapted from existing parallel plate correlations. A pressure drop model function is developed. Using examples of a simple side-inlet-side-outlet (SISE) flow pattern and a complex top-inlet-side-outlet (TISE) flow pattern, the model is shown to handle arbitrary flow stream patterns. TISE model results are in good agreement with experiment and CFD results. Optimization of flow pattern in a TISE heatsink at constant pumping power resulted in a 5% reduction in thermal resistance. The model can solve for anew fin geometry or flow rate in just 5 seconds on a PC platform, making it suitable for parametric design studies.

  6. 3-D Parallel Simulation Model of Continuous Beam-Electron Cloud Interactions

    CERN Document Server

    Ghalam, Ali F; Decyk, Viktor K; Huang Cheng Kun; Katsouleas, Thomas C; Mori, Warren; Rumolo, Giovanni; Zimmermann, Frank

    2005-01-01

    A 3D Particle-In-Cell model for continuous modeling of beam and electron cloud interaction in a circular accelerator is presented. A simple model for lattice structure, mainly the Quadruple and dipole magnets and chromaticity have been added to a plasma PIC code, QuickPIC, used extensively to model plasma wakefield acceleration concept. The code utilizes parallel processing techniques with domain decomposition in both longitudinal and transverse domains to overcome the massive computational costs of continuously modeling the beam-cloud interaction. Through parallel modeling, we have been able to simulate long-term beam propagation in the presence of electron cloud in many existing and future circular machines around the world. The exact dipole lattice structure has been added to the code and the simulation results for CERN-SPS and LHC with the new lattice structure have been studied. Also the simulation results are compared to the results from the two macro-particle modeling for strong head-tail instability. ...

  7. Preliminary Phase Field Computational Model Development

    Energy Technology Data Exchange (ETDEWEB)

    Li, Yulan [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Hu, Shenyang Y. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Xu, Ke [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Suter, Jonathan D. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); McCloy, John S. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Johnson, Bradley R. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Ramuhalli, Pradeep [Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

    2014-12-15

    This interim report presents progress towards the development of meso-scale models of magnetic behavior that incorporate microstructural information. Modeling magnetic signatures in irradiated materials with complex microstructures (such as structural steels) is a significant challenge. The complexity is addressed incrementally, using the monocrystalline Fe (i.e., ferrite) film as model systems to develop and validate initial models, followed by polycrystalline Fe films, and by more complicated and representative alloys. In addition, the modeling incrementally addresses inclusion of other major phases (e.g., martensite, austenite), minor magnetic phases (e.g., carbides, FeCr precipitates), and minor nonmagnetic phases (e.g., Cu precipitates, voids). The focus of the magnetic modeling is on phase-field models. The models are based on the numerical solution to the Landau-Lifshitz-Gilbert equation. From the computational standpoint, phase-field modeling allows the simulation of large enough systems that relevant defect structures and their effects on functional properties like magnetism can be simulated. To date, two phase-field models have been generated in support of this work. First, a bulk iron model with periodic boundary conditions was generated as a proof-of-concept to investigate major loop effects of single versus polycrystalline bulk iron and effects of single non-magnetic defects. More recently, to support the experimental program herein using iron thin films, a new model was generated that uses finite boundary conditions representing surfaces and edges. This model has provided key insights into the domain structures observed in magnetic force microscopy (MFM) measurements. Simulation results for single crystal thin-film iron indicate the feasibility of the model for determining magnetic domain wall thickness and mobility in an externally applied field. Because the phase-field model dimensions are limited relative to the size of most specimens used in

  8. Scaling Properties and Asymptotic Spectra of Finite Models of Phase Transitions as They Approach Macroscopic Limits

    Science.gov (United States)

    Rowe, D. J.; Turner, P. S.; Rosensteel, G.

    2004-11-01

    The asymptotic spectra and scaling properties of a mixed-symmetry Hamiltonian, which exhibits a second-order phase transition in its macroscopic limit, are examined for a system of N interacting bosons. A second interacting boson-model Hamiltonian, which exhibits a first-order phase transition, is also considered. The latter shows many parallel characteristics and some notable differences, leaving it open to question as to the nature of its asymptotic critical-point properties.

  9. Modeling of fatigue crack induced nonlinear ultrasonics using a highly parallelized explicit local interaction simulation approach

    Science.gov (United States)

    Shen, Yanfeng; Cesnik, Carlos E. S.

    2016-04-01

    This paper presents a parallelized modeling technique for the efficient simulation of nonlinear ultrasonics introduced by the wave interaction with fatigue cracks. The elastodynamic wave equations with contact effects are formulated using an explicit Local Interaction Simulation Approach (LISA). The LISA formulation is extended to capture the contact-impact phenomena during the wave damage interaction based on the penalty method. A Coulomb friction model is integrated into the computation procedure to capture the stick-slip contact shear motion. The LISA procedure is coded using the Compute Unified Device Architecture (CUDA), which enables the highly parallelized supercomputing on powerful graphic cards. Both the explicit contact formulation and the parallel feature facilitates LISA's superb computational efficiency over the conventional finite element method (FEM). The theoretical formulations based on the penalty method is introduced and a guideline for the proper choice of the contact stiffness is given. The convergence behavior of the solution under various contact stiffness values is examined. A numerical benchmark problem is used to investigate the new LISA formulation and results are compared with a conventional contact finite element solution. Various nonlinear ultrasonic phenomena are successfully captured using this contact LISA formulation, including the generation of nonlinear higher harmonic responses. Nonlinear mode conversion of guided waves at fatigue cracks is also studied.

  10. Service Virtualization Using a Non-von Neumann Parallel, Distributed, and Scalable Computing Model

    Directory of Open Access Journals (Sweden)

    Rao Mikkilineni

    2012-01-01

    Full Text Available This paper describes a prototype implementing a high degree of transaction resilience in distributed software systems using a non-von Neumann computing model exploiting parallelism in computing nodes. The prototype incorporates fault, configuration, accounting, performance, and security (FCAPS management using a signaling network overlay and allows the dynamic control of a set of distributed computing elements in a network. Each node is a computing entity endowed with self-management and signaling capabilities to collaborate with similar nodes in a network. The separation of parallel computing and management channels allows the end-to-end transaction management of computing tasks (provided by the autonomous distributed computing elements to be implemented as network-level FCAPS management. While the new computing model is operating system agnostic, a Linux, Apache, MySQL, PHP/Perl/Python (LAMP based services architecture is implemented in a prototype to demonstrate end-to-end transaction management with auto-scaling, self-repair, dynamic performance management and distributed transaction security assurance. The implementation is made possible by a non-von Neumann middleware library providing Linux process management through multi-threaded parallel execution of self-management and signaling abstractions. We did not use Hypervisors, Virtual machines, or layers of complex virtualization management systems in implementing this prototype.

  11. Phase Diagram of the Frustrated Hubbard Model

    Science.gov (United States)

    Zitzler, R.; Tong, N.-H.; Pruschke, Th.; Bulla, R.

    2004-07-01

    The Mott-Hubbard metal-insulator transition in the paramagnetic phase of the one-band Hubbard model has long been used to describe similar features in real materials like V2O3. In this Letter we investigate the antiferromagnetic phase of this model with frustration. At T=0 we find a first-order transition from a paramagnetic metal to an antiferromagnetic insulator. We show that even in the presence of strong magnetic frustration, the paramagnetic metal-insulator transition is hidden inside an extended antiferromagnetic region. This raises the question of whether the one-band Hubbard model with frustration is sufficient to describe the phase diagram of V2O3 or similar transition metal oxides even qualitatively.

  12. An Ant Optimization Model for Unrelated Parallel Machine Scheduling with Energy Consumption and Total Tardiness

    Directory of Open Access Journals (Sweden)

    Peng Liang

    2015-01-01

    Full Text Available This research considers an unrelated parallel machine scheduling problem with energy consumption and total tardiness. This problem is compounded by two challenges: differences of unrelated parallel machines energy consumption and interaction between job assignments and machine state operations. To begin with, we establish a mathematical model for this problem. Then an ant optimization algorithm based on ATC heuristic rule (ATC-ACO is presented. Furthermore, optimal parameters of proposed algorithm are defined via Taguchi methods for generating test data. Finally, comparative experiments indicate the proposed ATC-ACO algorithm has better performance on minimizing energy consumption as well as total tardiness and the modified ATC heuristic rule is more effectively on reducing energy consumption.

  13. A parallel finite-element method for three-dimensional controlled-source electromagnetic forward modelling

    Science.gov (United States)

    Puzyrev, Vladimir; Koldan, Jelena; de la Puente, Josep; Houzeaux, Guillaume; Vázquez, Mariano; Cela, José María

    2013-05-01

    We present a nodal finite-element method that can be used to compute in parallel highly accurate solutions for 3-D controlled-source electromagnetic forward-modelling problems in anisotropic media. Secondary coupled-potential formulation of Maxwell's equations allows to avoid the singularities introduced by the sources, while completely unstructured tetrahedral meshes and mesh refinement support an accurate representation of geological and bathymetric complexity and improve the solution accuracy. Different complex iterative solvers and an efficient pre-conditioner based on the sparse approximate inverse are used for solving the resulting large sparse linear system of equations. Results are compared with the ones of other researchers to check the accuracy of the method. We demonstrate the performance of the code in large problems with tens and even hundreds of millions of degrees of freedom. Scalability tests on massively parallel computers show that our code is highly scalable.

  14. Solution and Application about Conversion Tensor of Motion in Dynamic Modeling of 6-HTRT Parallel Robot

    Institute of Scientific and Technical Information of China (English)

    LUO Bing; LU Nian-li; CHE Ren-wei

    2009-01-01

    Equivalent integrated finite element method is a canonical and efficient modeling method in dynamic analysis of complex mechanism. The key of establishing dynamic equations of spatial mechanism by the method is to confirm Jacobian matrix reflecting relations of all joints, nodes, and generalized coordinates, namely, relations of second-order and corresponding third-order conversion tensors. For complex motion relations of components in a parallel robot, it gives second-order and third-order conversion tensors of dynamic equations for the 6-HTRT parallel robot based on equivalent integrated f'mite element method. The method is suitable for the typical robots whose positions of work space and sizes of mechanism are different. The solving course of the method is simple and convenient, so the method lays the foundation of dynamic analysis for robots.

  15. Implementation of Newton-Rapshon iterations for parallel staggered-grid geodynamic models

    Science.gov (United States)

    Popov, A. A.; Kaus, B. J. P.

    2012-04-01

    Staggered-grid finite differences discretization has a good potential for solving highly heterogeneous geodynamic models on parallel computers (e.g. Tackey, 2008; Gerya &Yuen, 2007). They are inherently stable, computationally inexpensive and relatively easy to implement. However, currently used staggered-grid geodynamic codes employ almost exclusively the sub-optimal Picard linearization scheme to deal with nonlinearities. It was shown that Newton-Rapshon linearization can lead to substantial improvements of the solution quality in geodynamic problems, simultaneously with reduction of computer time (e.g. Popov & Sobolev, 2008). This work is aimed at implementation of the Newton-Rapshon linearization in the parallel geodynamic code LaMEM together with staggered-grid discretization and viso-(elasto)-plastic rock rheologies. We present the expressions for the approximate Jacobian matrix, and give detailed comparisons with the currently employed Picard linearization scheme, in terms of solution quality and number of iterations.

  16. The Calculation of Unbalanced Voltage on the tertiary bus of a single phase auto transformer in case of Parallel Operation with Different Manufacturer

    Energy Technology Data Exchange (ETDEWEB)

    Shim, E.B.; Woo, J.W.; Kwak, J.S. [Korea Electric Power Research Institute (Korea); Joe, S.H.; Hur, Y.H. [KEPCO (Korea); Han, S.O. [Chungnam University (Korea)

    2001-07-01

    This paper described the unbalanced voltage on the tertiary bus of a single phase auto transformer in the case of parallel operation with different manufacturer at each phase. The unbalanced capacitances between primary to secondary winding, secondary to tertiary winding and primary to tertiary winding makes unbalanced bus voltage in the tertiary bus side. The unbalanced voltage let the surge arrester to operate in the power frequency range, and it causes the arrester to burn out. The failure of the arrester at one phase makes line to ground fault, which lead to the surge arrester failure of the other two phase on the tertiary bus. (author). 3 refs., 10 figs., 2 tabs.

  17. A web-based, collaborative modeling, simulation, and parallel computing environment for electromechanical systems

    Directory of Open Access Journals (Sweden)

    Xiaoliang Yin

    2015-03-01

    Full Text Available Complex electromechanical system is usually composed of multiple components from different domains, including mechanical, electronic, hydraulic, control, and so on. Modeling and simulation for electromechanical system on a unified platform is one of the research hotspots in system engineering at present. It is also the development trend of the design for complex electromechanical system. The unified modeling techniques and tools based on Modelica language provide a satisfactory solution. To meet with the requirements of collaborative modeling, simulation, and parallel computing for complex electromechanical systems based on Modelica, a general web-based modeling and simulation prototype environment, namely, WebMWorks, is designed and implemented. Based on the rich Internet application technologies, an interactive graphic user interface for modeling and post-processing on web browser was implemented; with the collaborative design module, the environment supports top-down, concurrent modeling and team cooperation; additionally, service-oriented architecture–based architecture was applied to supply compiling and solving services which run on cloud-like servers, so the environment can manage and dispatch large-scale simulation tasks in parallel on multiple computing servers simultaneously. An engineering application about pure electric vehicle is tested on WebMWorks. The results of simulation and parametric experiment demonstrate that the tested web-based environment can effectively shorten the design cycle of the complex electromechanical system.

  18. Precise Modeling Based on Dynamic Phasors for Droop-Controlled Parallel-Connected Inverters

    DEFF Research Database (Denmark)

    Wang, L.; Guo, X.Q.; Gu, H.R.;

    2012-01-01

    This paper deals with the precise modeling of droop controlled parallel inverters. This is very attractive since that is a common structure that can be found in a stand-alone droopcontrolled MicroGrid. The conventional small-signal dynamic is not able to predict instabilities of the system, so th....... In addition, the virtual ω-E frame power control method, which deals with the power coupling caused by the line impedance X/R characteristic, has been chosen as an application example of this modeling technique....

  19. A massively parallel GPU-accelerated model for analysis of fully nonlinear free surface waves

    DEFF Research Database (Denmark)

    Engsig-Karup, Allan Peter; Madsen, Morten G.; Glimberg, Stefan Lemvig

    2011-01-01

    -throughput co-processors to the CPU. We describe and demonstrate how this approach makes it possible to do fast desktop computations for large nonlinear wave problems in numerical wave tanks (NWTs) with close to 50/100 million total grid points in double/ single precision with 4 GB global device memory...... space dimensions and is useful for fast analysis and prediction purposes in coastal and offshore engineering. A dedicated numerical model based on the proposed algorithm is executed in parallel by utilizing affordable modern special purpose graphics processing unit (GPU). The model is based on a low...

  20. ON THE DYNAMIC MODELING AND CONTROL OF 2-DOF PLANAR PARALLEL MECHANISM WITH FLEXIBLE LINKS

    Institute of Scientific and Technical Information of China (English)

    Luo Lei; Wang Shigang; Mo Jinqiu; Cai Jianguo

    2005-01-01

    The object of study is about dynamic modeling and control for a 2 degree-of-freedom (DOF) planar parallel mechanism (PM) with flexible links. The kinematic and dynamic equations are established according to the characteristics of mixed rigid and flexible structure. By using the singular perturbation approach (SPA), the model of the mechanism can be separated into slow and fast subsystems. Based on the feedback linearization theory and input shaping technique, the large scale rigid motion controller and the flexible link vibration controller can be designed separately to achieve fast and accurate positioning of the PM.

  1. Parallel LC circuit model for multi-band absorption and preliminary design of radiative cooling.

    Science.gov (United States)

    Feng, Rui; Qiu, Jun; Liu, Linhua; Ding, Weiqiang; Chen, Lixue

    2014-12-15

    We perform a comprehensive analysis of multi-band absorption by exciting magnetic polaritons in the infrared region. According to the independent properties of the magnetic polaritons, we propose a parallel inductance and capacitance(PLC) circuit model to explain and predict the multi-band resonant absorption peaks, which is fully validated by using the multi-sized structure with identical dielectric spacing layer and the multilayer structure with the same strip width. More importantly, we present the application of the PLC circuit model to preliminarily design a radiative cooling structure realized by merging several close peaks together. This omnidirectional and polarization insensitive structure is a good candidate for radiative cooling application.

  2. Preemptive scheduling of parallel jobs on multiprocessors

    Energy Technology Data Exchange (ETDEWEB)

    Deng, Xiaotie; Gu, Nian; Brecht, T. [York Univ., North York (Canada); KaiCheng Lu [TsingHua Univ., Beijing (China)

    1996-12-31

    We study the problem of processor scheduling for parallel jobs. We prove that, for jobs with a single phase of parallelism, an algorithm can achieve a mean response time within 2 - 2/n+1 times the optimum. This is extended to jobs with multiple phases of parallelism and to interactive jobs (with phases during which the job has no CPU requirements) for a solution within 4 - 4/n+1 times the optimum. Comparing with previous work, our assumption that job execution times are unknown prior to their completion is more realistic, our multi-phased job model is more general, and our approximation ratio (for jobs with a single phase of parallelism) is better and cannot be improved.

  3. A Fault-Tolerant Parallel Structure of Single-Phase Full-Bridge Rectifiers for a Wound-Field Doubly Salient Generator

    DEFF Research Database (Denmark)

    Chen, Zhihui; Chen, Ran; Chen, Zhe

    2013-01-01

    The fault-tolerance design is widely adopted for high-reliability applications. In this paper, a parallel structure of single-phase full-bridge rectifiers (FBRs) (PS-SPFBR) is proposed for a wound-field doubly salient generator. The analysis shows the potential fault-tolerance capability of the P...

  4. Performance Evaluation of Parallel Message Passing and Thread Programming Model on Multicore Architectures

    CERN Document Server

    Hasta, D T

    2010-01-01

    The current trend of multicore architectures on shared memory systems underscores the need of parallelism. While there are some programming model to express parallelism, thread programming model has become a standard to support these system such as OpenMP, and POSIX threads. MPI (Message Passing Interface) which remains the dominant model used in high-performance computing today faces this challenge. Previous version of MPI which is MPI-1 has no shared memory concept, and Current MPI version 2 which is MPI-2 has a limited support for shared memory systems. In this research, MPI-2 version of MPI will be compared with OpenMP to see how well does MPI perform on multicore / SMP (Symmetric Multiprocessor) machines. Comparison between OpenMP for thread programming model and MPI for message passing programming model will be conducted on multicore shared memory machine architectures to see who has a better performance in terms of speed and throughput. Application used to assess the scalability of the evaluated parall...

  5. New 2D diffraction model and its applications to terahertz parallel-plate waveguide power splitters

    Science.gov (United States)

    Zhang, Fan; Song, Kaijun; Fan, Yong

    2017-02-01

    A two-dimensional (2D) diffraction model for the calculation of the diffraction field in 2D space and its applications to terahertz parallel-plate waveguide power splitters are proposed in this paper. Compared with the Huygens-Fresnel principle in three-dimensional (3D) space, the proposed model provides an approximate analytical expression to calculate the diffraction field in 2D space. The diffraction filed is regarded as the superposition integral in 2D space. The calculated results obtained from the proposed diffraction model agree well with the ones by software HFSS based on the element method (FEM). Based on the proposed 2D diffraction model, two parallel-plate waveguide power splitters are presented. The splitters consist of a transmitting horn antenna, reflectors, and a receiving antenna array. The reflector is cylindrical parabolic with superimposed surface relief to efficiently couple the transmitted wave into the receiving antenna array. The reflector is applied as computer-generated holograms to match the transformed field to the receiving antenna aperture field. The power splitters were optimized by a modified real-coded genetic algorithm. The computed results of the splitters agreed well with the ones obtained by software HFSS verify the novel design method for power splitter, which shows good applied prospects of the proposed 2D diffraction model.

  6. Practical enhancement factor model based on GM for multiple parallel reactions: Piperazine (PZ) CO2 capture

    DEFF Research Database (Denmark)

    Gaspar, Jozsef; Fosbøl, Philip Loldrup

    2017-01-01

    Reactive absorption is a key process for gas separation and purification and it is the main technology for CO2 capture. Thus, reliable and simple mathematical models for mass transfer rate calculation are essential. Models which apply to parallel interacting and non-interacting reactions, for all......, desorption and pinch conditions.In this work, we apply the GM model to multiple parallel reactions. We deduce the model for piperazine (PZ) CO2 capture and we validate it against wetted-wall column measurements using 2, 5 and 8 molal PZ for temperatures between 40 °C and 100 °C and CO2 loadings between 0.......23 and 0.41 mol CO2/2 mol PZ. We show that overall second order kinetics describes well the reaction between CO2 and PZ accounting for the carbamate and bicarbamate reactions. Here we prove the GM model for piperazine and MEA but we expect that this practical approach is applicable for various amines...

  7. Pasta phases within the QMC model

    CERN Document Server

    Grams, Guilherme; Panda, Prafulla K; Providência, Constança; Menezes, Débora P

    2016-01-01

    In this work the low density regions of nuclear and neutron star matter are studied. The search for the existence of pasta phases in this region is performed within the context of the quark-meson coupling (QMC) model, which incorporates quark degrees of freedom. Fixed proton fractions are considered, as well as nuclear matter in beta equilibrium at zero temperature. We discuss the recent attempts to better understand the surface energy in the coexistence phases regime and we present results that show the existence of the pasta phases subject to some choices of the surface energy coefficient. We also analyze the influence of the nuclear pasta on some neutron star properties. The equation of state containing the pasta phase will be part of a complete grid for future use in supernova simulations.

  8. A Parallelized Pumpless Artificial Placenta System Significantly Prolonged Survival Time in a Preterm Lamb Model.

    Science.gov (United States)

    Miura, Yuichiro; Matsuda, Tadashi; Usuda, Haruo; Watanabe, Shimpei; Kitanishi, Ryuta; Saito, Masatoshi; Hanita, Takushi; Kobayashi, Yoshiyasu

    2016-05-01

    An artificial placenta (AP) is an arterio-venous extracorporeal life support system that is connected to the fetal circulation via the umbilical vasculature. Previously, we published an article describing a pumpless AP system with a small priming volume. We subsequently developed a parallelized system, hypothesizing that the reduced circuit resistance conveyed by this modification would enable healthy fetal survival time to be prolonged. We conducted experiments using a premature lamb model to test this hypothesis. As a result, the fetal survival period was significantly prolonged (60.4 ± 3.8 vs. 18.2 ± 3.2 h, P < 0.01), and circuit resistance and minimal blood lactate levels were significantly lower in the parallel circuit group, compared with our previous single circuit group. Fetal physiological parameters remained stable until the conclusion of the experiments. In summary, parallelization of the AP system was associated with reduced circuit resistance and lactate levels and allowed preterm lamb fetuses to survive for a significantly longer period when compared with previous studies.

  9. Modeling flue pipes: Subsonic flow, lattice Boltzmann, and parallel distributed computers

    Science.gov (United States)

    Skordos, Panayotis A.

    1995-01-01

    The problem of simulating the hydrodynamics and the acoustic waves inside wind musical instruments such as the recorder the organ, and the flute is considered. The problem is attacked by developing suitable local-interaction algorithms and a parallel simulation system on a cluster of non-dedicated workstations. Physical measurements of the acoustic signal of various flue pipes show good agreement with the simulations. Previous attempts at this problem have been frustrated because the modeling of acoustic waves requires small integration time steps which make the simulation very compute-intensive. In addition, the simulation of subsonic viscous compressible flow at high Reynolds numbers is susceptible to slow-growing numerical instabilities which are triggered by high-frequency acoustic modes. The numerical instabilities are mitigated by employing suitable explicit algorithms: lattice Boltzmann method, compressible finite differences, and fourth-order artificial-viscosity filter. Further, a technique for accurate initial and boundary conditions for the lattice Boltzmann method is developed, and the second-order accuracy of the lattice Boltzmann method is demonstrated. The compute-intensive requirements are handled by developing a parallel simulation system on a cluster of non-dedicated workstations. The system achieves 80 percent parallel efficiency (speedup/processors) using 20 HP-Apollo workstations. The system is built on UNIX and TCP/IP communication routines, and includes automatic process migration from busy hosts to free hosts.

  10. On Affine Fusion and the Phase Model

    Directory of Open Access Journals (Sweden)

    Mark A. Walton

    2012-11-01

    Full Text Available A brief review is given of the integrable realization of affine fusion discovered recently by Korff and Stroppel. They showed that the affine fusion of the su(n Wess-Zumino-Novikov-Witten (WZNW conformal field theories appears in a simple integrable system known as the phase model. The Yang-Baxter equation leads to the construction of commuting operators as Schur polynomials, with noncommuting hopping operators as arguments. The algebraic Bethe ansatz diagonalizes them, revealing a connection to the modular S matrix and fusion of the su(n WZNW model. The noncommutative Schur polynomials play roles similar to those of the primary field operators in the corresponding WZNW model. In particular, their 3-point functions are the su(n fusion multiplicities. We show here how the new phase model realization of affine fusion makes obvious the existence of threshold levels, and how it accommodates higher-genus fusion.

  11. Parallel labeling experiments validate Clostridium acetobutylicum metabolic network model for (13)C metabolic flux analysis.

    Science.gov (United States)

    Au, Jennifer; Choi, Jungik; Jones, Shawn W; Venkataramanan, Keerthi P; Antoniewicz, Maciek R

    2014-11-01

    In this work, we provide new insights into the metabolism of Clostridium acetobutylicum ATCC 824 obtained using a systematic approach for quantifying fluxes based on parallel labeling experiments and (13)C-metabolic flux analysis ((13)C-MFA). Here, cells were grown in parallel cultures with [1-(13)C]glucose and [U-(13)C]glucose as tracers and (13)C-MFA was used to quantify intracellular metabolic fluxes. Several metabolic network models were compared: an initial model based on current knowledge, and extended network models that included additional reactions that improved the fits of experimental data. While the initial network model did not produce a statistically acceptable fit of (13)C-labeling data, an extended network model with five additional reactions was able to fit all data with 292 redundant measurements. The model was subsequently trimmed to produce a minimal network model of C. acetobutylicum for (13)C-MFA, which could still reproduce all of the experimental data. The flux results provided valuable new insights into the metabolism of C. acetobutylicum. First, we found that TCA cycle was effectively incomplete, as there was no measurable flux between α-ketoglutarate and succinyl-CoA, succinate and fumarate, and malate and oxaloacetate. Second, an active pathway was identified from pyruvate to fumarate via aspartate. Third, we found that isoleucine was produced exclusively through the citramalate synthase pathway in C. acetobutylicum and that CAC3174 was likely responsible for citramalate synthase activity. These model predictions were confirmed in several follow-up tracer experiments. The validated metabolic network model established in this study can be used in future investigations for unbiased (13)C-flux measurements in C. acetobutylicum. Copyright © 2014 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.

  12. Modeling a high output marine steam generator feedwater control system which uses parallel turbine-driven feed pumps

    Institute of Scientific and Technical Information of China (English)

    QIU Zhi-qiang; ZOU Hai; SUN Jian-hua

    2008-01-01

    Parallel turbine-driven feedwater pumps are needed when ships travel at high speed. In order to study marine steam generator feedwater control systems which use parallel turbine-driven feed pumps,a mathematical model of marine steam generator feedwater control system was developed which includes mathematical models of two steam generators and parallel turbine-driven feed pumps as well as mathematical models of feedwater pipes and feed regulating valves. The operating condition points of the parallel turbine-driven feed pumps were calculated by the Chebyshev curve fit method. A water level controller for the steam generator and a rotary speed controller for the turbine-driven feed pumps were also included in the model. The accuracy of the mathematical models and their controllers was verified by comparing their results with those from a simulator.

  13. A generic simulation cell method for developing extensible, efficient and readable parallel computational models

    Science.gov (United States)

    Honkonen, I.

    2015-03-01

    I present a method for developing extensible and modular computational models without sacrificing serial or parallel performance or source code readability. By using a generic simulation cell method I show that it is possible to combine several distinct computational models to run in the same computational grid without requiring modification of existing code. This is an advantage for the development and testing of, e.g., geoscientific software as each submodel can be developed and tested independently and subsequently used without modification in a more complex coupled program. An implementation of the generic simulation cell method presented here, generic simulation cell class (gensimcell), also includes support for parallel programming by allowing model developers to select which simulation variables of, e.g., a domain-decomposed model to transfer between processes via a Message Passing Interface (MPI) library. This allows the communication strategy of a program to be formalized by explicitly stating which variables must be transferred between processes for the correct functionality of each submodel and the entire program. The generic simulation cell class requires a C++ compiler that supports a version of the language standardized in 2011 (C++11). The code is available at https://github.com/nasailja/gensimcell for everyone to use, study, modify and redistribute; those who do are kindly requested to acknowledge and cite this work.

  14. Error modeling and tolerance design of a parallel manipulator with full-circle rotation

    Directory of Open Access Journals (Sweden)

    Yanbing Ni

    2016-05-01

    Full Text Available A method for improving the accuracy of a parallel manipulator with full-circle rotation is systematically investigated in this work via kinematic analysis, error modeling, sensitivity analysis, and tolerance allocation. First, a kinematic analysis of the mechanism is made using the space vector chain method. Using the results as a basis, an error model is formulated considering the main error sources. Position and orientation error-mapping models are established by mathematical transformation of the parallelogram structure characteristics. Second, a sensitivity analysis is performed on the geometric error sources. A global sensitivity evaluation index is proposed to evaluate the contribution of the geometric errors to the accuracy of the end-effector. The analysis results provide a theoretical basis for the allocation of tolerances to the parts of the mechanical design. Finally, based on the results of the sensitivity analysis, the design of the tolerances can be solved as a nonlinearly constrained optimization problem. A genetic algorithm is applied to carry out the allocation of the manufacturing tolerances of the parts. Accordingly, the tolerance ranges for nine kinds of geometrical error sources are obtained. The achievements made in this work can also be applied to other similar parallel mechanisms with full-circle rotation to improve error modeling and design accuracy.

  15. Kinematic Model Building and Servo Parameter Identification of 3-HSS Parallel Mechanism

    Institute of Scientific and Technical Information of China (English)

    YANG Zhi-yong; WU Jiang; HUANG Tian; NI Yan-bing

    2006-01-01

    Aiming at a parallel mechanism with three degrees of freedom,a method for dynamic model building and the parameter identification of its servosystem ispresented.First,the reverse solution models of position,velocity,and acceleration of parallelogram branch structure are deduced.and then.its dynamic model of a rigid body is set up by using the virtual work principle.Based on the above model.a method to identify the servo parameter of the parallel mechanism is put up.In this method.the triangle-shaped input with variable frequency is adopted to offset the disadvantages of pseudorandom number sequence in parameter identification.such as dramatically changing the vibration amplitude of the motor,easily impacting the motor that results in its velocity loop to easily open,and so on.Moreover,the rotary inertia can also be identified bv the additive mass.The abovementioned data will lay a solid foundation for the optimum performance of the system in the whole WOrkspace.

  16. New 3D parallel GILD electromagnetic modeling and nonlinear inversion using global magnetic integral and local differential equation

    Energy Technology Data Exchange (ETDEWEB)

    Xie, G.; Li, J.; Majer, E.; Zuo, D.

    1998-07-01

    This paper describes a new 3D parallel GILD electromagnetic (EM) modeling and nonlinear inversion algorithm. The algorithm consists of: (a) a new magnetic integral equation instead of the electric integral equation to solve the electromagnetic forward modeling and inverse problem; (b) a collocation finite element method for solving the magnetic integral and a Galerkin finite element method for the magnetic differential equations; (c) a nonlinear regularizing optimization method to make the inversion stable and of high resolution; and (d) a new parallel 3D modeling and inversion using a global integral and local differential domain decomposition technique (GILD). The new 3D nonlinear electromagnetic inversion has been tested with synthetic data and field data. The authors obtained very good imaging for the synthetic data and reasonable subsurface EM imaging for the field data. The parallel algorithm has high parallel efficiency over 90% and can be a parallel solver for elliptic, parabolic, and hyperbolic modeling and inversion. The parallel GILD algorithm can be extended to develop a high resolution and large scale seismic and hydrology modeling and inversion in the massively parallel computer.

  17. Algorithms for a parallel implementation of Hidden Markov Models with a small state space

    DEFF Research Database (Denmark)

    Nielsen, Jesper; Sand, Andreas

    2011-01-01

    Two of the most important algorithms for Hidden Markov Models are the forward and the Viterbi algorithms. We show how formulating these using linear algebra naturally lends itself to parallelization. Although the obtained algorithms are slow for Hidden Markov Models with large state spaces......, they require very little communication between processors, and are fast in practice on models with a small state space. We have tested our implementation against two other imple- mentations on artificial data and observe a speed-up of roughly a factor of 5 for the forward algorithm and more than 6...... for the Viterbi algorithm. We also tested our algorithm in the Coalescent Hidden Markov Model framework, where it gave a significant speed-up....

  18. A comparison of distributed memory and virtual shared memory parallel programming models

    Energy Technology Data Exchange (ETDEWEB)

    Keane, J.A. [Univ. of Manchester (United Kingdom). Dept. of Computer Science; Grant, A.J. [Univ. of Manchester (United Kingdom). Computer Graphics Unit; Xu, M.Q. [Argonne National Lab., IL (United States)

    1993-04-01

    The virtues of the different parallel programming models, shared memory and distributed memory, have been much debated. Conventionally the debate could be reduced to programming convenience on the one hand, and high salability factors on the other. More recently the debate has become somewhat blurred with the provision of virtual shared memory models built on machines with physically distributed memory. The intention of such models/machines is to provide scalable shared memory, i.e. to provide both programmer convenience and high salability. In this paper, the different models are considered from experiences gained with a number of system ranging from applications in both commerce and science to languages and operating systems. Case studies are introduced as appropriate.

  19. Investigation of the charging characteristics of micrometer sized droplets based on parallel plate capacitor model.

    Science.gov (United States)

    Zhang, Yanzhen; Liu, Yonghong; Wang, Xiaolong; Shen, Yang; Ji, Renjie; Cai, Baoping

    2013-02-01

    The charging characteristics of micrometer sized aqueous droplets have attracted more and more attentions due to the development of the microfluidics technology since the electrophoretic motion of a charged droplet can be used as the droplet actuation method. This work proposed a novel method of investigating the charging characteristics of micrometer sized aqueous droplets based on parallel plate capacitor model. With this method, the effects of the electric field strength, electrolyte concentration, and ion species on the charging characteristics of the aqueous droplets was investigated. Experimental results showed that the charging characteristics of micrometer sized droplets can be investigated by this method.

  20. Optimization Design Model of Functional Gradient Thermal Barrier Coating Material by Using Parallel Computation

    Directory of Open Access Journals (Sweden)

    Chen Zhao

    2016-01-01

    Full Text Available It is important for huge ship to find the ceramic/metal functional gradient thermal barrier coating materials. A parallel computation model is built for optimization design of three-dimensional ceramic/metal functionally gradient thermal barrier coating material. According to the control equation and initial-boundary conditions, the heat transfer problem is considered, and numerical algorithms of optimization design is constructed by adapting difference method. The numerical results shows that gradient thermal barrier coating material can improve the function of material.

  1. Parallel helix bundles and ion channels: molecular modeling via simulated annealing and restrained molecular dynamics.

    OpenAIRE

    Kerr, I. D.; Sankararamakrishnan, R; Smart, O.S.; Sansom, M S

    1994-01-01

    A parallel bundle of transmembrane (TM) alpha-helices surrounding a central pore is present in several classes of ion channel, including the nicotinic acetylcholine receptor (nAChR). We have modeled bundles of hydrophobic and of amphipathic helices using simulated annealing via restrained molecular dynamics. Bundles of Ala20 helices, with N = 4, 5, or 6 helices/bundle were generated. For all three N values the helices formed left-handed coiled coils, with pitches ranging from 160 A (N = 4) to...

  2. Hybrid Parallel Programming Models for AMR Neutron Monte-Carlo Transport

    Science.gov (United States)

    Dureau, David; Poëtte, Gaël

    2014-06-01

    This paper deals with High Performance Computing (HPC) applied to neutron transport theory on complex geometries, thanks to both an Adaptive Mesh Refinement (AMR) algorithm and a Monte-Carlo (MC) solver. Several Parallelism models are presented and analyzed in this context, among them shared memory and distributed memory ones such as Domain Replication and Domain Decomposition, together with Hybrid strategies. The study is illustrated by weak and strong scalability tests on complex benchmarks on several thousands of cores thanks to the petaflopic supercomputer Tera100.

  3. Optimizing ion channel models using a parallel genetic algorithm on graphical processors.

    Science.gov (United States)

    Ben-Shalom, Roy; Aviv, Amit; Razon, Benjamin; Korngreen, Alon

    2012-01-01

    We have recently shown that we can semi-automatically constrain models of voltage-gated ion channels by combining a stochastic search algorithm with ionic currents measured using multiple voltage-clamp protocols. Although numerically successful, this approach is highly demanding computationally, with optimization on a high performance Linux cluster typically lasting several days. To solve this computational bottleneck we converted our optimization algorithm for work on a graphical processing unit (GPU) using NVIDIA's CUDA. Parallelizing the process on a Fermi graphic computing engine from NVIDIA increased the speed ∼180 times over an application running on an 80 node Linux cluster, considerably reducing simulation times. This application allows users to optimize models for ion channel kinetics on a single, inexpensive, desktop "super computer," greatly reducing the time and cost of building models relevant to neuronal physiology. We also demonstrate that the point of algorithm parallelization is crucial to its performance. We substantially reduced computing time by solving the ODEs (Ordinary Differential Equations) so as to massively reduce memory transfers to and from the GPU. This approach may be applied to speed up other data intensive applications requiring iterative solutions of ODEs.

  4. SiGN-SSM: open source parallel software for estimating gene networks with state space models.

    Science.gov (United States)

    Tamada, Yoshinori; Yamaguchi, Rui; Imoto, Seiya; Hirose, Osamu; Yoshida, Ryo; Nagasaki, Masao; Miyano, Satoru

    2011-04-15

    SiGN-SSM is an open-source gene network estimation software able to run in parallel on PCs and massively parallel supercomputers. The software estimates a state space model (SSM), that is a statistical dynamic model suitable for analyzing short time and/or replicated time series gene expression profiles. SiGN-SSM implements a novel parameter constraint effective to stabilize the estimated models. Also, by using a supercomputer, it is able to determine the gene network structure by a statistical permutation test in a practical time. SiGN-SSM is applicable not only to analyzing temporal regulatory dependencies between genes, but also to extracting the differentially regulated genes from time series expression profiles. SiGN-SSM is distributed under GNU Affero General Public Licence (GNU AGPL) version 3 and can be downloaded at http://sign.hgc.jp/signssm/. The pre-compiled binaries for some architectures are available in addition to the source code. The pre-installed binaries are also available on the Human Genome Center supercomputer system. The online manual and the supplementary information of SiGN-SSM is available on our web site. tamada@ims.u-tokyo.ac.jp.

  5. The generic simulation cell method for developing extensible, efficient and readable parallel computational models

    Science.gov (United States)

    Honkonen, I.

    2014-07-01

    I present a method for developing extensible and modular computational models without sacrificing serial or parallel performance or source code readability. By using a generic simulation cell method I show that it is possible to combine several distinct computational models to run in the same computational grid without requiring any modification of existing code. This is an advantage for the development and testing of computational modeling software as each submodel can be developed and tested independently and subsequently used without modification in a more complex coupled program. Support for parallel programming is also provided by allowing users to select which simulation variables to transfer between processes via a Message Passing Interface library. This allows the communication strategy of a program to be formalized by explicitly stating which variables must be transferred between processes for the correct functionality of each submodel and the entire program. The generic simulation cell class presented here requires a C++ compiler that supports variadic templates which were standardized in 2011 (C++11). The code is available at: https://github.com/nasailja/gensimcell for everyone to use, study, modify and redistribute; those that do are kindly requested to cite this work.

  6. The generic simulation cell method for developing extensible, efficient and readable parallel computational models

    Directory of Open Access Journals (Sweden)

    I. Honkonen

    2014-07-01

    Full Text Available I present a method for developing extensible and modular computational models without sacrificing serial or parallel performance or source code readability. By using a generic simulation cell method I show that it is possible to combine several distinct computational models to run in the same computational grid without requiring any modification of existing code. This is an advantage for the development and testing of computational modeling software as each submodel can be developed and tested independently and subsequently used without modification in a more complex coupled program. Support for parallel programming is also provided by allowing users to select which simulation variables to transfer between processes via a Message Passing Interface library. This allows the communication strategy of a program to be formalized by explicitly stating which variables must be transferred between processes for the correct functionality of each submodel and the entire program. The generic simulation cell class presented here requires a C++ compiler that supports variadic templates which were standardized in 2011 (C++11. The code is available at: https://github.com/nasailja/gensimcell for everyone to use, study, modify and redistribute; those that do are kindly requested to cite this work.

  7. Vlasov modelling of parallel transport in a tokamak scrape-off layer

    Energy Technology Data Exchange (ETDEWEB)

    Manfredi, G [Institut de Physique et Chimie des Materiaux, CNRS and Universite de Strasbourg, BP 43, F-67034 Strasbourg (France); Hirstoaga, S [INRIA Nancy Grand-Est and Institut de Recherche en Mathematiques Avancees, 7 rue Rene Descartes, F-67084 Strasbourg (France); Devaux, S, E-mail: Giovanni.Manfredi@ipcms.u-strasbg.f, E-mail: hirstoaga@math.unistra.f, E-mail: Stephane.Devaux@ccfe.ac.u [JET-EFDA, Culham Science Centre, Abingdon, OX14 3DB (United Kingdom)

    2011-01-15

    A one-dimensional Vlasov-Poisson model is used to describe the parallel transport in a tokamak scrape-off layer. Thanks to a recently developed 'asymptotic-preserving' numerical scheme, it is possible to lift numerical constraints on the time step and grid spacing, which are no longer limited by, respectively, the electron plasma period and Debye length. The Vlasov approach provides a good velocity-space resolution even in regions of low density. The model is applied to the study of parallel transport during edge-localized modes, with particular emphasis on the particles and energy fluxes on the divertor plates. The numerical results are compared with analytical estimates based on a free-streaming model, with good general agreement. An interesting feature is the observation of an early electron energy flux, due to suprathermal electrons escaping the ions' attraction. In contrast, the long-time evolution is essentially quasi-neutral and dominated by the ion dynamics.

  8. Analysis and Modeling of Parallel Photovoltaic Systems under Partial Shading Conditions

    Science.gov (United States)

    Buddala, Santhoshi Snigdha

    Since the industrial revolution, fossil fuels like petroleum, coal, oil, natural gas and other non-renewable energy sources have been used as the primary energy source. The consumption of fossil fuels releases various harmful gases into the atmosphere as byproducts which are hazardous in nature and they tend to deplete the protective layers and affect the overall environmental balance. Also the fossil fuels are bounded resources of energy and rapid depletion of these sources of energy, have prompted the need to investigate alternate sources of energy called renewable energy. One such promising source of renewable energy is the solar/photovoltaic energy. This work focuses on investigating a new solar array architecture with solar cells connected in parallel configuration. By retaining the structural simplicity of the parallel architecture, a theoretical small signal model of the solar cell is proposed and modeled to analyze the variations in the module parameters when subjected to partial shading conditions. Simulations were run in SPICE to validate the model implemented in Matlab. The voltage limitations of the proposed architecture are addressed by adopting a simple dc-dc boost converter and evaluating the performance of the architecture in terms of efficiencies by comparing it with the traditional architectures. SPICE simulations are used to compare the architectures and identify the best one in terms of power conversion efficiency under partial shading conditions.

  9. A Review on Large Scale Graph Processing Using Big Data Based Parallel Programming Models

    Directory of Open Access Journals (Sweden)

    Anuraj Mohan

    2017-02-01

    Full Text Available Processing big graphs has become an increasingly essential activity in various fields like engineering, business intelligence and computer science. Social networks and search engines usually generate large graphs which demands sophisticated techniques for social network analysis and web structure mining. Latest trends in graph processing tend towards using Big Data platforms for parallel graph analytics. MapReduce has emerged as a Big Data based programming model for the processing of massively large datasets. Apache Giraph, an open source implementation of Google Pregel which is based on Bulk Synchronous Parallel Model (BSP is used for graph analytics in social networks like Facebook. This proposed work is to investigate the algorithmic effects of the MapReduce and BSP model on graph problems. The triangle counting problem in graphs is considered as a benchmark and evaluations are made on the basis of time of computation on the same cluster, scalability in relation to graph and cluster size, resource utilization and the structure of the graph.

  10. Phase transitions in Thirring’s model

    Science.gov (United States)

    Campa, Alessandro; Casetti, Lapo; Latella, Ivan; Pérez-Madrid, Agustín; Ruffo, Stefano

    2016-07-01

    In his pioneering work on negative specific heat, Walter Thirring introduced a model that is solvable in the microcanonical ensemble. Here, we give a complete description of the phase-diagram of this model in both the microcanonical and the canonical ensemble, highlighting the main features of ensemble inequivalence. In both ensembles, we find a line of first-order phase transitions which ends in a critical point. However, neither the line nor the point have the same location in the phase-diagram of the two ensembles. We also show that the microcanonical and canonical critical points can be analytically related to each other using a Landau expansion of entropy and free energy, respectively, in analogy with what has been done in (Cohen and Mukamel 2012 J. Stat. Mech. P12017). Examples of systems with certain symmetries restricting the Landau expansion have been considered in this reference, while no such restrictions are present in Thirring’s model. This leads to a phase diagram that can be seen as a prototype for what happens in systems of particles with kinematic degrees of freedom dominated by long-range interactions.

  11. Parallel flow accumulation algorithms for graphical processing units with application to RUSLE model

    Science.gov (United States)

    Sten, Johan; Lilja, Harri; Hyväluoma, Jari; Westerholm, Jan; Aspnäs, Mats

    2016-04-01

    Digital elevation models (DEMs) are widely used in the modeling of surface hydrology, which typically includes the determination of flow directions and flow accumulation. The use of high-resolution DEMs increases the accuracy of flow accumulation computation, but as a drawback, the computational time may become excessively long if large areas are analyzed. In this paper we investigate the use of graphical processing units (GPUs) for efficient flow accumulation calculations. We present two new parallel flow accumulation algorithms based on dependency transfer and topological sorting and compare them to previously published flow transfer and indegree-based algorithms. We benchmark the GPU implementations against industry standards, ArcGIS and SAGA. With the flow-transfer D8 flow routing model and binary input data, a speed up of 19 is achieved compared to ArcGIS and 15 compared to SAGA. We show that on GPUs the topological sort-based flow accumulation algorithm leads on average to a speedup by a factor of 7 over the flow-transfer algorithm. Thus a total speed up of the order of 100 is achieved. We test the algorithms by applying them to the Revised Universal Soil Loss Equation (RUSLE) erosion model. For this purpose we present parallel versions of the slope, LS factor and RUSLE algorithms and show that the RUSLE erosion results for an area of 12 km x 24 km containing 72 million cells can be calculated in less than a second. Since flow accumulation is needed in many hydrological models, the developed algorithms may find use in many other applications than RUSLE modeling. The algorithm based on topological sorting is particularly promising for dynamic hydrological models where flow accumulations are repeatedly computed over an unchanged DEM.

  12. Tri-Lab data models and format (DMF) project: parallel I/O and data exchange

    Energy Technology Data Exchange (ETDEWEB)

    Cook, L. M.; Matarazzo, C. M.; Rathkopf, J.

    1998-10-01

    A central goal of the ASCI program is to push simulation and modeling for Science-based Stockpile Stewardship to unprecedented levels. ASCI applications will use extremely high-fidelity models, on the order of one billion cells, to generate terabytes of raw data. Such vast amounts of data produced by these supercomputing applications will overwhelm scientists, whose efforts to understand their results are hindered by inadequate visualization and data management tools. Much of the Scientific Data Management (SDM) effort concerns managing the large and complex data emerging from these simulation codes. One particular area for which commercial and scalable solutions do not exist is in Parallel I/O and data exchange between simulations. To address these needs, the Tri-lab Data Models and Formats effort of the SDM project is developing capabilities to enable the capturing and sharing of simulation data.

  13. Exploiting multi-scale parallelism for large scale numerical modelling of laser wakefield accelerators

    CERN Document Server

    Fonseca, Ricardo A; Fiúza, Frederico; Davidson, Asher; Tsung, Frank S; Mori, Warren B; Silva, Luís O

    2013-01-01

    A new generation of laser wakefield accelerators, supported by the extreme accelerating fields generated in the interaction of PW-Class lasers and underdense targets, promises the production of high quality electron beams in short distances for multiple applications. Achieving this goal will rely heavily on numerical modeling for further understanding of the underlying physics and identification of optimal regimes, but large scale modeling of these scenarios is computationally heavy and requires efficient use of state-of-the-art Petascale supercomputing systems. We discuss the main difficulties involved in running these simulations and the new developments implemented in the OSIRIS framework to address these issues, ranging from multi-dimensional dynamic load balancing and hybrid distributed / shared memory parallelism to the vectorization of the PIC algorithm. We present the results of the OASCR Joule Metric program on the issue of large scale modeling of LWFA, demonstrating speedups of over 1 order of magni...

  14. Parameters Design for a Parallel Hybrid Electric Bus Using Regenerative Brake Model

    Directory of Open Access Journals (Sweden)

    Zilin Ma

    2014-01-01

    Full Text Available A design methodology which uses the regenerative brake model is introduced to determine the major system parameters of a parallel electric hybrid bus drive train. Hybrid system parameters mainly include the power rating of internal combustion engine (ICE, gear ratios of transmission, power rating, and maximal torque of motor, power, and capacity of battery. The regenerative model is built in the vehicle model to estimate the regenerative energy in the real road conditions. The design target is to ensure that the vehicle meets the specified vehicle performance, such as speed and acceleration, and at the same time, operates the ICE within an expected speed range. Several pairs of parameters are selected from the result analysis, and the fuel saving result in the road test shows that a 25% reduction is achieved in fuel consumption.

  15. Experimental modelling of transverse oscillations in aquaculture netting parallel to the flow — Sounds baffling

    Science.gov (United States)

    Johnson, Andrew; Balash, Cheslav

    2015-06-01

    Numerous studies have been undertaken to improve the viability, durability and suitability of materials and methods used for aquaculture enclosures. While many of the previous studies considered macro-deformation of nets, there is a paucity of information on netting micro-deformation. When aquaculture pens are towed, industry operators have observed the motion described as "baffling" — the transverse oscillation of the net planes parallel and near parallel to the flow. The difficulty to observe and assess baffling motion in a controlled experimental environment is to sufficiently reproduce netting boundary conditions and the flow environment experienced at sea. The focus of the present study was to develop and assess experimental methods for visualisation and quantification of these transverse oscillations. Four net-rig configurations with varied boundary conditions and model-netting properties were tested in a flume tank. While the Reynolds number was not equivalent to full-scale, usage of the pliable and fine mesh model netting that enabled baffling to develop at low flow velocities was deemed to be of a larger relevance to this initial study. Baffling was observed in the testing frame that constrained the net sheet on the leading edge, similarly to a flag attachment onto a pole. Baffling motion increased the hydrodynamic drag of the net by 35%-58% when compared to the previously developed formula for taut net sheets aligned parallel to the flow. Furthermore, it was found that the drag due to baffling decreased with the increasing velocity over the studied Reynolds numbers (below 200); and the drag coefficient was non-linear for Reynolds numbers below 120. It is hypothesised that baffling motion is initially propagated by vortex shedding of the netting twine which causes the netting to oscillate; there after the restoring force causes unstable pressure differences on each side of the netting which excites the amplitude of the netting oscillations.

  16. Theory and modelling of nanocarbon phase stability.

    Energy Technology Data Exchange (ETDEWEB)

    Barnard, A. S.

    2006-01-01

    The transformation of nanodiamonds into carbon-onions (and vice versa) has been observed experimentally and has been modeled computationally at various levels of sophistication. Also, several analytical theories have been derived to describe the size, temperature and pressure dependence of this phase transition. However, in most cases a pure carbon-onion or nanodiamond is not the final product. More often than not an intermediary is formed, known as a bucky-diamond, with a diamond-like core encased in an onion-like shell. This has prompted a number of studies investigating the relative stability of nanodiamonds, bucky-diamonds, carbon-onions and fullerenes, in various size regimes. Presented here is a review outlining results of numerous theoretical studies examining the phase diagrams and phase stability of carbon nanoparticles, to clarify the complicated relationship between fullerenic and diamond structures at the nanoscale.

  17. CFD Modeling of Mixed-Phase Icing

    Science.gov (United States)

    Zhang, Lifen; Liu, Zhenxia; Zhang, Fei

    2016-12-01

    Ice crystal ingestion at high altitude has been reported to be a threat for safe operation of aero-engine in recently. Ice crystals do not accrete on external surface because of cold environment. But when they enter the core flow of aero-engine, ice crystals melt partially into droplets due to higher temperature. Air-droplets-ice crystal is the mixed-phase, which will give rise to ice accretion on static and rotating components in compressor. Subsequently, compressor surge and engine shutdowns may occur. To provide a numerical tool to analyze this in detail, a numerical method was developed in this study. The mixed phase flow was solved using Eulerian-Lagrangian method. The dispersed phase was represented by one-way coupling. A thermodynamic model that considers mass and energy balance with ice crystals and droplets was presented as well. The icing code was implemented by the user-defined function of Fluent. The method of ice accretion under mixed-phase conditions was validated by comparing the results simulated on a cylinder with experimental data derived from literature. The predicted ice shape and mass agree with these data, thereby confirming the validity of the numerical method developed in this research for mixed-phase conditions.

  18. High-performance phase-field modeling

    KAUST Repository

    Vignal, Philippe

    2015-04-27

    Many processes in engineering and sciences involve the evolution of interfaces. Among the mathematical frameworks developed to model these types of problems, the phase-field method has emerged as a possible solution. Phase-fields nonetheless lead to complex nonlinear, high-order partial differential equations, whose solution poses mathematical and computational challenges. Guaranteeing some of the physical properties of the equations has lead to the development of efficient algorithms and discretizations capable of recovering said properties by construction [2, 5]. This work builds-up on these ideas, and proposes novel discretization strategies that guarantee numerical energy dissipation for both conserved and non-conserved phase-field models. The temporal discretization is based on a novel method which relies on Taylor series and ensures strong energy stability. It is second-order accurate, and can also be rendered linear to speed-up the solution process [4]. The spatial discretization relies on Isogeometric Analysis, a finite element method that possesses the k-refinement technology and enables the generation of high-order, high-continuity basis functions. These basis functions are well suited to handle the high-order operators present in phase-field models. Two-dimensional and three dimensional results of the Allen-Cahn, Cahn-Hilliard, Swift-Hohenberg and phase-field crystal equation will be presented, which corroborate the theoretical findings, and illustrate the robustness of the method. Results related to more challenging examples, namely the Navier-Stokes Cahn-Hilliard and a diusion-reaction Cahn-Hilliard system, will also be presented. The implementation was done in PetIGA and PetIGA-MF, high-performance Isogeometric Analysis frameworks [1, 3], designed to handle non-linear, time-dependent problems.

  19. Parallel Execution of Functional Mock-up Units in Buildings Modeling

    Energy Technology Data Exchange (ETDEWEB)

    Ozmen, Ozgur [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Nutaro, James J. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); New, Joshua Ryan [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

    2016-06-30

    A Functional Mock-up Interface (FMI) defines a standardized interface to be used in computer simulations to develop complex cyber-physical systems. FMI implementation by a software modeling tool enables the creation of a simulation model that can be interconnected, or the creation of a software library called a Functional Mock-up Unit (FMU). This report describes an FMU wrapper implementation that imports FMUs into a C++ environment and uses an Euler solver that executes FMUs in parallel using Open Multi-Processing (OpenMP). The purpose of this report is to elucidate the runtime performance of the solver when a multi-component system is imported as a single FMU (for the whole system) or as multiple FMUs (for different groups of components as sub-systems). This performance comparison is conducted using two test cases: (1) a simple, multi-tank problem; and (2) a more realistic use case based on the Modelica Buildings Library. In both test cases, the performance gains are promising when each FMU consists of a large number of states and state events that are wrapped in a single FMU. Load balancing is demonstrated to be a critical factor in speeding up parallel execution of multiple FMUs.

  20. A parallel process growth model of avoidant personality disorder symptoms and personality traits.

    Science.gov (United States)

    Wright, Aidan G C; Pincus, Aaron L; Lenzenweger, Mark F

    2013-07-01

    Avoidant personality disorder (AVPD), like other personality disorders, has historically been construed as a highly stable disorder. However, results from a number of longitudinal studies have found that the symptoms of AVPD demonstrate marked change over time. Little is known about which other psychological systems are related to this change. Although cross-sectional research suggests a strong relationship between AVPD and personality traits, no work has examined the relationship of their change trajectories. The current study sought to establish the longitudinal relationship between AVPD and basic personality traits using parallel process growth curve modeling. Parallel process growth curve modeling was applied to the trajectories of AVPD and basic personality traits from the Longitudinal Study of Personality Disorders (Lenzenweger, M. F., 2006, The longitudinal study of personality disorders: History, design considerations, and initial findings. Journal of Personality Disorders, 20, 645-670. doi:10.1521/pedi.2006.20.6.645), a naturalistic, prospective, multiwave, longitudinal study of personality disorder, temperament, and normal personality. The focus of these analyses is on the relationship between the rates of change in both AVPD symptoms and basic personality traits. AVPD symptom trajectories demonstrated significant negative relationships with the trajectories of interpersonal dominance and affiliation, and a significant positive relationship to rates of change in neuroticism. These results provide some of the first compelling evidence that trajectories of change in PD symptoms and personality traits are linked. These results have important implications for the ways in which temporal stability is conceptualized in AVPD specifically, and PD in general.

  1. Fisher's model and the genomics of adaptation: restricted pleiotropy, heterogenous mutation, and parallel evolution.

    Science.gov (United States)

    Chevin, Luis-Miguel; Martin, Guillaume; Lenormand, Thomas

    2010-11-01

    Genetic theories of adaptation generally overlook the genes in which beneficial substitutions occur, and the likely variation in their mutational effects. We investigate the consequences of heterogeneous mutational effects among loci on the genetics of adaptation. We use a generalization of Fisher's geometrical model, which assumes multivariate Gaussian stabilizing selection on multiple characters. In our model, mutation has a distinct variance-covariance matrix of phenotypic effects for each locus. Consequently, the distribution of selection coefficients s varies across loci. We assume each locus can only affect a limited number of independent linear combinations of phenotypic traits (restricted pleiotropy), which differ among loci, an effect we term "orientation heterogeneity." Restricted pleiotropy can sharply reduce the overall proportion of beneficial mutations. Orientation heterogeneity has little impact on the shape of the genomic distribution, but can substantially increase the probability of parallel evolution (the repeated fixation of beneficial mutations at the same gene in independent populations), which is highest with low pleiotropy. We also consider variation in the degree of pleiotropy and in the mean s across loci. The latter impacts the genomic distribution of s, but has a much milder effect on parallel evolution. We discuss these results in the light of evolution experiments. © 2010 The Author(s). Evolution© 2010 The Society for the Study of Evolution.

  2. Parallel Solver for Diffuse Optical Tomography on Realistic Head Models with Scattering and Clear Regions.

    Science.gov (United States)

    Placati, Silvio; Guermandi, Marco; Samore, Andrea; Franchi Scarselli, Eleonora; Guerrieri, Roberto

    2015-11-26

    Diffuse Optical Tomography is an imaging technique based on evaluating how light propagates within the human head to obtain functional information about the brain. Precision in reconstructing such an optical properties map is highly affected by the accuracy of the light propagation model implemented, which needs to take into account the presence of clear and scattering tissues. We present a numerical solver based on the radiosity-diffusion model integrating the anatomical information provided by a structural MRI. The solver is designed to run on parallel heterogeneous platforms based on multiple GPUs and CPUs. We demonstrate how the solver provides a 7x speed-up over an isotropic-scattered parallel Monte Carlo engine based on a Radiative Transport Equation for a domain composed of 2 millions voxels, along with a significant improvement in accuracy. The speed-up greatly increases for larger domains, allowing us to compute the light distribution of a full human head ( 3 million voxels) in 116 seconds for the platform used.

  3. Parallelization Load Balance Strategy for a Global Grid-Point Model

    Institute of Scientific and Technical Information of China (English)

    WU Xiangjun; CHEN Dehui; SONG Junqiang; JIN Zhiyan; YANG Xuesheng; ZHANG Hongliang

    2010-01-01

    The Global/Regional Assimilation and PrEdiction System(GRAPES)is a new-generation operational numerical weather prediction(NWP)model developed by the China Meteorological Administration(CMA).It is a grid-point model with a code structure different from that of spectral models used in other operational NWP centers such as the European Centre for Medium-Range Weather Forecasts(ECMWF),National Centers for Environmental Prediction(NCEP),and Japan Meteorological Agency(JMA),especially in the context of parallel computing.In the GRAPES global model,a semi-implicit semi-Lagrangian scheme is used for the discretization over a sphere,which requires careful planning for the busy communications between the arrays of processors,because the Lagrangian differential scheme results in shortened trajectories interpolated between the grid points at the poles and in the associated adjacent areas.This means that the latitude-longitude partitioning is more complex for the polar processors.Therefore,a parallel strategy with efficient computation,balanced load,and synchronous communication shall be developed.In this paper,a message passing approach based on MPI(Message Passing Interface)group communication is proposed.Its key-point is to group the polar processors in row with matrix-topology during the processor partitioning.A load balance task distribution algorithm is also discussed.Test runs on the IBM-cluster 1600 at CMA show that the new algorithm is of desired scalability,and the readjusted load balance scheme can reduce the absolute wall clock time by 10% or more.The quasi-operational runs of the model demonstrate that the wall clock time secured by the strategy meets the real-time needs of NWP operations.

  4. Quark Matter in a Parallel Electric and Magnetic Field Background: Equilibrated Chiral Density Effect on Chiral Phase Transition

    CERN Document Server

    Ruggieri, M

    2016-01-01

    In this article we study spontaneous chiral symmetry breaking for quark matter in the background of an electric-magnetic flux tube with static, homogeneous and parallel electric field $\\bm E$ and magnetic field $\\bm B$. We use a Nambu-Jona-Lasinio model with a local kernel interaction to compute the relevant quantities to describe chiral symmetry breaking at finite temperature for a wide range of $E$ and $B$. We study the effect of the flux tube background on inverse catalysis of chiral symmetry breaking for $E$ and $B$ of the same order of magnitude. We then focus on the effect of equilibration of chiral density, $n_5$, produced dynamically by axial anomaly on the critical temperature. The equilibration of $n_5$, a consequence of chirality flipping processes in the thermal bath, allows for the introduction of the chiral chemical potential, $\\mu_5$, which is computed self-consistently as a function of temperature and field strength by coupling the number equation to the gap equation. We find that even if chir...

  5. Quark matter in a parallel electric and magnetic field background: Chiral phase transition and equilibration of chiral density

    Science.gov (United States)

    Ruggieri, M.; Peng, G. X.

    2016-05-01

    In this article, we study spontaneous chiral symmetry breaking for quark matter in the background of static and homogeneous parallel electric field E and magnetic field B . We use a Nambu-Jona-Lasinio model with a local kernel interaction to compute the relevant quantities to describe chiral symmetry breaking at a finite temperature for a wide range of E and B . We study the effect of this background on the inverse catalysis of chiral symmetry breaking for E and B of the same order of magnitude. We then focus on the effect of the equilibration of chiral density n5 , produced dynamically by an axial anomaly on the critical temperature. The equilibration of n5 , a consequence of chirality-flipping processes in the thermal bath, allows for the introduction of the chiral chemical potential μ5, which is computed self-consistently as a function of the temperature and field strength by coupling the number equation to the gap equation and solving the two within an expansion in E /T2 , B /T2 , and μ52/T2 . We find that even if chirality is produced and equilibrates within a relaxation time τM , it does not change drastically the thermodynamics, with particular reference to the inverse catalysis induced by the external fields, as long as the average μ5 at equilibrium is not too large.

  6. SEISMIC MODELING ENGINES PHASE 1 FINAL REPORT

    Energy Technology Data Exchange (ETDEWEB)

    BRUCE P. MARION

    2006-02-09

    Seismic modeling is a core component of petroleum exploration and production today. Potential applications include modeling the influence of dip on anisotropic migration; source/receiver placement in deviated-well three-dimensional surveys for vertical seismic profiling (VSP); and the generation of realistic data sets for testing contractor-supplied migration algorithms or for interpreting AVO (amplitude variation with offset) responses. This project was designed to extend the use of a finite-difference modeling package, developed at Lawrence Berkeley Laboratories, to the advanced applications needed by industry. The approach included a realistic, easy-to-use 2-D modeling package for the desktop of the practicing geophysicist. The feasibility of providing a wide-ranging set of seismic modeling engines was fully demonstrated in Phase I. The technical focus was on adding variable gridding in both the horizontal and vertical directions, incorporating attenuation, improving absorbing boundary conditions and adding the optional coefficient finite difference methods.

  7. Phase Fluctuations in the ABC Model

    Science.gov (United States)

    Bodineau, T.; Derrida, B.

    2011-11-01

    We analyze the fluctuations of the steady state profiles in the modulated phase of the ABC model. For a system of L sites, the steady state profiles move on a microscopic time scale of order L 3. The variance of their displacement is computed in terms of the macroscopic steady state profiles by using fluctuating hydrodynamics and large deviations. Our analytical prediction for this variance is confirmed by the results of numerical simulations.

  8. Climate systems modeling on massively parallel processing computers at Lawrence Livermore National Laboratory

    Energy Technology Data Exchange (ETDEWEB)

    Wehner, W.F.; Mirin, A.A.; Bolstad, J.H. [and others

    1996-09-01

    A comprehensive climate system model is under development at Lawrence Livermore National Laboratory. The basis for this model is a consistent coupling of multiple complex subsystem models, each describing a major component of the Earth`s climate. Among these are general circulation models of the atmosphere and ocean, a dynamic and thermodynamic sea ice model, and models of the chemical processes occurring in the air, sea water, and near-surface land. The computational resources necessary to carry out simulations at adequate spatial resolutions for durations of climatic time scales exceed those currently available. Distributed memory massively parallel processing (MPP) computers promise to affordably scale to the computational rates required by directing large numbers of relatively inexpensive processors onto a single problem. We have developed a suite of routines designed to exploit current generation MPP architectures via domain and functional decomposition strategies. These message passing techniques have been implemented in each of the component models and in their coupling interfaces. Production runs of the atmospheric and oceanic components performed on the National Environmental Supercomputing Center (NESC) Cray T3D are described.

  9. Parallelization and High-Performance Computing Enables Automated Statistical Inference of Multi-scale Models.

    Science.gov (United States)

    Jagiella, Nick; Rickert, Dennis; Theis, Fabian J; Hasenauer, Jan

    2017-02-22

    Mechanistic understanding of multi-scale biological processes, such as cell proliferation in a changing biological tissue, is readily facilitated by computational models. While tools exist to construct and simulate multi-scale models, the statistical inference of the unknown model parameters remains an open problem. Here, we present and benchmark a parallel approximate Bayesian computation sequential Monte Carlo (pABC SMC) algorithm, tailored for high-performance computing clusters. pABC SMC is fully automated and returns reliable parameter estimates and confidence intervals. By running the pABC SMC algorithm for ∼10(6) hr, we parameterize multi-scale models that accurately describe quantitative growth curves and histological data obtained in vivo from individual tumor spheroid growth in media droplets. The models capture the hybrid deterministic-stochastic behaviors of 10(5)-10(6) of cells growing in a 3D dynamically changing nutrient environment. The pABC SMC algorithm reliably converges to a consistent set of parameters. Our study demonstrates a proof of principle for robust, data-driven modeling of multi-scale biological systems and the feasibility of multi-scale model parameterization through statistical inference.

  10. Influence of heterogeneity on rock strength and stiffness using discrete element method and parallel bond model

    Directory of Open Access Journals (Sweden)

    Spyridon Liakas

    2017-08-01

    Full Text Available The particulate discrete element method (DEM can be employed to capture the response of rock, provided that appropriate bonding models are used to cement the particles to each other. Simulations of laboratory tests are important to establish the extent to which those models can capture realistic rock behaviors. Hitherto the focus in such comparison studies has either been on homogeneous specimens or use of two-dimensional (2D models. In situ rock formations are often heterogeneous, thus exploring the ability of this type of models to capture heterogeneous material behavior is important to facilitate their use in design analysis. In situ stress states are basically three-dimensional (3D, and therefore it is important to develop 3D models for this purpose. This paper revisits an earlier experimental study on heterogeneous specimens, of which the relative proportions of weaker material (siltstone and stronger, harder material (sandstone were varied in a controlled manner. Using a 3D DEM model with the parallel bond model, virtual heterogeneous specimens were created. The overall responses in terms of variations in strength and stiffness with different percentages of weaker material (siltstone were shown to agree with the experimental observations. There was also a good qualitative agreement in the failure patterns observed in the experiments and the simulations, suggesting that the DEM data enabled analysis of the initiation of localizations and micro fractures in the specimens.

  11. Thermodynamics of the one-dimensional parallel Kawasaki model: Exact solution and mean-field approximations

    Science.gov (United States)

    Pazzona, Federico G.; Demontis, Pierfranco; Suffritti, Giuseppe B.

    2014-08-01

    The adsorption isotherm for the recently proposed parallel Kawasaki (PK) lattice-gas model [Phys. Rev. E 88, 062144 (2013), 10.1103/PhysRevE.88.062144] is calculated exactly in one dimension. To do so, a third-order difference equation for the grand-canonical partition function is derived and solved analytically. In the present version of the PK model, the attraction and repulsion effects between two neighboring particles and between a particle and a neighboring empty site are ruled, respectively, by the dimensionless parameters ϕ and θ. We discuss the inflections induced in the isotherms by situations of high repulsion, the role played by finite lattice sizes in the emergence of substeps, and the adequacy of the two most widely used mean-field approximations in lattice gases, namely, the Bragg-Williams and the Bethe-Peierls approximations.

  12. Angle- and distance-constrained matcher with parallel implementations for model-based vision

    Science.gov (United States)

    Anhalt, David J.; Raney, Steven; Severson, William E.

    1992-02-01

    The matching component of a model-based vision system hypothesizes one-to-one correspondences between 2D image features and locations on the 3D model. As part of Wright Laboratory's ARAGTAP program [a synthetic aperture radar (SAR) object recognition program], we developed a matcher that searches for feature matches based on the hypothesized object type and aspect angle. Search is constrained by the presumed accuracy of the hypothesized aspect angle and scale. These constraints reduce the search space for matches, thus improving match performance and quality. The algorithm is presented and compared with a matcher based on geometric hashing. Parallel implementations on commercially available shared memory MIMD machines, distributed memory MIMD machines, and SIMD machines are presented and contrasted.

  13. A self-calibrating robot based upon a virtual machine model of parallel kinematics

    DEFF Research Database (Denmark)

    Pedersen, David Bue; Eiríksson, Eyþór Rúnar; Hansen, Hans Nørgaard

    2016-01-01

    A delta-type parallel kinematics system for Additive Manufacturing has been created, which through a probing system can recognise its geometrical deviations from nominal and compensate for these in the driving inverse kinematic model of the machine. Novelty is that this model is derived from...... a virtual machine of the kinematics system, built on principles from geometrical metrology. Relevant mathematically non-trivial deviations to the ideal machine are identified and decomposed into elemental deviations. From these deviations, a routine is added to a physical machine tool, which allows...... it to recognise its own geometry by probing the vertical offset from tool point to the machine table, at positions in the horizontal plane. After automatic calibration the positioning error of the machine tool was reduced from an initial error after its assembly of ±170 µm to a calibrated error of ±3 µm...

  14. Fast and Parallel Spectral Transform Algorithms for Global Shallow Water Models

    Science.gov (United States)

    Jakob, Ruediger

    1993-01-01

    This dissertation examines spectral transform algorithms for the solution of the shallow water equations on the sphere and studies their implementation and performance on shared memory vector multiprocessors. Beginning with the standard spectral transform algorithm in vorticity divergence form and its implementation in the Fortran based parallel programming language Force, two modifications are researched. First, the transforms and matrices associated with the meridional derivatives of the associated Legendre functions are replaced by corresponding operations with the spherical harmonic coefficients. Second, based on the fast Fourier transform and the fast multipole method, a lower complexity algorithm is derived that uses fast transformations between Legendre and interior Fourier nodes, fast surface spherical truncation and a fast spherical Helmholtz solver. The first modification is fully implemented, and comparative performance data are obtained for varying resolution and number of processes, showing a significant storage saving and slightly reduced execution time on a Cray Y -MP 8/864. The important performance parameters for the spectral transform algorithm and its implementation on vector multiprocessors are determined and validated with the measured performance data. The second modification is described at the algorithmic level, but only the novel fast surface spherical truncation algorithm is implemented. This new multipole algorithm has lower complexity than the standard algorithm, and requires asymptotically only order N ^2log N operations per time step for a grid with order N^2 points. Because the global shallow water equations are similar to the horizontal dynamical component of general circulation models, the results can be applied to spectral transform numerical weather prediction and climate models. In general, the derived algorithms may speed up the solution of time dependent partial differential equations in spherical geometry. A performance model

  15. Parallel Monte Carlo transport modeling in the context of a time-dependent, three-dimensional multi-physics code

    Energy Technology Data Exchange (ETDEWEB)

    Procassini, R.J. [Lawrence Livermore National lab., CA (United States)

    1997-12-31

    The fine-scale, multi-space resolution that is envisioned for accurate simulations of complex weapons systems in three spatial dimensions implies flop-rate and memory-storage requirements that will only be obtained in the near future through the use of parallel computational techniques. Since the Monte Carlo transport models in these simulations usually stress both of these computational resources, they are prime candidates for parallelization. The MONACO Monte Carlo transport package, which is currently under development at LLNL, will utilize two types of parallelism within the context of a multi-physics design code: decomposition of the spatial domain across processors (spatial parallelism) and distribution of particles in a given spatial subdomain across additional processors (particle parallelism). This implementation of the package will utilize explicit data communication between domains (message passing). Such a parallel implementation of a Monte Carlo transport model will result in non-deterministic communication patterns. The communication of particles between subdomains during a Monte Carlo time step may require a significant level of effort to achieve a high parallel efficiency.

  16. A computationally efficient parallel Levenberg-Marquardt algorithm for highly parameterized inverse model analyses

    Science.gov (United States)

    Lin, Youzuo; O'Malley, Daniel; Vesselinov, Velimir V.

    2016-09-01

    Inverse modeling seeks model parameters given a set of observations. However, for practical problems because the number of measurements is often large and the model parameters are also numerous, conventional methods for inverse modeling can be computationally expensive. We have developed a new, computationally efficient parallel Levenberg-Marquardt method for solving inverse modeling problems with a highly parameterized model space. Levenberg-Marquardt methods require the solution of a linear system of equations which can be prohibitively expensive to compute for moderate to large-scale problems. Our novel method projects the original linear problem down to a Krylov subspace such that the dimensionality of the problem can be significantly reduced. Furthermore, we store the Krylov subspace computed when using the first damping parameter and recycle the subspace for the subsequent damping parameters. The efficiency of our new inverse modeling algorithm is significantly improved using these computational techniques. We apply this new inverse modeling method to invert for random transmissivity fields in 2-D and a random hydraulic conductivity field in 3-D. Our algorithm is fast enough to solve for the distributed model parameters (transmissivity) in the model domain. The algorithm is coded in Julia and implemented in the MADS computational framework (http://mads.lanl.gov). By comparing with Levenberg-Marquardt methods using standard linear inversion techniques such as QR or SVD methods, our Levenberg-Marquardt method yields a speed-up ratio on the order of ˜101 to ˜102 in a multicore computational environment. Therefore, our new inverse modeling method is a powerful tool for characterizing subsurface heterogeneity for moderate to large-scale problems.

  17. Cpl6: The New Extensible, High-Performance Parallel Coupler forthe Community Climate System Model

    Energy Technology Data Exchange (ETDEWEB)

    Craig, Anthony P.; Jacob, Robert L.; Kauffman, Brain; Bettge,Tom; Larson, Jay; Ong, Everest; Ding, Chris; He, Yun

    2005-03-24

    Coupled climate models are large, multiphysics applications designed to simulate the Earth's climate and predict the response of the climate to any changes in the forcing or boundary conditions. The Community Climate System Model (CCSM) is a widely used state-of-art climate model that has released several versions to the climate community over the past ten years. Like many climate models, CCSM employs a coupler, a functional unit that coordinates the exchange of data between parts of climate system such as the atmosphere and ocean. This paper describes the new coupler, cpl6, contained in the latest version of CCSM,CCSM3. Cpl6 introduces distributed-memory parallelism to the coupler, a class library for important coupler functions, and a standardized interface for component models. Cpl6 is implemented entirely in Fortran90 and uses Model Coupling Toolkit as the base for most of its classes. Cpl6 gives improved performance over previous versions and scales well on multiple platforms.

  18. Semiclassical modeling of quantum-mechanical multiparticle systems using parallel particle-in-cell methods

    Science.gov (United States)

    Dauger, Dean Edward

    2001-08-01

    We are successful in building a code that models many particle dynamic quantum systems by combining a semiclassical approximation of Feynman path integrals with parallel computing techniques (particle-in-cell) and numerical methods developed for simulating plasmas, establishing this approach as a viable technique for multiparticle time-dependent quantum mechanics. Run on high-performance parallel computers, this code applies semiclassical methods to simulate the time evolution of wavefunctions of many particles. We describe the analytical derivation and computational implementation of these techniques in detail. We present a study to thoroughly demonstrate the code's fidelity to quantum mechanics, resulting in innovative visualization and analysis techniques. We introduce and exhibit a method to address fermion particle statistics. We present studies of two quantum-mechanical problems: a two-electron, one- dimensional atom, resulting in high-quality extractions of one- and two-electron eigenstates, and electrostatic quasi-modes due to quantum effects in a hot electron plasma, relevant for predictions about stellar evolution. We supply discussions of alternative derivations, alternative implementations of the derivations, and an exploration of their consequences. Source code is shown throughout this dissertation. Finally, we present an extensive discussion of applications and extrapolations of this work, with suggestions for future direction.

  19. 3D multiphysics modeling of superconducting cavities with a massively parallel simulation suite

    Directory of Open Access Journals (Sweden)

    Oleksiy Kononenko

    2017-10-01

    Full Text Available Radiofrequency cavities based on superconducting technology are widely used in particle accelerators for various applications. The cavities usually have high quality factors and hence narrow bandwidths, so the field stability is sensitive to detuning from the Lorentz force and external loads, including vibrations and helium pressure variations. If not properly controlled, the detuning can result in a serious performance degradation of a superconducting accelerator, so an understanding of the underlying detuning mechanisms can be very helpful. Recent advances in the simulation suite ace3p have enabled realistic multiphysics characterization of such complex accelerator systems on supercomputers. In this paper, we present the new capabilities in ace3p for large-scale 3D multiphysics modeling of superconducting cavities, in particular, a parallel eigensolver for determining mechanical resonances, a parallel harmonic response solver to calculate the response of a cavity to external vibrations, and a numerical procedure to decompose mechanical loads, such as from the Lorentz force or piezoactuators, into the corresponding mechanical modes. These capabilities have been used to do an extensive rf-mechanical analysis of dressed TESLA-type superconducting cavities. The simulation results and their implications for the operational stability of the Linac Coherent Light Source-II are discussed.

  20. The Medial Temporal Lobe – Conduit of Parallel Connectivity: A model for Attention, Memory, and Perception.

    Directory of Open Access Journals (Sweden)

    Brian B. Mozaffari

    2014-11-01

    Full Text Available Based on the notion that the brain is equipped with a hierarchical organization, which embodies environmental contingencies across many time scales, this paper suggests that the medial temporal lobe (MTL – located deep in the hierarchy – serves as a bridge connecting supra to infra – MTL levels. Bridging the upper and lower regions of the hierarchy provides a parallel architecture that optimizes information flow between upper and lower regions to aid attention, encoding, and processing of quick complex visual phenomenon. Bypassing intermediate hierarchy levels, information conveyed through the MTL ‘bridge’ allows upper levels to make educated predictions about the prevailing context and accordingly select lower representations to increase the efficiency of predictive coding throughout the hierarchy. This selection or activation/deactivation is associated with endogenous attention. In the event that these ‘bridge’ predictions are inaccurate, this architecture enables the rapid encoding of novel contingencies. A review of hierarchical models in relation to memory is provided along with a new theory, Medial-temporal-lobe Conduit for Parallel Connectivity (MCPC. In this scheme, consolidation is considered as a secondary process, occurring after a MTL-bridged connection, which eventually allows upper and lower levels to access each other directly. With repeated reactivations, as contingencies become consolidated, less MTL activity is predicted. Finally, MTL bridging may aid processing transient but structured perceptual events, by allowing communication between upper and lower levels without calling on intermediate levels of representation.

  1. The medial temporal lobe-conduit of parallel connectivity: a model for attention, memory, and perception.

    Science.gov (United States)

    Mozaffari, Brian

    2014-01-01

    Based on the notion that the brain is equipped with a hierarchical organization, which embodies environmental contingencies across many time scales, this paper suggests that the medial temporal lobe (MTL)-located deep in the hierarchy-serves as a bridge connecting supra- to infra-MTL levels. Bridging the upper and lower regions of the hierarchy provides a parallel architecture that optimizes information flow between upper and lower regions to aid attention, encoding, and processing of quick complex visual phenomenon. Bypassing intermediate hierarchy levels, information conveyed through the MTL "bridge" allows upper levels to make educated predictions about the prevailing context and accordingly select lower representations to increase the efficiency of predictive coding throughout the hierarchy. This selection or activation/deactivation is associated with endogenous attention. In the event that these "bridge" predictions are inaccurate, this architecture enables the rapid encoding of novel contingencies. A review of hierarchical models in relation to memory is provided along with a new theory, Medial-temporal-lobe Conduit for Parallel Connectivity (MCPC). In this scheme, consolidation is considered as a secondary process, occurring after a MTL-bridged connection, which eventually allows upper and lower levels to access each other directly. With repeated reactivations, as contingencies become consolidated, less MTL activity is predicted. Finally, MTL bridging may aid processing transient but structured perceptual events, by allowing communication between upper and lower levels without calling on intermediate levels of representation.

  2. Phase transition in the ABC model

    Science.gov (United States)

    Clincy, M.; Derrida, B.; Evans, M. R.

    2003-06-01

    Recent studies have shown that one-dimensional driven systems can exhibit phase separation even if the dynamics is governed by local rules. The ABC model, which comprises three particle species that diffuse asymmetrically around a ring, shows anomalous coarsening into a phase separated steady state. In the limiting case in which the dynamics is symmetric and the parameter q describing the asymmetry tends to one, no phase separation occurs and the steady state of the system is disordered. In the present work, we consider the weak asymmetry regime q=exp(-β/N), where N is the system size, and study how the disordered state is approached. In the case of equal densities, we find that the system exhibits a second-order phase transition at some nonzero βc. The value of βc=2π(3) and the optimal profiles can be obtained by writing the exact large deviation functional. For nonequal densities, we write down mean-field equations and analyze some of their predictions.

  3. Parallelization of the integral equation formulation of the polarizable continuum model for higher-order response functions

    Science.gov (United States)

    Ferrighi, Lara; Frediani, Luca; Fossgaard, Eirik; Ruud, Kenneth

    2006-10-01

    We present a parallel implementation of the integral equation formalism of the polarizable continuum model for Hartree-Fock and density functional theory calculations of energies and linear, quadratic, and cubic response functions. The contributions to the free energy of the solute due to the polarizable continuum have been implemented using a master-slave approach with load balancing to ensure good scalability also on parallel machines with a slow interconnect. We demonstrate the good scaling behavior of the code through calculations of Hartree-Fock energies and linear, quadratic, and cubic response function for a modest-sized sample molecule. We also explore the behavior of the parallelization of the integral equation formulation of the polarizable continuum model code when used in conjunction with a recent scheme for the storage of two-electron integrals in the memory of the different slaves in order to achieve superlinear scaling in the parallel calculations.

  4. RCS estimation of linear and planar dipole phased arrays approximate model

    CERN Document Server

    Singh, Hema; Jha, Rakesh Mohan

    2016-01-01

    In this book, the RCS of a parallel-fed linear and planar dipole array is derived using an approximate method. The signal propagation within the phased array system determines the radar cross section (RCS) of phased array. The reflection and transmission coefficients for a signal at different levels of the phased-in scattering array system depend on the impedance mismatch and the design parameters. Moreover the mutual coupling effect in between the antenna elements is an important factor. A phased array system comprises of radiating elements followed by phase shifters, couplers, and terminating load impedance. These components lead to respective impedances towards the incoming signal that travels through them before reaching receive port of the array system. In this book, the RCS is approximated in terms of array factor, neglecting the phase terms. The mutual coupling effect is taken into account. The dependence of the RCS pattern on the design parameters is analyzed. The approximate model is established as a...

  5. Tectonic role of margin-parallel and margin-transverse faults during oblique subduction in the Southern Volcanic Zone of the Andes: Insights from Boundary Element Modeling

    Science.gov (United States)

    Stanton-Yonge, A.; Griffith, W. A.; Cembrano, J.; St. Julien, R.; Iturrieta, P.

    2016-09-01

    Obliquely convergent subduction margins develop trench-parallel faults shaping the regional architecture of orogenic belts and partitioning intraplate deformation. However, transverse faults also are common along most orogenic belts and have been largely neglected in slip partitioning analysis. Here we constrain the sense of slip and slip rates of differently oriented faults to assess whether and how transverse faults accommodate plate-margin slip arising from oblique subduction. We implement a forward 3-D boundary element method model of subduction at the Chilean margin evaluating the elastic response of intra-arc faults during different stages of the Andean subduction seismic cycle (SSC). Our model results show that the margin-parallel, NNE striking Liquiñe-Ofqui Fault System accommodates dextral-reverse slip during the interseismic period of the SSC, with oblique slip rates ranging between 1 and 7 mm/yr. NW striking faults exhibit sinistral-reverse slip during the interseismic phase of the SSC, displaying a maximum oblique slip of 1.4 mm/yr. ENE striking faults display dextral strike slip, with a slip rate of 0.85 mm/yr. During the SSC coseismic phase, all modeled faults switch their kinematics: NE striking fault become sinistral, whereas NW striking faults are normal dextral. Because coseismic tensile stress changes on NW faults reach 0.6 MPa at 10-15 km depth, it is likely that they can serve as transient magma pathways during this phase of the SSC. Our model challenges the existing paradigm wherein only margin-parallel faults account for slip partitioning: transverse faults are also capable of accommodating a significant amount of plate-boundary slip arising from oblique convergence.

  6. Advanced parallel computing for the coupled PCR-GLOBWB-MODFLOW model

    Science.gov (United States)

    Verkaik, Jarno; Schmitz, Oliver; Sutanudjaja, Edwin

    2017-04-01

    PCR-GLOBWB (https://github.com/UU-Hydro/PCR-GLOBWB_model) is a large-scale hydrological model intended for global to regional studies and developed at the Department of Physical Geography, Utrecht University (Netherlands). The latest version of the model can simulate terrestrial hydrological and water resource fluxes and storages with a typical spatial resolution of 5 arc-minutes (less than 10 km) at the global extent. One of the recent features in the model development is the inclusion of a global 2-layer MODFLOW model simulating groundwater lateral flow. This advanced feature enables us to simulate and assess the groundwater head dynamics at the global extent, including at regions with declining groundwater head problems. Unfortunately, the current coupled PCR-GLOBWB-MODFLOW requires long run times mainly attributed to the current inefficient parallel computing and coupling algorithm. In this work, we aim to improve it by setting-up a favorable river-basin partitioning manner that reduces I/O communication and optimizes load balance between PCR-GLOBWB and MODFLOW. We also aim to replace the MODFLOW-2000 in the current coupled model with MODFLOW-USG. This will allow us to use the new Parallel Krylov Solver (PKS) that can run with Message Passing Interface (MPI) and can be easily combined with Open Multi-Processing (OpenMP). The latest scaling test carried out on the Cartesius Dutch National supercomputer shows that the usage of MODFLOW-USG and new PKS solver can result in significant MODFLOW calculation speedups (up to 45). The encouraging result of this work opens a possibility for running the model with more detailed setup and at higher resolution. As MODFLOW-USG supports both structured and unstructured grids, this includes an opportunity to have a next generation of PCR-GLOBWB-MODFLOW model that has flexibility in grid design for its groundwater flow simulation (e.g. grid design can be used to focus along rivers and around wells, to discretize individual

  7. Efficacy and safety of bilastine in Japanese patients with perennial allergic rhinitis: A multicenter, randomized, double-blind, placebo-controlled, parallel-group phase III study

    OpenAIRE

    Kimihiro Okubo; Minoru Gotoh; Mikiya Asako; Yasuyuki Nomura; Michinori Togawa; Akihiro Saito; Takayuki Honda; Yoshihiro Ohashi

    2017-01-01

    Background: Bilastine, a novel non-sedating second-generation H1 antihistamine, has been approved in most European countries since 2010. This study aimed to evaluate the superiority of bilastine over placebo in Japanese patients with perennial allergic rhinitis (PAR). Methods: This randomized, double-blind, placebo-controlled, parallel-group, phase III study (trial registration number JapicCTI-142600) evaluated the effect of a 2-week treatment period with bilastine (20 mg once daily), fexo...

  8. Stem thrust prediction model for W-K-M double wedge parallel expanding gate valves

    Energy Technology Data Exchange (ETDEWEB)

    Eldiwany, B.; Alvarez, P.D. [Kalsi Engineering Inc., Sugar Land, TX (United States); Wolfe, K. [Electric Power Research Institute, Palo Alto, CA (United States)

    1996-12-01

    An analytical model for determining the required valve stem thrust during opening and closing strokes of W-K-M parallel expanding gate valves was developed as part of the EPRI Motor-Operated Valve Performance Prediction Methodology (EPRI MOV PPM) Program. The model was validated against measured stem thrust data obtained from in-situ testing of three W-K-M valves. Model predictions show favorable, bounding agreement with the measured data for valves with Stellite 6 hardfacing on the disks and seat rings for water flow in the preferred flow direction (gate downstream). The maximum required thrust to open and to close the valve (excluding wedging and unwedging forces) occurs at a slightly open position and not at the fully closed position. In the nonpreferred flow direction, the model shows that premature wedging can occur during {Delta}P closure strokes even when the coefficients of friction at different sliding surfaces are within the typical range. This paper summarizes the model description and comparison against test data.

  9. Oscillations of low-current electrical discharges between parallel-plane electrodes. III. Models

    Science.gov (United States)

    Phelps, A. V.; Petrović, Z. Lj.; Jelenković, B. M.

    1993-04-01

    Simple models are developed to describe the results of measurements of the oscillatory and negative differential resistance properties of low- to moderate-current discharges in parallel-plane geometry. The time-dependent model assumes that the ion transit time is fixed and is short compared to the times of interest, that electrons are produced at the cathode only by ions, and that space-charge distortion of the electric field is small but not negligible. Illustrative numerical solutions are given for large voltage and current changes and analytic solutions for the time dependence of current and voltage are obtained in the small-signal limit. The small-signal results include the frequency and damping constants for decaying oscillations following a voltage change or following the injection of photoelectrons. The conditions for underdamped, overdamped, and self-sustained or growing oscillations are obtained. A previously developed steady-state, nonequilibrium model for low-pressure hydrogen discharges that includes the effects of space-charge distortion of the electric field on the yield of electrons at the cathode is used to obtain the negative differential resistance. Analytic expressions for the differential resistance and capacitance are developed using the steady-state, local-equilibrium model for electron and ion motion and a first-order perturbation treatment of space-charge electric fields. These models generally show good agreement with data from dc and pulsed discharge experiments presented in the accompanying papers.

  10. A parallel process growth mixture model of conduct problems and substance use with risky sexual behavior.

    Science.gov (United States)

    Wu, Johnny; Witkiewitz, Katie; McMahon, Robert J; Dodge, Kenneth A

    2010-10-01

    Conduct problems, substance use, and risky sexual behavior have been shown to coexist among adolescents, which may lead to significant health problems. The current study was designed to examine relations among these problem behaviors in a community sample of children at high risk for conduct disorder. A latent growth model of childhood conduct problems showed a decreasing trend from grades K to 5. During adolescence, four concurrent conduct problem and substance use trajectory classes were identified (high conduct problems and high substance use, increasing conduct problems and increasing substance use, minimal conduct problems and increasing substance use, and minimal conduct problems and minimal substance use) using a parallel process growth mixture model. Across all substances (tobacco, binge drinking, and marijuana use), higher levels of childhood conduct problems during kindergarten predicted a greater probability of classification into more problematic adolescent trajectory classes relative to less problematic classes. For tobacco and binge drinking models, increases in childhood conduct problems over time also predicted a greater probability of classification into more problematic classes. For all models, individuals classified into more problematic classes showed higher proportions of early sexual intercourse, infrequent condom use, receiving money for sexual services, and ever contracting an STD. Specifically, tobacco use and binge drinking during early adolescence predicted higher levels of sexual risk taking into late adolescence. Results highlight the importance of studying the conjoint relations among conduct problems, substance use, and risky sexual behavior in a unified model. Copyright © 2010 Elsevier Ireland Ltd. All rights reserved.

  11. Phase Diagram for Ashkin-Teller Model on Bethe Lattice

    Institute of Scientific and Technical Information of China (English)

    LE Jian-Xin; YANG Zhan-Ru

    2005-01-01

    Using the recursion method, we study the phase transitions of the Ashkin-Teller model on the Bethe lattice,restricting ourselves to the case of ferromagnetic interactions. The isotropic Ashkin-Teller model and the anisotropic one are respectively investigated, and exact expressions for the free energy and the magnetization are obtained. It can be found that each of the three varieties of phase diagrams, for the anisotropic Ashkin-Teller model, consists of four phases, I.e., the fully disordered paramagnetic phase Para, the fully ordered ferromagnetic phase Ferro, and two partially ordered ferromagnetic phases and , while the phase diagram, for the isotropic Ashkin-Teller model,contains three phases, I.e., the fully disordered paramagnetic phase Para, the fully ordered ferromagnetic phase Baxter Phase, and the partially ordered ferromagnetic phase .

  12. A Parallel Ocean Model With Adaptive Mesh Refinement Capability For Global Ocean Prediction

    Energy Technology Data Exchange (ETDEWEB)

    Herrnstein, Aaron R. [Univ. of California, Davis, CA (United States)

    2005-12-01

    An ocean model with adaptive mesh refinement (AMR) capability is presented for simulating ocean circulation on decade time scales. The model closely resembles the LLNL ocean general circulation model with some components incorporated from other well known ocean models when appropriate. Spatial components are discretized using finite differences on a staggered grid where tracer and pressure variables are defined at cell centers and velocities at cell vertices (B-grid). Horizontal motion is modeled explicitly with leapfrog and Euler forward-backward time integration, and vertical motion is modeled semi-implicitly. New AMR strategies are presented for horizontal refinement on a B-grid, leapfrog time integration, and time integration of coupled systems with unequal time steps. These AMR capabilities are added to the LLNL software package SAMRAI (Structured Adaptive Mesh Refinement Application Infrastructure) and validated with standard benchmark tests. The ocean model is built on top of the amended SAMRAI library. The resulting model has the capability to dynamically increase resolution in localized areas of the domain. Limited basin tests are conducted using various refinement criteria and produce convergence trends in the model solution as refinement is increased. Carbon sequestration simulations are performed on decade time scales in domains the size of the North Atlantic and the global ocean. A suggestion is given for refinement criteria in such simulations. AMR predicts maximum pH changes and increases in CO2 concentration near the injection sites that are virtually unattainable with a uniform high resolution due to extremely long run times. Fine scale details near the injection sites are achieved by AMR with shorter run times than the finest uniform resolution tested despite the need for enhanced parallel performance. The North Atlantic simulations show a reduction in passive tracer errors when AMR is applied instead of a uniform coarse resolution. No

  13. Phase diagram of a Schelling segregation model

    Science.gov (United States)

    Gauvin, L.; Vannimenus, J.; Nadal, J.-P.

    2009-07-01

    The collective behavior in a variant of Schelling’s segregation model is characterized with methods borrowed from statistical physics, in a context where their relevance was not conspicuous. A measure of segregation based on cluster geometry is defined and several quantities analogous to those used to describe physical lattice models at equilibrium are introduced. This physical approach allows to distinguish quantitatively several regimes and to characterize the transitions between them, leading to the building of a phase diagram. Some of the transitions evoke empirical sudden ethnic turnovers. We also establish links with ‘spin-1’ models in physics. Our approach provides generic tools to analyze the dynamics of other socio-economic systems.

  14. MODELING AND CONTROLLING OF PARALLEL MANIPULATOR JOINT DRIVEN BY PNEUMATIC MUSCLES

    Institute of Scientific and Technical Information of China (English)

    Tao Guoliang; Zhu Xiaocong; Cao Jian

    2005-01-01

    A parallel manipulator joint driven by three pneumatic muscles and its posture control strategy are presented. Based on geometric constraints and dynamics, a system model is developed through which some influences on dynamic response and open-loop gain are analyzed including the supply pressure, the initial pressure and the volume of pneumatic muscle. A sliding-mode controller with a nonlinear switching function is applied to control posture, which adopts the combination of a main method that separates control of each muscle and an auxiliary method that postures error evaluation of multiple muscles, especially adopting the segmented and intelligent adjustments of sliding-mode parameters to fit different expected postures and initial states. Experimental results show that this control strategy not only amounts to the steady-state error of O.1° without overshoot, but also achieves good trajectory tracking.

  15. Parallelization of a Three-Dimensional Shallow-Water Estuary Model on the KSR-1

    Directory of Open Access Journals (Sweden)

    C. FalcÓ Korn

    1995-01-01

    Full Text Available Flows in estuarial and coastal regions may be described by the shallow-water equations. The processes of pollution transport, sediment transport, and plume dispersion are driven by the underlying hydrodynamics. Accurate resolution of these processes requires a three-dimensional formulation with turbulence modeling, which is very demanding computationally. A numerical scheme has been developed which is both stable and accurate – we show that this scheme is also well suited to parallel processing, making the solution of massive complex problems a practical computing possibility. We describe the implementation of the numerical scheme on a Kendall Square Research KSR-1 multiprocessor, and present experimental results which demonstrate that a problem requiring 600,000 mesh points and 6,000 time steps can be solved in under 8 hours using 32 processors.

  16. A Parallel Decision Model Based on Support Vector Machines and Its Application to Fault Diagnosis

    Institute of Scientific and Technical Information of China (English)

    Yan Weiwu(阎威武); Shao Huihe

    2004-01-01

    Many industrial process systems are becoming more and more complex and are characterized by distributed features. To ensure such a system to operate under working order, distributed parameter values are often inspected from subsystems or different points in order to judge working conditions of the system and make global decisions. In this paper, a parallel decision model based on Support Vector Machine (PDMSVM) is introduced and applied to the distributed fault diagnosis in industrial process. PDMSVM is convenient for information fusion of distributed system and it performs well in fault diagnosis with distributed features. PDMSVM makes decision based on synthetic information of subsystems and takes the advantage of Support Vector Machine. Therefore decisions made by PDMSVM are highly reliable and accurate.

  17. Bentonite electrical conductivity: a model based on series–parallel transport

    KAUST Repository

    Lima, Ana T.

    2010-01-30

    Bentonite has significant applications nowadays, among them as landfill liners, in concrete industry as a repairing material, and as drilling mud in oil well construction. The application of an electric field to such perimeters is under wide discussion, and subject of many studies. However, to understand the behaviour of such an expansive and plastic material under the influence of an electric field, the perception of its electrical properties is essential. This work serves to compare existing data of such electrical behaviour with new laboratorial results. Electrical conductivity is a pertinent parameter since it indicates how much a material is prone to conduct electricity. In the current study, total conductivity of a compacted porous medium was established to be dependent upon density of the bentonite plug. Therefore, surface conductivity was addressed and a series-parallel transport model used to quantify/predict the total conductivity of the system. © The Author(s) 2010.

  18. MATTER-ELEMENT MODELING OF PARALLEL STRUCTURE AND APPLICATION ABOUT EXTENSION PID CONTROL SYSTEM

    Institute of Scientific and Technical Information of China (English)

    Rongde LU; Zonghai CHEN

    2006-01-01

    This article describes in detail a new method via the extension predictable algorithm of the matter-element model of parallel structure tuning the parameters of the extension PID controller. In comparison with fuzzy and extension PID controllers, the proposed extension PID predictable controller shows higher control gains when system states are away from equilibrium, and retains a lower profile of control signals at the same time. Consequently, better control performance is achieved. Through the proposed tuning formula, the weighting factors of an extension-logic predictable controller can be systematically selected according to the control plant. An experimental example through industrial field data and site engineers' experience demonstrates the superior performance of the proposed controller over the fuzzy controller.

  19. Finite element analysis and equivalent parallel-resistance model for conductive multilayer thin films

    Science.gov (United States)

    Chen, Yu-Yi; Juang, Jia-Yang

    2016-07-01

    The standard collinear four-point probe method is an indispensable tool and has been extensively used for characterizing conductive thin films with homogeneous and isotropic electrical properties. In this paper, we conduct three-dimensional (3D) finite element simulations on conductive multilayer films to study the relationship between the reading of the four-point probe and the conductivity of the individual layers. We find that a multilayer film may be modeled as a simple equivalent circuit with multiple resistances, connected in parallel for a wide range of resistivity and thickness ratios, as long as its total thickness is smaller than approximately half of the probe spacing. As a result, we may determine the resistivity of each layer sequentially by applying the four-point probe, with the original correction factor π/ln(2), after deposition of each layer.

  20. Wall shear stress measurement method based on parallel flow model near vascular wall in echography

    Science.gov (United States)

    Shimizu, Motochika; Tanaka, Tomohiko; Okada, Takashi; Seki, Yoshinori; Nishiyama, Tomohide

    2017-07-01

    A high-risk vessel of arteriosclerosis is detected by assessing wall shear stress (WSS), which is calculated from the distribution of velocity in a blood flow. A novel echographic method for measuring WSS, which aims to distinguish a normal vessel from a high-risk vessel, is proposed. To achieve this aim, the measurement error should be less than 28.8%. The proposed method is based on a flow model for the area near a vascular wall under a parallel-flow assumption to avoid the influences of error factors. This was verified by an in vitro experiment in which the WSS of a carotid artery phantom was measured. According to the experimental results, the WSS measured by the proposed method correlated with the ground truth measured by particle image velocimetry; in particular, the correlation coefficient and measurement error between them were respectively 0.70 and 27.4%. The proposed method achieved the target measurement performance.

  1. Self Localization Method Using Parallel Projection Model for Mobile Sensor in Navigation Applications

    Institute of Scientific and Technical Information of China (English)

    Shung Han Cho; Yuntai Kyong; Sangjin Hong; We-Duke Cho

    2009-01-01

    This paper presents a novel self localization method using parallel projection model for mobile sensor in navigation applications. The algorithm estimates the coordinate and the orientation of mobile sensor using projected on visual image. The proposed method considers the lens non-linearity of the camera and compensates the distortion by using a calibration table. The method determines the coordinates and orientations with iterative process, which is very accurate with low computational demand. We identify various sources of error on the coordinate and orientation estimations, and present both static sensitivity analysis of the algorithm and dynamic behavior of the mobile sensor. The algorithm can be utilized in mobile robot navigation as well as positioning application where accurate self localization is necessary.

  2. On Predictive Modeling for Optimizing Transaction Execution in Parallel OLTP Systems

    CERN Document Server

    Pavlo, Andrew; Zdonik, Stanley

    2011-01-01

    A new emerging class of parallel database management systems (DBMS) is designed to take advantage of the partitionable workloads of on-line transaction processing (OLTP) applications. Transactions in these systems are optimized to execute to completion on a single node in a shared-nothing cluster without needing to coordinate with other nodes or use expensive concurrency control measures. But some OLTP applications cannot be partitioned such that all of their transactions execute within a single-partition in this manner. These distributed transactions access data not stored within their local partitions and subsequently require more heavy-weight concurrency control protocols. Further difficulties arise when the transaction's execution properties, such as the number of partitions it may need to access or whether it will abort, are not known beforehand. The DBMS could mitigate these performance issues if it is provided with additional information about transactions. Thus, in this paper we present a Markov model...

  3. A MODEL FOR PREDICTING PHASE INVERSION IN OIL-WATER TWO-PHASE PIPE FLOW

    Institute of Scientific and Technical Information of China (English)

    GONG Jing; LI Qing-ping; YAO Hai-yuan; YU Da

    2006-01-01

    Experiments of phase inversion characteristics for horizontal oil-water two-phase flow in a stainless steel pipe loop (25.7 mm inner diameter,52 m long) are conducted. A new viewpoint is brought forward about the process of phase inversion in oil-water two-phase pipe flow. Using the relations between the total free energies of the pre-inversion and post-inversion dispersions, a model for predicting phase inversion in oil-water two-phase pipe flow has been developed that considers the characteristics of pipe flow. This model is compared against other models with relevant data of phase inversion in oil-water two-phase pipe flow. Results indicate that this model is better than other models in terms of calculation precision and applicability. The model is useful for guiding the design for optimal performance and safety in the operation of oil-water two-phase pipe flow in oil fields.

  4. Modelling, Simulation and Testing of a Reconfigurable Cable-Based Parallel Manipulator as Motion Aiding System

    Directory of Open Access Journals (Sweden)

    Gianni Castelli

    2010-01-01

    Full Text Available This paper presents results on the modelling, simulation and experimental tests of a cable-based parallel manipulator to be used as an aiding or guiding system for people with motion disabilities. There is a high level of motivation for people with a motion disability or the elderly to perform basic daily-living activities independently. Therefore, it is of great interest to design and implement safe and reliable motion assisting and guiding devices that are able to help end-users. In general, a robot for a medical application should be able to interact with a patient in safety conditions, i.e. it must not damage people or surroundings; it must be designed to guarantee high accuracy and low acceleration during the operation. Furthermore, it should not be too bulky and it should exert limited wrenches after close interaction with people. It can be advisable to have a portable system which can be easily brought into and assembled in a hospital or a domestic environment. Cable-based robotic structures can fulfil those requirements because of their main characteristics that make them light and intrinsically safe. In this paper, a reconfigurable four-cable-based parallel manipulator has been proposed as a motion assisting and guiding device to help people to accomplish a number of tasks, such as an aiding or guiding system to move the upper and lower limbs or the whole body. Modelling and simulation are presented in the ADAMS environment. Moreover, experimental tests are reported as based on an available laboratory prototype.

  5. Parallelization of TWOPORFLOW, a Cartesian Grid based Two-phase Porous Media Code for Transient Thermo-hydraulic Simulations

    Science.gov (United States)

    Trost, Nico; Jiménez, Javier; Imke, Uwe; Sanchez, Victor

    2014-06-01

    TWOPORFLOW is a thermo-hydraulic code based on a porous media approach to simulate single- and two-phase flow including boiling. It is under development at the Institute for Neutron Physics and Reactor Technology (INR) at KIT. The code features a 3D transient solution of the mass, momentum and energy conservation equations for two inter-penetrating fluids with a semi-implicit continuous Eulerian type solver. The application domain of TWOPORFLOW includes the flow in standard porous media and in structured porous media such as micro-channels and cores of nuclear power plants. In the latter case, the fluid domain is coupled to a fuel rod model, describing the heat flow inside the solid structure. In this work, detailed profiling tools have been utilized to determine the optimization potential of TWOPORFLOW. As a result, bottle-necks were identified and reduced in the most feasible way, leading for instance to an optimization of the water-steam property computation. Furthermore, an OpenMP implementation addressing the routines in charge of inter-phase momentum-, energy- and mass-coupling delivered good performance together with a high scalability on shared memory architectures. In contrast to that, the approach for distributed memory systems was to solve sub-problems resulting by the decomposition of the initial Cartesian geometry. Thread communication for the sub-problem boundary updates was accomplished by the Message Passing Interface (MPI) standard.

  6. Reactive Transport Modeling of Induced Calcite Precipitation Reaction Fronts in Porous Media Using A Parallel, Fully Coupled, Fully Implicit Approach

    Science.gov (United States)

    Guo, L.; Huang, H.; Gaston, D.; Redden, G. D.; Fox, D. T.; Fujita, Y.

    2010-12-01

    Inducing mineral precipitation in the subsurface is one potential strategy for immobilizing trace metal and radionuclide contaminants. Generating mineral precipitates in situ can be achieved by manipulating chemical conditions, typically through injection or in situ generation of reactants. How these reactants transport, mix and react within the medium controls the spatial distribution and composition of the resulting mineral phases. Multiple processes, including fluid flow, dispersive/diffusive transport of reactants, biogeochemical reactions and changes in porosity-permeability, are tightly coupled over a number of scales. Numerical modeling can be used to investigate the nonlinear coupling effects of these processes which are quite challenging to explore experimentally. Many subsurface reactive transport simulators employ a de-coupled or operator-splitting approach where transport equations and batch chemistry reactions are solved sequentially. However, such an approach has limited applicability for biogeochemical systems with fast kinetics and strong coupling between chemical reactions and medium properties. A massively parallel, fully coupled, fully implicit Reactive Transport simulator (referred to as “RAT”) based on a parallel multi-physics object-oriented simulation framework (MOOSE) has been developed at the Idaho National Laboratory. Within this simulator, systems of transport and reaction equations can be solved simultaneously in a fully coupled, fully implicit manner using the Jacobian Free Newton-Krylov (JFNK) method with additional advanced computing capabilities such as (1) physics-based preconditioning for solution convergence acceleration, (2) massively parallel computing and scalability, and (3) adaptive mesh refinements for 2D and 3D structured and unstructured mesh. The simulator was first tested against analytical solutions, then applied to simulating induced calcium carbonate mineral precipitation in 1D columns and 2D flow cells as analogs

  7. Using Hadoop MapReduce for Parallel Genetic Algorithms: A Comparison of the Global, Grid and Island Models.

    Science.gov (United States)

    Ferrucci, Filomena; Salza, Pasquale; Sarro, Federica

    2017-06-29

    The need to improve the scalability of Genetic Algorithms (GAs) has motivated the research on Parallel Genetic Algorithms (PGAs), and different technologies and approaches have been used. Hadoop MapReduce represents one of the most mature technologies to develop parallel algorithms. Based on the fact that parallel algorithms introduce communication overhead, the aim of the present work is to understand if, and possibly when, the parallel GAs solutions using Hadoop MapReduce show better performance than sequential versions in terms of execution time. Moreover, we are interested in understanding which PGA model can be more effective among the global, grid and island models. We empirically assessed the performance of these three parallel models with respect to a sequential GA on a software engineering problem, evaluating the execution time and the achieved speedup. We also analysed the behaviour of the parallel models in relation to the overhead produced by the use of Hadoop MapReduce and the GAs' computational effort, which gives a more machine-independent measure of these algorithms. We exploited three problem instances to differentiate the computation load and three cluster configurations based on 2, 4 and 8 parallel nodes. Moreover, we estimated the costs of the execution of the experimentation on a potential cloud infrastructure, based on the pricing of the major commercial cloud providers. The empirical study revealed that the use of PGA based on the island model outperforms the other parallel models and the sequential GA for all the considered instances and clusters. Using 2, 4 and 8 nodes, the island model achieves an average speedup over the three datasets of 1.8×, 3.4× and 7.0× times, respectively. Hadoop MapReduce has a set of different constraints that need to be considered during the design and the implementation of parallel algorithms. The overhead of data store (i.e., HDFS) accesses, communication and latency requires solutions that reduce data store

  8. Phase-field modeling of hydraulic fracture

    Science.gov (United States)

    Wilson, Zachary A.; Landis, Chad M.

    2016-11-01

    In this work a theoretical framework implementing the phase-field approach to fracture is used to couple the physics of flow through porous media and cracks with the mechanics of fracture. The main modeling challenge addressed in this work, which is a challenge for all diffuse crack representations, is on how to allow for the flow of fluid and the action of fluid pressure on the aggregate within the diffuse damage zone of the cracks. The theory is constructed by presenting the general physical balance laws and conducting a consistent thermodynamic analysis to constrain the constitutive relationships. Constitutive equations that reproduce the desired responses at the various limits of the phase-field parameter are proposed in order to capture Darcy-type flow in the intact porous medium and Stokes-type flow within open cracks. A finite element formulation for the solution of the governing model equations is presented and discussed. Finally, the theoretical and numerical model is shown to compare favorably to several important analytical solutions. More complex and interesting calculations are also presented to illustrate some of the advantageous features of the approach.

  9. fast_protein_cluster: parallel and optimized clustering of large-scale protein modeling data.

    Science.gov (United States)

    Hung, Ling-Hong; Samudrala, Ram

    2014-06-15

    fast_protein_cluster is a fast, parallel and memory efficient package used to cluster 60 000 sets of protein models (with up to 550 000 models per set) generated by the Nutritious Rice for the World project. fast_protein_cluster is an optimized and extensible toolkit that supports Root Mean Square Deviation after optimal superposition (RMSD) and Template Modeling score (TM-score) as metrics. RMSD calculations using a laptop CPU are 60× faster than qcprot and 3× faster than current graphics processing unit (GPU) implementations. New GPU code further increases the speed of RMSD and TM-score calculations. fast_protein_cluster provides novel k-means and hierarchical clustering methods that are up to 250× and 2000× faster, respectively, than Clusco, and identify significantly more accurate models than Spicker and Clusco. fast_protein_cluster is written in C++ using OpenMP for multi-threading support. Custom streaming Single Instruction Multiple Data (SIMD) extensions and advanced vector extension intrinsics code accelerate CPU calculations, and OpenCL kernels support AMD and Nvidia GPUs. fast_protein_cluster is available under the M.I.T. license. (http://software.compbio.washington.edu/fast_protein_cluster) © The Author 2014. Published by Oxford University Press.

  10. Examining Mechanisms Underlying Fear-Control in the Extended Parallel Process Model.

    Science.gov (United States)

    Quick, Brian L; LaVoie, Nicole R; Reynolds-Tylus, Tobias; Martinez-Gonzalez, Andrea; Skurka, Chris

    2017-01-17

    This investigation sought to advance the extended parallel process model in important ways by testing associations among the strengths of efficacy and threat appeals with fear as well as two outcomes of fear-control processing, psychological reactance and message minimization. Within the context of print ads admonishing against noise-induced hearing loss (NIHL) and the fictitious Trepidosis virus, partial support was found for the additive model with no support for the multiplicative model. High efficacy appeals mitigated freedom threat perceptions across both contexts. Fear was positively associated with both freedom threat perceptions within the NIHL context and favorable attitudes for both NIHL and Trepidosis virus contexts. In line with psychological reactance theory, a freedom threat was positively associated with psychological reactance. Reactance, in turn, was positively associated with message minimization. The models supported reactance preceding message minimization across both message contexts. Both the theoretical and practical implications are discussed with an emphasis on future research opportunities within the fear-appeal literature.

  11. Molecular Modeling of Solid Fluid Phase Behavior

    Energy Technology Data Exchange (ETDEWEB)

    Peter A. Monson

    2007-12-20

    This report gives a summary of the achievements under DOE contract No. DOE/ER/14150 during the period September 1, 1990 to December 31, 2007. This project was concerned with the molecular modeling of solid-fluid equilibrium. The focus was on understanding how solid-fluid and solid-solid phase behavior are related to molecular structure, and the research program made a seminal contribution in this area. The project led to 34 journal articles, including a comprehensive review article published in Advances in Chemical Physics. The DOE funding supported the work of 5 Ph.D. students, 2 M.S. students and 5 postdoctoral researchers.

  12. Modeling cardiovascular hemodynamics using the lattice Boltzmann method on massively parallel supercomputers

    Science.gov (United States)

    Randles, Amanda Elizabeth

    the modeling of fluids in vessels with smaller diameters and a method for introducing the deformational forces exerted on the arterial flows from the movement of the heart by borrowing concepts from cosmodynamics are presented. These additional forces have a great impact on the endothelial shear stress. Third, the fluid model is extended to not only recover Navier-Stokes hydrodynamics, but also a wider range of Knudsen numbers, which is especially important in micro- and nano-scale flows. The tradeoffs of many optimizations methods such as the use of deep halo level ghost cells that, alongside hybrid programming models, reduce the impact of such higher-order models and enable efficient modeling of extreme regimes of computational fluid dynamics are discussed. Fourth, the extension of these models to other research questions like clogging in microfluidic devices and determining the severity of co-arctation of the aorta is presented. Through this work, a validation of these methods by taking real patient data and the measured pressure value before the narrowing of the aorta and predicting the pressure drop across the co-arctation is shown. Comparison with the measured pressure drop in vivo highlights the accuracy and potential impact of such patient specific simulations. Finally, a method to enable the simulation of longer trajectories in time by discretizing both spatially and temporally is presented. In this method, a serial coarse iterator is used to initialize data at discrete time steps for a fine model that runs in parallel. This coarse solver is based on a larger time step and typically a coarser discretization in space. Iterative refinement enables the compute-intensive fine iterator to be modeled with temporal parallelization. The algorithm consists of a series of prediction-corrector iterations completing when the results have converged within a certain tolerance. Combined, these developments allow large fluid models to be simulated for longer time durations

  13. Preon model and cosmological quantum-hyperchromodynamic phase transition

    Science.gov (United States)

    Nishimura, H.; Hayashi, Y.

    1987-05-01

    From the cosmological viewpoint, we investigate whether or not recent preon models are compatible with the picture of the first-order phase transition from the preon phase to the composite quark-lepton phase. It is shown that the current models accepting the 't Hooft anomaly-matching condition together with quantum hyperchromodynamics are consistent with the cosmological first-order phase transition.

  14. Parallel sorting algorithms

    CERN Document Server

    Akl, Selim G

    1985-01-01

    Parallel Sorting Algorithms explains how to use parallel algorithms to sort a sequence of items on a variety of parallel computers. The book reviews the sorting problem, the parallel models of computation, parallel algorithms, and the lower bounds on the parallel sorting problems. The text also presents twenty different algorithms, such as linear arrays, mesh-connected computers, cube-connected computers. Another example where algorithm can be applied is on the shared-memory SIMD (single instruction stream multiple data stream) computers in which the whole sequence to be sorted can fit in the

  15. Modeling of arylamide helix mimetics in the p53 peptide binding site of hDM2 suggests parallel and anti-parallel conformations are both stable.

    Directory of Open Access Journals (Sweden)

    Jonathan C Fuller

    Full Text Available The design of novel α-helix mimetic inhibitors of protein-protein interactions is of interest to pharmaceuticals and chemical genetics researchers as these inhibitors provide a chemical scaffold presenting side chains in the same geometry as an α-helix. This conformational arrangement allows the design of high affinity inhibitors mimicking known peptide sequences binding specific protein substrates. We show that GAFF and AutoDock potentials do not properly capture the conformational preferences of α-helix mimetics based on arylamide oligomers and identify alternate parameters matching solution NMR data and suitable for molecular dynamics simulation of arylamide compounds. Results from both docking and molecular dynamics simulations are consistent with the arylamides binding in the p53 peptide binding pocket. Simulations of arylamides in the p53 binding pocket of hDM2 are consistent with binding, exhibiting similar structural dynamics in the pocket as simulations of known hDM2 binders Nutlin-2 and a benzodiazepinedione compound. Arylamide conformations converge towards the same region of the binding pocket on the 20 ns time scale, and most, though not all dihedrals in the binding pocket are well sampled on this timescale. We show that there are two putative classes of binding modes for arylamide compounds supported equally by the modeling evidence. In the first, the arylamide compound lies parallel to the observed p53 helix. In the second class, not previously identified or proposed, the arylamide compound lies anti-parallel to the p53 helix.

  16. Numerical Aspects of Nonhydrostatic Implementations Applied to a Parallel Finite Element Tsunami Model

    Science.gov (United States)

    Fuchs, A.; Androsov, A.; Harig, S.; Hiller, W.; Rakowsky, N.

    2012-04-01

    Based on the jeopardy of devastating tsunamis and the unpredictability of such events, tsunami modelling as part of warning systems is still a contemporary topic. The tsunami group of Alfred Wegener Institute developed the simulation tool TsunAWI as contribution to the Early Warning System in Indonesia. Although the precomputed scenarios for this purpose qualify for satisfying deliverables, the study of further improvements continues. While TsunAWI is governed by the Shallow Water Equations, an extension of the model is based on a nonhydrostatic approach. At the arrival of a tsunami wave in coastal regions with rough bathymetry, the term containing the nonhydrostatic part of pressure, that is neglected in the original hydrostatic model, gains in importance. In consideration of this term, a better approximation of the wave is expected. Differences of hydrostatic and nonhydrostatic model results are contrasted in the standard benchmark problem of a solitary wave runup on a plane beach. The observation data provided by Titov and Synolakis (1995) serves as reference. The nonhydrostatic approach implies a set of equations that are similar to the Shallow Water Equations, so the variation of the code can be implemented on top. However, this additional routines cause a lot of issues you have to cope with. So far the computations of the model were purely explicit. In the nonhydrostatic version the determination of an additional unknown and the solution of a large sparse system of linear equations is necessary. The latter constitutes the lion's share of computing time and memory requirement. Since the corresponding matrix is only symmetric in structure and not in values, an iterative Krylov Subspace Method is used, in particular the restarted Generalized Minimal Residual Algorithm GMRES(m). With regard to optimization, we present a comparison of several combinations of sequential and parallel preconditioning techniques respective number of iterations and setup

  17. Speed Sensorless vector control of parallel-connected three-phase two-motor single-inverter drive system

    DEFF Research Database (Denmark)

    Gunabalan, Ramachandiran; Sanjeevikumar, Padmanaban; Blaabjerg, Frede

    2016-01-01

    This paper presents the characteristic behavior of direct vector control of two induction motors with sensorless speed feedback having the same rating parameters, paralleled combination, and supplied from a single current-controlled pulse-width-modulated voltage-source inverter drive. Natural obs...

  18. Application of an analytical phase transformation model

    Institute of Scientific and Technical Information of China (English)

    LIU Feng; WANG Hai-feng; YANG Chang-lin; CHEN Zheng; YANG Wei; YANG Gen-cang

    2006-01-01

    Employing isothermal and isochronal differential scanning calorimetry, an analytical phase transformation model was used to study the kinetics of crystallization of amorphous Mg82.3Cu17.7 and Pd40Cu30P20Ni10 alloys. The analytical model comprised different combinations of various nucleation and growth mechanisms for a single transformation. Applying different combinations of nucleation and growth mechanisms, the nucleation and growth modes and the corresponding kinetic and thermodynamic parameters, have been determined. The influence of isothermal pre-annealing on subsequent isochronal crystallization kinetics with the increase of pre-annealing can be analyzed. The results show that the changes of the growth exponent, n, and the effective overall activation energy Q, occurring as function of the degree of transformation, do not necessarily imply a change of nucleation and growth mechanisms, i.e. such changes can occur while the transformation is isokinetic.

  19. Stochastic dynamics of small ensembles of non-processive molecular motors: the parallel cluster model

    CERN Document Server

    Erdmann, Thorsten; Schwarz, Ulrich S

    2013-01-01

    Non-processive molecular motors have to work together in ensembles in order to generate appreciable levels of force or movement. In skeletal muscle, for example, hundreds of myosin II molecules cooperate in thick filaments. In non-muscle cells, by contrast, small groups with few tens of non-muscle myosin II motors contribute to essential cellular processes such as transport, shape changes or mechanosensing. Here we introduce a detailed and analytically tractable model for this important situation. Using a three-state crossbridge model for the myosin II motor cycle and exploiting the assumptions of fast power stroke kinetics and equal load sharing between motors in equivalent states, we reduce the stochastic reaction network to a one-step master equation for the binding and unbinding dynamics (parallel cluster model) and derive the rules for ensemble movement. We find that for constant external load, ensemble dynamics is strongly shaped by the catch bond character of myosin II, which leads to an increase of th...

  20. Performance modeling and analysis of parallel Gaussian elimination on multi-core computers

    Directory of Open Access Journals (Sweden)

    Fadi N. Sibai

    2014-01-01

    Full Text Available Gaussian elimination is used in many applications and in particular in the solution of systems of linear equations. This paper presents mathematical performance models and analysis of four parallel Gaussian Elimination methods (precisely the Original method and the new Meet in the Middle –MiM– algorithms and their variants with SIMD vectorization on multi-core systems. Analytical performance models of the four methods are formulated and presented followed by evaluations of these models with modern multi-core systems’ operation latencies. Our results reveal that the four methods generally exhibit good performance scaling with increasing matrix size and number of cores. SIMD vectorization only makes a large difference in performance for low number of cores. For a large matrix size (n ⩾ 16 K, the performance difference between the MiM and Original methods falls from 16× with four cores to 4× with 16 K cores. The efficiencies of all four methods are low with 1 K cores or more stressing a major problem of multi-core systems where the network-on-chip and memory latencies are too high in relation to basic arithmetic operations. Thus Gaussian Elimination can greatly benefit from the resources of multi-core systems, but higher performance gains can be achieved if multi-core systems can be designed with lower memory operation, synchronization, and interconnect communication latencies, requirements of utmost importance and challenge in the exascale computing age.

  1. A model of saccade generation based on parallel processing and competitive inhibition.

    Science.gov (United States)

    Findlay, J M; Walker, R

    1999-08-01

    During active vision, the eyes continually scan the visual environment using saccadic scanning movements. This target article presents an information processing model for the control of these movements, with some close parallels to established physiological processes in the oculomotor system. Two separate pathways are concerned with the spatial and the temporal programming of the movement. In the temporal pathway there is spatially distributed coding and the saccade target is selected from a "salience map." Both pathways descend through a hierarchy of levels, the lower ones operating automatically. Visual onsets have automatic access to the eye control system via the lower levels. Various centres in each pathway are interconnected via reciprocal inhibition. The model accounts for a number of well-established phenomena in target-elicited saccades: the gap effect, express saccades, the remote distractor effect, and the global effect. High-level control of the pathways in tasks such as visual search and reading is discussed; it operates through spatial selection and search selection, which generally combine in an automated way. The model is examined in relation to data from patients with unilateral neglect.

  2. Microgravity two-phase flow regime modeling

    Energy Technology Data Exchange (ETDEWEB)

    Lee, D.; Best, F.R.; Faget, N.

    1987-01-01

    A flow pattern or flow regime is the characteristics spatial distribution of the phases of fluid in a duct. Since heat transfer and pressure drop are dependent on the characteristic distribution of the phases, it is necessary to describe flow patterns in an appropriate manner so that a hydrodynamic or heat transfer theory applicable to that pattern can be chosen. The objective of the present analysis is to create a flow regime map based on physical modeling of vapor/liquid interaction phenomena in a microgravity environment. In the present work, four basic flow patterns are defined: dispersed flow, stratified flow, slug flow, and annular flow. Fluid properties, liquid and vapor flow rates, and pipe size were chosen as the principal parameters. It is assumed that a transition from one flow pattern to another will occur when there is a change in the dominant force which controls that flow pattern. The forces considered in this modeling are surface tension force, both force, inertial force, friction, and turbulent fluctuations.

  3. Dynamic Modeling of Phase Crossings in Two-Phase Flow

    DEFF Research Database (Denmark)

    Madsen, Søren; Veje, Christian; Willatzen, Morten

    2012-01-01

    of the variables and are usually very slow to evaluate. To overcome these challenges, we use an interpolation scheme with local refinement. The simulations show that the method handles crossing of the saturation lines for both liquid to two-phase and two-phase to gas regions. Furthermore, a novel result obtained...... in this work, the method is stable towards dynamic transitions of the inlet/outlet boundaries across the saturation lines. Results for these cases are presented along with a numerical demonstration of conservation of mass under dynamically varying boundary conditions. Finally we present results...

  4. Parallel processing ITS

    Energy Technology Data Exchange (ETDEWEB)

    Fan, W.C.; Halbleib, J.A. Sr.

    1996-09-01

    This report provides a users` guide for parallel processing ITS on a UNIX workstation network, a shared-memory multiprocessor or a massively-parallel processor. The parallelized version of ITS is based on a master/slave model with message passing. Parallel issues such as random number generation, load balancing, and communication software are briefly discussed. Timing results for example problems are presented for demonstration purposes.

  5. Introduction to parallel programming

    CERN Document Server

    Brawer, Steven

    1989-01-01

    Introduction to Parallel Programming focuses on the techniques, processes, methodologies, and approaches involved in parallel programming. The book first offers information on Fortran, hardware and operating system models, and processes, shared memory, and simple parallel programs. Discussions focus on processes and processors, joining processes, shared memory, time-sharing with multiple processors, hardware, loops, passing arguments in function/subroutine calls, program structure, and arithmetic expressions. The text then elaborates on basic parallel programming techniques, barriers and race

  6. Three-dimensional electromagnetic modeling and inversion on massively parallel computers

    Energy Technology Data Exchange (ETDEWEB)

    Newman, G.A.; Alumbaugh, D.L. [Sandia National Labs., Albuquerque, NM (United States). Geophysics Dept.

    1996-03-01

    This report has demonstrated techniques that can be used to construct solutions to the 3-D electromagnetic inverse problem using full wave equation modeling. To this point great progress has been made in developing an inverse solution using the method of conjugate gradients which employs a 3-D finite difference solver to construct model sensitivities and predicted data. The forward modeling code has been developed to incorporate absorbing boundary conditions for high frequency solutions (radar), as well as complex electrical properties, including electrical conductivity, dielectric permittivity and magnetic permeability. In addition both forward and inverse codes have been ported to a massively parallel computer architecture which allows for more realistic solutions that can be achieved with serial machines. While the inversion code has been demonstrated on field data collected at the Richmond field site, techniques for appraising the quality of the reconstructions still need to be developed. Here it is suggested that rather than employing direct matrix inversion to construct the model covariance matrix which would be impossible because of the size of the problem, one can linearize about the 3-D model achieved in the inverse and use Monte-Carlo simulations to construct it. Using these appraisal and construction tools, it is now necessary to demonstrate 3-D inversion for a variety of EM data sets that span the frequency range from induction sounding to radar: below 100 kHz to 100 MHz. Appraised 3-D images of the earth`s electrical properties can provide researchers opportunities to infer the flow paths, flow rates and perhaps the chemistry of fluids in geologic mediums. It also offers a means to study the frequency dependence behavior of the properties in situ. This is of significant relevance to the Department of Energy, paramount to characterizing and monitoring of environmental waste sites and oil and gas exploration.

  7. Implementation of a Message Passing Interface into a Cloud-Resolving Model for Massively Parallel Computing

    Science.gov (United States)

    Juang, Hann-Ming Henry; Tao, Wei-Kuo; Zeng, Xi-Ping; Shie, Chung-Lin; Simpson, Joanne; Lang, Steve

    2004-01-01

    The capability for massively parallel programming (MPP) using a message passing interface (MPI) has been implemented into a three-dimensional version of the Goddard Cumulus Ensemble (GCE) model. The design for the MPP with MPI uses the concept of maintaining similar code structure between the whole domain as well as the portions after decomposition. Hence the model follows the same integration for single and multiple tasks (CPUs). Also, it provides for minimal changes to the original code, so it is easily modified and/or managed by the model developers and users who have little knowledge of MPP. The entire model domain could be sliced into one- or two-dimensional decomposition with a halo regime, which is overlaid on partial domains. The halo regime requires that no data be fetched across tasks during the computational stage, but it must be updated before the next computational stage through data exchange via MPI. For reproducible purposes, transposing data among tasks is required for spectral transform (Fast Fourier Transform, FFT), which is used in the anelastic version of the model for solving the pressure equation. The performance of the MPI-implemented codes (i.e., the compressible and anelastic versions) was tested on three different computing platforms. The major results are: 1) both versions have speedups of about 99% up to 256 tasks but not for 512 tasks; 2) the anelastic version has better speedup and efficiency because it requires more computations than that of the compressible version; 3) equal or approximately-equal numbers of slices between the x- and y- directions provide the fastest integration due to fewer data exchanges; and 4) one-dimensional slices in the x-direction result in the slowest integration due to the need for more memory relocation for computation.

  8. A parallel model for SQL astronomical databases based on solid state storage. Application to the Gaia Archive PostgreSQL database

    Science.gov (United States)

    González-Núñez, J.; Gutiérrez-Sánchez, R.; Salgado, J.; Segovia, J. C.; Merín, B.; Aguado-Agelet, F.

    2017-07-01

    Query planning and optimisation algorithms in most popular relational databases were developed at the times hard disk drives were the only storage technology available. The advent of higher parallel random access capacity devices, such as solid state disks, opens up the way for intra-machine parallel computing over large datasets. We describe a two phase parallel model for the implementation of heavy analytical processes in single instance PostgreSQL astronomical databases. This model is particularised to fulfil two frequent astronomical problems, density maps and crossmatch computation with Quad Tree Cube (Q3C) indexes. They are implemented as part of the relational databases infrastructure for the Gaia Archive and performance is assessed. Improvement of a factor 28.40 in comparison to sequential execution is observed in the reference implementation for a histogram computation. Speedup ratios of 3.7 and 4.0 are attained for the reference positional crossmatches considered. We observe large performance enhancements over sequential execution for both CPU and disk access intensive computations, suggesting these methods might be useful with the growing data volumes in Astronomy.

  9. Research on Task Parallel Programming Model%任务并行编程模型研究与进展

    Institute of Scientific and Technical Information of China (English)

    王蕾; 崔慧敏; 陈莉; 冯晓兵

    2013-01-01

    Task parallel programming model is a widely used parallel programming model on multi-core platforms.With the intention of simplifying parallel programming and improving the utilization of multiple cores,this paper provides an introduction to the essential programming interfaces and the supporting mechanism used in task parallel programming models and discusses issues and the latest achievements from three perspectives:Parallelism expression,data management and task scheduling.In the end,some future trends in this area are discussed.%任务并行编程模型是近年来多核平台上广泛研究和使用的并行编程模型,旨在简化并行编程和提高多核利用率.首先,介绍了任务并行编程模型的基本编程接口和支持机制;然后,从3个角度,即并行性表达、数据管理和任务调度介绍任务并行编程模型的研究问题、困难和最新研究成果;最后展望了任务并行未来的研究方向.

  10. The Modeling and Harmonic Coupling Analysis of Multiple-Parallel Connected Inverter Using Harmonic State Space (HSS)

    DEFF Research Database (Denmark)

    Kwon, Jun Bum; Wang, Xiongfei; Bak, Claus Leth;

    2015-01-01

    be difficult in terms of complex multi-parallel connected systems, especially in the case of renewable energy, where possibilities for intermittent operation due to the weather conditions exist. Hence, it can bring many different operating points to the power converter, and the impedance characteristics can...... change compared to the conventional operation. In this paper, a Harmonic State Space modeling method, which is based on the Linear Time varying theory, is used to analyze different operating points of the parallel connected converters. The analyzed results show that the HSS modeling approach explicitly...

  11. Analysis and Modeling of Circulating Current in Two Parallel-Connected Inverters

    DEFF Research Database (Denmark)

    Maheshwari, Ram Krishan; Gohil, Ghanshyamsinh Vijaysinh; Bede, Lorand;

    2015-01-01

    Parallel-connected inverters are gaining attention for high power applications because of the limited power handling capability of the power modules. Moreover, the parallel-connected inverters may have low total harmonic distortion of the ac current if they are operated with the interleaved pulse...

  12. Parallelization experience with four canonical econometric models using ParMitISEM

    NARCIS (Netherlands)

    Baştürk, N.; Grassi, S.; Hoogerheide, L.; van Dijk, H.K.

    2016-01-01

    This paper presents the parallel computing implementation of the MitISEM algorithm, labeled Parallel MitISEM. The basic MitISEM algorithm, introduced by Hoogerheide et al. (2012), provides an automatic and flexible method to approximate a non-elliptical target density using adaptive mixtures of

  13. Parallelization experience with four canonical econometric models using ParMitISEM

    NARCIS (Netherlands)

    Bastürk, Nalan; Grassi, S.; Hoogerheide, L.; van Dijk, Herman K.

    2016-01-01

    This paper presents the parallel computing implementation of the MitISEM algorithm, labeled Parallel MitISEM. The basic MitISEM algorithm provides an automatic and flexible method to approximate a non-elliptical target density using adaptive mixtures of Student-t densities, where only a kernel of

  14. Parallelization Experience with Four Canonical Econometric Models Using ParMitISEM

    NARCIS (Netherlands)

    N. Basturk (Nalan); S. Grassi (Stefano); L.F. Hoogerheide (Lennart); H.K. van Dijk (Herman)

    2016-01-01

    textabstractThis paper presents the parallel computing implementation of the MitISEM algorithm, labeled Parallel MitISEM. The basic MitISEM algorithm, introduced by Hoogerheide, Opschoor and Van Dijk (2012), provides an automatic and flexible method to approximate a non-elliptical target density

  15. Parallelization experience with four canonical econometric models using ParMitISEM

    NARCIS (Netherlands)

    Baştürk, N.; Grassi, S.; Hoogerheide, L.; van Dijk, H.K.

    2016-01-01

    This paper presents the parallel computing implementation of the MitISEM algorithm, labeled Parallel MitISEM. The basic MitISEM algorithm, introduced by Hoogerheide et al. (2012), provides an automatic and flexible method to approximate a non-elliptical target density using adaptive mixtures of Stud

  16. Some approaches for modeling and analysis of a parallel mechanism with stewart platform architecture

    Energy Technology Data Exchange (ETDEWEB)

    V. De Sapio

    1998-05-01

    Parallel mechanisms represent a family of devices based on a closed kinematic architecture. This is in contrast to serial mechanisms, which are comprised of a chain-like series of joints and links in an open kinematic architecture. The closed architecture of parallel mechanisms offers certain benefits and disadvantages.

  17. MIP models and hybrid algorithms for simultaneous job splitting and scheduling on unrelated parallel machines.

    Science.gov (United States)

    Eroglu, Duygu Yilmaz; Ozmutlu, H Cenk

    2014-01-01

    We developed mixed integer programming (MIP) models and hybrid genetic-local search algorithms for the scheduling problem of unrelated parallel machines with job sequence and machine-dependent setup times and with job splitting property. The first contribution of this paper is to introduce novel algorithms which make splitting and scheduling simultaneously with variable number of subjobs. We proposed simple chromosome structure which is constituted by random key numbers in hybrid genetic-local search algorithm (GAspLA). Random key numbers are used frequently in genetic algorithms, but it creates additional difficulty when hybrid factors in local search are implemented. We developed algorithms that satisfy the adaptation of results of local search into the genetic algorithms with minimum relocation operation of genes' random key numbers. This is the second contribution of the paper. The third contribution of this paper is three developed new MIP models which are making splitting and scheduling simultaneously. The fourth contribution of this paper is implementation of the GAspLAMIP. This implementation let us verify the optimality of GAspLA for the studied combinations. The proposed methods are tested on a set of problems taken from the literature and the results validate the effectiveness of the proposed algorithms.

  18. Multi-objective optimization algorithms for mixed model assembly line balancing problem with parallel workstations

    Directory of Open Access Journals (Sweden)

    Masoud Rabbani

    2016-12-01

    Full Text Available This paper deals with mixed model assembly line (MMAL balancing problem of type-I. In MMALs several products are made on an assembly line while the similarity of these products is so high. As a result, it is possible to assemble several types of products simultaneously without any additional setup times. The problem has some particular features such as parallel workstations and precedence constraints in dynamic periods in which each period also effects on its next period. The research intends to reduce the number of workstations and maximize the workload smoothness between workstations. Dynamic periods are used to determine all variables in different periods to achieve efficient solutions. A non-dominated sorting genetic algorithm (NSGA-II and multi-objective particle swarm optimization (MOPSO are used to solve the problem. The proposed model is validated with GAMS software for small size problem and the performance of the foregoing algorithms is compared with each other based on some comparison metrics. The NSGA-II outperforms MOPSO with respect to some comparison metrics used in this paper, but in other metrics MOPSO is better than NSGA-II. Finally, conclusion and future research is provided.

  19. Modelling packing interactions in parallel helix bundles: pentameric bundles of nicotinic receptor M2 helices.

    Science.gov (United States)

    Sankararamakrishnan, R; Sansom, M S

    1995-11-01

    The transbilayer pore of the nicotinic acetylcholine receptor (nAChR) is formed by a pentameric bundle of M2 helices. Models of pentameric bundles of M2 helices have been generated using simulated annealing via restrained molecular dynamics. The influence of: (a) the initial C alpha template; and (b) screening of sidechain electrostatic interactions on the geometry of the resultant M2 helix bundles is explored. Parallel M2 helices, in the absence of sidechain electrostatic interactions, pack in accordance with simple ridges-in-grooves considerations. This results in a helix crossing angle of ca. +12 degrees, corresponding to a left-handed coiled coil structure for the bundle as a whole. Tilting of M2 helices away from the central pore axis at their C-termini and/or inclusion of sidechain electrostatic interactions may perturb such ridges-in-grooves packing. In the most extreme cases right-handed coiled coils are formed. An interplay between inter-helix H-bonding and helix bundle geometry is revealed. The effects of changes in electrostatic screening on the dimensions of the pore mouth are described and the significance of these changes in the context of models for the nAChR pore domain is discussed.

  20. Extending simulations for virtual commissioning to operating plants. Challenges during the operation phase of industrial plants and use cases for simulations in parallel to operating plants; Von der virtuellen Inbetriebnahme zur Betriebsparallelen Simulation. Herausforderungen im Anlagenbetrieb und Nutzenpotentiale der Betriebsparallelen Simulation

    Energy Technology Data Exchange (ETDEWEB)

    Kain, Sebastian; Schiller, Frank [TU Muenchen (Germany). Lehrstuhl fuer Informationstechnik im Maschinenwesen; Heuschmann, Christian [Siemens AG, Nuernberg (Germany). Industry Sector, Industry Automation, Advanced Technologies and Standards

    2008-07-01

    Short product life cycles, increasing complexity of machines and production plants as well as competitive markets require the identification of the potential for reducing efforts concerning time and costs during the life cycle of production plants. In this context, simulation plays a key role. While simulation methods are mainly applied during the development and engineering phases nowadays, the use of simulation models in parallel to machines and industrial plants during the operation phase provides additional benefits, not entirely discovered at present. In this paper, potentials are derived in use cases and two methodological approaches based on a simulation of the plant running in parallel are presented. (orig.)

  1. Triple Arterial Phase MR Imaging with Gadoxetic Acid Using a Combination of Contrast Enhanced Time Robust Angiography, Keyhole, and Viewsharing Techniques and Two-Dimensional Parallel Imaging in Comparison with Conventional Single Arterial Phase

    Energy Technology Data Exchange (ETDEWEB)

    Yoon, Jeong Hee [Department of Radiology, Seoul National University Hospital, Seoul 03080 (Korea, Republic of); Department of Radiology, Seoul National University College of Medicine, Seoul 03087 (Korea, Republic of); Lee, Jeong Min [Department of Radiology, Seoul National University Hospital, Seoul 03080 (Korea, Republic of); Department of Radiology, Seoul National University College of Medicine, Seoul 03087 (Korea, Republic of); Institute of Radiation Medicine, Seoul National University Medical Research Center, Seoul 03087 (Korea, Republic of); Yu, Mi Hye [Department of Radiology, Konkuk University Medical Center, Seoul 05030 (Korea, Republic of); Kim, Eun Ju [Philips Healthcare Korea, Seoul 04342 (Korea, Republic of); Han, Joon Koo [Department of Radiology, Seoul National University Hospital, Seoul 03080 (Korea, Republic of); Department of Radiology, Seoul National University College of Medicine, Seoul 03087 (Korea, Republic of); Institute of Radiation Medicine, Seoul National University Medical Research Center, Seoul 03087 (Korea, Republic of)

    2016-11-01

    To determine whether triple arterial phase acquisition via a combination of Contrast Enhanced Time Robust Angiography, keyhole, temporal viewsharing and parallel imaging can improve arterial phase acquisition with higher spatial resolution than single arterial phase gadoxetic-acid enhanced magnetic resonance imaging (MRI). Informed consent was waived for this retrospective study by our Institutional Review Board. In 752 consecutive patients who underwent gadoxetic acid-enhanced liver MRI, either single (n = 587) or triple (n = 165) arterial phases was obtained in a single breath-hold under MR fluoroscopy guidance. Arterial phase timing was assessed, and the degree of motion was rated on a four-point scale. The percentage of patients achieving the late arterial phase without significant motion was compared between the two methods using the χ{sup 2} test. The late arterial phase was captured at least once in 96.4% (159/165) of the triple arterial phase group and in 84.2% (494/587) of the single arterial phase group (p < 0.001). Significant motion artifacts (score ≤ 2) were observed in 13.3% (22/165), 1.2% (2/165), 4.8% (8/165) on 1st, 2nd, and 3rd scans of triple arterial phase acquisitions and 6.0% (35/587) of single phase acquisitions. Thus, the late arterial phase without significant motion artifacts was captured in 96.4% (159/165) of the triple arterial phase group and in 79.9% (469/587) of the single arterial phase group (p < 0.001). Triple arterial phase imaging may reliably provide adequate arterial phase imaging for gadoxetic acid-enhanced liver MRI.

  2. Triple arterial phase MR imaging with gadoxetic acid using a combination of contrast enhanced time robust angiography, keyhole, and viewsharing techniques and two-dimensional parallel imaging in comparison with conventional single arterial phase

    Energy Technology Data Exchange (ETDEWEB)

    Yoon, Jeong Hee; Lee, Jeong Min; Han, Joon Koo [Dept. of Radiology, Seoul National University Hospital, Seoul (Korea, Republic of); Yu, Mi Hye [Dept. of Radiology, Konkuk University Medical Center, Seoul (Korea, Republic of); Kim, Eun Ju [Philips Healthcare Korea, Seoul (Korea, Republic of)

    2016-07-15

    To determine whether triple arterial phase acquisition via a combination of Contrast Enhanced Time Robust Angiography, keyhole, temporal viewsharing and parallel imaging can improve arterial phase acquisition with higher spatial resolution than single arterial phase gadoxetic-acid enhanced magnetic resonance imaging (MRI). Informed consent was waived for this retrospective study by our Institutional Review Board. In 752 consecutive patients who underwent gadoxetic acid-enhanced liver MRI, either single (n = 587) or triple (n = 165) arterial phases was obtained in a single breath-hold under MR fluoroscopy guidance. Arterial phase timing was assessed, and the degree of motion was rated on a four-point scale. The percentage of patients achieving the late arterial phase without significant motion was compared between the two methods using the χ2 test. The late arterial phase was captured at least once in 96.4% (159/165) of the triple arterial phase group and in 84.2% (494/587) of the single arterial phase group (p < 0.001). Significant motion artifacts (score ≤ 2) were observed in 13.3% (22/165), 1.2% (2/165), 4.8% (8/165) on 1st, 2nd, and 3rd scans of triple arterial phase acquisitions and 6.0% (35/587) of single phase acquisitions. Thus, the late arterial phase without significant motion artifacts was captured in 96.4% (159/165) of the triple arterial phase group and in 79.9% (469/587) of the single arterial phase group (p < 0.001). Triple arterial phase imaging may reliably provide adequate arterial phase imaging for gadoxetic acid-enhanced liver MRI.

  3. Massively Parallel Direct Simulation of Multiphase Flow

    Energy Technology Data Exchange (ETDEWEB)

    COOK,BENJAMIN K.; PREECE,DALE S.; WILLIAMS,J.R.

    2000-08-10

    The authors understanding of multiphase physics and the associated predictive capability for multi-phase systems are severely limited by current continuum modeling methods and experimental approaches. This research will deliver an unprecedented modeling capability to directly simulate three-dimensional multi-phase systems at the particle-scale. The model solves the fully coupled equations of motion governing the fluid phase and the individual particles comprising the solid phase using a newly discovered, highly efficient coupled numerical method based on the discrete-element method and the Lattice-Boltzmann method. A massively parallel implementation will enable the solution of large, physically realistic systems.

  4. The phase transition of Axelrod's model revisited

    CERN Document Server

    Reia, Sandro M

    2016-01-01

    Axelrod's model with $F=2$ cultural features, where each feature can assume $k$ states drawn from a Poisson distribution of parameter $q$, exhibits a continuous nonequilibrium phase transition in the square lattice. Here we use extensive Monte Carlo simulations and finite size scaling to study the critical behavior of the order parameter $\\rho$, which is the fraction of sites that belong to the largest domain of an absorbing configuration averaged over many runs. We find that it vanishes as $\\rho \\sim \\left (q_c^0 - q \\right)^\\beta$ with $\\beta \\approx 0.25$ at the critical point $q_c^0 \\approx 3.10$ and that the exponent that measures the width of the critical region is $\

  5. Model-based phase-shifting interferometer

    Science.gov (United States)

    Liu, Dong; Zhang, Lei; Shi, Tu; Yang, Yongying; Chong, Shiyao; Miao, Liang; Huang, Wei; Shen, Yibing; Bai, Jian

    2015-10-01

    A model-based phase-shifting interferometer (MPI) is developed, in which a novel calculation technique is proposed instead of the traditional complicated system structure, to achieve versatile, high precision and quantitative surface tests. In the MPI, the partial null lens (PNL) is employed to implement the non-null test. With some alternative PNLs, similar as the transmission spheres in ZYGO interferometers, the MPI provides a flexible test for general spherical and aspherical surfaces. Based on modern computer modeling technique, a reverse iterative optimizing construction (ROR) method is employed for the retrace error correction of non-null test, as well as figure error reconstruction. A self-compiled ray-tracing program is set up for the accurate system modeling and reverse ray tracing. The surface figure error then can be easily extracted from the wavefront data in forms of Zernike polynomials by the ROR method. Experiments of the spherical and aspherical tests are presented to validate the flexibility and accuracy. The test results are compared with those of Zygo interferometer (null tests), which demonstrates the high accuracy of the MPI. With such accuracy and flexibility, the MPI would possess large potential in modern optical shop testing.

  6. An efficient highly parallel implementation of a large air pollution model on an IBM blue gene supercomputer

    Science.gov (United States)

    Ostromsky, Tz.; Georgiev, K.; Zlatev, Z.

    2012-10-01

    In this paper we discuss the efficient distributed-memory parallelization strategy of the Unified Danish Eulerian Model (UNI-DEM). We apply an improved decomposition strategy to the spatial domain in order to get more parallel tasks (based on the larger number of subdomains) with less communications between them (due to optimization of the overlapping area when the advection-diffusion problem is solved numerically). This kind of rectangular block partitioning (with a squareshape trend) allows us not only to increase significantly the number of potential parallel tasks, but also to reduce the local memory requirements per task, which is critical for the distributed-memory implementation of the higher-resolution/finergrid versions of UNI-DEM on some parallel systems, and particularly on the IBM BlueGene/P platform - our target hardware. We will show by experiments that our new parallel implementation can use rather efficiently the resources of the powerful IBM BlueGene/P supercomputer, the largest in Bulgaria, up to its full capacity. It turned out to be extremely useful in the large and computationally expensive numerical experiments, carried out to calculate some initial data for sensitivity analysis of the Danish Eulerian model.

  7. Stochastic dynamics of small ensembles of non-processive molecular motors: the parallel cluster model.

    Science.gov (United States)

    Erdmann, Thorsten; Albert, Philipp J; Schwarz, Ulrich S

    2013-11-07

    Non-processive molecular motors have to work together in ensembles in order to generate appreciable levels of force or movement. In skeletal muscle, for example, hundreds of myosin II molecules cooperate in thick filaments. In non-muscle cells, by contrast, small groups with few tens of non-muscle myosin II motors contribute to essential cellular processes such as transport, shape changes, or mechanosensing. Here we introduce a detailed and analytically tractable model for this important situation. Using a three-state crossbridge model for the myosin II motor cycle and exploiting the assumptions of fast power stroke kinetics and equal load sharing between motors in equivalent states, we reduce the stochastic reaction network to a one-step master equation for the binding and unbinding dynamics (parallel cluster model) and derive the rules for ensemble movement. We find that for constant external load, ensemble dynamics is strongly shaped by the catch bond character of myosin II, which leads to an increase of the fraction of bound motors under load and thus to firm attachment even for small ensembles. This adaptation to load results in a concave force-velocity relation described by a Hill relation. For external load provided by a linear spring, myosin II ensembles dynamically adjust themselves towards an isometric state with constant average position and load. The dynamics of the ensembles is now determined mainly by the distribution of motors over the different kinds of bound states. For increasing stiffness of the external spring, there is a sharp transition beyond which myosin II can no longer perform the power stroke. Slow unbinding from the pre-power-stroke state protects the ensembles against detachment.

  8. A parallel Discrete Element Method to model collisions between non-convex particles

    Science.gov (United States)

    Rakotonirina, Andriarimina Daniel; Delenne, Jean-Yves; Wachs, Anthony

    2017-06-01

    In many dry granular and suspension flow configurations, particles can be highly non-spherical. It is now well established in the literature that particle shape affects the flow dynamics or the microstructure of the particles assembly in assorted ways as e.g. compacity of packed bed or heap, dilation under shear, resistance to shear, momentum transfer between translational and angular motions, ability to form arches and block the flow. In this talk, we suggest an accurate and efficient way to model collisions between particles of (almost) arbitrary shape. For that purpose, we develop a Discrete Element Method (DEM) combined with a soft particle contact model. The collision detection algorithm handles contacts between bodies of various shape and size. For nonconvex bodies, our strategy is based on decomposing a non-convex body into a set of convex ones. Therefore, our novel method can be called "glued-convex method" (in the sense clumping convex bodies together), as an extension of the popular "glued-spheres" method, and is implemented in our own granular dynamics code Grains3D. Since the whole problem is solved explicitly, our fully-MPI parallelized code Grains3D exhibits a very high scalability when dynamic load balancing is not required. In particular, simulations on up to a few thousands cores in configurations involving up to a few tens of millions of particles can readily be performed. We apply our enhanced numerical model to (i) the collapse of a granular column made of convex particles and (i) the microstructure of a heap of non-convex particles in a cylindrical reactor.

  9. Stochastic dynamics of small ensembles of non-processive molecular motors: The parallel cluster model

    Science.gov (United States)

    Erdmann, Thorsten; Albert, Philipp J.; Schwarz, Ulrich S.

    2013-11-01

    Non-processive molecular motors have to work together in ensembles in order to generate appreciable levels of force or movement. In skeletal muscle, for example, hundreds of myosin II molecules cooperate in thick filaments. In non-muscle cells, by contrast, small groups with few tens of non-muscle myosin II motors contribute to essential cellular processes such as transport, shape changes, or mechanosensing. Here we introduce a detailed and analytically tractable model for this important situation. Using a three-state crossbridge model for the myosin II motor cycle and exploiting the assumptions of fast power stroke kinetics and equal load sharing between motors in equivalent states, we reduce the stochastic reaction network to a one-step master equation for the binding and unbinding dynamics (parallel cluster model) and derive the rules for ensemble movement. We find that for constant external load, ensemble dynamics is strongly shaped by the catch bond character of myosin II, which leads to an increase of the fraction of bound motors under load and thus to firm attachment even for small ensembles. This adaptation to load results in a concave force-velocity relation described by a Hill relation. For external load provided by a linear spring, myosin II ensembles dynamically adjust themselves towards an isometric state with constant average position and load. The dynamics of the ensembles is now determined mainly by the distribution of motors over the different kinds of bound states. For increasing stiffness of the external spring, there is a sharp transition beyond which myosin II can no longer perform the power stroke. Slow unbinding from the pre-power-stroke state protects the ensembles against detachment.

  10. Examining HPV threat-to-efficacy ratios in the Extended Parallel Process Model.

    Science.gov (United States)

    Carcioppolo, Nick; Jensen, Jakob D; Wilson, Steven R; Collins, W Bart; Carrion, Melissa; Linnemeier, Georgiann

    2013-01-01

    The Extended Parallel Process Model (EPPM) posits that an effective fear appeal includes both threat and efficacy components; however, research has not addressed whether there is an optimal threat-to-efficacy ratio. It is possible that varying levels of threat and efficacy in a persuasive message could yield different effects on attitudes, beliefs, and behaviors. In a laboratory experiment, women (n = 442) were exposed to human papilloma virus (HPV) prevention messages containing one of six threat-to-efficacy ratios and one of two message frames (messages emphasizing the connection between HPV and cervical cancer or HPV and genital warts). Multiple mediation analysis revealed that a 1-to-1 ratio of threat to efficacy was most effective at increasing prevention intentions, primarily because it caused more fear and risk susceptibility than other message ratios. Response efficacy significantly mediated the relationship between message framing and intentions, such that participants exposed to a genital warts message reported significantly higher intentions, and this association can be explained in part through response efficacy. Implications for future theoretical research as well as campaigns and intervention research are discussed.

  11. Measurement, Modeling and Reconstruction of Parallel Currents in the HSX Stellarator

    Science.gov (United States)

    Schmitt, J. C.; Talmadge, J. N.; Lore, J.

    2010-11-01

    Parallel currents are measured with a set of magnetic diagnostics on the HSX. Measurements show that the Pfirsch-Schlüter current is helical due to the lack of toroidal curvature and is reduced in magnitude compared to an equivalent tokamak because of the high effective transform (˜3) in a quasihelically symmetric stellarator. The bootstrap current density is calculated using the PENTA code,^1 which includes momentum conservation between plasma species. The data shows better agreement with a model that includes momentum conservation. HSX plasmas are heated by a 28 GHz gyrotron which allows the electrons to access the low collisionality regime, while the cold ions are generally in the plateau. In HSX, a 3-D plasma with small symmetry-breaking, the calculations show that for two species in different collisionality regimes, the bootstrap current can be strong function of the radial electric field. In the plasma core, multiple stable electric field solutions to the ambipolarity constraint exist. The large positive electric field, the ``electron-root'' solution, can result in a reduction and even a reversal of the bootstrap current. The measured fields and fluxes are used in the V3FIT^2 code to reconstruct the current profile. Supported by DOE grant DE-FG02-93ER54222. ^1D.A. Spong, Phys. Plasmas 12 (2005) 056114. ^2J.D. Hanson, et al, Nucl. Fusion 49 (2009) 075031.

  12. Parallel Priority-Flood depression filling for trillion cell digital elevation models on desktops or clusters

    Science.gov (United States)

    Barnes, Richard

    2016-11-01

    Algorithms for extracting hydrologic features and properties from digital elevation models (DEMs) are challenged by large datasets, which often cannot fit within a computer's RAM. Depression filling is an important preconditioning step to many of these algorithms. Here, I present a new, linearly scaling algorithm which parallelizes the Priority-Flood depression-filling algorithm by subdividing a DEM into tiles. Using a single-producer, multi-consumer design, the new algorithm works equally well on one core, multiple cores, or multiple machines and can take advantage of large memories or cope with small ones. Unlike previous algorithms, the new algorithm guarantees a fixed number of memory access and communication events per subdivision of the DEM. In comparison testing, this results in the new algorithm running generally faster while using fewer resources than previous algorithms. For moderately sized tiles, the algorithm exhibits ∼60% strong and weak scaling efficiencies up to 48 cores, and linear time scaling across datasets ranging over three orders of magnitude. The largest dataset on which I run the algorithm has 2 trillion (2×1012) cells. With 48 cores, processing required 4.8 h wall-time (9.3 compute-days). This test is three orders of magnitude larger than any previously performed in the literature. Complete, well-commented source code and correctness tests are available for download from a repository.

  13. Numerical simulations of the phase separation properties for the thermal aged CDSS with Phase Field Model

    Energy Technology Data Exchange (ETDEWEB)

    Xue Fei [Department of Material Science and Engineering, Tsinghua University, Beijing 100084 (China); Suzhou Nuclear Power Research Institute, Suzhou 215004 (China); Wang Zhaoxi, E-mail: wangzx03@mails.tsinghua.edu.cn [Suzhou Nuclear Power Research Institute, Suzhou 215004 (China); Applied Mechanics Laboratory, Tsinghua University, Beijing 100084 (China); Zhang Guodong [Suzhou Nuclear Power Research Institute, Suzhou 215004 (China); School of Mechanical and Power Engineering, Nanjing University of Technology, Nanjing 210009 (China); Qu Baoping; Shi Huiji [Applied Mechanics Laboratory, Tsinghua University, Beijing 100084 (China); Shu Guogang [Suzhou Nuclear Power Research Institute, Suzhou 215004 (China); Liu Wei [Department of Material Science and Engineering, Tsinghua University, Beijing 100084 (China)

    2011-07-15

    Highlights: > Thermal aging causes the Cr-rich phase precipitate and form clusters. > Phase field dynamic model is used for simulating the phase separation coarsening. > Damage initiated more easily in the ferrite matrix for the Cr clusters. - Abstract: Experiments and numerical simulations with Phase Field Model and Finite Element Analysis were carried out to investigate the phase separation dynamic properties and the corresponding thermal aging degradation mechanism. Experimental results from transmission electron microscopy and atomic force microscopy show that thermal aging causes the Cr-rich phase precipitate and form clusters. A phase field dynamic model was developed with constitutive relations and empirical potential functions to investigate the phase separation dynamics in the ferrite phase. Numerical results integrated with cell dynamical system method show clearly the micro structure morphology and the phase separation coarsening with aging time. The evolution process of the phase separation was quantitatively illustrated and reproduced macroscopically. The scattering pattern becomes clearer and the corresponding radius becomes smaller along with the increasing aging time. The average characteristic length increases firstly then decreases and enters a more stable stage. With the increment of the local Cr concentration, the evolution of the phase morphology was quite different. Finite Element Analysis simulation results with the Gurson-Tvergaard-Needleman void model show that the damage initiated more easily in the ferrite matrix for the Cr atoms forming clusters with increasing aging time. The phenomenological simulations with Phase Field Model and Finite Element Analysis were in remarkably good agreement with experimental results and analytical considerations.

  14. Parallel Computing of a Variational Data Assimilation Model for GPS/MET Observation Using the Ray-Tracing Method

    Institute of Scientific and Technical Information of China (English)

    张昕; 刘月巍; 王斌; 季仲贞

    2004-01-01

    The Spectral Statistical Interpolation (SSI) analysis system of NCEP is used to assimilate meteorological data from the Global Positioning Satellite System (GPS/MET) refraction angles with the variational technique. Verified by radiosonde, including GPS/MET observations into the analysis makes an overall improvement to the analysis variables of temperature, winds, and water vapor. However, the variational model with the ray-tracing method is quite expensive for numerical weather prediction and climate research. For example, about 4 000 GPS/MET refraction angles need to be assimilated to produce an ideal global analysis. Just one iteration of minimization will take more than 24 hours CPU time on the NCEP's Gray C90 computer. Although efforts have been taken to reduce the computational cost, it is still prohibitive for operational data assimilation. In this paper, a parallel version of the three-dimensional variational data assimilation model of GPS/MET occultation measurement suitable for massive parallel processors architectures is developed. The divide-and-conquer strategy is used to achieve parallelism and is implemented by message passing. The authors present the principles for the code's design and examine the performance on the state-of-the-art parallel computers in China. The results show that this parallel model scales favorably as the number of processors is increased. With the Memory-IO technique implemented by the author, the wall clock time per iteration used for assimilating 1420 refraction angles is reduced from 45 s to 12 s using 1420 processors. This suggests that the new parallelized code has the potential to be useful in numerical weather prediction (NWP) and climate studies.

  15. Efficient multi-objective calibration of a computationally intensive hydrologic model with parallel computing software in Python

    Science.gov (United States)

    With enhanced data availability, distributed watershed models for large areas with high spatial and temporal resolution are increasingly used to understand water budgets and examine effects of human activities and climate change/variability on water resources. Developing parallel computing software...

  16. Modeling and Control of a Parallel Waste Heat Recovery System for Euro-VI Heavy-Duty Diesel Engines

    NARCIS (Netherlands)

    Feru, E.; Willems, F.P.T.; Jager, B. de; Steinbuch, M.

    2014-01-01

    This paper presents the modeling and control of a waste heat recovery system for a Euro-VI heavy-duty truck engine. The considered waste heat recovery system consists of two parallel evaporators with expander and pumps mechanically coupled to the engine crankshaft. Compared to previous work, the

  17. Modeling and Control of a Parallel Waste Heat Recovery System for Euro-VI Heavy-Duty Diesel Engines

    NARCIS (Netherlands)

    Feru, E.; Willems, F.P.T.; Jager, B. de; Steinbuch, M.

    2014-01-01

    This paper presents the modeling and control of a waste heat recovery system for a Euro-VI heavy-duty truck engine. The considered waste heat recovery system consists of two parallel evaporators with expander and pumps mechanically coupled to the engine crankshaft. Compared to previous work, the was

  18. Spectral modeling of nebular-phase supernovae

    CERN Document Server

    Jerkstrand, Anders

    2011-01-01

    Massive stars live fast and die young. They shine furiously for a few million years, during which time they synthesize most of the heavy elements in the universe in their cores. They end by blowing themselves up in a powerful explosion known as a supernova. During this process, the core collapses to a neutron star or a black hole, while the outer layers are expelled with velocities of thousands of kilometers per second. The resulting fireworks often outshine the entire host galaxy for many weeks. The explosion energy is eventually radiated away, but powering of the newborn nebula continues by radioactive isotopes synthesized in the explosion. The ejecta are now quite transparent, and we can see the material produced in the deep interiors of the star. To interpret the observations, detailed spectral modeling is needed. This thesis aims to develop and apply state-of-the-art computational tools for interpreting and modeling supernova observations in the nebular phase. This requires calculation of the physical co...

  19. Wax Precipitation Modeled with Many Mixed Solid Phases

    DEFF Research Database (Denmark)

    Heidemann, Robert A.; Madsen, Jesper; Stenby, Erling Halfdan

    2005-01-01

    The behavior of the Coutinho UNIQUAC model for solid wax phases has been examined. The model can produce as many mixed solid phases as the number of waxy components. In binary mixtures, the solid rich in the lighter component contains little of the heavier component but the second phase shows sub...

  20. Analyzing Tropical Waves Using the Parallel Ensemble Empirical Model Decomposition Method: Preliminary Results from Hurricane Sandy

    Science.gov (United States)

    Shen, Bo-Wen; Cheung, Samson; Li, Jui-Lin F.; Wu, Yu-ling

    2013-01-01

    In this study, we discuss the performance of the parallel ensemble empirical mode decomposition (EMD) in the analysis of tropical waves that are associated with tropical cyclone (TC) formation. To efficiently analyze high-resolution, global, multiple-dimensional data sets, we first implement multilevel parallelism into the ensemble EMD (EEMD) and obtain a parallel speedup of 720 using 200 eight-core processors. We then apply the parallel EEMD (PEEMD) to extract the intrinsic mode functions (IMFs) from preselected data sets that represent (1) idealized tropical waves and (2) large-scale environmental flows associated with Hurricane Sandy (2012). Results indicate that the PEEMD is efficient and effective in revealing the major wave characteristics of the data, such as wavelengths and periods, by sifting out the dominant (wave) components. This approach has a potential for hurricane climate study by examining the statistical relationship between tropical waves and TC formation.